Query 010469
Match_columns 510
No_of_seqs 385 out of 3719
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 00:53:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010469.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010469hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 4E-68 8.6E-73 512.1 37.9 409 91-504 23-436 (493)
2 PTZ00102 disulphide isomerase; 100.0 1.6E-55 3.6E-60 451.9 46.2 390 93-503 32-426 (477)
3 TIGR01130 ER_PDI_fam protein d 100.0 9.6E-55 2.1E-59 445.6 43.3 399 94-501 2-414 (462)
4 KOG0912 Thiol-disulfide isomer 100.0 2.4E-36 5.2E-41 266.1 23.2 321 98-430 1-334 (375)
5 PF01216 Calsequestrin: Calseq 100.0 1.1E-30 2.5E-35 235.7 30.3 322 93-421 34-374 (383)
6 KOG4277 Uncharacterized conser 100.0 2.6E-31 5.7E-36 233.7 19.7 297 109-419 42-355 (468)
7 cd03006 PDI_a_EFP1_N PDIa fami 99.9 2.8E-22 6.1E-27 160.0 12.2 101 92-195 8-113 (113)
8 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 1.5E-21 3.3E-26 155.1 12.0 98 94-194 2-100 (101)
9 cd02996 PDI_a_ERp44 PDIa famil 99.9 1E-20 2.2E-25 152.3 12.7 102 94-195 2-108 (108)
10 KOG0191 Thioredoxin/protein di 99.8 6.1E-20 1.3E-24 181.6 20.8 291 101-499 38-335 (383)
11 KOG0910 Thioredoxin-like prote 99.8 8.3E-21 1.8E-25 153.4 10.9 105 93-200 43-149 (150)
12 cd03065 PDI_b_Calsequestrin_N 99.8 2E-20 4.3E-25 150.1 13.0 104 93-199 9-119 (120)
13 PF13848 Thioredoxin_6: Thiore 99.8 7E-20 1.5E-24 163.2 16.5 179 227-413 1-184 (184)
14 PF00085 Thioredoxin: Thioredo 99.8 7.4E-20 1.6E-24 146.4 14.7 101 95-198 1-103 (103)
15 cd02994 PDI_a_TMX PDIa family, 99.8 3.2E-20 7E-25 147.6 12.4 100 94-197 2-101 (101)
16 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 3.6E-20 7.8E-25 148.2 11.8 99 94-195 2-104 (104)
17 PTZ00443 Thioredoxin domain-co 99.8 3.2E-19 7E-24 159.5 15.3 105 93-200 30-140 (224)
18 cd03005 PDI_a_ERp46 PDIa famil 99.8 2.3E-19 4.9E-24 143.2 12.5 100 95-195 2-102 (102)
19 COG3118 Thioredoxin domain-con 99.8 1.4E-19 2.9E-24 162.4 11.8 106 93-201 23-132 (304)
20 cd02963 TRX_DnaJ TRX domain, D 99.8 7.5E-19 1.6E-23 141.6 12.2 99 97-197 8-110 (111)
21 cd02999 PDI_a_ERp44_like PDIa 99.8 4.5E-19 9.8E-24 139.6 10.6 84 108-195 16-100 (100)
22 cd03002 PDI_a_MPD1_like PDI fa 99.8 7E-19 1.5E-23 142.1 11.9 98 95-195 2-108 (109)
23 PRK09381 trxA thioredoxin; Pro 99.8 2.7E-18 5.8E-23 138.5 13.9 104 93-199 3-108 (109)
24 PHA02278 thioredoxin-like prot 99.8 1.6E-18 3.4E-23 136.1 11.9 92 100-194 4-100 (103)
25 cd03000 PDI_a_TMX3 PDIa family 99.8 2.1E-18 4.5E-23 137.7 12.4 97 101-198 7-103 (104)
26 cd03001 PDI_a_P5 PDIa family, 99.8 2.2E-18 4.7E-23 137.7 12.3 99 94-195 1-102 (103)
27 PRK10996 thioredoxin 2; Provis 99.8 3.8E-18 8.1E-23 143.0 14.1 105 92-199 34-139 (139)
28 cd02997 PDI_a_PDIR PDIa family 99.8 2.4E-18 5.3E-23 137.8 12.4 100 95-195 2-104 (104)
29 cd03007 PDI_a_ERp29_N PDIa fam 99.8 1.2E-18 2.7E-23 137.7 10.2 98 94-198 2-115 (116)
30 cd02954 DIM1 Dim1 family; Dim1 99.8 1.3E-18 2.8E-23 137.1 10.1 88 100-190 2-92 (114)
31 cd02993 PDI_a_APS_reductase PD 99.8 2.2E-18 4.8E-23 138.6 11.5 100 94-195 2-109 (109)
32 cd02956 ybbN ybbN protein fami 99.8 3.7E-18 8E-23 134.3 12.4 91 102-195 2-95 (96)
33 TIGR01126 pdi_dom protein disu 99.8 3.2E-18 6.8E-23 136.6 11.9 100 98-198 1-101 (102)
34 cd02948 TRX_NDPK TRX domain, T 99.8 7.1E-18 1.5E-22 133.8 12.3 96 98-197 5-101 (102)
35 cd02985 TRX_CDSP32 TRX family, 99.8 7.5E-18 1.6E-22 133.8 12.3 94 99-197 2-101 (103)
36 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 1.5E-17 3.3E-22 133.2 11.3 99 95-195 2-104 (104)
37 cd02998 PDI_a_ERp38 PDIa famil 99.7 1.5E-17 3.3E-22 133.4 11.2 100 95-195 2-105 (105)
38 cd02962 TMX2 TMX2 family; comp 99.7 3.7E-17 7.9E-22 137.4 13.8 90 93-184 28-126 (152)
39 cd02965 HyaE HyaE family; HyaE 99.7 2.8E-17 6.1E-22 128.5 11.0 97 93-192 10-109 (111)
40 cd02961 PDI_a_family Protein D 99.7 4.4E-17 9.6E-22 129.6 10.1 98 97-195 2-101 (101)
41 cd02992 PDI_a_QSOX PDIa family 99.7 1.5E-16 3.2E-21 128.5 12.3 99 94-192 2-109 (114)
42 TIGR01068 thioredoxin thioredo 99.7 2E-16 4.3E-21 125.9 12.8 99 98-199 1-101 (101)
43 cd02957 Phd_like Phosducin (Ph 99.7 1.8E-16 3.9E-21 128.3 11.7 88 93-185 4-95 (113)
44 TIGR02187 GlrX_arch Glutaredox 99.7 1.7E-15 3.7E-20 137.4 19.2 182 110-302 19-214 (215)
45 cd02989 Phd_like_TxnDC9 Phosdu 99.7 2.9E-16 6.3E-21 126.4 12.5 88 93-184 4-93 (113)
46 cd02950 TxlA TRX-like protein 99.7 4.2E-16 9.2E-21 130.9 12.9 98 100-200 10-111 (142)
47 cd02953 DsbDgamma DsbD gamma f 99.7 2.1E-16 4.5E-21 126.2 10.1 92 101-195 2-103 (104)
48 KOG0907 Thioredoxin [Posttrans 99.7 2.8E-16 6.1E-21 123.2 10.3 84 109-197 20-104 (106)
49 cd02984 TRX_PICOT TRX domain, 99.7 5E-16 1.1E-20 122.5 11.5 92 100-195 2-96 (97)
50 PLN00410 U5 snRNP protein, DIM 99.7 6.9E-16 1.5E-20 126.6 12.5 98 99-199 10-120 (142)
51 TIGR00424 APS_reduc 5'-adenyly 99.7 4.5E-16 9.9E-21 153.1 13.2 107 90-198 348-462 (463)
52 KOG0190 Protein disulfide isom 99.7 1.2E-16 2.6E-21 155.7 9.0 133 65-200 338-474 (493)
53 PLN02309 5'-adenylylsulfate re 99.7 7.5E-16 1.6E-20 151.6 13.9 107 90-198 342-456 (457)
54 PTZ00051 thioredoxin; Provisio 99.6 1.3E-15 2.8E-20 120.3 11.1 89 99-192 7-96 (98)
55 cd02986 DLP Dim1 family, Dim1- 99.6 1.2E-15 2.6E-20 119.0 10.2 77 101-180 3-81 (114)
56 cd02949 TRX_NTR TRX domain, no 99.6 2.1E-15 4.6E-20 118.5 11.9 88 106-196 9-97 (97)
57 PTZ00102 disulphide isomerase; 99.6 1.7E-15 3.8E-20 155.7 13.7 134 67-202 332-468 (477)
58 KOG1731 FAD-dependent sulfhydr 99.6 6.2E-15 1.3E-19 142.9 15.3 223 93-319 39-291 (606)
59 cd02987 Phd_like_Phd Phosducin 99.6 1.1E-14 2.4E-19 126.4 12.4 100 92-196 61-172 (175)
60 cd02975 PfPDO_like_N Pyrococcu 99.6 9.2E-15 2E-19 117.8 11.1 94 103-200 15-111 (113)
61 PRK14018 trifunctional thiored 99.6 2E-14 4.2E-19 143.5 14.5 89 109-199 55-173 (521)
62 TIGR01295 PedC_BrcD bacterioci 99.6 2.2E-14 4.8E-19 116.8 12.1 98 94-196 7-121 (122)
63 PRK15412 thiol:disulfide inter 99.6 5.7E-14 1.2E-18 124.2 15.3 87 108-200 66-177 (185)
64 cd02947 TRX_family TRX family; 99.6 3.8E-14 8.2E-19 110.5 11.8 90 102-195 2-92 (93)
65 cd02951 SoxW SoxW family; SoxW 99.6 4.9E-14 1.1E-18 116.6 12.1 97 101-200 4-120 (125)
66 KOG0908 Thioredoxin-like prote 99.5 3.6E-14 7.8E-19 123.1 10.1 97 100-201 9-108 (288)
67 PTZ00062 glutaredoxin; Provisi 99.5 5.3E-13 1.2E-17 117.5 16.4 111 99-223 5-117 (204)
68 cd03072 PDI_b'_ERp44 PDIb' fam 99.5 1.4E-13 3E-18 110.0 9.1 107 308-418 1-111 (111)
69 cd02988 Phd_like_VIAF Phosduci 99.5 2.8E-13 6.1E-18 119.1 11.7 107 68-184 60-170 (192)
70 cd02982 PDI_b'_family Protein 99.5 2.2E-13 4.9E-18 108.6 10.2 87 109-198 11-102 (103)
71 TIGR00411 redox_disulf_1 small 99.5 4E-13 8.7E-18 102.2 10.5 80 113-198 2-81 (82)
72 PRK03147 thiol-disulfide oxido 99.5 1.3E-12 2.8E-17 115.0 15.1 102 95-198 46-171 (173)
73 cd02952 TRP14_like Human TRX-r 99.5 3.1E-13 6.8E-18 108.2 9.8 93 99-194 8-117 (119)
74 KOG0191 Thioredoxin/protein di 99.5 6.5E-13 1.4E-17 131.6 14.3 169 315-499 38-209 (383)
75 TIGR02738 TrbB type-F conjugat 99.5 1.2E-12 2.6E-17 110.5 13.3 87 109-198 49-152 (153)
76 cd03006 PDI_a_EFP1_N PDIa fami 99.4 3.9E-13 8.5E-18 107.4 7.6 67 433-501 8-76 (113)
77 KOG0910 Thioredoxin-like prote 99.4 2.3E-13 5E-18 110.4 5.5 71 434-508 43-113 (150)
78 cd03008 TryX_like_RdCVF Trypar 99.4 1.7E-12 3.6E-17 108.2 10.4 76 109-184 24-130 (146)
79 PRK13728 conjugal transfer pro 99.4 7.5E-12 1.6E-16 107.3 13.4 83 114-201 73-173 (181)
80 cd02959 ERp19 Endoplasmic reti 99.4 1.6E-12 3.5E-17 105.2 6.9 96 101-198 10-112 (117)
81 cd03009 TryX_like_TryX_NRX Try 99.4 5.4E-12 1.2E-16 105.3 10.3 73 109-181 17-114 (131)
82 TIGR01130 ER_PDI_fam protein d 99.3 1.4E-09 3E-14 111.7 29.8 310 93-420 111-459 (462)
83 cd03003 PDI_a_ERdj5_N PDIa fam 99.3 1.8E-12 3.9E-17 102.8 6.1 66 435-503 2-67 (101)
84 TIGR00385 dsbE periplasmic pro 99.3 2.1E-11 4.6E-16 106.7 13.4 86 108-199 61-171 (173)
85 cd03004 PDI_a_ERdj5_C PDIa fam 99.3 1.8E-12 3.9E-17 103.5 5.3 67 435-503 2-68 (104)
86 cd02954 DIM1 Dim1 family; Dim1 99.3 1.8E-12 3.9E-17 102.4 5.1 64 441-508 2-66 (114)
87 cd02983 P5_C P5 family, C-term 99.3 2.9E-11 6.3E-16 99.4 11.7 112 306-422 2-122 (130)
88 cd02964 TryX_like_family Trypa 99.3 1.5E-11 3.3E-16 102.6 9.8 76 109-184 16-117 (132)
89 PF13905 Thioredoxin_8: Thiore 99.3 2.6E-11 5.7E-16 94.9 10.1 68 110-178 1-94 (95)
90 TIGR01626 ytfJ_HI0045 conserve 99.3 5.6E-11 1.2E-15 102.7 12.7 82 108-195 57-176 (184)
91 cd02995 PDI_a_PDI_a'_C PDIa fa 99.3 1E-11 2.2E-16 99.1 7.6 67 435-501 1-67 (104)
92 cd03010 TlpA_like_DsbE TlpA-li 99.3 2.5E-11 5.4E-16 100.7 9.9 78 109-191 24-126 (127)
93 TIGR02187 GlrX_arch Glutaredox 99.3 2.9E-11 6.2E-16 109.8 10.6 95 97-197 119-214 (215)
94 cd03002 PDI_a_MPD1_like PDI fa 99.3 7.1E-12 1.5E-16 101.0 5.7 71 436-508 2-72 (109)
95 cd02992 PDI_a_QSOX PDIa family 99.3 7E-12 1.5E-16 101.2 5.6 74 435-508 2-76 (114)
96 TIGR00412 redox_disulf_2 small 99.3 3.2E-11 7E-16 89.4 8.6 73 114-195 2-75 (76)
97 COG3118 Thioredoxin domain-con 99.2 5.4E-12 1.2E-16 113.9 4.9 72 434-509 23-96 (304)
98 cd02996 PDI_a_ERp44 PDIa famil 99.2 1.1E-11 2.4E-16 99.5 5.6 72 435-509 2-77 (108)
99 TIGR02740 TraF-like TraF-like 99.2 8.6E-11 1.9E-15 109.5 11.9 89 109-200 165-265 (271)
100 cd02962 TMX2 TMX2 family; comp 99.2 2.2E-11 4.7E-16 102.5 6.9 81 424-508 19-100 (152)
101 cd02955 SSP411 TRX domain, SSP 99.2 8.3E-11 1.8E-15 95.4 9.9 78 99-179 4-93 (124)
102 PHA02125 thioredoxin-like prot 99.2 9.8E-11 2.1E-15 86.7 9.5 68 114-193 2-71 (75)
103 cd03065 PDI_b_Calsequestrin_N 99.2 1.4E-11 3.1E-16 99.0 5.2 75 433-509 8-86 (120)
104 PF13098 Thioredoxin_2: Thiore 99.2 5.6E-11 1.2E-15 96.2 8.7 84 109-195 4-112 (112)
105 cd03011 TlpA_like_ScsD_MtbDsbE 99.2 1.1E-10 2.3E-15 96.4 9.6 92 97-193 7-120 (123)
106 PF00085 Thioredoxin: Thioredo 99.2 2.5E-11 5.4E-16 96.7 5.7 66 436-503 1-66 (103)
107 PRK09381 trxA thioredoxin; Pro 99.2 4.3E-11 9.3E-16 96.3 6.8 68 434-503 3-70 (109)
108 PRK00293 dipZ thiol:disulfide 99.2 1.2E-10 2.6E-15 120.4 11.3 96 99-198 459-569 (571)
109 PHA02278 thioredoxin-like prot 99.2 2.7E-11 5.8E-16 95.2 4.2 54 442-498 5-58 (103)
110 PTZ00056 glutathione peroxidas 99.2 2.5E-10 5.3E-15 101.7 10.8 104 96-201 25-180 (199)
111 PF13848 Thioredoxin_6: Thiore 99.2 5.7E-09 1.2E-13 92.7 19.7 167 127-302 7-184 (184)
112 cd02994 PDI_a_TMX PDIa family, 99.1 6.6E-11 1.4E-15 93.8 6.2 65 435-503 2-66 (101)
113 cd02993 PDI_a_APS_reductase PD 99.1 6.8E-11 1.5E-15 95.0 6.2 62 435-497 2-65 (109)
114 cd02956 ybbN ybbN protein fami 99.1 5.6E-11 1.2E-15 93.3 5.6 60 442-503 1-61 (96)
115 PLN00410 U5 snRNP protein, DIM 99.1 4.3E-11 9.3E-16 98.5 4.9 66 440-509 10-76 (142)
116 cd02957 Phd_like Phosducin (Ph 99.1 4.7E-11 1E-15 96.5 5.0 62 433-497 3-66 (113)
117 PLN02399 phospholipid hydroper 99.1 5.2E-10 1.1E-14 101.2 11.8 104 95-200 84-235 (236)
118 cd03001 PDI_a_P5 PDIa family, 99.1 7.4E-11 1.6E-15 93.9 5.5 66 436-503 2-67 (103)
119 cd02967 mauD Methylamine utili 99.1 2E-10 4.4E-15 93.3 8.0 73 109-184 20-112 (114)
120 cd02985 TRX_CDSP32 TRX family, 99.1 1.1E-10 2.4E-15 92.5 5.8 55 441-498 3-58 (103)
121 cd02963 TRX_DnaJ TRX domain, D 99.1 6.1E-11 1.3E-15 95.4 4.3 65 438-503 8-74 (111)
122 PLN02919 haloacid dehalogenase 99.1 3.8E-10 8.2E-15 124.6 11.6 90 109-200 419-537 (1057)
123 cd02966 TlpA_like_family TlpA- 99.1 4.5E-10 9.7E-15 91.2 9.3 74 109-184 18-116 (116)
124 cd02998 PDI_a_ERp38 PDIa famil 99.1 2.1E-10 4.5E-15 91.7 7.0 68 436-503 2-70 (105)
125 cd03005 PDI_a_ERp46 PDIa famil 99.1 1.4E-10 3.1E-15 92.1 6.0 66 436-503 2-68 (102)
126 cd02986 DLP Dim1 family, Dim1- 99.1 1.3E-10 2.9E-15 90.8 5.0 64 442-509 3-67 (114)
127 KOG0907 Thioredoxin [Posttrans 99.1 1.4E-10 3.1E-15 91.0 5.0 55 450-509 19-73 (106)
128 PF08534 Redoxin: Redoxin; In 99.1 1E-09 2.2E-14 93.5 10.7 88 98-187 16-136 (146)
129 cd03012 TlpA_like_DipZ_like Tl 99.1 7.1E-10 1.5E-14 91.7 9.4 75 109-185 22-125 (126)
130 PLN02412 probable glutathione 99.1 8.9E-10 1.9E-14 95.6 10.3 90 109-200 28-165 (167)
131 PTZ00443 Thioredoxin domain-co 99.1 1.4E-10 2.9E-15 104.2 5.2 72 433-508 29-104 (224)
132 cd02973 TRX_GRX_like Thioredox 99.1 4.1E-10 8.8E-15 81.7 6.5 57 113-173 2-58 (67)
133 cd02948 TRX_NDPK TRX domain, T 99.1 2.1E-10 4.6E-15 90.8 5.3 55 439-495 5-59 (102)
134 cd03073 PDI_b'_ERp72_ERp57 PDI 99.1 7.8E-10 1.7E-14 88.1 8.4 102 308-415 1-111 (111)
135 cd02997 PDI_a_PDIR PDIa family 99.0 3.8E-10 8.3E-15 90.0 6.4 72 436-508 2-73 (104)
136 cd02987 Phd_like_Phd Phosducin 99.0 2.5E-10 5.5E-15 99.2 5.6 86 408-497 37-125 (175)
137 TIGR02540 gpx7 putative glutat 99.0 2.6E-09 5.7E-14 91.5 11.4 88 109-198 21-152 (153)
138 cd02999 PDI_a_ERp44_like PDIa 99.0 3.1E-10 6.6E-15 89.3 5.0 55 442-499 7-63 (100)
139 PRK11509 hydrogenase-1 operon 99.0 5.4E-09 1.2E-13 84.6 12.1 107 95-203 19-128 (132)
140 cd02989 Phd_like_TxnDC9 Phosdu 99.0 5.1E-10 1.1E-14 90.1 5.5 67 433-503 3-70 (113)
141 cd03026 AhpF_NTD_C TRX-GRX-lik 99.0 3.3E-09 7.1E-14 81.0 8.9 76 109-191 11-86 (89)
142 cd00340 GSH_Peroxidase Glutath 99.0 2.7E-09 5.8E-14 91.3 9.4 43 109-154 21-63 (152)
143 TIGR02661 MauD methylamine deh 99.0 3.9E-09 8.4E-14 93.6 10.7 87 108-198 72-178 (189)
144 cd02965 HyaE HyaE family; HyaE 99.0 6.6E-10 1.4E-14 87.2 5.1 70 435-509 11-82 (111)
145 TIGR01126 pdi_dom protein disu 99.0 6.4E-10 1.4E-14 88.3 4.6 64 439-503 1-64 (102)
146 PRK10996 thioredoxin 2; Provis 98.9 1.4E-09 3E-14 91.2 5.6 71 433-508 34-104 (139)
147 TIGR00424 APS_reduc 5'-adenyly 98.9 1.5E-09 3.1E-14 107.5 5.9 66 433-499 350-417 (463)
148 TIGR01068 thioredoxin thioredo 98.9 1.6E-09 3.5E-14 85.7 4.9 62 440-503 2-63 (101)
149 cd02982 PDI_b'_family Protein 98.9 7E-09 1.5E-13 82.5 8.4 88 325-415 13-103 (103)
150 cd02981 PDI_b_family Protein D 98.9 1.2E-08 2.6E-13 80.1 9.5 95 204-303 2-97 (97)
151 cd03066 PDI_b_Calsequestrin_mi 98.9 1.5E-08 3.2E-13 80.0 10.0 98 203-304 2-101 (102)
152 COG2143 Thioredoxin-related pr 98.9 3.2E-08 6.9E-13 80.0 11.7 103 108-213 40-163 (182)
153 cd02958 UAS UAS family; UAS is 98.9 3.5E-08 7.5E-13 79.9 12.0 92 105-199 12-111 (114)
154 cd03069 PDI_b_ERp57 PDIb famil 98.9 1.3E-08 2.9E-13 80.5 9.2 95 203-303 2-103 (104)
155 cd02950 TxlA TRX-like protein 98.9 2.8E-09 6.1E-14 89.5 5.1 64 442-508 11-74 (142)
156 cd02984 TRX_PICOT TRX domain, 98.8 3.5E-09 7.7E-14 83.1 5.1 58 441-500 2-60 (97)
157 PLN02309 5'-adenylylsulfate re 98.8 3.8E-09 8.2E-14 104.6 6.0 63 433-496 344-408 (457)
158 KOG2501 Thioredoxin, nucleored 98.8 1.1E-08 2.3E-13 84.3 7.2 73 109-181 32-130 (157)
159 cd02952 TRP14_like Human TRX-r 98.8 4.5E-09 9.8E-14 84.2 4.8 55 442-498 10-72 (119)
160 cd02969 PRX_like1 Peroxiredoxi 98.8 5E-08 1.1E-12 85.4 11.9 91 109-202 24-155 (171)
161 cd03000 PDI_a_TMX3 PDIa family 98.8 6.5E-09 1.4E-13 82.7 5.6 59 442-502 7-66 (104)
162 PTZ00256 glutathione peroxidas 98.8 4.2E-08 9.2E-13 86.5 11.0 90 109-200 39-182 (183)
163 PF01216 Calsequestrin: Calseq 98.8 2.5E-06 5.5E-11 78.8 22.5 259 203-495 36-311 (383)
164 PF13899 Thioredoxin_7: Thiore 98.8 2.4E-08 5.1E-13 75.5 7.9 69 103-175 10-81 (82)
165 cd02988 Phd_like_VIAF Phosduci 98.8 6.6E-09 1.4E-13 91.5 5.0 83 410-497 60-144 (192)
166 PTZ00051 thioredoxin; Provisio 98.8 9.7E-09 2.1E-13 80.8 5.3 62 437-502 3-65 (98)
167 cd02961 PDI_a_family Protein D 98.8 9E-09 1.9E-13 81.3 4.8 65 438-503 2-66 (101)
168 KOG0913 Thiol-disulfide isomer 98.8 2E-09 4.4E-14 93.3 1.0 102 94-199 25-126 (248)
169 cd02949 TRX_NTR TRX domain, no 98.8 1.4E-08 3.1E-13 79.6 5.6 55 444-500 5-59 (97)
170 cd02953 DsbDgamma DsbD gamma f 98.8 7.8E-09 1.7E-13 82.3 4.1 53 443-498 3-58 (104)
171 cd03068 PDI_b_ERp72 PDIb famil 98.7 1E-07 2.2E-12 75.6 9.4 96 203-303 2-107 (107)
172 cd02960 AGR Anterior Gradient 98.7 4.2E-08 9.1E-13 79.4 6.6 80 103-186 16-100 (130)
173 COG4232 Thiol:disulfide interc 98.7 1.9E-07 4E-12 93.0 11.6 96 102-199 464-568 (569)
174 cd03017 PRX_BCP Peroxiredoxin 98.6 2.1E-07 4.6E-12 78.5 10.1 84 109-194 22-138 (140)
175 PF00578 AhpC-TSA: AhpC/TSA fa 98.6 2.4E-07 5.3E-12 76.3 10.1 72 109-182 24-123 (124)
176 KOG0908 Thioredoxin-like prote 98.6 3.4E-08 7.3E-13 86.4 4.9 60 441-503 9-69 (288)
177 TIGR01295 PedC_BrcD bacterioci 98.6 5.6E-08 1.2E-12 79.2 6.0 57 437-498 9-65 (122)
178 KOG0914 Thioredoxin-like prote 98.6 6.4E-08 1.4E-12 82.7 6.3 84 94-179 125-217 (265)
179 COG0526 TrxA Thiol-disulfide i 98.6 2.8E-07 6E-12 75.1 8.9 66 110-178 32-100 (127)
180 KOG1731 FAD-dependent sulfhydr 98.6 2.1E-08 4.5E-13 98.3 1.8 78 432-509 37-115 (606)
181 cd02975 PfPDO_like_N Pyrococcu 98.6 5.7E-08 1.2E-12 78.2 4.1 56 444-503 15-70 (113)
182 smart00594 UAS UAS domain. 98.6 4.9E-07 1.1E-11 73.9 9.6 87 106-195 23-121 (122)
183 PRK00522 tpx lipid hydroperoxi 98.6 6.3E-07 1.4E-11 77.8 10.7 66 109-178 43-142 (167)
184 TIGR02196 GlrX_YruB Glutaredox 98.5 5E-07 1.1E-11 66.7 7.9 68 114-195 2-73 (74)
185 cd02959 ERp19 Endoplasmic reti 98.5 1.8E-07 3.9E-12 75.7 5.8 48 449-498 16-63 (117)
186 KOG4277 Uncharacterized conser 98.5 3.1E-08 6.8E-13 88.7 1.4 56 452-509 43-99 (468)
187 cd02970 PRX_like2 Peroxiredoxi 98.5 8.9E-07 1.9E-11 75.5 10.4 45 110-156 24-68 (149)
188 PRK09437 bcp thioredoxin-depen 98.5 1.5E-06 3.3E-11 74.5 11.8 80 109-190 29-144 (154)
189 cd03007 PDI_a_ERp29_N PDIa fam 98.5 8.9E-08 1.9E-12 76.1 3.6 54 436-496 3-61 (116)
190 cd03015 PRX_Typ2cys Peroxiredo 98.5 1.1E-06 2.5E-11 76.8 11.0 88 109-198 28-156 (173)
191 PRK10606 btuE putative glutath 98.5 1.4E-06 3.1E-11 76.0 11.1 128 96-235 11-170 (183)
192 cd03008 TryX_like_RdCVF Trypar 98.5 2.3E-07 5E-12 77.5 5.9 48 451-498 24-77 (146)
193 TIGR03137 AhpC peroxiredoxin. 98.5 1.4E-06 3.1E-11 77.1 11.0 86 109-196 30-153 (187)
194 cd02951 SoxW SoxW family; SoxW 98.5 1.5E-07 3.2E-12 77.7 4.0 46 450-497 11-60 (125)
195 cd02947 TRX_family TRX family; 98.4 4.1E-07 8.9E-12 70.3 5.8 55 443-501 2-56 (93)
196 cd01659 TRX_superfamily Thiore 98.4 9.1E-07 2E-11 63.1 7.2 60 114-177 1-63 (69)
197 PF07912 ERp29_N: ERp29, N-ter 98.4 8.7E-06 1.9E-10 63.8 12.3 106 93-200 4-120 (126)
198 PF13905 Thioredoxin_8: Thiore 98.4 8.9E-07 1.9E-11 69.1 6.8 46 452-497 1-46 (95)
199 cd03014 PRX_Atyp2cys Peroxired 98.4 2.4E-06 5.2E-11 72.3 9.1 72 109-184 25-128 (143)
200 cd02968 SCO SCO (an acronym fo 98.3 1.9E-06 4.1E-11 72.8 8.2 46 109-154 21-68 (142)
201 KOG0912 Thiol-disulfide isomer 98.3 5.6E-05 1.2E-09 68.6 17.6 251 210-496 4-270 (375)
202 TIGR02200 GlrX_actino Glutared 98.3 2.5E-06 5.4E-11 63.5 7.9 69 114-195 2-75 (77)
203 PRK13190 putative peroxiredoxi 98.3 4.6E-06 1E-10 74.7 11.0 89 109-199 26-154 (202)
204 TIGR00411 redox_disulf_1 small 98.3 6.2E-07 1.3E-11 67.8 4.5 50 455-508 2-51 (82)
205 PTZ00062 glutaredoxin; Provisi 98.3 7.1E-07 1.5E-11 78.9 5.2 52 441-495 6-57 (204)
206 PRK10382 alkyl hydroperoxide r 98.3 5.6E-06 1.2E-10 72.8 10.4 87 109-197 30-154 (187)
207 cd03018 PRX_AhpE_like Peroxire 98.3 6.4E-06 1.4E-10 70.2 10.3 73 111-185 29-133 (149)
208 PF13728 TraF: F plasmid trans 98.3 6.8E-06 1.5E-10 73.9 10.8 83 110-195 120-214 (215)
209 cd02971 PRX_family Peroxiredox 98.3 4.7E-06 1E-10 70.2 9.4 76 109-186 21-130 (140)
210 PF02114 Phosducin: Phosducin; 98.3 5.3E-06 1.1E-10 76.7 10.1 101 93-198 125-237 (265)
211 cd02964 TryX_like_family Trypa 98.3 1.7E-06 3.7E-11 72.0 6.1 47 451-497 16-63 (132)
212 PRK15000 peroxidase; Provision 98.2 1.2E-05 2.6E-10 71.8 11.1 87 109-197 33-160 (200)
213 PHA02125 thioredoxin-like prot 98.2 9.5E-07 2.1E-11 65.3 3.3 36 456-499 2-37 (75)
214 KOG1672 ATP binding protein [P 98.2 3.5E-06 7.5E-11 71.2 6.5 86 95-184 68-155 (211)
215 cd03009 TryX_like_TryX_NRX Try 98.2 3E-06 6.5E-11 70.5 6.1 47 451-497 17-64 (131)
216 PF13192 Thioredoxin_3: Thiore 98.2 1.8E-05 3.9E-10 58.5 9.1 72 116-196 4-76 (76)
217 cd02973 TRX_GRX_like Thioredox 98.2 2.1E-06 4.6E-11 61.9 4.0 42 456-500 3-44 (67)
218 TIGR02738 TrbB type-F conjugat 98.1 4.1E-06 8.9E-11 70.9 5.7 42 452-497 50-91 (153)
219 cd03016 PRX_1cys Peroxiredoxin 98.1 2.7E-05 5.9E-10 69.9 11.2 85 112-198 28-153 (203)
220 cd02955 SSP411 TRX domain, SSP 98.1 6.4E-06 1.4E-10 67.0 6.2 49 449-499 12-63 (124)
221 cd03074 PDI_b'_Calsequestrin_C 98.1 2.5E-05 5.5E-10 59.0 8.6 109 306-415 1-120 (120)
222 KOG0911 Glutaredoxin-related p 98.1 3.4E-05 7.4E-10 67.3 10.4 79 106-188 13-92 (227)
223 cd02967 mauD Methylamine utili 98.1 5.4E-06 1.2E-10 67.0 5.3 40 451-492 20-59 (114)
224 PRK13189 peroxiredoxin; Provis 98.1 3.7E-05 7.9E-10 69.8 10.9 88 109-198 34-162 (222)
225 PF13899 Thioredoxin_7: Thiore 98.1 4E-06 8.6E-11 63.2 3.9 48 449-498 14-64 (82)
226 PTZ00137 2-Cys peroxiredoxin; 98.1 3.7E-05 7.9E-10 70.9 10.8 87 109-197 97-223 (261)
227 TIGR00412 redox_disulf_2 small 98.1 6.2E-06 1.4E-10 61.0 4.8 36 456-493 2-37 (76)
228 TIGR02180 GRX_euk Glutaredoxin 98.0 8.8E-06 1.9E-10 61.7 5.4 58 114-178 1-63 (84)
229 PRK13599 putative peroxiredoxi 98.0 5.7E-05 1.2E-09 68.1 11.1 88 109-198 27-155 (215)
230 PF14595 Thioredoxin_9: Thiore 98.0 2.8E-05 6E-10 63.8 8.2 75 110-188 41-119 (129)
231 TIGR02739 TraF type-F conjugat 98.0 6.6E-05 1.4E-09 68.7 11.3 85 110-199 150-248 (256)
232 PRK15412 thiol:disulfide inter 98.0 1.1E-05 2.4E-10 71.3 6.1 43 450-497 66-108 (185)
233 cd02991 UAS_ETEA UAS family, E 98.0 0.00011 2.3E-09 59.2 11.0 89 107-199 14-113 (116)
234 PF03190 Thioredox_DsbH: Prote 98.0 4.9E-05 1.1E-09 64.0 9.0 81 96-179 23-115 (163)
235 PRK13191 putative peroxiredoxi 98.0 6.6E-05 1.4E-09 67.7 10.6 88 109-198 32-160 (215)
236 PRK00293 dipZ thiol:disulfide 98.0 6.5E-06 1.4E-10 85.6 4.5 58 440-500 459-522 (571)
237 PRK14018 trifunctional thiored 98.0 2.4E-05 5.3E-10 79.0 8.4 46 448-494 52-97 (521)
238 PF06110 DUF953: Eukaryotic pr 98.0 4.6E-05 1E-09 60.9 8.2 74 101-177 6-99 (119)
239 cd03010 TlpA_like_DsbE TlpA-li 97.9 2.1E-05 4.5E-10 65.0 6.2 40 452-495 25-64 (127)
240 KOG2603 Oligosaccharyltransfer 97.9 6.4E-05 1.4E-09 68.7 9.4 112 91-202 38-169 (331)
241 TIGR03143 AhpF_homolog putativ 97.9 0.00078 1.7E-08 70.5 18.9 177 110-300 366-554 (555)
242 PTZ00056 glutathione peroxidas 97.9 2.3E-05 5E-10 69.9 6.2 44 451-495 38-81 (199)
243 cd03012 TlpA_like_DipZ_like Tl 97.9 2.4E-05 5.2E-10 64.5 5.7 43 451-494 22-64 (126)
244 PRK11200 grxA glutaredoxin 1; 97.9 0.00011 2.4E-09 55.8 8.7 76 113-199 2-83 (85)
245 PTZ00253 tryparedoxin peroxida 97.8 0.00019 4.1E-09 64.2 11.3 87 109-197 35-162 (199)
246 PRK13703 conjugal pilus assemb 97.8 0.00012 2.6E-09 66.6 10.0 87 110-199 143-241 (248)
247 cd03072 PDI_b'_ERp44 PDIb' fam 97.8 0.00018 3.9E-09 57.4 9.9 101 95-200 1-109 (111)
248 cd02966 TlpA_like_family TlpA- 97.8 3.7E-05 7.9E-10 61.9 6.1 45 452-497 19-63 (116)
249 cd02981 PDI_b_family Protein D 97.8 0.00015 3.3E-09 56.5 9.3 87 101-197 8-96 (97)
250 cd00340 GSH_Peroxidase Glutath 97.8 3.1E-05 6.6E-10 66.2 5.6 42 452-495 22-63 (152)
251 cd02960 AGR Anterior Gradient 97.8 4.9E-05 1.1E-09 61.7 6.4 51 443-495 11-67 (130)
252 KOG0914 Thioredoxin-like prote 97.8 2.8E-05 6.1E-10 66.9 4.6 74 433-509 123-198 (265)
253 TIGR02540 gpx7 putative glutat 97.8 4E-05 8.8E-10 65.5 5.5 42 452-494 22-63 (153)
254 TIGR02740 TraF-like TraF-like 97.8 4.2E-05 9.2E-10 71.5 6.0 44 451-498 165-208 (271)
255 PF08534 Redoxin: Redoxin; In 97.8 4.3E-05 9.3E-10 64.9 5.5 47 451-498 27-74 (146)
256 KOG3425 Uncharacterized conser 97.8 0.00011 2.4E-09 57.0 7.0 73 101-176 13-104 (128)
257 TIGR00385 dsbE periplasmic pro 97.8 5.4E-05 1.2E-09 66.2 6.1 40 451-495 62-101 (173)
258 PRK13728 conjugal transfer pro 97.7 4.6E-05 9.9E-10 65.8 5.3 38 456-497 73-110 (181)
259 PRK03147 thiol-disulfide oxido 97.7 9.6E-05 2.1E-09 64.7 7.2 60 436-497 46-105 (173)
260 PLN02399 phospholipid hydroper 97.7 5.7E-05 1.2E-09 68.6 5.7 43 452-495 99-141 (236)
261 cd02976 NrdH NrdH-redoxin (Nrd 97.7 0.00019 4.2E-09 52.4 7.6 67 114-194 2-72 (73)
262 PRK10877 protein disulfide iso 97.7 0.00013 2.9E-09 66.6 8.0 83 109-198 106-230 (232)
263 cd03071 PDI_b'_NRX PDIb' famil 97.7 0.00019 4.2E-09 54.3 7.1 100 311-415 4-115 (116)
264 cd03073 PDI_b'_ERp72_ERp57 PDI 97.7 0.00043 9.3E-09 55.2 9.5 98 97-198 3-110 (111)
265 cd02983 P5_C P5 family, C-term 97.6 0.0017 3.6E-08 53.5 12.6 108 94-203 3-119 (130)
266 PF00462 Glutaredoxin: Glutare 97.6 0.00038 8.3E-09 48.7 7.4 54 114-178 1-58 (60)
267 PLN02412 probable glutathione 97.6 0.00011 2.3E-09 63.8 5.2 43 452-495 29-71 (167)
268 TIGR02661 MauD methylamine deh 97.6 0.00011 2.4E-09 65.2 5.4 39 451-491 73-111 (189)
269 cd03070 PDI_b_ERp44 PDIb famil 97.5 0.00037 7.9E-09 52.6 6.8 83 203-292 1-85 (91)
270 PTZ00256 glutathione peroxidas 97.5 0.00016 3.4E-09 63.8 5.6 43 452-495 40-83 (183)
271 cd03020 DsbA_DsbC_DsbG DsbA fa 97.5 0.00042 9.1E-09 62.0 8.3 78 110-195 77-197 (197)
272 PF13098 Thioredoxin_2: Thiore 97.5 9.2E-05 2E-09 59.6 3.5 47 450-498 3-52 (112)
273 TIGR03143 AhpF_homolog putativ 97.5 0.00054 1.2E-08 71.7 10.0 91 98-195 463-554 (555)
274 KOG3414 Component of the U4/U6 97.5 0.0012 2.6E-08 51.8 9.2 77 100-179 11-89 (142)
275 cd03023 DsbA_Com1_like DsbA fa 97.5 0.00094 2E-08 57.0 9.7 31 109-139 4-34 (154)
276 cd03067 PDI_b_PDIR_N PDIb fami 97.4 0.0011 2.5E-08 49.8 8.0 93 100-196 9-109 (112)
277 PF11009 DUF2847: Protein of u 97.4 0.0024 5.3E-08 49.5 10.2 90 99-191 6-104 (105)
278 cd02958 UAS UAS family; UAS is 97.4 0.00019 4.1E-09 57.9 4.3 56 442-499 4-65 (114)
279 PF13462 Thioredoxin_4: Thiore 97.4 0.0026 5.6E-08 54.8 11.6 84 109-197 11-162 (162)
280 cd02969 PRX_like1 Peroxiredoxi 97.4 0.00031 6.7E-09 61.3 5.7 45 451-496 24-68 (171)
281 cd03011 TlpA_like_ScsD_MtbDsbE 97.4 0.00018 3.9E-09 59.0 4.0 42 439-481 8-49 (123)
282 COG0526 TrxA Thiol-disulfide i 97.4 0.00034 7.4E-09 56.4 5.6 42 452-495 32-73 (127)
283 cd03026 AhpF_NTD_C TRX-GRX-lik 97.3 0.00016 3.4E-09 55.2 2.9 42 455-499 15-56 (89)
284 PLN02919 haloacid dehalogenase 97.3 0.00028 6E-09 78.8 5.9 42 451-493 419-460 (1057)
285 PRK15317 alkyl hydroperoxide r 97.3 0.0014 3E-08 68.1 9.8 97 97-200 102-199 (517)
286 smart00594 UAS UAS domain. 97.3 0.00045 9.8E-09 56.4 4.9 68 439-508 11-84 (122)
287 COG4232 Thiol:disulfide interc 97.2 0.00016 3.4E-09 72.6 2.2 67 437-503 457-525 (569)
288 TIGR02183 GRXA Glutaredoxin, G 97.2 0.00072 1.6E-08 51.3 5.3 75 114-199 2-82 (86)
289 cd02968 SCO SCO (an acronym fo 97.2 0.00073 1.6E-08 56.9 5.8 47 451-497 21-70 (142)
290 cd03419 GRX_GRXh_1_2_like Glut 97.2 0.00092 2E-08 50.2 5.7 56 114-178 2-62 (82)
291 PF00578 AhpC-TSA: AhpC/TSA fa 97.2 0.001 2.3E-08 54.4 6.5 47 451-498 24-71 (124)
292 PF07449 HyaE: Hydrogenase-1 e 97.2 0.0026 5.7E-08 49.6 8.1 92 93-188 9-104 (107)
293 PRK10954 periplasmic protein d 97.1 0.0062 1.3E-07 54.9 11.4 39 110-151 37-78 (207)
294 KOG2501 Thioredoxin, nucleored 97.1 0.00054 1.2E-08 56.9 4.0 47 451-497 32-79 (157)
295 PRK11657 dsbG disulfide isomer 97.1 0.0048 1.1E-07 57.2 10.7 82 110-196 117-249 (251)
296 PF02966 DIM1: Mitosis protein 97.1 0.0053 1.2E-07 49.1 9.2 76 100-179 8-86 (133)
297 cd02970 PRX_like2 Peroxiredoxi 97.1 0.0011 2.3E-08 56.3 5.7 43 454-497 26-68 (149)
298 KOG3425 Uncharacterized conser 97.0 0.0018 3.9E-08 50.4 5.7 55 442-498 13-77 (128)
299 TIGR02190 GlrX-dom Glutaredoxi 97.0 0.002 4.4E-08 47.9 6.0 56 112-178 8-66 (79)
300 PRK10606 btuE putative glutath 97.0 0.0012 2.5E-08 57.8 5.2 42 452-495 25-66 (183)
301 PHA03050 glutaredoxin; Provisi 97.0 0.0032 7E-08 49.8 7.0 63 104-172 7-74 (108)
302 PRK11509 hydrogenase-1 operon 97.0 0.0054 1.2E-07 50.0 8.3 106 303-418 17-127 (132)
303 cd03014 PRX_Atyp2cys Peroxired 96.9 0.0017 3.6E-08 54.8 5.4 42 452-496 26-68 (143)
304 cd01659 TRX_superfamily Thiore 96.9 0.0018 3.9E-08 45.5 4.8 42 456-500 1-42 (69)
305 cd02066 GRX_family Glutaredoxi 96.9 0.0034 7.3E-08 45.4 6.3 54 114-178 2-59 (72)
306 TIGR02194 GlrX_NrdH Glutaredox 96.9 0.0025 5.5E-08 46.4 5.5 67 114-193 1-70 (72)
307 PRK10329 glutaredoxin-like pro 96.9 0.0091 2E-07 44.6 8.5 71 114-198 3-76 (81)
308 cd03018 PRX_AhpE_like Peroxire 96.9 0.0018 4E-08 54.9 5.4 42 453-495 29-71 (149)
309 PRK00522 tpx lipid hydroperoxi 96.9 0.0019 4.2E-08 55.9 5.5 42 452-496 44-86 (167)
310 TIGR03137 AhpC peroxiredoxin. 96.9 0.0016 3.5E-08 57.6 5.0 44 452-496 31-75 (187)
311 cd03067 PDI_b_PDIR_N PDIb fami 96.8 0.0047 1E-07 46.5 6.5 88 325-413 20-110 (112)
312 TIGR02181 GRX_bact Glutaredoxi 96.8 0.0025 5.5E-08 47.4 5.1 54 114-178 1-58 (79)
313 cd03015 PRX_Typ2cys Peroxiredo 96.8 0.0019 4E-08 56.5 5.1 44 452-496 29-73 (173)
314 TIGR01626 ytfJ_HI0045 conserve 96.8 0.0011 2.3E-08 57.8 3.2 28 452-479 59-86 (184)
315 TIGR03140 AhpF alkyl hydropero 96.7 0.0087 1.9E-07 62.2 10.0 99 96-201 102-201 (515)
316 cd03017 PRX_BCP Peroxiredoxin 96.7 0.0023 4.9E-08 53.7 4.7 44 452-496 23-67 (140)
317 cd02971 PRX_family Peroxiredox 96.7 0.0027 5.8E-08 53.2 5.2 44 451-495 21-65 (140)
318 TIGR02180 GRX_euk Glutaredoxin 96.7 0.0019 4E-08 48.7 3.7 38 456-497 1-38 (84)
319 PF05768 DUF836: Glutaredoxin- 96.7 0.0053 1.2E-07 45.9 6.0 77 114-196 2-81 (81)
320 TIGR02196 GlrX_YruB Glutaredox 96.7 0.0026 5.7E-08 46.3 4.4 36 456-499 2-37 (74)
321 cd03019 DsbA_DsbA DsbA family, 96.7 0.011 2.3E-07 51.9 8.9 33 109-141 14-46 (178)
322 cd03418 GRX_GRXb_1_3_like Glut 96.6 0.0062 1.3E-07 44.7 6.1 54 114-178 2-60 (75)
323 PF06110 DUF953: Eukaryotic pr 96.6 0.0059 1.3E-07 48.9 6.2 51 443-495 7-67 (119)
324 TIGR02189 GlrX-like_plant Glut 96.6 0.0049 1.1E-07 48.1 5.5 53 114-177 10-69 (99)
325 TIGR00365 monothiol glutaredox 96.6 0.0091 2E-07 46.3 6.9 60 103-172 5-72 (97)
326 cd03027 GRX_DEP Glutaredoxin ( 96.6 0.0076 1.6E-07 44.0 6.1 49 114-171 3-55 (73)
327 TIGR02200 GlrX_actino Glutared 96.6 0.0032 6.9E-08 46.5 4.1 36 456-499 2-37 (77)
328 KOG0913 Thiol-disulfide isomer 96.5 0.00078 1.7E-08 59.2 0.5 65 435-503 25-89 (248)
329 cd03069 PDI_b_ERp57 PDIb famil 96.4 0.042 9E-07 43.3 10.0 89 99-198 7-103 (104)
330 cd03029 GRX_hybridPRX5 Glutare 96.3 0.013 2.8E-07 42.6 6.1 66 114-195 3-71 (72)
331 cd03066 PDI_b_Calsequestrin_mi 96.3 0.074 1.6E-06 41.7 10.7 93 96-198 3-100 (102)
332 PRK10382 alkyl hydroperoxide r 96.3 0.0072 1.6E-07 53.2 5.2 44 452-496 31-75 (187)
333 PRK11200 grxA glutaredoxin 1; 96.3 0.0065 1.4E-07 45.9 4.3 40 455-497 2-41 (85)
334 COG1225 Bcp Peroxiredoxin [Pos 96.2 0.051 1.1E-06 45.7 9.7 89 108-198 28-155 (157)
335 PRK09437 bcp thioredoxin-depen 96.1 0.0087 1.9E-07 51.1 5.0 44 451-495 29-73 (154)
336 PRK15317 alkyl hydroperoxide r 96.1 0.057 1.2E-06 56.2 11.7 142 326-503 21-164 (517)
337 cd03028 GRX_PICOT_like Glutare 96.0 0.022 4.9E-07 43.5 6.2 48 120-178 21-72 (90)
338 cd02972 DsbA_family DsbA famil 96.0 0.021 4.5E-07 44.0 6.1 59 114-175 1-91 (98)
339 COG0695 GrxC Glutaredoxin and 96.0 0.023 4.9E-07 42.3 5.8 51 114-173 3-59 (80)
340 PRK10638 glutaredoxin 3; Provi 95.9 0.022 4.8E-07 42.8 5.8 54 114-178 4-61 (83)
341 PF00837 T4_deiodinase: Iodoth 95.9 0.068 1.5E-06 47.9 9.5 56 86-141 75-133 (237)
342 KOG2640 Thioredoxin [Function 95.9 0.0086 1.9E-07 55.2 3.8 88 110-201 76-164 (319)
343 PRK13190 putative peroxiredoxi 95.9 0.013 2.7E-07 52.6 4.9 44 452-496 27-71 (202)
344 PRK15000 peroxidase; Provision 95.8 0.015 3.2E-07 52.0 5.2 45 451-496 33-78 (200)
345 PF07912 ERp29_N: ERp29, N-ter 95.8 0.18 3.8E-06 40.1 10.3 104 309-413 7-117 (126)
346 PF13743 Thioredoxin_5: Thiore 95.7 0.043 9.4E-07 47.9 7.3 26 116-141 2-27 (176)
347 PF03190 Thioredox_DsbH: Prote 95.7 0.0097 2.1E-07 50.4 3.1 50 449-500 34-86 (163)
348 PRK13191 putative peroxiredoxi 95.6 0.018 3.9E-07 52.0 4.8 45 452-497 33-78 (215)
349 COG3019 Predicted metal-bindin 95.4 0.31 6.7E-06 39.4 10.4 75 113-199 27-104 (149)
350 KOG3170 Conserved phosducin-li 95.4 0.14 3.1E-06 44.0 9.0 78 93-177 91-171 (240)
351 PTZ00137 2-Cys peroxiredoxin; 95.3 0.031 6.6E-07 51.8 5.3 44 452-496 98-142 (261)
352 PRK13599 putative peroxiredoxi 95.3 0.025 5.4E-07 51.1 4.5 44 452-496 28-72 (215)
353 cd03016 PRX_1cys Peroxiredoxin 95.2 0.026 5.6E-07 50.7 4.5 43 453-496 26-69 (203)
354 TIGR02183 GRXA Glutaredoxin, G 95.1 0.026 5.7E-07 42.7 3.7 39 456-497 2-40 (86)
355 PRK10824 glutaredoxin-4; Provi 95.0 0.07 1.5E-06 42.5 6.0 62 102-173 7-76 (115)
356 TIGR03140 AhpF alkyl hydropero 95.0 0.25 5.5E-06 51.3 11.8 144 325-503 20-165 (515)
357 cd02066 GRX_family Glutaredoxi 94.9 0.034 7.5E-07 40.0 3.7 35 456-498 2-36 (72)
358 cd02976 NrdH NrdH-redoxin (Nrd 94.9 0.045 9.7E-07 39.5 4.2 34 456-497 2-35 (73)
359 cd03013 PRX5_like Peroxiredoxi 94.8 0.08 1.7E-06 45.2 6.3 56 108-165 28-88 (155)
360 KOG1752 Glutaredoxin and relat 94.8 0.17 3.8E-06 39.4 7.4 62 103-173 7-73 (104)
361 cd03419 GRX_GRXh_1_2_like Glut 94.7 0.045 9.8E-07 40.8 3.9 36 456-497 2-37 (82)
362 PRK13189 peroxiredoxin; Provis 94.7 0.044 9.6E-07 49.8 4.5 44 452-496 35-79 (222)
363 PF13728 TraF: F plasmid trans 94.6 0.071 1.5E-06 48.1 5.6 43 452-498 120-162 (215)
364 PF08139 LPAM_1: Prokaryotic m 94.6 0.02 4.4E-07 31.3 1.3 12 11-22 14-25 (25)
365 COG1999 Uncharacterized protei 94.5 1.1 2.4E-05 40.1 13.2 101 100-200 57-205 (207)
366 PTZ00253 tryparedoxin peroxida 94.5 0.064 1.4E-06 47.9 5.1 45 452-497 36-81 (199)
367 PF02114 Phosducin: Phosducin; 94.3 0.082 1.8E-06 49.2 5.5 84 408-496 100-187 (265)
368 PF14595 Thioredoxin_9: Thiore 94.3 0.036 7.9E-07 45.4 2.8 31 452-482 41-71 (129)
369 KOG0911 Glutaredoxin-related p 94.1 0.011 2.3E-07 52.0 -0.6 51 450-503 15-65 (227)
370 PF00462 Glutaredoxin: Glutare 94.1 0.071 1.5E-06 37.0 3.6 35 456-498 1-35 (60)
371 PRK09810 entericidin A; Provis 93.9 0.053 1.2E-06 33.8 2.2 23 1-24 1-23 (41)
372 cd03023 DsbA_Com1_like DsbA fa 93.7 0.15 3.2E-06 43.2 5.7 40 452-494 5-44 (154)
373 KOG3171 Conserved phosducin-li 93.4 0.21 4.5E-06 43.5 5.8 100 94-198 139-250 (273)
374 TIGR02739 TraF type-F conjugat 93.3 0.18 4E-06 46.4 5.7 46 452-501 150-195 (256)
375 PRK12759 bifunctional gluaredo 93.2 0.19 4E-06 50.4 6.2 51 114-173 4-66 (410)
376 TIGR02189 GlrX-like_plant Glut 93.0 0.13 2.8E-06 40.0 3.8 34 456-497 10-43 (99)
377 cd02991 UAS_ETEA UAS family, E 93.0 0.1 2.3E-06 41.9 3.3 57 443-502 5-68 (116)
378 TIGR02190 GlrX-dom Glutaredoxi 93.0 0.15 3.3E-06 37.7 4.0 37 453-497 7-43 (79)
379 cd03027 GRX_DEP Glutaredoxin ( 92.8 0.19 4.2E-06 36.4 4.3 35 456-498 3-37 (73)
380 KOG1672 ATP binding protein [P 92.7 0.32 6.9E-06 41.9 5.9 67 433-503 65-132 (211)
381 PRK10329 glutaredoxin-like pro 92.7 0.22 4.7E-06 37.1 4.4 35 456-498 3-37 (81)
382 cd03068 PDI_b_ERp72 PDIb famil 92.7 1.6 3.4E-05 34.5 9.6 89 99-197 7-106 (107)
383 PF01323 DSBA: DSBA-like thior 92.3 1.6 3.4E-05 38.6 10.4 37 113-151 1-37 (193)
384 cd03418 GRX_GRXb_1_3_like Glut 92.2 0.28 6.1E-06 35.7 4.5 34 456-497 2-35 (75)
385 PRK13703 conjugal pilus assemb 92.1 0.32 6.9E-06 44.6 5.6 41 452-496 143-183 (248)
386 PF02966 DIM1: Mitosis protein 91.8 0.91 2E-05 36.6 7.1 55 443-501 10-65 (133)
387 TIGR02181 GRX_bact Glutaredoxi 91.7 0.2 4.3E-06 37.1 3.2 35 456-498 1-35 (79)
388 KOG3170 Conserved phosducin-li 91.6 0.43 9.3E-06 41.2 5.4 81 409-494 68-150 (240)
389 PHA03050 glutaredoxin; Provisi 91.5 0.18 3.9E-06 39.9 2.9 24 455-478 14-37 (108)
390 cd03029 GRX_hybridPRX5 Glutare 91.5 0.35 7.7E-06 34.9 4.3 35 456-498 3-37 (72)
391 TIGR02194 GlrX_NrdH Glutaredox 91.3 0.31 6.8E-06 35.2 3.9 36 456-499 1-36 (72)
392 PRK10081 entericidin B membran 91.3 0.2 4.4E-06 32.3 2.4 24 1-24 1-26 (48)
393 TIGR00365 monothiol glutaredox 91.2 0.32 7E-06 37.6 4.1 39 452-498 11-53 (97)
394 PF13462 Thioredoxin_4: Thiore 91.2 0.68 1.5E-05 39.5 6.6 44 452-495 12-55 (162)
395 PRK09973 putative outer membra 91.0 0.19 4E-06 37.1 2.3 23 1-23 1-23 (85)
396 COG1331 Highly conserved prote 90.7 0.6 1.3E-05 48.5 6.5 82 95-179 28-121 (667)
397 cd03019 DsbA_DsbA DsbA family, 90.7 0.48 1E-05 41.3 5.2 44 451-496 14-57 (178)
398 PF02630 SCO1-SenC: SCO1/SenC; 90.4 1 2.2E-05 39.2 6.9 57 99-155 41-98 (174)
399 cd02972 DsbA_family DsbA famil 90.3 0.62 1.3E-05 35.5 5.1 41 456-498 1-41 (98)
400 COG5510 Predicted small secret 90.0 0.34 7.3E-06 30.3 2.5 24 1-24 1-26 (44)
401 cd03028 GRX_PICOT_like Glutare 89.8 0.56 1.2E-05 35.7 4.2 38 452-497 7-48 (90)
402 COG5567 Predicted small peripl 89.5 0.34 7.4E-06 31.9 2.3 24 1-24 1-24 (58)
403 COG0695 GrxC Glutaredoxin and 89.0 0.6 1.3E-05 34.6 3.7 36 456-499 3-38 (80)
404 PF11009 DUF2847: Protein of u 88.5 0.21 4.5E-06 38.9 1.0 61 441-503 7-68 (105)
405 PRK10638 glutaredoxin 3; Provi 88.4 0.66 1.4E-05 34.7 3.7 35 456-498 4-38 (83)
406 PF02402 Lysis_col: Lysis prot 88.3 0.2 4.4E-06 31.2 0.6 22 1-23 1-22 (46)
407 cd02974 AhpF_NTD_N Alkyl hydro 87.1 7.7 0.00017 29.7 8.9 73 110-198 19-93 (94)
408 PRK10824 glutaredoxin-4; Provi 86.9 0.82 1.8E-05 36.5 3.5 38 452-497 14-55 (115)
409 cd03031 GRX_GRX_like Glutaredo 86.8 2.2 4.7E-05 35.8 6.2 51 114-173 2-66 (147)
410 cd03013 PRX5_like Peroxiredoxi 86.6 1.2 2.7E-05 37.8 4.8 41 454-495 32-74 (155)
411 PRK15396 murein lipoprotein; P 86.5 0.59 1.3E-05 34.1 2.3 23 1-23 1-24 (78)
412 PF13192 Thioredoxin_3: Thiore 85.6 0.97 2.1E-05 33.1 3.2 33 459-495 5-37 (76)
413 COG1651 DsbG Protein-disulfide 85.4 5.4 0.00012 36.8 8.9 37 158-198 206-242 (244)
414 PRK13792 lysozyme inhibitor; P 85.2 0.55 1.2E-05 37.9 1.8 24 1-25 1-24 (127)
415 KOG2792 Putative cytochrome C 85.1 6 0.00013 36.0 8.3 92 109-200 138-276 (280)
416 PF05768 DUF836: Glutaredoxin- 84.9 0.52 1.1E-05 35.1 1.5 44 456-503 2-45 (81)
417 KOG3414 Component of the U4/U6 84.5 3.1 6.6E-05 33.2 5.5 52 442-495 12-64 (142)
418 PRK10954 periplasmic protein d 84.5 1.4 2.9E-05 39.7 4.3 42 452-495 37-81 (207)
419 cd02978 KaiB_like KaiB-like fa 83.3 7.2 0.00016 28.1 6.6 64 112-177 2-65 (72)
420 KOG2603 Oligosaccharyltransfer 83.3 24 0.00052 33.3 11.6 117 295-416 29-167 (331)
421 KOG1752 Glutaredoxin and relat 83.2 2.3 4.9E-05 33.3 4.4 36 453-495 14-49 (104)
422 cd03020 DsbA_DsbC_DsbG DsbA fa 83.1 2 4.4E-05 38.2 4.8 25 452-476 77-101 (197)
423 COG2143 Thioredoxin-related pr 82.1 3.8 8.2E-05 34.1 5.4 45 451-497 41-88 (182)
424 TIGR02654 circ_KaiB circadian 81.8 7.1 0.00015 29.2 6.3 76 111-188 3-78 (87)
425 COG0386 BtuE Glutathione perox 81.3 28 0.00061 29.2 10.1 77 94-174 9-97 (162)
426 cd03060 GST_N_Omega_like GST_N 81.1 8.6 0.00019 27.4 6.7 51 115-172 2-53 (71)
427 cd03041 GST_N_2GST_N GST_N fam 81.0 16 0.00035 26.5 8.2 71 114-198 2-76 (77)
428 cd02977 ArsC_family Arsenate R 80.9 1.9 4.1E-05 33.8 3.4 37 456-500 1-37 (105)
429 PRK09301 circadian clock prote 80.9 7.4 0.00016 30.1 6.3 77 110-188 5-81 (103)
430 PF07172 GRP: Glycine rich pro 80.8 1.5 3.2E-05 33.6 2.6 9 11-19 13-21 (95)
431 PF13627 LPAM_2: Prokaryotic l 80.1 1.5 3.3E-05 23.9 1.7 16 9-24 4-19 (24)
432 PRK11616 hypothetical protein; 80.1 1.4 3.1E-05 34.1 2.2 24 1-24 1-24 (109)
433 PF00837 T4_deiodinase: Iodoth 80.0 6 0.00013 35.8 6.4 61 433-493 81-143 (237)
434 PRK13733 conjugal transfer pro 79.0 1.4 3E-05 37.3 2.0 22 1-23 1-22 (171)
435 PRK11548 outer membrane biogen 78.6 1.6 3.4E-05 34.9 2.2 22 1-22 1-22 (113)
436 COG0450 AhpC Peroxiredoxin [Po 76.9 26 0.00057 30.6 9.2 88 111-198 34-160 (194)
437 cd03040 GST_N_mPGES2 GST_N fam 76.3 26 0.00057 25.2 8.5 74 114-200 2-77 (77)
438 cd02977 ArsC_family Arsenate R 76.1 2.9 6.2E-05 32.8 3.1 32 115-155 2-33 (105)
439 PRK10877 protein disulfide iso 76.0 3.3 7.1E-05 37.9 3.8 28 451-478 106-133 (232)
440 PF04592 SelP_N: Selenoprotein 75.2 6.5 0.00014 35.4 5.2 47 109-155 25-72 (238)
441 cd03036 ArsC_like Arsenate Red 74.6 4.8 0.0001 32.0 4.0 36 457-500 2-37 (111)
442 PF13417 GST_N_3: Glutathione 74.6 29 0.00063 24.9 10.0 73 116-202 1-74 (75)
443 PF11839 DUF3359: Protein of u 73.9 2.7 5.9E-05 31.9 2.2 23 1-24 1-23 (96)
444 cd03035 ArsC_Yffb Arsenate Red 73.7 3.1 6.6E-05 32.7 2.6 36 456-499 1-36 (105)
445 COG1225 Bcp Peroxiredoxin [Pos 73.3 7.6 0.00016 32.9 5.0 43 452-495 30-73 (157)
446 COG3017 LolB Outer membrane li 72.3 3.6 7.7E-05 36.0 2.9 24 1-24 3-26 (206)
447 COG4594 FecB ABC-type Fe3+-cit 71.9 3.3 7.2E-05 37.5 2.6 25 1-25 3-27 (310)
448 TIGR01617 arsC_related transcr 71.6 5.6 0.00012 31.9 3.8 35 457-499 2-36 (117)
449 PF12262 Lipase_bact_N: Bacter 71.5 3.1 6.7E-05 38.7 2.5 24 1-25 1-24 (268)
450 TIGR00762 DegV EDD domain prot 71.3 23 0.00051 33.3 8.5 152 154-320 10-165 (275)
451 COG4545 Glutaredoxin-related p 69.6 9 0.00019 27.5 3.8 53 115-177 5-73 (85)
452 cd03051 GST_N_GTT2_like GST_N 68.7 19 0.00042 25.4 5.9 52 115-173 2-57 (74)
453 PRK11627 hypothetical protein; 68.5 3.5 7.5E-05 36.3 2.0 33 187-219 158-190 (192)
454 COG3417 FlgN Collagen-binding 68.2 4.1 8.8E-05 35.2 2.3 22 1-22 1-22 (200)
455 cd00570 GST_N_family Glutathio 68.2 15 0.00032 25.3 5.2 51 116-173 3-55 (71)
456 PRK11657 dsbG disulfide isomer 68.1 6.4 0.00014 36.5 3.9 29 451-479 116-144 (251)
457 cd03036 ArsC_like Arsenate Red 68.0 7.4 0.00016 30.9 3.7 34 115-157 2-35 (111)
458 PRK01655 spxA transcriptional 67.9 8.2 0.00018 31.7 4.1 35 114-157 2-36 (131)
459 cd03074 PDI_b'_Calsequestrin_C 67.9 57 0.0012 25.5 10.1 100 98-198 6-119 (120)
460 cd03035 ArsC_Yffb Arsenate Red 67.2 5.2 0.00011 31.4 2.6 34 115-157 2-35 (105)
461 cd03037 GST_N_GRX2 GST_N famil 67.2 19 0.00042 25.4 5.5 67 116-195 3-69 (71)
462 KOG1651 Glutathione peroxidase 66.0 64 0.0014 27.5 8.8 124 95-229 19-154 (171)
463 PRK01655 spxA transcriptional 65.9 6.6 0.00014 32.3 3.1 36 456-499 2-37 (131)
464 PF06291 Lambda_Bor: Bor prote 65.0 4.4 9.4E-05 31.1 1.7 21 1-24 1-21 (97)
465 COG3065 Slp Starvation-inducib 64.9 4.3 9.3E-05 34.5 1.8 24 2-25 5-28 (191)
466 PRK10866 outer membrane biogen 64.9 4.7 0.0001 37.2 2.3 22 1-22 1-22 (243)
467 COG5633 Predicted periplasmic 64.6 4 8.7E-05 32.0 1.4 22 1-25 1-22 (123)
468 TIGR01617 arsC_related transcr 64.4 11 0.00023 30.3 4.0 34 115-157 2-35 (117)
469 PF00255 GSHPx: Glutathione pe 63.9 16 0.00034 28.8 4.7 45 108-155 19-63 (108)
470 PF13978 DUF4223: Protein of u 63.9 7.4 0.00016 25.4 2.3 24 1-24 1-24 (56)
471 PRK11530 hypothetical protein; 63.7 4.3 9.3E-05 34.3 1.5 22 1-22 1-22 (183)
472 PF09673 TrbC_Ftype: Type-F co 63.3 26 0.00057 27.9 6.0 45 127-176 36-80 (113)
473 TIGR02742 TrbC_Ftype type-F co 62.7 16 0.00036 29.8 4.7 44 155-198 59-114 (130)
474 PHA03075 glutaredoxin-like pro 62.2 15 0.00031 29.0 4.1 36 111-153 2-37 (123)
475 COG5645 Predicted periplasmic 61.8 4.8 0.00011 28.9 1.3 14 10-23 7-20 (80)
476 PRK06760 hypothetical protein; 61.7 4.9 0.00011 35.5 1.6 23 1-23 1-24 (223)
477 PRK02944 OxaA-like protein pre 61.6 5.9 0.00013 36.8 2.3 23 1-23 1-24 (255)
478 PF06053 DUF929: Domain of unk 59.6 25 0.00054 32.4 5.8 58 108-175 56-113 (249)
479 cd03031 GRX_GRX_like Glutaredo 59.6 15 0.00032 30.9 4.1 34 456-497 2-41 (147)
480 PRK10598 lipoprotein; Provisio 59.1 6.9 0.00015 34.1 2.1 22 1-23 1-22 (186)
481 PRK12559 transcriptional regul 59.0 10 0.00023 31.1 3.1 37 456-500 2-38 (131)
482 TIGR00752 slp outer membrane l 58.7 4.6 0.0001 35.1 1.0 20 1-23 2-21 (182)
483 PRK10523 lipoprotein involved 58.4 7 0.00015 35.4 2.1 23 1-23 2-24 (234)
484 COG2761 FrnE Predicted dithiol 57.7 20 0.00044 32.2 4.9 43 158-203 175-217 (225)
485 PRK13344 spxA transcriptional 57.7 18 0.0004 29.7 4.3 38 456-501 2-39 (132)
486 PHA03075 glutaredoxin-like pro 57.5 12 0.00026 29.5 2.9 29 453-481 2-30 (123)
487 PRK12559 transcriptional regul 57.2 16 0.00035 30.0 3.9 34 114-156 2-35 (131)
488 cd03032 ArsC_Spx Arsenate Redu 57.2 12 0.00026 29.9 3.1 36 456-499 2-37 (115)
489 PRK04405 prsA peptidylprolyl i 56.9 6.1 0.00013 37.7 1.6 16 8-23 12-27 (298)
490 cd03045 GST_N_Delta_Epsilon GS 56.5 44 0.00094 23.7 5.8 51 115-172 2-56 (74)
491 cd03059 GST_N_SspA GST_N famil 56.5 36 0.00078 24.0 5.4 69 115-197 2-71 (73)
492 PF06953 ArsD: Arsenical resis 56.4 88 0.0019 25.3 7.8 65 131-199 28-102 (123)
493 KOG0852 Alkyl hydroperoxide re 55.7 21 0.00046 30.5 4.3 47 108-154 31-78 (196)
494 PRK02998 prsA peptidylprolyl i 55.7 8.5 0.00018 36.5 2.3 23 1-23 1-25 (283)
495 cd03032 ArsC_Spx Arsenate Redu 55.6 19 0.00041 28.7 4.0 34 114-156 2-35 (115)
496 PRK12450 foldase protein PrsA; 55.4 7.1 0.00015 37.5 1.7 20 3-22 6-25 (309)
497 COG2980 RlpB Rare lipoprotein 54.8 9.4 0.0002 32.6 2.1 22 1-23 1-22 (178)
498 PF03032 Brevenin: Brevenin/es 54.6 8.8 0.00019 24.8 1.5 22 1-23 3-24 (46)
499 PF07689 KaiB: KaiB domain; I 54.2 6.5 0.00014 29.2 1.0 55 117-173 3-57 (82)
500 PRK10510 putative outer membra 53.7 9.3 0.0002 34.6 2.1 22 1-22 1-23 (219)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-68 Score=512.10 Aligned_cols=409 Identities=46% Similarity=0.794 Sum_probs=375.2
Q ss_pred CCCCcEEeChhcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccE
Q 010469 91 DDKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPT 170 (510)
Q Consensus 91 ~~~~v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~ 170 (510)
....|+.|+.++|+..+..+..++|.||||||+||++++|.++++|..++..+..+.++.|||+++.++|.+|+|++|||
T Consensus 23 ~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPT 102 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPT 102 (493)
T ss_pred cccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCe
Confidence 45679999999999999999999999999999999999999999999999987889999999999999999999999999
Q ss_pred EEEEeCCe-eeeecCCCCHHHHHHHHHHHcCCCcccccchhHHHHhccCCCeEEEEEecCCCCcchHHHHHhccccCcee
Q 010469 171 IYFFVDGQ-HKAYNGGRTKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLEDDVN 249 (510)
Q Consensus 171 ~~~~~~g~-~~~y~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (510)
+.+|++|. ...|.|+++.+.|..|+++..+|.+..+.+.++++.++.+.+..+|+||.+........+..++.+++++.
T Consensus 103 lkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~~~~~~~~a~~l~~d~~ 182 (493)
T KOG0190|consen 103 LKIFRNGRSAQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVVVIGFFKDLESLAESFFDAASKLRDDYK 182 (493)
T ss_pred EEEEecCCcceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCceEEEEEecccccchHHHHHHHHhccccce
Confidence 99999997 58999999999999999999999999999999999999999999999999888777555566779999999
Q ss_pred EEEcCChhHHHhhCCCCCCCCCeEEEeccCCCceeeccCCCCCHHHHHHHHHhcCCCceeecCCCchhhhccCCccceEE
Q 010469 250 FYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLL 329 (510)
Q Consensus 250 f~~~~~~~l~~~~~~~~~~~~p~l~~~~~~~~~~~~y~~g~~~~~~i~~fi~~~~~p~~~~lt~~~~~~~~~~~~~~~~v 329 (510)
|+++++.+++++++..... .+.+++++..+.....| .|.++.+.|.+||..+++|++.++|.++...++.+..+..+.
T Consensus 183 F~~ts~~~~~~~~~~~~~~-~~~i~l~kk~d~~~~~~-~~~~~~~~l~~Fi~~~~~plv~~ft~~~~~~~~~~~~~~~~~ 260 (493)
T KOG0190|consen 183 FAHTSDSDVAKKLELNTEG-TFPIVLFKKFDELLVKY-DGSFTPELLKKFIQENSLPLVTEFTVANNAKIYSSFVKLGLD 260 (493)
T ss_pred eeccCcHhHHhhccCCCCC-cceEEeccccccchhhc-ccccCHHHHHHHHHHhcccccceecccccceeecccccccee
Confidence 9999999999999987533 45588899988888888 999999999999999999999999999999998887777777
Q ss_pred EEEec--cchhhHHHHHHHHHHhccCceEEEEEEcCCcccccchhhhcCCCCCCCcEEEEeeCCCCCcccCCC-CCCHHH
Q 010469 330 LFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDG-ELTLDK 406 (510)
Q Consensus 330 ~~~~~--~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~~~~~~l~~~~gi~~~~~P~~~i~~~~~~~~y~~~~-~~t~e~ 406 (510)
+|... +..+.+++.++++|++|+++++|+++|... ++ ..++.||+.....|..++....+..+|.+.+ +.+.++
T Consensus 261 ~~~~~~~~~~e~~~~~~~~vAk~f~~~l~Fi~~d~e~--~~-~~~~~~Gl~~~~~~~~~v~~~~~~~Ky~~~~e~~~~~~ 337 (493)
T KOG0190|consen 261 FFVFFKCNRFEELRKKFEEVAKKFKGKLRFILIDPES--FA-RVLEFFGLEEEQLPIRAVILNEDGSKYPLEEEELDQEN 337 (493)
T ss_pred EEeccccccHHHHHHHHHHHHHhcccceEEEEEChHH--hh-HHHHhcCcccccCCeeEEeeccccccccCccccccHHH
Confidence 77755 488999999999999999999999997544 34 4789999997777766667677789999986 489999
Q ss_pred HHHHHHHhhcCcccccccCCCCCCCCC-CceEEEeCcchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCC
Q 010469 407 IKTFGEDFLEGKLKPFFKSDPIPETND-GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD 485 (510)
Q Consensus 407 i~~Fi~~~~~Gkl~~~~kSe~~p~~~~-~~~~~l~~~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~ 485 (510)
|+.|+.++++|+++|++||+|+|+.++ ++|+.++++||++.+++.+++|||.||||||+||+++.|.+++||+.+++..
T Consensus 338 ie~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~ 417 (493)
T KOG0190|consen 338 IESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDE 417 (493)
T ss_pred HHHHHHHHhcCccccccccCCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCC
Confidence 999999999999999999999999997 8899999999999999999999999999999999999999999999999988
Q ss_pred cEEEEEEeCCCCcCcccee
Q 010469 486 SIVIAKMDGTTNEHHRAKV 504 (510)
Q Consensus 486 ~~~~~~id~~~n~~~~~~~ 504 (510)
++++|++|++.|+++...+
T Consensus 418 ~vviAKmDaTaNd~~~~~~ 436 (493)
T KOG0190|consen 418 NVVIAKMDATANDVPSLKV 436 (493)
T ss_pred CcEEEEeccccccCccccc
Confidence 9999999999999999664
No 2
>PTZ00102 disulphide isomerase; Provisional
Probab=100.00 E-value=1.6e-55 Score=451.93 Aligned_cols=390 Identities=37% Similarity=0.646 Sum_probs=334.8
Q ss_pred CCcEEeChhcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEE
Q 010469 93 KDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIY 172 (510)
Q Consensus 93 ~~v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~ 172 (510)
..+..|+.++|+..+.++++++|+|||+||++|+++.|.|.++++.+++.+.++.++.|||+.++.+|++++|.++||++
T Consensus 32 ~~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~ 111 (477)
T PTZ00102 32 EHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIK 111 (477)
T ss_pred CCcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEE
Confidence 35889999999999998999999999999999999999999999998775567999999999999999999999999999
Q ss_pred EEeCCeeeeecCCCCHHHHHHHHHHHcCCCcccccchhHHHHhccCCCeEEEEEecCCCCcchHHHHHhc-cccCceeEE
Q 010469 173 FFVDGQHKAYNGGRTKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADAS-RLEDDVNFY 251 (510)
Q Consensus 173 ~~~~g~~~~y~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~f~ 251 (510)
+|++|....|.|.++.+.+.+|+.+.+++++..+.+.+++..+.......+++++...+......|.+++ .++....|+
T Consensus 112 ~~~~g~~~~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~F~ 191 (477)
T PTZ00102 112 FFNKGNPVNYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVADKHREHAKFF 191 (477)
T ss_pred EEECCceEEecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccCCcHHHHHHHHHHHhccccceEE
Confidence 9999966699999999999999999999999999999998887777777888888877777788888877 677778887
Q ss_pred EcCChhHHHhhCCCCCCCCCeEEEeccCCCceeeccCCCCCHHHHHHHHHhcCCCceeecCCCchhhhccCCccceEEEE
Q 010469 252 QTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLF 331 (510)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~p~l~~~~~~~~~~~~y~~g~~~~~~i~~fi~~~~~p~~~~lt~~~~~~~~~~~~~~~~v~~ 331 (510)
...+. ..+.+.+|+..+.....| .+ .+.++|..||..+++|++.+++.+++..++.++... ++++
T Consensus 192 ~~~~~------------~~~~~~~~~~~~~~~~~~-~~-~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~ 256 (477)
T PTZ00102 192 VKKHE------------GKNKIYVLHKDEEGVELF-MG-KTKEELEEFVSTESFPLFAEINAENYRRYISSGKDL-VWFC 256 (477)
T ss_pred EEcCC------------CCCcEEEEecCCCCcccC-CC-CCHHHHHHHHHHcCCCceeecCccchHHHhcCCccE-EEEe
Confidence 65432 246788888766554444 44 588999999999999999999999999998876532 2333
Q ss_pred EeccchhhHHHHHHHHHHhccCceEEEEEEcCCcccccchhhhcCCCCCCCcEEEEeeCCCCCcccCCC----CCCHHHH
Q 010469 332 AVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDG----ELTLDKI 407 (510)
Q Consensus 332 ~~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~~~~~~l~~~~gi~~~~~P~~~i~~~~~~~~y~~~~----~~t~e~i 407 (510)
...++.+.+.+.++++|++|++++.|+|+|+... ...+++.+|+.. .|.+++.+.. .+|.+.+ .++.++|
T Consensus 257 ~~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~--~~~~~~~~gi~~--~P~~~i~~~~--~~y~~~~~~~~~~~~~~l 330 (477)
T PTZ00102 257 GTTEDYDKYKSVVRKVARKLREKYAFVWLDTEQF--GSHAKEHLLIEE--FPGLAYQSPA--GRYLLPPAKESFDSVEAL 330 (477)
T ss_pred cCHHHHHHHHHHHHHHHHhccCceEEEEEechhc--chhHHHhcCccc--CceEEEEcCC--cccCCCccccccCCHHHH
Confidence 3445667789999999999999999999998652 223678999975 6888887643 3555544 3789999
Q ss_pred HHHHHHhhcCcccccccCCCCCCCCCCceEEEeCcchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcE
Q 010469 408 KTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSI 487 (510)
Q Consensus 408 ~~Fi~~~~~Gkl~~~~kSe~~p~~~~~~~~~l~~~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~ 487 (510)
.+|++++++|+++++++|+++|+...+.++.+++++|++.+.+++++|+|+|||+||++|+.+.|.+.++++.+++...+
T Consensus 331 ~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v 410 (477)
T PTZ00102 331 IEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSI 410 (477)
T ss_pred HHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcE
Confidence 99999999999999999999999888999999999999999888999999999999999999999999999998765679
Q ss_pred EEEEEeCCCCcCccce
Q 010469 488 VIAKMDGTTNEHHRAK 503 (510)
Q Consensus 488 ~~~~id~~~n~~~~~~ 503 (510)
.++++|++.|+.+...
T Consensus 411 ~~~~id~~~~~~~~~~ 426 (477)
T PTZ00102 411 IVAKMNGTANETPLEE 426 (477)
T ss_pred EEEEEECCCCccchhc
Confidence 9999999999987655
No 3
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=100.00 E-value=9.6e-55 Score=445.63 Aligned_cols=399 Identities=42% Similarity=0.733 Sum_probs=346.6
Q ss_pred CcEEeChhcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEE
Q 010469 94 DVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (510)
Q Consensus 94 ~v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~ 173 (510)
.|+.|+.++|+++++++++++|+|||+||++|+++.|.|.++++.+++.+.++.++.|||++++++|++++|.++||+++
T Consensus 2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKI 81 (462)
T ss_pred CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEE
Confidence 57889999999999999999999999999999999999999999998755679999999999999999999999999999
Q ss_pred EeCCe--eeeecCCCCHHHHHHHHHHHcCCCcccccchhHHHHhccCCCeEEEEEecCCCCcchHHHHHhc-cccCcee-
Q 010469 174 FVDGQ--HKAYNGGRTKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADAS-RLEDDVN- 249 (510)
Q Consensus 174 ~~~g~--~~~y~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~- 249 (510)
|++|. ...|.|.++.+.+.+|+.+.+++++..+++.++++.++..++..+|+++..........|.++| .+...+.
T Consensus 82 ~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~a~~~~~~~~~ 161 (462)
T TIGR01130 82 FRNGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDLDSELNDTFLSVAEKLRDVYFF 161 (462)
T ss_pred EeCCccceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHHHHHhhhccce
Confidence 99995 4899999999999999999999999999999999999999999999999876777888888887 4555555
Q ss_pred EEEcCChhHHHhhCCCCCCCCCeEEEeccCCCce--eeccCCCC--CHHHHHHHHHhcCCCceeecCCCchhhhccCCcc
Q 010469 250 FYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKI--SYFADGKF--DKSTIADFVFSNKLPLVTIFTRENAPSVFESPIK 325 (510)
Q Consensus 250 f~~~~~~~l~~~~~~~~~~~~p~l~~~~~~~~~~--~~y~~g~~--~~~~i~~fi~~~~~p~~~~lt~~~~~~~~~~~~~ 325 (510)
|+...+..+.+.++... +.+++|+..+... ..| .|+. +.++|..||..+++|++++++.+++..++..+ +
T Consensus 162 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~-~ 235 (462)
T TIGR01130 162 FAHSSDVAAFAKLGAFP----DSVVLFKPKDEDEKFSKV-DGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESG-P 235 (462)
T ss_pred EEecCCHHHHhhcCCCC----CcEEEecccccccccccc-cCcccCCHHHHHHHHHHcCCCceEeeCCcchhhHhCCC-C
Confidence 45556777888888763 7777777654333 356 6654 46899999999999999999999999998876 4
Q ss_pred ceEEEEEec-c--chhhHHHHHHHHHHhccC-ceEEEEEEcCCcccccchhhhcCCCCCCCcEEEEeeCCCCCcccCCC-
Q 010469 326 NQLLLFAVS-N--DSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDG- 400 (510)
Q Consensus 326 ~~~v~~~~~-~--~~~~~~~~~~~~A~~~~~-~~~f~~vd~~~~~~~~~l~~~~gi~~~~~P~~~i~~~~~~~~y~~~~- 400 (510)
..++++... . .++++.+.++++|++|++ .+.|+++|+.. ...+++.+|++....|.+++++..+..+|.+.+
T Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~---~~~~~~~~~~~~~~~P~~vi~~~~~~~~y~~~~~ 312 (462)
T TIGR01130 236 LVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEED---FGRELEYFGLKAEKFPAVAIQDLEGNKKYPMDQE 312 (462)
T ss_pred ceeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHH---hHHHHHHcCCCccCCceEEEEeCCcccccCCCcC
Confidence 433333322 2 247889999999999997 89999999765 446889999987779999999776556788876
Q ss_pred CCCHHHHHHHHHHhhcCcccccccCCCCCCCCCCceEEEeCcchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHH
Q 010469 401 ELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH 480 (510)
Q Consensus 401 ~~t~e~i~~Fi~~~~~Gkl~~~~kSe~~p~~~~~~~~~l~~~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~ 480 (510)
.++.++|.+|++++++|+++|+++||++|+...+.+..+++.+|.+.+.+++++++|+||++||++|+.+.|.++++++.
T Consensus 313 ~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~ 392 (462)
T TIGR01130 313 EFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEK 392 (462)
T ss_pred CCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999988889999999999999998899999999999999999999999999999
Q ss_pred hcCC-CcEEEEEEeCCCCcCcc
Q 010469 481 LRGV-DSIVIAKMDGTTNEHHR 501 (510)
Q Consensus 481 ~~~~-~~~~~~~id~~~n~~~~ 501 (510)
+++. .++.|+++|++.|+.+.
T Consensus 393 ~~~~~~~i~~~~id~~~n~~~~ 414 (462)
T TIGR01130 393 YKDAESDVVIAKMDATANDVPP 414 (462)
T ss_pred hhcCCCcEEEEEEECCCCccCC
Confidence 9873 37999999999998776
No 4
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=100.00 E-value=2.4e-36 Score=266.11 Aligned_cols=321 Identities=24% Similarity=0.401 Sum_probs=259.2
Q ss_pred eChhcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcC--CCeEEEEEeCcccHHHHHhCCCCcccEEEEEe
Q 010469 98 LKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSAN--ESVVLAKVDATEENELAHEYDVQGFPTIYFFV 175 (510)
Q Consensus 98 l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~--~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~ 175 (510)
++..|++.++....+++|+|||+||+.++.++|.|+++|+.++... .++..+.|||+.+..++.+|.|..|||+.+|+
T Consensus 1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 3567889999999999999999999999999999999999998763 36999999999999999999999999999999
Q ss_pred CCe--eeeecCCCCHHHHHHHHHHHcCCCcccccchhHHHHhccCCCeEEEEEecCCCCcchHHHHHhc-cccCceeEEE
Q 010469 176 DGQ--HKAYNGGRTKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQ 252 (510)
Q Consensus 176 ~g~--~~~y~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~f~~ 252 (510)
+|. ...|+|.++.+++.+||++.+..++.+..+.++++......+..+|+||.+.+++++..+..+| -+++++.|.+
T Consensus 81 nG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey~~~~kva~~lr~dc~f~V 160 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEYDNLRKVASLLRDDCVFLV 160 (375)
T ss_pred ccchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCCchHHHHHHHHHHHhhccEEEe
Confidence 993 3589999999999999999999999999999999999988889999999998999999998877 6899999987
Q ss_pred cCChhHHHhhCCCCCCCCCeEEEeccCCCce-eeccCCCCC-HHHHHHHHHhcCCCceeecCCCchhhhccCCccceEEE
Q 010469 253 TTNPDVAKIFHLDSKVNRPALVMVKKETEKI-SYFADGKFD-KSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLL 330 (510)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~p~l~~~~~~~~~~-~~y~~g~~~-~~~i~~fi~~~~~p~~~~lt~~~~~~~~~~~~~~~~v~ 330 (510)
........ ... ...+ ++++++..... ..| .|.++ .+.+..||.+.+.|+|+++|.+|..++.+.+.|. +++
T Consensus 161 ~~gD~~~~-~~~---~~~~-~~~f~pd~~~~~~~f-~G~~~nf~el~~Wi~dKcvpLVREiTFeN~EELtEEGlPf-lIL 233 (375)
T KOG0912|consen 161 GFGDLLKP-HEP---PGKN-ILVFDPDHSEPNHEF-LGSMTNFDELKQWIQDKCVPLVREITFENAEELTEEGLPF-LIL 233 (375)
T ss_pred eccccccC-CCC---CCCc-eEEeCCCcCCcCccc-ccccccHHHHHHHHHhcchhhhhhhhhccHHHHhhcCCce-EEE
Confidence 65432211 111 1122 56666544222 267 78776 8999999999999999999999999999998766 445
Q ss_pred EEeccchhhHHHHHHHHHHhccC---ceEEEEEEcCCcccccchhhhcCCCCCCCcEEEEeeCCCCCcccCC---CCCCH
Q 010469 331 FAVSNDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILD---GELTL 404 (510)
Q Consensus 331 ~~~~~~~~~~~~~~~~~A~~~~~---~~~f~~vd~~~~~~~~~l~~~~gi~~~~~P~~~i~~~~~~~~y~~~---~~~t~ 404 (510)
|.+..+......--..++++..+ -++|...|+.. ...-+..+|-++.++|+++|.+.. ..|.+. .-..+
T Consensus 234 f~~kdD~~s~k~F~~aI~ReL~~e~~~in~l~ADG~~---f~hpL~HlgKs~~DLPviaIDsF~--Hmylfp~f~di~~p 308 (375)
T KOG0912|consen 234 FRKKDDKESEKIFKNAIARELDDETLAINFLTADGKV---FKHPLRHLGKSPDDLPVIAIDSFR--HMYLFPDFNDINIP 308 (375)
T ss_pred EecCCcccHHHHHHHHHHHHhhhhhhccceeecCcce---ecchHHHhCCCcccCcEEEeeccc--eeeecCchhhhcCc
Confidence 66655544333333456666543 38899999765 334468999999999999998765 455543 34667
Q ss_pred HHHHHHHHHhhcCcccccccCCCCCC
Q 010469 405 DKIKTFGEDFLEGKLKPFFKSDPIPE 430 (510)
Q Consensus 405 e~i~~Fi~~~~~Gkl~~~~kSe~~p~ 430 (510)
+.|.+|+.|+.+|++.+.+...+-|.
T Consensus 309 GkLkqFv~DL~sgklHrefH~~~d~~ 334 (375)
T KOG0912|consen 309 GKLKQFVADLHSGKLHREFHEGPDPV 334 (375)
T ss_pred cHHHHHHHHHhCchhhHHhhcCCCCC
Confidence 89999999999999998887665553
No 5
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=100.00 E-value=1.1e-30 Score=235.67 Aligned_cols=322 Identities=20% Similarity=0.321 Sum_probs=239.1
Q ss_pred CCcEEeChhcHHHHHhCCCeEEEEEECCCChH--Hhh---hhH-HHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCC
Q 010469 93 KDVVVLKERNFSDVIENNKFVMVEFYAPWCGH--CQA---LAP-EYAAAATELKSANESVVLAKVDATEENELAHEYDVQ 166 (510)
Q Consensus 93 ~~v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~--C~~---~~p-~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~ 166 (510)
..|..||.+||.+++++.+..+|+|+.|--.. .++ +.. .|+-+|+-+.. .+|.|+.||..++..+++++|+.
T Consensus 34 DRVi~LneKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~--~gigfg~VD~~Kd~klAKKLgv~ 111 (383)
T PF01216_consen 34 DRVIDLNEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLED--KGIGFGMVDSKKDAKLAKKLGVE 111 (383)
T ss_dssp --CEEE-TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGG--CTEEEEEEETTTTHHHHHHHT--
T ss_pred cceEEcchhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccc--cCcceEEeccHHHHHHHHhcCcc
Confidence 46999999999999999999999999875322 211 112 34444555544 47999999999999999999999
Q ss_pred cccEEEEEeCCeeeeecCCCCHHHHHHHHHHHcCCCcccccchhHHHHhcc-CCCeEEEEEecCCCCcchHHHHHhc-cc
Q 010469 167 GFPTIYFFVDGQHKAYNGGRTKDAIVTWIKKKIGPGIYNITTLDEAERVLT-SETKVVLGYLNSLVGSESEVLADAS-RL 244 (510)
Q Consensus 167 ~~P~~~~~~~g~~~~y~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~-~~ 244 (510)
..+++++|++|..+.|.|.++++.|+.||...+..++..|++..+++.|-+ .+.+.+|+||.+..+..++.|..|| .+
T Consensus 112 E~~SiyVfkd~~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~~yk~FeeAAe~F 191 (383)
T PF01216_consen 112 EEGSIYVFKDGEVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSEDSEHYKEFEEAAEHF 191 (383)
T ss_dssp STTEEEEEETTEEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSHHHHHHHHHHHHC
T ss_pred ccCcEEEEECCcEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCCcHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998877 4478999999998888999999988 78
Q ss_pred cCceeEEEcCChhHHHhhCCCCCCCCCeEEEeccCCCceeeccCCCCCHHHHHHHHHhcCCCceeecCCCchhhhccCCc
Q 010469 245 EDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPI 324 (510)
Q Consensus 245 ~~~~~f~~~~~~~l~~~~~~~~~~~~p~l~~~~~~~~~~~~y~~g~~~~~~i~~fi~~~~~p~~~~lt~~~~~~~~~~~~ 324 (510)
...+.|+.+.++.++++++++. ..+-+|++-.+.+...+..+.+..+|.+||..|..|.+++++++++..+.....
T Consensus 192 ~p~IkFfAtfd~~vAk~L~lK~----nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rptlrkl~~~~m~e~Wedd~ 267 (383)
T PF01216_consen 192 QPYIKFFATFDKKVAKKLGLKL----NEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRPTLRKLRPEDMFETWEDDI 267 (383)
T ss_dssp TTTSEEEEE-SHHHHHHHT-ST----T-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-SEEE--GGGHHHHHHSSS
T ss_pred cCceeEEEEecchhhhhcCccc----cceeeeccccCCCccCCCCCCCHHHHHHHHHHhchhHhhhCChhhhhhhhcccC
Confidence 9999999999999999999974 889999999888888877778899999999999999999999999988777664
Q ss_pred c-ceEEEEEecc--chhhHHHHHHHHHHhccC--ceEEEEEEcCCcccccc-hhhhcCCCCCCCcEEEEeeCCC--CCcc
Q 010469 325 K-NQLLLFAVSN--DSEKLLPVFEEAAKSFKG--KLIFVYVQMDNEDVGKP-VSEYFGITGEAPKVLAYTGNDD--AKKH 396 (510)
Q Consensus 325 ~-~~~v~~~~~~--~~~~~~~~~~~~A~~~~~--~~~f~~vd~~~~~~~~~-l~~~~gi~~~~~P~~~i~~~~~--~~~y 396 (510)
. .+++.|+..+ +.-+++..++++|+.+.. .+.++|+|.++.+.... +.+.|||+-. .|.+.+++... +..+
T Consensus 268 ~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Idl~-~PqIGvVnvtdadsvW~ 346 (383)
T PF01216_consen 268 DGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGIDLS-RPQIGVVNVTDADSVWM 346 (383)
T ss_dssp SSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-TT-S-EEEEEETTTSEEEEC
T ss_pred CCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCcccc-CCceeEEeccccccchh
Confidence 4 6778888874 456789999999998775 59999999887653322 3578999866 58888887664 3444
Q ss_pred cCCC---CCCHHHHHHHHHHhhcCcccc
Q 010469 397 ILDG---ELTLDKIKTFGEDFLEGKLKP 421 (510)
Q Consensus 397 ~~~~---~~t~e~i~~Fi~~~~~Gkl~~ 421 (510)
.+.+ ..|.+.++.||+++++|++..
T Consensus 347 dm~d~~d~pt~~~LedWieDVlsg~i~~ 374 (383)
T PF01216_consen 347 DMDDDDDLPTAEELEDWIEDVLSGKINT 374 (383)
T ss_dssp -STTTSS---HHHHHHHHHHHHCTCCTB
T ss_pred ccCCcccCCcHHHHHHHHHHHhcCCCCC
Confidence 4543 468999999999999999865
No 6
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.98 E-value=2.6e-31 Score=233.67 Aligned_cols=297 Identities=22% Similarity=0.351 Sum_probs=227.2
Q ss_pred CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCCeeeeecCCCCH
Q 010469 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTK 188 (510)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~y~g~~~~ 188 (510)
+...|+|.||||||+||+++.|.|.++.-.+++.+..|.++++||+..+.++.+++|++|||+.+|++|..+.|+|+++.
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dYRG~R~K 121 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDYRGGREK 121 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeeecCCCccH
Confidence 45689999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcccccchhHHHHhccCCCeEEEEEecCCCCcchHHHHHhcccc-CceeEEEcCChhHHH-hhCCCC
Q 010469 189 DAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLE-DDVNFYQTTNPDVAK-IFHLDS 266 (510)
Q Consensus 189 ~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~~l~~-~~~~~~ 266 (510)
+.+.+|..+...+-+..|.+......-+.....+..+||...+.+....|..+|.-. ....|+..+ ++++- ....+
T Consensus 122 d~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtge~PL~d~fidAASe~~~~a~FfSas-eeVaPe~~~~k- 199 (468)
T KOG4277|consen 122 DAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFVFFGTGEGPLFDAFIDAASEKFSVARFFSAS-EEVAPEENDAK- 199 (468)
T ss_pred HHHHHHHHhcccceeeecChhHHHHHHHhhccCceEEEEeCCCCcHHHHHHHHhhhheeeeeeeccc-cccCCcccchh-
Confidence 999999999999888888774444455666666777888888899999999988543 334454433 33332 22233
Q ss_pred CCCCCeEEEeccCCCceeeccCCCCCHHHHHHHHHhcCCCceeecCCCchhhhccCCccceEEEEEec------cchhhH
Q 010469 267 KVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS------NDSEKL 340 (510)
Q Consensus 267 ~~~~p~l~~~~~~~~~~~~y~~g~~~~~~i~~fi~~~~~p~~~~lt~~~~~~~~~~~~~~~~v~~~~~------~~~~~~ 340 (510)
..|++.+|+.+. ...|.+ -+.+++.+||+..++|.+-..+.-++.++-.+++-.++.+.... ....++
T Consensus 200 --empaV~VFKDet--f~i~de--~dd~dLseWinRERf~~fLa~dgflL~EiG~sGKLVaLaVidEkhk~nns~eh~~~ 273 (468)
T KOG4277|consen 200 --EMPAVAVFKDET--FEIEDE--GDDEDLSEWINRERFPGFLAADGFLLAEIGASGKLVALAVIDEKHKFNNSSEHREF 273 (468)
T ss_pred --hccceEEEccce--eEEEec--CchhHHHHHHhHhhccchhhcccchHHHhCcCCceEEEEEeccccccCCcchhHHH
Confidence 369999998764 444313 35688999999999999988899999998877754433332221 235567
Q ss_pred HHHHHHHHHhccC------ceEEEEEEcCCcccccchhhhcCCCCCCCcEEEEeeCCCCCcccCCC---CCCHHHHHHHH
Q 010469 341 LPVFEEAAKSFKG------KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDG---ELTLDKIKTFG 411 (510)
Q Consensus 341 ~~~~~~~A~~~~~------~~~f~~vd~~~~~~~~~l~~~~gi~~~~~P~~~i~~~~~~~~y~~~~---~~t~e~i~~Fi 411 (510)
....+++|+.+++ ++.|+|+|+++ ++..+-+..-..|.+++++.....+|.-.. ..+.++|.+||
T Consensus 274 ~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD------~~nqilM~als~P~l~i~NtsnqeYfLse~d~qikniedilqFi 347 (468)
T KOG4277|consen 274 HKIAEEAAKDLRDHPDFHNDFQFAHLDGND------LANQILMAALSEPHLFIFNTSNQEYFLSEDDPQIKNIEDILQFI 347 (468)
T ss_pred HHHHHHHHHHHHhChhhhhhceeeccchhH------HHHHHHHHhhcCCeEEEEecCchheeeccCChhhhhHHHHHHHH
Confidence 7788888888774 48999999754 334444444456999999776544444222 46788899999
Q ss_pred HHhhcCcc
Q 010469 412 EDFLEGKL 419 (510)
Q Consensus 412 ~~~~~Gkl 419 (510)
++-..|-.
T Consensus 348 entsegI~ 355 (468)
T KOG4277|consen 348 ENTSEGID 355 (468)
T ss_pred hccccccc
Confidence 98555533
No 7
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.88 E-value=2.8e-22 Score=160.03 Aligned_cols=101 Identities=17% Similarity=0.307 Sum_probs=92.9
Q ss_pred CCCcEEeChhcHHHH---HhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHH-HhCCCCc
Q 010469 92 DKDVVVLKERNFSDV---IENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELA-HEYDVQG 167 (510)
Q Consensus 92 ~~~v~~l~~~~~~~~---~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~-~~~~v~~ 167 (510)
.+.|++|++.+|++. +.++++++|.|||+||++|+.+.|.|+++++.+++ .+.|+.|||++++++| ++|+|.+
T Consensus 8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~---~v~~~~Vd~d~~~~l~~~~~~I~~ 84 (113)
T cd03006 8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD---QVLFVAINCWWPQGKCRKQKHFFY 84 (113)
T ss_pred CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CeEEEEEECCCChHHHHHhcCCcc
Confidence 457999999999986 57889999999999999999999999999999976 6999999999999999 5899999
Q ss_pred ccEEEEEeCC-eeeeecCCCCHHHHHHHH
Q 010469 168 FPTIYFFVDG-QHKAYNGGRTKDAIVTWI 195 (510)
Q Consensus 168 ~P~~~~~~~g-~~~~y~g~~~~~~l~~~i 195 (510)
+||+++|++| ....|.|.++.+.|..|+
T Consensus 85 ~PTl~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 85 FPVIHLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred cCEEEEEECCccceEEeCCCCHHHHHhhC
Confidence 9999999998 568999999999999874
No 8
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.87 E-value=1.5e-21 Score=155.12 Aligned_cols=98 Identities=28% Similarity=0.695 Sum_probs=92.0
Q ss_pred CcEEeChhcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEE
Q 010469 94 DVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (510)
Q Consensus 94 ~v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~ 173 (510)
+++.|+.++|++.+.++++++|+||++||++|+++.|.|+++++++++ .+.|+.|||++++.+|++++|+++||+++
T Consensus 2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 78 (101)
T cd03003 2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG---VIRIGAVNCGDDRMLCRSQGVNSYPSLYV 78 (101)
T ss_pred CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC---ceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence 578899999999998889999999999999999999999999999976 69999999999999999999999999999
Q ss_pred EeCC-eeeeecCCCCHHHHHHH
Q 010469 174 FVDG-QHKAYNGGRTKDAIVTW 194 (510)
Q Consensus 174 ~~~g-~~~~y~g~~~~~~l~~~ 194 (510)
|++| ....|.|.++.+.|.+|
T Consensus 79 ~~~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 79 FPSGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred EcCCCCcccCCCCCCHHHHHhh
Confidence 9999 55789999999999887
No 9
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.85 E-value=1e-20 Score=152.27 Aligned_cols=102 Identities=32% Similarity=0.715 Sum_probs=92.9
Q ss_pred CcEEeChhcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcC---CCeEEEEEeCcccHHHHHhCCCCcccE
Q 010469 94 DVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSAN---ESVVLAKVDATEENELAHEYDVQGFPT 170 (510)
Q Consensus 94 ~v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~---~~v~~~~vd~~~~~~~~~~~~v~~~P~ 170 (510)
.|+++++++|++.+..+++++|.|||+||++|+++.|.|+++++.+++.. ..+.++.|||++++++|++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt 81 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPT 81 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCE
Confidence 57899999999999888999999999999999999999999999886531 258999999999999999999999999
Q ss_pred EEEEeCCe--eeeecCCCCHHHHHHHH
Q 010469 171 IYFFVDGQ--HKAYNGGRTKDAIVTWI 195 (510)
Q Consensus 171 ~~~~~~g~--~~~y~g~~~~~~l~~~i 195 (510)
+++|++|+ ...|.|.++.+.|.+||
T Consensus 82 l~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 82 LKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 99999995 37899999999999885
No 10
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=6.1e-20 Score=181.61 Aligned_cols=291 Identities=27% Similarity=0.463 Sum_probs=202.7
Q ss_pred hcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCC-ee
Q 010469 101 RNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG-QH 179 (510)
Q Consensus 101 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g-~~ 179 (510)
..+......+.+++|.||+|||++|+++.|.|.+++..+++ .+.++.|||+.+.++|.+|+|.++||+.+|.+| .+
T Consensus 38 ~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~---~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~ 114 (383)
T KOG0191|consen 38 SFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG---KVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKP 114 (383)
T ss_pred ccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcC---ceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCce
Confidence 33444567788999999999999999999999999999988 899999999999999999999999999999998 77
Q ss_pred eeecCCCCHHHHHHHHHHHcCCCcccccchhHHHHhccCCCeEEEEEecCCCCcchHHHHHhccccCceeEEEcCChhHH
Q 010469 180 KAYNGGRTKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLEDDVNFYQTTNPDVA 259 (510)
Q Consensus 180 ~~y~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~ 259 (510)
..|.|..+.+.+..|+...+.+.+......
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 144 (383)
T KOG0191|consen 115 IDYSGPRNAESLAEFLIKELEPSVKKLVEG-------------------------------------------------- 144 (383)
T ss_pred eeccCcccHHHHHHHHHHhhccccccccCC--------------------------------------------------
Confidence 899999999999999999887765443221
Q ss_pred HhhCCCCCCCCCeEEEeccCCCceeeccCCCCCHHHHHHHHHhcCCCceeecCCCchhhhccCCccceEEEEE-ec-cch
Q 010469 260 KIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFA-VS-NDS 337 (510)
Q Consensus 260 ~~~~~~~~~~~p~l~~~~~~~~~~~~y~~g~~~~~~i~~fi~~~~~p~~~~lt~~~~~~~~~~~~~~~~v~~~-~~-~~~ 337 (510)
-+.+++..++...........++.|. .. ..|
T Consensus 145 -----------------------------------------------~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~c 177 (383)
T KOG0191|consen 145 -----------------------------------------------EVFELTKDNFDETVKDSDADWLVEFYAPWCGHC 177 (383)
T ss_pred -----------------------------------------------ceEEccccchhhhhhccCcceEEEEeccccHHh
Confidence 00001111111111111112233333 32 568
Q ss_pred hhHHHHHHHHHHhcc--CceEEEEEEcCCcccccchhhhcCCCCCCCcEEEEeeCCCCCcccCCCCCCHHHHHHHHHHhh
Q 010469 338 EKLLPVFEEAAKSFK--GKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL 415 (510)
Q Consensus 338 ~~~~~~~~~~A~~~~--~~~~f~~vd~~~~~~~~~l~~~~gi~~~~~P~~~i~~~~~~~~y~~~~~~t~e~i~~Fi~~~~ 415 (510)
+...+.+.++|..+. ..+.++.+|+.. ...++..+++... |++.++..+..-.+.+.+..+.+.|.+|+.+..
T Consensus 178 k~l~~~~~~~a~~~~~~~~v~~~~~d~~~---~~~~~~~~~v~~~--Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~ 252 (383)
T KOG0191|consen 178 KKLAPEWEKLAKLLKSKENVELGKIDATV---HKSLASRLEVRGY--PTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKE 252 (383)
T ss_pred hhcChHHHHHHHHhccCcceEEEeeccch---HHHHhhhhcccCC--ceEEEecCCCcccccccccccHHHHHHHHHhhc
Confidence 888899999999886 457888888753 5567889998765 888888666442455567899999999999987
Q ss_pred cCcccc-cccCCCCCCCCCCceEEEeCcchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHH-hcCCCcEEEEEEe
Q 010469 416 EGKLKP-FFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH-LRGVDSIVIAKMD 493 (510)
Q Consensus 416 ~Gkl~~-~~kSe~~p~~~~~~~~~l~~~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~-~~~~~~~~~~~id 493 (510)
.-...+ ..++-.-+..-...+... ++|.. ........++.|+++||.+|....|.+...+.. ......+.+.++|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 329 (383)
T KOG0191|consen 253 RRNIPEPELKEIEDKDTFSPTFLDT--AEFLD-SLEKKKNKFVKFYAPWCGHCGGFAPVYEDKAELGYPDLSKIKAAKLD 329 (383)
T ss_pred CCCCCCcccccccCccccccchhhh--hhhhh-hhHHhhhhHhhhhcchhhcccccchhHHHHHhccccccccceeeccc
Confidence 764221 111111111000111111 22222 122345789999999999999999999999887 2233478888888
Q ss_pred CCCCcC
Q 010469 494 GTTNEH 499 (510)
Q Consensus 494 ~~~n~~ 499 (510)
+..-..
T Consensus 330 ~~~~~~ 335 (383)
T KOG0191|consen 330 CALLKS 335 (383)
T ss_pred cccccc
Confidence 865444
No 11
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=8.3e-21 Score=153.38 Aligned_cols=105 Identities=32% Similarity=0.594 Sum_probs=96.2
Q ss_pred CCcEEeChhcHHH-HHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEE
Q 010469 93 KDVVVLKERNFSD-VIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTI 171 (510)
Q Consensus 93 ~~v~~l~~~~~~~-~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~ 171 (510)
..+..++..+|++ +++++.||+|.|||+||+||+.+.|.+++++.++++ .+.++.||.+++.+++.+|+|+.+||+
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g---~~k~~kvdtD~~~ela~~Y~I~avPtv 119 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG---KFKLYKVDTDEHPELAEDYEISAVPTV 119 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC---eEEEEEEccccccchHhhcceeeeeEE
Confidence 3566778889997 557789999999999999999999999999999988 899999999999999999999999999
Q ss_pred EEEeCC-eeeeecCCCCHHHHHHHHHHHcC
Q 010469 172 YFFVDG-QHKAYNGGRTKDAIVTWIKKKIG 200 (510)
Q Consensus 172 ~~~~~g-~~~~y~g~~~~~~l~~~i~~~~~ 200 (510)
++|++| +..++.|..+.+.+.+||++.+.
T Consensus 120 lvfknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 120 LVFKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 999999 55699999999999999998764
No 12
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.85 E-value=2e-20 Score=150.12 Aligned_cols=104 Identities=17% Similarity=0.327 Sum_probs=93.0
Q ss_pred CCcEEeChhcHHHHHhC-CCeEEEEEECCCChH--Hh--hhhHHHHHHHHHH--hhcCCCeEEEEEeCcccHHHHHhCCC
Q 010469 93 KDVVVLKERNFSDVIEN-NKFVMVEFYAPWCGH--CQ--ALAPEYAAAATEL--KSANESVVLAKVDATEENELAHEYDV 165 (510)
Q Consensus 93 ~~v~~l~~~~~~~~~~~-~~~~~v~f~a~wC~~--C~--~~~p~~~~~~~~~--~~~~~~v~~~~vd~~~~~~~~~~~~v 165 (510)
..|..||++||++.+.+ ..++++.||++||+| |+ ...|.+.+++.++ .+ ++.|++||++++++++++|+|
T Consensus 9 ~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~---~v~~~kVD~d~~~~La~~~~I 85 (120)
T cd03065 9 DRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK---GIGFGLVDSKKDAKVAKKLGL 85 (120)
T ss_pred cceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC---CCEEEEEeCCCCHHHHHHcCC
Confidence 46888999999997755 468899999999987 99 8888899988887 44 699999999999999999999
Q ss_pred CcccEEEEEeCCeeeeecCCCCHHHHHHHHHHHc
Q 010469 166 QGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKKKI 199 (510)
Q Consensus 166 ~~~P~~~~~~~g~~~~y~g~~~~~~l~~~i~~~~ 199 (510)
+++||+++|++|+...|.|.++.+.+.+||.+.+
T Consensus 86 ~~iPTl~lfk~G~~v~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 86 DEEDSIYVFKDDEVIEYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred ccccEEEEEECCEEEEeeCCCCHHHHHHHHHHHh
Confidence 9999999999997767999999999999998764
No 13
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.84 E-value=7e-20 Score=163.22 Aligned_cols=179 Identities=31% Similarity=0.497 Sum_probs=152.7
Q ss_pred ecCCCCcchHHHHHhc-cccCceeEEEcCChhHHHhhCCCCCCCCCeEEEeccCCCceeeccCCC-CCHHHHHHHHHhcC
Q 010469 227 LNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGK-FDKSTIADFVFSNK 304 (510)
Q Consensus 227 ~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~l~~~~~~~~~~~~p~l~~~~~~~~~~~~y~~g~-~~~~~i~~fi~~~~ 304 (510)
|.+.++...+.|.++| .+.+++.|+.+.++++++.++++. |+|++|++.++++..| .|. ++.++|.+||..++
T Consensus 1 F~~~~~~~~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~----p~i~~~k~~~~~~~~y-~~~~~~~~~l~~fI~~~~ 75 (184)
T PF13848_consen 1 FPDKDSELFEIFEEAAEKLKGDYQFGVTFNEELAKKYGIKE----PTIVVYKKFDEKPVVY-DGDKFTPEELKKFIKKNS 75 (184)
T ss_dssp ESTTTSHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHCTCSS----SEEEEEECTTTSEEEE-SSSTTSHHHHHHHHHHHS
T ss_pred CCCcccHHHHHHHHHHHhCcCCcEEEEEcHHHHHHHhCCCC----CcEEEeccCCCCceec-ccccCCHHHHHHHHHHhc
Confidence 3455667788898887 678789999999999999999985 9999999988888999 887 89999999999999
Q ss_pred CCceeecCCCchhhhccCCccceEEEEEec--cchhhHHHHHHHHHHhccCceEEEEEEcCCcccccchhhhcCCCCCCC
Q 010469 305 LPLVTIFTRENAPSVFESPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAP 382 (510)
Q Consensus 305 ~p~~~~lt~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~~~~~~l~~~~gi~~~~~ 382 (510)
+|++.++|.+++..++..+.+.+++++... ...+.+.+.++++|+++++++.|+|+|+.. ..++++.+|+++.+.
T Consensus 76 ~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~---~~~~~~~~~i~~~~~ 152 (184)
T PF13848_consen 76 FPLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADD---FPRLLKYFGIDEDDL 152 (184)
T ss_dssp STSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTT---THHHHHHTTTTTSSS
T ss_pred cccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHH---hHHHHHHcCCCCccC
Confidence 999999999999999999877667777653 457788899999999999999999999874 456889999998899
Q ss_pred cEEEEeeCCCCCc-ccCCCCCCHHHHHHHHHH
Q 010469 383 KVLAYTGNDDAKK-HILDGELTLDKIKTFGED 413 (510)
Q Consensus 383 P~~~i~~~~~~~~-y~~~~~~t~e~i~~Fi~~ 413 (510)
|.+++++...+.+ |.+.++++.++|.+|+++
T Consensus 153 P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 153 PALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp SEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred CEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 9999998665544 445789999999999975
No 14
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.84 E-value=7.4e-20 Score=146.37 Aligned_cols=101 Identities=44% Similarity=0.816 Sum_probs=94.7
Q ss_pred cEEeChhcHHHHHhC-CCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEE
Q 010469 95 VVVLKERNFSDVIEN-NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (510)
Q Consensus 95 v~~l~~~~~~~~~~~-~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~ 173 (510)
|..+++++|++.+.+ +++++|.||++||++|+.+.|.|.++++.+.+ ++.++.|||++++.+|++++|.++|++++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~ 77 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD---NVKFAKVDCDENKELCKKYGVKSVPTIIF 77 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT---TSEEEEEETTTSHHHHHHTTCSSSSEEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc---ccccchhhhhccchhhhccCCCCCCEEEE
Confidence 568999999999976 89999999999999999999999999999987 79999999999999999999999999999
Q ss_pred EeCC-eeeeecCCCCHHHHHHHHHHH
Q 010469 174 FVDG-QHKAYNGGRTKDAIVTWIKKK 198 (510)
Q Consensus 174 ~~~g-~~~~y~g~~~~~~l~~~i~~~ 198 (510)
|++| ...+|.|..+.+.|.+||+++
T Consensus 78 ~~~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 78 FKNGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred EECCcEEEEEECCCCHHHHHHHHHcC
Confidence 9999 445999999999999999874
No 15
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.84 E-value=3.2e-20 Score=147.58 Aligned_cols=100 Identities=39% Similarity=0.720 Sum_probs=90.5
Q ss_pred CcEEeChhcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEE
Q 010469 94 DVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (510)
Q Consensus 94 ~v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~ 173 (510)
.|++|++++|++++.+ + ++|+|||+||++|+.+.|.|+++++.+++ .++.++.|||++++.++++++|.++||+++
T Consensus 2 ~v~~l~~~~f~~~~~~-~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~--~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 2 NVVELTDSNWTLVLEG-E-WMIEFYAPWCPACQQLQPEWEEFADWSDD--LGINVAKVDVTQEPGLSGRFFVTALPTIYH 77 (101)
T ss_pred ceEEcChhhHHHHhCC-C-EEEEEECCCCHHHHHHhHHHHHHHHhhcc--CCeEEEEEEccCCHhHHHHcCCcccCEEEE
Confidence 5788999999998753 3 78999999999999999999999988754 369999999999999999999999999999
Q ss_pred EeCCeeeeecCCCCHHHHHHHHHH
Q 010469 174 FVDGQHKAYNGGRTKDAIVTWIKK 197 (510)
Q Consensus 174 ~~~g~~~~y~g~~~~~~l~~~i~~ 197 (510)
|++|....|.|.++.+.|.+|+++
T Consensus 78 ~~~g~~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 78 AKDGVFRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred eCCCCEEEecCCCCHHHHHHHHhC
Confidence 999977889999999999999863
No 16
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.83 E-value=3.6e-20 Score=148.17 Aligned_cols=99 Identities=34% Similarity=0.721 Sum_probs=89.6
Q ss_pred CcEEeChhcHHHHH-hCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEE
Q 010469 94 DVVVLKERNFSDVI-ENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIY 172 (510)
Q Consensus 94 ~v~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~ 172 (510)
.+..++.++|++.+ ..+++++|.|||+||++|+.+.|.|+++++++.+ .+.++.|||++++++|++++|+++||++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~i~~~Pt~~ 78 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKG---KVKVGSVDCQKYESLCQQANIRAYPTIR 78 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CcEEEEEECCchHHHHHHcCCCcccEEE
Confidence 47789999999976 4567999999999999999999999999999866 6999999999999999999999999999
Q ss_pred EEeCC--eeeeecCCCC-HHHHHHHH
Q 010469 173 FFVDG--QHKAYNGGRT-KDAIVTWI 195 (510)
Q Consensus 173 ~~~~g--~~~~y~g~~~-~~~l~~~i 195 (510)
+|++| ...+|.|..+ .+.|.+||
T Consensus 79 ~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 79 LYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EEcCCCCCceEccCCCCCHHHHHhhC
Confidence 99876 5578999987 99998885
No 17
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.82 E-value=3.2e-19 Score=159.49 Aligned_cols=105 Identities=31% Similarity=0.702 Sum_probs=94.6
Q ss_pred CCcEEeChhcHHHHHhC-----CCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCc
Q 010469 93 KDVVVLKERNFSDVIEN-----NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQG 167 (510)
Q Consensus 93 ~~v~~l~~~~~~~~~~~-----~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~ 167 (510)
..+.++++++|++.+.. +++++|+|||+||++|+++.|.|+++++++++ .+.++.+||+++++++++|+|++
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~---~v~~~~VD~~~~~~l~~~~~I~~ 106 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG---QVNVADLDATRALNLAKRFAIKG 106 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC---CeEEEEecCcccHHHHHHcCCCc
Confidence 46899999999998743 47999999999999999999999999999976 69999999999999999999999
Q ss_pred ccEEEEEeCCeeeee-cCCCCHHHHHHHHHHHcC
Q 010469 168 FPTIYFFVDGQHKAY-NGGRTKDAIVTWIKKKIG 200 (510)
Q Consensus 168 ~P~~~~~~~g~~~~y-~g~~~~~~l~~~i~~~~~ 200 (510)
+||+++|++|+...| .|.++.+.+.+|+.+...
T Consensus 107 ~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 107 YPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred CCEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence 999999999976655 577999999999988763
No 18
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.81 E-value=2.3e-19 Score=143.19 Aligned_cols=100 Identities=41% Similarity=0.827 Sum_probs=90.5
Q ss_pred cEEeChhcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEE
Q 010469 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFF 174 (510)
Q Consensus 95 v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~ 174 (510)
+..+++++|+..+.++ +++|+|||+||++|+.+.|.|.++++++++....+.++.|||++++.+|++++|.++|++++|
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 80 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF 80 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEE
Confidence 6788999999998766 599999999999999999999999999976434699999999999999999999999999999
Q ss_pred eCC-eeeeecCCCCHHHHHHHH
Q 010469 175 VDG-QHKAYNGGRTKDAIVTWI 195 (510)
Q Consensus 175 ~~g-~~~~y~g~~~~~~l~~~i 195 (510)
++| ...+|.|..+.+.|.+||
T Consensus 81 ~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 81 KDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred eCCCeeeEeeCCCCHHHHHhhC
Confidence 988 456899999999998875
No 19
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.4e-19 Score=162.42 Aligned_cols=106 Identities=32% Similarity=0.650 Sum_probs=98.2
Q ss_pred CCcEEeChhcHHHHH-h--CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCccc
Q 010469 93 KDVVVLKERNFSDVI-E--NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFP 169 (510)
Q Consensus 93 ~~v~~l~~~~~~~~~-~--~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P 169 (510)
..+.++|+.||++.+ . ...||+|+||+|||+||+.+.|.+++++..+++ .+.+++|||++++.++..|||+++|
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G---~f~LakvN~D~~p~vAaqfgiqsIP 99 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG---KFKLAKVNCDAEPMVAAQFGVQSIP 99 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC---ceEEEEecCCcchhHHHHhCcCcCC
Confidence 349999999999865 2 346999999999999999999999999999998 8999999999999999999999999
Q ss_pred EEEEEeCCeee-eecCCCCHHHHHHHHHHHcCC
Q 010469 170 TIYFFVDGQHK-AYNGGRTKDAIVTWIKKKIGP 201 (510)
Q Consensus 170 ~~~~~~~g~~~-~y~g~~~~~~l~~~i~~~~~~ 201 (510)
++++|.+|+++ .|.|....+.+..|+.+.++.
T Consensus 100 tV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 100 TVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred eEEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 99999999775 899999999999999999977
No 20
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.80 E-value=7.5e-19 Score=141.56 Aligned_cols=99 Identities=23% Similarity=0.427 Sum_probs=87.4
Q ss_pred EeChhcHHH-HHh--CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEE
Q 010469 97 VLKERNFSD-VIE--NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (510)
Q Consensus 97 ~l~~~~~~~-~~~--~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~ 173 (510)
.++.++|++ ++. .+++++|+|||+||++|+.+.|.|.++++++++ .++.++.|||+.++.++++++|.++||+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~--~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i 85 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP--LGVGIATVNAGHERRLARKLGAHSVPAIVG 85 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh--cCceEEEEeccccHHHHHHcCCccCCEEEE
Confidence 356788875 443 679999999999999999999999999999976 258999999999999999999999999999
Q ss_pred EeCCee-eeecCCCCHHHHHHHHHH
Q 010469 174 FVDGQH-KAYNGGRTKDAIVTWIKK 197 (510)
Q Consensus 174 ~~~g~~-~~y~g~~~~~~l~~~i~~ 197 (510)
|++|+. ..+.|..+.+.|.+||++
T Consensus 86 ~~~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 86 IINGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred EECCEEEEEecCCCCHHHHHHHHhc
Confidence 999955 466899999999999975
No 21
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.80 E-value=4.5e-19 Score=139.58 Aligned_cols=84 Identities=27% Similarity=0.595 Sum_probs=77.6
Q ss_pred hCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCc-ccHHHHHhCCCCcccEEEEEeCCeeeeecCCC
Q 010469 108 ENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDAT-EENELAHEYDVQGFPTIYFFVDGQHKAYNGGR 186 (510)
Q Consensus 108 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~-~~~~~~~~~~v~~~P~~~~~~~g~~~~y~g~~ 186 (510)
.++++++|+|||+||++|+.++|.|+++++.+++ +.++.||++ +++.++++|+|.++||+++|++|...+|.|.+
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g~~~~~~G~~ 91 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEESSIKPSLLSRYGVVGFPTILLFNSTPRVRYNGTR 91 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEECCCCCHHHHHhcCCeecCEEEEEcCCceeEecCCC
Confidence 4689999999999999999999999999998854 788999998 78999999999999999999988667999999
Q ss_pred CHHHHHHHH
Q 010469 187 TKDAIVTWI 195 (510)
Q Consensus 187 ~~~~l~~~i 195 (510)
+.+.|.+|+
T Consensus 92 ~~~~l~~f~ 100 (100)
T cd02999 92 TLDSLAAFY 100 (100)
T ss_pred CHHHHHhhC
Confidence 999999885
No 22
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.79 E-value=7e-19 Score=142.15 Aligned_cols=98 Identities=48% Similarity=0.857 Sum_probs=89.1
Q ss_pred cEEeChhcHHHHHh-CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcc--cHHHHHhCCCCcccEE
Q 010469 95 VVVLKERNFSDVIE-NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE--ENELAHEYDVQGFPTI 171 (510)
Q Consensus 95 v~~l~~~~~~~~~~-~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~~P~~ 171 (510)
|.++++++|++.+. .+++++|.|||+||++|+++.|.|+++++.+.+ .+.++.+||+. ++.+|++++|+++|++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~---~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~ 78 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG---LVQVAAVDCDEDKNKPLCGKYGVQGFPTL 78 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC---CceEEEEecCccccHHHHHHcCCCcCCEE
Confidence 67899999999874 467899999999999999999999999999876 68999999998 8899999999999999
Q ss_pred EEEeCCe------eeeecCCCCHHHHHHHH
Q 010469 172 YFFVDGQ------HKAYNGGRTKDAIVTWI 195 (510)
Q Consensus 172 ~~~~~g~------~~~y~g~~~~~~l~~~i 195 (510)
++|++|. ...|.|.++.+.|.+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 79 KVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred EEEeCCCcccccccccccCccCHHHHHHHh
Confidence 9998774 46899999999999997
No 23
>PRK09381 trxA thioredoxin; Provisional
Probab=99.79 E-value=2.7e-18 Score=138.55 Aligned_cols=104 Identities=24% Similarity=0.614 Sum_probs=94.3
Q ss_pred CCcEEeChhcHHH-HHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEE
Q 010469 93 KDVVVLKERNFSD-VIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTI 171 (510)
Q Consensus 93 ~~v~~l~~~~~~~-~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~ 171 (510)
..|+.+++++|.+ +++.+++++|+||++||++|+.+.|.|+++++++.+ ++.++.+||+..+.++++++|.++|++
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 79 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTL 79 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC---CcEEEEEECCCChhHHHhCCCCcCCEE
Confidence 4688899999997 456688999999999999999999999999999876 699999999999999999999999999
Q ss_pred EEEeCCee-eeecCCCCHHHHHHHHHHHc
Q 010469 172 YFFVDGQH-KAYNGGRTKDAIVTWIKKKI 199 (510)
Q Consensus 172 ~~~~~g~~-~~y~g~~~~~~l~~~i~~~~ 199 (510)
++|++|+. .++.|..+.+.|..|+...+
T Consensus 80 ~~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 80 LLFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 99999954 58889999999999998765
No 24
>PHA02278 thioredoxin-like protein
Probab=99.79 E-value=1.6e-18 Score=136.12 Aligned_cols=92 Identities=18% Similarity=0.263 Sum_probs=80.6
Q ss_pred hhcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCccc----HHHHHhCCCCcccEEEEEe
Q 010469 100 ERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE----NELAHEYDVQGFPTIYFFV 175 (510)
Q Consensus 100 ~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~----~~~~~~~~v~~~P~~~~~~ 175 (510)
.++|++.+.++++++|.|||+||+||+.+.|.++++++++.. .+.++.||++.+ ++++++++|.++||+++|+
T Consensus 4 ~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~---~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk 80 (103)
T PHA02278 4 LVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDI---KKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYK 80 (103)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC---CceEEEEECCccccccHHHHHHCCCccccEEEEEE
Confidence 567888888899999999999999999999999999987544 467899998876 6899999999999999999
Q ss_pred CCe-eeeecCCCCHHHHHHH
Q 010469 176 DGQ-HKAYNGGRTKDAIVTW 194 (510)
Q Consensus 176 ~g~-~~~y~g~~~~~~l~~~ 194 (510)
+|+ ..+..|..+.+.+.+|
T Consensus 81 ~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 81 DGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred CCEEEEEEeCCCCHHHHHhh
Confidence 994 4588898888888765
No 25
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.78 E-value=2.1e-18 Score=137.74 Aligned_cols=97 Identities=40% Similarity=0.783 Sum_probs=86.5
Q ss_pred hcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCCeee
Q 010469 101 RNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQHK 180 (510)
Q Consensus 101 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~ 180 (510)
++|+++ .++++++|.|||+||++|+++.|.|+++++.+++.+..+.++.+||+..+.++++++|.++|++++|++|...
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~~ 85 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLAY 85 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCCce
Confidence 566764 4567999999999999999999999999999976444699999999999999999999999999999888667
Q ss_pred eecCCCCHHHHHHHHHHH
Q 010469 181 AYNGGRTKDAIVTWIKKK 198 (510)
Q Consensus 181 ~y~g~~~~~~l~~~i~~~ 198 (510)
.|.|..+.+.+.+|+++.
T Consensus 86 ~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 86 NYRGPRTKDDIVEFANRV 103 (104)
T ss_pred eecCCCCHHHHHHHHHhh
Confidence 899999999999999864
No 26
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.78 E-value=2.2e-18 Score=137.74 Aligned_cols=99 Identities=49% Similarity=0.859 Sum_probs=90.3
Q ss_pred CcEEeChhcHHHHHhC-CCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEE
Q 010469 94 DVVVLKERNFSDVIEN-NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIY 172 (510)
Q Consensus 94 ~v~~l~~~~~~~~~~~-~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~ 172 (510)
+|.++++++|++.+.+ +++++|.||++||++|+++.|.|.++++++.+ .+.++.+||+++++++++++|+++|+++
T Consensus 1 ~v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~---~~~~~~id~~~~~~~~~~~~i~~~P~~~ 77 (103)
T cd03001 1 DVVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG---IVKVGAVDADVHQSLAQQYGVRGFPTIK 77 (103)
T ss_pred CeEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC---CceEEEEECcchHHHHHHCCCCccCEEE
Confidence 3678999999998754 56699999999999999999999999999876 6999999999999999999999999999
Q ss_pred EEeCC--eeeeecCCCCHHHHHHHH
Q 010469 173 FFVDG--QHKAYNGGRTKDAIVTWI 195 (510)
Q Consensus 173 ~~~~g--~~~~y~g~~~~~~l~~~i 195 (510)
+|++| ....|.|..+.+.|.+|+
T Consensus 78 ~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 78 VFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred EECCCCcceeecCCCCCHHHHHHHh
Confidence 99988 567899999999999997
No 27
>PRK10996 thioredoxin 2; Provisional
Probab=99.78 E-value=3.8e-18 Score=143.05 Aligned_cols=105 Identities=29% Similarity=0.670 Sum_probs=95.6
Q ss_pred CCCcEEeChhcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEE
Q 010469 92 DKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTI 171 (510)
Q Consensus 92 ~~~v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~ 171 (510)
+..+++++..+|+++++++++++|+||++||++|+.+.|.|.++++++.+ ++.++.||++++++++++++|.++|++
T Consensus 34 ~~~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~---~v~~~~vd~~~~~~l~~~~~V~~~Ptl 110 (139)
T PRK10996 34 DGEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG---KVRFVKVNTEAERELSARFRIRSIPTI 110 (139)
T ss_pred CCCCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC---CeEEEEEeCCCCHHHHHhcCCCccCEE
Confidence 34577789999999998899999999999999999999999999998876 699999999999999999999999999
Q ss_pred EEEeCCee-eeecCCCCHHHHHHHHHHHc
Q 010469 172 YFFVDGQH-KAYNGGRTKDAIVTWIKKKI 199 (510)
Q Consensus 172 ~~~~~g~~-~~y~g~~~~~~l~~~i~~~~ 199 (510)
++|++|+. ..+.|..+.+.+.+|+.+.+
T Consensus 111 ii~~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 111 MIFKNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EEEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 99999954 57899999999999998753
No 28
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.78 E-value=2.4e-18 Score=137.77 Aligned_cols=100 Identities=45% Similarity=0.906 Sum_probs=91.1
Q ss_pred cEEeChhcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcc--cHHHHHhCCCCcccEEE
Q 010469 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE--ENELAHEYDVQGFPTIY 172 (510)
Q Consensus 95 v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~~P~~~ 172 (510)
|..++..+|+..++++++++|+||++||++|+++.|.+.++++.+.+. ..+.++.+||+. ++.++++++|+++|+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKED-GKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhC-CceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 678899999999988899999999999999999999999999998742 268999999998 89999999999999999
Q ss_pred EEeCCe-eeeecCCCCHHHHHHHH
Q 010469 173 FFVDGQ-HKAYNGGRTKDAIVTWI 195 (510)
Q Consensus 173 ~~~~g~-~~~y~g~~~~~~l~~~i 195 (510)
+|++|+ ...|.|..+.+.+.+|+
T Consensus 81 ~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 81 YFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEeCCCeeEEeCCCCCHHHHHhhC
Confidence 999994 67899999999998885
No 29
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.78 E-value=1.2e-18 Score=137.66 Aligned_cols=98 Identities=30% Similarity=0.503 Sum_probs=85.6
Q ss_pred CcEEeChhcHHHHHhCCCeEEEEEEC--CCCh---HHhhhhHHHHHHHHHHhhcCCCeEEEEEeC-----cccHHHHHhC
Q 010469 94 DVVVLKERNFSDVIENNKFVMVEFYA--PWCG---HCQALAPEYAAAATELKSANESVVLAKVDA-----TEENELAHEY 163 (510)
Q Consensus 94 ~v~~l~~~~~~~~~~~~~~~~v~f~a--~wC~---~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~-----~~~~~~~~~~ 163 (510)
.++.|+..||++++.+++.+||.||| |||+ +|++++|.+.+.+. .|.++.||| .++.+||++|
T Consensus 2 g~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~-------~v~lakVd~~d~~~~~~~~L~~~y 74 (116)
T cd03007 2 GCVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD-------DLLVAEVGIKDYGEKLNMELGERY 74 (116)
T ss_pred CeeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC-------ceEEEEEecccccchhhHHHHHHh
Confidence 47889999999999999999999999 8888 77777776665543 489999999 5678999999
Q ss_pred CCC--cccEEEEEeCC---eeeeecCC-CCHHHHHHHHHHH
Q 010469 164 DVQ--GFPTIYFFVDG---QHKAYNGG-RTKDAIVTWIKKK 198 (510)
Q Consensus 164 ~v~--~~P~~~~~~~g---~~~~y~g~-~~~~~l~~~i~~~ 198 (510)
+|+ +|||+++|++| .+..|.|. ++.+.|.+||.+.
T Consensus 75 ~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 75 KLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999 99999999988 35789997 9999999999875
No 30
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.78 E-value=1.3e-18 Score=137.11 Aligned_cols=88 Identities=23% Similarity=0.374 Sum_probs=76.0
Q ss_pred hhcHHHHHh--CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCC
Q 010469 100 ERNFSDVIE--NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG 177 (510)
Q Consensus 100 ~~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g 177 (510)
.++|++.+. .+++++|.|||+||+||+.+.|.|+++++++.+ .+.|+.||++++++++.+|+|.++||+++|++|
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~---~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G 78 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN---FAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRN 78 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC---ceEEEEEECCCCHHHHHHcCCCCCCEEEEEECC
Confidence 456777775 578999999999999999999999999999876 589999999999999999999999999999999
Q ss_pred ee-eeecCCCCHHH
Q 010469 178 QH-KAYNGGRTKDA 190 (510)
Q Consensus 178 ~~-~~y~g~~~~~~ 190 (510)
+. .+..|..+...
T Consensus 79 ~~v~~~~G~~~~~~ 92 (114)
T cd02954 79 KHMKIDLGTGNNNK 92 (114)
T ss_pred EEEEEEcCCCCCce
Confidence 44 46667655433
No 31
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.78 E-value=2.2e-18 Score=138.59 Aligned_cols=100 Identities=33% Similarity=0.639 Sum_probs=87.8
Q ss_pred CcEEeChhcHHHHHh---CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcc-cHHHHHh-CCCCcc
Q 010469 94 DVVVLKERNFSDVIE---NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-ENELAHE-YDVQGF 168 (510)
Q Consensus 94 ~v~~l~~~~~~~~~~---~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-~~~~~~~-~~v~~~ 168 (510)
.|++++.++|+.++. .+++++|.||++||++|+++.|.|.++++.+++ .++.++.|||+. ...+|.+ ++|.++
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~--~~~~~~~vd~d~~~~~~~~~~~~v~~~ 79 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG--SNVKVAKFNADGEQREFAKEELQLKSF 79 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc--CCeEEEEEECCccchhhHHhhcCCCcC
Confidence 478899999998873 578999999999999999999999999999985 359999999997 5788874 899999
Q ss_pred cEEEEEeCC--eeeeecCC-CCHHHHHHHH
Q 010469 169 PTIYFFVDG--QHKAYNGG-RTKDAIVTWI 195 (510)
Q Consensus 169 P~~~~~~~g--~~~~y~g~-~~~~~l~~~i 195 (510)
||+++|.+| ....|.|. ++.+.|.+||
T Consensus 80 Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 80 PTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 999999866 56789995 8999999885
No 32
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.77 E-value=3.7e-18 Score=134.35 Aligned_cols=91 Identities=31% Similarity=0.603 Sum_probs=82.1
Q ss_pred cHHHHH-hC-CCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCCee
Q 010469 102 NFSDVI-EN-NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQH 179 (510)
Q Consensus 102 ~~~~~~-~~-~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~ 179 (510)
+|++.+ .. +++++|+||++||++|+.+.|.|.++++.+.+ .+.++.|||+.++.++++|+|.++|++++|++|+.
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG---QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC---cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEE
Confidence 567666 33 67999999999999999999999999999876 68999999999999999999999999999999944
Q ss_pred -eeecCCCCHHHHHHHH
Q 010469 180 -KAYNGGRTKDAIVTWI 195 (510)
Q Consensus 180 -~~y~g~~~~~~l~~~i 195 (510)
..+.|..+.+.|..||
T Consensus 79 ~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 79 VDGFQGAQPEEQLRQML 95 (96)
T ss_pred eeeecCCCCHHHHHHHh
Confidence 5899999999999887
No 33
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.77 E-value=3.2e-18 Score=136.60 Aligned_cols=100 Identities=55% Similarity=0.986 Sum_probs=91.6
Q ss_pred eChhcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCC
Q 010469 98 LKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG 177 (510)
Q Consensus 98 l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g 177 (510)
|++++|++.+.++++++|+||++||++|+.+.|.|+++++.+++.+ ++.++.+||++++.++++|+|.++|++++|++|
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDP-DIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCC-ceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 5678999988889999999999999999999999999999987632 699999999999999999999999999999987
Q ss_pred e-eeeecCCCCHHHHHHHHHHH
Q 010469 178 Q-HKAYNGGRTKDAIVTWIKKK 198 (510)
Q Consensus 178 ~-~~~y~g~~~~~~l~~~i~~~ 198 (510)
. ...|.|..+.+.|..||.+.
T Consensus 80 ~~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 80 KKPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred CcceeecCCCCHHHHHHHHHhc
Confidence 4 78999999999999999875
No 34
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.76 E-value=7.1e-18 Score=133.79 Aligned_cols=96 Identities=20% Similarity=0.465 Sum_probs=83.8
Q ss_pred eChhcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCC
Q 010469 98 LKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG 177 (510)
Q Consensus 98 l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g 177 (510)
-+.++|+++++++++++|+|||+||++|+.+.|.+.++++.+++ ..+.|+.+|++ +++++++|+|+++||+++|++|
T Consensus 5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~--~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g 81 (102)
T cd02948 5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD--DLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNG 81 (102)
T ss_pred cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC--CcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECC
Confidence 36788999998899999999999999999999999999998874 24889999998 7889999999999999999999
Q ss_pred ee-eeecCCCCHHHHHHHHHH
Q 010469 178 QH-KAYNGGRTKDAIVTWIKK 197 (510)
Q Consensus 178 ~~-~~y~g~~~~~~l~~~i~~ 197 (510)
+. .+..| .+.+.+.++|.+
T Consensus 82 ~~~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 82 ELVAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred EEEEEEec-CChHHHHHHHhh
Confidence 55 45666 488888888864
No 35
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.76 E-value=7.5e-18 Score=133.83 Aligned_cols=94 Identities=18% Similarity=0.340 Sum_probs=78.9
Q ss_pred ChhcHHHHHhC--CCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccH---HHHHhCCCCcccEEEE
Q 010469 99 KERNFSDVIEN--NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN---ELAHEYDVQGFPTIYF 173 (510)
Q Consensus 99 ~~~~~~~~~~~--~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~---~~~~~~~v~~~P~~~~ 173 (510)
+.++|++.+.+ +++++|+|||+||++|+.+.|.|.++++++ . ++.|+.||++++. .++++++|.++||+++
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~---~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~ 77 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N---DVVFLLVNGDENDSTMELCRREKIIEVPHFLF 77 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C---CCEEEEEECCCChHHHHHHHHcCCCcCCEEEE
Confidence 35678887743 799999999999999999999999999988 3 5899999998874 7999999999999999
Q ss_pred EeCC-eeeeecCCCCHHHHHHHHHH
Q 010469 174 FVDG-QHKAYNGGRTKDAIVTWIKK 197 (510)
Q Consensus 174 ~~~g-~~~~y~g~~~~~~l~~~i~~ 197 (510)
|++| ...++.|. ..+.+.+.+.+
T Consensus 78 ~~~G~~v~~~~G~-~~~~l~~~~~~ 101 (103)
T cd02985 78 YKDGEKIHEEEGI-GPDELIGDVLY 101 (103)
T ss_pred EeCCeEEEEEeCC-CHHHHHHHHHh
Confidence 9999 45678884 55666665543
No 36
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.74 E-value=1.5e-17 Score=133.16 Aligned_cols=99 Identities=48% Similarity=0.930 Sum_probs=87.7
Q ss_pred cEEeChhcHHHHHhC-CCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEE
Q 010469 95 VVVLKERNFSDVIEN-NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (510)
Q Consensus 95 v~~l~~~~~~~~~~~-~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~ 173 (510)
|..|++++|++.+.+ +++++|+||++||++|+.+.|.|.++++.+++ ...+.++.+||+.+ +++..+++.++|++++
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKG-DDNVVIAKMDATAN-DVPSEFVVDGFPTILF 79 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcC-CCCEEEEEEeCcch-hhhhhccCCCCCEEEE
Confidence 678999999998754 58999999999999999999999999999866 23699999999886 6888899999999999
Q ss_pred EeCCe---eeeecCCCCHHHHHHHH
Q 010469 174 FVDGQ---HKAYNGGRTKDAIVTWI 195 (510)
Q Consensus 174 ~~~g~---~~~y~g~~~~~~l~~~i 195 (510)
|++|. ...|.|..+.+.+.+||
T Consensus 80 ~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 80 FPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EcCCCcCCceEccCCcCHHHHHhhC
Confidence 98774 56899999999999885
No 37
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.74 E-value=1.5e-17 Score=133.38 Aligned_cols=100 Identities=49% Similarity=0.955 Sum_probs=89.1
Q ss_pred cEEeChhcHHHHHhC-CCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcc-cHHHHHhCCCCcccEEE
Q 010469 95 VVVLKERNFSDVIEN-NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-ENELAHEYDVQGFPTIY 172 (510)
Q Consensus 95 v~~l~~~~~~~~~~~-~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-~~~~~~~~~v~~~P~~~ 172 (510)
|.++++++|++.+.+ +++++|+||++||++|+.+.|.|.++++.++. ..++.++.+||.. ++.+|++++|+++|+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~ 80 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFAN-EDDVVIAKVDADEANKDLAKKYGVSGFPTLK 80 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCC-CCCEEEEEEECCCcchhhHHhCCCCCcCEEE
Confidence 577889999998864 45999999999999999999999999999873 2369999999999 99999999999999999
Q ss_pred EEeCC--eeeeecCCCCHHHHHHHH
Q 010469 173 FFVDG--QHKAYNGGRTKDAIVTWI 195 (510)
Q Consensus 173 ~~~~g--~~~~y~g~~~~~~l~~~i 195 (510)
+|++| ....|.|.++.+.+.+||
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 81 FFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EEeCCCCCccccCCccCHHHHHhhC
Confidence 99866 557899999999999885
No 38
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.74 E-value=3.7e-17 Score=137.36 Aligned_cols=90 Identities=20% Similarity=0.453 Sum_probs=78.9
Q ss_pred CCcEEeChhcHHHHHh--CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCc---
Q 010469 93 KDVVVLKERNFSDVIE--NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQG--- 167 (510)
Q Consensus 93 ~~v~~l~~~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~--- 167 (510)
..+..++.++|++.+. .+++++|+|||+||++|+.+.|.|+++++++++ .++.|+.||++++++++++++|.+
T Consensus 28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~--~~v~f~~VDvd~~~~la~~~~V~~~~~ 105 (152)
T cd02962 28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN--NNLKFGKIDIGRFPNVAEKFRVSTSPL 105 (152)
T ss_pred CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc--CCeEEEEEECCCCHHHHHHcCceecCC
Confidence 3577889999998774 346999999999999999999999999999865 359999999999999999999988
Q ss_pred ---ccEEEEEeCCee-eeecC
Q 010469 168 ---FPTIYFFVDGQH-KAYNG 184 (510)
Q Consensus 168 ---~P~~~~~~~g~~-~~y~g 184 (510)
+||+++|++|+. .++.|
T Consensus 106 v~~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 106 SKQLPTIILFQGGKEVARRPY 126 (152)
T ss_pred cCCCCEEEEEECCEEEEEEec
Confidence 999999999944 46665
No 39
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.73 E-value=2.8e-17 Score=128.51 Aligned_cols=97 Identities=18% Similarity=0.182 Sum_probs=87.8
Q ss_pred CCcEEeChhcHHHHHhCCCeEEEEEECCC--ChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccE
Q 010469 93 KDVVVLKERNFSDVIENNKFVMVEFYAPW--CGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPT 170 (510)
Q Consensus 93 ~~v~~l~~~~~~~~~~~~~~~~v~f~a~w--C~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~ 170 (510)
.....++..||++.+..+.+++|.||++| |++|+.+.|.|+++++++.+ .+.|+.||+++++.++.+|+|+++||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~---~v~f~kVdid~~~~la~~f~V~sIPT 86 (111)
T cd02965 10 HGWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG---RFRAAVVGRADEQALAARFGVLRTPA 86 (111)
T ss_pred cCCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC---cEEEEEEECCCCHHHHHHcCCCcCCE
Confidence 45667889999999988899999999997 99999999999999999977 68999999999999999999999999
Q ss_pred EEEEeCCee-eeecCCCCHHHHH
Q 010469 171 IYFFVDGQH-KAYNGGRTKDAIV 192 (510)
Q Consensus 171 ~~~~~~g~~-~~y~g~~~~~~l~ 192 (510)
+++|++|+. ....|..+.+.+.
T Consensus 87 li~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 87 LLFFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred EEEEECCEEEEEEeCccCHHHHh
Confidence 999999954 5788988877764
No 40
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.71 E-value=4.4e-17 Score=129.58 Aligned_cols=98 Identities=51% Similarity=0.969 Sum_probs=88.6
Q ss_pred EeChhcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeC
Q 010469 97 VLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVD 176 (510)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~ 176 (510)
+++.++|.+.+.++++++|+||++||++|+.+.|.|.++++.++. +..+.++.+||++++.++++++|+++|++++|++
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKG-DGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhcc-CCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 578899999998888999999999999999999999999999851 1379999999999999999999999999999987
Q ss_pred C--eeeeecCCCCHHHHHHHH
Q 010469 177 G--QHKAYNGGRTKDAIVTWI 195 (510)
Q Consensus 177 g--~~~~y~g~~~~~~l~~~i 195 (510)
| ...+|.|..+.+.+.+|+
T Consensus 81 ~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCcccccCCCCcCHHHHHhhC
Confidence 7 667899999999998874
No 41
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.71 E-value=1.5e-16 Score=128.54 Aligned_cols=99 Identities=31% Similarity=0.630 Sum_probs=81.9
Q ss_pred CcEEeChhcHHHHHhC-CCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcc--cHHHHHhCCCCcccE
Q 010469 94 DVVVLKERNFSDVIEN-NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE--ENELAHEYDVQGFPT 170 (510)
Q Consensus 94 ~v~~l~~~~~~~~~~~-~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~~P~ 170 (510)
.++++++++|++.+.+ +++++|+||++||++|+.+.|.|+++++.+++....+.++.+||+. ++.+|++++|+++|+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 5788999999998754 4699999999999999999999999999987644459999999864 578999999999999
Q ss_pred EEEEeCCee-----eeecCC-CCHHHHH
Q 010469 171 IYFFVDGQH-----KAYNGG-RTKDAIV 192 (510)
Q Consensus 171 ~~~~~~g~~-----~~y~g~-~~~~~l~ 192 (510)
+++|++|.. ..|.|+ +..+.+.
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~ 109 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGPERDVNELR 109 (114)
T ss_pred EEEECCCCccCCCCCcccCCccCHHHHH
Confidence 999987732 356666 5555553
No 42
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.70 E-value=2e-16 Score=125.86 Aligned_cols=99 Identities=32% Similarity=0.686 Sum_probs=87.5
Q ss_pred eChhcHHHHHhC-CCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeC
Q 010469 98 LKERNFSDVIEN-NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVD 176 (510)
Q Consensus 98 l~~~~~~~~~~~-~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~ 176 (510)
++.++|.+.+.+ +++++|.||++||++|+.+.|.|.++++.+.+ ++.++.+|+++++.++++|+|.++|++++|++
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~ 77 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG---KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKN 77 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC---CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeC
Confidence 356778887755 56999999999999999999999999988865 69999999999999999999999999999998
Q ss_pred Ce-eeeecCCCCHHHHHHHHHHHc
Q 010469 177 GQ-HKAYNGGRTKDAIVTWIKKKI 199 (510)
Q Consensus 177 g~-~~~y~g~~~~~~l~~~i~~~~ 199 (510)
|+ ...+.|..+.+.+.+|+++.+
T Consensus 78 g~~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 78 GKEVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred CcEeeeecCCCCHHHHHHHHHhhC
Confidence 84 467889999999999998753
No 43
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.70 E-value=1.8e-16 Score=128.31 Aligned_cols=88 Identities=20% Similarity=0.385 Sum_probs=77.7
Q ss_pred CCcEEeChhcHHHHHhCC---CeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCccc
Q 010469 93 KDVVVLKERNFSDVIENN---KFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFP 169 (510)
Q Consensus 93 ~~v~~l~~~~~~~~~~~~---~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P 169 (510)
+.+.+++.++|.+.+.+. ++++|+||++||++|+.+.|.|+++++++.+ +.|+.||++++ .++++++|.++|
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~----v~f~~vd~~~~-~l~~~~~i~~~P 78 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE----TKFVKINAEKA-FLVNYLDIKVLP 78 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC----cEEEEEEchhh-HHHHhcCCCcCC
Confidence 457889999999887554 8999999999999999999999999998754 89999999988 999999999999
Q ss_pred EEEEEeCCee-eeecCC
Q 010469 170 TIYFFVDGQH-KAYNGG 185 (510)
Q Consensus 170 ~~~~~~~g~~-~~y~g~ 185 (510)
|+++|++|+. .++.|.
T Consensus 79 t~~~f~~G~~v~~~~G~ 95 (113)
T cd02957 79 TLLVYKNGELIDNIVGF 95 (113)
T ss_pred EEEEEECCEEEEEEecH
Confidence 9999999944 466663
No 44
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.70 E-value=1.7e-15 Score=137.36 Aligned_cols=182 Identities=18% Similarity=0.238 Sum_probs=131.7
Q ss_pred CCeEEEEEEC---CCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCCee--eeecC
Q 010469 110 NKFVMVEFYA---PWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQH--KAYNG 184 (510)
Q Consensus 110 ~~~~~v~f~a---~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~--~~y~g 184 (510)
+...++.|++ +||++|+.+.|.++++++++.+ ..+.++.+|.+++++++++|+|.++||+++|++|.. .++.|
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~--~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G 96 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK--LKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTG 96 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC--ceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEee
Confidence 4455777888 9999999999999999998843 246678888889999999999999999999999944 47999
Q ss_pred CCCHHHHHHHHHHHcCC--CcccccchhHHHHhccC-CCeEEEEEecCCCCcchHH---HHHhccccCceeEEEc---CC
Q 010469 185 GRTKDAIVTWIKKKIGP--GIYNITTLDEAERVLTS-ETKVVLGYLNSLVGSESEV---LADASRLEDDVNFYQT---TN 255 (510)
Q Consensus 185 ~~~~~~l~~~i~~~~~~--~~~~i~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~f~~~---~~ 255 (510)
..+.+.+.+||...+.- ....+ +.+..+.+... .++.++.|...++...... +..++.....+.+..+ ..
T Consensus 97 ~~~~~~l~~~i~~~~~~~~~~~~L-~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~ 175 (215)
T TIGR02187 97 IPAGYEFAALIEDIVRVSQGEPGL-SEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANEN 175 (215)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCC
Confidence 99999999999887532 22233 22333333333 3445555777877664433 3334433456666543 45
Q ss_pred hhHHHhhCCCCCCCCCeEEEeccCCCceeeccCCCCCHHHHHHHHHh
Q 010469 256 PDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFS 302 (510)
Q Consensus 256 ~~l~~~~~~~~~~~~p~l~~~~~~~~~~~~y~~g~~~~~~i~~fi~~ 302 (510)
++++.++++.. .|++++++... .+ .|....+++.+||..
T Consensus 176 ~~~~~~~~V~~---vPtl~i~~~~~----~~-~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 176 PDLAEKYGVMS---VPKIVINKGVE----EF-VGAYPEEQFLEYILS 214 (215)
T ss_pred HHHHHHhCCcc---CCEEEEecCCE----EE-ECCCCHHHHHHHHHh
Confidence 68999999986 79999886432 15 677788899999864
No 45
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.69 E-value=2.9e-16 Score=126.40 Aligned_cols=88 Identities=18% Similarity=0.372 Sum_probs=78.0
Q ss_pred CCcEEeCh-hcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEE
Q 010469 93 KDVVVLKE-RNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTI 171 (510)
Q Consensus 93 ~~v~~l~~-~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~ 171 (510)
+.+..++. ++|.+.+.++++++|+||++||++|+.+.|.|+++++++.+ +.|+.||+++.++++++|+|.++||+
T Consensus 4 g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~----i~f~~Vd~~~~~~l~~~~~v~~vPt~ 79 (113)
T cd02989 4 GKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE----TKFIKVNAEKAPFLVEKLNIKVLPTV 79 (113)
T ss_pred CCeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC----CEEEEEEcccCHHHHHHCCCccCCEE
Confidence 34667777 89999998889999999999999999999999999998754 89999999999999999999999999
Q ss_pred EEEeCCee-eeecC
Q 010469 172 YFFVDGQH-KAYNG 184 (510)
Q Consensus 172 ~~~~~g~~-~~y~g 184 (510)
++|++|+. .++.|
T Consensus 80 l~fk~G~~v~~~~g 93 (113)
T cd02989 80 ILFKNGKTVDRIVG 93 (113)
T ss_pred EEEECCEEEEEEEC
Confidence 99999943 35544
No 46
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.69 E-value=4.2e-16 Score=130.91 Aligned_cols=98 Identities=23% Similarity=0.423 Sum_probs=83.7
Q ss_pred hhcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcc--cHHHHHhCCCCcccEEEEEe-C
Q 010469 100 ERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE--ENELAHEYDVQGFPTIYFFV-D 176 (510)
Q Consensus 100 ~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~~P~~~~~~-~ 176 (510)
...+++.+..+++++|+|||+||++|+.+.|.|.++++.+.+ .+.|+.||++. ...++++|+|.++|++++|+ +
T Consensus 10 ~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~---~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~ 86 (142)
T cd02950 10 STPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD---QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDRE 86 (142)
T ss_pred cCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc---CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCC
Confidence 456778888899999999999999999999999999999876 46666666554 46889999999999999995 7
Q ss_pred C-eeeeecCCCCHHHHHHHHHHHcC
Q 010469 177 G-QHKAYNGGRTKDAIVTWIKKKIG 200 (510)
Q Consensus 177 g-~~~~y~g~~~~~~l~~~i~~~~~ 200 (510)
| ...++.|....+.+..+|.+.+.
T Consensus 87 G~~v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 87 GNEEGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHc
Confidence 8 44588899999999999998874
No 47
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.68 E-value=2.1e-16 Score=126.23 Aligned_cols=92 Identities=26% Similarity=0.406 Sum_probs=81.2
Q ss_pred hcHHHHHhCCCeEEEEEECCCChHHhhhhHHH---HHHHHHHhhcCCCeEEEEEeCcc----cHHHHHhCCCCcccEEEE
Q 010469 101 RNFSDVIENNKFVMVEFYAPWCGHCQALAPEY---AAAATELKSANESVVLAKVDATE----ENELAHEYDVQGFPTIYF 173 (510)
Q Consensus 101 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~v~~~~vd~~~----~~~~~~~~~v~~~P~~~~ 173 (510)
+.|.+.+.++++++|.||++||++|+.+.|.+ .++++.+.+ ++.++.||+++ .+.++++++|.++|++++
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK---DVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC---CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 46778888999999999999999999999988 678888765 69999999987 578999999999999999
Q ss_pred Ee--CC-eeeeecCCCCHHHHHHHH
Q 010469 174 FV--DG-QHKAYNGGRTKDAIVTWI 195 (510)
Q Consensus 174 ~~--~g-~~~~y~g~~~~~~l~~~i 195 (510)
|+ +| ...++.|..+.+.+.++|
T Consensus 79 ~~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 79 YGPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred ECCCCCCCCcccccccCHHHHHHHh
Confidence 98 57 457899999999998886
No 48
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.8e-16 Score=123.17 Aligned_cols=84 Identities=37% Similarity=0.739 Sum_probs=73.3
Q ss_pred CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCC-eeeeecCCCC
Q 010469 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG-QHKAYNGGRT 187 (510)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g-~~~~y~g~~~ 187 (510)
++++++|.|||+||+||+.+.|.+.+++.+|.+ +.|+.||+++..+++++++|...||+++|++| ...++.|...
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~ 95 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANK 95 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCH
Confidence 469999999999999999999999999999866 99999999999999999999999999999999 5567777644
Q ss_pred HHHHHHHHHH
Q 010469 188 KDAIVTWIKK 197 (510)
Q Consensus 188 ~~~l~~~i~~ 197 (510)
. .+.+.+.+
T Consensus 96 ~-~l~~~i~~ 104 (106)
T KOG0907|consen 96 A-ELEKKIAK 104 (106)
T ss_pred H-HHHHHHHh
Confidence 3 66655543
No 49
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.68 E-value=5e-16 Score=122.46 Aligned_cols=92 Identities=23% Similarity=0.577 Sum_probs=78.7
Q ss_pred hhcHHHHHhCC--CeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCC
Q 010469 100 ERNFSDVIENN--KFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG 177 (510)
Q Consensus 100 ~~~~~~~~~~~--~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g 177 (510)
.++|++.+... ++++|+||++||++|+.+.|.|+++++++.. .+.++.+|+++.++++++|+|.++||+++|++|
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~---~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 78 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP---SVLFLSIEAEELPEISEKFEITAVPTFVFFRNG 78 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC---ceEEEEEccccCHHHHHhcCCccccEEEEEECC
Confidence 46788877655 9999999999999999999999999998733 799999999999999999999999999999999
Q ss_pred eee-eecCCCCHHHHHHHH
Q 010469 178 QHK-AYNGGRTKDAIVTWI 195 (510)
Q Consensus 178 ~~~-~y~g~~~~~~l~~~i 195 (510)
+.. ++.| ...+.|.+.|
T Consensus 79 ~~~~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 79 TIVDRVSG-ADPKELAKKV 96 (97)
T ss_pred EEEEEEeC-CCHHHHHHhh
Confidence 654 5556 4567776654
No 50
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.67 E-value=6.9e-16 Score=126.62 Aligned_cols=98 Identities=20% Similarity=0.339 Sum_probs=81.5
Q ss_pred ChhcHHHHH--hCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEE-EEe
Q 010469 99 KERNFSDVI--ENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIY-FFV 175 (510)
Q Consensus 99 ~~~~~~~~~--~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~-~~~ 175 (510)
+..+|++.+ .++++++|.|||+||+||+.+.|.|+++++++++ .+.|+.||++++++++..|+|++.|+++ +|+
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~---~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk 86 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN---FAVIYLVDITEVPDFNTMYELYDPCTVMFFFR 86 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC---ceEEEEEECCCCHHHHHHcCccCCCcEEEEEE
Confidence 467788877 3578999999999999999999999999999876 6888999999999999999999887776 889
Q ss_pred CCe-e-eeecC--------CCCHHHHHHHHHHHc
Q 010469 176 DGQ-H-KAYNG--------GRTKDAIVTWIKKKI 199 (510)
Q Consensus 176 ~g~-~-~~y~g--------~~~~~~l~~~i~~~~ 199 (510)
+|. . .+..| ..+.+.+.+-++..+
T Consensus 87 ~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~ 120 (142)
T PLN00410 87 NKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
T ss_pred CCeEEEEEecccccccccccCCHHHHHHHHHHHH
Confidence 994 3 45667 456677776666554
No 51
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.67 E-value=4.5e-16 Score=153.11 Aligned_cols=107 Identities=30% Similarity=0.590 Sum_probs=92.7
Q ss_pred cCCCCcEEeChhcHHHHHh---CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccH-HHH-HhCC
Q 010469 90 IDDKDVVVLKERNFSDVIE---NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN-ELA-HEYD 164 (510)
Q Consensus 90 ~~~~~v~~l~~~~~~~~~~---~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~-~~~~ 164 (510)
+++..|+.|+..||++.+. .++++||.|||+||++|+.+.|.|+++++++++ .++.|+.|||+.+. .++ ++|+
T Consensus 348 ~~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~--~~v~~~kVdvD~~~~~~~~~~~~ 425 (463)
T TIGR00424 348 FDSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAG--SGVKVAKFRADGDQKEFAKQELQ 425 (463)
T ss_pred cCCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc--CCcEEEEEECCCCccHHHHHHcC
Confidence 3566899999999999875 678999999999999999999999999999976 24899999998764 454 7899
Q ss_pred CCcccEEEEEeCC--eeeeec-CCCCHHHHHHHHHHH
Q 010469 165 VQGFPTIYFFVDG--QHKAYN-GGRTKDAIVTWIKKK 198 (510)
Q Consensus 165 v~~~P~~~~~~~g--~~~~y~-g~~~~~~l~~~i~~~ 198 (510)
|.++||+++|++| ....|. |.++.+.|..||+..
T Consensus 426 I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 426 LGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred CCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 9999999999988 457897 589999999999753
No 52
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.2e-16 Score=155.73 Aligned_cols=133 Identities=42% Similarity=0.713 Sum_probs=110.9
Q ss_pred CcccccccCCCCCCCCCCCCCCCCccCCCCcEEeChhcHHHHH-hCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcC
Q 010469 65 DDDFSDDFDDENYHDFDDSEYKEPEIDDKDVVVLKERNFSDVI-ENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSAN 143 (510)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~ 143 (510)
...|..++.+|...+..++..-....+.+.|..+-++||++++ +.+|-|||.||||||+||+++.|.|++|++.+++ .
T Consensus 338 ie~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~-~ 416 (493)
T KOG0190|consen 338 IESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKD-D 416 (493)
T ss_pred HHHHHHHHhcCccccccccCCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcC-C
Confidence 3456677888888776665544444444789999999999976 6789999999999999999999999999999998 5
Q ss_pred CCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCC---eeeeecCCCCHHHHHHHHHHHcC
Q 010469 144 ESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG---QHKAYNGGRTKDAIVTWIKKKIG 200 (510)
Q Consensus 144 ~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g---~~~~y~g~~~~~~l~~~i~~~~~ 200 (510)
.++.++.+|.+.+.- ....+.++||+++|+.| .+..|.|.++.+.+..|+.+.-.
T Consensus 417 ~~vviAKmDaTaNd~--~~~~~~~fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 417 ENVVIAKMDATANDV--PSLKVDGFPTILFFPAGHKSNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred CCcEEEEeccccccC--ccccccccceEEEecCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence 589999999988763 34567789999999866 57899999999999999987765
No 53
>PLN02309 5'-adenylylsulfate reductase
Probab=99.67 E-value=7.5e-16 Score=151.60 Aligned_cols=107 Identities=28% Similarity=0.594 Sum_probs=94.8
Q ss_pred cCCCCcEEeChhcHHHHH---hCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCc-ccHHHHH-hCC
Q 010469 90 IDDKDVVVLKERNFSDVI---ENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDAT-EENELAH-EYD 164 (510)
Q Consensus 90 ~~~~~v~~l~~~~~~~~~---~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~-~~~~~~~-~~~ 164 (510)
.+...|+.|+.++|++++ +.++++||+||||||++|+.+.|.|+++++++.+ .++.|+.|||+ .+..+|. +++
T Consensus 342 ~~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~--~~V~f~kVD~d~~~~~la~~~~~ 419 (457)
T PLN02309 342 FNSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAG--SGVKVAKFRADGDQKEFAKQELQ 419 (457)
T ss_pred cCCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc--CCeEEEEEECCCcchHHHHhhCC
Confidence 355689999999999987 4678999999999999999999999999999976 35999999999 7788886 699
Q ss_pred CCcccEEEEEeCC--eeeeecC-CCCHHHHHHHHHHH
Q 010469 165 VQGFPTIYFFVDG--QHKAYNG-GRTKDAIVTWIKKK 198 (510)
Q Consensus 165 v~~~P~~~~~~~g--~~~~y~g-~~~~~~l~~~i~~~ 198 (510)
|.++||+++|++| ....|.| .++.+.|..||+..
T Consensus 420 I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 420 LGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred CceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 9999999999877 5678985 69999999999864
No 54
>PTZ00051 thioredoxin; Provisional
Probab=99.65 E-value=1.3e-15 Score=120.30 Aligned_cols=89 Identities=31% Similarity=0.686 Sum_probs=77.3
Q ss_pred ChhcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCCe
Q 010469 99 KERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQ 178 (510)
Q Consensus 99 ~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 178 (510)
+.+++++++..+++++|+||++||++|+.+.|.|.++++++. ++.++.+|+++++.++++|+|.++|++++|++|+
T Consensus 7 ~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~----~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 82 (98)
T PTZ00051 7 SQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT----KMVFVKVDVDELSEVAEKENITSMPTFKVFKNGS 82 (98)
T ss_pred CHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC----CcEEEEEECcchHHHHHHCCCceeeEEEEEeCCe
Confidence 356788888889999999999999999999999999998764 4899999999999999999999999999999994
Q ss_pred e-eeecCCCCHHHHH
Q 010469 179 H-KAYNGGRTKDAIV 192 (510)
Q Consensus 179 ~-~~y~g~~~~~~l~ 192 (510)
. ..+.|. ..+.|.
T Consensus 83 ~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 83 VVDTLLGA-NDEALK 96 (98)
T ss_pred EEEEEeCC-CHHHhh
Confidence 4 577785 545554
No 55
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.65 E-value=1.2e-15 Score=119.02 Aligned_cols=77 Identities=19% Similarity=0.346 Sum_probs=68.9
Q ss_pred hcHHHHHh--CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCCe
Q 010469 101 RNFSDVIE--NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQ 178 (510)
Q Consensus 101 ~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 178 (510)
+.+++.+. ++++++|.|||+||+||+.+.|.|+++++++++ .+.|+.||.++.+++++.|+|+..||+++|++|+
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~---~~~f~kVDVDev~dva~~y~I~amPtfvffkngk 79 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK---MASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQ 79 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC---ceEEEEEeccccHHHHHhcCceeCcEEEEEECCc
Confidence 45666553 589999999999999999999999999999965 4999999999999999999999999999999995
Q ss_pred ee
Q 010469 179 HK 180 (510)
Q Consensus 179 ~~ 180 (510)
..
T Consensus 80 h~ 81 (114)
T cd02986 80 HM 81 (114)
T ss_pred EE
Confidence 54
No 56
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.65 E-value=2.1e-15 Score=118.53 Aligned_cols=88 Identities=27% Similarity=0.542 Sum_probs=79.6
Q ss_pred HHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCC-eeeeecC
Q 010469 106 VIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG-QHKAYNG 184 (510)
Q Consensus 106 ~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g-~~~~y~g 184 (510)
+.+.+++++|+||++||++|+.+.|.++++++++.+ ++.++.+|++++++++.+++|.++|++++|++| ...++.|
T Consensus 9 ~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~---~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g 85 (97)
T cd02949 9 YHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG---AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISG 85 (97)
T ss_pred HHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC---ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeC
Confidence 335778999999999999999999999999999875 699999999999999999999999999999999 4568899
Q ss_pred CCCHHHHHHHHH
Q 010469 185 GRTKDAIVTWIK 196 (510)
Q Consensus 185 ~~~~~~l~~~i~ 196 (510)
..+.+.+.+|++
T Consensus 86 ~~~~~~~~~~l~ 97 (97)
T cd02949 86 VKMKSEYREFIE 97 (97)
T ss_pred CccHHHHHHhhC
Confidence 999999988873
No 57
>PTZ00102 disulphide isomerase; Provisional
Probab=99.64 E-value=1.7e-15 Score=155.71 Aligned_cols=134 Identities=30% Similarity=0.581 Sum_probs=111.1
Q ss_pred ccccccCCCCCCCCCCCCCCCCccCCCCcEEeChhcHHHH-HhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCC
Q 010469 67 DFSDDFDDENYHDFDDSEYKEPEIDDKDVVVLKERNFSDV-IENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANES 145 (510)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~ 145 (510)
.|-.++.+|...+...+ .+.|....+.|..+++++|++. .+.+++++|+|||+||++|+.+.|.|+++++.+++. ..
T Consensus 332 ~Fv~~~~~gk~~~~~~s-e~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~ 409 (477)
T PTZ00102 332 EFFKDVEAGKVEKSIKS-EPIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDN-DS 409 (477)
T ss_pred HHHHHHhCCCCCccccc-CCCCCCCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccC-Cc
Confidence 34445555655554443 3345556778999999999987 477899999999999999999999999999988762 36
Q ss_pred eEEEEEeCcccHHHHHhCCCCcccEEEEEeCC-e-eeeecCCCCHHHHHHHHHHHcCCC
Q 010469 146 VVLAKVDATEENELAHEYDVQGFPTIYFFVDG-Q-HKAYNGGRTKDAIVTWIKKKIGPG 202 (510)
Q Consensus 146 v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g-~-~~~y~g~~~~~~l~~~i~~~~~~~ 202 (510)
+.++.+||+.+...++.++++++||+++|++| + ...|.|.++.+.+.+||.+....+
T Consensus 410 v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~~ 468 (477)
T PTZ00102 410 IIVAKMNGTANETPLEEFSWSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHATNP 468 (477)
T ss_pred EEEEEEECCCCccchhcCCCcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCCCC
Confidence 89999999999999999999999999999977 3 458999999999999999988653
No 58
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=6.2e-15 Score=142.95 Aligned_cols=223 Identities=21% Similarity=0.355 Sum_probs=141.4
Q ss_pred CCcEEeChhcHHHHHhCC-CeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcc--cHHHHHhCCCCccc
Q 010469 93 KDVVVLKERNFSDVIENN-KFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE--ENELAHEYDVQGFP 169 (510)
Q Consensus 93 ~~v~~l~~~~~~~~~~~~-~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~~P 169 (510)
+.|..|+..+|+.++... +-.+|.||++||++|++++|.|+++|+.+.++..-+.++.|||.+ +..+|++++|++||
T Consensus 39 D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~P 118 (606)
T KOG1731|consen 39 DPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYP 118 (606)
T ss_pred CCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCc
Confidence 679999999999988655 488999999999999999999999999999998889999999976 45799999999999
Q ss_pred EEEEEeCC-ee----eeecCCCCHHHHHHHHHHHc-----------CC---CcccccchhHHHHhccCCC-eEEEEEecC
Q 010469 170 TIYFFVDG-QH----KAYNGGRTKDAIVTWIKKKI-----------GP---GIYNITTLDEAERVLTSET-KVVLGYLNS 229 (510)
Q Consensus 170 ~~~~~~~g-~~----~~y~g~~~~~~l~~~i~~~~-----------~~---~~~~i~~~~~~~~~~~~~~-~~~v~~~~~ 229 (510)
++.+|..+ +. ..+.|+....++...+.+.+ -| ++.+-++..++.+...+.. .+.|++-..
T Consensus 119 tlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~yvAiv~e~~ 198 (606)
T KOG1731|consen 119 TLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTANYVAIVFETE 198 (606)
T ss_pred eeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhcccccccceeEEEEecC
Confidence 99999644 22 35566666666766666543 12 2444455666666554433 333333222
Q ss_pred CCCcchHHHHHhccccCceeEEEcCChhHHHh--hCCCCCCCCCeEEEeccCCCceeecc--CCCCCHHHHHHHHHhc--
Q 010469 230 LVGSESEVLADASRLEDDVNFYQTTNPDVAKI--FHLDSKVNRPALVMVKKETEKISYFA--DGKFDKSTIADFVFSN-- 303 (510)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~--~~~~~~~~~p~l~~~~~~~~~~~~y~--~g~~~~~~i~~fi~~~-- 303 (510)
...-....+...... ..+....+.+.+.... ++.. ..|..+++|.+......-. ..+...+.|.++|...
T Consensus 199 ~s~lg~~~~l~~l~~-~~v~vr~~~d~q~~~~~~l~~~---~~~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~lg~~~~ 274 (606)
T KOG1731|consen 199 PSDLGWANLLNDLPS-KQVGVRARLDTQNFPLFGLKPD---NFPLALLFRNGEQQPLWPSSSSRSAYVKKIDDLLGDKNE 274 (606)
T ss_pred CcccHHHHHHhhccC-CCcceEEEecchhccccccCCC---CchhhhhhcCCcccccccccccHHHHHHHHHHHhcCccc
Confidence 222222222222222 2222333333332222 3443 3688888887764433220 1122246788887753
Q ss_pred -CCCceeecCCCchhhh
Q 010469 304 -KLPLVTIFTRENAPSV 319 (510)
Q Consensus 304 -~~p~~~~lt~~~~~~~ 319 (510)
..|.+...+..+....
T Consensus 275 a~~pt~~p~~~~~~~~~ 291 (606)
T KOG1731|consen 275 ASGPTLHPITATTAAPT 291 (606)
T ss_pred cCCCCcCcccccccchh
Confidence 3455655555444443
No 59
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.60 E-value=1.1e-14 Score=126.40 Aligned_cols=100 Identities=21% Similarity=0.382 Sum_probs=81.8
Q ss_pred CCCcEEeCh-hcHHHHHhCC---CeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCc
Q 010469 92 DKDVVVLKE-RNFSDVIENN---KFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQG 167 (510)
Q Consensus 92 ~~~v~~l~~-~~~~~~~~~~---~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~ 167 (510)
-+.+.+++. ++|.+.+.+. .+++|+||++||++|+.+.|.|.++++++. .+.|+.||+++. .++.+|+|.+
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~----~vkF~kVd~d~~-~l~~~f~v~~ 135 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP----AVKFCKIRASAT-GASDEFDTDA 135 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC----CeEEEEEeccch-hhHHhCCCCC
Confidence 467889999 9999987543 499999999999999999999999999874 499999999987 8999999999
Q ss_pred ccEEEEEeCCeee-eecC-------CCCHHHHHHHHH
Q 010469 168 FPTIYFFVDGQHK-AYNG-------GRTKDAIVTWIK 196 (510)
Q Consensus 168 ~P~~~~~~~g~~~-~y~g-------~~~~~~l~~~i~ 196 (510)
+||+++|++|+.. ++.| ..+.+.|..++.
T Consensus 136 vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~ 172 (175)
T cd02987 136 LPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLV 172 (175)
T ss_pred CCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHH
Confidence 9999999999443 4444 234455555543
No 60
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.60 E-value=9.2e-15 Score=117.78 Aligned_cols=94 Identities=21% Similarity=0.255 Sum_probs=81.1
Q ss_pred HHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCC---ee
Q 010469 103 FSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG---QH 179 (510)
Q Consensus 103 ~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g---~~ 179 (510)
|.+.+.+...++|.||++||++|+.+.|.++++++.+ + .+.+..+|.+++++++.+|+|.++|++++|++| ..
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~---~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~ 90 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D---KLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGG 90 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C---ceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecce
Confidence 4444556677899999999999999999999999875 3 589999999999999999999999999999876 23
Q ss_pred eeecCCCCHHHHHHHHHHHcC
Q 010469 180 KAYNGGRTKDAIVTWIKKKIG 200 (510)
Q Consensus 180 ~~y~g~~~~~~l~~~i~~~~~ 200 (510)
.++.|......+.+||...+.
T Consensus 91 ~~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 91 IRYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred EEEEecCchHHHHHHHHHHHh
Confidence 478899999999999987653
No 61
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.58 E-value=2e-14 Score=143.48 Aligned_cols=89 Identities=21% Similarity=0.389 Sum_probs=73.2
Q ss_pred CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEE----------------------------eCcccHHHH
Q 010469 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKV----------------------------DATEENELA 160 (510)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~v----------------------------d~~~~~~~~ 160 (510)
+++++||+|||+||++|++++|.|.+++++++.. ++.++.| +++.+..++
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~--~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~la 132 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS--SANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLA 132 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC--CeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHH
Confidence 6899999999999999999999999999988742 3555444 334556788
Q ss_pred HhCCCCcccEEEEEe-CCe-eeeecCCCCHHHHHHHHHHHc
Q 010469 161 HEYDVQGFPTIYFFV-DGQ-HKAYNGGRTKDAIVTWIKKKI 199 (510)
Q Consensus 161 ~~~~v~~~P~~~~~~-~g~-~~~y~g~~~~~~l~~~i~~~~ 199 (510)
+.|+|.++|+++++. +|+ ...+.|..+.+.|..+|+..-
T Consensus 133 k~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~~ 173 (521)
T PRK14018 133 QSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNPN 173 (521)
T ss_pred HHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHhh
Confidence 999999999998884 784 468899999999999998443
No 62
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.58 E-value=2.2e-14 Score=116.76 Aligned_cols=98 Identities=11% Similarity=0.217 Sum_probs=78.1
Q ss_pred CcEEeChhcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccH-----------HHHHh
Q 010469 94 DVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN-----------ELAHE 162 (510)
Q Consensus 94 ~v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-----------~~~~~ 162 (510)
.+..++.+++.+.+.+++.++|+|+++|||+|+.+.|.|.+++++. ++.++.||.+.++ ++.++
T Consensus 7 ~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-----~~~~y~vdvd~~~~~~~~~~~~~~~~~~~ 81 (122)
T TIGR01295 7 GLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT-----KAPIYYIDSENNGSFEMSSLNDLTAFRSR 81 (122)
T ss_pred cceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc-----CCcEEEEECCCccCcCcccHHHHHHHHHH
Confidence 4677888999999999999999999999999999999999999872 3556667766432 55566
Q ss_pred CC----CCcccEEEEEeCCee-eeecC-CCCHHHHHHHHH
Q 010469 163 YD----VQGFPTIYFFVDGQH-KAYNG-GRTKDAIVTWIK 196 (510)
Q Consensus 163 ~~----v~~~P~~~~~~~g~~-~~y~g-~~~~~~l~~~i~ 196 (510)
++ |.++||+++|++|+. .+..| ..+.+.|.+|+.
T Consensus 82 ~~i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 82 FGIPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred cCCcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 55 556999999999944 56678 456888888763
No 63
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.58 E-value=5.7e-14 Score=124.21 Aligned_cols=87 Identities=17% Similarity=0.321 Sum_probs=70.4
Q ss_pred hCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccH-----------------------HHHHhCC
Q 010469 108 ENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN-----------------------ELAHEYD 164 (510)
Q Consensus 108 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-----------------------~~~~~~~ 164 (510)
.++++++|+||++||++|++++|.+.+++++ ++.++.|+.++++ .+++.|+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~------~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 139 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ------GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG 139 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc------CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcC
Confidence 3688999999999999999999999888542 4677777754432 2455789
Q ss_pred CCcccEEEEEe-CC-eeeeecCCCCHHHHHHHHHHHcC
Q 010469 165 VQGFPTIYFFV-DG-QHKAYNGGRTKDAIVTWIKKKIG 200 (510)
Q Consensus 165 v~~~P~~~~~~-~g-~~~~y~g~~~~~~l~~~i~~~~~ 200 (510)
+.++|++++++ +| ....+.|..+.+.+.++++..+.
T Consensus 140 v~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 140 VYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred CCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 99999999996 88 45688999999999999988774
No 64
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.57 E-value=3.8e-14 Score=110.55 Aligned_cols=90 Identities=39% Similarity=0.759 Sum_probs=80.9
Q ss_pred cHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCCe-ee
Q 010469 102 NFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQ-HK 180 (510)
Q Consensus 102 ~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~-~~ 180 (510)
+|++.+..+++++|.||++||++|+.+.|.+.++++. . .++.++.+|++..+.+++++++.++|+++++++|. ..
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~---~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~ 77 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-Y---PKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVD 77 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-C---CCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEE
Confidence 5677777779999999999999999999999999987 2 36999999999999999999999999999999994 56
Q ss_pred eecCCCCHHHHHHHH
Q 010469 181 AYNGGRTKDAIVTWI 195 (510)
Q Consensus 181 ~y~g~~~~~~l~~~i 195 (510)
.+.|..+.+.+.+||
T Consensus 78 ~~~g~~~~~~l~~~i 92 (93)
T cd02947 78 RVVGADPKEELEEFL 92 (93)
T ss_pred EEecCCCHHHHHHHh
Confidence 888988889988886
No 65
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.56 E-value=4.9e-14 Score=116.59 Aligned_cols=97 Identities=21% Similarity=0.421 Sum_probs=80.9
Q ss_pred hcHHHHHhCC-CeEEEEEECCCChHHhhhhHHHH---HHHHHHhhcCCCeEEEEEeCccc-------------HHHHHhC
Q 010469 101 RNFSDVIENN-KFVMVEFYAPWCGHCQALAPEYA---AAATELKSANESVVLAKVDATEE-------------NELAHEY 163 (510)
Q Consensus 101 ~~~~~~~~~~-~~~~v~f~a~wC~~C~~~~p~~~---~~~~~~~~~~~~v~~~~vd~~~~-------------~~~~~~~ 163 (510)
+.+++..+++ ++++|+||++||++|+.+.|.+. .+.+.+++ ++.++.+|.+.+ ..++.+|
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~ 80 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA---HFVVVYINIDGDKEVTDFDGEALSEKELARKY 80 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh---heEEEEEEccCCceeeccCCCCccHHHHHHHc
Confidence 4566677888 99999999999999999999885 56666655 688899998764 6899999
Q ss_pred CCCcccEEEEEe-C-Ce-eeeecCCCCHHHHHHHHHHHcC
Q 010469 164 DVQGFPTIYFFV-D-GQ-HKAYNGGRTKDAIVTWIKKKIG 200 (510)
Q Consensus 164 ~v~~~P~~~~~~-~-g~-~~~y~g~~~~~~l~~~i~~~~~ 200 (510)
+|.++|++++|. + |+ ..++.|..+.+.+.+++...+.
T Consensus 81 ~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 81 RVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred CCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 999999999997 4 54 4588999999999999987664
No 66
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=3.6e-14 Score=123.06 Aligned_cols=97 Identities=28% Similarity=0.537 Sum_probs=84.4
Q ss_pred hhcHHHHHh--CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCC
Q 010469 100 ERNFSDVIE--NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG 177 (510)
Q Consensus 100 ~~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g 177 (510)
+..|+..+. +++.++|.|+|.||+||+...|.|+.++.+|.+ ..|.+||.++.+..+..+||...||+++|++|
T Consensus 9 d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~----aVFlkVdVd~c~~taa~~gV~amPTFiff~ng 84 (288)
T KOG0908|consen 9 DSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG----AVFLKVDVDECRGTAATNGVNAMPTFIFFRNG 84 (288)
T ss_pred cHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc----cEEEEEeHHHhhchhhhcCcccCceEEEEecC
Confidence 456776663 457999999999999999999999999999966 89999999999999999999999999999999
Q ss_pred e-eeeecCCCCHHHHHHHHHHHcCC
Q 010469 178 Q-HKAYNGGRTKDAIVTWIKKKIGP 201 (510)
Q Consensus 178 ~-~~~y~g~~~~~~l~~~i~~~~~~ 201 (510)
+ +.++.| .+...|++-+.+++..
T Consensus 85 ~kid~~qG-Ad~~gLe~kv~~~~st 108 (288)
T KOG0908|consen 85 VKIDQIQG-ADASGLEEKVAKYAST 108 (288)
T ss_pred eEeeeecC-CCHHHHHHHHHHHhcc
Confidence 4 456666 5788899999888754
No 67
>PTZ00062 glutaredoxin; Provisional
Probab=99.52 E-value=5.3e-13 Score=117.47 Aligned_cols=111 Identities=15% Similarity=0.219 Sum_probs=87.4
Q ss_pred ChhcHHHHHhCC-CeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCC
Q 010469 99 KERNFSDVIENN-KFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG 177 (510)
Q Consensus 99 ~~~~~~~~~~~~-~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g 177 (510)
+.+++.+.+.++ +.++++|||+||++|+.+.|.+.++++++.. +.|+.||.+ |+|.++|++++|++|
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~----~~F~~V~~d--------~~V~~vPtfv~~~~g 72 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS----LEFYVVNLA--------DANNEYGVFEFYQNS 72 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC----cEEEEEccc--------cCcccceEEEEEECC
Confidence 456778887654 7789999999999999999999999998854 999999976 999999999999999
Q ss_pred ee-eeecCCCCHHHHHHHHHHHcCCCcccccchhHHHHhccCCCeEE
Q 010469 178 QH-KAYNGGRTKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVV 223 (510)
Q Consensus 178 ~~-~~y~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 223 (510)
+. .++.|. +...+..++.+......... ..+-++++++++++++
T Consensus 73 ~~i~r~~G~-~~~~~~~~~~~~~~~~~~~~-~~~~v~~li~~~~Vvv 117 (204)
T PTZ00062 73 QLINSLEGC-NTSTLVSFIRGWAQKGSSED-TVEKIERLIRNHKILL 117 (204)
T ss_pred EEEeeeeCC-CHHHHHHHHHHHcCCCCHHH-HHHHHHHHHhcCCEEE
Confidence 55 466665 68999999998887654321 2244566666665443
No 68
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=99.49 E-value=1.4e-13 Score=109.98 Aligned_cols=107 Identities=23% Similarity=0.183 Sum_probs=95.7
Q ss_pred eeecCCCchhhhccCCccceEEEEEeccchhhHHHHHHHHHHh---ccCceEEEEEEcCCcccccchhhhcCCCCCCCcE
Q 010469 308 VTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKS---FKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV 384 (510)
Q Consensus 308 ~~~lt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~A~~---~~~~~~f~~vd~~~~~~~~~l~~~~gi~~~~~P~ 384 (510)
|+++|.++...++.++.|.+++++ ..++.+.+.+.++++|++ +++++.|+++|.+... ..+++||++..+.|+
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f-~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~---~~~~~fgl~~~~~P~ 76 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFH-DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFR---HPLLHLGKTPADLPV 76 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEe-cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhh---hHHHHcCCCHhHCCE
Confidence 578999999999999999988888 667788999999999999 9999999999987633 478999999888999
Q ss_pred EEEeeCCCCCccc-CCCCCCHHHHHHHHHHhhcCc
Q 010469 385 LAYTGNDDAKKHI-LDGELTLDKIKTFGEDFLEGK 418 (510)
Q Consensus 385 ~~i~~~~~~~~y~-~~~~~t~e~i~~Fi~~~~~Gk 418 (510)
+++.+.....+|. +.+.++.++|.+|++++++|+
T Consensus 77 i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~Gk 111 (111)
T cd03072 77 IAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSGK 111 (111)
T ss_pred EEEEcchhcCcCCCCccccCHHHHHHHHHHHhcCC
Confidence 9999887668998 778999999999999999996
No 69
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.48 E-value=2.8e-13 Score=119.10 Aligned_cols=107 Identities=17% Similarity=0.343 Sum_probs=82.0
Q ss_pred cccccCCCCCCCCCCCCCCCCccCCCCcEEeChhcHHHHH-hCC--CeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCC
Q 010469 68 FSDDFDDENYHDFDDSEYKEPEIDDKDVVVLKERNFSDVI-ENN--KFVMVEFYAPWCGHCQALAPEYAAAATELKSANE 144 (510)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~-~~~--~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~ 144 (510)
|-..++..|......... ...-+.|..++..+|...+ ..+ .+|||+||++||++|+.+.|.|.++|+++..
T Consensus 60 ~Le~yR~kRl~el~~~~~---~~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~--- 133 (192)
T cd02988 60 FLEEYRRKRLAEMKALAE---KSKFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD--- 133 (192)
T ss_pred HHHHHHHHHHHHHHHhhh---hCCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC---
Confidence 566665555544333211 1234679999999999755 333 5899999999999999999999999999854
Q ss_pred CeEEEEEeCcccHHHHHhCCCCcccEEEEEeCCee-eeecC
Q 010469 145 SVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQH-KAYNG 184 (510)
Q Consensus 145 ~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~-~~y~g 184 (510)
+.|+.||++.. +..|++.++||+++|++|.. .++.|
T Consensus 134 -vkFvkI~ad~~---~~~~~i~~lPTlliyk~G~~v~~ivG 170 (192)
T cd02988 134 -TKFVKIISTQC---IPNYPDKNLPTILVYRNGDIVKQFIG 170 (192)
T ss_pred -CEEEEEEhHHh---HhhCCCCCCCEEEEEECCEEEEEEeC
Confidence 89999998653 58899999999999999944 46665
No 70
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.48 E-value=2.2e-13 Score=108.57 Aligned_cols=87 Identities=16% Similarity=0.263 Sum_probs=77.8
Q ss_pred CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCC--cccEEEEEeC--CeeeeecC
Q 010469 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQ--GFPTIYFFVD--GQHKAYNG 184 (510)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~--~~P~~~~~~~--g~~~~y~g 184 (510)
.++++++.||++||++|+.+.|.++++|+++++ ++.|+.||+++.+.+++.+++. ++|+++++++ |..+.+.+
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~---~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~ 87 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKG---KLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPE 87 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC---eEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCc
Confidence 367999999999999999999999999999987 7999999999999999999999 9999999987 65555554
Q ss_pred -CCCHHHHHHHHHHH
Q 010469 185 -GRTKDAIVTWIKKK 198 (510)
Q Consensus 185 -~~~~~~l~~~i~~~ 198 (510)
..+.+.|.+|+...
T Consensus 88 ~~~~~~~l~~fi~~~ 102 (103)
T cd02982 88 EELTAESLEEFVEDF 102 (103)
T ss_pred cccCHHHHHHHHHhh
Confidence 45899999999864
No 71
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.48 E-value=4e-13 Score=102.15 Aligned_cols=80 Identities=28% Similarity=0.455 Sum_probs=71.7
Q ss_pred EEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCCeeeeecCCCCHHHHH
Q 010469 113 VMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIV 192 (510)
Q Consensus 113 ~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~y~g~~~~~~l~ 192 (510)
.+..||++||++|+...|.++++++.++. .+.+..||+++++++++++++.++|++++ +|+ .++.|..+.+.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~-~~~~G~~~~~~l~ 75 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD---AVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD-VEFIGAPTKEELV 75 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC---ceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE-EEEecCCCHHHHH
Confidence 47789999999999999999999998865 68999999999999999999999999986 665 4788999999999
Q ss_pred HHHHHH
Q 010469 193 TWIKKK 198 (510)
Q Consensus 193 ~~i~~~ 198 (510)
+++++.
T Consensus 76 ~~l~~~ 81 (82)
T TIGR00411 76 EAIKKR 81 (82)
T ss_pred HHHHhh
Confidence 998765
No 72
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.47 E-value=1.3e-12 Score=114.99 Aligned_cols=102 Identities=22% Similarity=0.417 Sum_probs=80.4
Q ss_pred cEEeChhcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcc-------------------
Q 010469 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE------------------- 155 (510)
Q Consensus 95 v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~------------------- 155 (510)
+..++++.+......+++++|+||++||++|+...|.+.++++++++. ++.++.|+++.
T Consensus 46 ~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~--~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~ 123 (173)
T PRK03147 46 LTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK--GVEIIAVNVDETELAVKNFVNRYGLTFPVA 123 (173)
T ss_pred eecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC--CeEEEEEEcCCCHHHHHHHHHHhCCCceEE
Confidence 334445444432235789999999999999999999999999999872 47788887653
Q ss_pred ---cHHHHHhCCCCcccEEEEEe-CCee-eeecCCCCHHHHHHHHHHH
Q 010469 156 ---ENELAHEYDVQGFPTIYFFV-DGQH-KAYNGGRTKDAIVTWIKKK 198 (510)
Q Consensus 156 ---~~~~~~~~~v~~~P~~~~~~-~g~~-~~y~g~~~~~~l~~~i~~~ 198 (510)
+..+++.|++.++|++++++ +|+. ..+.|..+.+.+.+++.+.
T Consensus 124 ~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 124 IDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred ECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 35678899999999999996 6744 5789999999999988754
No 73
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.47 E-value=3.1e-13 Score=108.15 Aligned_cols=93 Identities=18% Similarity=0.371 Sum_probs=72.6
Q ss_pred ChhcHHHHHhC--CCeEEEEEEC-------CCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcc-------cHHHHHh
Q 010469 99 KERNFSDVIEN--NKFVMVEFYA-------PWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-------ENELAHE 162 (510)
Q Consensus 99 ~~~~~~~~~~~--~~~~~v~f~a-------~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-------~~~~~~~ 162 (510)
+.++|.+.+.. +++++|.||| +||++|+.+.|.+++++.++++ ++.|+.||+++ +.++..+
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~---~v~fv~Vdvd~~~~w~d~~~~~~~~ 84 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE---DCVFIYCDVGDRPYWRDPNNPFRTD 84 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC---CCEEEEEEcCCcccccCcchhhHhc
Confidence 35667777754 6899999999 9999999999999999999875 58999999976 4588999
Q ss_pred CCCC-cccEEEEEeCCeeeeecCCCCHHHHHHH
Q 010469 163 YDVQ-GFPTIYFFVDGQHKAYNGGRTKDAIVTW 194 (510)
Q Consensus 163 ~~v~-~~P~~~~~~~g~~~~y~g~~~~~~l~~~ 194 (510)
++|. ++||+++|++|....-..-.+.+.+..|
T Consensus 85 ~~I~~~iPT~~~~~~~~~l~~~~c~~~~~~~~~ 117 (119)
T cd02952 85 PKLTTGVPTLLRWKTPQRLVEDECLQADLVEMF 117 (119)
T ss_pred cCcccCCCEEEEEcCCceecchhhcCHHHHHHh
Confidence 9998 9999999987743332222344444433
No 74
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=6.5e-13 Score=131.62 Aligned_cols=169 Identities=30% Similarity=0.469 Sum_probs=137.0
Q ss_pred chhhhccCCccceEEEEEec--cchhhHHHHHHHHHHhccCceEEEEEEcCCcccccchhhhcCCCCCCCcEEEEeeCCC
Q 010469 315 NAPSVFESPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDD 392 (510)
Q Consensus 315 ~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~~~~~~l~~~~gi~~~~~P~~~i~~~~~ 392 (510)
+............++.|... ..|..+...+++++..+++++.++.+|+.. +..+|+.+++... |++.++..+
T Consensus 38 ~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~---~~~~~~~y~i~gf--Ptl~~f~~~- 111 (383)
T KOG0191|consen 38 SFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDE---HKDLCEKYGIQGF--PTLKVFRPG- 111 (383)
T ss_pred ccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchh---hHHHHHhcCCccC--cEEEEEcCC-
Confidence 33333334444556656654 789999999999999999999999999987 6689999999664 999999776
Q ss_pred CCcccCCCCCCHHHHHHHHHHhhcCcccccccCCCCCCCCCC-ceEEEeCcchhhHhhccCCcEEEEEeCCCChhhhhhh
Q 010469 393 AKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDG-DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFE 471 (510)
Q Consensus 393 ~~~y~~~~~~t~e~i~~Fi~~~~~Gkl~~~~kSe~~p~~~~~-~~~~l~~~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~ 471 (510)
.....+.+..+.+.+..|+..-++..+... .+ .+..+...+|...+.+...+++|.||+|||++|+.+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~ 181 (383)
T KOG0191|consen 112 KKPIDYSGPRNAESLAEFLIKELEPSVKKL----------VEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLA 181 (383)
T ss_pred CceeeccCcccHHHHHHHHHHhhccccccc----------cCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcC
Confidence 566677788999999999988776544321 22 4788999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEEEeCCCCcC
Q 010469 472 PTYNKLAKHLRGVDSIVIAKMDGTTNEH 499 (510)
Q Consensus 472 ~~~~~~a~~~~~~~~~~~~~id~~~n~~ 499 (510)
|.|.++++.+.....+.++.+|++.+..
T Consensus 182 ~~~~~~a~~~~~~~~v~~~~~d~~~~~~ 209 (383)
T KOG0191|consen 182 PEWEKLAKLLKSKENVELGKIDATVHKS 209 (383)
T ss_pred hHHHHHHHHhccCcceEEEeeccchHHH
Confidence 9999999999765689999999884333
No 75
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.46 E-value=1.2e-12 Score=110.46 Aligned_cols=87 Identities=14% Similarity=0.295 Sum_probs=63.8
Q ss_pred CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcc----------cHHHH-HhC---CCCcccEEEEE
Q 010469 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE----------ENELA-HEY---DVQGFPTIYFF 174 (510)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~----------~~~~~-~~~---~v~~~P~~~~~ 174 (510)
.+++.+|+|||+||++|++++|.++++++++.- .+..+.+|-.. ..... ..+ ++.++|+++++
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~---~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LI 125 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFGL---PVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLV 125 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcCC---cEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEE
Confidence 355679999999999999999999999988732 34444444221 12333 344 78999999999
Q ss_pred e-CC-ee-eeecCCCCHHHHHHHHHHH
Q 010469 175 V-DG-QH-KAYNGGRTKDAIVTWIKKK 198 (510)
Q Consensus 175 ~-~g-~~-~~y~g~~~~~~l~~~i~~~ 198 (510)
+ +| .. ..+.|..+.+.+.+.+.+.
T Consensus 126 D~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 126 NVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred eCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 6 55 33 3688999999998888764
No 76
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.43 E-value=3.9e-13 Score=107.39 Aligned_cols=67 Identities=16% Similarity=0.249 Sum_probs=59.7
Q ss_pred CCceEEEeCcchhhHh--hccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCcc
Q 010469 433 DGDVKIVVGNNFDEIV--LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 501 (510)
Q Consensus 433 ~~~~~~l~~~~f~~~v--~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~ 501 (510)
.+.|..++.++|++.+ .+.++.++|.||||||++|+.++|.+.++|+.+++ .+.|++||++.+....
T Consensus 8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~--~v~~~~Vd~d~~~~l~ 76 (113)
T cd03006 8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD--QVLFVAINCWWPQGKC 76 (113)
T ss_pred CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEECCCChHHH
Confidence 5678899999999874 56778999999999999999999999999999976 6999999999887654
No 77
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.3e-13 Score=110.38 Aligned_cols=71 Identities=21% Similarity=0.529 Sum_probs=62.9
Q ss_pred CceEEEeCcchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccceeEeee
Q 010469 434 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKVIFDV 508 (510)
Q Consensus 434 ~~~~~l~~~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~~~~~v 508 (510)
..+..++..+|++.|.+++.||+|.|||+||+||+.+.|.+++++..+.+ .+.|+++|.+.+...+.. |+|
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g--~~k~~kvdtD~~~ela~~--Y~I 113 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG--KFKLYKVDTDEHPELAED--YEI 113 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC--eEEEEEEccccccchHhh--cce
Confidence 34566888999999999999999999999999999999999999999987 999999999877766665 555
No 78
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.41 E-value=1.7e-12 Score=108.20 Aligned_cols=76 Identities=25% Similarity=0.409 Sum_probs=61.1
Q ss_pred CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhc-----CCCeEEEEEeCcccH-------------------------H
Q 010469 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSA-----NESVVLAKVDATEEN-------------------------E 158 (510)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~-----~~~v~~~~vd~~~~~-------------------------~ 158 (510)
++++++|+|||+||++|++++|.+.++++++++. ..++.++.|+.+++. .
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 5789999999999999999999999999888753 235888888766432 4
Q ss_pred HHHhCCCCcccEEEEEe-CCeeeeecC
Q 010469 159 LAHEYDVQGFPTIYFFV-DGQHKAYNG 184 (510)
Q Consensus 159 ~~~~~~v~~~P~~~~~~-~g~~~~y~g 184 (510)
++++|++.++|++++++ +|++..-.|
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~~~~ 130 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAANA 130 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEeeCh
Confidence 67788999999999996 776655444
No 79
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.39 E-value=7.5e-12 Score=107.26 Aligned_cols=83 Identities=11% Similarity=0.210 Sum_probs=66.0
Q ss_pred EEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCccc-------------HHHHHhCCC--CcccEEEEEe-CC
Q 010469 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE-------------NELAHEYDV--QGFPTIYFFV-DG 177 (510)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-------------~~~~~~~~v--~~~P~~~~~~-~g 177 (510)
+|+||++||++|++++|.+.++++++. +.++.|+.++. ..+...|++ .++|++++++ +|
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g-----~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G 147 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG-----FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNT 147 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC-----CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCC
Confidence 888999999999999999999999872 45555554422 235667884 6999999995 77
Q ss_pred ee--eeecCCCCHHHHHHHHHHHcCC
Q 010469 178 QH--KAYNGGRTKDAIVTWIKKKIGP 201 (510)
Q Consensus 178 ~~--~~y~g~~~~~~l~~~i~~~~~~ 201 (510)
+. ..+.|..+.+.+.+.+...+..
T Consensus 148 ~i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 148 LEALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred cEEEEEEECCCCHHHHHHHHHHHHhh
Confidence 54 3699999999999998887754
No 80
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.35 E-value=1.6e-12 Score=105.20 Aligned_cols=96 Identities=21% Similarity=0.432 Sum_probs=66.1
Q ss_pred hcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCc--ccEEEEEe-CC
Q 010469 101 RNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQG--FPTIYFFV-DG 177 (510)
Q Consensus 101 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~--~P~~~~~~-~g 177 (510)
+.+.....++++++|.|||+||++|+.+.|.+.+....... ..++..+.+|.... .....+++.+ +|++++|. +|
T Consensus 10 ~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd~~~~-~~~~~~~~~g~~vPt~~f~~~~G 87 (117)
T cd02959 10 DGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-SHNFVMVNLEDDEE-PKDEEFSPDGGYIPRILFLDPSG 87 (117)
T ss_pred HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-cCcEEEEEecCCCC-chhhhcccCCCccceEEEECCCC
Confidence 34455557789999999999999999999999998776543 22344444443322 3457888876 99999996 88
Q ss_pred ee----eeecCCCCHHHHHHHHHHH
Q 010469 178 QH----KAYNGGRTKDAIVTWIKKK 198 (510)
Q Consensus 178 ~~----~~y~g~~~~~~l~~~i~~~ 198 (510)
+. ....|..+.+.+.+.+...
T Consensus 88 k~~~~~~~~~~~~~~~~f~~~~~~~ 112 (117)
T cd02959 88 DVHPEIINKKGNPNYKYFYSSAAQV 112 (117)
T ss_pred CCchhhccCCCCccccccCCCHHHH
Confidence 33 2455666655555555443
No 81
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.35 E-value=5.4e-12 Score=105.33 Aligned_cols=73 Identities=23% Similarity=0.518 Sum_probs=59.0
Q ss_pred CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCccc------------------------HHHHHhCC
Q 010469 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE------------------------NELAHEYD 164 (510)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~------------------------~~~~~~~~ 164 (510)
.+++++|+||++||++|+++.|.+.++++++++.+.++.++.|+.+.. ..+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 678999999999999999999999999999976433566666655433 35778899
Q ss_pred CCcccEEEEEe-CCeeee
Q 010469 165 VQGFPTIYFFV-DGQHKA 181 (510)
Q Consensus 165 v~~~P~~~~~~-~g~~~~ 181 (510)
|.++|++++++ +|+...
T Consensus 97 v~~~P~~~lid~~G~i~~ 114 (131)
T cd03009 97 IEGIPTLIILDADGEVVT 114 (131)
T ss_pred CCCCCEEEEECCCCCEEc
Confidence 99999999997 776543
No 82
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.34 E-value=1.4e-09 Score=111.66 Aligned_cols=310 Identities=16% Similarity=0.235 Sum_probs=208.3
Q ss_pred CCcEEeC-hhcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEE
Q 010469 93 KDVVVLK-ERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTI 171 (510)
Q Consensus 93 ~~v~~l~-~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~ 171 (510)
..+..++ .++++..+....+.+|.|+.. .. ......|.++|..+.+ ...+.... .+..+..+++.. -|++
T Consensus 111 ~~~~~i~~~~~~~~~~~~~~~~vi~~~~~-~~--~~~~~~~~~~a~~~~~---~~~~~~~~--~~~~~~~~~~~~-~~~~ 181 (462)
T TIGR01130 111 PAVKEIETVADLEAFLADDDVVVIGFFKD-LD--SELNDTFLSVAEKLRD---VYFFFAHS--SDVAAFAKLGAF-PDSV 181 (462)
T ss_pred CCceeecCHHHHHHHHhcCCcEEEEEECC-CC--cHHHHHHHHHHHHhhh---ccceEEec--CCHHHHhhcCCC-CCcE
Confidence 3455564 677888887777888888754 22 3666788888888877 33322222 234666777764 4666
Q ss_pred EEEeCC----eeeeecCCC--CHHHHHHHHHHHcCCCcccccchhHHHHhccCCCeEEEEEecCCCC----cchHHHHHh
Q 010469 172 YFFVDG----QHKAYNGGR--TKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVG----SESEVLADA 241 (510)
Q Consensus 172 ~~~~~g----~~~~y~g~~--~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~~~ 241 (510)
.+|+.. ....|.|.. +.+.|..||....-|.+.+++. ..+..+.......+++++..... .....+..+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 260 (462)
T TIGR01130 182 VLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQ-ETAAKYFESGPLVVLYYNVDESLDPFEELRNRFLEA 260 (462)
T ss_pred EEecccccccccccccCcccCCHHHHHHHHHHcCCCceEeeCC-cchhhHhCCCCceeEEEEecCCchHHHHHHHHHHHH
Confidence 666432 223577765 5589999999999888888754 66666666654444333333222 223456666
Q ss_pred c-cccC-ceeEEEcCCh---hHHHhhCCCCCCCCCeEEEeccCCCceeeccCCCCCHHHHHHHHHhcC------------
Q 010469 242 S-RLED-DVNFYQTTNP---DVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNK------------ 304 (510)
Q Consensus 242 ~-~~~~-~~~f~~~~~~---~l~~~~~~~~~~~~p~l~~~~~~~~~~~~y~~g~~~~~~i~~fi~~~~------------ 304 (510)
+ ++.+ .+.|+.+... .+...+|+.. ...|.++++...+.....+..+.++.+.|.+||....
T Consensus 261 a~~~~~~~i~f~~~d~~~~~~~~~~~~~~~-~~~P~~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~ 339 (462)
T TIGR01130 261 AKKFRGKFVNFAVADEEDFGRELEYFGLKA-EKFPAVAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSEP 339 (462)
T ss_pred HHHCCCCeEEEEEecHHHhHHHHHHcCCCc-cCCceEEEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCCeeeccCC
Confidence 6 5664 7888876543 5777788874 2379999998765233444233788999999999643
Q ss_pred -----CCceeecCCCchhhhccCCccceEEEEEec--cchhhHHHHHHHHHHhccC---ceEEEEEEcCCcccccchhhh
Q 010469 305 -----LPLVTIFTRENAPSVFESPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEY 374 (510)
Q Consensus 305 -----~p~~~~lt~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~A~~~~~---~~~f~~vd~~~~~~~~~l~~~ 374 (510)
...+..++..++..+.....+.+++.|... ..|+...+.+.++|..+++ ++.|+.+|+.... +..
T Consensus 340 ~p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~----~~~- 414 (462)
T TIGR01130 340 IPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND----VPP- 414 (462)
T ss_pred CCccCCCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc----cCC-
Confidence 113456777788777655555666666554 6799999999999999988 7999999987533 333
Q ss_pred cCCCCCCCcEEEEeeCCCC-CcccCCCCCCHHHHHHHHHHhhcCccc
Q 010469 375 FGITGEAPKVLAYTGNDDA-KKHILDGELTLDKIKTFGEDFLEGKLK 420 (510)
Q Consensus 375 ~gi~~~~~P~~~i~~~~~~-~~y~~~~~~t~e~i~~Fi~~~~~Gkl~ 420 (510)
+++. ..|+++++..++. ....+.|..+.+.|.+|+....+.+++
T Consensus 415 ~~i~--~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~ 459 (462)
T TIGR01130 415 FEVE--GFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHATFPLE 459 (462)
T ss_pred CCcc--ccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCCCCCc
Confidence 6664 4599988866543 235567889999999999998876654
No 83
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.33 E-value=1.8e-12 Score=102.78 Aligned_cols=66 Identities=23% Similarity=0.500 Sum_probs=57.6
Q ss_pred ceEEEeCcchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccce
Q 010469 435 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 503 (510)
Q Consensus 435 ~~~~l~~~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~ 503 (510)
.+..++..+|++.+. .+++++|+||++||++|+.+.|.|.++++.+++ .+.|+++|++.+.....+
T Consensus 2 ~~~~l~~~~f~~~v~-~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~--~~~~~~vd~~~~~~~~~~ 67 (101)
T cd03003 2 EIVTLDRGDFDAAVN-SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG--VIRIGAVNCGDDRMLCRS 67 (101)
T ss_pred CeEEcCHhhHHHHhc-CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC--ceEEEEEeCCccHHHHHH
Confidence 467789999999884 458999999999999999999999999999986 699999999987665444
No 84
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.33 E-value=2.1e-11 Score=106.67 Aligned_cols=86 Identities=20% Similarity=0.356 Sum_probs=68.6
Q ss_pred hCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCc-----------------------ccHHHHHhCC
Q 010469 108 ENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDAT-----------------------EENELAHEYD 164 (510)
Q Consensus 108 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~-----------------------~~~~~~~~~~ 164 (510)
.++++++|+||++||++|+++.|.+.+++++ ++.++.|+.+ .+..+.+.|+
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~------~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~ 134 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD------GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLG 134 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc------CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcC
Confidence 4678999999999999999999999888652 3555555532 2335667789
Q ss_pred CCcccEEEEEe-CCe-eeeecCCCCHHHHHHHHHHHc
Q 010469 165 VQGFPTIYFFV-DGQ-HKAYNGGRTKDAIVTWIKKKI 199 (510)
Q Consensus 165 v~~~P~~~~~~-~g~-~~~y~g~~~~~~l~~~i~~~~ 199 (510)
+.++|++++++ +|+ ...+.|..+.+.+.+++++.+
T Consensus 135 v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 135 VYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred CeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 99999988885 784 567889999999999998876
No 85
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.32 E-value=1.8e-12 Score=103.46 Aligned_cols=67 Identities=33% Similarity=0.675 Sum_probs=59.2
Q ss_pred ceEEEeCcchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccce
Q 010469 435 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 503 (510)
Q Consensus 435 ~~~~l~~~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~ 503 (510)
.+..++..+|++.+.+++++++|.|||+||++|+.+.|.+.++++.+.+ .+.|+++|++.+.....+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~ 68 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKG--KVKVGSVDCQKYESLCQQ 68 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEECCchHHHHHH
Confidence 3567889999999988888999999999999999999999999999875 799999999987765444
No 86
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.32 E-value=1.8e-12 Score=102.36 Aligned_cols=64 Identities=20% Similarity=0.336 Sum_probs=54.1
Q ss_pred CcchhhHhhc-cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccceeEeee
Q 010469 441 GNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKVIFDV 508 (510)
Q Consensus 441 ~~~f~~~v~~-~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~~~~~v 508 (510)
+++|++.+.. ++++++|.|||+||++|+.|.|.+.+++..+.+ .+.|+++|++.+...... |||
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~--~v~f~kVDvD~~~~la~~--~~V 66 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN--FAVIYLVDIDEVPDFNKM--YEL 66 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC--ceEEEEEECCCCHHHHHH--cCC
Confidence 3567887764 567999999999999999999999999999876 689999999988766655 554
No 87
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=99.30 E-value=2.9e-11 Score=99.39 Aligned_cols=112 Identities=19% Similarity=0.257 Sum_probs=90.0
Q ss_pred CceeecCCCch-hhhccCCccceEEEEEec------cchhhHHHHHHHHHHhccCc-eEEEEEEcCCcccccchhhhcCC
Q 010469 306 PLVTIFTRENA-PSVFESPIKNQLLLFAVS------NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKPVSEYFGI 377 (510)
Q Consensus 306 p~~~~lt~~~~-~~~~~~~~~~~~v~~~~~------~~~~~~~~~~~~~A~~~~~~-~~f~~vd~~~~~~~~~l~~~~gi 377 (510)
|-+.+++.++. ...+.. ...+++.|.++ +..+.+.+.++++|++|+++ +.|+|+|... +..+.+.||+
T Consensus 2 ~~~~~l~~~~~~~~~C~~-~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~---~~~~~~~fgl 77 (130)
T cd02983 2 PEIIELTSEDVFEETCEE-KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGA---QLDLEEALNI 77 (130)
T ss_pred CceEEecCHHHHHhhccC-CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcc---cHHHHHHcCC
Confidence 44666776655 435543 35777777764 24677899999999999999 9999999877 3358899999
Q ss_pred CCCCCcEEEEeeCCCCCccc-CCCCCCHHHHHHHHHHhhcCccccc
Q 010469 378 TGEAPKVLAYTGNDDAKKHI-LDGELTLDKIKTFGEDFLEGKLKPF 422 (510)
Q Consensus 378 ~~~~~P~~~i~~~~~~~~y~-~~~~~t~e~i~~Fi~~~~~Gkl~~~ 422 (510)
+....|++++++.+++ +|. +.+++|.++|.+|++++++|++...
T Consensus 78 ~~~~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~Gkl~~~ 122 (130)
T cd02983 78 GGFGYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSYGRGPTL 122 (130)
T ss_pred CccCCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHcCCcccc
Confidence 8878999999988655 887 8899999999999999999999653
No 88
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.29 E-value=1.5e-11 Score=102.59 Aligned_cols=76 Identities=26% Similarity=0.500 Sum_probs=59.8
Q ss_pred CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCccc-------------------------HHHHHhC
Q 010469 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE-------------------------NELAHEY 163 (510)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-------------------------~~~~~~~ 163 (510)
++++++|+||++||++|+.++|.+.++++++++...++.++.|+.+.. ..+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 579999999999999999999999999999987423566666665543 2456679
Q ss_pred CCCcccEEEEEe-CCeeeeecC
Q 010469 164 DVQGFPTIYFFV-DGQHKAYNG 184 (510)
Q Consensus 164 ~v~~~P~~~~~~-~g~~~~y~g 184 (510)
+|.++|++++++ +|+.....|
T Consensus 96 ~v~~iPt~~lid~~G~iv~~~~ 117 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVTTNA 117 (132)
T ss_pred CCCCCCEEEEECCCCCEEchhH
Confidence 999999999996 666554433
No 89
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.29 E-value=2.6e-11 Score=94.92 Aligned_cols=68 Identities=29% Similarity=0.626 Sum_probs=55.8
Q ss_pred CCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccH-------------------------HHHHhCC
Q 010469 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN-------------------------ELAHEYD 164 (510)
Q Consensus 110 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-------------------------~~~~~~~ 164 (510)
||+++|+|||+||++|+++.|.+.++.+++++ +.++.++.|.+++.. .+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence 58999999999999999999999999999994 347888888877542 5677899
Q ss_pred CCcccEEEEEe-CCe
Q 010469 165 VQGFPTIYFFV-DGQ 178 (510)
Q Consensus 165 v~~~P~~~~~~-~g~ 178 (510)
|.++|++++++ +|+
T Consensus 80 i~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 80 INGIPTLVLLDPDGK 94 (95)
T ss_dssp -TSSSEEEEEETTSB
T ss_pred CCcCCEEEEECCCCC
Confidence 99999999997 553
No 90
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.28 E-value=5.6e-11 Score=102.66 Aligned_cols=82 Identities=13% Similarity=0.095 Sum_probs=62.7
Q ss_pred hCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEE------EEEeCccc-------------------------
Q 010469 108 ENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVL------AKVDATEE------------------------- 156 (510)
Q Consensus 108 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~------~~vd~~~~------------------------- 156 (510)
-.+|+++|+|||+||++|+.++|.+.+++++ ++.+ ..||.++.
T Consensus 57 l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~------~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vl 130 (184)
T TIGR01626 57 LAGKVRVVHHIAGRTSAKEXNASLIDAIKAA------KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVV 130 (184)
T ss_pred cCCCEEEEEEEecCCChhhccchHHHHHHHc------CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEE
Confidence 3589999999999999999999999999542 2444 55565442
Q ss_pred ----HHHHHhCCCCcccEE-EEEe-CC-eeeeecCCCCHHHHHHHH
Q 010469 157 ----NELAHEYDVQGFPTI-YFFV-DG-QHKAYNGGRTKDAIVTWI 195 (510)
Q Consensus 157 ----~~~~~~~~v~~~P~~-~~~~-~g-~~~~y~g~~~~~~l~~~i 195 (510)
..+...+++.++|++ ++++ +| ....+.|..+.+.+.+.+
T Consensus 131 lD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 131 LDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred ECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 234567899999988 6775 77 556899999988887743
No 91
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.28 E-value=1e-11 Score=99.13 Aligned_cols=67 Identities=61% Similarity=1.125 Sum_probs=60.2
Q ss_pred ceEEEeCcchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCcc
Q 010469 435 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 501 (510)
Q Consensus 435 ~~~~l~~~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~ 501 (510)
+|..+++.+|++.+.+++++++|+||++||++|+.+.|.+.++++.+++..++.|+++|++.|+...
T Consensus 1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~ 67 (104)
T cd02995 1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPS 67 (104)
T ss_pred CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhh
Confidence 3678999999999988889999999999999999999999999999876567999999999986543
No 92
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.27 E-value=2.5e-11 Score=100.72 Aligned_cols=78 Identities=21% Similarity=0.391 Sum_probs=62.3
Q ss_pred CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEe-----------------------CcccHHHHHhCCC
Q 010469 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVD-----------------------ATEENELAHEYDV 165 (510)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd-----------------------~~~~~~~~~~~~v 165 (510)
++++++|+||++||++|+++.|.+.++++.+ ++.++.|+ ++....+++.|++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-----~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v 98 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG-----RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGV 98 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-----CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCC
Confidence 5789999999999999999999999998764 25555554 3345578888999
Q ss_pred CcccEEEEEe-CCe-eeeecCCCCHHHH
Q 010469 166 QGFPTIYFFV-DGQ-HKAYNGGRTKDAI 191 (510)
Q Consensus 166 ~~~P~~~~~~-~g~-~~~y~g~~~~~~l 191 (510)
.++|+++++. +|+ ...+.|..+.+.|
T Consensus 99 ~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 99 YGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CCCCeEEEECCCceEEEEEeccCChHhc
Confidence 9999888885 784 5688898887654
No 93
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.27 E-value=2.9e-11 Score=109.78 Aligned_cols=95 Identities=18% Similarity=0.253 Sum_probs=77.4
Q ss_pred EeChhcHHHHHhCCCe-EEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEe
Q 010469 97 VLKERNFSDVIENNKF-VMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFV 175 (510)
Q Consensus 97 ~l~~~~~~~~~~~~~~-~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~ 175 (510)
.|+.++.+.+-...++ .++.||++||++|+...|.+++++... + .+.+..+|.+++++++++++|.++||+++++
T Consensus 119 ~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-~---~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~ 194 (215)
T TIGR02187 119 GLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-D---KILGEMIEANENPDLAEKYGVMSVPKIVINK 194 (215)
T ss_pred CCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-C---ceEEEEEeCCCCHHHHHHhCCccCCEEEEec
Confidence 4445555544443444 455599999999999999999988763 2 5889999999999999999999999999998
Q ss_pred CCeeeeecCCCCHHHHHHHHHH
Q 010469 176 DGQHKAYNGGRTKDAIVTWIKK 197 (510)
Q Consensus 176 ~g~~~~y~g~~~~~~l~~~i~~ 197 (510)
+|.. +.|....+.+.+|+.+
T Consensus 195 ~~~~--~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 195 GVEE--FVGAYPEEQFLEYILS 214 (215)
T ss_pred CCEE--EECCCCHHHHHHHHHh
Confidence 8753 8899999999999875
No 94
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.26 E-value=7.1e-12 Score=101.01 Aligned_cols=71 Identities=35% Similarity=0.703 Sum_probs=60.1
Q ss_pred eEEEeCcchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccceeEeee
Q 010469 436 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKVIFDV 508 (510)
Q Consensus 436 ~~~l~~~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~~~~~v 508 (510)
+..++..+|++.+.+++++++|.||++||++|+.+.|.+.++++.+.+ .+.|+.+|++.++.+....+|+|
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~--~~~~~~v~~~~~~~~~~~~~~~i 72 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG--LVQVAAVDCDEDKNKPLCGKYGV 72 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC--CceEEEEecCccccHHHHHHcCC
Confidence 567899999999988889999999999999999999999999999876 78999999998544443333554
No 95
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.26 E-value=7e-12 Score=101.24 Aligned_cols=74 Identities=35% Similarity=0.647 Sum_probs=60.7
Q ss_pred ceEEEeCcchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-CcEEEEEEeCCCCcCccceeEeee
Q 010469 435 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEHHRAKVIFDV 508 (510)
Q Consensus 435 ~~~~l~~~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~-~~~~~~~id~~~n~~~~~~~~~~v 508 (510)
++..+++.+|++.+.+..++++|.||++||++|+.+.|.|.++++.++.. ..+.|+.+|++.....+...+|+|
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i 76 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGV 76 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCC
Confidence 56789999999999888889999999999999999999999999988653 359999999876544444333554
No 96
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.26 E-value=3.2e-11 Score=89.43 Aligned_cols=73 Identities=23% Similarity=0.345 Sum_probs=59.8
Q ss_pred EEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCCeeeeecCC-CCHHHHH
Q 010469 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQHKAYNGG-RTKDAIV 192 (510)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~y~g~-~~~~~l~ 192 (510)
.|.||++||++|+...|.++++++++.. .+.++.|| +.+.+.++++.++|++++ +|+.. +.|. .+.+.+.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~---~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~-~~G~~~~~~~l~ 72 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI---DAEFEKVT---DMNEILEAGVTATPGVAV--DGELV-IMGKIPSKEEIK 72 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC---CeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE-EEeccCCHHHHH
Confidence 3789999999999999999999998865 68888887 344578899999999999 88655 7775 4557777
Q ss_pred HHH
Q 010469 193 TWI 195 (510)
Q Consensus 193 ~~i 195 (510)
+++
T Consensus 73 ~~l 75 (76)
T TIGR00412 73 EIL 75 (76)
T ss_pred HHh
Confidence 765
No 97
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=5.4e-12 Score=113.88 Aligned_cols=72 Identities=35% Similarity=0.683 Sum_probs=63.3
Q ss_pred CceEEEeCcchhhHhhccC--CcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccceeEeeee
Q 010469 434 GDVKIVVGNNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKVIFDVN 509 (510)
Q Consensus 434 ~~~~~l~~~~f~~~v~~~~--~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~~~~~v~ 509 (510)
..|.++|..||.+.|..++ +||||+||+|||++|+.+.|.+++++..+++ ++.++++||+.+...... ||||
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G--~f~LakvN~D~~p~vAaq--fgiq 96 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG--KFKLAKVNCDAEPMVAAQ--FGVQ 96 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC--ceEEEEecCCcchhHHHH--hCcC
Confidence 4489999999999886543 5999999999999999999999999999998 999999999977766655 7775
No 98
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.24 E-value=1.1e-11 Score=99.53 Aligned_cols=72 Identities=22% Similarity=0.539 Sum_probs=58.9
Q ss_pred ceEEEeCcchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCC----CcEEEEEEeCCCCcCccceeEeeee
Q 010469 435 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV----DSIVIAKMDGTTNEHHRAKVIFDVN 509 (510)
Q Consensus 435 ~~~~l~~~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~----~~~~~~~id~~~n~~~~~~~~~~v~ 509 (510)
.+..+++++|++.+ +.+++++|.||||||++|+++.|.+.++++.+++. .++.|+++|++.++....+ |||+
T Consensus 2 ~v~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~--~~v~ 77 (108)
T cd02996 2 EIVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADR--YRIN 77 (108)
T ss_pred ceEEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHh--CCCC
Confidence 46778999999977 56789999999999999999999999999887431 2599999999988655444 5553
No 99
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.23 E-value=8.6e-11 Score=109.50 Aligned_cols=89 Identities=19% Similarity=0.232 Sum_probs=70.6
Q ss_pred CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcc---------cHHHHHhCCCCcccEEEEEeC-C-
Q 010469 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE---------ENELAHEYDVQGFPTIYFFVD-G- 177 (510)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~---------~~~~~~~~~v~~~P~~~~~~~-g- 177 (510)
.++++||+||++||++|+.++|.+.++++++.- .|..+.+|... +..+++++||.++|+++++++ |
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~---~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~ 241 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGI---EVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPN 241 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcCc---EEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCC
Confidence 368999999999999999999999999998732 34444444321 356889999999999999985 5
Q ss_pred eee-eecCCCCHHHHHHHHHHHcC
Q 010469 178 QHK-AYNGGRTKDAIVTWIKKKIG 200 (510)
Q Consensus 178 ~~~-~y~g~~~~~~l~~~i~~~~~ 200 (510)
... ...|..+.+.|.+.+.....
T Consensus 242 ~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 242 QFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHhc
Confidence 333 46699999999999887654
No 100
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.22 E-value=2.2e-11 Score=102.52 Aligned_cols=81 Identities=19% Similarity=0.390 Sum_probs=64.9
Q ss_pred cCCCCCCCCCCceEEEeCcchhhHhhcc-CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccc
Q 010469 424 KSDPIPETNDGDVKIVVGNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA 502 (510)
Q Consensus 424 kSe~~p~~~~~~~~~l~~~~f~~~v~~~-~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~ 502 (510)
.+++.+.. ...+.+++.++|++.+... +++++|+||++||++|+.+.|.++++++.+.+ .++.|+++|++++.....
T Consensus 19 ~~~~~~~~-~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~-~~v~f~~VDvd~~~~la~ 96 (152)
T cd02962 19 APQPLYMG-PEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN-NNLKFGKIDIGRFPNVAE 96 (152)
T ss_pred hCCCccCC-CCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc-CCeEEEEEECCCCHHHHH
Confidence 44554443 4678889999999988544 57899999999999999999999999998864 369999999998876554
Q ss_pred eeEeee
Q 010469 503 KVIFDV 508 (510)
Q Consensus 503 ~~~~~v 508 (510)
+ |+|
T Consensus 97 ~--~~V 100 (152)
T cd02962 97 K--FRV 100 (152)
T ss_pred H--cCc
Confidence 4 444
No 101
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.22 E-value=8.3e-11 Score=95.44 Aligned_cols=78 Identities=22% Similarity=0.356 Sum_probs=62.4
Q ss_pred ChhcHHHHHhCCCeEEEEEECCCChHHhhhhHH-H--HHHHHHHhhcCCCeEEEEEeCcccHHHHH--------hCCCCc
Q 010469 99 KERNFSDVIENNKFVMVEFYAPWCGHCQALAPE-Y--AAAATELKSANESVVLAKVDATEENELAH--------EYDVQG 167 (510)
Q Consensus 99 ~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~-~--~~~~~~~~~~~~~v~~~~vd~~~~~~~~~--------~~~v~~ 167 (510)
+++.+....+++|+++|.|+|+||++|+.+.+. | .++++.+.. ++.++.+|.++.+++++ .+++.+
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~---~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G 80 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE---NFVPIKVDREERPDVDKIYMNAAQAMTGQGG 80 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC---CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCC
Confidence 356677888899999999999999999999873 3 245655555 69999999988887765 358999
Q ss_pred ccEEEEEe-CCee
Q 010469 168 FPTIYFFV-DGQH 179 (510)
Q Consensus 168 ~P~~~~~~-~g~~ 179 (510)
+|+++++. +|+.
T Consensus 81 ~Pt~vfl~~~G~~ 93 (124)
T cd02955 81 WPLNVFLTPDLKP 93 (124)
T ss_pred CCEEEEECCCCCE
Confidence 99999996 6744
No 102
>PHA02125 thioredoxin-like protein
Probab=99.22 E-value=9.8e-11 Score=86.75 Aligned_cols=68 Identities=24% Similarity=0.495 Sum_probs=54.7
Q ss_pred EEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCCee-eeecCC-CCHHHH
Q 010469 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQH-KAYNGG-RTKDAI 191 (510)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~-~~y~g~-~~~~~l 191 (510)
+++||++||++|+.+.|.|.++. +.++.||+++..+++++|+|.++||++ +|+. .++.|. .+..+|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l 69 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAEL 69 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHH
Confidence 78999999999999999987542 568899999999999999999999987 5643 477774 333555
Q ss_pred HH
Q 010469 192 VT 193 (510)
Q Consensus 192 ~~ 193 (510)
.+
T Consensus 70 ~~ 71 (75)
T PHA02125 70 KE 71 (75)
T ss_pred HH
Confidence 44
No 103
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.22 E-value=1.4e-11 Score=99.05 Aligned_cols=75 Identities=13% Similarity=0.086 Sum_probs=62.8
Q ss_pred CCceEEEeCcchhhHhhccCCcEEEEEeCCCChh--hh--hhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccceeEeee
Q 010469 433 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGH--CQ--AFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKVIFDV 508 (510)
Q Consensus 433 ~~~~~~l~~~~f~~~v~~~~~~vlv~f~~~~c~~--C~--~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~~~~~v 508 (510)
...+..++.+||++.|.+++.++|++||++||++ |+ .+.|.+.++|..+-...++.|+++|++.|...+.+ |||
T Consensus 8 ~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~--~~I 85 (120)
T cd03065 8 KDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKK--LGL 85 (120)
T ss_pred CcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHH--cCC
Confidence 4567889999999999999999999999999987 99 89999999988772113799999999988766665 665
Q ss_pred e
Q 010469 509 N 509 (510)
Q Consensus 509 ~ 509 (510)
+
T Consensus 86 ~ 86 (120)
T cd03065 86 D 86 (120)
T ss_pred c
Confidence 4
No 104
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.21 E-value=5.6e-11 Score=96.22 Aligned_cols=84 Identities=31% Similarity=0.538 Sum_probs=62.1
Q ss_pred CCCeEEEEEECCCChHHhhhhHHHHHHHH---HHhhcCCCeEEEEEeCccc--------------------HHHHHhCCC
Q 010469 109 NNKFVMVEFYAPWCGHCQALAPEYAAAAT---ELKSANESVVLAKVDATEE--------------------NELAHEYDV 165 (510)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~---~~~~~~~~v~~~~vd~~~~--------------------~~~~~~~~v 165 (510)
++++++|.||++||++|+.+.+.+.+..+ .+++ ++.++.++++.. .++.+.++|
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD---DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV 80 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC---ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc---CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence 57899999999999999999999886543 3333 577777777643 358889999
Q ss_pred CcccEEEEEe-CCe-eeeecCCCCHHHHHHHH
Q 010469 166 QGFPTIYFFV-DGQ-HKAYNGGRTKDAIVTWI 195 (510)
Q Consensus 166 ~~~P~~~~~~-~g~-~~~y~g~~~~~~l~~~i 195 (510)
.++||+++++ +|+ ...+.|..+.+++.+++
T Consensus 81 ~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp -SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred CccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 9999999996 784 55789999999998775
No 105
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.19 E-value=1.1e-10 Score=96.38 Aligned_cols=92 Identities=21% Similarity=0.312 Sum_probs=69.5
Q ss_pred EeChhcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEe---------------------Ccc
Q 010469 97 VLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVD---------------------ATE 155 (510)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd---------------------~~~ 155 (510)
.++++.+......+++++|+||++||++|+.+.|.+.++++.+ .+..+.+| ++.
T Consensus 7 ~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~-----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (123)
T cd03011 7 TLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADY-----PVVSVALRSGDDGAVARFMQKKGYGFPVINDP 81 (123)
T ss_pred cCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhC-----CEEEEEccCCCHHHHHHHHHHcCCCccEEECC
Confidence 3455555555556789999999999999999999999998763 23222222 134
Q ss_pred cHHHHHhCCCCcccEEEEEeC-CeeeeecCCCCHHHHHH
Q 010469 156 ENELAHEYDVQGFPTIYFFVD-GQHKAYNGGRTKDAIVT 193 (510)
Q Consensus 156 ~~~~~~~~~v~~~P~~~~~~~-g~~~~y~g~~~~~~l~~ 193 (510)
+..+++.|+|.++|+++++.+ |....+.|..+.+.|.+
T Consensus 82 ~~~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~ 120 (123)
T cd03011 82 DGVISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRL 120 (123)
T ss_pred CcHHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHh
Confidence 467999999999999999974 45567889999888865
No 106
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.19 E-value=2.5e-11 Score=96.68 Aligned_cols=66 Identities=35% Similarity=0.706 Sum_probs=59.0
Q ss_pred eEEEeCcchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccce
Q 010469 436 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 503 (510)
Q Consensus 436 ~~~l~~~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~ 503 (510)
|..++.++|++.+.++.++++|+||++||++|+.+.|.+.++++.+.+ ++.|+.+|++.+.....+
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~ 66 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFAKVDCDENKELCKK 66 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTSHHHHHH
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc--ccccchhhhhccchhhhc
Confidence 467899999999988789999999999999999999999999999987 899999999987544433
No 107
>PRK09381 trxA thioredoxin; Provisional
Probab=99.19 E-value=4.3e-11 Score=96.33 Aligned_cols=68 Identities=25% Similarity=0.606 Sum_probs=59.7
Q ss_pred CceEEEeCcchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccce
Q 010469 434 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 503 (510)
Q Consensus 434 ~~~~~l~~~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~ 503 (510)
..+..+++.+|.+.+.+.+++++|+||++||++|+.+.|.++++++.+.+ ++.|+.+|++.+......
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~--~~~~~~vd~~~~~~~~~~ 70 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPK 70 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC--CcEEEEEECCCChhHHHh
Confidence 45778899999998877788999999999999999999999999999976 699999999987665443
No 108
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.18 E-value=1.2e-10 Score=120.37 Aligned_cols=96 Identities=27% Similarity=0.498 Sum_probs=78.5
Q ss_pred ChhcHHHHH----hCCCeEEEEEECCCChHHhhhhHHH---HHHHHHHhhcCCCeEEEEEeCccc----HHHHHhCCCCc
Q 010469 99 KERNFSDVI----ENNKFVMVEFYAPWCGHCQALAPEY---AAAATELKSANESVVLAKVDATEE----NELAHEYDVQG 167 (510)
Q Consensus 99 ~~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~v~~~~vd~~~~----~~~~~~~~v~~ 167 (510)
+.+++++.+ .++|+++|+|||+||++|+.+.+.. .++.+.++ ++.++.+|++++ .+++++|++.+
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~----~~~~v~vDvt~~~~~~~~l~~~~~v~g 534 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA----DTVLLQADVTANNAEDVALLKHYNVLG 534 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc----CCEEEEEECCCCChhhHHHHHHcCCCC
Confidence 356666655 3478999999999999999998875 56666664 388999998753 67899999999
Q ss_pred ccEEEEEe-CCee---eeecCCCCHHHHHHHHHHH
Q 010469 168 FPTIYFFV-DGQH---KAYNGGRTKDAIVTWIKKK 198 (510)
Q Consensus 168 ~P~~~~~~-~g~~---~~y~g~~~~~~l~~~i~~~ 198 (510)
+|++++|+ +|+. .++.|..+.+.+.+++++.
T Consensus 535 ~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 535 LPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 99999997 7754 5788999999999999874
No 109
>PHA02278 thioredoxin-like protein
Probab=99.16 E-value=2.7e-11 Score=95.18 Aligned_cols=54 Identities=15% Similarity=0.302 Sum_probs=45.5
Q ss_pred cchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCc
Q 010469 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 498 (510)
Q Consensus 442 ~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~ 498 (510)
.+|.+.+ ..+++++|+|||+||++|+.|.|.+.++++.+.. .+.|+++|++.++
T Consensus 5 ~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~--~~~~~~vdvd~~~ 58 (103)
T PHA02278 5 VDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDI--KKPILTLNLDAED 58 (103)
T ss_pred HHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC--CceEEEEECCccc
Confidence 4677777 4678999999999999999999999999987544 4678999999874
No 110
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.16 E-value=2.5e-10 Score=101.75 Aligned_cols=104 Identities=10% Similarity=0.139 Sum_probs=73.3
Q ss_pred EEeChhcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcc-------c----HHHHHhCC
Q 010469 96 VVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-------E----NELAHEYD 164 (510)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-------~----~~~~~~~~ 164 (510)
..++++.+...--.+++++|+|||+||++|++++|.|.++++++++ .++.++.|+|++ . ..++++++
T Consensus 25 ~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~--~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~ 102 (199)
T PTZ00056 25 KTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNP--LGLEILAFPTSQFLNQEFPNTKDIRKFNDKNK 102 (199)
T ss_pred ECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhc--CceEEEEecchhccCCCCCCHHHHHHHHHHcC
Confidence 3344443332222578999999999999999999999999999987 358888998741 1 23344443
Q ss_pred CC------------------------------------ccc---EEEEE-eCC-eeeeecCCCCHHHHHHHHHHHcCC
Q 010469 165 VQ------------------------------------GFP---TIYFF-VDG-QHKAYNGGRTKDAIVTWIKKKIGP 201 (510)
Q Consensus 165 v~------------------------------------~~P---~~~~~-~~g-~~~~y~g~~~~~~l~~~i~~~~~~ 201 (510)
+. .+| +++++ ++| ...++.|..+.+.+...|.+.+..
T Consensus 103 ~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~ 180 (199)
T PTZ00056 103 IKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGV 180 (199)
T ss_pred CCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 21 122 57777 488 446788888889999988887744
No 111
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.15 E-value=5.7e-09 Score=92.71 Aligned_cols=167 Identities=25% Similarity=0.402 Sum_probs=127.6
Q ss_pred hhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCC--eeeeecCC-CCHHHHHHHHHHHcCCCc
Q 010469 127 ALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG--QHKAYNGG-RTKDAIVTWIKKKIGPGI 203 (510)
Q Consensus 127 ~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g--~~~~y~g~-~~~~~l~~~i~~~~~~~~ 203 (510)
.+...|.++|+.+.+ .+.|+.+. ++++++++++.. |++++|+++ ....|.|. .+.+.|.+||....-|.+
T Consensus 7 ~~~~~f~~~A~~~~~---~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v 79 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKG---DYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLV 79 (184)
T ss_dssp HHHHHHHHHHHHHTT---TSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSC
T ss_pred HHHHHHHHHHHhCcC---CcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhccccc
Confidence 356789999999987 68999887 678999999998 999999974 67899998 899999999999999999
Q ss_pred ccccchhHHHHhccCCCeEEEEEecCCCCcc----hHHHHHhc-cccCceeEEEcCC---hhHHHhhCCCCCCCCCeEEE
Q 010469 204 YNITTLDEAERVLTSETKVVLGYLNSLVGSE----SEVLADAS-RLEDDVNFYQTTN---PDVAKIFHLDSKVNRPALVM 275 (510)
Q Consensus 204 ~~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~-~~~~~~~f~~~~~---~~l~~~~~~~~~~~~p~l~~ 275 (510)
.+++. +.+..+.......++.++....... ...+..+| ++++.+.|..+.. +.+.+.+|++. ...|++++
T Consensus 80 ~~~t~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~-~~~P~~vi 157 (184)
T PF13848_consen 80 PELTP-ENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDE-DDLPALVI 157 (184)
T ss_dssp EEEST-THHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTT-SSSSEEEE
T ss_pred cccch-hhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCC-ccCCEEEE
Confidence 88875 6888888887664444444322222 23344555 6788888887643 47888999885 45799999
Q ss_pred eccCCCceeeccCCCCCHHHHHHHHHh
Q 010469 276 VKKETEKISYFADGKFDKSTIADFVFS 302 (510)
Q Consensus 276 ~~~~~~~~~~y~~g~~~~~~i~~fi~~ 302 (510)
+....+....+..++++.+.|.+|++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 158 FDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp EETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred EECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 996665543323889999999999873
No 112
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.15 E-value=6.6e-11 Score=93.80 Aligned_cols=65 Identities=26% Similarity=0.556 Sum_probs=53.7
Q ss_pred ceEEEeCcchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccce
Q 010469 435 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 503 (510)
Q Consensus 435 ~~~~l~~~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~ 503 (510)
.+..++..+|++.+. + .++|.|||+||++|+.+.|.|.++++.++. .++.|+++|++.+.....+
T Consensus 2 ~v~~l~~~~f~~~~~--~-~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~~~~~~~~~~ 66 (101)
T cd02994 2 NVVELTDSNWTLVLE--G-EWMIEFYAPWCPACQQLQPEWEEFADWSDD-LGINVAKVDVTQEPGLSGR 66 (101)
T ss_pred ceEEcChhhHHHHhC--C-CEEEEEECCCCHHHHHHhHHHHHHHHhhcc-CCeEEEEEEccCCHhHHHH
Confidence 467899999998763 2 378999999999999999999999997753 4699999999887654443
No 113
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.15 E-value=6.8e-11 Score=94.97 Aligned_cols=62 Identities=29% Similarity=0.670 Sum_probs=54.5
Q ss_pred ceEEEeCcchhhHhh--ccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCC
Q 010469 435 DVKIVVGNNFDEIVL--DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497 (510)
Q Consensus 435 ~~~~l~~~~f~~~v~--~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n 497 (510)
.|..++..+|+..+. +.+++++|.||++||++|+.+.|.+.++++.+++ .++.++.+|++.+
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~-~~~~~~~vd~d~~ 65 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG-SNVKVAKFNADGE 65 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc-CCeEEEEEECCcc
Confidence 467788999999885 4578999999999999999999999999999974 4699999999874
No 114
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.15 E-value=5.6e-11 Score=93.27 Aligned_cols=60 Identities=20% Similarity=0.450 Sum_probs=52.2
Q ss_pred cchhhHhhcc-CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccce
Q 010469 442 NNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 503 (510)
Q Consensus 442 ~~f~~~v~~~-~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~ 503 (510)
++|++.+.++ +++++|+||++||++|+.+.|.+.++++.+.+ .+.++++|++.+.....+
T Consensus 1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~l~~~ 61 (96)
T cd02956 1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG--QFVLAKVNCDAQPQIAQQ 61 (96)
T ss_pred CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC--cEEEEEEeccCCHHHHHH
Confidence 4788888765 68999999999999999999999999999976 699999999988765544
No 115
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.14 E-value=4.3e-11 Score=98.45 Aligned_cols=66 Identities=18% Similarity=0.327 Sum_probs=55.6
Q ss_pred eCcchhhHhhcc-CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccceeEeeee
Q 010469 440 VGNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKVIFDVN 509 (510)
Q Consensus 440 ~~~~f~~~v~~~-~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~~~~~v~ 509 (510)
+...|++.+... +++|+|.|||+||++|+.|.|.++++|+.+++ .+.|+++|+++++..+.. |+|+
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~--~~~~~kVDVDe~~dla~~--y~I~ 76 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN--FAVIYLVDITEVPDFNTM--YELY 76 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC--ceEEEEEECCCCHHHHHH--cCcc
Confidence 356888888744 67999999999999999999999999999976 688999999988876665 4543
No 116
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.14 E-value=4.7e-11 Score=96.51 Aligned_cols=62 Identities=21% Similarity=0.382 Sum_probs=55.3
Q ss_pred CCceEEEeCcchhhHhhccC--CcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCC
Q 010469 433 DGDVKIVVGNNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497 (510)
Q Consensus 433 ~~~~~~l~~~~f~~~v~~~~--~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n 497 (510)
.|.+..++.++|.+.+.+.+ ++++|+||+|||++|+.+.|.++++++.+. ++.|+++|++.+
T Consensus 3 ~g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~---~v~f~~vd~~~~ 66 (113)
T cd02957 3 FGEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP---ETKFVKINAEKA 66 (113)
T ss_pred CceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC---CcEEEEEEchhh
Confidence 46678899999999987663 799999999999999999999999999886 489999999987
No 117
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.13 E-value=5.2e-10 Score=101.15 Aligned_cols=104 Identities=13% Similarity=0.142 Sum_probs=76.2
Q ss_pred cEEeChhcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcc-------c----HHHH-Hh
Q 010469 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-------E----NELA-HE 162 (510)
Q Consensus 95 v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-------~----~~~~-~~ 162 (510)
+..++++.+...-..+++++|+||++||++|+.++|.|.++++++++. ++.++.|+|+. . .+++ ++
T Consensus 84 l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~--Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~ 161 (236)
T PLN02399 84 VKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEIKQFACTR 161 (236)
T ss_pred EECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC--CcEEEEEecccccccCCCCHHHHHHHHHHh
Confidence 444555544432235789999999999999999999999999999873 58888888741 1 1222 22
Q ss_pred CC----------------------------------CCcccEEEEEe-CC-eeeeecCCCCHHHHHHHHHHHcC
Q 010469 163 YD----------------------------------VQGFPTIYFFV-DG-QHKAYNGGRTKDAIVTWIKKKIG 200 (510)
Q Consensus 163 ~~----------------------------------v~~~P~~~~~~-~g-~~~~y~g~~~~~~l~~~i~~~~~ 200 (510)
++ +...|++++++ +| ...+|.|..+.+.+.+.|++.+.
T Consensus 162 ~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 162 FKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred cCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 21 12358899995 77 55689999999999999988763
No 118
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.12 E-value=7.4e-11 Score=93.93 Aligned_cols=66 Identities=35% Similarity=0.740 Sum_probs=58.0
Q ss_pred eEEEeCcchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccce
Q 010469 436 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 503 (510)
Q Consensus 436 ~~~l~~~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~ 503 (510)
+..++.++|.+.+.+++++++|+||++||++|+.+.|.|.++++.+.+ .+.|+.+|++.+.....+
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~id~~~~~~~~~~ 67 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG--IVKVGAVDADVHQSLAQQ 67 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CceEEEEECcchHHHHHH
Confidence 567889999999888778899999999999999999999999999876 799999999987655443
No 119
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.12 E-value=2e-10 Score=93.27 Aligned_cols=73 Identities=22% Similarity=0.342 Sum_probs=50.9
Q ss_pred CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEE-eCc--ccH-----------------HHHHhCCCCcc
Q 010469 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKV-DAT--EEN-----------------ELAHEYDVQGF 168 (510)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~v-d~~--~~~-----------------~~~~~~~v~~~ 168 (510)
++++++|+||++||++|+.+.|.++++++.+++ ++.++.+ |.+ +.. .+.+.|++.++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 96 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD---WLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKL 96 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC---CcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCc
Confidence 478999999999999999999999999888755 4555544 211 111 34556677778
Q ss_pred cEEEEEeCCeeeeecC
Q 010469 169 PTIYFFVDGQHKAYNG 184 (510)
Q Consensus 169 P~~~~~~~g~~~~y~g 184 (510)
|++++++....+.|.|
T Consensus 97 P~~~vid~~G~v~~~~ 112 (114)
T cd02967 97 PYAVLLDEAGVIAAKG 112 (114)
T ss_pred CeEEEECCCCeEEecc
Confidence 8888886333344444
No 120
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.11 E-value=1.1e-10 Score=92.55 Aligned_cols=55 Identities=24% Similarity=0.347 Sum_probs=48.4
Q ss_pred CcchhhHhhcc-CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCc
Q 010469 441 GNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 498 (510)
Q Consensus 441 ~~~f~~~v~~~-~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~ 498 (510)
.++|++.+.+. +++|||.|||+||++|+.+.|.+.++++.+. ++.|+++|++.++
T Consensus 3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~---~v~~~~vd~d~~~ 58 (103)
T cd02985 3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN---DVVFLLVNGDEND 58 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC---CCEEEEEECCCCh
Confidence 46788888655 7899999999999999999999999999883 6899999998874
No 121
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.11 E-value=6.1e-11 Score=95.45 Aligned_cols=65 Identities=18% Similarity=0.388 Sum_probs=53.8
Q ss_pred EEeCcchhhHhhc--cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccce
Q 010469 438 IVVGNNFDEIVLD--ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 503 (510)
Q Consensus 438 ~l~~~~f~~~v~~--~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~ 503 (510)
.++.++|.+.+.. .+++++|+||||||++|+.+.|.+.++++.+++ .++.++++|++.+.....+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~d~~~~l~~~ 74 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP-LGVGIATVNAGHERRLARK 74 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh-cCceEEEEeccccHHHHHH
Confidence 4677888876653 568999999999999999999999999999975 3689999999987655443
No 122
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.10 E-value=3.8e-10 Score=124.60 Aligned_cols=90 Identities=17% Similarity=0.363 Sum_probs=75.3
Q ss_pred CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeC---------------------------cccHHHHH
Q 010469 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDA---------------------------TEENELAH 161 (510)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~---------------------------~~~~~~~~ 161 (510)
++++++|+|||+||++|+++.|.|+++++++++ .++.++.|.+ +.+..+.+
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~--~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~ 496 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKD--QPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWR 496 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCC--CCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHH
Confidence 589999999999999999999999999999976 3477777742 12335677
Q ss_pred hCCCCcccEEEEE-eCCe-eeeecCCCCHHHHHHHHHHHcC
Q 010469 162 EYDVQGFPTIYFF-VDGQ-HKAYNGGRTKDAIVTWIKKKIG 200 (510)
Q Consensus 162 ~~~v~~~P~~~~~-~~g~-~~~y~g~~~~~~l~~~i~~~~~ 200 (510)
+|+|.++|++++| ++|+ ..++.|....+.+.+++...+.
T Consensus 497 ~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 497 ELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred hcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 8999999999999 4884 4578999999999999998764
No 123
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.10 E-value=4.5e-10 Score=91.22 Aligned_cols=74 Identities=38% Similarity=0.724 Sum_probs=63.3
Q ss_pred CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCccc-----------------------HHHHHhCCC
Q 010469 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE-----------------------NELAHEYDV 165 (510)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-----------------------~~~~~~~~v 165 (510)
.+++++|.||++||++|+...+.+.++.+++.. .++.++.|+++.+ ..+++.|++
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKD--DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGV 95 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCC--CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCc
Confidence 478999999999999999999999999999864 3689999998875 678899999
Q ss_pred CcccEEEEEe-CC-eeeeecC
Q 010469 166 QGFPTIYFFV-DG-QHKAYNG 184 (510)
Q Consensus 166 ~~~P~~~~~~-~g-~~~~y~g 184 (510)
.++|+++++. +| ....|.|
T Consensus 96 ~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 96 RGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred CccceEEEECCCCcEEEEecC
Confidence 9999999996 67 4445554
No 124
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.10 E-value=2.1e-10 Score=91.69 Aligned_cols=68 Identities=47% Similarity=0.870 Sum_probs=58.1
Q ss_pred eEEEeCcchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCC-CcCccce
Q 010469 436 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-NEHHRAK 503 (510)
Q Consensus 436 ~~~l~~~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~-n~~~~~~ 503 (510)
+..+++.+|++.+.+++++++|+||++||++|+.+.|.+.++++.++...++.++++|++. +.....+
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~ 70 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKK 70 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHh
Confidence 4678889999988777789999999999999999999999999998754579999999988 5444333
No 125
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.10 E-value=1.4e-10 Score=92.06 Aligned_cols=66 Identities=33% Similarity=0.708 Sum_probs=55.6
Q ss_pred eEEEeCcchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CCcEEEEEEeCCCCcCccce
Q 010469 436 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG-VDSIVIAKMDGTTNEHHRAK 503 (510)
Q Consensus 436 ~~~l~~~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~-~~~~~~~~id~~~n~~~~~~ 503 (510)
+..+++++|+..+.+. +++|.||++||++|+.+.|.+.++++.+++ ...+.++.+|++.+.....+
T Consensus 2 ~~~l~~~~f~~~~~~~--~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~ 68 (102)
T cd03005 2 VLELTEDNFDHHIAEG--NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSE 68 (102)
T ss_pred eeECCHHHHHHHhhcC--CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhh
Confidence 5678899999988543 599999999999999999999999999865 34799999999987755443
No 126
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.08 E-value=1.3e-10 Score=90.83 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=52.5
Q ss_pred cchhhHhhcc-CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccceeEeeee
Q 010469 442 NNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKVIFDVN 509 (510)
Q Consensus 442 ~~f~~~v~~~-~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~~~~~v~ 509 (510)
+.|++.+.+. +++|+|.|+|+||++|+.|.|.+.++|..+++ .+.|+++|++++...... |+|+
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~--~~~f~kVDVDev~dva~~--y~I~ 67 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK--MASIYLVDVDKVPVYTQY--FDIS 67 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC--ceEEEEEeccccHHHHHh--cCce
Confidence 4567777654 78999999999999999999999999999975 499999999966655444 5553
No 127
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.4e-10 Score=91.03 Aligned_cols=55 Identities=33% Similarity=0.676 Sum_probs=46.2
Q ss_pred ccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccceeEeeee
Q 010469 450 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKVIFDVN 509 (510)
Q Consensus 450 ~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~~~~~v~ 509 (510)
..++.++|+|||+||++|+.+.|.+.++|..+.+ +.|+++|+++ +.+.+..++|+
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~---v~Flkvdvde--~~~~~~~~~V~ 73 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD---VVFLKVDVDE--LEEVAKEFNVK 73 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC---CEEEEEeccc--CHhHHHhcCce
Confidence 3458999999999999999999999999999985 9999999998 55444445553
No 128
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.08 E-value=1e-09 Score=93.53 Aligned_cols=88 Identities=26% Similarity=0.409 Sum_probs=66.0
Q ss_pred eChhcHHHHHhCCCeEEEEEECC-CChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccH-------------------
Q 010469 98 LKERNFSDVIENNKFVMVEFYAP-WCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN------------------- 157 (510)
Q Consensus 98 l~~~~~~~~~~~~~~~~v~f~a~-wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~------------------- 157 (510)
++++.+...-.++++++|+||++ ||++|+.++|.+.++++.+++. ++.++.|....++
T Consensus 16 ~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~--~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~ 93 (146)
T PF08534_consen 16 LDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK--GVDVVGVSSDDDPPVREFLKKYGINFPVLSDP 93 (146)
T ss_dssp TTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT--TCEEEEEEESSSHHHHHHHHHTTTTSEEEEET
T ss_pred CCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC--ceEEEEecccCCHHHHHHHHhhCCCceEEech
Confidence 34444443224789999999999 9999999999999999998873 4666666554432
Q ss_pred --HHHHhCCCC---------cccEEEEEe-CC-eeeeecCCCC
Q 010469 158 --ELAHEYDVQ---------GFPTIYFFV-DG-QHKAYNGGRT 187 (510)
Q Consensus 158 --~~~~~~~v~---------~~P~~~~~~-~g-~~~~y~g~~~ 187 (510)
.+.+.+++. ++|+++++. +| ....+.|...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 94 DGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp TSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred HHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 677789988 999999996 77 4456666655
No 129
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.07 E-value=7.1e-10 Score=91.73 Aligned_cols=75 Identities=20% Similarity=0.403 Sum_probs=59.8
Q ss_pred CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCc-----c----------------------cHHHHH
Q 010469 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDAT-----E----------------------ENELAH 161 (510)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~-----~----------------------~~~~~~ 161 (510)
++++++|+||++||++|+.++|.+.++++++++ .++.++.|+.. + ...+.+
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~--~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~ 99 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD--DGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWR 99 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc--CCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHH
Confidence 578999999999999999999999999999986 35777777642 1 124566
Q ss_pred hCCCCcccEEEEEe-CC-eeeeecCC
Q 010469 162 EYDVQGFPTIYFFV-DG-QHKAYNGG 185 (510)
Q Consensus 162 ~~~v~~~P~~~~~~-~g-~~~~y~g~ 185 (510)
.|++.++|++++++ +| ....+.|+
T Consensus 100 ~~~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 100 AYGNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred HhCCCcCCeEEEECCCCcEEEEEecC
Confidence 78999999999996 67 44566664
No 130
>PLN02412 probable glutathione peroxidase
Probab=99.07 E-value=8.9e-10 Score=95.59 Aligned_cols=90 Identities=14% Similarity=0.209 Sum_probs=69.6
Q ss_pred CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcc-------c-HHH----HHhCC------------
Q 010469 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-------E-NEL----AHEYD------------ 164 (510)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-------~-~~~----~~~~~------------ 164 (510)
.+++++|+||++||++|+.++|.|.++++++++. ++.++.|+++. . .++ +++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~--g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~ 105 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ--GFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVN 105 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC--CcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeC
Confidence 5789999999999999999999999999999873 58888888742 1 111 22211
Q ss_pred ----------------------CCcccEEEEEe-CC-eeeeecCCCCHHHHHHHHHHHcC
Q 010469 165 ----------------------VQGFPTIYFFV-DG-QHKAYNGGRTKDAIVTWIKKKIG 200 (510)
Q Consensus 165 ----------------------v~~~P~~~~~~-~g-~~~~y~g~~~~~~l~~~i~~~~~ 200 (510)
|...|+++++. +| ...++.|..+.+.+.+.|+..+.
T Consensus 106 g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 106 GKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 33458989994 77 45688999999999999988764
No 131
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.07 E-value=1.4e-10 Score=104.19 Aligned_cols=72 Identities=26% Similarity=0.691 Sum_probs=60.7
Q ss_pred CCceEEEeCcchhhHhhcc----CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccceeEeee
Q 010469 433 DGDVKIVVGNNFDEIVLDE----SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKVIFDV 508 (510)
Q Consensus 433 ~~~~~~l~~~~f~~~v~~~----~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~~~~~v 508 (510)
...+..++..+|++.+..+ +++++|+||+|||++|+.+.|.|+++++.+++ .+.|+.+|++.+...... |+|
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~--~v~~~~VD~~~~~~l~~~--~~I 104 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG--QVNVADLDATRALNLAKR--FAI 104 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC--CeEEEEecCcccHHHHHH--cCC
Confidence 3568889999999988654 47999999999999999999999999999986 699999999987654443 454
No 132
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.06 E-value=4.1e-10 Score=81.67 Aligned_cols=57 Identities=26% Similarity=0.374 Sum_probs=50.8
Q ss_pred EEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEE
Q 010469 113 VMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (510)
Q Consensus 113 ~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~ 173 (510)
-++.||++||++|+...+.+++++.... ++.+..+|.++++++++++++.++|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~----~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP----NISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC----ceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 3788999999999999999999976532 59999999999999999999999999855
No 133
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.06 E-value=2.1e-10 Score=90.79 Aligned_cols=55 Identities=20% Similarity=0.564 Sum_probs=47.5
Q ss_pred EeCcchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 010469 439 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 495 (510)
Q Consensus 439 l~~~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~ 495 (510)
-+.++|.+.+ +++++++|+|||+||++|+.+.|.+.++++.+++ ..+.|+.+|++
T Consensus 5 ~~~~~~~~~i-~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~-~~~~~~~vd~d 59 (102)
T cd02948 5 NNQEEWEELL-SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD-DLLHFATAEAD 59 (102)
T ss_pred cCHHHHHHHH-ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC-CcEEEEEEeCC
Confidence 3567888866 4678999999999999999999999999998874 35889999998
No 134
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=99.05 E-value=7.8e-10 Score=88.11 Aligned_cols=102 Identities=24% Similarity=0.317 Sum_probs=80.0
Q ss_pred eeecCCCchhhhccCCccceEEEEEe-----ccchhhHHHHHHHHHHhcc-CceEEEEEEcCCcccccchhhhcCCCCCC
Q 010469 308 VTIFTRENAPSVFESPIKNQLLLFAV-----SNDSEKLLPVFEEAAKSFK-GKLIFVYVQMDNEDVGKPVSEYFGITGEA 381 (510)
Q Consensus 308 ~~~lt~~~~~~~~~~~~~~~~v~~~~-----~~~~~~~~~~~~~~A~~~~-~~~~f~~vd~~~~~~~~~l~~~~gi~~~~ 381 (510)
+.++|.+|...++..+ .++++++. .++.+.+.+.++++|++|+ +++.|+++|.... ...++.||++..+
T Consensus 1 v~~~~~en~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~---~~~l~~fgl~~~~ 75 (111)
T cd03073 1 VGHRTKDNRAQFTKKP--LVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDF---SHELEEFGLDFSG 75 (111)
T ss_pred CCeeccchHHHhccCC--eEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHH---HHHHHHcCCCccc
Confidence 3567888888886543 33333322 2456789999999999999 7999999997653 2478999999877
Q ss_pred --CcEEEEeeCCCCCcccCCCCC-CHHHHHHHHHHhh
Q 010469 382 --PKVLAYTGNDDAKKHILDGEL-TLDKIKTFGEDFL 415 (510)
Q Consensus 382 --~P~~~i~~~~~~~~y~~~~~~-t~e~i~~Fi~~~~ 415 (510)
.|++++.+... .+|.+.+++ +.++|.+|+++++
T Consensus 76 ~~~P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f~ 111 (111)
T cd03073 76 GEKPVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDFF 111 (111)
T ss_pred CCCCEEEEEeCCC-CccCCCcccCCHHHHHHHHHHhC
Confidence 89999987654 899988889 9999999999874
No 135
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.04 E-value=3.8e-10 Score=89.95 Aligned_cols=72 Identities=35% Similarity=0.674 Sum_probs=57.1
Q ss_pred eEEEeCcchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccceeEeee
Q 010469 436 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKVIFDV 508 (510)
Q Consensus 436 ~~~l~~~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~~~~~v 508 (510)
+..++..+|++.+.+ +++++|.||++||++|+++.|.+.++++.+.....+.++.+|++..+.+....++||
T Consensus 2 ~~~l~~~~~~~~~~~-~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i 73 (104)
T cd02997 2 VVHLTDEDFRKFLKK-EKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNV 73 (104)
T ss_pred eEEechHhHHHHHhh-CCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCC
Confidence 567888899987754 559999999999999999999999999998744479999999987433333333554
No 136
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.04 E-value=2.5e-10 Score=99.15 Aligned_cols=86 Identities=17% Similarity=0.267 Sum_probs=67.8
Q ss_pred HHHHHHhhcCcccccccCCCCCCCCCCceEEEeC-cchhhHhhccC--CcEEEEEeCCCChhhhhhhHHHHHHHHHhcCC
Q 010469 408 KTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVG-NNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV 484 (510)
Q Consensus 408 ~~Fi~~~~~Gkl~~~~kSe~~p~~~~~~~~~l~~-~~f~~~v~~~~--~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~ 484 (510)
+.|++.+...++....+.. ......+.+..++. .+|.+.+...+ .+|+|+||++||++|+.|.|.+..+|..+.
T Consensus 37 e~~l~~~R~~R~~el~~~~-~~~~~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-- 113 (175)
T cd02987 37 EEFLQQYREQRMQEMHAKL-PFGRRFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-- 113 (175)
T ss_pred HHHHHHHHHHHHHHHHHhc-cccCCCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC--
Confidence 4578887776666543321 11123688899999 99999987654 489999999999999999999999999885
Q ss_pred CcEEEEEEeCCCC
Q 010469 485 DSIVIAKMDGTTN 497 (510)
Q Consensus 485 ~~~~~~~id~~~n 497 (510)
.+.|++||++.+
T Consensus 114 -~vkF~kVd~d~~ 125 (175)
T cd02987 114 -AVKFCKIRASAT 125 (175)
T ss_pred -CeEEEEEeccch
Confidence 599999999975
No 137
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.03 E-value=2.6e-09 Score=91.53 Aligned_cols=88 Identities=18% Similarity=0.216 Sum_probs=66.4
Q ss_pred CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCc-------cc----HHHHHh-CCC-----------
Q 010469 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDAT-------EE----NELAHE-YDV----------- 165 (510)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~-------~~----~~~~~~-~~v----------- 165 (510)
++++++|+|||+||++|+.++|.+.++++++++ .++.++.|+|. +. ..++++ +++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~--~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~ 98 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGP--SHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKIL 98 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh--CCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecC
Confidence 578999999999999999999999999999987 35889999862 11 223322 221
Q ss_pred ---------------CcccE----EEEEe-CC-eeeeecCCCCHHHHHHHHHHH
Q 010469 166 ---------------QGFPT----IYFFV-DG-QHKAYNGGRTKDAIVTWIKKK 198 (510)
Q Consensus 166 ---------------~~~P~----~~~~~-~g-~~~~y~g~~~~~~l~~~i~~~ 198 (510)
.++|+ ++++. +| ....|.|..+.+.+...|++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 99 GSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 13676 77774 77 446889999999888887654
No 138
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.02 E-value=3.1e-10 Score=89.28 Aligned_cols=55 Identities=18% Similarity=0.403 Sum_probs=45.1
Q ss_pred cchhhHhh-ccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC-CCcC
Q 010469 442 NNFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-TNEH 499 (510)
Q Consensus 442 ~~f~~~v~-~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~-~n~~ 499 (510)
+++.+.+. ..+++++|.|||+||++|+.++|.++++++.+++ +.++.+|.+ .+..
T Consensus 7 ~~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~---~~~~~vd~~~~~~~ 63 (100)
T cd02999 7 NIALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ---IRHLAIEESSIKPS 63 (100)
T ss_pred hHHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc---CceEEEECCCCCHH
Confidence 45555554 4578999999999999999999999999998864 788999987 4443
No 139
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.02 E-value=5.4e-09 Score=84.61 Aligned_cols=107 Identities=13% Similarity=0.163 Sum_probs=89.1
Q ss_pred cEEeChhcHHHHHhCCCeEEEEEECC--CChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEE
Q 010469 95 VVVLKERNFSDVIENNKFVMVEFYAP--WCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIY 172 (510)
Q Consensus 95 v~~l~~~~~~~~~~~~~~~~v~f~a~--wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~ 172 (510)
...++..+++..+......+|.|-.. -++.+-...-.|.++++++.+ .++.++.||+++++.++.+|||.++||++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~--~~v~~akVDiD~~~~LA~~fgV~siPTLl 96 (132)
T PRK11509 19 WTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD--YTWQVAIADLEQSEAIGDRFGVFRFPATL 96 (132)
T ss_pred CCccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcC--CceEEEEEECCCCHHHHHHcCCccCCEEE
Confidence 34456788888887777666655442 577788888899999999964 25999999999999999999999999999
Q ss_pred EEeCCee-eeecCCCCHHHHHHHHHHHcCCCc
Q 010469 173 FFVDGQH-KAYNGGRTKDAIVTWIKKKIGPGI 203 (510)
Q Consensus 173 ~~~~g~~-~~y~g~~~~~~l~~~i~~~~~~~~ 203 (510)
+|++|+. ....|..+.+.+.+||.+.+..+.
T Consensus 97 ~FkdGk~v~~i~G~~~k~~l~~~I~~~L~~~~ 128 (132)
T PRK11509 97 VFTGGNYRGVLNGIHPWAELINLMRGLVEPQQ 128 (132)
T ss_pred EEECCEEEEEEeCcCCHHHHHHHHHHHhcCcC
Confidence 9999955 588899999999999999987653
No 140
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.00 E-value=5.1e-10 Score=90.09 Aligned_cols=67 Identities=24% Similarity=0.301 Sum_probs=55.8
Q ss_pred CCceEEEeC-cchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccce
Q 010469 433 DGDVKIVVG-NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 503 (510)
Q Consensus 433 ~~~~~~l~~-~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~ 503 (510)
.|.+..++. .+|.+.+.+ +++|+|+||++||++|+.|.|.+.++++.+. ++.|++||++.+.....+
T Consensus 3 ~g~v~~i~~~~~~~~~i~~-~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~---~i~f~~Vd~~~~~~l~~~ 70 (113)
T cd02989 3 HGKYREVSDEKEFFEIVKS-SERVVCHFYHPEFFRCKIMDKHLEILAKKHL---ETKFIKVNAEKAPFLVEK 70 (113)
T ss_pred CCCeEEeCCHHHHHHHHhC-CCcEEEEEECCCCccHHHHHHHHHHHHHHcC---CCEEEEEEcccCHHHHHH
Confidence 356677777 788888854 5789999999999999999999999999875 489999999988755444
No 141
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.98 E-value=3.3e-09 Score=80.97 Aligned_cols=76 Identities=16% Similarity=0.245 Sum_probs=62.8
Q ss_pred CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCCeeeeecCCCCH
Q 010469 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTK 188 (510)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~y~g~~~~ 188 (510)
++..-+..|+++||++|....+.+.++++.+. ++.+..+|.++.++++++|+|.++|++++ +|+. .+.|..+.
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~----~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~-~~~G~~~~ 83 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP----NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGEL-FGFGRMTL 83 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC----CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEE-EEeCCCCH
Confidence 34567889999999999999999999997653 49999999999999999999999999964 7743 34586665
Q ss_pred HHH
Q 010469 189 DAI 191 (510)
Q Consensus 189 ~~l 191 (510)
+.+
T Consensus 84 ~e~ 86 (89)
T cd03026 84 EEI 86 (89)
T ss_pred HHH
Confidence 554
No 142
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.98 E-value=2.7e-09 Score=91.35 Aligned_cols=43 Identities=16% Similarity=0.216 Sum_probs=38.0
Q ss_pred CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCc
Q 010469 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDAT 154 (510)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~ 154 (510)
.+++++|+|||+||+ |+.++|.+.++++++++ .++.++.|+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~--~~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKD--RGLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcC--CCEEEEEeccC
Confidence 578999999999999 99999999999999976 35888888763
No 143
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.98 E-value=3.9e-09 Score=93.63 Aligned_cols=87 Identities=20% Similarity=0.321 Sum_probs=61.8
Q ss_pred hCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeC------------------cccHHHHHhCCCCccc
Q 010469 108 ENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDA------------------TEENELAHEYDVQGFP 169 (510)
Q Consensus 108 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~------------------~~~~~~~~~~~v~~~P 169 (510)
..+++++|+||++||++|+++.|.+.++.+... .++.++..|- ....++++.|++.++|
T Consensus 72 ~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~---~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P 148 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE---TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIP 148 (189)
T ss_pred cCCCEEEEEEECCCChhHHHHHHHHHHHHHhcC---CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccc
Confidence 367899999999999999999999999876532 2444443220 0134677889999999
Q ss_pred EEEEEe-CCeeeeecCC-CCHHHHHHHHHHH
Q 010469 170 TIYFFV-DGQHKAYNGG-RTKDAIVTWIKKK 198 (510)
Q Consensus 170 ~~~~~~-~g~~~~y~g~-~~~~~l~~~i~~~ 198 (510)
++++++ +|+. .+.|. ...+.+.+.++..
T Consensus 149 ~~~lID~~G~I-~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 149 YGVLLDQDGKI-RAKGLTNTREHLESLLEAD 178 (189)
T ss_pred eEEEECCCCeE-EEccCCCCHHHHHHHHHHH
Confidence 999997 5643 34554 3557777777654
No 144
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.98 E-value=6.6e-10 Score=87.16 Aligned_cols=70 Identities=16% Similarity=0.138 Sum_probs=59.3
Q ss_pred ceEEEeCcchhhHhhccCCcEEEEEeCCC--ChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccceeEeeee
Q 010469 435 DVKIVVGNNFDEIVLDESKDVLLEIYAPW--CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKVIFDVN 509 (510)
Q Consensus 435 ~~~~l~~~~f~~~v~~~~~~vlv~f~~~~--c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~~~~~v~ 509 (510)
...+++..||++.+ +.+..++|+||++| |++|+.+.|.+.++++.+.+ .+.|+++|++.+...+.+ |+|+
T Consensus 11 ~~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~--~v~f~kVdid~~~~la~~--f~V~ 82 (111)
T cd02965 11 GWPRVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG--RFRAAVVGRADEQALAAR--FGVL 82 (111)
T ss_pred CCcccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC--cEEEEEEECCCCHHHHHH--cCCC
Confidence 34568999999877 56688999999997 99999999999999999986 789999999988755444 6654
No 145
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.96 E-value=6.4e-10 Score=88.31 Aligned_cols=64 Identities=52% Similarity=1.017 Sum_probs=54.7
Q ss_pred EeCcchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccce
Q 010469 439 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 503 (510)
Q Consensus 439 l~~~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~ 503 (510)
|++++|++.+. .+++++|+||++||++|+.+.|.+.++++.+++..++.++.+|++.+.....+
T Consensus 1 l~~~~~~~~~~-~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 64 (102)
T TIGR01126 1 LTASNFDDIVL-SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASR 64 (102)
T ss_pred CchhhHHHHhc-cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHh
Confidence 45678998886 67899999999999999999999999999997644799999999887655444
No 146
>PRK10996 thioredoxin 2; Provisional
Probab=98.93 E-value=1.4e-09 Score=91.18 Aligned_cols=71 Identities=27% Similarity=0.733 Sum_probs=58.7
Q ss_pred CCceEEEeCcchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccceeEeee
Q 010469 433 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKVIFDV 508 (510)
Q Consensus 433 ~~~~~~l~~~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~~~~~v 508 (510)
++.+..++..+|++.+ +.+++++|+||++||++|+.+.|.|.++++.+.+ ++.|+++|++.+.....+ |+|
T Consensus 34 ~~~~i~~~~~~~~~~i-~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~--~~V 104 (139)
T PRK10996 34 DGEVINATGETLDKLL-QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG--KVRFVKVNTEAERELSAR--FRI 104 (139)
T ss_pred CCCCEEcCHHHHHHHH-hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CeEEEEEeCCCCHHHHHh--cCC
Confidence 5566778888999866 4578999999999999999999999999998876 799999999877654433 444
No 147
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.91 E-value=1.5e-09 Score=107.52 Aligned_cols=66 Identities=27% Similarity=0.624 Sum_probs=57.2
Q ss_pred CCceEEEeCcchhhHhh--ccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcC
Q 010469 433 DGDVKIVVGNNFDEIVL--DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 499 (510)
Q Consensus 433 ~~~~~~l~~~~f~~~v~--~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~ 499 (510)
+..|..|+..||+..+. +.+++|||.||||||++|+.|.|.|.++++.+++ .++.|+++|++.++.
T Consensus 350 ~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~-~~v~~~kVdvD~~~~ 417 (463)
T TIGR00424 350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAG-SGVKVAKFRADGDQK 417 (463)
T ss_pred CCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc-CCcEEEEEECCCCcc
Confidence 45688899999999885 4678999999999999999999999999999975 358999999987643
No 148
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.90 E-value=1.6e-09 Score=85.74 Aligned_cols=62 Identities=35% Similarity=0.728 Sum_probs=53.1
Q ss_pred eCcchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccce
Q 010469 440 VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 503 (510)
Q Consensus 440 ~~~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~ 503 (510)
+.++|.+.+.+.+++++|+||++||++|+.+.|.+.++++.+.+ ++.|+.+|++.+.....+
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~ 63 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG--KVKFVKLNVDENPDIAAK 63 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC--CeEEEEEECCCCHHHHHH
Confidence 45688888877778999999999999999999999999988875 799999999987654333
No 149
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.89 E-value=7e-09 Score=82.45 Aligned_cols=88 Identities=43% Similarity=0.610 Sum_probs=71.6
Q ss_pred cceEEEEEec--cchhhHHHHHHHHHHhccCceEEEEEEcCCcccccchhhhcCCCCCCCcEEEEeeCCCCCcccCCC-C
Q 010469 325 KNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDG-E 401 (510)
Q Consensus 325 ~~~~v~~~~~--~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~~~~~~l~~~~gi~~~~~P~~~i~~~~~~~~y~~~~-~ 401 (510)
.+++++|... .+++.+.+.++++|++|++++.|+|+|++. ...+++.+|+.....|++++++.+++.+|.+.+ .
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~---~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~ 89 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADD---FGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEE 89 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHh---hHHHHHHcCCChhhCCEEEEEecccccccCCCccc
Confidence 3455556544 468999999999999999999999999876 457899999986678999999886566777654 4
Q ss_pred CCHHHHHHHHHHhh
Q 010469 402 LTLDKIKTFGEDFL 415 (510)
Q Consensus 402 ~t~e~i~~Fi~~~~ 415 (510)
.+.++|.+|+++++
T Consensus 90 ~~~~~l~~fi~~~~ 103 (103)
T cd02982 90 LTAESLEEFVEDFL 103 (103)
T ss_pred cCHHHHHHHHHhhC
Confidence 69999999999864
No 150
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.89 E-value=1.2e-08 Score=80.10 Aligned_cols=95 Identities=25% Similarity=0.467 Sum_probs=83.2
Q ss_pred ccccchhHHHHhccCCCeEEEEEecCCCCcchHHHHHhc-cccCceeEEEcCChhHHHhhCCCCCCCCCeEEEeccCCCc
Q 010469 204 YNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEK 282 (510)
Q Consensus 204 ~~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~l~~~~~~~~~~~~p~l~~~~~~~~~ 282 (510)
..+++.++++.++...+.++|+||...++.....|..+| .++..+.|+.+.++++++++++.. |++++|++.++.
T Consensus 2 ~~i~s~~~l~~~~~~~~~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~~~~~~~~~~~~~~----~~i~l~~~~~~~ 77 (97)
T cd02981 2 KELTSKEELEKFLDKDDVVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHTSDKEVAKKLKVKP----GSVVLFKPFEEE 77 (97)
T ss_pred eecCCHHHHHHHhccCCeEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEEChHHHHHHcCCCC----CceEEeCCcccC
Confidence 467888999999999999999999988888899999988 677899999999999999987764 899999987777
Q ss_pred eeeccCCCCCHHHHHHHHHhc
Q 010469 283 ISYFADGKFDKSTIADFVFSN 303 (510)
Q Consensus 283 ~~~y~~g~~~~~~i~~fi~~~ 303 (510)
...| .|.++.++|.+||..+
T Consensus 78 ~~~y-~g~~~~~~l~~fi~~~ 97 (97)
T cd02981 78 PVEY-DGEFTEESLVEFIKDN 97 (97)
T ss_pred CccC-CCCCCHHHHHHHHHhC
Confidence 8889 8888899999999754
No 151
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=98.89 E-value=1.5e-08 Score=80.03 Aligned_cols=98 Identities=18% Similarity=0.276 Sum_probs=84.2
Q ss_pred cccccchhHHHHhcc-CCCeEEEEEecCCCCcchHHHHHhc-cccCceeEEEcCChhHHHhhCCCCCCCCCeEEEeccCC
Q 010469 203 IYNITTLDEAERVLT-SETKVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKET 280 (510)
Q Consensus 203 ~~~i~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~l~~~~~~~~~~~~p~l~~~~~~~ 280 (510)
+..|.+.++++.++. .++.++|+||.+...+....|..+| .++.++.|+++.++++...+++.. |.++++++.+
T Consensus 2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~~~~~~----~~i~l~~~~~ 77 (102)
T cd03066 2 VEIINSERELQAFENIEDDIKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFATFDSKVAKKLGLKM----NEVDFYEPFM 77 (102)
T ss_pred ceEcCCHHHHHHHhcccCCeEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEECcHHHHHHcCCCC----CcEEEeCCCC
Confidence 567888899999999 8999999999998888899999988 677999999999999999998764 8899998755
Q ss_pred CceeeccCCCCCHHHHHHHHHhcC
Q 010469 281 EKISYFADGKFDKSTIADFVFSNK 304 (510)
Q Consensus 281 ~~~~~y~~g~~~~~~i~~fi~~~~ 304 (510)
+....|++|.++.+.|.+||..+.
T Consensus 78 e~~~~y~~g~~~~~~l~~fi~~~~ 101 (102)
T cd03066 78 EEPVTIPDKPYSEEELVDFVEEHK 101 (102)
T ss_pred CCCcccCCCCCCHHHHHHHHHHhc
Confidence 566668566788999999998764
No 152
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=3.2e-08 Score=79.96 Aligned_cols=103 Identities=18% Similarity=0.289 Sum_probs=74.7
Q ss_pred hCCCeEEEEEECCCChHHhhhhHHHH---HHHHHHhhcCCCeEEEEEeCccc----------------HHHHHhCCCCcc
Q 010469 108 ENNKFVMVEFYAPWCGHCQALAPEYA---AAATELKSANESVVLAKVDATEE----------------NELAHEYDVQGF 168 (510)
Q Consensus 108 ~~~~~~~v~f~a~wC~~C~~~~p~~~---~~~~~~~~~~~~v~~~~vd~~~~----------------~~~~~~~~v~~~ 168 (510)
..++..+++|-++.|+.|.++...+. ++.+.+.+ ++.++.+|.... ++|+++|+|++.
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~---hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst 116 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE---HFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST 116 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh---CeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccC
Confidence 46789999999999999999887654 33444444 678888776532 489999999999
Q ss_pred cEEEEEe-CC-eeeeecCCCCHHHHHHHHHHHcCCCcccccchhHHH
Q 010469 169 PTIYFFV-DG-QHKAYNGGRTKDAIVTWIKKKIGPGIYNITTLDEAE 213 (510)
Q Consensus 169 P~~~~~~-~g-~~~~y~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~ 213 (510)
|++++|+ +| ......|.+.++.+...+.-..........+.+++.
T Consensus 117 PtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g~ykd~~~dedf~ 163 (182)
T COG2143 117 PTFVFFDKTGKTILELPGYMPPEQFLAVLKYVADGKYKDTKTDEDFT 163 (182)
T ss_pred ceEEEEcCCCCEEEecCCCCCHHHHHHHHHHHHHHHHhhhccHHHHH
Confidence 9999996 66 556788999999887766554433333333334443
No 153
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.88 E-value=3.5e-08 Score=79.90 Aligned_cols=92 Identities=15% Similarity=0.297 Sum_probs=73.2
Q ss_pred HHHhCCCeEEEEEECCCChHHhhhhHH-H--HHHHHHHhhcCCCeEEEEEeCc--ccHHHHHhCCCCcccEEEEEe--CC
Q 010469 105 DVIENNKFVMVEFYAPWCGHCQALAPE-Y--AAAATELKSANESVVLAKVDAT--EENELAHEYDVQGFPTIYFFV--DG 177 (510)
Q Consensus 105 ~~~~~~~~~~v~f~a~wC~~C~~~~p~-~--~~~~~~~~~~~~~v~~~~vd~~--~~~~~~~~~~v~~~P~~~~~~--~g 177 (510)
...+++|+++|+|+++||++|+.+... | .++.+.++. ++.+..+|.+ +...++..|++.++|+++++. +|
T Consensus 12 ~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~---~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g 88 (114)
T cd02958 12 EAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE---NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTG 88 (114)
T ss_pred HHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh---CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccC
Confidence 344678999999999999999998763 3 344555554 6788888876 456789999999999999996 46
Q ss_pred -eeeeecCCCCHHHHHHHHHHHc
Q 010469 178 -QHKAYNGGRTKDAIVTWIKKKI 199 (510)
Q Consensus 178 -~~~~y~g~~~~~~l~~~i~~~~ 199 (510)
...+..|..+.+.+.+.+++..
T Consensus 89 ~~l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 89 EVLKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred cEeEEEcCCCCHHHHHHHHHHHH
Confidence 5568899999999998887754
No 154
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=98.87 E-value=1.3e-08 Score=80.52 Aligned_cols=95 Identities=20% Similarity=0.350 Sum_probs=82.0
Q ss_pred cccccchhHHHHhccCCCeEEEEEecCCCCcchHHHHHhc-cccCceeEEEcCChhHHHhhCCCCCCCCCeEEEecc---
Q 010469 203 IYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKK--- 278 (510)
Q Consensus 203 ~~~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~l~~~~~~~~~~~~p~l~~~~~--- 278 (510)
+.++.+.+++++++..++.++|+||.......+..|..+| .++.++.|+++.+.++.+.+++ . |++++|++
T Consensus 2 ~~~i~s~~~l~~f~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~~~~-~----~~ivl~~p~~~ 76 (104)
T cd03069 2 SVELRTEAEFEKFLSDDDASVVGFFEDEDSKLLSEFLKAADTLRESFRFAHTSDKQLLEKYGY-G----EGVVLFRPPRL 76 (104)
T ss_pred ccccCCHHHHHHHhccCCcEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEEEChHHHHHhcCC-C----CceEEEechhh
Confidence 4577889999999999999999999988888899999987 6779999999999999999987 5 78999944
Q ss_pred ---CCCceeeccCCCCCHHHHHHHHHhc
Q 010469 279 ---ETEKISYFADGKFDKSTIADFVFSN 303 (510)
Q Consensus 279 ---~~~~~~~y~~g~~~~~~i~~fi~~~ 303 (510)
.++....| .|+++.+.|.+||..+
T Consensus 77 ~~k~de~~~~y-~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 77 SNKFEDSSVKF-DGDLDSSKIKKFIREN 103 (104)
T ss_pred hcccCcccccc-cCcCCHHHHHHHHHhh
Confidence 44566779 9989999999999875
No 155
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.86 E-value=2.8e-09 Score=89.55 Aligned_cols=64 Identities=20% Similarity=0.391 Sum_probs=49.1
Q ss_pred cchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccceeEeee
Q 010469 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKVIFDV 508 (510)
Q Consensus 442 ~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~~~~~v 508 (510)
..|++.+ ..++++||+|||+||++|+.+.|.+.++++.+.+ ++.|+.+|++.+.......+|+|
T Consensus 11 ~~~~~a~-~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~--~~~~v~v~vd~~~~~~~~~~~~V 74 (142)
T cd02950 11 TPPEVAL-SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD--QVNFVMLNVDNPKWLPEIDRYRV 74 (142)
T ss_pred CCHHHHH-hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc--CeeEEEEEcCCcccHHHHHHcCC
Confidence 3566544 5678999999999999999999999999999876 57788888876654333334554
No 156
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.85 E-value=3.5e-09 Score=83.13 Aligned_cols=58 Identities=22% Similarity=0.528 Sum_probs=48.7
Q ss_pred CcchhhHhhcc-CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCc
Q 010469 441 GNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH 500 (510)
Q Consensus 441 ~~~f~~~v~~~-~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~ 500 (510)
.++|++.+... ++.++|+||++||++|+.|.|.+.++++.+. ..+.++++|++.+...
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~--~~i~~~~vd~~~~~~~ 60 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAF--PSVLFLSIEAEELPEI 60 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhC--CceEEEEEccccCHHH
Confidence 45778877655 5899999999999999999999999999874 3899999998765543
No 157
>PLN02309 5'-adenylylsulfate reductase
Probab=98.84 E-value=3.8e-09 Score=104.58 Aligned_cols=63 Identities=29% Similarity=0.646 Sum_probs=56.1
Q ss_pred CCceEEEeCcchhhHhh--ccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 010469 433 DGDVKIVVGNNFDEIVL--DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 496 (510)
Q Consensus 433 ~~~~~~l~~~~f~~~v~--~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~ 496 (510)
.+.+..++.++|++.+. +.++++||+||+|||++|+.|.|.|.++++.+.+ .++.|+++|++.
T Consensus 344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~-~~V~f~kVD~d~ 408 (457)
T PLN02309 344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAG-SGVKVAKFRADG 408 (457)
T ss_pred CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc-CCeEEEEEECCC
Confidence 56788899999999874 5678999999999999999999999999999875 469999999993
No 158
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.82 E-value=1.1e-08 Score=84.28 Aligned_cols=73 Identities=26% Similarity=0.525 Sum_probs=59.9
Q ss_pred CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccH-------------------------HHHHhC
Q 010469 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN-------------------------ELAHEY 163 (510)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-------------------------~~~~~~ 163 (510)
.+|.+.++|.|.||+||+.+-|.+.++++++++.+..+.++-|+.+.+. +++++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 5799999999999999999999999999999986555666655544332 678899
Q ss_pred CCCcccEEEEEe-CCeeee
Q 010469 164 DVQGFPTIYFFV-DGQHKA 181 (510)
Q Consensus 164 ~v~~~P~~~~~~-~g~~~~ 181 (510)
+|.++|+++++. +|..+.
T Consensus 112 ~v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVVT 130 (157)
T ss_pred ccCcCceeEEecCCCCEeh
Confidence 999999999996 775443
No 159
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.82 E-value=4.5e-09 Score=84.25 Aligned_cols=55 Identities=20% Similarity=0.411 Sum_probs=47.0
Q ss_pred cchhhHhhcc-CCcEEEEEeC-------CCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCc
Q 010469 442 NNFDEIVLDE-SKDVLLEIYA-------PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 498 (510)
Q Consensus 442 ~~f~~~v~~~-~~~vlv~f~~-------~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~ 498 (510)
.+|.+.+.+. +++++|.||| +||++|+.+.|.+++++..+++ ++.|++||++.+.
T Consensus 10 ~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~--~v~fv~Vdvd~~~ 72 (119)
T cd02952 10 EEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE--DCVFIYCDVGDRP 72 (119)
T ss_pred HHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC--CCEEEEEEcCCcc
Confidence 4677777654 5799999999 9999999999999999999875 6899999998743
No 160
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.82 E-value=5e-08 Score=85.37 Aligned_cols=91 Identities=19% Similarity=0.340 Sum_probs=70.2
Q ss_pred CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcc-------c----------------------HHH
Q 010469 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-------E----------------------NEL 159 (510)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-------~----------------------~~~ 159 (510)
+++++||+||++||+.|....+.+.++++++++ .++.++.|.++. . ..+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~--~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~ 101 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA--KGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEV 101 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh--CCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHH
Confidence 678999999999999999999999999999976 358888887643 1 245
Q ss_pred HHhCCCCcccEEEEEe-CCeeeeec-----------CCCCHHHHHHHHHHHcCCC
Q 010469 160 AHEYDVQGFPTIYFFV-DGQHKAYN-----------GGRTKDAIVTWIKKKIGPG 202 (510)
Q Consensus 160 ~~~~~v~~~P~~~~~~-~g~~~~y~-----------g~~~~~~l~~~i~~~~~~~ 202 (510)
++.|++...|++++++ +|+.. |. +..+.+.+.+-|...+...
T Consensus 102 ~~~~~v~~~P~~~lid~~G~v~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 155 (171)
T cd02969 102 AKAYGAACTPDFFLFDPDGKLV-YRGRIDDSRPGNDPPVTGRDLRAALDALLAGK 155 (171)
T ss_pred HHHcCCCcCCcEEEECCCCeEE-EeecccCCcccccccccHHHHHHHHHHHHcCC
Confidence 6788999999999996 66432 33 2245677888888777544
No 161
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.81 E-value=6.5e-09 Score=82.72 Aligned_cols=59 Identities=29% Similarity=0.765 Sum_probs=47.6
Q ss_pred cchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-CcEEEEEEeCCCCcCccc
Q 010469 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEHHRA 502 (510)
Q Consensus 442 ~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~-~~~~~~~id~~~n~~~~~ 502 (510)
++|++. . .++.++|.||++||++|+++.|.+.++++.++.. .++.++.+|++.+.....
T Consensus 7 ~~~~~~-~-~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~ 66 (104)
T cd03000 7 DSFKDV-R-KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIAS 66 (104)
T ss_pred hhhhhh-c-cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHh
Confidence 577763 2 3579999999999999999999999999988542 359999999987654443
No 162
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.80 E-value=4.2e-08 Score=86.55 Aligned_cols=90 Identities=14% Similarity=0.228 Sum_probs=64.2
Q ss_pred CCCeE-EEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcc-------c-H---HH-HHhC------------
Q 010469 109 NNKFV-MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-------E-N---EL-AHEY------------ 163 (510)
Q Consensus 109 ~~~~~-~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-------~-~---~~-~~~~------------ 163 (510)
.++++ ++.+||+||++|++++|.|.++++++++ .++.++.|+|+. . . .+ .+++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~--~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~ 116 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKS--QGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEV 116 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhh--CCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEec
Confidence 56654 5566999999999999999999999987 358888887631 0 1 11 1111
Q ss_pred ------------------------CCCcccE---EEEEe-CC-eeeeecCCCCHHHHHHHHHHHcC
Q 010469 164 ------------------------DVQGFPT---IYFFV-DG-QHKAYNGGRTKDAIVTWIKKKIG 200 (510)
Q Consensus 164 ------------------------~v~~~P~---~~~~~-~g-~~~~y~g~~~~~~l~~~i~~~~~ 200 (510)
++.++|+ +++++ +| ...+|.|..+.+.+.+.|.+.+.
T Consensus 117 ~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 117 NGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred CCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 2446784 57774 78 45688899999988888877653
No 163
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.80 E-value=2.5e-06 Score=78.80 Aligned_cols=259 Identities=17% Similarity=0.211 Sum_probs=161.2
Q ss_pred cccccchhHHHHhccCCCeEEEEEecCCCCcch--------HHHHH-hcc--ccCceeEEEc---CChhHHHhhCCCCCC
Q 010469 203 IYNITTLDEAERVLTSETKVVLGYLNSLVGSES--------EVLAD-ASR--LEDDVNFYQT---TNPDVAKIFHLDSKV 268 (510)
Q Consensus 203 ~~~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------~~~~~-~~~--~~~~~~f~~~---~~~~l~~~~~~~~~~ 268 (510)
+..|+. .++.+.+.+.+..++.|+....+... +.+.+ +|+ -...+.|+.+ .+..+++++|+..
T Consensus 36 Vi~Lne-KNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E-- 112 (383)
T PF01216_consen 36 VIDLNE-KNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEE-- 112 (383)
T ss_dssp CEEE-T-TTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--S--
T ss_pred eEEcch-hHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccc--
Confidence 445443 78888888888888888766554321 11223 344 3567888876 4568999999987
Q ss_pred CCCeEEEeccCCCceeeccCCCCCHHHHHHHHHhcCCCceeecCCCchhhhccC-CccceEEEEEeccchhhHHHHHHHH
Q 010469 269 NRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFES-PIKNQLLLFAVSNDSEKLLPVFEEA 347 (510)
Q Consensus 269 ~~p~l~~~~~~~~~~~~y~~g~~~~~~i~~fi~~~~~p~~~~lt~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~ 347 (510)
.++|.+|+.+. .+.| .|.++.+.+..||..---..|..++...-...+.+ ....-++-|....++. ....|.++
T Consensus 113 -~~SiyVfkd~~--~IEy-dG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~-~yk~FeeA 187 (383)
T PF01216_consen 113 -EGSIYVFKDGE--VIEY-DGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSEDSE-HYKEFEEA 187 (383)
T ss_dssp -TTEEEEEETTE--EEEE--S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSH-HHHHHHHH
T ss_pred -cCcEEEEECCc--EEEe-cCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCCcH-HHHHHHHH
Confidence 79999998764 8999 99999999999999877777888877654433333 2223344444444443 56789999
Q ss_pred HHhccCceEEEEEEcCCcccccchhhhcCCCCCCCcEEEEeeCCCCC-cccCCCCCCHHHHHHHHHHhhcCcccccccCC
Q 010469 348 AKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK-KHILDGELTLDKIKTFGEDFLEGKLKPFFKSD 426 (510)
Q Consensus 348 A~~~~~~~~f~~vd~~~~~~~~~l~~~~gi~~~~~P~~~i~~~~~~~-~y~~~~~~t~e~i~~Fi~~~~~Gkl~~~~kSe 426 (510)
|..|..-+.|..+= .+.+++.+|+.. .-+-++.+-... ......+.+.+.|.+||+.-.
T Consensus 188 Ae~F~p~IkFfAtf------d~~vAk~L~lK~---nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~----------- 247 (383)
T PF01216_consen 188 AEHFQPYIKFFATF------DKKVAKKLGLKL---NEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHK----------- 247 (383)
T ss_dssp HHHCTTTSEEEEE-------SHHHHHHHT-ST---T-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT------------
T ss_pred HHhhcCceeEEEEe------cchhhhhcCccc---cceeeeccccCCCccCCCCCCCHHHHHHHHHHhc-----------
Confidence 99999988886553 346788888852 334444332222 222334678999999998733
Q ss_pred CCCCCCCCceEEEeCcchhhHhhcc-CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 010469 427 PIPETNDGDVKIVVGNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 495 (510)
Q Consensus 427 ~~p~~~~~~~~~l~~~~f~~~v~~~-~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~ 495 (510)
...+++++.+++-+.=.+. ....+|-|.-.--+.=.++...+.++|+.....+.+.++-||-+
T Consensus 248 ------rptlrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD 311 (383)
T PF01216_consen 248 ------RPTLRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPD 311 (383)
T ss_dssp ------S-SEEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GG
T ss_pred ------hhHhhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCC
Confidence 3456778888866554433 45688888888888999999999999998877678888888854
No 164
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.80 E-value=2.4e-08 Score=75.49 Aligned_cols=69 Identities=35% Similarity=0.686 Sum_probs=52.4
Q ss_pred HHHHHhCCCeEEEEEECCCChHHhhhhHHH---HHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEe
Q 010469 103 FSDVIENNKFVMVEFYAPWCGHCQALAPEY---AAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFV 175 (510)
Q Consensus 103 ~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~ 175 (510)
+.+..+++++++|+|+++||++|+.+...+ .++.+.+.+ ++..+.||.++...... +...++|++++++
T Consensus 10 l~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~---~fv~v~vd~~~~~~~~~-~~~~~~P~~~~ld 81 (82)
T PF13899_consen 10 LAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK---NFVLVKVDVDDEDPNAQ-FDRQGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH---CSEEEEEETTTHHHHHH-HHHCSSSEEEEEE
T ss_pred HHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC---CEEEEEEEcCCCChhHH-hCCccCCEEEEeC
Confidence 444557799999999999999999998877 445554555 79999999976654332 2226699999986
No 165
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.78 E-value=6.6e-09 Score=91.53 Aligned_cols=83 Identities=17% Similarity=0.245 Sum_probs=66.2
Q ss_pred HHHHhhcCcccccccCCCCCCCCCCceEEEeCcchhhHhhccC--CcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcE
Q 010469 410 FGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSI 487 (510)
Q Consensus 410 Fi~~~~~Gkl~~~~kSe~~p~~~~~~~~~l~~~~f~~~v~~~~--~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~ 487 (510)
|++.+...++....+... ...-|.+..++..+|...|...+ .+|||.||++||++|+.|.|.+.++|..+. .+
T Consensus 60 ~Le~yR~kRl~el~~~~~--~~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~---~v 134 (192)
T cd02988 60 FLEEYRRKRLAEMKALAE--KSKFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP---DT 134 (192)
T ss_pred HHHHHHHHHHHHHHHhhh--hCCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC---CC
Confidence 777777776665433211 12368899999999998886554 489999999999999999999999999985 48
Q ss_pred EEEEEeCCCC
Q 010469 488 VIAKMDGTTN 497 (510)
Q Consensus 488 ~~~~id~~~n 497 (510)
.|++||++..
T Consensus 135 kFvkI~ad~~ 144 (192)
T cd02988 135 KFVKIISTQC 144 (192)
T ss_pred EEEEEEhHHh
Confidence 9999999753
No 166
>PTZ00051 thioredoxin; Provisional
Probab=98.77 E-value=9.7e-09 Score=80.79 Aligned_cols=62 Identities=26% Similarity=0.607 Sum_probs=48.5
Q ss_pred EEEeC-cchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccc
Q 010469 437 KIVVG-NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA 502 (510)
Q Consensus 437 ~~l~~-~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~ 502 (510)
..++. ++|.+.+ +.+++++|+||++||++|+.+.|.+.++++.+. ++.|+.+|++.+.....
T Consensus 3 ~~i~~~~~~~~~~-~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~---~~~~~~vd~~~~~~~~~ 65 (98)
T PTZ00051 3 HIVTSQAEFESTL-SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT---KMVFVKVDVDELSEVAE 65 (98)
T ss_pred EEecCHHHHHHHH-hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC---CcEEEEEECcchHHHHH
Confidence 34443 4566644 567899999999999999999999999999765 48999999987654433
No 167
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.76 E-value=9e-09 Score=81.30 Aligned_cols=65 Identities=51% Similarity=0.961 Sum_probs=53.2
Q ss_pred EEeCcchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccce
Q 010469 438 IVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 503 (510)
Q Consensus 438 ~l~~~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~ 503 (510)
.++.++|.+.+.+.. +++|+||++||++|+.+.|.+.++++.+++..++.|+.+|++.+......
T Consensus 2 ~l~~~~~~~~i~~~~-~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 66 (101)
T cd02961 2 ELTDDNFDELVKDSK-DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSE 66 (101)
T ss_pred cccHHHHHHHHhCCC-cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHh
Confidence 366778888776554 99999999999999999999999999985334899999999985544443
No 168
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.76 E-value=2e-09 Score=93.26 Aligned_cols=102 Identities=31% Similarity=0.589 Sum_probs=92.1
Q ss_pred CcEEeChhcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEE
Q 010469 94 DVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (510)
Q Consensus 94 ~v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~ 173 (510)
.+..++++|+...+.. -+++.|+|||||.|+...|+|+..+.--.+ -+|.++.||.+.++-+.-+|-|...||++-
T Consensus 25 ~~~~~~eenw~~~l~g--ewmi~~~ap~~psc~~~~~~~~~~a~~s~d--L~v~va~VDvt~npgLsGRF~vtaLptIYH 100 (248)
T KOG0913|consen 25 KLTRIDEENWKELLTG--EWMIEFGAPWCPSCSDLIPHLENFATVSLD--LGVKVAKVDVTTNPGLSGRFLVTALPTIYH 100 (248)
T ss_pred eeEEecccchhhhhch--HHHHHhcCCCCccccchHHHHhccCCccCC--CceeEEEEEEEeccccceeeEEEecceEEE
Confidence 6788999999998753 579999999999999999999998876555 579999999999999999999999999999
Q ss_pred EeCCeeeeecCCCCHHHHHHHHHHHc
Q 010469 174 FVDGQHKAYNGGRTKDAIVTWIKKKI 199 (510)
Q Consensus 174 ~~~g~~~~y~g~~~~~~l~~~i~~~~ 199 (510)
.++|...+|.|.++...+.+|+...-
T Consensus 101 vkDGeFrrysgaRdk~dfisf~~~r~ 126 (248)
T KOG0913|consen 101 VKDGEFRRYSGARDKNDFISFEEHRE 126 (248)
T ss_pred eeccccccccCcccchhHHHHHHhhh
Confidence 99999999999999999999987654
No 169
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.75 E-value=1.4e-08 Score=79.56 Aligned_cols=55 Identities=18% Similarity=0.490 Sum_probs=47.7
Q ss_pred hhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCc
Q 010469 444 FDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH 500 (510)
Q Consensus 444 f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~ 500 (510)
++..+.+.+++++|+||++||+.|+.+.|.+.++++.+.+ ++.++.+|++.+...
T Consensus 5 ~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~--~v~~~~id~d~~~~l 59 (97)
T cd02949 5 LRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG--AVHFVEIDIDEDQEI 59 (97)
T ss_pred HHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC--ceEEEEEECCCCHHH
Confidence 4556677788999999999999999999999999999875 799999999876543
No 170
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.75 E-value=7.8e-09 Score=82.30 Aligned_cols=53 Identities=23% Similarity=0.503 Sum_probs=44.6
Q ss_pred chhhHhhccCCcEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCCcEEEEEEeCCCCc
Q 010469 443 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNE 498 (510)
Q Consensus 443 ~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~---~~~a~~~~~~~~~~~~~id~~~n~ 498 (510)
.|.+.+ ..+++++|+||++||++|+.+.+.+ .++++.+++ ++.++.+|++.++
T Consensus 3 ~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~ 58 (104)
T cd02953 3 ALAQAL-AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK--DVVLLRADWTKND 58 (104)
T ss_pred HHHHHH-HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC--CeEEEEEecCCCC
Confidence 456555 4578999999999999999999998 678888875 7999999998764
No 171
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=98.71 E-value=1e-07 Score=75.57 Aligned_cols=96 Identities=19% Similarity=0.317 Sum_probs=80.5
Q ss_pred cccccchhHHHHhccCC-CeEEEEEecCCCCcchHHHHHhc-cccCceeEEEcCChhHHHhhCCCCCCCCCeEEEec---
Q 010469 203 IYNITTLDEAERVLTSE-TKVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVK--- 277 (510)
Q Consensus 203 ~~~i~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~l~~~~~~~~~~~~p~l~~~~--- 277 (510)
+..+.+.++++.++... +.++|+||..........|..+| .++.++.|+++.+.++..++++.. |.+++|+
T Consensus 2 v~~i~s~~ele~f~~~~~~~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~t~~~~~~~~~~~~~----~~vvl~rp~~ 77 (107)
T cd03068 2 SKQLQTLKQVQEFLRDGDDVIIIGVFSGEEDPAYQLYQDAANSLREDYKFHHTFDSEIFKSLKVSP----GQLVVFQPEK 77 (107)
T ss_pred ceEcCCHHHHHHHHhcCCCEEEEEEECCCCCHHHHHHHHHHHhcccCCEEEEEChHHHHHhcCCCC----CceEEECcHH
Confidence 56788999999999887 89999999887777889998887 677999999999999999998874 8899994
Q ss_pred ---cCCCceeeccCCC-CCHHH-HHHHHHhc
Q 010469 278 ---KETEKISYFADGK-FDKST-IADFVFSN 303 (510)
Q Consensus 278 ---~~~~~~~~y~~g~-~~~~~-i~~fi~~~ 303 (510)
..+.....| .|. .+.++ |.+||..|
T Consensus 78 ~~~k~e~~~~~~-~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 78 FQSKYEPKSHVL-NKKDSTSEDELKDFFKEH 107 (107)
T ss_pred HhhhcCcceeee-eccccchHHHHHHHHhcC
Confidence 456677888 776 67655 99999864
No 172
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.69 E-value=4.2e-08 Score=79.44 Aligned_cols=80 Identities=19% Similarity=0.176 Sum_probs=50.5
Q ss_pred HHHHHhCCCeEEEEEECCCChHHhhhhHHHH---HHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEe-CC-
Q 010469 103 FSDVIENNKFVMVEFYAPWCGHCQALAPEYA---AAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFV-DG- 177 (510)
Q Consensus 103 ~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~---~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~-~g- 177 (510)
+....+++|+++|.|+++||++|+.+....- ++.+.++. ++..+.++.+....-....+ .++|+++|+. +|
T Consensus 16 l~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~---~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~ 91 (130)
T cd02960 16 LYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE---DFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLT 91 (130)
T ss_pred HHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh---CeEEEEEEeccCCCCcCccC-cccCeEEEECCCCC
Confidence 3344467899999999999999999988643 33434433 56666666542211111233 6799999996 66
Q ss_pred eeeeecCCC
Q 010469 178 QHKAYNGGR 186 (510)
Q Consensus 178 ~~~~y~g~~ 186 (510)
.+.+..|..
T Consensus 92 vi~~i~Gy~ 100 (130)
T cd02960 92 VRADITGRY 100 (130)
T ss_pred Ccccccccc
Confidence 334444443
No 173
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.66 E-value=1.9e-07 Score=92.97 Aligned_cols=96 Identities=27% Similarity=0.474 Sum_probs=77.5
Q ss_pred cHHHHHhCCC--eEEEEEECCCChHHhhhhHHHH-HHHHHHhhcCCCeEEEEEeCccc----HHHHHhCCCCcccEEEEE
Q 010469 102 NFSDVIENNK--FVMVEFYAPWCGHCQALAPEYA-AAATELKSANESVVLAKVDATEE----NELAHEYDVQGFPTIYFF 174 (510)
Q Consensus 102 ~~~~~~~~~~--~~~v~f~a~wC~~C~~~~p~~~-~~~~~~~~~~~~v~~~~vd~~~~----~~~~~~~~v~~~P~~~~~ 174 (510)
.+++.+.+++ +++|+|||+||-.||.+.+..- +.....+- .++...++|.+++ .++.+++|+-+.|++++|
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~--~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff 541 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL--QDVVLLQADVTANDPAITALLKRLGVFGVPTYLFF 541 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc--CCeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 7788887666 9999999999999999988654 33333333 3699999999865 467789999999999999
Q ss_pred e-CC-eeeeecCCCCHHHHHHHHHHHc
Q 010469 175 V-DG-QHKAYNGGRTKDAIVTWIKKKI 199 (510)
Q Consensus 175 ~-~g-~~~~y~g~~~~~~l~~~i~~~~ 199 (510)
. +| .+....|..+.+.+.+++++..
T Consensus 542 ~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 542 GPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred CCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 8 66 4456889999999999998753
No 174
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.65 E-value=2.1e-07 Score=78.49 Aligned_cols=84 Identities=23% Similarity=0.283 Sum_probs=64.4
Q ss_pred CCCeEEEEEE-CCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCccc---------------------HHHHHhCCCC
Q 010469 109 NNKFVMVEFY-APWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE---------------------NELAHEYDVQ 166 (510)
Q Consensus 109 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~---------------------~~~~~~~~v~ 166 (510)
.+++++|+|| +.||+.|....|.+.++++++.+. ++.++.|..+.. ..+.+.|++.
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 99 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL--GAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVW 99 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCc
Confidence 4789999999 589999999999999999999763 466666654322 3567778888
Q ss_pred cc---------cEEEEEe-CC-eeeeecCCCCHHHHHHH
Q 010469 167 GF---------PTIYFFV-DG-QHKAYNGGRTKDAIVTW 194 (510)
Q Consensus 167 ~~---------P~~~~~~-~g-~~~~y~g~~~~~~l~~~ 194 (510)
.. |++++++ +| ....+.|....+.+.+-
T Consensus 100 ~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~ 138 (140)
T cd03017 100 GEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEV 138 (140)
T ss_pred cccccccCCcceeEEEECCCCEEEEEEecCCccchHHHH
Confidence 87 8999996 67 44678888776666553
No 175
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.64 E-value=2.4e-07 Score=76.30 Aligned_cols=72 Identities=24% Similarity=0.540 Sum_probs=58.6
Q ss_pred CCCeEEEEEECC-CChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCccc---------------------HHHHHhCCCC
Q 010469 109 NNKFVMVEFYAP-WCGHCQALAPEYAAAATELKSANESVVLAKVDATEE---------------------NELAHEYDVQ 166 (510)
Q Consensus 109 ~~~~~~v~f~a~-wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~---------------------~~~~~~~~v~ 166 (510)
.+++++|.||++ ||++|+...+.|.++.++++.. ++.++.|..+.. ..+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~--~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 101 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK--GVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIE 101 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT--TEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCE
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccc--eEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCc
Confidence 678999999999 9999999999999999999863 588888876533 2567788888
Q ss_pred ------cccEEEEEeCCeeeee
Q 010469 167 ------GFPTIYFFVDGQHKAY 182 (510)
Q Consensus 167 ------~~P~~~~~~~g~~~~y 182 (510)
.+|+++++..+..++|
T Consensus 102 ~~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 102 DEKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp ETTTSEESEEEEEEETTSBEEE
T ss_pred cccCCceEeEEEEECCCCEEEe
Confidence 8999999985543333
No 176
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=3.4e-08 Score=86.45 Aligned_cols=60 Identities=25% Similarity=0.512 Sum_probs=51.0
Q ss_pred CcchhhHhhcc-CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccce
Q 010469 441 GNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 503 (510)
Q Consensus 441 ~~~f~~~v~~~-~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~ 503 (510)
...|+..+... .+.|+|.|+|.||+||+++.|.|..++..+. +.+|+++|++.-+..+..
T Consensus 9 d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp---~aVFlkVdVd~c~~taa~ 69 (288)
T KOG0908|consen 9 DSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP---GAVFLKVDVDECRGTAAT 69 (288)
T ss_pred cHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc---ccEEEEEeHHHhhchhhh
Confidence 34777777544 4799999999999999999999999999995 599999999987776665
No 177
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.63 E-value=5.6e-08 Score=79.17 Aligned_cols=57 Identities=16% Similarity=0.153 Sum_probs=46.0
Q ss_pred EEEeCcchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCc
Q 010469 437 KIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 498 (510)
Q Consensus 437 ~~l~~~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~ 498 (510)
..++...|.+.+. +++.++|+|+++||++|+.+.|.+.++++.. ++.++.+|++.+.
T Consensus 9 ~~it~~~~~~~i~-~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~----~~~~y~vdvd~~~ 65 (122)
T TIGR01295 9 EVTTVVRALEALD-KKETATFFIGRKTCPYCRKFSGTLSGVVAQT----KAPIYYIDSENNG 65 (122)
T ss_pred eecCHHHHHHHHH-cCCcEEEEEECCCChhHHHHhHHHHHHHHhc----CCcEEEEECCCcc
Confidence 4466667777664 4677999999999999999999999999972 4668888888664
No 178
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=6.4e-08 Score=82.72 Aligned_cols=84 Identities=18% Similarity=0.460 Sum_probs=71.6
Q ss_pred CcEEe-ChhcHHHHHhC--CCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCC----
Q 010469 94 DVVVL-KERNFSDVIEN--NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQ---- 166 (510)
Q Consensus 94 ~v~~l-~~~~~~~~~~~--~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~---- 166 (510)
.+..+ +++.+++.+.. .+.|+|.|||.|.+.|+.+.|.|.+++.+|.. ....|++||....++.+.+|+|+
T Consensus 125 ~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~--~~lkFGkvDiGrfpd~a~kfris~s~~ 202 (265)
T KOG0914|consen 125 TIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNN--NLLKFGKVDIGRFPDVAAKFRISLSPG 202 (265)
T ss_pred heeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCC--CCCcccceeeccCcChHHheeeccCcc
Confidence 35566 56666666643 46899999999999999999999999999987 46999999999999999999876
Q ss_pred --cccEEEEEeCCee
Q 010469 167 --GFPTIYFFVDGQH 179 (510)
Q Consensus 167 --~~P~~~~~~~g~~ 179 (510)
..||+++|.+|+.
T Consensus 203 srQLPT~ilFq~gkE 217 (265)
T KOG0914|consen 203 SRQLPTYILFQKGKE 217 (265)
T ss_pred cccCCeEEEEccchh
Confidence 6899999999943
No 179
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.58 E-value=2.8e-07 Score=75.06 Aligned_cols=66 Identities=39% Similarity=0.754 Sum_probs=59.9
Q ss_pred CCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCc-ccHHHHHhCC--CCcccEEEEEeCCe
Q 010469 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDAT-EENELAHEYD--VQGFPTIYFFVDGQ 178 (510)
Q Consensus 110 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~-~~~~~~~~~~--v~~~P~~~~~~~g~ 178 (510)
++++++.||++||++|+.+.|.+.++++.+.. .+.+..+|.. ..+.+...++ +..+|++.++.+|.
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 100 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG---DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGK 100 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC---CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcc
Confidence 77999999999999999999999999999876 6899999997 7889999999 89999999888873
No 180
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.56 E-value=2.1e-08 Score=98.29 Aligned_cols=78 Identities=32% Similarity=0.609 Sum_probs=69.1
Q ss_pred CCCceEEEeCcchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCc-EEEEEEeCCCCcCccceeEeeee
Q 010469 432 NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS-IVIAKMDGTTNEHHRAKVIFDVN 509 (510)
Q Consensus 432 ~~~~~~~l~~~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~-~~~~~id~~~n~~~~~~~~~~v~ 509 (510)
.+.+|..|+..+|...|..+.+-.+|.||++|||+|+++.|.|+++|+.+..+.. +.++.|||...........|||+
T Consensus 37 ~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~ 115 (606)
T KOG1731|consen 37 PDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVS 115 (606)
T ss_pred CCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCC
Confidence 3688999999999999998888999999999999999999999999999988765 77999999887777766667775
No 181
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.56 E-value=5.7e-08 Score=78.20 Aligned_cols=56 Identities=13% Similarity=0.177 Sum_probs=43.8
Q ss_pred hhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccce
Q 010469 444 FDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 503 (510)
Q Consensus 444 f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~ 503 (510)
|.+.+. ..+.++|+||++||++|+.+.|.+.+++... + .+.|..+|++.++....+
T Consensus 15 ~~~~l~-~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~--~i~~~~vd~d~~~~l~~~ 70 (113)
T cd02975 15 FFKEMK-NPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D--KLKLEIYDFDEDKEKAEK 70 (113)
T ss_pred HHHHhC-CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C--ceEEEEEeCCcCHHHHHH
Confidence 444443 3557999999999999999999999999876 3 699999999877544433
No 182
>smart00594 UAS UAS domain.
Probab=98.56 E-value=4.9e-07 Score=73.91 Aligned_cols=87 Identities=11% Similarity=0.263 Sum_probs=66.0
Q ss_pred HHhCCCeEEEEEECCCChHHhhhhHH-H--HHHHHHHhhcCCCeEEEEEeCc--ccHHHHHhCCCCcccEEEEEe-CC--
Q 010469 106 VIENNKFVMVEFYAPWCGHCQALAPE-Y--AAAATELKSANESVVLAKVDAT--EENELAHEYDVQGFPTIYFFV-DG-- 177 (510)
Q Consensus 106 ~~~~~~~~~v~f~a~wC~~C~~~~p~-~--~~~~~~~~~~~~~v~~~~vd~~--~~~~~~~~~~v~~~P~~~~~~-~g-- 177 (510)
...++|+++|+|+++||++|+.+... | .++.+.++. ++.+..+|.+ +..+++..|++.++|++.++. +|
T Consensus 23 Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~---~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~ 99 (122)
T smart00594 23 ASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE---NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQ 99 (122)
T ss_pred HHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc---CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCc
Confidence 34567899999999999999997764 2 233444444 6888777765 445789999999999999995 44
Q ss_pred e----eeeecCCCCHHHHHHHH
Q 010469 178 Q----HKAYNGGRTKDAIVTWI 195 (510)
Q Consensus 178 ~----~~~y~g~~~~~~l~~~i 195 (510)
. ..+..|..+.+.+..++
T Consensus 100 ~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 100 RVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred eeEEEeccccCCCCHHHHHHhh
Confidence 2 34678999999988775
No 183
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.56 E-value=6.3e-07 Score=77.80 Aligned_cols=66 Identities=15% Similarity=0.319 Sum_probs=51.5
Q ss_pred CCCeEEEEEECCC-ChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCccc-----------------------HHHHHhCC
Q 010469 109 NNKFVMVEFYAPW-CGHCQALAPEYAAAATELKSANESVVLAKVDATEE-----------------------NELAHEYD 164 (510)
Q Consensus 109 ~~~~~~v~f~a~w-C~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-----------------------~~~~~~~~ 164 (510)
.+++++|+||++| |++|..++|.|.++++++. ++.++.|.++.. ..+++.||
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~----~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~g 118 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD----NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYG 118 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC----CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhC
Confidence 5789999999999 9999999999999998873 466666665421 25677788
Q ss_pred CCccc---------EEEEEe-CCe
Q 010469 165 VQGFP---------TIYFFV-DGQ 178 (510)
Q Consensus 165 v~~~P---------~~~~~~-~g~ 178 (510)
+...| +++++. +|+
T Consensus 119 v~~~~~~~~g~~~r~tfvId~~G~ 142 (167)
T PRK00522 119 VAIAEGPLKGLLARAVFVLDENNK 142 (167)
T ss_pred CeecccccCCceeeEEEEECCCCe
Confidence 87766 888885 673
No 184
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.52 E-value=5e-07 Score=66.66 Aligned_cols=68 Identities=13% Similarity=0.371 Sum_probs=52.7
Q ss_pred EEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHH----HHHhCCCCcccEEEEEeCCeeeeecCCCCHH
Q 010469 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENE----LAHEYDVQGFPTIYFFVDGQHKAYNGGRTKD 189 (510)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~----~~~~~~v~~~P~~~~~~~g~~~~y~g~~~~~ 189 (510)
+..|+++||++|+...+.|.+. ++.+..+|.++++. +++.+++.++|++++. |+. ..| .+.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~---------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~--~~g-~~~~ 67 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK---------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI--IVG-FDPE 67 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC---------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE--Eee-CCHH
Confidence 5689999999999998888651 47788888877654 5567899999999874 543 555 5778
Q ss_pred HHHHHH
Q 010469 190 AIVTWI 195 (510)
Q Consensus 190 ~l~~~i 195 (510)
.|.+|+
T Consensus 68 ~i~~~i 73 (74)
T TIGR02196 68 KLDQLL 73 (74)
T ss_pred HHHHHh
Confidence 888876
No 185
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.52 E-value=1.8e-07 Score=75.72 Aligned_cols=48 Identities=25% Similarity=0.486 Sum_probs=35.9
Q ss_pred hccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCc
Q 010469 449 LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 498 (510)
Q Consensus 449 ~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~ 498 (510)
...+++|+|.|||+||++|+.|.|.+.+.+..... ...|+.+|++.++
T Consensus 16 ~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~--~~~fv~v~vd~~~ 63 (117)
T cd02959 16 KDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL--SHNFVMVNLEDDE 63 (117)
T ss_pred HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh--cCcEEEEEecCCC
Confidence 34578999999999999999999999998775543 2234445555554
No 186
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.51 E-value=3.1e-08 Score=88.67 Aligned_cols=56 Identities=27% Similarity=0.695 Sum_probs=46.7
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-CcEEEEEEeCCCCcCccceeEeeee
Q 010469 452 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEHHRAKVIFDVN 509 (510)
Q Consensus 452 ~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~-~~~~~~~id~~~n~~~~~~~~~~v~ 509 (510)
...|+|.||||||++|+++.|+|.+++..++.. ..++++++|++. .|+.+-+||||
T Consensus 43 ddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~--f~aiAnefgiq 99 (468)
T KOG4277|consen 43 DDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATR--FPAIANEFGIQ 99 (468)
T ss_pred CCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeeccccccc--chhhHhhhccC
Confidence 457999999999999999999999999999764 369999999885 45555557775
No 187
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.51 E-value=8.9e-07 Score=75.52 Aligned_cols=45 Identities=20% Similarity=0.260 Sum_probs=35.9
Q ss_pred CCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCccc
Q 010469 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE 156 (510)
Q Consensus 110 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~ 156 (510)
+..+++.||++||++|+.++|.|.++++++++ .++.++.|+.+..
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~--~~v~vv~V~~~~~ 68 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDA--LGVELVAVGPESP 68 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHh--cCeEEEEEeCCCH
Confidence 44555556799999999999999999999976 3588888876544
No 188
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.51 E-value=1.5e-06 Score=74.55 Aligned_cols=80 Identities=23% Similarity=0.358 Sum_probs=58.8
Q ss_pred CCCeEEEEEECC-CChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCccc---------------------HHHHHhCCCC
Q 010469 109 NNKFVMVEFYAP-WCGHCQALAPEYAAAATELKSANESVVLAKVDATEE---------------------NELAHEYDVQ 166 (510)
Q Consensus 109 ~~~~~~v~f~a~-wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~---------------------~~~~~~~~v~ 166 (510)
++++++|+||++ ||+.|....+.+.++++++++. ++.++.|..+.. ..+.+.|++.
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~--~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 106 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA--GVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVW 106 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCC
Confidence 578999999986 6888999999999999999873 477777765432 2456677775
Q ss_pred cc------------cEEEEEe-CC-eeeeecCCCCHHH
Q 010469 167 GF------------PTIYFFV-DG-QHKAYNGGRTKDA 190 (510)
Q Consensus 167 ~~------------P~~~~~~-~g-~~~~y~g~~~~~~ 190 (510)
.. |++++++ +| ....|.|....+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~ 144 (154)
T PRK09437 107 GEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNH 144 (154)
T ss_pred cccccccccccCcceEEEEECCCCEEEEEEcCCCcchh
Confidence 43 6777885 77 4457777655544
No 189
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.50 E-value=8.9e-08 Score=76.07 Aligned_cols=54 Identities=9% Similarity=0.126 Sum_probs=43.2
Q ss_pred eEEEeCcchhhHhhccCCcEEEEEeC--CCCh---hhhhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 010469 436 VKIVVGNNFDEIVLDESKDVLLEIYA--PWCG---HCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 496 (510)
Q Consensus 436 ~~~l~~~~f~~~v~~~~~~vlv~f~~--~~c~---~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~ 496 (510)
+..|+..||++.|. ..+.+||.||| |||+ +|+.+.|.+.+.+. .+.+|+|||+.
T Consensus 3 ~v~L~~~nF~~~v~-~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~------~v~lakVd~~d 61 (116)
T cd03007 3 CVDLDTVTFYKVIP-KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD------DLLVAEVGIKD 61 (116)
T ss_pred eeECChhhHHHHHh-cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC------ceEEEEEeccc
Confidence 56789999999884 45779999999 9999 77777777765543 49999999953
No 190
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.50 E-value=1.1e-06 Score=76.84 Aligned_cols=88 Identities=16% Similarity=0.312 Sum_probs=63.4
Q ss_pred CCCeEEEEEE-CCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCccc----------------------------HHH
Q 010469 109 NNKFVMVEFY-APWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE----------------------------NEL 159 (510)
Q Consensus 109 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~----------------------------~~~ 159 (510)
.+++++|+|| +.||++|....|.|.++++++.+. ++.++.|.++.. ..+
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~--~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 105 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL--NAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKI 105 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhH
Confidence 4689999999 899999999999999999999873 466666654321 234
Q ss_pred HHhCCCC------cccEEEEEe-CCe-eeeecC----CCCHHHHHHHHHHH
Q 010469 160 AHEYDVQ------GFPTIYFFV-DGQ-HKAYNG----GRTKDAIVTWIKKK 198 (510)
Q Consensus 160 ~~~~~v~------~~P~~~~~~-~g~-~~~y~g----~~~~~~l~~~i~~~ 198 (510)
.+.|++. ..|++++++ +|+ ...+.+ ..+.+.+.+.|+..
T Consensus 106 ~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 106 SRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 5567775 578999996 773 344533 23567777777654
No 191
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.49 E-value=1.4e-06 Score=75.98 Aligned_cols=128 Identities=9% Similarity=0.135 Sum_probs=78.0
Q ss_pred EEeChhcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcc--------c---HHHHH-hC
Q 010469 96 VVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE--------E---NELAH-EY 163 (510)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~--------~---~~~~~-~~ 163 (510)
..++++.+...--.++++||.|||+||++|+ ..|.|++++++|++ .++.++.+.|.. . .++|+ ++
T Consensus 11 ~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~--~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~ 87 (183)
T PRK10606 11 TTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWAD--QGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTW 87 (183)
T ss_pred ECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhh--CCeEEEEeeccccccCCCCCHHHHHHHHHHcc
Confidence 3344443332223579999999999999997 58999999999987 359999998842 1 24565 57
Q ss_pred CCCcccEEEEEe-CCeeeeecCCCCHHHHHHHHHHHcCCCc------------------ccccch-hHHHHhccCCCeEE
Q 010469 164 DVQGFPTIYFFV-DGQHKAYNGGRTKDAIVTWIKKKIGPGI------------------YNITTL-DEAERVLTSETKVV 223 (510)
Q Consensus 164 ~v~~~P~~~~~~-~g~~~~y~g~~~~~~l~~~i~~~~~~~~------------------~~i~~~-~~~~~~~~~~~~~~ 223 (510)
++. +|.+-=+. +|. ....+.+|+....+... ....+. =++.+|+-..+..+
T Consensus 88 g~~-Fpv~~k~dvnG~--------~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~v 158 (183)
T PRK10606 88 GVT-FPMFSKIEVNGE--------GRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQV 158 (183)
T ss_pred CCC-ceeEEEEccCCC--------CCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcE
Confidence 763 66543333 332 22346667766553110 000000 13556776667777
Q ss_pred EEEecCCCCcch
Q 010469 224 LGYLNSLVGSES 235 (510)
Q Consensus 224 v~~~~~~~~~~~ 235 (510)
|..|.....+..
T Consensus 159 v~r~~~~~~p~~ 170 (183)
T PRK10606 159 IQRFSPDMTPED 170 (183)
T ss_pred EEEECCCCCCCH
Confidence 777776555543
No 192
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.49 E-value=2.3e-07 Score=77.46 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=40.4
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCC------CcEEEEEEeCCCCc
Q 010469 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV------DSIVIAKMDGTTNE 498 (510)
Q Consensus 451 ~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~------~~~~~~~id~~~n~ 498 (510)
.+++++|+|||+||++|++++|.+.++.+.+++. +++.++.|+.+.+.
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~ 77 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSE 77 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCH
Confidence 3689999999999999999999999998877532 36899999977654
No 193
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.47 E-value=1.4e-06 Score=77.05 Aligned_cols=86 Identities=21% Similarity=0.271 Sum_probs=61.7
Q ss_pred CCCeEEEEEE-CCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcc-------------------------cHHHHHh
Q 010469 109 NNKFVMVEFY-APWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-------------------------ENELAHE 162 (510)
Q Consensus 109 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-------------------------~~~~~~~ 162 (510)
.+++++|+|| ++||++|..++|.|.++.+++++. ++.++.|.++. ...+++.
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~--gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~ 107 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL--GVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRN 107 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc--CCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHH
Confidence 5789999999 999999999999999999999864 35555555432 2256778
Q ss_pred CCCC------cccEEEEEe-CCee-eeecC----CCCHHHHHHHHH
Q 010469 163 YDVQ------GFPTIYFFV-DGQH-KAYNG----GRTKDAIVTWIK 196 (510)
Q Consensus 163 ~~v~------~~P~~~~~~-~g~~-~~y~g----~~~~~~l~~~i~ 196 (510)
|++. ..|+++++. +|++ ..+.+ ....+.+.+.|+
T Consensus 108 ~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~ 153 (187)
T TIGR03137 108 FGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIK 153 (187)
T ss_pred hCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 8876 469999996 7733 33322 236666666654
No 194
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.46 E-value=1.5e-07 Score=77.70 Aligned_cols=46 Identities=20% Similarity=0.398 Sum_probs=38.5
Q ss_pred ccC-CcEEEEEeCCCChhhhhhhHHHH---HHHHHhcCCCcEEEEEEeCCCC
Q 010469 450 DES-KDVLLEIYAPWCGHCQAFEPTYN---KLAKHLRGVDSIVIAKMDGTTN 497 (510)
Q Consensus 450 ~~~-~~vlv~f~~~~c~~C~~~~~~~~---~~a~~~~~~~~~~~~~id~~~n 497 (510)
+.+ ++++|+||++||++|+.++|.+. .+.+.+++ ++.++.+|++.+
T Consensus 11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~i~~d~~ 60 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA--HFVVVYINIDGD 60 (125)
T ss_pred HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh--heEEEEEEccCC
Confidence 445 89999999999999999999985 56666654 788999998865
No 195
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.44 E-value=4.1e-07 Score=70.30 Aligned_cols=55 Identities=31% Similarity=0.718 Sum_probs=45.4
Q ss_pred chhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCcc
Q 010469 443 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 501 (510)
Q Consensus 443 ~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~ 501 (510)
+|...+... ++++|+||++||++|+.+.+.+.++++. . .++.|+.+|++.+....
T Consensus 2 ~~~~~~~~~-~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~--~~~~~~~i~~~~~~~~~ 56 (93)
T cd02947 2 EFEELIKSA-KPVVVDFWAPWCGPCKAIAPVLEELAEE-Y--PKVKFVKVDVDENPELA 56 (93)
T ss_pred chHHHHhcC-CcEEEEEECCCChhHHHhhHHHHHHHHH-C--CCceEEEEECCCChhHH
Confidence 566666544 8899999999999999999999999988 3 47999999998755443
No 196
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.43 E-value=9.1e-07 Score=63.15 Aligned_cols=60 Identities=43% Similarity=0.798 Sum_probs=50.8
Q ss_pred EEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHH---hCCCCcccEEEEEeCC
Q 010469 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAH---EYDVQGFPTIYFFVDG 177 (510)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~---~~~v~~~P~~~~~~~g 177 (510)
++.||++||++|++..+.+.++ .... .++.+..++++....... .+++..+|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLN---KGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhC---CCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999998 3222 369999999998887665 7899999999999876
No 197
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.41 E-value=8.7e-06 Score=63.77 Aligned_cols=106 Identities=30% Similarity=0.524 Sum_probs=79.7
Q ss_pred CCcEEeChhcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCc-----ccHHHHHhCCC--
Q 010469 93 KDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDAT-----EENELAHEYDV-- 165 (510)
Q Consensus 93 ~~v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~-----~~~~~~~~~~v-- 165 (510)
...+.|+.-+|++++.+.+.++|.|=.. -|-=.-+..|.++|.+-.....++.++.|-.. ++.+|+++|++
T Consensus 4 ~G~v~LD~~tFdKvi~kf~~~LVKFD~a--yPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k 81 (126)
T PF07912_consen 4 KGCVPLDELTFDKVIPKFKYVLVKFDVA--YPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK 81 (126)
T ss_dssp TTSEEESTTHHHHHGGGSSEEEEEEEES--S--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred CceeeccceehhheeccCceEEEEEecc--CCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence 4578899999999999999999999532 33344557888999554443557999998765 45789999998
Q ss_pred CcccEEEEEeCC--eeeee--cCCCCHHHHHHHHHHHcC
Q 010469 166 QGFPTIYFFVDG--QHKAY--NGGRTKDAIVTWIKKKIG 200 (510)
Q Consensus 166 ~~~P~~~~~~~g--~~~~y--~g~~~~~~l~~~i~~~~~ 200 (510)
..+|.+++|..| .+++| .|..+.+.|.+|+....+
T Consensus 82 e~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 82 EDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp CC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred ccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 579999999855 67888 899999999999998764
No 198
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.39 E-value=8.9e-07 Score=69.07 Aligned_cols=46 Identities=26% Similarity=0.491 Sum_probs=38.8
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCC
Q 010469 452 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497 (510)
Q Consensus 452 ~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n 497 (510)
+++++|+|||+||++|++..|.+.++.+.++...++.|+.|.++.+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~ 46 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDED 46 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSS
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCC
Confidence 5789999999999999999999999999998445899998888744
No 199
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.36 E-value=2.4e-06 Score=72.28 Aligned_cols=72 Identities=13% Similarity=0.228 Sum_probs=52.9
Q ss_pred CCCeEEEEEECCC-ChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCccc-----------------------HHHHHhCC
Q 010469 109 NNKFVMVEFYAPW-CGHCQALAPEYAAAATELKSANESVVLAKVDATEE-----------------------NELAHEYD 164 (510)
Q Consensus 109 ~~~~~~v~f~a~w-C~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-----------------------~~~~~~~~ 164 (510)
.+++++|+||++| |++|+.++|.|.+++++++ ++.++.|+.+.. ..+++.|+
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~----~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~g 100 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD----NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYG 100 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC----CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhC
Confidence 5789999999999 6999999999999999874 367777766421 34556677
Q ss_pred CCc------ccEEEEEe-CCee-eeecC
Q 010469 165 VQG------FPTIYFFV-DGQH-KAYNG 184 (510)
Q Consensus 165 v~~------~P~~~~~~-~g~~-~~y~g 184 (510)
+.. .|+++++. +|++ ..+.|
T Consensus 101 v~~~~~~~~~~~~~iid~~G~I~~~~~~ 128 (143)
T cd03014 101 VLIKDLGLLARAVFVIDENGKVIYVELV 128 (143)
T ss_pred CeeccCCccceEEEEEcCCCeEEEEEEC
Confidence 653 68888886 7733 34443
No 200
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.34 E-value=1.9e-06 Score=72.84 Aligned_cols=46 Identities=22% Similarity=0.329 Sum_probs=38.4
Q ss_pred CCCeEEEEEECCCChH-HhhhhHHHHHHHHHHhhcC-CCeEEEEEeCc
Q 010469 109 NNKFVMVEFYAPWCGH-CQALAPEYAAAATELKSAN-ESVVLAKVDAT 154 (510)
Q Consensus 109 ~~~~~~v~f~a~wC~~-C~~~~p~~~~~~~~~~~~~-~~v~~~~vd~~ 154 (510)
.+++++|.||++||++ |....+.+.++++++++.+ .++.++.|..+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 6789999999999998 9999999999999997743 24777777653
No 201
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.34 E-value=5.6e-05 Score=68.59 Aligned_cols=251 Identities=16% Similarity=0.220 Sum_probs=159.7
Q ss_pred hHHHHhccCCCeEEEEEecCCCC---cchHHHHHhc-cc-----cCceeEEEcC---ChhHHHhhCCCCCCCCCeEEEec
Q 010469 210 DEAERVLTSETKVVLGYLNSLVG---SESEVLADAS-RL-----EDDVNFYQTT---NPDVAKIFHLDSKVNRPALVMVK 277 (510)
Q Consensus 210 ~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~-~~-----~~~~~f~~~~---~~~l~~~~~~~~~~~~p~l~~~~ 277 (510)
++++..+.++..++|.|+.+++. .....|.++| ++ ..++.++.+. ...++.+|.+.. .|++-+|+
T Consensus 4 ~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~K---yPTlKvfr 80 (375)
T KOG0912|consen 4 ENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINK---YPTLKVFR 80 (375)
T ss_pred ccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhcccc---Cceeeeee
Confidence 56777888889999999999984 3556677765 33 2556677654 457999999985 89999999
Q ss_pred cCCCceeeccCCCCCHHHHHHHHHhcCCCceeecCCCc-hhhhccCCccceEEEEEeccchhhHHHHHHHHHHhccCceE
Q 010469 278 KETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTREN-APSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLI 356 (510)
Q Consensus 278 ~~~~~~~~y~~g~~~~~~i~~fi~~~~~p~~~~lt~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~A~~~~~~~~ 356 (510)
.+.--.-.| .|..+.+.+.+||++..-..+.++..-+ +..+. .+.+..++.+....+... .+.++++|.-++.+..
T Consensus 81 nG~~~~rEY-Rg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~-~p~K~~vIgyF~~kdspe-y~~~~kva~~lr~dc~ 157 (375)
T KOG0912|consen 81 NGEMMKREY-RGQRSVEALIEFIEKQLSDPINEFESLDQLQNLD-IPSKRTVIGYFPSKDSPE-YDNLRKVASLLRDDCV 157 (375)
T ss_pred ccchhhhhh-ccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhh-ccccceEEEEeccCCCch-HHHHHHHHHHHhhccE
Confidence 887555678 9999999999999987766676665533 33333 323344554555444433 3468889998888766
Q ss_pred EEEEEcCCcccccchhhhcCCCCCCCcEEEEeeCCCCCc-ccCCC-CCCHHHHHHHHHHhhcCcccccccCCCCCCCCCC
Q 010469 357 FVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKK-HILDG-ELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDG 434 (510)
Q Consensus 357 f~~vd~~~~~~~~~l~~~~gi~~~~~P~~~i~~~~~~~~-y~~~~-~~t~e~i~~Fi~~~~~Gkl~~~~kSe~~p~~~~~ 434 (510)
|. |-..+ +. ....+...+. .+++++.... -.|.| .-+.+.+.+||++=- -+
T Consensus 158 f~-V~~gD------~~--~~~~~~~~~~-~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKc-----------------vp 210 (375)
T KOG0912|consen 158 FL-VGFGD------LL--KPHEPPGKNI-LVFDPDHSEPNHEFLGSMTNFDELKQWIQDKC-----------------VP 210 (375)
T ss_pred EE-eeccc------cc--cCCCCCCCce-EEeCCCcCCcCcccccccccHHHHHHHHHhcc-----------------hh
Confidence 53 32211 00 0111222343 3454443222 24556 456788999998722 23
Q ss_pred ceEEEeCcchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCC-cEEEEEEeCCC
Q 010469 435 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD-SIVIAKMDGTT 496 (510)
Q Consensus 435 ~~~~l~~~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~-~~~~~~id~~~ 496 (510)
.|+++|-+|-++++ +.+.|.+++|+.+---.. ..-.-..+++.+.+.+ .|.+...|+..
T Consensus 211 LVREiTFeN~EELt-EEGlPflILf~~kdD~~s--~k~F~~aI~ReL~~e~~~in~l~ADG~~ 270 (375)
T KOG0912|consen 211 LVREITFENAEELT-EEGLPFLILFRKKDDKES--EKIFKNAIARELDDETLAINFLTADGKV 270 (375)
T ss_pred hhhhhhhccHHHHh-hcCCceEEEEecCCcccH--HHHHHHHHHHHhhhhhhccceeecCcce
Confidence 46778888877655 568899999998764433 2222344555554422 36666666553
No 202
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.34 E-value=2.5e-06 Score=63.51 Aligned_cols=69 Identities=20% Similarity=0.377 Sum_probs=47.8
Q ss_pred EEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHh-----CCCCcccEEEEEeCCeeeeecCCCCH
Q 010469 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHE-----YDVQGFPTIYFFVDGQHKAYNGGRTK 188 (510)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~-----~~v~~~P~~~~~~~g~~~~y~g~~~~ 188 (510)
++.||++||++|++..+.|.++ ++.+-.+|.++++..... +++.++|++ ++.+|... ...+.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~---------~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l---~~~~~ 68 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL---------GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFL---TNPSA 68 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc---------CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEe---cCCCH
Confidence 6789999999999999988654 245556787777655544 388999997 57777432 23344
Q ss_pred HHHHHHH
Q 010469 189 DAIVTWI 195 (510)
Q Consensus 189 ~~l~~~i 195 (510)
..+.+.+
T Consensus 69 ~~~~~~l 75 (77)
T TIGR02200 69 AQVKAKL 75 (77)
T ss_pred HHHHHHh
Confidence 5555444
No 203
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.34 E-value=4.6e-06 Score=74.69 Aligned_cols=89 Identities=19% Similarity=0.315 Sum_probs=64.2
Q ss_pred CCCeEEE-EEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcc---------------------------cHHHH
Q 010469 109 NNKFVMV-EFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE---------------------------ENELA 160 (510)
Q Consensus 109 ~~~~~~v-~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~---------------------------~~~~~ 160 (510)
.+++++| .||++||+.|..+++.|.++++++++. ++.++.|.++. +.+++
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~--~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia 103 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL--GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELA 103 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHH
Confidence 4666554 689999999999999999999999874 45556655442 23567
Q ss_pred HhCCCC------cccEEEEEe-CCeee-ee----cCCCCHHHHHHHHHHHc
Q 010469 161 HEYDVQ------GFPTIYFFV-DGQHK-AY----NGGRTKDAIVTWIKKKI 199 (510)
Q Consensus 161 ~~~~v~------~~P~~~~~~-~g~~~-~y----~g~~~~~~l~~~i~~~~ 199 (510)
+.||+. .+|+++++. +|++. .. .+.++.+++.+.|+...
T Consensus 104 ~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 104 REYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred HHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 778874 589999996 66332 22 35578888888887643
No 204
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.33 E-value=6.2e-07 Score=67.77 Aligned_cols=50 Identities=14% Similarity=0.316 Sum_probs=41.1
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccceeEeee
Q 010469 455 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKVIFDV 508 (510)
Q Consensus 455 vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~~~~~v 508 (510)
.+..||++||++|+.+.|.+.++++.++. .+.++.+|++.+.....+ +||
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~vd~~~~~~~~~~--~~v 51 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD--AVEVEYINVMENPQKAME--YGI 51 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC--ceEEEEEeCccCHHHHHH--cCC
Confidence 46689999999999999999999998875 689999998876654443 554
No 205
>PTZ00062 glutaredoxin; Provisional
Probab=98.32 E-value=7.1e-07 Score=78.91 Aligned_cols=52 Identities=10% Similarity=0.121 Sum_probs=44.6
Q ss_pred CcchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 010469 441 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 495 (510)
Q Consensus 441 ~~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~ 495 (510)
.+.|.+.+......++++|||+||++|+.|.|++.++++.+. .+.|++||++
T Consensus 6 ~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~---~~~F~~V~~d 57 (204)
T PTZ00062 6 KEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP---SLEFYVVNLA 57 (204)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC---CcEEEEEccc
Confidence 456777765444679999999999999999999999999885 5999999987
No 206
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.30 E-value=5.6e-06 Score=72.75 Aligned_cols=87 Identities=20% Similarity=0.295 Sum_probs=63.5
Q ss_pred CCCeEEEEEE-CCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcc-------------------------cHHHHHh
Q 010469 109 NNKFVMVEFY-APWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-------------------------ENELAHE 162 (510)
Q Consensus 109 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-------------------------~~~~~~~ 162 (510)
.+++++|+|| +.||+.|..+++.|.+.++++.+. ++.++.|..+. +..+++.
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~--g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ 107 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL--GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRN 107 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC--CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHH
Confidence 5679999999 999999999999999999999763 35555555432 3467788
Q ss_pred CCC----Ccc--cEEEEEe-CCee-eee----cCCCCHHHHHHHHHH
Q 010469 163 YDV----QGF--PTIYFFV-DGQH-KAY----NGGRTKDAIVTWIKK 197 (510)
Q Consensus 163 ~~v----~~~--P~~~~~~-~g~~-~~y----~g~~~~~~l~~~i~~ 197 (510)
|++ .+. |++++++ +|++ ..+ ...++.+++.+.+..
T Consensus 108 ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~a 154 (187)
T PRK10382 108 FDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA 154 (187)
T ss_pred cCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHh
Confidence 888 356 9999997 7733 222 223577777777744
No 207
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.29 E-value=6.4e-06 Score=70.24 Aligned_cols=73 Identities=16% Similarity=0.257 Sum_probs=52.1
Q ss_pred CeEEEEEE-CCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcc---------------------c--HHHHHhCCCC
Q 010469 111 KFVMVEFY-APWCGHCQALAPEYAAAATELKSANESVVLAKVDATE---------------------E--NELAHEYDVQ 166 (510)
Q Consensus 111 ~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~---------------------~--~~~~~~~~v~ 166 (510)
++++|.|| ++||+.|....|.+.++++++++. ++.++.|+.+. . ..+.+.|++.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~ 106 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAA--GAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVF 106 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC--CCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCc
Confidence 78888887 999999999999999999999763 46666665432 1 3456667766
Q ss_pred c----c--cEEEEEe-CC-eeeeecCC
Q 010469 167 G----F--PTIYFFV-DG-QHKAYNGG 185 (510)
Q Consensus 167 ~----~--P~~~~~~-~g-~~~~y~g~ 185 (510)
. . |++++++ +| ....+.|.
T Consensus 107 ~~~~~~~~~~~~lid~~G~v~~~~~~~ 133 (149)
T cd03018 107 DEDLGVAERAVFVIDRDGIIRYAWVSD 133 (149)
T ss_pred cccCCCccceEEEECCCCEEEEEEecC
Confidence 2 2 3777885 67 33455554
No 208
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.29 E-value=6.8e-06 Score=73.92 Aligned_cols=83 Identities=22% Similarity=0.305 Sum_probs=64.8
Q ss_pred CCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCc---------ccHHHHHhCCCCcccEEEEEeCC--e
Q 010469 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDAT---------EENELAHEYDVQGFPTIYFFVDG--Q 178 (510)
Q Consensus 110 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~---------~~~~~~~~~~v~~~P~~~~~~~g--~ 178 (510)
++..|+.||.+.|+.|+.+.|.+..+++++.- .|..+.+|.. .+..++++++|..+|+++++..+ .
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~---~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYGF---SVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK 196 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhCC---EEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe
Confidence 67889999999999999999999999998822 3444444421 35788999999999999999743 3
Q ss_pred e-eeecCCCCHHHHHHHH
Q 010469 179 H-KAYNGGRTKDAIVTWI 195 (510)
Q Consensus 179 ~-~~y~g~~~~~~l~~~i 195 (510)
. ..-.|..+.+.|.+-|
T Consensus 197 ~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 197 WYPVSQGFMSLDELEDRI 214 (215)
T ss_pred EEEEeeecCCHHHHHHhh
Confidence 3 3456889988887643
No 209
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.29 E-value=4.7e-06 Score=70.18 Aligned_cols=76 Identities=18% Similarity=0.240 Sum_probs=54.6
Q ss_pred CCCeEEEEEE-CCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCccc----------------------HHHHHhCCC
Q 010469 109 NNKFVMVEFY-APWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE----------------------NELAHEYDV 165 (510)
Q Consensus 109 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~----------------------~~~~~~~~v 165 (510)
.+++++|.|| +.||++|....|.+.+++++++.. ++.++.|..+.. ..+.+.+++
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~ 98 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG--GAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGV 98 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCC
Confidence 6789999999 789999999999999999999653 466766665422 245556666
Q ss_pred Cccc---------EEEEEe-CC-eeeeecCCC
Q 010469 166 QGFP---------TIYFFV-DG-QHKAYNGGR 186 (510)
Q Consensus 166 ~~~P---------~~~~~~-~g-~~~~y~g~~ 186 (510)
...| ++++++ +| ....+.|..
T Consensus 99 ~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~ 130 (140)
T cd02971 99 LIEKSAGGGLAARATFIIDPDGKIRYVEVEPL 130 (140)
T ss_pred ccccccccCceeEEEEEECCCCcEEEEEecCC
Confidence 6554 677776 56 344566554
No 210
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.28 E-value=5.3e-06 Score=76.70 Aligned_cols=101 Identities=18% Similarity=0.378 Sum_probs=72.7
Q ss_pred CCcEEeC-hhcHHHHHhC---CCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcc
Q 010469 93 KDVVVLK-ERNFSDVIEN---NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGF 168 (510)
Q Consensus 93 ~~v~~l~-~~~~~~~~~~---~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~ 168 (510)
+.|.+++ ++.|-+.+.+ +..|||+||.+.++.|..+...|..||.+|.. +.|+.|.....+ +...|.+..+
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a~~~~-~~~~f~~~~L 199 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRASKCP-ASENFPDKNL 199 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEECGCC-TTTTS-TTC-
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEehhccC-cccCCcccCC
Confidence 5688885 5778887743 45799999999999999999999999999976 999999887655 6788999999
Q ss_pred cEEEEEeCCe-eeeecC-------CCCHHHHHHHHHHH
Q 010469 169 PTIYFFVDGQ-HKAYNG-------GRTKDAIVTWIKKK 198 (510)
Q Consensus 169 P~~~~~~~g~-~~~y~g-------~~~~~~l~~~i~~~ 198 (510)
|++++|++|. ...+.| ..+.+.|..||.++
T Consensus 200 PtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 200 PTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred CEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 9999999993 344443 23445666666543
No 211
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.27 E-value=1.7e-06 Score=72.01 Aligned_cols=47 Identities=28% Similarity=0.498 Sum_probs=39.2
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-CcEEEEEEeCCCC
Q 010469 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTN 497 (510)
Q Consensus 451 ~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~-~~~~~~~id~~~n 497 (510)
.++.++|+||++||++|+.++|.++++++.+++. .++.++.++++.+
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~ 63 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRS 63 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCC
Confidence 3689999999999999999999999999988753 3577777776654
No 212
>PRK15000 peroxidase; Provisional
Probab=98.23 E-value=1.2e-05 Score=71.78 Aligned_cols=87 Identities=16% Similarity=0.302 Sum_probs=64.3
Q ss_pred CCCeEEEEEECC-CChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCccc----------------------------HHH
Q 010469 109 NNKFVMVEFYAP-WCGHCQALAPEYAAAATELKSANESVVLAKVDATEE----------------------------NEL 159 (510)
Q Consensus 109 ~~~~~~v~f~a~-wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~----------------------------~~~ 159 (510)
++++++|+||+. ||+.|..+++.|.+.++++++. ++.++.|.++.. .++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~--g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~i 110 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR--GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREI 110 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHH
Confidence 578999999995 9999999999999999999874 466666655421 245
Q ss_pred HHhCCCC------cccEEEEEe-CCee-eeecC----CCCHHHHHHHHHH
Q 010469 160 AHEYDVQ------GFPTIYFFV-DGQH-KAYNG----GRTKDAIVTWIKK 197 (510)
Q Consensus 160 ~~~~~v~------~~P~~~~~~-~g~~-~~y~g----~~~~~~l~~~i~~ 197 (510)
++.|++. .+|+++++. +|++ ..+.| .++.+++.+.++.
T Consensus 111 a~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 111 QKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 6678876 689999997 7733 33333 3566777777754
No 213
>PHA02125 thioredoxin-like protein
Probab=98.23 E-value=9.5e-07 Score=65.30 Aligned_cols=36 Identities=17% Similarity=0.486 Sum_probs=28.9
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcC
Q 010469 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 499 (510)
Q Consensus 456 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~ 499 (510)
+++||++||++|+.+.|.+.+++ +.++++|++.+..
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~--------~~~~~vd~~~~~~ 37 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE--------YTYVDVDTDEGVE 37 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh--------heEEeeeCCCCHH
Confidence 78999999999999999997652 4577888766543
No 214
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.20 E-value=3.5e-06 Score=71.20 Aligned_cols=86 Identities=20% Similarity=0.344 Sum_probs=75.3
Q ss_pred cEEeC-hhcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEE
Q 010469 95 VVVLK-ERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (510)
Q Consensus 95 v~~l~-~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~ 173 (510)
..++. +..|-+...++.-|+++||.+.-..|+-+...|+.+|+.+-+ ..|+.||....|-++.+++|..+|++.+
T Consensus 68 y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e----TrFikvnae~~PFlv~kL~IkVLP~v~l 143 (211)
T KOG1672|consen 68 YEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE----TRFIKVNAEKAPFLVTKLNIKVLPTVAL 143 (211)
T ss_pred EEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc----ceEEEEecccCceeeeeeeeeEeeeEEE
Confidence 44444 778888888888999999999999999999999999998765 8999999999999999999999999999
Q ss_pred EeCCeee-eecC
Q 010469 174 FVDGQHK-AYNG 184 (510)
Q Consensus 174 ~~~g~~~-~y~g 184 (510)
|.+|+.. .+.|
T Consensus 144 ~k~g~~~D~iVG 155 (211)
T KOG1672|consen 144 FKNGKTVDYVVG 155 (211)
T ss_pred EEcCEEEEEEee
Confidence 9999554 4444
No 215
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.20 E-value=3e-06 Score=70.50 Aligned_cols=47 Identities=28% Similarity=0.499 Sum_probs=38.5
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-CcEEEEEEeCCCC
Q 010469 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTN 497 (510)
Q Consensus 451 ~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~-~~~~~~~id~~~n 497 (510)
.++++||+||++||++|+.+.|.+.++.+.+... .++.++.++++.+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~ 64 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRD 64 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCC
Confidence 3679999999999999999999999999888652 3566776776655
No 216
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.17 E-value=1.8e-05 Score=58.54 Aligned_cols=72 Identities=22% Similarity=0.493 Sum_probs=54.5
Q ss_pred EEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCCeeeeecC-CCCHHHHHHH
Q 010469 116 EFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQHKAYNG-GRTKDAIVTW 194 (510)
Q Consensus 116 ~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~y~g-~~~~~~l~~~ 194 (510)
.+++++|+.|......+.+++..+ ++.+-.+|..+.+++ .+|||.++|++++ ||+ ..+.| ..+.+.+.+|
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~-----~i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~-~~~~G~~p~~~el~~~ 74 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEEL-----GIEVEIIDIEDFEEI-EKYGVMSVPALVI--NGK-VVFVGRVPSKEELKEL 74 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHT-----TEEEEEEETTTHHHH-HHTT-SSSSEEEE--TTE-EEEESS--HHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhc-----CCeEEEEEccCHHHH-HHcCCCCCCEEEE--CCE-EEEEecCCCHHHHHHH
Confidence 346888999999999999998876 255566677666777 9999999999944 664 56888 7777999988
Q ss_pred HH
Q 010469 195 IK 196 (510)
Q Consensus 195 i~ 196 (510)
|+
T Consensus 75 l~ 76 (76)
T PF13192_consen 75 LE 76 (76)
T ss_dssp HH
T ss_pred hC
Confidence 74
No 217
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.16 E-value=2.1e-06 Score=61.94 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=35.6
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCc
Q 010469 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH 500 (510)
Q Consensus 456 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~ 500 (510)
++.|+++||++|+.+.+.+.+++.... ++.+..+|++.+...
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~---~i~~~~id~~~~~~l 44 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP---NISAEMIDAAEFPDL 44 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC---ceEEEEEEcccCHhH
Confidence 678999999999999999999987543 699999999877543
No 218
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.13 E-value=4.1e-06 Score=70.89 Aligned_cols=42 Identities=14% Similarity=0.395 Sum_probs=32.9
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCC
Q 010469 452 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497 (510)
Q Consensus 452 ~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n 497 (510)
++..+|+|||+||++|++++|.+.+++++++ +.+..|+++..
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~----~~Vi~Vs~d~~ 91 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG----LPVYAFSLDGQ 91 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC----CcEEEEEeCCC
Confidence 4567999999999999999999999998874 34444555443
No 219
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.13 E-value=2.7e-05 Score=69.88 Aligned_cols=85 Identities=18% Similarity=0.221 Sum_probs=59.9
Q ss_pred eEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcc---------------------------cHHHHHhCC
Q 010469 112 FVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE---------------------------ENELAHEYD 164 (510)
Q Consensus 112 ~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~---------------------------~~~~~~~~~ 164 (510)
.+|+.||++||+.|..+++.|.++++++++. ++.++.|.++. +..+++.||
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~--gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg 105 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKR--NVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLG 105 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHc--CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcC
Confidence 4566899999999999999999999999874 46666666543 135677788
Q ss_pred CC--------cccEEEEEe-CCee-eeecC----CCCHHHHHHHHHHH
Q 010469 165 VQ--------GFPTIYFFV-DGQH-KAYNG----GRTKDAIVTWIKKK 198 (510)
Q Consensus 165 v~--------~~P~~~~~~-~g~~-~~y~g----~~~~~~l~~~i~~~ 198 (510)
+. ..|++++++ +|++ ..+.+ .++.+++.+.|..+
T Consensus 106 ~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 106 MIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred CccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 65 245688886 6633 33333 35667777777553
No 220
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.12 E-value=6.4e-06 Score=66.96 Aligned_cols=49 Identities=24% Similarity=0.341 Sum_probs=39.6
Q ss_pred hccCCcEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCCcEEEEEEeCCCCcC
Q 010469 449 LDESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH 499 (510)
Q Consensus 449 ~~~~~~vlv~f~~~~c~~C~~~~~~~---~~~a~~~~~~~~~~~~~id~~~n~~ 499 (510)
...+++|+|+|+++||++|+.|.+.. .++++.+.. +++++++|++.+..
T Consensus 12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~--~fv~VkvD~~~~~~ 63 (124)
T cd02955 12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE--NFVPIKVDREERPD 63 (124)
T ss_pred HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC--CEEEEEEeCCcCcH
Confidence 45678999999999999999998844 466777654 79999999987643
No 221
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=98.11 E-value=2.5e-05 Score=59.02 Aligned_cols=109 Identities=20% Similarity=0.284 Sum_probs=81.8
Q ss_pred CceeecCCCchhhhccCCcc-ceEEEEEec--cchhhHHHHHHHHHHhccC--ceEEEEEEcCCcccccc-hhhhcCCCC
Q 010469 306 PLVTIFTRENAPSVFESPIK-NQLLLFAVS--NDSEKLLPVFEEAAKSFKG--KLIFVYVQMDNEDVGKP-VSEYFGITG 379 (510)
Q Consensus 306 p~~~~lt~~~~~~~~~~~~~-~~~v~~~~~--~~~~~~~~~~~~~A~~~~~--~~~f~~vd~~~~~~~~~-l~~~~gi~~ 379 (510)
|.+++++++++.++...... .+++.|... .+.-+++..++++|+.+.. ++.|+|+|.++.+.... ..+.|||+-
T Consensus 1 ptlrkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl 80 (120)
T cd03074 1 PTLRKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDL 80 (120)
T ss_pred CchhhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCccc
Confidence 56778888888877766533 567788876 4566789999999999875 59999999988653333 356889976
Q ss_pred CCCcEEEEeeCC--CCCcccCCC---CCCHHHHHHHHHHhh
Q 010469 380 EAPKVLAYTGND--DAKKHILDG---ELTLDKIKTFGEDFL 415 (510)
Q Consensus 380 ~~~P~~~i~~~~--~~~~y~~~~---~~t~e~i~~Fi~~~~ 415 (510)
. .|.+.+++.. .+..+.+++ ..|.+.|+.||++++
T Consensus 81 ~-~PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 81 F-RPQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred C-CCceeeEecccccceeEecccccccCcHHHHHHHHHhhC
Confidence 5 5887777654 356666754 388999999999875
No 222
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=3.4e-05 Score=67.27 Aligned_cols=79 Identities=20% Similarity=0.370 Sum_probs=67.9
Q ss_pred HHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCC-eeeeecC
Q 010469 106 VIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG-QHKAYNG 184 (510)
Q Consensus 106 ~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g-~~~~y~g 184 (510)
...+.+..+++||++||.+|.++...+..+++..+ ++.++.++.+..++++..+.+...|.+.++..| ...+..|
T Consensus 13 ~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~----~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~ 88 (227)
T KOG0911|consen 13 LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK----NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSG 88 (227)
T ss_pred HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh----hheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhc
Confidence 33467889999999999999999999999999883 599999999999999999999999999999888 4445555
Q ss_pred CCCH
Q 010469 185 GRTK 188 (510)
Q Consensus 185 ~~~~ 188 (510)
....
T Consensus 89 ~~~~ 92 (227)
T KOG0911|consen 89 ADPP 92 (227)
T ss_pred cCcH
Confidence 5444
No 223
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.09 E-value=5.4e-06 Score=67.05 Aligned_cols=40 Identities=18% Similarity=0.335 Sum_probs=33.2
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEE
Q 010469 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM 492 (510)
Q Consensus 451 ~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~i 492 (510)
.+++++|+||++||++|+.+.|.+.++++.+.. ++.++.+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~--~~~vi~v 59 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD--WLDVVLA 59 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC--CcEEEEE
Confidence 368999999999999999999999999887755 4554444
No 224
>PRK13189 peroxiredoxin; Provisional
Probab=98.07 E-value=3.7e-05 Score=69.82 Aligned_cols=88 Identities=17% Similarity=0.276 Sum_probs=61.8
Q ss_pred CCC-eEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcc---------------------------cHHHH
Q 010469 109 NNK-FVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE---------------------------ENELA 160 (510)
Q Consensus 109 ~~~-~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~---------------------------~~~~~ 160 (510)
.++ .+|+.||++||+.|..+.+.|.++++++++. ++.++.|.++. +..++
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~--~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia 111 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL--NTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIA 111 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHH
Confidence 456 4556889999999999999999999999874 45555555442 12566
Q ss_pred HhCCCC-------cccEEEEEe-CCee-eeec----CCCCHHHHHHHHHHH
Q 010469 161 HEYDVQ-------GFPTIYFFV-DGQH-KAYN----GGRTKDAIVTWIKKK 198 (510)
Q Consensus 161 ~~~~v~-------~~P~~~~~~-~g~~-~~y~----g~~~~~~l~~~i~~~ 198 (510)
+.||+. .+|++++++ +|++ ..+. ..++.+++.+.|+..
T Consensus 112 ~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 112 KKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred HHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 778765 478999997 7733 2222 445677777777654
No 225
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.07 E-value=4e-06 Score=63.24 Aligned_cols=48 Identities=27% Similarity=0.543 Sum_probs=39.3
Q ss_pred hccCCcEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCCcEEEEEEeCCCCc
Q 010469 449 LDESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNE 498 (510)
Q Consensus 449 ~~~~~~vlv~f~~~~c~~C~~~~~~~---~~~a~~~~~~~~~~~~~id~~~n~ 498 (510)
...+++++|+|+++||++|+.|...+ .++.+.+.. +++++++|.+.++
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~--~fv~v~vd~~~~~ 64 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK--NFVLVKVDVDDED 64 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH--CSEEEEEETTTHH
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC--CEEEEEEEcCCCC
Confidence 34579999999999999999999998 555564554 7999999996554
No 226
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.06 E-value=3.7e-05 Score=70.86 Aligned_cols=87 Identities=13% Similarity=0.241 Sum_probs=62.0
Q ss_pred CCCeEEEEEE-CCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcc----------------------------cHHH
Q 010469 109 NNKFVMVEFY-APWCGHCQALAPEYAAAATELKSANESVVLAKVDATE----------------------------ENEL 159 (510)
Q Consensus 109 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~~ 159 (510)
+++++++.|| +.||++|..+++.|.+.++++++.+ +.++.|.++. +..+
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g--v~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~i 174 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG--VKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREV 174 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHH
Confidence 4567777777 8999999999999999999998744 5555554432 1357
Q ss_pred HHhCCCC-----cccEEEEEe-CCee-eee----cCCCCHHHHHHHHHH
Q 010469 160 AHEYDVQ-----GFPTIYFFV-DGQH-KAY----NGGRTKDAIVTWIKK 197 (510)
Q Consensus 160 ~~~~~v~-----~~P~~~~~~-~g~~-~~y----~g~~~~~~l~~~i~~ 197 (510)
++.||+. ..|++++++ +|++ ..+ ...++.+++.+.|..
T Consensus 175 akayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~a 223 (261)
T PTZ00137 175 SKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDA 223 (261)
T ss_pred HHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 7788875 589999997 7733 222 234577777776653
No 227
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.06 E-value=6.2e-06 Score=61.00 Aligned_cols=36 Identities=25% Similarity=0.411 Sum_probs=32.3
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEe
Q 010469 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 493 (510)
Q Consensus 456 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id 493 (510)
.|.||++||++|+.+.|.+.++++.+.. .+.|.++|
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~--~~~~~~v~ 37 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI--DAEFEKVT 37 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC--CeEEEEeC
Confidence 3789999999999999999999999875 68888887
No 228
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.04 E-value=8.8e-06 Score=61.69 Aligned_cols=58 Identities=21% Similarity=0.404 Sum_probs=43.6
Q ss_pred EEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccH-----HHHHhCCCCcccEEEEEeCCe
Q 010469 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN-----ELAHEYDVQGFPTIYFFVDGQ 178 (510)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-----~~~~~~~v~~~P~~~~~~~g~ 178 (510)
++.|+++||++|+...+.|.++. ... .+.+..||.+++. .+.+..++.++|++ |.+|.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~---~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~ 63 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP---AYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGK 63 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC---CCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCE
Confidence 47899999999999999999875 222 3778888776543 25666799999998 34564
No 229
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.02 E-value=5.7e-05 Score=68.12 Aligned_cols=88 Identities=18% Similarity=0.297 Sum_probs=62.9
Q ss_pred CCCe-EEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCccc---------------------------HHHH
Q 010469 109 NNKF-VMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE---------------------------NELA 160 (510)
Q Consensus 109 ~~~~-~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~---------------------------~~~~ 160 (510)
.+++ +|+.||++||+.|..+++.|.++++++++. ++.++.|.++.. .+++
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~--gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va 104 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL--NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVS 104 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHH
Confidence 3555 478999999999999999999999999874 466666665531 2566
Q ss_pred HhCCCC-------cccEEEEEe-CCee-ee--ec--CCCCHHHHHHHHHHH
Q 010469 161 HEYDVQ-------GFPTIYFFV-DGQH-KA--YN--GGRTKDAIVTWIKKK 198 (510)
Q Consensus 161 ~~~~v~-------~~P~~~~~~-~g~~-~~--y~--g~~~~~~l~~~i~~~ 198 (510)
+.||+. ..|+++++. +|++ .. |. ..+..+++.+.|...
T Consensus 105 ~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 105 NQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred HHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 778863 589999997 6733 22 22 235677777777643
No 230
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.02 E-value=2.8e-05 Score=63.77 Aligned_cols=75 Identities=25% Similarity=0.484 Sum_probs=48.6
Q ss_pred CCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhC---CCCcccEEEEEe-CCeeeeecCC
Q 010469 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEY---DVQGFPTIYFFV-DGQHKAYNGG 185 (510)
Q Consensus 110 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~---~v~~~P~~~~~~-~g~~~~y~g~ 185 (510)
.+..++-|..+|||.|....|.+.++++... ++.+--+-.++++++..+| |.+.+|++++++ +|.....-|+
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p----~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~wge 116 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEANP----NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRWGE 116 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T----TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEES
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhCC----CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEEcC
Confidence 4567888999999999999999999998753 3555555556777776655 688999999996 4566655566
Q ss_pred CCH
Q 010469 186 RTK 188 (510)
Q Consensus 186 ~~~ 188 (510)
+..
T Consensus 117 rP~ 119 (129)
T PF14595_consen 117 RPK 119 (129)
T ss_dssp S-H
T ss_pred CCH
Confidence 553
No 231
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.01 E-value=6.6e-05 Score=68.73 Aligned_cols=85 Identities=19% Similarity=0.253 Sum_probs=66.8
Q ss_pred CCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCccc-----------HHHHHhCCCCcccEEEEEeCC-
Q 010469 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE-----------NELAHEYDVQGFPTIYFFVDG- 177 (510)
Q Consensus 110 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-----------~~~~~~~~v~~~P~~~~~~~g- 177 (510)
++..|+.||.+.|++|+++.|.+..+++++ ++.+..|+.+.. ...++++||..+|+++++..+
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~y-----gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t 224 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEY-----GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKS 224 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHh-----CCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCC
Confidence 468999999999999999999999999987 344544544432 457889999999999999744
Q ss_pred -eee-eecCCCCHHHHHHHHHHHc
Q 010469 178 -QHK-AYNGGRTKDAIVTWIKKKI 199 (510)
Q Consensus 178 -~~~-~y~g~~~~~~l~~~i~~~~ 199 (510)
... .-.|..+.++|.+-+...+
T Consensus 225 ~~~~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 225 QKMSPLAYGFISQDELKERILNVL 248 (256)
T ss_pred CcEEEEeeccCCHHHHHHHHHHHH
Confidence 333 4569999999987776654
No 232
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.00 E-value=1.1e-05 Score=71.29 Aligned_cols=43 Identities=30% Similarity=0.626 Sum_probs=35.1
Q ss_pred ccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCC
Q 010469 450 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497 (510)
Q Consensus 450 ~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n 497 (510)
..+++++|+||++||++|++++|.+.++++. ++.++.|+.+.+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~-----~~~vi~v~~~~~ 108 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDD 108 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc-----CCEEEEEECCCC
Confidence 3578999999999999999999999988641 467777876544
No 233
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.99 E-value=0.00011 Score=59.17 Aligned_cols=89 Identities=7% Similarity=0.152 Sum_probs=67.3
Q ss_pred HhCCCeEEEEEECC----CChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCccc--HHHHHhCCCCcccEEEEEe--CC-
Q 010469 107 IENNKFVMVEFYAP----WCGHCQALAPEYAAAATELKSANESVVLAKVDATEE--NELAHEYDVQGFPTIYFFV--DG- 177 (510)
Q Consensus 107 ~~~~~~~~v~f~a~----wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~--~~~~~~~~v~~~P~~~~~~--~g- 177 (510)
-++.|+++|++|++ ||..|+..... .++.+-++. ++.+...|.+.. .+++..++++++|++.++. ++
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~---~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~ 89 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINT---RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNR 89 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHc---CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCc
Confidence 35689999999999 99999775421 223333433 688888887643 4688999999999999993 33
Q ss_pred --eeeeecCCCCHHHHHHHHHHHc
Q 010469 178 --QHKAYNGGRTKDAIVTWIKKKI 199 (510)
Q Consensus 178 --~~~~y~g~~~~~~l~~~i~~~~ 199 (510)
...+..|..+++++...++...
T Consensus 90 ~~vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 90 MTIVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred eEEEEEEeCCCCHHHHHHHHHHHH
Confidence 3458899999999999988765
No 234
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.97 E-value=4.9e-05 Score=64.03 Aligned_cols=81 Identities=22% Similarity=0.473 Sum_probs=55.7
Q ss_pred EEeChhcHHHHHhCCCeEEEEEECCCChHHhhhhH-HH--HHHHHHHhhcCCCeEEEEEeCcccHHHHHhC--------C
Q 010469 96 VVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAP-EY--AAAATELKSANESVVLAKVDATEENELAHEY--------D 164 (510)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p-~~--~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~--------~ 164 (510)
...+.+.++..-+.+|+++|.++++||..|+.+.. .| .++++.++. ++.-+.||.++.+++...| +
T Consensus 23 ~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~---~FI~VkvDree~Pdid~~y~~~~~~~~~ 99 (163)
T PF03190_consen 23 QPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR---NFIPVKVDREERPDIDKIYMNAVQAMSG 99 (163)
T ss_dssp B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH---H-EEEEEETTT-HHHHHHHHHHHHHHHS
T ss_pred ccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC---CEEEEEeccccCccHHHHHHHHHHHhcC
Confidence 34456778888888999999999999999998775 33 356666766 6888999999999988777 7
Q ss_pred CCcccEEEEEe-CCee
Q 010469 165 VQGFPTIYFFV-DGQH 179 (510)
Q Consensus 165 v~~~P~~~~~~-~g~~ 179 (510)
..|+|+.++.. +|++
T Consensus 100 ~gGwPl~vfltPdg~p 115 (163)
T PF03190_consen 100 SGGWPLTVFLTPDGKP 115 (163)
T ss_dssp ---SSEEEEE-TTS-E
T ss_pred CCCCCceEEECCCCCe
Confidence 88999999996 6644
No 235
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.97 E-value=6.6e-05 Score=67.74 Aligned_cols=88 Identities=14% Similarity=0.211 Sum_probs=61.8
Q ss_pred CCCeEE-EEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCccc---------------------------HHHH
Q 010469 109 NNKFVM-VEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE---------------------------NELA 160 (510)
Q Consensus 109 ~~~~~~-v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~---------------------------~~~~ 160 (510)
.+++++ +.||++||+.|..+++.|.++++++++. ++.++.|.++.. .+++
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~--g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia 109 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL--NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVA 109 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHH
Confidence 455554 5889999999999999999999999874 466666655422 2556
Q ss_pred HhCCCC-------cccEEEEEe-CCee-eee--c--CCCCHHHHHHHHHHH
Q 010469 161 HEYDVQ-------GFPTIYFFV-DGQH-KAY--N--GGRTKDAIVTWIKKK 198 (510)
Q Consensus 161 ~~~~v~-------~~P~~~~~~-~g~~-~~y--~--g~~~~~~l~~~i~~~ 198 (510)
+.||+. ..|++++++ +|++ ..+ . ..++.+++.+.|+..
T Consensus 110 ~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 110 KRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred HHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 677763 479999996 6733 222 2 335778888887654
No 236
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=97.96 E-value=6.5e-06 Score=85.56 Aligned_cols=58 Identities=28% Similarity=0.570 Sum_probs=45.4
Q ss_pred eCcchhhHhhc---cCCcEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCCcEEEEEEeCCCCcCc
Q 010469 440 VGNNFDEIVLD---ESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEHH 500 (510)
Q Consensus 440 ~~~~f~~~v~~---~~~~vlv~f~~~~c~~C~~~~~~~---~~~a~~~~~~~~~~~~~id~~~n~~~ 500 (510)
+.++|++.+.. .+++|+|+|||+||++|+.+.+.+ .++.+.++ ++.++++|+++|+..
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~---~~~~v~vDvt~~~~~ 522 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA---DTVLLQADVTANNAE 522 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc---CCEEEEEECCCCChh
Confidence 34567776642 368999999999999999999876 56667665 488999999987543
No 237
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=97.96 E-value=2.4e-05 Score=78.98 Aligned_cols=46 Identities=22% Similarity=0.392 Sum_probs=38.4
Q ss_pred hhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeC
Q 010469 448 VLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 494 (510)
Q Consensus 448 v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~ 494 (510)
..+.+++|||+|||+||++|+.++|.+.++++.++. .++.|+.|..
T Consensus 52 ~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~-~~v~VI~Vs~ 97 (521)
T PRK14018 52 YLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKF-SSANLITVAS 97 (521)
T ss_pred eccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhcc-CCeEEEEEec
Confidence 344678999999999999999999999999998864 3577776654
No 238
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.96 E-value=4.6e-05 Score=60.85 Aligned_cols=74 Identities=20% Similarity=0.466 Sum_probs=49.0
Q ss_pred hcHHHHH----hCCCeEEEEEECC-------CChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccH-------HHHH-
Q 010469 101 RNFSDVI----ENNKFVMVEFYAP-------WCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN-------ELAH- 161 (510)
Q Consensus 101 ~~~~~~~----~~~~~~~v~f~a~-------wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-------~~~~- 161 (510)
++|.+.+ .++++++|.|+++ |||.|++..|.+.++.....+ +..++.|...+.+ .+..
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~---~~~lv~v~VG~r~~Wkdp~n~fR~~ 82 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE---NARLVYVEVGDRPEWKDPNNPFRTD 82 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST---TEEEEEEE---HHHHC-TTSHHHH-
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC---CceEEEEEcCCHHHhCCCCCCceEc
Confidence 3455554 3458999999864 999999999999998887544 5777777664332 2333
Q ss_pred -hCCCCcccEEEEEeCC
Q 010469 162 -EYDVQGFPTIYFFVDG 177 (510)
Q Consensus 162 -~~~v~~~P~~~~~~~g 177 (510)
++++.++||++-+..+
T Consensus 83 p~~~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 83 PDLKLKGIPTLIRWETG 99 (119)
T ss_dssp -CC---SSSEEEECTSS
T ss_pred ceeeeeecceEEEECCC
Confidence 5899999999998766
No 239
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=97.94 E-value=2.1e-05 Score=65.02 Aligned_cols=40 Identities=28% Similarity=0.574 Sum_probs=34.2
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 010469 452 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 495 (510)
Q Consensus 452 ~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~ 495 (510)
+++++|+||++||++|+++.|.+.++++.. ++.++.++.+
T Consensus 25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~----~~~vv~v~~~ 64 (127)
T cd03010 25 GKPYLLNVWASWCAPCREEHPVLMALARQG----RVPIYGINYK 64 (127)
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHhc----CcEEEEEECC
Confidence 689999999999999999999999998764 3777777754
No 240
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=6.4e-05 Score=68.68 Aligned_cols=112 Identities=17% Similarity=0.343 Sum_probs=87.1
Q ss_pred CCCCcEEeChhcHHHHHhCC---CeEEEEEECC----CChHHhhhhHHHHHHHHHHhhc-----CCCeEEEEEeCcccHH
Q 010469 91 DDKDVVVLKERNFSDVIENN---KFVMVEFYAP----WCGHCQALAPEYAAAATELKSA-----NESVVLAKVDATEENE 158 (510)
Q Consensus 91 ~~~~v~~l~~~~~~~~~~~~---~~~~v~f~a~----wC~~C~~~~p~~~~~~~~~~~~-----~~~v~~~~vd~~~~~~ 158 (510)
++..|..+++++|...+... -..+|+|.|. .|.-|+.+..++.-++..+... +.++-|+.||.++.++
T Consensus 38 s~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~ 117 (331)
T KOG2603|consen 38 SESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ 117 (331)
T ss_pred CCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH
Confidence 34579999999999988643 2478888875 6999999999999999987654 2368899999999999
Q ss_pred HHHhCCCCcccEEEEEeC--C------eeeeecCCCCHHHHHHHHHHHcCCC
Q 010469 159 LAHEYDVQGFPTIYFFVD--G------QHKAYNGGRTKDAIVTWIKKKIGPG 202 (510)
Q Consensus 159 ~~~~~~v~~~P~~~~~~~--g------~~~~y~g~~~~~~l~~~i~~~~~~~ 202 (510)
+-+.+++...|++++|.+ | ....++-....|.+.+|+.....-.
T Consensus 118 ~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~ 169 (331)
T KOG2603|consen 118 VFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVN 169 (331)
T ss_pred HHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhhe
Confidence 999999999999999943 2 1122222334799999998776433
No 241
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.91 E-value=0.00078 Score=70.50 Aligned_cols=177 Identities=15% Similarity=0.152 Sum_probs=126.9
Q ss_pred CCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEe-CC--eeeeecCCC
Q 010469 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFV-DG--QHKAYNGGR 186 (510)
Q Consensus 110 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~-~g--~~~~y~g~~ 186 (510)
+++.++.|+.+.|..|......++++++ +.+ ++.+...|..++.+++++|++...|++.+++ +| ..++|.|-.
T Consensus 366 ~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~---~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P 441 (555)
T TIGR03143 366 NPVTLLLFLDGSNEKSAELQSFLGEFAS-LSE---KLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVP 441 (555)
T ss_pred CCEEEEEEECCCchhhHHHHHHHHHHHh-cCC---cEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecC
Confidence 4557888999999999999999998884 444 6888888988899999999999999999995 55 348999998
Q ss_pred CHHHHHHHHHHHcCC--CcccccchhHHHHhccCC-CeEEEEEecCCCCcchHHHHH---hccccCceeEEE---cCChh
Q 010469 187 TKDAIVTWIKKKIGP--GIYNITTLDEAERVLTSE-TKVVLGYLNSLVGSESEVLAD---ASRLEDDVNFYQ---TTNPD 257 (510)
Q Consensus 187 ~~~~l~~~i~~~~~~--~~~~i~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~---~~~~~~~~~f~~---~~~~~ 257 (510)
.-.++..||...+.- ....+ +.+..+.+..-+ +..+-+|+...+......... ++....++.... ...++
T Consensus 442 ~G~Ef~s~i~~i~~~~~~~~~l-~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~ 520 (555)
T TIGR03143 442 SGHELNSFILALYNAAGPGQPL-GEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPD 520 (555)
T ss_pred ccHhHHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHH
Confidence 889999998877632 23333 434444444333 344556778888777665543 333333454433 35578
Q ss_pred HHHhhCCCCCCCCCeEEEeccCCCceeeccCCCCCHHHHHHHH
Q 010469 258 VAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFV 300 (510)
Q Consensus 258 l~~~~~~~~~~~~p~l~~~~~~~~~~~~y~~g~~~~~~i~~fi 300 (510)
++++|++.. -|++++= + ...+ .|..+.++|..||
T Consensus 521 ~~~~~~v~~---vP~~~i~---~--~~~~-~G~~~~~~~~~~~ 554 (555)
T TIGR03143 521 LKDEYGIMS---VPAIVVD---D--QQVY-FGKKTIEEMLELI 554 (555)
T ss_pred HHHhCCcee---cCEEEEC---C--EEEE-eeCCCHHHHHHhh
Confidence 999999986 7998862 2 2345 6777888998886
No 242
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.90 E-value=2.3e-05 Score=69.95 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=38.9
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 010469 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 495 (510)
Q Consensus 451 ~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~ 495 (510)
.+++|||.|||+||++|+..+|.+.++.+.+++ .++.++.|+++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~-~g~~vvgv~~~ 81 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNP-LGLEILAFPTS 81 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhc-CceEEEEecch
Confidence 368999999999999999999999999999975 46888888864
No 243
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=97.88 E-value=2.4e-05 Score=64.51 Aligned_cols=43 Identities=23% Similarity=0.463 Sum_probs=38.2
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeC
Q 010469 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 494 (510)
Q Consensus 451 ~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~ 494 (510)
.+++++|+||++||++|...+|.+.++.+.+++ .++.++.|+.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~-~~~~vi~i~~ 64 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD-DGLVVIGVHS 64 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc-CCeEEEEecc
Confidence 468999999999999999999999999999986 5688888865
No 244
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.87 E-value=0.00011 Score=55.76 Aligned_cols=76 Identities=24% Similarity=0.363 Sum_probs=54.7
Q ss_pred EEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccH----HHHHhCC--CCcccEEEEEeCCeeeeecCCC
Q 010469 113 VMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN----ELAHEYD--VQGFPTIYFFVDGQHKAYNGGR 186 (510)
Q Consensus 113 ~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~----~~~~~~~--v~~~P~~~~~~~g~~~~y~g~~ 186 (510)
-++.|+.+||++|++....|+++..++. ++.+..+|.+.++ ++.+..+ +..+|+++ .+|+.+ |
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~----~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~i---g-- 70 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD----DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHI---G-- 70 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc----CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEE---c--
Confidence 3788999999999999999999987653 4777777776643 4544444 57899975 466432 2
Q ss_pred CHHHHHHHHHHHc
Q 010469 187 TKDAIVTWIKKKI 199 (510)
Q Consensus 187 ~~~~l~~~i~~~~ 199 (510)
..+.+.++++..+
T Consensus 71 g~~~~~~~~~~~~ 83 (85)
T PRK11200 71 GCTDFEAYVKENL 83 (85)
T ss_pred CHHHHHHHHHHhc
Confidence 3467777777655
No 245
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.85 E-value=0.00019 Score=64.24 Aligned_cols=87 Identities=14% Similarity=0.331 Sum_probs=61.0
Q ss_pred CCCeEEEEEEC-CCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCccc----------------------------HHH
Q 010469 109 NNKFVMVEFYA-PWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE----------------------------NEL 159 (510)
Q Consensus 109 ~~~~~~v~f~a-~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~----------------------------~~~ 159 (510)
.+++++|+||+ .||+.|..+.+.|.+++++++.. ++.++.|+++.. .++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~--g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~i 112 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL--NCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSI 112 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc--CCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHH
Confidence 46799999995 88999999999999999999874 466666665422 246
Q ss_pred HHhCCCC------cccEEEEEe-CCee-eeec----CCCCHHHHHHHHHH
Q 010469 160 AHEYDVQ------GFPTIYFFV-DGQH-KAYN----GGRTKDAIVTWIKK 197 (510)
Q Consensus 160 ~~~~~v~------~~P~~~~~~-~g~~-~~y~----g~~~~~~l~~~i~~ 197 (510)
++.||+. .+|++++++ +|+. ..+. ..++.+++.+.|..
T Consensus 113 a~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a 162 (199)
T PTZ00253 113 ARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEA 162 (199)
T ss_pred HHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHh
Confidence 6778875 478999997 6632 2222 23455556655543
No 246
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.84 E-value=0.00012 Score=66.57 Aligned_cols=87 Identities=17% Similarity=0.133 Sum_probs=66.5
Q ss_pred CCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcc---------cHHHHHhCCCCcccEEEEEeCC--e
Q 010469 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE---------ENELAHEYDVQGFPTIYFFVDG--Q 178 (510)
Q Consensus 110 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~---------~~~~~~~~~v~~~P~~~~~~~g--~ 178 (510)
++..|++||.+.|++|+++.|.+..+++++.- .+..+.+|..- +...+.+++|..+|+++++..+ .
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~---~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~ 219 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL---SVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGS 219 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCC---eEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCc
Confidence 46889999999999999999999999998733 45555555422 2345678999999999999744 3
Q ss_pred ee-eecCCCCHHHHHHHHHHHc
Q 010469 179 HK-AYNGGRTKDAIVTWIKKKI 199 (510)
Q Consensus 179 ~~-~y~g~~~~~~l~~~i~~~~ 199 (510)
.. .-.|..+.++|.+-+....
T Consensus 220 ~~pv~~G~iS~deL~~Ri~~v~ 241 (248)
T PRK13703 220 VRPLSYGFITQDDLAKRFLNVS 241 (248)
T ss_pred EEEEeeccCCHHHHHHHHHHHH
Confidence 33 4568999999987776554
No 247
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.84 E-value=0.00018 Score=57.44 Aligned_cols=101 Identities=11% Similarity=0.034 Sum_probs=80.9
Q ss_pred cEEeChhcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHH---HhhcCCCeEEEEEeCcccHHHHHhCCCCc--cc
Q 010469 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATE---LKSANESVVLAKVDATEENELAHEYDVQG--FP 169 (510)
Q Consensus 95 v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~---~~~~~~~v~~~~vd~~~~~~~~~~~~v~~--~P 169 (510)
|.+++.++...+...+.+..+.|+. -..-....+.+.++|++ +++ ++.|+.+|.++.....+.+|+.. +|
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f~--~~~~~~~~~~~~~vAk~~~~~kg---ki~Fv~~d~~~~~~~~~~fgl~~~~~P 75 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFHD--KDDLESLKEFKQAVARQLISEKG---AINFLTADGDKFRHPLLHLGKTPADLP 75 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEec--chHHHHHHHHHHHHHHHHHhcCc---eEEEEEEechHhhhHHHHcCCCHhHCC
Confidence 3567888888888887777667772 23346788999999999 777 79999999999888899999997 89
Q ss_pred EEEEEeCC--eeee-ecCCCCHHHHHHHHHHHcC
Q 010469 170 TIYFFVDG--QHKA-YNGGRTKDAIVTWIKKKIG 200 (510)
Q Consensus 170 ~~~~~~~g--~~~~-y~g~~~~~~l~~~i~~~~~ 200 (510)
.+.+.... ..+. +.+..+.+.|.+|++..+.
T Consensus 76 ~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 76 VIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 99998633 4454 6788999999999998764
No 248
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=97.84 E-value=3.7e-05 Score=61.93 Aligned_cols=45 Identities=29% Similarity=0.616 Sum_probs=40.4
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCC
Q 010469 452 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497 (510)
Q Consensus 452 ~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n 497 (510)
+++++|+||++||++|+...+.+.++.+.+.. .++.++.++++.+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~~v~~d~~ 63 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKD-DGVEVVGVNVDDD 63 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCC-CCeEEEEEECCCC
Confidence 67999999999999999999999999998863 4799999998875
No 249
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.83 E-value=0.00015 Score=56.52 Aligned_cols=87 Identities=17% Similarity=0.338 Sum_probs=70.4
Q ss_pred hcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCC--e
Q 010469 101 RNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG--Q 178 (510)
Q Consensus 101 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g--~ 178 (510)
+.++..+...++++|-|+..+|. .....|.++|..+++ .+.|+.+. ++++.+++++. -|++++|++. .
T Consensus 8 ~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~---~~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~~~ 77 (97)
T cd02981 8 EELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRD---DYGFGHTS---DKEVAKKLKVK-PGSVVLFKPFEEE 77 (97)
T ss_pred HHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhccc---CCeEEEEC---hHHHHHHcCCC-CCceEEeCCcccC
Confidence 34556677889999999999998 467889999999876 58888776 46777778775 5999999764 5
Q ss_pred eeeecCCCCHHHHHHHHHH
Q 010469 179 HKAYNGGRTKDAIVTWIKK 197 (510)
Q Consensus 179 ~~~y~g~~~~~~l~~~i~~ 197 (510)
...|.|..+.+.|.+||..
T Consensus 78 ~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 78 PVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred CccCCCCCCHHHHHHHHHh
Confidence 5679999999999999864
No 250
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.83 E-value=3.1e-05 Score=66.20 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=37.4
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 010469 452 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 495 (510)
Q Consensus 452 ~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~ 495 (510)
+++|+|+||++||+ |+..+|.++++.+.+++ .++.++.|+++
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~-~~~~vv~v~~~ 63 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKD-RGLVVLGFPCN 63 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcC-CCEEEEEeccC
Confidence 68999999999999 99999999999999975 46888888764
No 251
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.82 E-value=4.9e-05 Score=61.74 Aligned_cols=51 Identities=14% Similarity=0.286 Sum_probs=38.6
Q ss_pred chhhHh---hccCCcEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCCcEEEEEEeCC
Q 010469 443 NFDEIV---LDESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGT 495 (510)
Q Consensus 443 ~f~~~v---~~~~~~vlv~f~~~~c~~C~~~~~~~---~~~a~~~~~~~~~~~~~id~~ 495 (510)
+|++.+ ...+++++|+|++.||++|+.|...+ .++.+.++. +++.+.+|.+
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~--~Fv~V~l~~d 67 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE--DFIMLNLVHE 67 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh--CeEEEEEEec
Confidence 555554 34578999999999999999999987 455566654 5776677765
No 252
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=2.8e-05 Score=66.91 Aligned_cols=74 Identities=19% Similarity=0.299 Sum_probs=58.5
Q ss_pred CCceEEE-eCcchhhHhhcc-CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccceeEeeee
Q 010469 433 DGDVKIV-VGNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKVIFDVN 509 (510)
Q Consensus 433 ~~~~~~l-~~~~f~~~v~~~-~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~~~~~v~ 509 (510)
.+.++.+ .++.+++.+..+ ...|+|.|+|.|.+.|..+.|.|.+++..+.+ +.+.|+++|+..=.. .+.+|+|.
T Consensus 123 pe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~-~~lkFGkvDiGrfpd--~a~kfris 198 (265)
T KOG0914|consen 123 PETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNN-NLLKFGKVDIGRFPD--VAAKFRIS 198 (265)
T ss_pred chheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCC-CCCcccceeeccCcC--hHHheeec
Confidence 4567777 666677666544 45799999999999999999999999999987 789999999885444 44446664
No 253
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.78 E-value=4e-05 Score=65.54 Aligned_cols=42 Identities=17% Similarity=0.156 Sum_probs=38.0
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeC
Q 010469 452 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 494 (510)
Q Consensus 452 ~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~ 494 (510)
++++||.||++||++|+..+|.+.++.+.+++ .++.++.|++
T Consensus 22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~-~~~~v~~i~~ 63 (153)
T TIGR02540 22 GKVSLVVNVASECGFTDQNYRALQELHRELGP-SHFNVLAFPC 63 (153)
T ss_pred CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh-CCeEEEEEec
Confidence 67899999999999999999999999999975 4788888886
No 254
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.77 E-value=4.2e-05 Score=71.53 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=35.8
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCc
Q 010469 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 498 (510)
Q Consensus 451 ~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~ 498 (510)
.++.+||+||++||++|+.+.|.+.++++.++ +.+..|+++.+.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg----~~Vi~VsvD~~~ 208 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG----IEVLPVSVDGGP 208 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC----cEEEEEeCCCCc
Confidence 36789999999999999999999999999874 455555655543
No 255
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=97.76 E-value=4.3e-05 Score=64.85 Aligned_cols=47 Identities=19% Similarity=0.535 Sum_probs=38.6
Q ss_pred cCCcEEEEEeCC-CChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCc
Q 010469 451 ESKDVLLEIYAP-WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 498 (510)
Q Consensus 451 ~~~~vlv~f~~~-~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~ 498 (510)
.+++++|.||++ ||++|+..+|.+.++.+.++. .++.++.+..+.+.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~-~~v~~v~v~~~~~~ 74 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKD-KGVDVVGVSSDDDP 74 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT-TTCEEEEEEESSSH
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhcc-CceEEEEecccCCH
Confidence 478999999999 999999999999999888765 35777777655443
No 256
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.00011 Score=57.01 Aligned_cols=73 Identities=22% Similarity=0.445 Sum_probs=55.3
Q ss_pred hcHHHHH---hCCCeEEEEEEC--------CCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccH-------HHHHh
Q 010469 101 RNFSDVI---ENNKFVMVEFYA--------PWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN-------ELAHE 162 (510)
Q Consensus 101 ~~~~~~~---~~~~~~~v~f~a--------~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-------~~~~~ 162 (510)
+.|++.+ .+++.++|+|++ +|||.|.+..|.+.++.+.... ++.|+.|+..+-+ .+...
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~---~~~~v~v~VG~rp~Wk~p~n~FR~d 89 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE---DVHFVHVYVGNRPYWKDPANPFRKD 89 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC---ceEEEEEEecCCCcccCCCCccccC
Confidence 4566555 356669999997 5999999999999998885544 7999999876543 34455
Q ss_pred CCC-CcccEEEEEeC
Q 010469 163 YDV-QGFPTIYFFVD 176 (510)
Q Consensus 163 ~~v-~~~P~~~~~~~ 176 (510)
.++ .++||++=+.+
T Consensus 90 ~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 90 PGILTAVPTLLRWKR 104 (128)
T ss_pred CCceeecceeeEEcC
Confidence 566 89999987764
No 257
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.75 E-value=5.4e-05 Score=66.21 Aligned_cols=40 Identities=40% Similarity=0.744 Sum_probs=33.1
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 010469 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 495 (510)
Q Consensus 451 ~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~ 495 (510)
.+++++|+||++||++|+.+.|.+.++++. ++.++.++.+
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~ 101 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYK 101 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECC
Confidence 468999999999999999999999887652 4677777754
No 258
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.74 E-value=4.6e-05 Score=65.77 Aligned_cols=38 Identities=16% Similarity=0.370 Sum_probs=31.7
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCC
Q 010469 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497 (510)
Q Consensus 456 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n 497 (510)
+|+||++||++|++.+|.+.++++.++ +.+.-|+++..
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g----~~Vi~Vs~D~~ 110 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG----FSVFPYTLDGQ 110 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC----CEEEEEEeCCC
Confidence 777999999999999999999999873 56666666544
No 259
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=97.72 E-value=9.6e-05 Score=64.70 Aligned_cols=60 Identities=20% Similarity=0.431 Sum_probs=45.6
Q ss_pred eEEEeCcchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCC
Q 010469 436 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497 (510)
Q Consensus 436 ~~~l~~~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n 497 (510)
+..++++.+.-... .+++++|+||++||++|+...+.+.++++.+.+ .++.++.++++..
T Consensus 46 ~~~~~g~~~~l~~~-~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~-~~~~vi~i~~d~~ 105 (173)
T PRK03147 46 LTDLEGKKIELKDL-KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKE-KGVEIIAVNVDET 105 (173)
T ss_pred eecCCCCEEeHHHc-CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc-CCeEEEEEEcCCC
Confidence 44455555443222 357899999999999999999999999999875 3588888887644
No 260
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.71 E-value=5.7e-05 Score=68.64 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=38.7
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 010469 452 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 495 (510)
Q Consensus 452 ~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~ 495 (510)
++++||.||++||++|...+|.+.++.+.+++ .++.++-|+++
T Consensus 99 GK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~-~Gv~VIgV~~d 141 (236)
T PLN02399 99 GKVLLIVNVASKCGLTSSNYSELSHLYEKYKT-QGFEILAFPCN 141 (236)
T ss_pred CCeEEEEEEcCCCcchHHHHHHHHHHHHHHhc-CCcEEEEEecc
Confidence 68999999999999999999999999999976 46888888874
No 261
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.71 E-value=0.00019 Score=52.40 Aligned_cols=67 Identities=18% Similarity=0.320 Sum_probs=44.6
Q ss_pred EEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHh----CCCCcccEEEEEeCCeeeeecCCCCHH
Q 010469 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHE----YDVQGFPTIYFFVDGQHKAYNGGRTKD 189 (510)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~----~~v~~~P~~~~~~~g~~~~y~g~~~~~ 189 (510)
++.|+++||++|+...+.+.+. ++.+..+|.+.++..... .++.++|++++ +|. ...| .+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~---------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~--~i~g-~~~~ 67 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER---------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE--HLSG-FRPD 67 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC---------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE--EEec-CCHH
Confidence 5789999999999988877652 356666777665544333 36789999865 442 2333 4556
Q ss_pred HHHHH
Q 010469 190 AIVTW 194 (510)
Q Consensus 190 ~l~~~ 194 (510)
.|.++
T Consensus 68 ~l~~~ 72 (73)
T cd02976 68 KLRAL 72 (73)
T ss_pred HHHhh
Confidence 66654
No 262
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.70 E-value=0.00013 Score=66.61 Aligned_cols=83 Identities=19% Similarity=0.342 Sum_probs=60.2
Q ss_pred CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEe----------------Cc------------------
Q 010469 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVD----------------AT------------------ 154 (510)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd----------------~~------------------ 154 (510)
+++.+++.|..+.||+|+++.+.+.++.+. +..+.+..+. |.
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~ 181 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSP 181 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCc
Confidence 357889999999999999999998876431 1122222111 11
Q ss_pred --------ccHHHHHhCCCCcccEEEEEeCCeeeeecCCCCHHHHHHHHHHH
Q 010469 155 --------EENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKKK 198 (510)
Q Consensus 155 --------~~~~~~~~~~v~~~P~~~~~~~g~~~~y~g~~~~~~l~~~i~~~ 198 (510)
++.++++++||+++|+++ +.+|... .|..+.+.|.++|...
T Consensus 182 ~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~--~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 182 ASCDVDIADHYALGVQFGVQGTPAIV-LSNGTLV--PGYQGPKEMKAFLDEH 230 (232)
T ss_pred ccccchHHHhHHHHHHcCCccccEEE-EcCCeEe--eCCCCHHHHHHHHHHc
Confidence 223678899999999998 7788643 7999999999998753
No 263
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=97.68 E-value=0.00019 Score=54.28 Aligned_cols=100 Identities=25% Similarity=0.372 Sum_probs=68.5
Q ss_pred cCCCchhhhccCCccceEEEEEeccc---hhhHHHHHHHHHHhccC----c----eEEEEEEcCCcccccchhhhcCCCC
Q 010469 311 FTRENAPSVFESPIKNQLLLFAVSND---SEKLLPVFEEAAKSFKG----K----LIFVYVQMDNEDVGKPVSEYFGITG 379 (510)
Q Consensus 311 lt~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~A~~~~~----~----~~f~~vd~~~~~~~~~l~~~~gi~~ 379 (510)
+++.+...+.. -+++++|.+.++ .+...+.++.+|.++.. + ...+.+++++ +....+.++.++..
T Consensus 4 Lse~~a~~Ln~---~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ed-e~tdsLRDf~nL~d 79 (116)
T cd03071 4 LSESNAVQLNE---GPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGED-DMTDSLRDYTNLPE 79 (116)
T ss_pred ccHHHHHhhcC---CceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccc-hHHHHHHHhcCCCc
Confidence 44444444422 367788887643 56777788888876431 1 3333444443 33556677888854
Q ss_pred CCCcEEEEeeCCCCCcccCCC-CCCHHHHHHHHHHhh
Q 010469 380 EAPKVLAYTGNDDAKKHILDG-ELTLDKIKTFGEDFL 415 (510)
Q Consensus 380 ~~~P~~~i~~~~~~~~y~~~~-~~t~e~i~~Fi~~~~ 415 (510)
.-|.+++.+-...++|.+.. ++|.+++.+|+.+++
T Consensus 80 -~~P~LviLDip~r~~~v~~~eeIT~e~~~~fv~~yl 115 (116)
T cd03071 80 -AAPLLTILDMSARAKYVMDVEEITPAIVEAFVSDFL 115 (116)
T ss_pred -cCceEEEEeccccceEeCchHhcCHHHHHHHHHHhh
Confidence 47999999998899999874 899999999999986
No 264
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.67 E-value=0.00043 Score=55.20 Aligned_cols=98 Identities=11% Similarity=0.123 Sum_probs=71.3
Q ss_pred EeChhcHHHHHhCCCeEEEEE---ECCCChHHhhhhHHHHHHHHHHh-hcCCCeEEEEEeCcccHHHHHhCCCCc----c
Q 010469 97 VLKERNFSDVIENNKFVMVEF---YAPWCGHCQALAPEYAAAATELK-SANESVVLAKVDATEENELAHEYDVQG----F 168 (510)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~v~f---~a~wC~~C~~~~p~~~~~~~~~~-~~~~~v~~~~vd~~~~~~~~~~~~v~~----~ 168 (510)
+++.++...... .+..++++ |+..-..-....+.+.++|+.++ + ++.|+.+|.++.....+.+|+.. .
T Consensus 3 ~~~~en~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~g---ki~Fv~~D~~~~~~~l~~fgl~~~~~~~ 78 (111)
T cd03073 3 HRTKDNRAQFTK-KPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDR---KLNFAVADKEDFSHELEEFGLDFSGGEK 78 (111)
T ss_pred eeccchHHHhcc-CCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCC---eEEEEEEcHHHHHHHHHHcCCCcccCCC
Confidence 355666666642 33333332 22233445678899999999999 6 69999999998888889999984 9
Q ss_pred cEEEEEe-CCeeeeecCCC-CHHHHHHHHHHH
Q 010469 169 PTIYFFV-DGQHKAYNGGR-TKDAIVTWIKKK 198 (510)
Q Consensus 169 P~~~~~~-~g~~~~y~g~~-~~~~l~~~i~~~ 198 (510)
|.+.++. ++..+...+.. +.+.|.+|++..
T Consensus 79 P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 79 PVVAIRTAKGKKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CEEEEEeCCCCccCCCcccCCHHHHHHHHHHh
Confidence 9999987 44444457778 999999999864
No 265
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.62 E-value=0.0017 Score=53.52 Aligned_cols=108 Identities=14% Similarity=0.248 Sum_probs=79.8
Q ss_pred CcEEeChhcHHH-HHhCCCeEEEEEECC--CChH-H-hhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCC--
Q 010469 94 DVVVLKERNFSD-VIENNKFVMVEFYAP--WCGH-C-QALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQ-- 166 (510)
Q Consensus 94 ~v~~l~~~~~~~-~~~~~~~~~v~f~a~--wC~~-C-~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~-- 166 (510)
.+++|+.++.-. .=.+++.-+|-|.-. .|.+ + ......+.++|+++++ ..+.|+.+|.++...+.+.||+.
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kg--k~i~Fv~vd~~~~~~~~~~fgl~~~ 80 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKK--KPWGWLWTEAGAQLDLEEALNIGGF 80 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcC--CcEEEEEEeCcccHHHHHHcCCCcc
Confidence 577788766543 334455656666432 1332 3 3467899999999988 23999999999999999999985
Q ss_pred cccEEEEEeCC-eeee-ecCCCCHHHHHHHHHHHcCCCc
Q 010469 167 GFPTIYFFVDG-QHKA-YNGGRTKDAIVTWIKKKIGPGI 203 (510)
Q Consensus 167 ~~P~~~~~~~g-~~~~-y~g~~~~~~l~~~i~~~~~~~~ 203 (510)
++|+++++... ..+. +.|..+.+.+.+|+...+....
T Consensus 81 ~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 81 GYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred CCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence 59999999743 2444 7899999999999999986543
No 266
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.60 E-value=0.00038 Score=48.72 Aligned_cols=54 Identities=22% Similarity=0.458 Sum_probs=41.0
Q ss_pred EEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHH----HhCCCCcccEEEEEeCCe
Q 010469 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELA----HEYDVQGFPTIYFFVDGQ 178 (510)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~----~~~~v~~~P~~~~~~~g~ 178 (510)
++.|+.+||++|++....|++ .++.+-.+|.+.+++.. +..+..++|++++ +|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~---------~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~ 58 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE---------KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGK 58 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH---------TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTE
T ss_pred cEEEEcCCCcCHHHHHHHHHH---------cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCE
Confidence 578999999999999888843 14778888887775433 3349999999876 553
No 267
>PLN02412 probable glutathione peroxidase
Probab=97.57 E-value=0.00011 Score=63.80 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=38.7
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 010469 452 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 495 (510)
Q Consensus 452 ~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~ 495 (510)
++.+||+||++||++|+..+|.+.++.+.+++ .++.++-|+++
T Consensus 29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~-~g~~vvgv~~~ 71 (167)
T PLN02412 29 GKVLLIVNVASKCGLTDSNYKELNVLYEKYKE-QGFEILAFPCN 71 (167)
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhh-CCcEEEEeccc
Confidence 68999999999999999999999999999986 46888888864
No 268
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.57 E-value=0.00011 Score=65.17 Aligned_cols=39 Identities=23% Similarity=0.449 Sum_probs=31.3
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEE
Q 010469 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK 491 (510)
Q Consensus 451 ~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~ 491 (510)
.+++++|+||++||++|+++.|.+.++.+... .++.++.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is 111 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMIS 111 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEe
Confidence 46899999999999999999999999876543 2455543
No 269
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=97.53 E-value=0.00037 Score=52.63 Aligned_cols=83 Identities=17% Similarity=0.227 Sum_probs=62.4
Q ss_pred cccccchhHHHHhccCCCeEEEEEecCCCCcchHHHHHhc-cccCceeEEEcCChhHHHhhCCCCCCCCCeEEEeccC-C
Q 010469 203 IYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKE-T 280 (510)
Q Consensus 203 ~~~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~l~~~~~~~~~~~~p~l~~~~~~-~ 280 (510)
+.++.+.+++.. ++..+..+|+||.+.+++.+..|..+| .++.++.|+....+.. ...... .+.+++|++. .
T Consensus 1 Ikef~~~~eL~~-id~~kr~iIgYF~~~~~~eY~~f~kvA~~lr~dC~F~v~~G~~~-~~~~~~----~~~~i~frp~~~ 74 (91)
T cd03070 1 IKEFRNLDELNN-VDRSKRNIIGYFESKDSDEYDNFRKVANILRDDCSFLVGFGDVT-KPERPP----GDNIIYFPPGHN 74 (91)
T ss_pred CceecCHHHHHh-hCcCCceEEEEEcCCCChhHHHHHHHHHHHhhcCeEEEEecccc-ccccCC----CCCeEEECCCCC
Confidence 356777888887 777889999999999999999999877 7899999998776544 222222 2456678886 4
Q ss_pred CceeeccCCCCC
Q 010469 281 EKISYFADGKFD 292 (510)
Q Consensus 281 ~~~~~y~~g~~~ 292 (510)
.....| .|.++
T Consensus 75 ~~~~~y-~G~~t 85 (91)
T cd03070 75 APDMVY-LGSLT 85 (91)
T ss_pred CCceEE-ccCCC
Confidence 555788 88774
No 270
>PTZ00256 glutathione peroxidase; Provisional
Probab=97.52 E-value=0.00016 Score=63.84 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=35.8
Q ss_pred CCcE-EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 010469 452 SKDV-LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 495 (510)
Q Consensus 452 ~~~v-lv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~ 495 (510)
++++ |+.+||+||++|+..+|.++++.+.+++ .++.++.|+++
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~-~gv~vv~vs~~ 83 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKS-QGLEILAFPCN 83 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhh-CCcEEEEEecc
Confidence 5654 5667999999999999999999999975 46888888864
No 271
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.51 E-value=0.00042 Score=62.02 Aligned_cols=78 Identities=24% Similarity=0.375 Sum_probs=55.0
Q ss_pred CCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEe-------------------------------------
Q 010469 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVD------------------------------------- 152 (510)
Q Consensus 110 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd------------------------------------- 152 (510)
++..++.|..+.|++|+++.+.+.+. .+ +..+.+..+.
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~----~~-~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~ 151 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPN----AD-GVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPA 151 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhc----cC-ceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCc
Confidence 57899999999999999999988761 11 1122222221
Q ss_pred ------CcccHHHHHhCCCCcccEEEEEeCCeeeeecCCCCHHHHHHHH
Q 010469 153 ------ATEENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWI 195 (510)
Q Consensus 153 ------~~~~~~~~~~~~v~~~P~~~~~~~g~~~~y~g~~~~~~l~~~i 195 (510)
..++..+++++||+++|+++ +.+|.. ..|..+.+.|.+||
T Consensus 152 ~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~--~~G~~~~~~l~~~L 197 (197)
T cd03020 152 ASCDNPVAANLALGRQLGVNGTPTIV-LADGRV--VPGAPPAAQLEALL 197 (197)
T ss_pred cccCchHHHHHHHHHHcCCCcccEEE-ECCCeE--ecCCCCHHHHHhhC
Confidence 11223678889999999997 778864 56888888887764
No 272
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.49 E-value=9.2e-05 Score=59.56 Aligned_cols=47 Identities=15% Similarity=0.364 Sum_probs=34.4
Q ss_pred ccCCcEEEEEeCCCChhhhhhhHHHHHHHH---HhcCCCcEEEEEEeCCCCc
Q 010469 450 DESKDVLLEIYAPWCGHCQAFEPTYNKLAK---HLRGVDSIVIAKMDGTTNE 498 (510)
Q Consensus 450 ~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~---~~~~~~~~~~~~id~~~n~ 498 (510)
..+++++|+||++||++|+.+.+.+....+ .++. ++.++.++++...
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 52 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD--DFQVIFVNIDDSR 52 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC--ECEEEECESHSHH
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc--CeEEEEEecCCcc
Confidence 357899999999999999999999986544 3443 6778888876443
No 273
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.49 E-value=0.00054 Score=71.66 Aligned_cols=91 Identities=22% Similarity=0.290 Sum_probs=70.2
Q ss_pred eChhcHHHHHhCCCeE-EEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeC
Q 010469 98 LKERNFSDVIENNKFV-MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVD 176 (510)
Q Consensus 98 l~~~~~~~~~~~~~~~-~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~ 176 (510)
|+.+..+.+-.=++++ +-.|.++||++|......+.+++.... +|..-.+|..+.++++++|+|.++|++++ |
T Consensus 463 l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~----~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~ 536 (555)
T TIGR03143 463 LGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP----NVEAEMIDVSHFPDLKDEYGIMSVPAIVV--D 536 (555)
T ss_pred CCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC----CceEEEEECcccHHHHHhCCceecCEEEE--C
Confidence 4444444443334555 445689999999999888888887643 58899999999999999999999999876 5
Q ss_pred CeeeeecCCCCHHHHHHHH
Q 010469 177 GQHKAYNGGRTKDAIVTWI 195 (510)
Q Consensus 177 g~~~~y~g~~~~~~l~~~i 195 (510)
|. ..+.|..+.+++..||
T Consensus 537 ~~-~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 537 DQ-QVYFGKKTIEEMLELI 554 (555)
T ss_pred CE-EEEeeCCCHHHHHHhh
Confidence 54 3466988999998886
No 274
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.48 E-value=0.0012 Score=51.75 Aligned_cols=77 Identities=21% Similarity=0.436 Sum_probs=66.0
Q ss_pred hhcHHHHHh--CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCC
Q 010469 100 ERNFSDVIE--NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG 177 (510)
Q Consensus 100 ~~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g 177 (510)
+...++++. ..++++|-|-..|-|.|.++...|.++++.+.+ =..++.||.++-+++.+-|++...|++.+|-++
T Consensus 11 ~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn---fa~IylvdideV~~~~~~~~l~~p~tvmfFfn~ 87 (142)
T KOG3414|consen 11 GWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN---FAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNN 87 (142)
T ss_pred HHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhh---ceEEEEEecchhhhhhhhhcccCCceEEEEEcC
Confidence 455666653 458999999999999999999999999999977 578888999999999999999999999998776
Q ss_pred ee
Q 010469 178 QH 179 (510)
Q Consensus 178 ~~ 179 (510)
+.
T Consensus 88 kH 89 (142)
T KOG3414|consen 88 KH 89 (142)
T ss_pred ce
Confidence 33
No 275
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.46 E-value=0.00094 Score=57.00 Aligned_cols=31 Identities=39% Similarity=0.671 Sum_probs=27.4
Q ss_pred CCCeEEEEEECCCChHHhhhhHHHHHHHHHH
Q 010469 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATEL 139 (510)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~ 139 (510)
+.+++++.|+.++||+|+.+.|.+.++...+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~ 34 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKED 34 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence 4578999999999999999999999987665
No 276
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.42 E-value=0.0011 Score=49.77 Aligned_cols=93 Identities=19% Similarity=0.347 Sum_probs=73.1
Q ss_pred hhcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcc--cHHHHHhCCCC----ccc-EEE
Q 010469 100 ERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE--ENELAHEYDVQ----GFP-TIY 172 (510)
Q Consensus 100 ~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~----~~P-~~~ 172 (510)
.++|..++.....++|.|..+-- .-......|.++|+..++ .-.++-|||.+ .+.||+++.|. --| ++.
T Consensus 9 ~KdfKKLLRTr~NVLvLy~ks~k-~a~~~Lk~~~~~A~~vkG---~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~Lk 84 (112)
T cd03067 9 HKDFKKLLRTRNNVLVLYSKSAK-SAEALLKLLSDVAQAVKG---QGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELK 84 (112)
T ss_pred hHHHHHHHhhcCcEEEEEecchh-hHHHHHHHHHHHHHHhcC---ceeEEEEecCChHHHHHHHHHccCCCCCCCcchhh
Confidence 47788888877888888876543 334455689999999988 56888999987 67899999987 444 355
Q ss_pred EEeCCee-eeecCCCCHHHHHHHHH
Q 010469 173 FFVDGQH-KAYNGGRTKDAIVTWIK 196 (510)
Q Consensus 173 ~~~~g~~-~~y~g~~~~~~l~~~i~ 196 (510)
-|++|.. ..|....+...+..|++
T Consensus 85 HYKdG~fHkdYdR~~t~kSmv~Flr 109 (112)
T cd03067 85 HYKDGDFHTEYNRQLTFKSMVAFLR 109 (112)
T ss_pred cccCCCccccccchhhHHHHHHHhh
Confidence 6689944 58999999999999986
No 277
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.42 E-value=0.0024 Score=49.49 Aligned_cols=90 Identities=18% Similarity=0.265 Sum_probs=63.4
Q ss_pred ChhcHHHHHhC--CCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHH----HHHhCCCC-cccEE
Q 010469 99 KERNFSDVIEN--NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENE----LAHEYDVQ-GFPTI 171 (510)
Q Consensus 99 ~~~~~~~~~~~--~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~----~~~~~~v~-~~P~~ 171 (510)
+.+.+++++.. .++++|+=.++.|+-+......|++.+....+ .+.++.+|.-+++. +++++||. .-|.+
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~---~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ 82 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD---EIPVYYLDVIEYRPVSNAIAEDFGVKHESPQV 82 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGGGGHHHHHHHHHHHT----SSEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc---cceEEEEEEEeCchhHHHHHHHhCCCcCCCcE
Confidence 45678888865 78988888999999999999999999887765 48999999988774 67789987 57999
Q ss_pred EEEeCCeee--eecCCCCHHHH
Q 010469 172 YFFVDGQHK--AYNGGRTKDAI 191 (510)
Q Consensus 172 ~~~~~g~~~--~y~g~~~~~~l 191 (510)
+++++|+.+ .-.+..+.+.|
T Consensus 83 ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 83 ILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEEETTEEEEEEEGGG-SHHHH
T ss_pred EEEECCEEEEECccccCCHHhc
Confidence 999999553 33455665554
No 278
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.40 E-value=0.00019 Score=57.91 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=42.9
Q ss_pred cchhhHhh---ccCCcEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCCcEEEEEEeCCCCcC
Q 010469 442 NNFDEIVL---DESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH 499 (510)
Q Consensus 442 ~~f~~~v~---~~~~~vlv~f~~~~c~~C~~~~~~~---~~~a~~~~~~~~~~~~~id~~~n~~ 499 (510)
.+|++.+. ..+++++|+|+++||++|+.|...+ .++.+.++. ++++..+|++..+.
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~--~~v~~~~d~~~~e~ 65 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE--NFIFWQCDIDSSEG 65 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh--CEEEEEecCCCccH
Confidence 45666553 3468999999999999999998754 666677765 78999999876443
No 279
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.39 E-value=0.0026 Score=54.84 Aligned_cols=84 Identities=20% Similarity=0.372 Sum_probs=63.1
Q ss_pred CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccH-------------------------------
Q 010469 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN------------------------------- 157 (510)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~------------------------------- 157 (510)
+.+++|+.|+..-||+|..+.+.+.++.+++-+. .++.+.-++.....
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~-~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDP-GKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQ 89 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT-TTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCC-CceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 4578999999999999999999999999988221 16777777652110
Q ss_pred -------------------------------------HHHHhCCCCcccEEEEEeCCeeeeecCCCCHHHHHHHHHH
Q 010469 158 -------------------------------------ELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKK 197 (510)
Q Consensus 158 -------------------------------------~~~~~~~v~~~P~~~~~~~g~~~~y~g~~~~~~l~~~i~~ 197 (510)
..+++.+|.++|++++ ||+. +.|..+.+.|.++|.+
T Consensus 90 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~--~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 90 ENFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKY--VVGPYTIEELKELIDK 162 (162)
T ss_dssp HSTSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCE--EETTTSHHHHHHHHHH
T ss_pred hccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEE--eCCCCCHHHHHHHHcC
Confidence 3345689999999988 7765 4788999999988864
No 280
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=97.38 E-value=0.00031 Score=61.35 Aligned_cols=45 Identities=18% Similarity=0.389 Sum_probs=39.3
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 010469 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 496 (510)
Q Consensus 451 ~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~ 496 (510)
.++++||+||++||+.|....+.+.++.+.+.. .++.|+.|..+.
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~-~~v~~v~is~d~ 68 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA-KGVAVVAINSND 68 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh-CCeEEEEEecCc
Confidence 467899999999999999999999999999874 468888888764
No 281
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=97.38 E-value=0.00018 Score=58.97 Aligned_cols=42 Identities=38% Similarity=0.675 Sum_probs=32.6
Q ss_pred EeCcchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHh
Q 010469 439 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHL 481 (510)
Q Consensus 439 l~~~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~ 481 (510)
+.++.+..... .+++++|+||++||++|+.+.|.+..+++.+
T Consensus 8 ~~g~~~~~~~~-~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~ 49 (123)
T cd03011 8 LDGEQFDLESL-SGKPVLVYFWATWCPVCRFTSPTVNQLAADY 49 (123)
T ss_pred CCCCEeeHHHh-CCCEEEEEEECCcChhhhhhChHHHHHHhhC
Confidence 44444444333 3589999999999999999999999988763
No 282
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.37 E-value=0.00034 Score=56.40 Aligned_cols=42 Identities=31% Similarity=0.725 Sum_probs=38.1
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 010469 452 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 495 (510)
Q Consensus 452 ~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~ 495 (510)
++++++.||++||++|+.+.|.+.++++.+.. .+.+..+|+.
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~~ 73 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG--DVEVVAVNVD 73 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC--CcEEEEEECC
Confidence 67899999999999999999999999999976 6888888886
No 283
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.34 E-value=0.00016 Score=55.18 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=36.0
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcC
Q 010469 455 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 499 (510)
Q Consensus 455 vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~ 499 (510)
-+..|+++||++|..+.+.+.+++.... ++.+..+|++....
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~---~i~~~~vd~~~~~e 56 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNP---NIEHEMIDGALFQD 56 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCC---CceEEEEEhHhCHH
Confidence 5778999999999999999999998764 59999999886643
No 284
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.33 E-value=0.00028 Score=78.83 Aligned_cols=42 Identities=19% Similarity=0.428 Sum_probs=37.1
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEe
Q 010469 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 493 (510)
Q Consensus 451 ~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id 493 (510)
.+++|||+|||+||++|+.+.|.++++++++++ .++.++.|.
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~-~~~~vvgV~ 460 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKD-QPFTVVGVH 460 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCC-CCeEEEEEe
Confidence 478999999999999999999999999999976 457777774
No 285
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.26 E-value=0.0014 Score=68.10 Aligned_cols=97 Identities=12% Similarity=0.254 Sum_probs=75.2
Q ss_pred EeChhcHHHHHhCC-CeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEe
Q 010469 97 VLKERNFSDVIENN-KFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFV 175 (510)
Q Consensus 97 ~l~~~~~~~~~~~~-~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~ 175 (510)
.|+++..+.+-.-. +.-+-.|.+++||+|......+.+++... .+|..-.+|..+.++++.+|+|.++|++++
T Consensus 102 ~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~----~~i~~~~id~~~~~~~~~~~~v~~VP~~~i-- 175 (517)
T PRK15317 102 KLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLN----PNITHTMIDGALFQDEVEARNIMAVPTVFL-- 175 (517)
T ss_pred CCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC----CCceEEEEEchhCHhHHHhcCCcccCEEEE--
Confidence 34455555444333 44588899999999999999998888743 369999999999999999999999999965
Q ss_pred CCeeeeecCCCCHHHHHHHHHHHcC
Q 010469 176 DGQHKAYNGGRTKDAIVTWIKKKIG 200 (510)
Q Consensus 176 ~g~~~~y~g~~~~~~l~~~i~~~~~ 200 (510)
+|. ..+.|..+.+.+...+.+..+
T Consensus 176 ~~~-~~~~g~~~~~~~~~~~~~~~~ 199 (517)
T PRK15317 176 NGE-EFGQGRMTLEEILAKLDTGAA 199 (517)
T ss_pred CCc-EEEecCCCHHHHHHHHhcccc
Confidence 554 457799998888888776544
No 286
>smart00594 UAS UAS domain.
Probab=97.26 E-value=0.00045 Score=56.39 Aligned_cols=68 Identities=12% Similarity=0.191 Sum_probs=50.8
Q ss_pred EeCcchhhHhh---ccCCcEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCCcEEEEEEeCCCCcCccceeEeee
Q 010469 439 VVGNNFDEIVL---DESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEHHRAKVIFDV 508 (510)
Q Consensus 439 l~~~~f~~~v~---~~~~~vlv~f~~~~c~~C~~~~~~~---~~~a~~~~~~~~~~~~~id~~~n~~~~~~~~~~v 508 (510)
....+|++.+. ..+|.++|+|+++||++|..+...+ .++.+.++. ++++..+|++..+.......|++
T Consensus 11 f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~--~fv~~~~dv~~~eg~~l~~~~~~ 84 (122)
T smart00594 11 FYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE--NFIFWQVDVDTSEGQRVSQFYKL 84 (122)
T ss_pred eeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc--CEEEEEecCCChhHHHHHHhcCc
Confidence 45567887764 3457999999999999999998876 566667765 79999999987776544434443
No 287
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.22 E-value=0.00016 Score=72.58 Aligned_cols=67 Identities=21% Similarity=0.398 Sum_probs=48.3
Q ss_pred EEEeCc-chhhHhhc-cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccce
Q 010469 437 KIVVGN-NFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 503 (510)
Q Consensus 437 ~~l~~~-~f~~~v~~-~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~ 503 (510)
+.++.. ..++.+.+ .+++|+|+|||.||-.||.+++....-.+......+++..+.|.++|+....+
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~ 525 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITA 525 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHH
Confidence 444444 56665543 34699999999999999999998864333333335799999999999875554
No 288
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.20 E-value=0.00072 Score=51.27 Aligned_cols=75 Identities=24% Similarity=0.349 Sum_probs=51.1
Q ss_pred EEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccH----HHHHhCC--CCcccEEEEEeCCeeeeecCCCC
Q 010469 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN----ELAHEYD--VQGFPTIYFFVDGQHKAYNGGRT 187 (510)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~----~~~~~~~--v~~~P~~~~~~~g~~~~y~g~~~ 187 (510)
++.|..+|||+|.+....|.++..+.. ++.+..+|...+. ++.+..+ +.++|+++ .+|+. .| .
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~----~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~---ig--G 70 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA----DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKH---VG--G 70 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC----CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEE---ec--C
Confidence 678999999999999999988764432 3667777776433 4555555 37899984 35543 23 3
Q ss_pred HHHHHHHHHHHc
Q 010469 188 KDAIVTWIKKKI 199 (510)
Q Consensus 188 ~~~l~~~i~~~~ 199 (510)
.+.|.+++.+..
T Consensus 71 ~~dl~~~~~~~~ 82 (86)
T TIGR02183 71 CTDFEQLVKENF 82 (86)
T ss_pred HHHHHHHHHhcc
Confidence 467777777644
No 289
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.19 E-value=0.00073 Score=56.89 Aligned_cols=47 Identities=17% Similarity=0.242 Sum_probs=39.0
Q ss_pred cCCcEEEEEeCCCChh-hhhhhHHHHHHHHHhcCC--CcEEEEEEeCCCC
Q 010469 451 ESKDVLLEIYAPWCGH-CQAFEPTYNKLAKHLRGV--DSIVIAKMDGTTN 497 (510)
Q Consensus 451 ~~~~vlv~f~~~~c~~-C~~~~~~~~~~a~~~~~~--~~~~~~~id~~~n 497 (510)
.+++++|.||++||++ |....+.+.++.+.++.. .++.++.|..+..
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~ 70 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPE 70 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCC
Confidence 4689999999999998 999999999999988753 2588887876543
No 290
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.19 E-value=0.00092 Score=50.19 Aligned_cols=56 Identities=18% Similarity=0.399 Sum_probs=41.0
Q ss_pred EEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccH-----HHHHhCCCCcccEEEEEeCCe
Q 010469 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN-----ELAHEYDVQGFPTIYFFVDGQ 178 (510)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-----~~~~~~~v~~~P~~~~~~~g~ 178 (510)
++.|+++|||+|+...+.|.++.. .+.+..++..++. .+.+..+..++|++ |.+|.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~ 62 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGK 62 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCE
Confidence 578999999999999999988643 3566677765542 34455688899996 44564
No 291
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=97.18 E-value=0.001 Score=54.40 Aligned_cols=47 Identities=28% Similarity=0.554 Sum_probs=40.0
Q ss_pred cCCcEEEEEeCC-CChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCc
Q 010469 451 ESKDVLLEIYAP-WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 498 (510)
Q Consensus 451 ~~~~vlv~f~~~-~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~ 498 (510)
.++++||.||+. ||+.|+...+.+.++.+.++. .++.++-|..+..+
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~-~~~~vi~is~d~~~ 71 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKD-KGVQVIGISTDDPE 71 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT-TTEEEEEEESSSHH
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhcc-ceEEeeeccccccc
Confidence 468999999999 999999999999999998875 47888888875443
No 292
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.17 E-value=0.0026 Score=49.59 Aligned_cols=92 Identities=20% Similarity=0.203 Sum_probs=65.1
Q ss_pred CCcEEeChhcHHHHHhCCCeEEEEEECCCChHHhhhhH---HHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCccc
Q 010469 93 KDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAP---EYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFP 169 (510)
Q Consensus 93 ~~v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p---~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P 169 (510)
.....++..+++..+..+... |.|++..|..|.+... .+-++.+.+.+ .+..+.+.-..+..+..+|++..+|
T Consensus 9 ~g~~~vd~~~ld~~l~~~~~~-vlf~~gDp~r~~E~~DvaVILPEL~~af~~---~~~~avv~~~~e~~L~~r~gv~~~P 84 (107)
T PF07449_consen 9 HGWPRVDADTLDAFLAAPGDA-VLFFAGDPARFPETADVAVILPELVKAFPG---RFRGAVVARAAERALAARFGVRRWP 84 (107)
T ss_dssp -TEEEE-CCCHHHHHHCCSCE-EEEESS-TTTSTTCCHHHHHHHHHHCTSTT---SEEEEEEEHHHHHHHHHHHT-TSSS
T ss_pred cCCeeechhhHHHHHhCCCcE-EEEECCCCCcCcccccceeEcHHHHHhhhC---ccceEEECchhHHHHHHHhCCccCC
Confidence 356778899999999877664 4566666665555444 55555555555 6778888877888999999999999
Q ss_pred EEEEEeCCeee-eecCCCCH
Q 010469 170 TIYFFVDGQHK-AYNGGRTK 188 (510)
Q Consensus 170 ~~~~~~~g~~~-~y~g~~~~ 188 (510)
+++++++|... ...|.++.
T Consensus 85 aLvf~R~g~~lG~i~gi~dW 104 (107)
T PF07449_consen 85 ALVFFRDGRYLGAIEGIRDW 104 (107)
T ss_dssp EEEEEETTEEEEEEESSSTH
T ss_pred eEEEEECCEEEEEecCeecc
Confidence 99999999654 55666654
No 293
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=97.12 E-value=0.0062 Score=54.88 Aligned_cols=39 Identities=21% Similarity=0.496 Sum_probs=29.3
Q ss_pred CCeEEEEEECCCChHHhhhhHHH---HHHHHHHhhcCCCeEEEEE
Q 010469 110 NKFVMVEFYAPWCGHCQALAPEY---AAAATELKSANESVVLAKV 151 (510)
Q Consensus 110 ~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~v~~~~v 151 (510)
+++.+|.|+.-.||||..+.|.+ ..+.+.+.+ ++.+..+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~---~v~~~~~ 78 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE---GTKMTKY 78 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC---CCeEEEe
Confidence 45679999999999999999876 677777654 4444443
No 294
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=97.12 E-value=0.00054 Score=56.89 Aligned_cols=47 Identities=21% Similarity=0.452 Sum_probs=36.2
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-CcEEEEEEeCCCC
Q 010469 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTN 497 (510)
Q Consensus 451 ~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~-~~~~~~~id~~~n 497 (510)
.++.|.++|.|.||++|+.+-|.+.++.+.++.. ..+.++-++.+.+
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~ 79 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRD 79 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCC
Confidence 3689999999999999999999999999888652 2355555554443
No 295
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.10 E-value=0.0048 Score=57.17 Aligned_cols=82 Identities=17% Similarity=0.297 Sum_probs=58.7
Q ss_pred CCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEe----------------Ccc------------------
Q 010469 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVD----------------ATE------------------ 155 (510)
Q Consensus 110 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd----------------~~~------------------ 155 (510)
.+.+++.|.-+.||+|+++.+.+..+.+. + +|.+..+- |.+
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g---~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~ 191 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDS--G---KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGL 191 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhc--C---ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCC
Confidence 46789999999999999999988776542 1 23322221 111
Q ss_pred ----------------cHHHHHhCCCCcccEEEEEe-CCeeeeecCCCCHHHHHHHHH
Q 010469 156 ----------------ENELAHEYDVQGFPTIYFFV-DGQHKAYNGGRTKDAIVTWIK 196 (510)
Q Consensus 156 ----------------~~~~~~~~~v~~~P~~~~~~-~g~~~~y~g~~~~~~l~~~i~ 196 (510)
+..+.+++||+++|++++-+ +|......|..+.+.|.+++.
T Consensus 192 ~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 192 KPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred CccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence 11466679999999998886 566667889999999888764
No 296
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=97.10 E-value=0.0053 Score=49.10 Aligned_cols=76 Identities=21% Similarity=0.378 Sum_probs=61.6
Q ss_pred hhcHHHHH--hCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEE-eC
Q 010469 100 ERNFSDVI--ENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFF-VD 176 (510)
Q Consensus 100 ~~~~~~~~--~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~-~~ 176 (510)
+-..++++ ...+.++|-|-..|-+.|.++...|.+++++.+. -..++.||.++-+++.+.|.+. -|.+++| -+
T Consensus 8 ~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~---~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~r 83 (133)
T PF02966_consen 8 GWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN---FAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFR 83 (133)
T ss_dssp HHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT---TEEEEEEETTTTHCCHHHTTS--SSEEEEEEET
T ss_pred cchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc---ceEEEEEEcccchhhhcccccC-CCeEEEEEec
Confidence 45566765 4568999999999999999999999999999987 5889999999999999999998 7876655 36
Q ss_pred Cee
Q 010469 177 GQH 179 (510)
Q Consensus 177 g~~ 179 (510)
++.
T Consensus 84 nkh 86 (133)
T PF02966_consen 84 NKH 86 (133)
T ss_dssp TEE
T ss_pred CeE
Confidence 643
No 297
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.07 E-value=0.0011 Score=56.32 Aligned_cols=43 Identities=14% Similarity=0.209 Sum_probs=34.6
Q ss_pred cEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCC
Q 010469 454 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497 (510)
Q Consensus 454 ~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n 497 (510)
.+|++|+++||+.|+..+|.+.++.+.+.. .++.++.|..+..
T Consensus 26 ~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~-~~v~vv~V~~~~~ 68 (149)
T cd02970 26 VVVVFYRGFGCPFCREYLRALSKLLPELDA-LGVELVAVGPESP 68 (149)
T ss_pred EEEEEECCCCChhHHHHHHHHHHHHHHHHh-cCeEEEEEeCCCH
Confidence 455555799999999999999999999864 4688888887654
No 298
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.0018 Score=50.44 Aligned_cols=55 Identities=22% Similarity=0.479 Sum_probs=42.1
Q ss_pred cchhhHhhc--cCCcEEEEEeCC--------CChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCc
Q 010469 442 NNFDEIVLD--ESKDVLLEIYAP--------WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 498 (510)
Q Consensus 442 ~~f~~~v~~--~~~~vlv~f~~~--------~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~ 498 (510)
+.|++.+.+ +++.++|+|+++ ||+.|.+..|.+.++-++... ++.|+.+++..-+
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~--~~~~v~v~VG~rp 77 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE--DVHFVHVYVGNRP 77 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC--ceEEEEEEecCCC
Confidence 356666543 344588889875 999999999999998886655 8999999986543
No 299
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.02 E-value=0.002 Score=47.94 Aligned_cols=56 Identities=14% Similarity=0.310 Sum_probs=40.7
Q ss_pred eEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCccc---HHHHHhCCCCcccEEEEEeCCe
Q 010469 112 FVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE---NELAHEYDVQGFPTIYFFVDGQ 178 (510)
Q Consensus 112 ~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~---~~~~~~~~v~~~P~~~~~~~g~ 178 (510)
.-++.|+.+||++|++....|.+. ++.+-.+|++++ ..+.+..+...+|.+++ +|.
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~---------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~ 66 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEK---------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGK 66 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHc---------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCE
Confidence 447889999999999999888642 366666777655 34445568889999953 564
No 300
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=96.99 E-value=0.0012 Score=57.83 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=36.6
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 010469 452 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 495 (510)
Q Consensus 452 ~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~ 495 (510)
++++||.|||+||+.|. ..|.++++.+.+++ .++.++.+.|.
T Consensus 25 GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~-~gl~Vlg~p~n 66 (183)
T PRK10606 25 GNVLLIVNVASKCGLTP-QYEQLENIQKAWAD-QGFVVLGFPCN 66 (183)
T ss_pred CCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhh-CCeEEEEeecc
Confidence 68999999999999997 48899999999975 56888888874
No 301
>PHA03050 glutaredoxin; Provisional
Probab=96.97 E-value=0.0032 Score=49.84 Aligned_cols=63 Identities=16% Similarity=0.223 Sum_probs=38.8
Q ss_pred HHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcc-cH----HHHHhCCCCcccEEE
Q 010469 104 SDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-EN----ELAHEYDVQGFPTIY 172 (510)
Q Consensus 104 ~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-~~----~~~~~~~v~~~P~~~ 172 (510)
++.+.+++ ++.|..+|||+|++....|.+..-.. ..+....++-.. .. .+.+..|.+.+|+++
T Consensus 7 ~~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~----~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~If 74 (108)
T PHA03050 7 QQRLANNK--VTIFVKFTCPFCRNALDILNKFSFKR----GAYEIVDIKEFKPENELRDYFEQITGGRTVPRIF 74 (108)
T ss_pred HHHhccCC--EEEEECCCChHHHHHHHHHHHcCCCc----CCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEE
Confidence 34555544 77899999999999988887653211 123344444211 22 344555788999983
No 302
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=96.95 E-value=0.0054 Score=49.97 Aligned_cols=106 Identities=8% Similarity=0.159 Sum_probs=75.6
Q ss_pred cCCCceeecCCCchhhhccCCccceEEEEEec----cchhhHHHHHHHHHHhccC-ceEEEEEEcCCcccccchhhhcCC
Q 010469 303 NKLPLVTIFTRENAPSVFESPIKNQLLLFAVS----NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGI 377 (510)
Q Consensus 303 ~~~p~~~~lt~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~~~~~~A~~~~~-~~~f~~vd~~~~~~~~~l~~~~gi 377 (510)
+.+|.+ +..++..+..... .+++++..+ .+..+.--.+.++|++|.+ ++.|+.+|.+. ...+...||+
T Consensus 17 ~g~~~~---~~~~~~~~~~~~~-~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~---~~~LA~~fgV 89 (132)
T PRK11509 17 RGWTPV---SESRLDDWLTQAP-DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ---SEAIGDRFGV 89 (132)
T ss_pred cCCCcc---ccccHHHHHhCCC-cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCC---CHHHHHHcCC
Confidence 455544 4466666665543 344444443 3345566688999999984 59999999887 5589999999
Q ss_pred CCCCCcEEEEeeCCCCCcccCCCCCCHHHHHHHHHHhhcCc
Q 010469 378 TGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGK 418 (510)
Q Consensus 378 ~~~~~P~~~i~~~~~~~~y~~~~~~t~e~i~~Fi~~~~~Gk 418 (510)
.. .|+++++.+++ ..-...|..+.+.+.++|+.++...
T Consensus 90 ~s--iPTLl~FkdGk-~v~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 90 FR--FPATLVFTGGN-YRGVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred cc--CCEEEEEECCE-EEEEEeCcCCHHHHHHHHHHHhcCc
Confidence 75 49999996653 3334567889999999999988753
No 303
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=96.91 E-value=0.0017 Score=54.80 Aligned_cols=42 Identities=17% Similarity=0.309 Sum_probs=36.2
Q ss_pred CCcEEEEEeCCC-ChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 010469 452 SKDVLLEIYAPW-CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 496 (510)
Q Consensus 452 ~~~vlv~f~~~~-c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~ 496 (510)
+++++|+||+.| |++|+..+|.+.++.+.+. ++.++.|+++.
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~---~~~vi~Is~d~ 68 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLD---NTVVLTISADL 68 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC---CCEEEEEECCC
Confidence 678999999998 6999999999999998874 57888888753
No 304
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.90 E-value=0.0018 Score=45.46 Aligned_cols=42 Identities=31% Similarity=0.668 Sum_probs=34.6
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCc
Q 010469 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH 500 (510)
Q Consensus 456 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~ 500 (510)
++.||++||++|..+.+.+.++ .... .++.++.+|++.....
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~ 42 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLN--KGVKFEAVDVDEDPAL 42 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhC--CCcEEEEEEcCCChHH
Confidence 5789999999999999999998 3333 3799999999877654
No 305
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.90 E-value=0.0034 Score=45.42 Aligned_cols=54 Identities=20% Similarity=0.409 Sum_probs=38.8
Q ss_pred EEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHH----HHhCCCCcccEEEEEeCCe
Q 010469 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENEL----AHEYDVQGFPTIYFFVDGQ 178 (510)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~----~~~~~v~~~P~~~~~~~g~ 178 (510)
++.|+++||++|+...+.|.+. ++.+..+|...++.. .+..+...+|+++ .+|.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~---------~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~ 59 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL---------GIEFEEIDILEDGELREELKELSGWPTVPQIF--INGE 59 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc---------CCcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCE
Confidence 5788999999999999988764 256667777766543 3345677888774 4553
No 306
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.89 E-value=0.0025 Score=46.42 Aligned_cols=67 Identities=15% Similarity=0.275 Sum_probs=46.7
Q ss_pred EEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhC---CCCcccEEEEEeCCeeeeecCCCCHHH
Q 010469 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEY---DVQGFPTIYFFVDGQHKAYNGGRTKDA 190 (510)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~---~v~~~P~~~~~~~g~~~~y~g~~~~~~ 190 (510)
+..|..++|++|++....|.+. ++.+-.+|.++++.....+ |..++|++++ +|. .+.|..+.+.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~---------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~--~~~~G~~~~~ 67 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH---------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD--LSWSGFRPDK 67 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC---------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC--cEEeccCHHH
Confidence 3568889999999999888641 4777778888777555444 7788999744 342 2445566666
Q ss_pred HHH
Q 010469 191 IVT 193 (510)
Q Consensus 191 l~~ 193 (510)
|.+
T Consensus 68 ~~~ 70 (72)
T TIGR02194 68 LKA 70 (72)
T ss_pred HHh
Confidence 654
No 307
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.89 E-value=0.0091 Score=44.56 Aligned_cols=71 Identities=13% Similarity=0.152 Sum_probs=50.4
Q ss_pred EEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHH---HhCCCCcccEEEEEeCCeeeeecCCCCHHH
Q 010469 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELA---HEYDVQGFPTIYFFVDGQHKAYNGGRTKDA 190 (510)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~---~~~~v~~~P~~~~~~~g~~~~y~g~~~~~~ 190 (510)
+..|..+||++|++....|.+ .+|.|-.+|.+++++.. +..+...+|++++ ++. ..+....+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~---------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~~~Gf~~~~ 68 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES---------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---SWSGFRPDM 68 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH---------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---EEecCCHHH
Confidence 678899999999999888854 14788888888776543 3347788999954 332 233567788
Q ss_pred HHHHHHHH
Q 010469 191 IVTWIKKK 198 (510)
Q Consensus 191 l~~~i~~~ 198 (510)
|.+++...
T Consensus 69 l~~~~~~~ 76 (81)
T PRK10329 69 INRLHPAP 76 (81)
T ss_pred HHHHHHhh
Confidence 88776543
No 308
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=96.87 E-value=0.0018 Score=54.94 Aligned_cols=42 Identities=10% Similarity=0.113 Sum_probs=35.3
Q ss_pred CcEEEEEe-CCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 010469 453 KDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 495 (510)
Q Consensus 453 ~~vlv~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~ 495 (510)
++++|.|| ++||+.|....|.+.++.+.++. .++.++.|..+
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~-~~v~vi~vs~d 71 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEA-AGAEVLGISVD 71 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh-CCCEEEEecCC
Confidence 67777777 99999999999999999999864 46778877754
No 309
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=96.86 E-value=0.0019 Score=55.94 Aligned_cols=42 Identities=21% Similarity=0.362 Sum_probs=36.0
Q ss_pred CCcEEEEEeCCC-ChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 010469 452 SKDVLLEIYAPW-CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 496 (510)
Q Consensus 452 ~~~vlv~f~~~~-c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~ 496 (510)
+++++|+||+.| |++|...+|.+.++++.+. ++.++.|.++.
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~---~~~vv~vs~D~ 86 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD---NTVVLCISADL 86 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC---CcEEEEEeCCC
Confidence 678999999999 9999999999999998884 57777777653
No 310
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=96.85 E-value=0.0016 Score=57.59 Aligned_cols=44 Identities=14% Similarity=0.093 Sum_probs=36.7
Q ss_pred CCcEEEEEe-CCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 010469 452 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 496 (510)
Q Consensus 452 ~~~vlv~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~ 496 (510)
++++||+|| +.||+.|...++.+.++.+.+.+ .++.++-|.++.
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~-~gv~vi~VS~D~ 75 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKK-LGVEVYSVSTDT 75 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHh-cCCcEEEEeCCC
Confidence 678999999 99999999999999999998864 356666666554
No 311
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.84 E-value=0.0047 Score=46.54 Aligned_cols=88 Identities=18% Similarity=0.320 Sum_probs=63.2
Q ss_pred cceEEEEEec-cchhhHHHHHHHHHHhccCceEEEEEEcCCcccccchhhhcCCCCCC--CcEEEEeeCCCCCcccCCCC
Q 010469 325 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA--PKVLAYTGNDDAKKHILDGE 401 (510)
Q Consensus 325 ~~~~v~~~~~-~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~~~~~~l~~~~gi~~~~--~P~~~i~~~~~~~~y~~~~~ 401 (510)
..++++|+.. .+-...+..+.++|...+|.=..+|+||.+.+ .+.+|+.+.+++.. .|..+-...++...=.|+-.
T Consensus 20 ~NVLvLy~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e-~kKLCKKlKv~~~~kp~~~~LkHYKdG~fHkdYdR~ 98 (112)
T cd03067 20 NNVLVLYSKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSE-SRKLCKKLKVDPSSKPKPVELKHYKDGDFHTEYNRQ 98 (112)
T ss_pred CcEEEEEecchhhHHHHHHHHHHHHHHhcCceeEEEEecCChH-HHHHHHHHccCCCCCCCcchhhcccCCCccccccch
Confidence 3556666665 56677888999999999999899999999866 77899999998432 23333232222223335567
Q ss_pred CCHHHHHHHHHH
Q 010469 402 LTLDKIKTFGED 413 (510)
Q Consensus 402 ~t~e~i~~Fi~~ 413 (510)
.+..++..|+.|
T Consensus 99 ~t~kSmv~FlrD 110 (112)
T cd03067 99 LTFKSMVAFLRD 110 (112)
T ss_pred hhHHHHHHHhhC
Confidence 899999999875
No 312
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=96.81 E-value=0.0025 Score=47.41 Aligned_cols=54 Identities=15% Similarity=0.392 Sum_probs=37.6
Q ss_pred EEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHH----HhCCCCcccEEEEEeCCe
Q 010469 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELA----HEYDVQGFPTIYFFVDGQ 178 (510)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~----~~~~v~~~P~~~~~~~g~ 178 (510)
++.|+.+||++|......|.+. ++.+-.+|.+.++... +..+..++|++ |.+|+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~---------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~ 58 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK---------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDV 58 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc---------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCE
Confidence 4678899999999999988752 3555556666665443 33477889997 34553
No 313
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=96.81 E-value=0.0019 Score=56.49 Aligned_cols=44 Identities=11% Similarity=0.113 Sum_probs=37.6
Q ss_pred CCcEEEEEe-CCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 010469 452 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 496 (510)
Q Consensus 452 ~~~vlv~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~ 496 (510)
++.+||+|| +.||+.|....+.+.++++.+.+ .++.++.|.++.
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~-~~v~vv~Is~d~ 73 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK-LNAEVLGVSTDS 73 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEecCC
Confidence 578999999 89999999999999999999975 467777777654
No 314
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=96.78 E-value=0.0011 Score=57.79 Aligned_cols=28 Identities=7% Similarity=-0.051 Sum_probs=26.4
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHH
Q 010469 452 SKDVLLEIYAPWCGHCQAFEPTYNKLAK 479 (510)
Q Consensus 452 ~~~vlv~f~~~~c~~C~~~~~~~~~~a~ 479 (510)
++.++|.|||+||++|+.-+|.+.++++
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~ 86 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKA 86 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHH
Confidence 7899999999999999999999999954
No 315
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.72 E-value=0.0087 Score=62.17 Aligned_cols=99 Identities=13% Similarity=0.252 Sum_probs=74.9
Q ss_pred EEeChhcHHHHHhC-CCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEE
Q 010469 96 VVLKERNFSDVIEN-NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFF 174 (510)
Q Consensus 96 ~~l~~~~~~~~~~~-~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~ 174 (510)
..|+++..+.+-.- ++.-+-.|..+.||+|......+.+++... ++|..-.+|..+.++++++|++.++|++++
T Consensus 102 ~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~----p~i~~~~id~~~~~~~~~~~~v~~VP~~~i- 176 (515)
T TIGR03140 102 PKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLN----PNISHTMIDGALFQDEVEALGIQGVPAVFL- 176 (515)
T ss_pred CCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC----CCceEEEEEchhCHHHHHhcCCcccCEEEE-
Confidence 34555555554432 345588899999999998888888777653 358888899999999999999999999976
Q ss_pred eCCeeeeecCCCCHHHHHHHHHHHcCC
Q 010469 175 VDGQHKAYNGGRTKDAIVTWIKKKIGP 201 (510)
Q Consensus 175 ~~g~~~~y~g~~~~~~l~~~i~~~~~~ 201 (510)
+|. ..+.|..+.+.+.+.+.+..+.
T Consensus 177 -~~~-~~~~g~~~~~~~~~~l~~~~~~ 201 (515)
T TIGR03140 177 -NGE-EFHNGRMDLAELLEKLEETAGV 201 (515)
T ss_pred -CCc-EEEecCCCHHHHHHHHhhccCc
Confidence 453 3477888888887777665433
No 316
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=96.72 E-value=0.0023 Score=53.71 Aligned_cols=44 Identities=16% Similarity=0.223 Sum_probs=37.0
Q ss_pred CCcEEEEEe-CCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 010469 452 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 496 (510)
Q Consensus 452 ~~~vlv~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~ 496 (510)
+++++|+|| +.||+.|....+.+.++.+.+.. .++.++.|..+.
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vv~is~d~ 67 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA-LGAVVIGVSPDS 67 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEcCCC
Confidence 688999999 68999999999999999998865 467777777653
No 317
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=96.71 E-value=0.0027 Score=53.22 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=37.2
Q ss_pred cCCcEEEEEe-CCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 010469 451 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 495 (510)
Q Consensus 451 ~~~~vlv~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~ 495 (510)
.+++++|+|| +.||+.|....|.+.++.+.++. .++.|+.|..+
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~-~~~~~i~is~d 65 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAK-GGAEVLGVSVD 65 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEeCC
Confidence 4688999999 78999999999999999999854 46778877764
No 318
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=96.70 E-value=0.0019 Score=48.73 Aligned_cols=38 Identities=16% Similarity=0.404 Sum_probs=29.4
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCC
Q 010469 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497 (510)
Q Consensus 456 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n 497 (510)
++.|+++||++|+.+++.+.+++ ... .+.+..+|.+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~--~~~~~~v~~~~~ 38 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP--AYEVVELDQLSN 38 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC--CCEEEEeeCCCC
Confidence 47899999999999999999876 332 467777776543
No 319
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.69 E-value=0.0053 Score=45.89 Aligned_cols=77 Identities=18% Similarity=0.312 Sum_probs=59.2
Q ss_pred EEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCC---eeeeecCCCCHHH
Q 010469 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG---QHKAYNGGRTKDA 190 (510)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g---~~~~y~g~~~~~~ 190 (510)
++.|..+.|+-|......+..+... ..+.+-.||.++++.+..+|+. .+|.+.+-..+ ......+..+.+.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~-----~~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~ 75 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE-----FPFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQ 75 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT-----STCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh-----cCceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHH
Confidence 7889999999999999998876432 2589999999999999999996 59996554311 1345667889999
Q ss_pred HHHHHH
Q 010469 191 IVTWIK 196 (510)
Q Consensus 191 l~~~i~ 196 (510)
+.+||+
T Consensus 76 L~~~L~ 81 (81)
T PF05768_consen 76 LRAWLE 81 (81)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 999885
No 320
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=96.69 E-value=0.0026 Score=46.33 Aligned_cols=36 Identities=17% Similarity=0.453 Sum_probs=28.9
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcC
Q 010469 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 499 (510)
Q Consensus 456 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~ 499 (510)
+..|+++||++|+.+++.+.+ .++.+..+|++.++.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~--------~~i~~~~vdi~~~~~ 37 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS--------KGIAFEEIDVEKDSA 37 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH--------CCCeEEEEeccCCHH
Confidence 568999999999999988865 147788889887653
No 321
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.67 E-value=0.011 Score=51.89 Aligned_cols=33 Identities=27% Similarity=0.498 Sum_probs=29.6
Q ss_pred CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhh
Q 010469 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKS 141 (510)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~ 141 (510)
++++.++.|+...||+|+.+.+.+..+.+++.+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~ 46 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK 46 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC
Confidence 467899999999999999999999999888744
No 322
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.64 E-value=0.0062 Score=44.70 Aligned_cols=54 Identities=15% Similarity=0.278 Sum_probs=37.9
Q ss_pred EEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHH----hCCCC-cccEEEEEeCCe
Q 010469 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAH----EYDVQ-GFPTIYFFVDGQ 178 (510)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~----~~~v~-~~P~~~~~~~g~ 178 (510)
++.|+.+||++|......|.+. ++.+-.+|.+.+++..+ ..+.. ++|+++ .+|+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~---------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~--i~g~ 60 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK---------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF--IGDV 60 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC---------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE--ECCE
Confidence 5788999999999998888652 36666777776654433 34665 899773 4553
No 323
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=96.63 E-value=0.0059 Score=48.86 Aligned_cols=51 Identities=24% Similarity=0.462 Sum_probs=36.2
Q ss_pred chhhHhh---ccCCcEEEEEeCC-------CChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 010469 443 NFDEIVL---DESKDVLLEIYAP-------WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 495 (510)
Q Consensus 443 ~f~~~v~---~~~~~vlv~f~~~-------~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~ 495 (510)
.|.+.+. +++++++|+|+++ ||+.|.+..|.+.++-..... +..|+.+.+.
T Consensus 7 ~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~--~~~lv~v~VG 67 (119)
T PF06110_consen 7 EFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE--NARLVYVEVG 67 (119)
T ss_dssp HHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST--TEEEEEEE--
T ss_pred HHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC--CceEEEEEcC
Confidence 4555554 3457899999865 999999999999998877554 7788877764
No 324
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=96.60 E-value=0.0049 Score=48.07 Aligned_cols=53 Identities=23% Similarity=0.304 Sum_probs=34.8
Q ss_pred EEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHH-------HHHhCCCCcccEEEEEeCC
Q 010469 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENE-------LAHEYDVQGFPTIYFFVDG 177 (510)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~-------~~~~~~v~~~P~~~~~~~g 177 (510)
++.|..+|||+|++....|.+. ++.+..+|.+..++ +.+..|...+|.+ |.+|
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~---------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g 69 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL---------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGG 69 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc---------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECC
Confidence 6778999999999998877653 23344455544322 3333467899997 4455
No 325
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=96.59 E-value=0.0091 Score=46.33 Aligned_cols=60 Identities=22% Similarity=0.354 Sum_probs=39.5
Q ss_pred HHHHHhCCCeEEEEEE----CCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHH----HhCCCCcccEEE
Q 010469 103 FSDVIENNKFVMVEFY----APWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELA----HEYDVQGFPTIY 172 (510)
Q Consensus 103 ~~~~~~~~~~~~v~f~----a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~----~~~~v~~~P~~~ 172 (510)
.+++++++++ +|+-. ++|||+|.+....|.+. ++.+..+|..+++++. +..|...+|.++
T Consensus 5 v~~~i~~~~V-vvf~kg~~~~~~Cp~C~~ak~lL~~~---------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf 72 (97)
T TIGR00365 5 IKEQIKENPV-VLYMKGTPQFPQCGFSARAVQILKAC---------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY 72 (97)
T ss_pred HHHHhccCCE-EEEEccCCCCCCCchHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE
Confidence 4455665543 44333 38999999998888763 3566677876666443 344677899884
No 326
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.58 E-value=0.0076 Score=44.02 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=37.5
Q ss_pred EEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHH----HHHhCCCCcccEE
Q 010469 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENE----LAHEYDVQGFPTI 171 (510)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~----~~~~~~v~~~P~~ 171 (510)
++.|..+||++|++....|++. ++.+..+|+.+++. +.+..+-..+|++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~---------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v 55 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK---------GLPYVEINIDIFPERKAELEERTGSSVVPQI 55 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC---------CCceEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence 6778999999999998888752 46777778877664 4445567788988
No 327
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=96.57 E-value=0.0032 Score=46.46 Aligned_cols=36 Identities=25% Similarity=0.458 Sum_probs=26.9
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcC
Q 010469 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 499 (510)
Q Consensus 456 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~ 499 (510)
++.||++||++|+++++.+.+++ +.+-.+|++.++.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~--------~~~~~idi~~~~~ 37 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG--------AAYEWVDIEEDEG 37 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC--------CceEEEeCcCCHh
Confidence 56899999999999999987653 3344577765543
No 328
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=96.51 E-value=0.00078 Score=59.19 Aligned_cols=65 Identities=25% Similarity=0.475 Sum_probs=53.4
Q ss_pred ceEEEeCcchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccce
Q 010469 435 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 503 (510)
Q Consensus 435 ~~~~l~~~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~ 503 (510)
.+..++.+|+.+.+ ...+++.|+||||+.|+...|.+...|.--.+ -.+.++++|++.|....-.
T Consensus 25 ~~~~~~eenw~~~l---~gewmi~~~ap~~psc~~~~~~~~~~a~~s~d-L~v~va~VDvt~npgLsGR 89 (248)
T KOG0913|consen 25 KLTRIDEENWKELL---TGEWMIEFGAPWCPSCSDLIPHLENFATVSLD-LGVKVAKVDVTTNPGLSGR 89 (248)
T ss_pred eeEEecccchhhhh---chHHHHHhcCCCCccccchHHHHhccCCccCC-CceeEEEEEEEecccccee
Confidence 56789999998866 35689999999999999999999988764443 4799999999988876543
No 329
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.44 E-value=0.042 Score=43.31 Aligned_cols=89 Identities=19% Similarity=0.356 Sum_probs=66.6
Q ss_pred ChhcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeC--
Q 010469 99 KERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVD-- 176 (510)
Q Consensus 99 ~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~-- 176 (510)
+.++++..+...++++|-|+..--. .....|.++|..+++ ++.|+... +..+..++++ .|++++|++
T Consensus 7 s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~---d~~F~~~~---~~~~~~~~~~--~~~ivl~~p~~ 75 (104)
T cd03069 7 TEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRE---SFRFAHTS---DKQLLEKYGY--GEGVVLFRPPR 75 (104)
T ss_pred CHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhh---cCEEEEEC---hHHHHHhcCC--CCceEEEechh
Confidence 3455777777788888888876443 466889999999977 67887654 3567788888 688999942
Q ss_pred ------CeeeeecCCCCHHHHHHHHHHH
Q 010469 177 ------GQHKAYNGGRTKDAIVTWIKKK 198 (510)
Q Consensus 177 ------g~~~~y~g~~~~~~l~~~i~~~ 198 (510)
.....|.|..+.+.|.+||+..
T Consensus 76 ~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 76 LSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hhcccCcccccccCcCCHHHHHHHHHhh
Confidence 2345699999999999999754
No 330
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.33 E-value=0.013 Score=42.61 Aligned_cols=66 Identities=17% Similarity=0.367 Sum_probs=44.1
Q ss_pred EEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHH---HHHhCCCCcccEEEEEeCCeeeeecCCCCHHH
Q 010469 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENE---LAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDA 190 (510)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~---~~~~~~v~~~P~~~~~~~g~~~~y~g~~~~~~ 190 (510)
++.|..+||++|.+....|.+. ++.+..+|.+++.. +....+...+|.+ |.+|..+ | ..+.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~---------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~i---g--g~~~ 66 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN---------GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELI---G--GSDD 66 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc---------CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEE---e--CHHH
Confidence 6789999999999998877742 35666666665542 3333588899997 4556432 3 2566
Q ss_pred HHHHH
Q 010469 191 IVTWI 195 (510)
Q Consensus 191 l~~~i 195 (510)
+.+|+
T Consensus 67 l~~~l 71 (72)
T cd03029 67 LEKYF 71 (72)
T ss_pred HHHHh
Confidence 66664
No 331
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.32 E-value=0.074 Score=41.73 Aligned_cols=93 Identities=9% Similarity=0.251 Sum_probs=68.5
Q ss_pred EEe-ChhcHHHHHh-CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEE
Q 010469 96 VVL-KERNFSDVIE-NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (510)
Q Consensus 96 ~~l-~~~~~~~~~~-~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~ 173 (510)
..+ +...++.++. .+..++|-|+..--. .....|.++|..+++ .+.|+... +..+...+++. .|.+++
T Consensus 3 ~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~---d~~F~~~~---~~~~~~~~~~~-~~~i~l 72 (102)
T cd03066 3 EIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHP---YIKFFATF---DSKVAKKLGLK-MNEVDF 72 (102)
T ss_pred eEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhc---CCEEEEEC---cHHHHHHcCCC-CCcEEE
Confidence 344 4456888887 788888888876444 356789999999876 57786654 35667777765 799999
Q ss_pred EeC-C-eeeee-cCCCCHHHHHHHHHHH
Q 010469 174 FVD-G-QHKAY-NGGRTKDAIVTWIKKK 198 (510)
Q Consensus 174 ~~~-g-~~~~y-~g~~~~~~l~~~i~~~ 198 (510)
+++ . ....| .|..+.+.|.+||...
T Consensus 73 ~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 73 YEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred eCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 975 3 44668 7888999999999754
No 332
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=96.28 E-value=0.0072 Score=53.20 Aligned_cols=44 Identities=11% Similarity=0.070 Sum_probs=37.3
Q ss_pred CCcEEEEEe-CCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 010469 452 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 496 (510)
Q Consensus 452 ~~~vlv~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~ 496 (510)
+++++|+|| +.||+.|....+.|.++.+.+.. .++.++-|+.+.
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~-~g~~vigIS~D~ 75 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQK-LGVDVYSVSTDT 75 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEeCCC
Confidence 578999999 99999999999999999999965 457777777654
No 333
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.27 E-value=0.0065 Score=45.92 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=33.5
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCC
Q 010469 455 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497 (510)
Q Consensus 455 vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n 497 (510)
-++.|+.+||+.|+++.+.+.+++.... ++.+..+|++.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~---~i~~~~idi~~~ 41 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD---DFDYRYVDIHAE 41 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc---CCcEEEEECCCC
Confidence 3678999999999999999999987553 578888888765
No 334
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.051 Score=45.72 Aligned_cols=89 Identities=20% Similarity=0.323 Sum_probs=61.2
Q ss_pred hCCCeEEEEEEC-CCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCc---------------------ccHHHHHhCCC
Q 010469 108 ENNKFVMVEFYA-PWCGHCQALAPEYAAAATELKSANESVVLAKVDAT---------------------EENELAHEYDV 165 (510)
Q Consensus 108 ~~~~~~~v~f~a-~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~---------------------~~~~~~~~~~v 165 (510)
..++++|++||- .|+|-|-.++-.|++...+++..+ +.++.|..+ .+..+++.|||
T Consensus 28 ~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~--a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv 105 (157)
T COG1225 28 LRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG--AVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGV 105 (157)
T ss_pred hcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC--CEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCc
Confidence 367788999984 799999999999999999998854 555555433 33467888876
Q ss_pred C------------cccEEEEEe-CCe-eeeecC---CCCHHHHHHHHHHH
Q 010469 166 Q------------GFPTIYFFV-DGQ-HKAYNG---GRTKDAIVTWIKKK 198 (510)
Q Consensus 166 ~------------~~P~~~~~~-~g~-~~~y~g---~~~~~~l~~~i~~~ 198 (510)
. ..++++++. +|+ ...+.. .-..+.+.+++.+.
T Consensus 106 ~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 106 WGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred ccccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 3 357888886 673 344432 23446666666553
No 335
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=96.15 E-value=0.0087 Score=51.11 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=36.5
Q ss_pred cCCcEEEEEeCC-CChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 010469 451 ESKDVLLEIYAP-WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 495 (510)
Q Consensus 451 ~~~~vlv~f~~~-~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~ 495 (510)
.++.+||+||+. ||+.|....+.+.++.+.+++ .++.++.|+.+
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~-~~v~vi~Is~d 73 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK-AGVVVLGISTD 73 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEcCC
Confidence 467899999975 688899999999999998865 46888888765
No 336
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.10 E-value=0.057 Score=56.19 Aligned_cols=142 Identities=13% Similarity=0.060 Sum_probs=90.7
Q ss_pred ceEEEEEec-cchhhHHHHHHHHHHhccCceEEEEEEcCCcccccchhhhcCCCCCCCcEEEEeeCCCCCcccCCCCCCH
Q 010469 326 NQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTL 404 (510)
Q Consensus 326 ~~~v~~~~~-~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~~~~~~l~~~~gi~~~~~P~~~i~~~~~~~~y~~~~~~t~ 404 (510)
..+.+|.+. +.+.+..+.++++|.-- +++.+...+. . ...|.+.+...+......|-|-+.=
T Consensus 21 v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~~---------------~-~~~p~~~~~~~~~~~~i~f~g~P~g 83 (517)
T PRK15317 21 IELVASLDDSEKSAELKELLEEIASLS-DKITVEEDSL---------------D-VRKPSFSITRPGEDTGVRFAGIPMG 83 (517)
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEccC---------------C-CCCCEEEEEcCCccceEEEEecCcc
Confidence 445566654 45677777777777644 5566533210 0 2358887775443344556677788
Q ss_pred HHHHHHHHHhhcCcccccccCCCCCCCCCCceEEEeCcchhhHhhccCCc-EEEEEeCCCChhhhhhhHHHHHHHHHhcC
Q 010469 405 DKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRG 483 (510)
Q Consensus 405 e~i~~Fi~~~~~Gkl~~~~kSe~~p~~~~~~~~~l~~~~f~~~v~~~~~~-vlv~f~~~~c~~C~~~~~~~~~~a~~~~~ 483 (510)
.++..||..+++= |.+ -..|+... .+.+..-.++ -+..|+++.|++|......+.+++..-.
T Consensus 84 ~Ef~s~i~~i~~~-------~~~--------~~~l~~~~-~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~- 146 (517)
T PRK15317 84 HEFTSLVLALLQV-------GGH--------PPKLDQEV-IEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP- 146 (517)
T ss_pred HHHHHHHHHHHHh-------cCC--------CCCCCHHH-HHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-
Confidence 8899999998761 111 12233333 3334443444 4778999999999999999999887543
Q ss_pred CCcEEEEEEeCCCCcCccce
Q 010469 484 VDSIVIAKMDGTTNEHHRAK 503 (510)
Q Consensus 484 ~~~~~~~~id~~~n~~~~~~ 503 (510)
+|.+-.||...++....+
T Consensus 147 --~i~~~~id~~~~~~~~~~ 164 (517)
T PRK15317 147 --NITHTMIDGALFQDEVEA 164 (517)
T ss_pred --CceEEEEEchhCHhHHHh
Confidence 688999998777666554
No 337
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=96.00 E-value=0.022 Score=43.48 Aligned_cols=48 Identities=23% Similarity=0.497 Sum_probs=33.6
Q ss_pred CCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHH----HHhCCCCcccEEEEEeCCe
Q 010469 120 PWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENEL----AHEYDVQGFPTIYFFVDGQ 178 (510)
Q Consensus 120 ~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~----~~~~~v~~~P~~~~~~~g~ 178 (510)
+||++|++....|.+. ++.+..+|..+++++ .+..|...+|.+ |.+|+
T Consensus 21 ~~Cp~C~~ak~~L~~~---------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~ 72 (90)
T cd03028 21 PRCGFSRKVVQILNQL---------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGE 72 (90)
T ss_pred CCCcHHHHHHHHHHHc---------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCE
Confidence 7999999998888763 356666776666544 334477889997 44564
No 338
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=95.99 E-value=0.021 Score=44.01 Aligned_cols=59 Identities=25% Similarity=0.362 Sum_probs=42.0
Q ss_pred EEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEe--Cccc------------------------------HHHHH
Q 010469 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVD--ATEE------------------------------NELAH 161 (510)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd--~~~~------------------------------~~~~~ 161 (510)
++.|+.+.|++|..+.+.+.++.....+ ++.+..+. .... .....
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG---GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALAR 77 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC---cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 4679999999999999999998744444 45444433 2221 13456
Q ss_pred hCCCCcccEEEEEe
Q 010469 162 EYDVQGFPTIYFFV 175 (510)
Q Consensus 162 ~~~v~~~P~~~~~~ 175 (510)
++|+.++|++++..
T Consensus 78 ~~g~~g~Pt~v~~~ 91 (98)
T cd02972 78 ALGVTGTPTFVVNG 91 (98)
T ss_pred HcCCCCCCEEEECC
Confidence 78999999998754
No 339
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.023 Score=42.29 Aligned_cols=51 Identities=16% Similarity=0.363 Sum_probs=35.7
Q ss_pred EEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccH-----HHHHhC-CCCcccEEEE
Q 010469 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN-----ELAHEY-DVQGFPTIYF 173 (510)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-----~~~~~~-~v~~~P~~~~ 173 (510)
++.|..+|||+|++....|.+. ++.+..+|.++.. +..++. |.+++|++++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~---------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK---------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc---------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 6678889999999998887721 4666665555444 334444 7899999765
No 340
>PRK10638 glutaredoxin 3; Provisional
Probab=95.93 E-value=0.022 Score=42.76 Aligned_cols=54 Identities=13% Similarity=0.278 Sum_probs=38.2
Q ss_pred EEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHH----HHhCCCCcccEEEEEeCCe
Q 010469 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENEL----AHEYDVQGFPTIYFFVDGQ 178 (510)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~----~~~~~v~~~P~~~~~~~g~ 178 (510)
++.|..+||++|++....|++. ++.+..+|++.+++. .+..+...+|+++ .+|.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~---------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~--~~g~ 61 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK---------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIF--IDAQ 61 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc---------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCE
Confidence 6678889999999998888752 366666777666533 3445777899873 3553
No 341
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=95.89 E-value=0.068 Score=47.95 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=47.0
Q ss_pred CCCccCCCCcEEeChhc---HHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhh
Q 010469 86 KEPEIDDKDVVVLKERN---FSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKS 141 (510)
Q Consensus 86 ~~~~~~~~~v~~l~~~~---~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~ 141 (510)
.-....+..|+.+++++ +-+..++++|.+|+|-+-.||+-..-.+.|+++++++.+
T Consensus 75 ~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d 133 (237)
T PF00837_consen 75 LGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD 133 (237)
T ss_pred CCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhh
Confidence 33445667799999988 334557889999999999999999999999999999987
No 342
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=95.86 E-value=0.0086 Score=55.22 Aligned_cols=88 Identities=20% Similarity=0.425 Sum_probs=71.9
Q ss_pred CCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEe-CcccHHHHHhCCCCcccEEEEEeCCeeeeecCCCCH
Q 010469 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVD-ATEENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTK 188 (510)
Q Consensus 110 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd-~~~~~~~~~~~~v~~~P~~~~~~~g~~~~y~g~~~~ 188 (510)
..++-+.||+.||+..+...|.+.-....+.. +....|+ ....++...++++.+.|+..+...--...|.|.++.
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~----i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~~~~~~~~r~l 151 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS----IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTCPASYRGERDL 151 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccc----cccccHHHHhhcccchhccccccCCcceeeccccchhhcccccH
Confidence 56889999999999999999999988777653 3333332 233456788999999999999888888899999999
Q ss_pred HHHHHHHHHHcCC
Q 010469 189 DAIVTWIKKKIGP 201 (510)
Q Consensus 189 ~~l~~~i~~~~~~ 201 (510)
..+..|..+.++-
T Consensus 152 ~sLv~fy~~i~~~ 164 (319)
T KOG2640|consen 152 ASLVNFYTEITPM 164 (319)
T ss_pred HHHHHHHHhhccc
Confidence 9999999888853
No 343
>PRK13190 putative peroxiredoxin; Provisional
Probab=95.86 E-value=0.013 Score=52.57 Aligned_cols=44 Identities=14% Similarity=0.143 Sum_probs=35.7
Q ss_pred CCcEEE-EEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 010469 452 SKDVLL-EIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 496 (510)
Q Consensus 452 ~~~vlv-~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~ 496 (510)
+++++| +||+.||+.|...++.+.++.+.++. .++.++.+.++.
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~-~~~~vi~vS~D~ 71 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKK-LGVELVGLSVDS 71 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 566655 68999999999999999999999875 467777777664
No 344
>PRK15000 peroxidase; Provisional
Probab=95.85 E-value=0.015 Score=51.96 Aligned_cols=45 Identities=9% Similarity=0.157 Sum_probs=38.2
Q ss_pred cCCcEEEEEeCC-CChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 010469 451 ESKDVLLEIYAP-WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 496 (510)
Q Consensus 451 ~~~~vlv~f~~~-~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~ 496 (510)
.+++++|+||+. ||+.|....+.|.++++.++. .++.++.+.++.
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~-~g~~vigvS~D~ 78 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQK-RGVEVVGVSFDS 78 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCC
Confidence 367999999995 999999999999999999975 467788788764
No 345
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=95.83 E-value=0.18 Score=40.08 Aligned_cols=104 Identities=20% Similarity=0.239 Sum_probs=66.8
Q ss_pred eecCCCchhhhccCCccceEEEEEeccchhhHHHHHHHHHHh---ccCceEEEEEEcCC--cccccchhhhcCCCCCCCc
Q 010469 309 TIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKS---FKGKLIFVYVQMDN--EDVGKPVSEYFGITGEAPK 383 (510)
Q Consensus 309 ~~lt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~A~~---~~~~~~f~~vd~~~--~~~~~~l~~~~gi~~~~~P 383 (510)
-.|+.-++..+...- +.++|=|...=.+-+-++.+.++|++ -.+++.++.|-+.+ +.-+.++.+.|+++..+.|
T Consensus 7 v~LD~~tFdKvi~kf-~~~LVKFD~ayPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fP 85 (126)
T PF07912_consen 7 VPLDELTFDKVIPKF-KYVLVKFDVAYPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFP 85 (126)
T ss_dssp EEESTTHHHHHGGGS-SEEEEEEEESS--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-S
T ss_pred eeccceehhheeccC-ceEEEEEeccCCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCC
Confidence 456666777766544 45666666664555667788888833 33468888886544 1235678899999988899
Q ss_pred EEEEeeCCCCC--cccCCCCCCHHHHHHHHHH
Q 010469 384 VLAYTGNDDAK--KHILDGELTLDKIKTFGED 413 (510)
Q Consensus 384 ~~~i~~~~~~~--~y~~~~~~t~e~i~~Fi~~ 413 (510)
++.++..+... .|+..++++.++|..|+..
T Consensus 86 v~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~ 117 (126)
T PF07912_consen 86 VIYLFVGDKEEPVRYPFDGDVTADNLQRFVKS 117 (126)
T ss_dssp EEEEEESSTTSEEEE-TCS-S-HHHHHHHHHH
T ss_pred EEEEecCCCCCCccCCccCCccHHHHHHHHHh
Confidence 99888744333 4455789999999999976
No 346
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=95.67 E-value=0.043 Score=47.90 Aligned_cols=26 Identities=27% Similarity=0.565 Sum_probs=21.8
Q ss_pred EEECCCChHHhhhhHHHHHHHHHHhh
Q 010469 116 EFYAPWCGHCQALAPEYAAAATELKS 141 (510)
Q Consensus 116 ~f~a~wC~~C~~~~p~~~~~~~~~~~ 141 (510)
+|..|+|+.|-...|.|.++..++..
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~ 27 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN 27 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC
Confidence 58899999999999999999999877
No 347
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=95.67 E-value=0.0097 Score=50.35 Aligned_cols=50 Identities=24% Similarity=0.448 Sum_probs=35.0
Q ss_pred hccCCcEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCCcEEEEEEeCCCCcCc
Q 010469 449 LDESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEHH 500 (510)
Q Consensus 449 ~~~~~~vlv~f~~~~c~~C~~~~~~~---~~~a~~~~~~~~~~~~~id~~~n~~~ 500 (510)
...+|+++|.++++||..|+.|.... .++|+.++. +++-+++|.++.+..
T Consensus 34 k~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~--~FI~VkvDree~Pdi 86 (163)
T PF03190_consen 34 KKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR--NFIPVKVDREERPDI 86 (163)
T ss_dssp HHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH--H-EEEEEETTT-HHH
T ss_pred HhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC--CEEEEEeccccCccH
Confidence 34578999999999999999999744 678888875 788899997765443
No 348
>PRK13191 putative peroxiredoxin; Provisional
Probab=95.59 E-value=0.018 Score=52.02 Aligned_cols=45 Identities=9% Similarity=0.078 Sum_probs=36.4
Q ss_pred CCcEEE-EEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCC
Q 010469 452 SKDVLL-EIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497 (510)
Q Consensus 452 ~~~vlv-~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n 497 (510)
+++++| +|++.||+.|....+.|.+++..++. .++.++.++++..
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~-~g~~VigvS~Ds~ 78 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKK-LNTELIGLSVDSN 78 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEECCCH
Confidence 566555 78999999999999999999999965 3677777777644
No 349
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=95.40 E-value=0.31 Score=39.43 Aligned_cols=75 Identities=19% Similarity=0.273 Sum_probs=50.0
Q ss_pred EEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCc---ccEEEEEeCCeeeeecCCCCHH
Q 010469 113 VMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQG---FPTIYFFVDGQHKAYNGGRTKD 189 (510)
Q Consensus 113 ~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~---~P~~~~~~~g~~~~y~g~~~~~ 189 (510)
-++.++.|.|+=|......++ . .++.+-.+..++-..+-++++|.. --.+.++ +|. ...|-...+
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk-------~--~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI-~Gy--~vEGHVPa~ 94 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMK-------A--NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI-NGY--YVEGHVPAE 94 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHH-------h--CCcEEEEeecCcHHHHHHhcCCChhhccccEEEE-cCE--EEeccCCHH
Confidence 378899999999988766655 2 147777777667777778888751 1123232 343 345778888
Q ss_pred HHHHHHHHHc
Q 010469 190 AIVTWIKKKI 199 (510)
Q Consensus 190 ~l~~~i~~~~ 199 (510)
.+..++.+.-
T Consensus 95 aI~~ll~~~p 104 (149)
T COG3019 95 AIARLLAEKP 104 (149)
T ss_pred HHHHHHhCCC
Confidence 8888887543
No 350
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=95.36 E-value=0.14 Score=44.01 Aligned_cols=78 Identities=18% Similarity=0.369 Sum_probs=61.5
Q ss_pred CCcEEeChhcHHHHH---hCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCccc
Q 010469 93 KDVVVLKERNFSDVI---ENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFP 169 (510)
Q Consensus 93 ~~v~~l~~~~~~~~~---~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P 169 (510)
+.|..+++..|.+-+ ..+-+|+|+.|...-+-|.-+...|..++.+|.. +.|+.+-.+.. ...|--...|
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~----iKFVki~at~c---IpNYPe~nlP 163 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ----IKFVKIPATTC---IPNYPESNLP 163 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc----ceEEecccccc---cCCCcccCCC
Confidence 468999999988744 2356889999999999999999999999999876 88887743321 1234455689
Q ss_pred EEEEEeCC
Q 010469 170 TIYFFVDG 177 (510)
Q Consensus 170 ~~~~~~~g 177 (510)
|+++|..|
T Consensus 164 Tl~VY~~G 171 (240)
T KOG3170|consen 164 TLLVYHHG 171 (240)
T ss_pred eEEEeecc
Confidence 99999988
No 351
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=95.30 E-value=0.031 Score=51.77 Aligned_cols=44 Identities=11% Similarity=0.133 Sum_probs=35.6
Q ss_pred CCcEEEEEe-CCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 010469 452 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 496 (510)
Q Consensus 452 ~~~vlv~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~ 496 (510)
++++|++|| +.||+.|....+.|.++.+.++. .++.++-|.++.
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~-~gv~VigIS~Ds 142 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEE-RGVKVLGVSVDS 142 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCC
Confidence 467777777 89999999999999999999965 356677777654
No 352
>PRK13599 putative peroxiredoxin; Provisional
Probab=95.25 E-value=0.025 Score=51.09 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=36.3
Q ss_pred CCc-EEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 010469 452 SKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 496 (510)
Q Consensus 452 ~~~-vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~ 496 (510)
+++ ||+.|++.||+.|...++.|.++.+.+.. .++.++.+.++.
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~-~gv~vigIS~D~ 72 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKE-LNTELIGLSVDQ 72 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 556 46788999999999999999999999965 357777787765
No 353
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=95.23 E-value=0.026 Score=50.67 Aligned_cols=43 Identities=14% Similarity=0.209 Sum_probs=35.2
Q ss_pred Cc-EEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 010469 453 KD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 496 (510)
Q Consensus 453 ~~-vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~ 496 (510)
++ +|++||+.||+.|...++.+.++++.++. .++.++-+.++.
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~-~gv~vigvS~D~ 69 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKK-RNVKLIGLSVDS 69 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHH-cCCEEEEEECCC
Confidence 44 45588999999999999999999999975 467777777664
No 354
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=95.12 E-value=0.026 Score=42.66 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=30.5
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCC
Q 010469 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497 (510)
Q Consensus 456 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n 497 (510)
++.|..+||++|.+++..+.++..... .+.+..+|++.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~---~i~~~~idi~~~ 40 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA---DFEFRYIDIHAE 40 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC---CCcEEEEECCCC
Confidence 678999999999999999988764432 467777887653
No 355
>PRK10824 glutaredoxin-4; Provisional
Probab=95.05 E-value=0.07 Score=42.54 Aligned_cols=62 Identities=19% Similarity=0.366 Sum_probs=37.5
Q ss_pred cHHHHHhCCCeEEEEEEC----CCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHh----CCCCcccEEEE
Q 010469 102 NFSDVIENNKFVMVEFYA----PWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHE----YDVQGFPTIYF 173 (510)
Q Consensus 102 ~~~~~~~~~~~~~v~f~a----~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~----~~v~~~P~~~~ 173 (510)
-.++.++++++ +|.-.. ||||+|++....|.... +.+..+|..+++++... -|-+.+|.+++
T Consensus 7 ~v~~~I~~~~V-vvf~Kg~~~~p~Cpyc~~ak~lL~~~~---------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI 76 (115)
T PRK10824 7 KIQRQIAENPI-LLYMKGSPKLPSCGFSAQAVQALSACG---------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV 76 (115)
T ss_pred HHHHHHhcCCE-EEEECCCCCCCCCchHHHHHHHHHHcC---------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence 34556666543 443333 69999999988887642 33444555555544433 36678888754
No 356
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.02 E-value=0.25 Score=51.35 Aligned_cols=144 Identities=14% Similarity=0.074 Sum_probs=89.1
Q ss_pred cceEEEEEec-cchhhHHHHHHHHHHhccCceEEEEEEcCCcccccchhhhcCCCCCCCcEEEEeeCCCCCcccCCCCCC
Q 010469 325 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT 403 (510)
Q Consensus 325 ~~~~v~~~~~-~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~~~~~~l~~~~gi~~~~~P~~~i~~~~~~~~y~~~~~~t 403 (510)
+..+.+|.+. +.+++..+.+++++.-- +++.+..-+. +....|.+.+...+......|-|-+.
T Consensus 20 ~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~ki~~~~~~~---------------~~~~~p~~~~~~~~~~~~i~f~g~P~ 83 (515)
T TIGR03140 20 PVTLVLSAGSHEKSKELLELLDEIASLS-DKISLTQNTA---------------DTLRKPSFTILRDGADTGIRFAGIPG 83 (515)
T ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHhC-CCeEEEEecC---------------CcCCCCeEEEecCCcccceEEEecCC
Confidence 3445566654 34666666777777543 5566533221 11235888776443333345567777
Q ss_pred HHHHHHHHHHhhcCcccccccCCCCCCCCCCceEEEeCcchhhHhhccCCc-EEEEEeCCCChhhhhhhHHHHHHHHHhc
Q 010469 404 LDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLR 482 (510)
Q Consensus 404 ~e~i~~Fi~~~~~Gkl~~~~kSe~~p~~~~~~~~~l~~~~f~~~v~~~~~~-vlv~f~~~~c~~C~~~~~~~~~~a~~~~ 482 (510)
=.++..||..+++-. .+ -..|+.+..+ .+..-.++ -+-.|+++.|++|......+.+++....
T Consensus 84 g~Ef~s~i~~i~~~~-------~~--------~~~l~~~~~~-~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p 147 (515)
T TIGR03140 84 GHEFTSLVLAILQVG-------GH--------GPKLDEGIID-RIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP 147 (515)
T ss_pred cHHHHHHHHHHHHhc-------CC--------CCCCCHHHHH-HHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC
Confidence 788999999987621 11 1224333333 34433444 4778999999999998888888877644
Q ss_pred CCCcEEEEEEeCCCCcCccce
Q 010469 483 GVDSIVIAKMDGTTNEHHRAK 503 (510)
Q Consensus 483 ~~~~~~~~~id~~~n~~~~~~ 503 (510)
+|..-.+|....+....+
T Consensus 148 ---~i~~~~id~~~~~~~~~~ 165 (515)
T TIGR03140 148 ---NISHTMIDGALFQDEVEA 165 (515)
T ss_pred ---CceEEEEEchhCHHHHHh
Confidence 688888887766655554
No 357
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=94.89 E-value=0.034 Score=39.96 Aligned_cols=35 Identities=14% Similarity=0.255 Sum_probs=27.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCc
Q 010469 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 498 (510)
Q Consensus 456 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~ 498 (510)
++.|+++||++|+.+++.+.+.. +.+..+|+..+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~--------i~~~~~di~~~~ 36 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG--------IEFEEIDILEDG 36 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC--------CcEEEEECCCCH
Confidence 56799999999999999988653 556677877665
No 358
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=94.86 E-value=0.045 Score=39.53 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=25.9
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCC
Q 010469 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497 (510)
Q Consensus 456 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n 497 (510)
++.|+++||++|..++..+.+. ++.+..+|++.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~--------~i~~~~~~i~~~ 35 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER--------GIPFEEVDVDED 35 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC--------CCCeEEEeCCCC
Confidence 5789999999999998888762 355666777654
No 359
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=94.85 E-value=0.08 Score=45.16 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=39.6
Q ss_pred hCCCeEEEEEECCCChHHhhh-hHHHHHHHHHHhhcCCCe-EEEEEeCccc---HHHHHhCCC
Q 010469 108 ENNKFVMVEFYAPWCGHCQAL-APEYAAAATELKSANESV-VLAKVDATEE---NELAHEYDV 165 (510)
Q Consensus 108 ~~~~~~~v~f~a~wC~~C~~~-~p~~~~~~~~~~~~~~~v-~~~~vd~~~~---~~~~~~~~v 165 (510)
.++..+|+.|.+.||+.|..+ .+.|.+.++++...+ + .++.|.++.. ..+++++++
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g--~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG--VDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC--CCEEEEEECCCHHHHHHHHHhhCC
Confidence 344455666668899999999 999999999998744 4 3566655432 346667665
No 360
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.17 Score=39.44 Aligned_cols=62 Identities=18% Similarity=0.333 Sum_probs=40.1
Q ss_pred HHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccH-HHHH----hCCCCcccEEEE
Q 010469 103 FSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN-ELAH----EYDVQGFPTIYF 173 (510)
Q Consensus 103 ~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~~----~~~v~~~P~~~~ 173 (510)
++.++..+ + +|.|..+||++|+.....|.. + +....++.+|-..+. ++.+ .-+.+.+|.+++
T Consensus 7 v~~~i~~~-~-VVifSKs~C~~c~~~k~ll~~----~---~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 7 VRKMISEN-P-VVIFSKSSCPYCHRAKELLSD----L---GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred HHHHhhcC-C-EEEEECCcCchHHHHHHHHHh----C---CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence 45555544 3 667899999999997777765 2 235677777765543 3322 235668898754
No 361
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=94.67 E-value=0.045 Score=40.81 Aligned_cols=36 Identities=11% Similarity=0.354 Sum_probs=27.3
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCC
Q 010469 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497 (510)
Q Consensus 456 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n 497 (510)
++.|+++||++|..+.+.+.++.. .+.+..+|...+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~------~~~~~~v~~~~~ 37 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV------KPAVVELDQHED 37 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC------CcEEEEEeCCCC
Confidence 578999999999999999988644 245566665543
No 362
>PRK13189 peroxiredoxin; Provisional
Probab=94.66 E-value=0.044 Score=49.79 Aligned_cols=44 Identities=14% Similarity=0.072 Sum_probs=35.2
Q ss_pred CCcE-EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 010469 452 SKDV-LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 496 (510)
Q Consensus 452 ~~~v-lv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~ 496 (510)
++++ |++||+.||+.|....+.|.++++.++. .++.++.+.++.
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~-~~v~VigvS~D~ 79 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRE-LNTELIGLSIDQ 79 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCC
Confidence 5655 4577899999999999999999999965 457777777664
No 363
>PF13728 TraF: F plasmid transfer operon protein
Probab=94.59 E-value=0.071 Score=48.10 Aligned_cols=43 Identities=19% Similarity=0.263 Sum_probs=35.1
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCc
Q 010469 452 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 498 (510)
Q Consensus 452 ~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~ 498 (510)
++.-|++||.+.|+.|+.+.|++..+++.+. +.+..|+++...
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg----~~v~~vs~DG~~ 162 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYG----FSVIPVSLDGRP 162 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhC----CEEEEEecCCCC
Confidence 4678999999999999999999999999884 555666665443
No 364
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=94.59 E-value=0.02 Score=31.30 Aligned_cols=12 Identities=17% Similarity=0.326 Sum_probs=7.9
Q ss_pred HHHHHHhhhhhh
Q 010469 11 LTILLLFSPALA 22 (510)
Q Consensus 11 ~~~~l~~~~c~~ 22 (510)
+++++.|+||++
T Consensus 14 l~a~~~LagCss 25 (25)
T PF08139_consen 14 LLALFMLAGCSS 25 (25)
T ss_pred HHHHHHHhhccC
Confidence 344566899963
No 365
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=94.55 E-value=1.1 Score=40.12 Aligned_cols=101 Identities=25% Similarity=0.334 Sum_probs=63.0
Q ss_pred hhcHHHHHhCCCeEEEEEECCCCh-HHhhhhHHHHHHHHHHh-hcCCCe--EEEEEeCccc-H-----------------
Q 010469 100 ERNFSDVIENNKFVMVEFYAPWCG-HCQALAPEYAAAATELK-SANESV--VLAKVDATEE-N----------------- 157 (510)
Q Consensus 100 ~~~~~~~~~~~~~~~v~f~a~wC~-~C~~~~p~~~~~~~~~~-~~~~~v--~~~~vd~~~~-~----------------- 157 (510)
++.+...--++++++|.|.-+.|| -|-.....+..+.+++. ..+.++ .++.||=..+ +
T Consensus 57 G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~ 136 (207)
T COG1999 57 GKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIG 136 (207)
T ss_pred CCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeee
Confidence 333333333789999999989998 68889999999999987 444444 4555553221 1
Q ss_pred ---------HHHHhCCCCc---------------ccEEEEEe-CCee-eeecCCCCHHHHHHHHHHHcC
Q 010469 158 ---------ELAHEYDVQG---------------FPTIYFFV-DGQH-KAYNGGRTKDAIVTWIKKKIG 200 (510)
Q Consensus 158 ---------~~~~~~~v~~---------------~P~~~~~~-~g~~-~~y~g~~~~~~l~~~i~~~~~ 200 (510)
++++.|+|.. -..++++. +|+. ..|.+....+.+.+.+++.+.
T Consensus 137 ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~ 205 (207)
T COG1999 137 LTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLK 205 (207)
T ss_pred eeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhh
Confidence 4455555441 22344554 6633 456665567888877776653
No 366
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=94.49 E-value=0.064 Score=47.94 Aligned_cols=45 Identities=13% Similarity=0.098 Sum_probs=37.0
Q ss_pred CCcEEEEEe-CCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCC
Q 010469 452 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497 (510)
Q Consensus 452 ~~~vlv~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n 497 (510)
+++++|+|| +.||+.|....+.+.++++.+.. .++.++.|+++..
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~-~g~~vv~IS~d~~ 81 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNE-LNCEVLACSMDSE 81 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHH-cCCEEEEEeCCCH
Confidence 578999999 48899999888999999999976 4677777877644
No 367
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=94.33 E-value=0.082 Score=49.17 Aligned_cols=84 Identities=21% Similarity=0.368 Sum_probs=55.6
Q ss_pred HHHHHHhhcCccccccc-CCCCCCCCCCceEEEe-CcchhhHhhccC--CcEEEEEeCCCChhhhhhhHHHHHHHHHhcC
Q 010469 408 KTFGEDFLEGKLKPFFK-SDPIPETNDGDVKIVV-GNNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 483 (510)
Q Consensus 408 ~~Fi~~~~~Gkl~~~~k-Se~~p~~~~~~~~~l~-~~~f~~~v~~~~--~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~ 483 (510)
+.|++.+..-+++.... .+..| .-|.+.+++ ++.|-+.|.... ..|||+||.+.++.|..|...+..||..+..
T Consensus 100 eefL~~yR~qRm~El~~~~~~~~--~fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~ 177 (265)
T PF02114_consen 100 EEFLEQYREQRMQELKQKLQKGP--RFGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE 177 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC--cCceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc
Confidence 35666666655554321 11112 257888886 478888886543 4799999999999999999999999999975
Q ss_pred CCcEEEEEEeCCC
Q 010469 484 VDSIVIAKMDGTT 496 (510)
Q Consensus 484 ~~~~~~~~id~~~ 496 (510)
+.|++|.++.
T Consensus 178 ---vKFvkI~a~~ 187 (265)
T PF02114_consen 178 ---VKFVKIRASK 187 (265)
T ss_dssp ---SEEEEEEECG
T ss_pred ---eEEEEEehhc
Confidence 8899988754
No 368
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=94.29 E-value=0.036 Score=45.45 Aligned_cols=31 Identities=29% Similarity=0.562 Sum_probs=23.1
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhc
Q 010469 452 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLR 482 (510)
Q Consensus 452 ~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~ 482 (510)
....++.|..+|||+|....|.+.++++...
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p 71 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEANP 71 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhCC
Confidence 3457788999999999999999999999754
No 369
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.011 Score=52.00 Aligned_cols=51 Identities=14% Similarity=0.292 Sum_probs=43.6
Q ss_pred ccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccce
Q 010469 450 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 503 (510)
Q Consensus 450 ~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~ 503 (510)
...+..++.||++||..|..|..++..+++... ++.|++++.+.....+..
T Consensus 15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~---~~~~~k~~a~~~~eis~~ 65 (227)
T KOG0911|consen 15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK---NAQFLKLEAEEFPEISNL 65 (227)
T ss_pred hccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh---hheeeeehhhhhhHHHHH
Confidence 356789999999999999999999999999984 699999998877665544
No 370
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=94.09 E-value=0.071 Score=37.04 Aligned_cols=35 Identities=17% Similarity=0.305 Sum_probs=27.6
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCc
Q 010469 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 498 (510)
Q Consensus 456 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~ 498 (510)
++.|+.+||++|+..+..+.+. ++.+-.+|++.++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~--------~i~y~~~dv~~~~ 35 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK--------GIPYEEVDVDEDE 35 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--------TBEEEEEEGGGSH
T ss_pred cEEEEcCCCcCHHHHHHHHHHc--------CCeeeEcccccch
Confidence 5789999999999999888532 4777778877664
No 371
>PRK09810 entericidin A; Provisional
Probab=93.86 E-value=0.053 Score=33.75 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=15.1
Q ss_pred CchhhHHHHHHHHHHHhhhhhhhc
Q 010469 1 MSTRYILLLSLTILLLFSPALAKS 24 (510)
Q Consensus 1 M~k~~~~~~~~~~~l~~~~c~~~~ 24 (510)
|+|++++++ ++++++|+||....
T Consensus 1 mMkk~~~l~-~~~~~~L~aCNTv~ 23 (41)
T PRK09810 1 MMKRLIVLV-LLASTLLTGCNTAR 23 (41)
T ss_pred ChHHHHHHH-HHHHHHHhhhhhcc
Confidence 677765544 44556899997653
No 372
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=93.70 E-value=0.15 Score=43.21 Aligned_cols=40 Identities=20% Similarity=0.389 Sum_probs=30.8
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeC
Q 010469 452 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 494 (510)
Q Consensus 452 ~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~ 494 (510)
++.+|+.|+.++|++|+.+.|.+.++..... ++.+...+.
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~---~~~~~~~~~ 44 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDP---DVRVVFKEF 44 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCC---CceEEEEeC
Confidence 5678999999999999999999998876653 344444443
No 373
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=93.41 E-value=0.21 Score=43.46 Aligned_cols=100 Identities=17% Similarity=0.345 Sum_probs=72.5
Q ss_pred CcEEeC-hhcHHHHHhCC---CeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCccc
Q 010469 94 DVVVLK-ERNFSDVIENN---KFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFP 169 (510)
Q Consensus 94 ~v~~l~-~~~~~~~~~~~---~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P 169 (510)
.|.+++ ++.|-..+.+. -..+|+.|-+.-+-|..+-..+.-+|.++.. +.|+++-.+. ....++|....+|
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~----vKFckikss~-~gas~~F~~n~lP 213 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI----VKFCKIKSSN-TGASDRFSLNVLP 213 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc----eeEEEeeecc-ccchhhhcccCCc
Confidence 466664 46788877543 4678999999999999999999999988855 8999886543 4456788888999
Q ss_pred EEEEEeCCeee-ee-------cCCCCHHHHHHHHHHH
Q 010469 170 TIYFFVDGQHK-AY-------NGGRTKDAIVTWIKKK 198 (510)
Q Consensus 170 ~~~~~~~g~~~-~y-------~g~~~~~~l~~~i~~~ 198 (510)
++.+|++|..+ .| -.......+.+|++.+
T Consensus 214 ~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 214 TLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred eEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 99999998332 11 1223445566666554
No 374
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=93.25 E-value=0.18 Score=46.43 Aligned_cols=46 Identities=15% Similarity=0.079 Sum_probs=37.6
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCcc
Q 010469 452 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 501 (510)
Q Consensus 452 ~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~ 501 (510)
++.-|++||.+-|+.|.++.|++..+++.+. +.+.-|+++....+.
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg----i~v~~VS~DG~~~p~ 195 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG----ISVIPISVDGTLIPG 195 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhC----CeEEEEecCCCCCCC
Confidence 4578999999999999999999999999885 666666666665544
No 375
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=93.21 E-value=0.19 Score=50.38 Aligned_cols=51 Identities=12% Similarity=0.346 Sum_probs=37.3
Q ss_pred EEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHH---HHHh---------CCCCcccEEEE
Q 010469 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENE---LAHE---------YDVQGFPTIYF 173 (510)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~---~~~~---------~~v~~~P~~~~ 173 (510)
++.|..+|||+|++....|.+. +|.+-.+|+++++. +.++ .|.+++|++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~---------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN---------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC---------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 7789999999999998887752 46777787776653 2222 36778999855
No 376
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=93.03 E-value=0.13 Score=40.02 Aligned_cols=34 Identities=12% Similarity=0.149 Sum_probs=24.5
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCC
Q 010469 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497 (510)
Q Consensus 456 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n 497 (510)
++.|..+||++|.+++..+.+. ++.+..+|++.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~--------~i~~~~vdid~~ 43 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL--------GVNPAVHEIDKE 43 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCCCEEEEcCCC
Confidence 5669999999999999887754 244445666554
No 377
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=92.97 E-value=0.1 Score=41.87 Aligned_cols=57 Identities=9% Similarity=0.082 Sum_probs=40.4
Q ss_pred chhhHhh---ccCCcEEEEEeCC----CChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccc
Q 010469 443 NFDEIVL---DESKDVLLEIYAP----WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA 502 (510)
Q Consensus 443 ~f~~~v~---~~~~~vlv~f~~~----~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~ 502 (510)
+|.+.+. ...|.++|++|++ ||..|+..... .++.+.+++ ++.+...|++..+....
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~--~fv~w~~dv~~~eg~~l 68 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINT--RMLFWACSVAKPEGYRV 68 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHc--CEEEEEEecCChHHHHH
Confidence 5666553 4568999999999 88888544321 556666765 79999999987765333
No 378
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=92.96 E-value=0.15 Score=37.72 Aligned_cols=37 Identities=11% Similarity=0.231 Sum_probs=28.1
Q ss_pred CcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCC
Q 010469 453 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497 (510)
Q Consensus 453 ~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n 497 (510)
+.-++.|+.+||++|.+.+..+.+. ++.+-.+|++.+
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~--------gi~y~~idi~~~ 43 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK--------GYDFEEIPLGND 43 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc--------CCCcEEEECCCC
Confidence 4457789999999999999988742 456666777655
No 379
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=92.77 E-value=0.19 Score=36.45 Aligned_cols=35 Identities=9% Similarity=0.066 Sum_probs=27.6
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCc
Q 010469 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 498 (510)
Q Consensus 456 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~ 498 (510)
++.|+.+||+.|++++..+.+. ++.+-.+|+..++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~--------gi~~~~~di~~~~ 37 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK--------GLPYVEINIDIFP 37 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC--------CCceEEEECCCCH
Confidence 5678999999999999988852 4667777887655
No 380
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=92.74 E-value=0.32 Score=41.87 Aligned_cols=67 Identities=21% Similarity=0.266 Sum_probs=53.3
Q ss_pred CCceEEEe-CcchhhHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccce
Q 010469 433 DGDVKIVV-GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 503 (510)
Q Consensus 433 ~~~~~~l~-~~~f~~~v~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~ 503 (510)
.|...++. ..+|-+.+..+. -|++.||-|.-..|+-|-..++.+|+..-. ..|+++|++.-+....+
T Consensus 65 hG~y~ev~~Ekdf~~~~~kS~-kVVcHFY~~~f~RCKimDkhLe~LAk~h~e---TrFikvnae~~PFlv~k 132 (211)
T KOG1672|consen 65 HGEYEEVASEKDFFEEVKKSE-KVVCHFYRPEFFRCKIMDKHLEILAKRHVE---TRFIKVNAEKAPFLVTK 132 (211)
T ss_pred CceEEEeccHHHHHHHhhcCc-eEEEEEEcCCCcceehHHHHHHHHHHhccc---ceEEEEecccCceeeee
Confidence 44555665 557887776554 589999999999999999999999998764 79999999877666555
No 381
>PRK10329 glutaredoxin-like protein; Provisional
Probab=92.69 E-value=0.22 Score=37.11 Aligned_cols=35 Identities=9% Similarity=0.096 Sum_probs=28.1
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCc
Q 010469 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 498 (510)
Q Consensus 456 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~ 498 (510)
+..|..+||++|..++..+.+ .++.|-.+|++.++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~--------~gI~~~~idi~~~~ 37 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES--------RGFDFEMINVDRVP 37 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH--------CCCceEEEECCCCH
Confidence 567899999999999988864 25778888888655
No 382
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=92.67 E-value=1.6 Score=34.53 Aligned_cols=89 Identities=11% Similarity=0.210 Sum_probs=62.6
Q ss_pred ChhcHHHHHhCC-CeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCC
Q 010469 99 KERNFSDVIENN-KFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG 177 (510)
Q Consensus 99 ~~~~~~~~~~~~-~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g 177 (510)
+.++++..+... +.++|-|+..--. .....|.++|..+++ .+.|+... +..+..++++. .|.+++|++-
T Consensus 7 s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd---d~~F~~t~---~~~~~~~~~~~-~~~vvl~rp~ 76 (107)
T cd03068 7 TLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLRE---DYKFHHTF---DSEIFKSLKVS-PGQLVVFQPE 76 (107)
T ss_pred CHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhccc---CCEEEEEC---hHHHHHhcCCC-CCceEEECcH
Confidence 345577777666 7888888766433 456778899999877 67886654 35677788775 6788888533
Q ss_pred --------eeeeecCC-CCHHH-HHHHHHH
Q 010469 178 --------QHKAYNGG-RTKDA-IVTWIKK 197 (510)
Q Consensus 178 --------~~~~y~g~-~~~~~-l~~~i~~ 197 (510)
....|.|. .+.+. |.+||+.
T Consensus 77 ~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 77 KFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred HHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 34578877 56656 9999874
No 383
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=92.29 E-value=1.6 Score=38.57 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=29.3
Q ss_pred EEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEE
Q 010469 113 VMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKV 151 (510)
Q Consensus 113 ~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~v 151 (510)
.|..|+..-||+|-...+.+.++.+.+.+ ..|...-+
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~--~~i~~~p~ 37 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPD--VEIEWRPF 37 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTT--CEEEEEEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CcEEEecc
Confidence 37789999999999999999999999844 24555444
No 384
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=92.20 E-value=0.28 Score=35.69 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=26.9
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCC
Q 010469 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497 (510)
Q Consensus 456 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n 497 (510)
++.|..+||+.|.+++..+.+. ++.+-.+|++.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~i~i~~~ 35 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK--------GVDYEEIDVDGD 35 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC--------CCcEEEEECCCC
Confidence 5679999999999998888752 466777788765
No 385
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=92.14 E-value=0.32 Score=44.60 Aligned_cols=41 Identities=7% Similarity=-0.019 Sum_probs=33.1
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 010469 452 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 496 (510)
Q Consensus 452 ~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~ 496 (510)
++.-|++||.+-|+.|.++.|++..+++.+. +.+.-|+++.
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg----~~v~~VS~DG 183 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG----LSVIPVSVDG 183 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhC----CeEEEEecCC
Confidence 4578999999999999999999999999885 4444444444
No 386
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=91.79 E-value=0.91 Score=36.62 Aligned_cols=55 Identities=22% Similarity=0.356 Sum_probs=45.0
Q ss_pred chhhHhhc-cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCcc
Q 010469 443 NFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 501 (510)
Q Consensus 443 ~f~~~v~~-~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~ 501 (510)
.-++.+.. ..+.|++-|-..|-+.|..|...+.++|..+++ -..++-+|++ ++|+
T Consensus 10 ~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~--~a~IY~vDi~--~Vpd 65 (133)
T PF02966_consen 10 HVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN--FAVIYLVDID--EVPD 65 (133)
T ss_dssp HHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETT--TTHC
T ss_pred hHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc--ceEEEEEEcc--cchh
Confidence 55666654 468899999999999999999999999999987 7888899987 4444
No 387
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=91.71 E-value=0.2 Score=37.05 Aligned_cols=35 Identities=9% Similarity=0.265 Sum_probs=26.0
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCc
Q 010469 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 498 (510)
Q Consensus 456 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~ 498 (510)
++.|+.+||++|...+..+.+. ++.+-.+|++.+.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~--------~i~~~~~di~~~~ 35 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK--------GVTFTEIRVDGDP 35 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc--------CCCcEEEEecCCH
Confidence 4578999999999999999853 3555666666553
No 388
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=91.64 E-value=0.43 Score=41.22 Aligned_cols=81 Identities=17% Similarity=0.228 Sum_probs=61.0
Q ss_pred HHHHHhhcCcccccccCCCCCCCCCCceEEEeCcchhhHhhcc--CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCc
Q 010469 409 TFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDE--SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS 486 (510)
Q Consensus 409 ~Fi~~~~~Gkl~~~~kSe~~p~~~~~~~~~l~~~~f~~~v~~~--~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~ 486 (510)
.|++.+...++..+..-.. ...-|.|..+++..|...|-.. +-+|+|..|...-+.|.-+...++.+|.+|..
T Consensus 68 rfLE~YR~kRl~E~r~~~~--k~kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~--- 142 (240)
T KOG3170|consen 68 RFLEMYRIKRLAEWRATAE--KAKFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ--- 142 (240)
T ss_pred HHHHHHHHHHHHHHHHHHH--HhcccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc---
Confidence 4777777766654322111 1126889999999999988543 45899999999999999999999999999986
Q ss_pred EEEEEEeC
Q 010469 487 IVIAKMDG 494 (510)
Q Consensus 487 ~~~~~id~ 494 (510)
+.|+++=.
T Consensus 143 iKFVki~a 150 (240)
T KOG3170|consen 143 IKFVKIPA 150 (240)
T ss_pred ceEEeccc
Confidence 67766643
No 389
>PHA03050 glutaredoxin; Provisional
Probab=91.53 E-value=0.18 Score=39.93 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=20.3
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHH
Q 010469 455 VLLEIYAPWCGHCQAFEPTYNKLA 478 (510)
Q Consensus 455 vlv~f~~~~c~~C~~~~~~~~~~a 478 (510)
-++.|..+|||+|++.+..+.+..
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~ 37 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFS 37 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcC
Confidence 366799999999999999988753
No 390
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=91.46 E-value=0.35 Score=34.92 Aligned_cols=35 Identities=11% Similarity=0.175 Sum_probs=27.4
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCc
Q 010469 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 498 (510)
Q Consensus 456 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~ 498 (510)
++.|..+||+.|.+.+..+.+. ++.+-.+|++.+.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~--------~i~~~~~~v~~~~ 37 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN--------GISYEEIPLGKDI 37 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCCcEEEECCCCh
Confidence 6779999999999998888742 4666777877665
No 391
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=91.35 E-value=0.31 Score=35.24 Aligned_cols=36 Identities=8% Similarity=0.191 Sum_probs=27.7
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcC
Q 010469 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 499 (510)
Q Consensus 456 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~ 499 (510)
+..|..++|+.|+..+..+.+. ++.+-.+|++.++.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~~di~~~~~ 36 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH--------GIAFEEINIDEQPE 36 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC--------CCceEEEECCCCHH
Confidence 3578899999999999988752 56777788876653
No 392
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=91.30 E-value=0.2 Score=32.27 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=14.5
Q ss_pred CchhhHHH--HHHHHHHHhhhhhhhc
Q 010469 1 MSTRYILL--LSLTILLLFSPALAKS 24 (510)
Q Consensus 1 M~k~~~~~--~~~~~~l~~~~c~~~~ 24 (510)
|+||.+.+ +++++++.|+||....
T Consensus 1 MmKk~i~~i~~~l~~~~~l~~CnTv~ 26 (48)
T PRK10081 1 MVKKTIAAIFSVLVLSTVLTACNTTR 26 (48)
T ss_pred ChHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 66665543 3344456799997643
No 393
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=91.24 E-value=0.32 Score=37.63 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=28.0
Q ss_pred CCcEEEEEeC----CCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCc
Q 010469 452 SKDVLLEIYA----PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 498 (510)
Q Consensus 452 ~~~vlv~f~~----~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~ 498 (510)
..+|+|+-.+ |||++|.+.+..+.+. ++.+..+|+..+.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~--------~i~~~~~di~~~~ 53 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC--------GVPFAYVNVLEDP 53 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc--------CCCEEEEECCCCH
Confidence 3567776653 8999999998888763 3556677886553
No 394
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=91.22 E-value=0.68 Score=39.54 Aligned_cols=44 Identities=18% Similarity=0.260 Sum_probs=35.1
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 010469 452 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 495 (510)
Q Consensus 452 ~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~ 495 (510)
.+.+|+.|....|++|..+.+.+.++-+.+-+..++.|...+.-
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~ 55 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVP 55 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESS
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcc
Confidence 46789999999999999999999998888833347888877763
No 395
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=90.99 E-value=0.19 Score=37.10 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=18.0
Q ss_pred CchhhHHHHHHHHHHHhhhhhhh
Q 010469 1 MSTRYILLLSLTILLLFSPALAK 23 (510)
Q Consensus 1 M~k~~~~~~~~~~~l~~~~c~~~ 23 (510)
||+++++...++.+++|+||.+.
T Consensus 1 mk~klll~aviLs~~LLaGCAs~ 23 (85)
T PRK09973 1 MKTIFTVGAVVLATCLLSGCVNE 23 (85)
T ss_pred CchhHHHHHHHHHHHHHHHcCCc
Confidence 88888776666667889999865
No 396
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.72 E-value=0.6 Score=48.48 Aligned_cols=82 Identities=26% Similarity=0.402 Sum_probs=63.5
Q ss_pred cEEeChhcHHHHHhCCCeEEEEEECCCChHHhhhhHH---HHHHHHHHhhcCCCeEEEEEeCcccHHHHHhC--------
Q 010469 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPE---YAAAATELKSANESVVLAKVDATEENELAHEY-------- 163 (510)
Q Consensus 95 v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~---~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~-------- 163 (510)
-..=+.+.|......++|++|-+-.+||..|+-+..+ =.++|+.++. .++-++||.++-|++-+.|
T Consensus 28 W~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~---~FV~IKVDREERPDvD~~Ym~~~q~~t 104 (667)
T COG1331 28 WYPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE---NFVPVKVDREERPDVDSLYMNASQAIT 104 (667)
T ss_pred ccccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh---CceeeeEChhhccCHHHHHHHHHHHhc
Confidence 4455678899998999999999999999999987653 2456767766 7899999998887654443
Q ss_pred CCCcccEEEEEe-CCee
Q 010469 164 DVQGFPTIYFFV-DGQH 179 (510)
Q Consensus 164 ~v~~~P~~~~~~-~g~~ 179 (510)
|-.+.|-+++.- +|++
T Consensus 105 G~GGWPLtVfLTPd~kP 121 (667)
T COG1331 105 GQGGWPLTVFLTPDGKP 121 (667)
T ss_pred cCCCCceeEEECCCCce
Confidence 355899988885 6654
No 397
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=90.71 E-value=0.48 Score=41.30 Aligned_cols=44 Identities=25% Similarity=0.453 Sum_probs=35.2
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 010469 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 496 (510)
Q Consensus 451 ~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~ 496 (510)
.++..|+.|+...|++|+.+.+.+..+.+.+.+ ++.+..+.+..
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~--~v~~~~~~~~~ 57 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK--DVKFEKVPVVF 57 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC--CceEEEcCCcc
Confidence 357889999999999999999999998888754 56665555443
No 398
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=90.37 E-value=1 Score=39.24 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=40.8
Q ss_pred ChhcHHHHHhCCCeEEEEEECCCCh-HHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcc
Q 010469 99 KERNFSDVIENNKFVMVEFYAPWCG-HCQALAPEYAAAATELKSANESVVLAKVDATE 155 (510)
Q Consensus 99 ~~~~~~~~~~~~~~~~v~f~a~wC~-~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~ 155 (510)
+++.+...--.+++++|.|.-+.|+ .|-.....+.++.+++...+.++.++.|..+-
T Consensus 41 ~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP 98 (174)
T PF02630_consen 41 DGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP 98 (174)
T ss_dssp TSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST
T ss_pred CCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC
Confidence 3333333223689999999999995 79999999999999988755567666666553
No 399
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=90.31 E-value=0.62 Score=35.48 Aligned_cols=41 Identities=24% Similarity=0.421 Sum_probs=30.9
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCc
Q 010469 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 498 (510)
Q Consensus 456 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~ 498 (510)
|..|+.+.|++|..+.+.+.++.....+ ++.+....+....
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~ 41 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG--GVRVVYRPFPLLG 41 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC--cEEEEEeccccCC
Confidence 4679999999999999999998855554 5666655554443
No 400
>COG5510 Predicted small secreted protein [Function unknown]
Probab=90.02 E-value=0.34 Score=30.28 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=13.9
Q ss_pred CchhhHH--HHHHHHHHHhhhhhhhc
Q 010469 1 MSTRYIL--LLSLTILLLFSPALAKS 24 (510)
Q Consensus 1 M~k~~~~--~~~~~~~l~~~~c~~~~ 24 (510)
|+|+.++ ++++++.++++||....
T Consensus 1 mmk~t~l~i~~vll~s~llaaCNT~r 26 (44)
T COG5510 1 MMKKTILLIALVLLASTLLAACNTMR 26 (44)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5555333 33334447899997653
No 401
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=89.81 E-value=0.56 Score=35.73 Aligned_cols=38 Identities=21% Similarity=0.380 Sum_probs=27.1
Q ss_pred CCcEEEEEeC----CCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCC
Q 010469 452 SKDVLLEIYA----PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497 (510)
Q Consensus 452 ~~~vlv~f~~----~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n 497 (510)
+++|+|+-.+ |||++|+..+..+.+. ++.+..+|+..+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~--------~i~y~~idv~~~ 48 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL--------GVDFGTFDILED 48 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc--------CCCeEEEEcCCC
Confidence 3567776554 7999999988888764 355666777655
No 402
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=89.46 E-value=0.34 Score=31.92 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=17.9
Q ss_pred CchhhHHHHHHHHHHHhhhhhhhc
Q 010469 1 MSTRYILLLSLTILLLFSPALAKS 24 (510)
Q Consensus 1 M~k~~~~~~~~~~~l~~~~c~~~~ 24 (510)
||+-+..+++++.++.|+||+..+
T Consensus 1 mk~~~~s~~ala~l~sLA~CG~KG 24 (58)
T COG5567 1 MKNVFKSLLALATLFSLAGCGLKG 24 (58)
T ss_pred ChhHHHHHHHHHHHHHHHhcccCC
Confidence 776666666677777999998754
No 403
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=88.96 E-value=0.6 Score=34.63 Aligned_cols=36 Identities=14% Similarity=0.282 Sum_probs=28.0
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcC
Q 010469 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 499 (510)
Q Consensus 456 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~ 499 (510)
++.|..+||++|++.+..+.+ .++.+..+|++.++.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~--------~g~~~~~i~~~~~~~ 38 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR--------KGVDYEEIDVDDDEP 38 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH--------cCCCcEEEEecCCcH
Confidence 567899999999998888872 257777778777763
No 404
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=88.53 E-value=0.21 Score=38.90 Aligned_cols=61 Identities=15% Similarity=0.145 Sum_probs=41.9
Q ss_pred CcchhhHhhcc-CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccce
Q 010469 441 GNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 503 (510)
Q Consensus 441 ~~~f~~~v~~~-~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~ 503 (510)
.+.|++.+..+ .++++++=+++.|+-+......|+.......+ .+.++.+|+-.....+-+
T Consensus 7 ~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~--~~~~y~l~v~~~R~vSn~ 68 (105)
T PF11009_consen 7 EEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD--EIPVYYLDVIEYRPVSNA 68 (105)
T ss_dssp HHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGGHHHHHH
T ss_pred HHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc--cceEEEEEEEeCchhHHH
Confidence 35677776654 56888888999999999999999998887765 488999998766554443
No 405
>PRK10638 glutaredoxin 3; Provisional
Probab=88.39 E-value=0.66 Score=34.65 Aligned_cols=35 Identities=9% Similarity=0.141 Sum_probs=26.9
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCc
Q 010469 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 498 (510)
Q Consensus 456 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~ 498 (510)
++.|..+||++|++.+..+.+. ++.+..+|++.++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~--------gi~y~~~dv~~~~ 38 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK--------GVSFQEIPIDGDA 38 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCCCH
Confidence 5678899999999999888852 3566677877664
No 406
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=88.27 E-value=0.2 Score=31.21 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=14.9
Q ss_pred CchhhHHHHHHHHHHHhhhhhhh
Q 010469 1 MSTRYILLLSLTILLLFSPALAK 23 (510)
Q Consensus 1 M~k~~~~~~~~~~~l~~~~c~~~ 23 (510)
|||.+++.++++. ++|+||...
T Consensus 1 MkKi~~~~i~~~~-~~L~aCQaN 22 (46)
T PF02402_consen 1 MKKIIFIGIFLLT-MLLAACQAN 22 (46)
T ss_pred CcEEEEeHHHHHH-HHHHHhhhc
Confidence 8877665555444 788999644
No 407
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=87.13 E-value=7.7 Score=29.72 Aligned_cols=73 Identities=12% Similarity=0.075 Sum_probs=50.9
Q ss_pred CCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCC--eeeeecCCCC
Q 010469 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG--QHKAYNGGRT 187 (510)
Q Consensus 110 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g--~~~~y~g~~~ 187 (510)
+.+.++.|..+. ..|......++++++.- + ++.+-..+... ..|++.+.++| ..++|.|-..
T Consensus 19 ~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS-d---kI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~ 82 (94)
T cd02974 19 NPVELVASLDDS-EKSAELLELLEEIASLS-D---KITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPM 82 (94)
T ss_pred CCEEEEEEeCCC-cchHHHHHHHHHHHHhC-C---ceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCC
Confidence 445566676655 88988888888887543 3 46554433211 36999998877 3489999888
Q ss_pred HHHHHHHHHHH
Q 010469 188 KDAIVTWIKKK 198 (510)
Q Consensus 188 ~~~l~~~i~~~ 198 (510)
-.++.+||...
T Consensus 83 GhEf~Slilai 93 (94)
T cd02974 83 GHEFTSLVLAL 93 (94)
T ss_pred chhHHHHHHHh
Confidence 88888888653
No 408
>PRK10824 glutaredoxin-4; Provisional
Probab=86.91 E-value=0.82 Score=36.51 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=26.1
Q ss_pred CCcEEEEEeC----CCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCC
Q 010469 452 SKDVLLEIYA----PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497 (510)
Q Consensus 452 ~~~vlv~f~~----~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n 497 (510)
..+|+|+-.+ |||++|++....+..+. +.+..+|+..+
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~--------i~~~~idi~~d 55 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACG--------ERFAYVDILQN 55 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcC--------CCceEEEecCC
Confidence 4567776655 79999999998887652 33444566554
No 409
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=86.83 E-value=2.2 Score=35.83 Aligned_cols=51 Identities=10% Similarity=0.240 Sum_probs=35.4
Q ss_pred EEEEECC------CChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHH----HhCCC----CcccEEEE
Q 010469 114 MVEFYAP------WCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELA----HEYDV----QGFPTIYF 173 (510)
Q Consensus 114 ~v~f~a~------wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~----~~~~v----~~~P~~~~ 173 (510)
+|.|+++ +|++|++....|+.. +|.+-.+|.+.++++. +.++. ..+|.+++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~---------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF---------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC---------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 4566677 899999998888753 4777788887765433 33443 57888754
No 410
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=86.56 E-value=1.2 Score=37.84 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=29.9
Q ss_pred cEEEEEeCCCChhhhhh-hHHHHHHHHHhcCCCcE-EEEEEeCC
Q 010469 454 DVLLEIYAPWCGHCQAF-EPTYNKLAKHLRGVDSI-VIAKMDGT 495 (510)
Q Consensus 454 ~vlv~f~~~~c~~C~~~-~~~~~~~a~~~~~~~~~-~~~~id~~ 495 (510)
.||++|.+.||+.|... .+.|.+....+.. .++ .++-+..+
T Consensus 32 vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~-~g~~~V~~iS~D 74 (155)
T cd03013 32 VVIFGVPGAFTPTCSAQHLPGYVENADELKA-KGVDEVICVSVN 74 (155)
T ss_pred EEEEEeCCCCCCCCchhHHHHHHHhHHHHHH-CCCCEEEEEECC
Confidence 45555569999999998 9999999998865 244 35555544
No 411
>PRK15396 murein lipoprotein; Provisional
Probab=86.47 E-value=0.59 Score=34.09 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=14.4
Q ss_pred CchhhHHHHHH-HHHHHhhhhhhh
Q 010469 1 MSTRYILLLSL-TILLLFSPALAK 23 (510)
Q Consensus 1 M~k~~~~~~~~-~~~l~~~~c~~~ 23 (510)
|+|+.+++..+ +.+++|+||.+.
T Consensus 1 m~~~kl~l~av~ls~~LLaGCAs~ 24 (78)
T PRK15396 1 MNRTKLVLGAVILGSTLLAGCSSN 24 (78)
T ss_pred CchhHHHHHHHHHHHHHHHHcCCc
Confidence 77654444443 335789999865
No 412
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=85.64 E-value=0.97 Score=33.09 Aligned_cols=33 Identities=21% Similarity=0.445 Sum_probs=25.4
Q ss_pred EeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 010469 459 IYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 495 (510)
Q Consensus 459 f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~ 495 (510)
+++++|+.|..+...+.+++..++ +.+-.+|..
T Consensus 5 v~~~~C~~C~~~~~~~~~~~~~~~----i~~ei~~~~ 37 (76)
T PF13192_consen 5 VFSPGCPYCPELVQLLKEAAEELG----IEVEIIDIE 37 (76)
T ss_dssp EECSSCTTHHHHHHHHHHHHHHTT----EEEEEEETT
T ss_pred EeCCCCCCcHHHHHHHHHHHHhcC----CeEEEEEcc
Confidence 378889999999999999988773 444555653
No 413
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=85.42 E-value=5.4 Score=36.78 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=26.8
Q ss_pred HHHHhCCCCcccEEEEEeCCeeeeecCCCCHHHHHHHHHHH
Q 010469 158 ELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKKK 198 (510)
Q Consensus 158 ~~~~~~~v~~~P~~~~~~~g~~~~y~g~~~~~~l~~~i~~~ 198 (510)
.++.++||.+.|++++-.. .+.|..+.+.+.+.|...
T Consensus 206 ~~a~~~gv~gTPt~~v~~~----~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 206 KLAQQLGVNGTPTFIVNGK----LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHhcCCCcCCeEEECCe----eecCCCCHHHHHHHHHHh
Confidence 4556788999999866432 777888888888777654
No 414
>PRK13792 lysozyme inhibitor; Provisional
Probab=85.17 E-value=0.55 Score=37.94 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=16.3
Q ss_pred CchhhHHHHHHHHHHHhhhhhhhcc
Q 010469 1 MSTRYILLLSLTILLLFSPALAKSQ 25 (510)
Q Consensus 1 M~k~~~~~~~~~~~l~~~~c~~~~~ 25 (510)
|||. ++++++.+.++|+||++...
T Consensus 1 mk~~-l~~ll~~~~~lLsaCs~~~~ 24 (127)
T PRK13792 1 MKKA-LWLLLAAVPVVLVACGGSDD 24 (127)
T ss_pred ChhH-HHHHHHHHHhheecccCCCC
Confidence 8866 44455555678999987644
No 415
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=85.13 E-value=6 Score=36.02 Aligned_cols=92 Identities=20% Similarity=0.351 Sum_probs=62.6
Q ss_pred CCCeEEEEEECCCCh-HHhhhhHHHHHHHHHHhhcCCC---eEEEEEeCccc--------------------------HH
Q 010469 109 NNKFVMVEFYAPWCG-HCQALAPEYAAAATELKSANES---VVLAKVDATEE--------------------------NE 158 (510)
Q Consensus 109 ~~~~~~v~f~a~wC~-~C~~~~p~~~~~~~~~~~~~~~---v~~~~vd~~~~--------------------------~~ 158 (510)
.+++++++|--+.|| -|-.+...+.++.++++..... -.|+.||=..+ +.
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~ 217 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQ 217 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHH
Confidence 588999999999999 5888888888888888764212 25777774322 15
Q ss_pred HHHhCCCCccc-------------E--EEEEe-CCeeeeecCC-CCHHHHHHHHHHHcC
Q 010469 159 LAHEYDVQGFP-------------T--IYFFV-DGQHKAYNGG-RTKDAIVTWIKKKIG 200 (510)
Q Consensus 159 ~~~~~~v~~~P-------------~--~~~~~-~g~~~~y~g~-~~~~~l~~~i~~~~~ 200 (510)
+|++|.|.--+ + ++++. +|+.+.|.|. ++.+++.+-|.+.+.
T Consensus 218 vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~ 276 (280)
T KOG2792|consen 218 VAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVA 276 (280)
T ss_pred HHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHH
Confidence 67777665222 2 33344 6677888775 677888777766553
No 416
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=84.93 E-value=0.52 Score=35.05 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=33.2
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCccce
Q 010469 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 503 (510)
Q Consensus 456 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~~~ 503 (510)
|++|..+.|.-|..+...+..+.... .+.+-.+|++.|+....+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~----~~~l~~vDI~~d~~l~~~ 45 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF----PFELEEVDIDEDPELFEK 45 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS----TCEEEEEETTTTHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc----CceEEEEECCCCHHHHHH
Confidence 67899999999999999888754332 488899999977654444
No 417
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=84.48 E-value=3.1 Score=33.20 Aligned_cols=52 Identities=19% Similarity=0.322 Sum_probs=41.7
Q ss_pred cchhhHhhc-cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 010469 442 NNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 495 (510)
Q Consensus 442 ~~f~~~v~~-~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~ 495 (510)
..-++.+.. ..+.|++-|--.|-+.|..|...+..++..+.+ -..++-+|++
T Consensus 12 ~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn--fa~Iylvdid 64 (142)
T KOG3414|consen 12 WEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN--FAVIYLVDID 64 (142)
T ss_pred HHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhh--ceEEEEEecc
Confidence 344555544 357899999999999999999999999999987 5666667766
No 418
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=84.46 E-value=1.4 Score=39.69 Aligned_cols=42 Identities=26% Similarity=0.567 Sum_probs=32.7
Q ss_pred CCcEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCCcEEEEEEeCC
Q 010469 452 SKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGT 495 (510)
Q Consensus 452 ~~~vlv~f~~~~c~~C~~~~~~~---~~~a~~~~~~~~~~~~~id~~ 495 (510)
+++.||.|+.-.|++|..+.+.+ ..+.+.+.+ ++.|.++.+.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~--~v~~~~~~~~ 81 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE--GTKMTKYHVE 81 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC--CCeEEEeccc
Confidence 45679999999999999999876 777777765 5666665553
No 419
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=83.28 E-value=7.2 Score=28.05 Aligned_cols=64 Identities=17% Similarity=0.188 Sum_probs=51.7
Q ss_pred eEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCC
Q 010469 112 FVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG 177 (510)
Q Consensus 112 ~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g 177 (510)
+.+..|-+..-+.+++....+.++.+.+.+ ..+.+=.||..+++.+++.++|-..||++=...+
T Consensus 2 ~~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~--~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~~P~ 65 (72)
T cd02978 2 YVLRLYVAGRTPKSERALQNLKRILEELLG--GPYELEVIDVLKQPQLAEEDKIVATPTLVKVLPP 65 (72)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHHHHhcC--CcEEEEEEEcccCHhHHhhCCEEEechhhhcCCC
Confidence 345666677778888888899998888764 3788889999999999999999999997654433
No 420
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=83.25 E-value=24 Score=33.26 Aligned_cols=117 Identities=15% Similarity=0.212 Sum_probs=73.1
Q ss_pred HHHHHHHhcCCCceeecCCCchhhhccCCcc-ce-EEEEEec------cchhhHHHHHHHHHHhcc------C--ceEEE
Q 010469 295 TIADFVFSNKLPLVTIFTRENAPSVFESPIK-NQ-LLLFAVS------NDSEKLLPVFEEAAKSFK------G--KLIFV 358 (510)
Q Consensus 295 ~i~~fi~~~~~p~~~~lt~~~~~~~~~~~~~-~~-~v~~~~~------~~~~~~~~~~~~~A~~~~------~--~~~f~ 358 (510)
++.+-..-.+...+..++.+++..+...+-+ .. +++|.-. .-|.+..+.+.-+|..++ + |+-|+
T Consensus 29 kv~~L~~~ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~ 108 (331)
T KOG2603|consen 29 KVVQLMSWTSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFC 108 (331)
T ss_pred HHHHHHhccCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEE
Confidence 3444433344455666777777776654422 22 2333322 226666788888888765 2 68999
Q ss_pred EEEcCCcccccchhhhcCCCCCCCcEEEEeeCCCCCccc---C---CCCCCHHHHHHHHHHhhc
Q 010469 359 YVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHI---L---DGELTLDKIKTFGEDFLE 416 (510)
Q Consensus 359 ~vd~~~~~~~~~l~~~~gi~~~~~P~~~i~~~~~~~~y~---~---~~~~t~e~i~~Fi~~~~~ 416 (510)
.||.++ .+.+-+.+++... |.+.++.+..+++-. + +--...|.+.+|+++..+
T Consensus 109 ~Vd~~e---~p~~Fq~l~ln~~--P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tk 167 (331)
T KOG2603|consen 109 MVDYDE---SPQVFQQLNLNNV--PHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTK 167 (331)
T ss_pred EEeccc---cHHHHHHhcccCC--CeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhh
Confidence 999877 5577789998654 999998766543221 1 112348899999998665
No 421
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=83.18 E-value=2.3 Score=33.29 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=25.9
Q ss_pred CcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 010469 453 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 495 (510)
Q Consensus 453 ~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~ 495 (510)
++|+ .|..+||+.|++++..|.+ +.. ...++.+|-.
T Consensus 14 ~~VV-ifSKs~C~~c~~~k~ll~~----~~v--~~~vvELD~~ 49 (104)
T KOG1752|consen 14 NPVV-IFSKSSCPYCHRAKELLSD----LGV--NPKVVELDED 49 (104)
T ss_pred CCEE-EEECCcCchHHHHHHHHHh----CCC--CCEEEEccCC
Confidence 3454 5889999999998888876 332 5666777755
No 422
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=83.09 E-value=2 Score=38.17 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=22.8
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHH
Q 010469 452 SKDVLLEIYAPWCGHCQAFEPTYNK 476 (510)
Q Consensus 452 ~~~vlv~f~~~~c~~C~~~~~~~~~ 476 (510)
++..++.|..+.|++|+++.+.+.+
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh
Confidence 5789999999999999999999876
No 423
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.07 E-value=3.8 Score=34.14 Aligned_cols=45 Identities=18% Similarity=0.295 Sum_probs=35.4
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHH---HHHHhcCCCcEEEEEEeCCCC
Q 010469 451 ESKDVLLEIYAPWCGHCQAFEPTYNK---LAKHLRGVDSIVIAKMDGTTN 497 (510)
Q Consensus 451 ~~~~vlv~f~~~~c~~C~~~~~~~~~---~a~~~~~~~~~~~~~id~~~n 497 (510)
.++-.+++|-++.|+.|..+...+.. +-+.+.+ ++.++++|++..
T Consensus 41 ~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~--hf~~~~l~i~~s 88 (182)
T COG2143 41 NDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE--HFSAYYLNISYS 88 (182)
T ss_pred cCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh--CeEEEEEEeccC
Confidence 35779999999999999999998844 4445554 799999998643
No 424
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=81.79 E-value=7.1 Score=29.23 Aligned_cols=76 Identities=13% Similarity=0.095 Sum_probs=60.2
Q ss_pred CeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCCeeeeecCCCCH
Q 010469 111 KFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTK 188 (510)
Q Consensus 111 ~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~y~g~~~~ 188 (510)
.+++=.|.|..-+.+++....+.++.+.+.. ..+.+=.||..+++.+++.++|-..||++=...+-..+..|..+.
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~--g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~P~rriiGdls~ 78 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQ--GVYALKVIDVLKNPQLAEEDKILATPTLSKILPPPVRKIIGDLSD 78 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcC--CceEEEEEEcccCHhHHhHCCEEEecHHhhcCCCCcceeeccccc
Confidence 4566678888889999999999998887654 248888899999999999999999999776655544566676543
No 425
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=81.26 E-value=28 Score=29.17 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=52.4
Q ss_pred CcEEeChhcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCccc-----------HHHHH-
Q 010469 94 DVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE-----------NELAH- 161 (510)
Q Consensus 94 ~v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-----------~~~~~- 161 (510)
.+..++++.+.-.--.+++++|-=.|+-|+.--+ ...|+.++++|++. ++.+..+-|..- ..+|+
T Consensus 9 ~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~~--Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~ 85 (162)
T COG0386 9 SVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKDK--GFEVLGFPCNQFGGQEPGSDEEIAKFCQL 85 (162)
T ss_pred eeeccCCCCccHHHhCCcEEEEEEcccccCCcHh-HHHHHHHHHHHhhC--CcEEEeccccccccCCCCCHHHHHHHHHh
Confidence 3455556555544457889988889999998663 46788889999884 588888877642 24554
Q ss_pred hCCCCcccEEEEE
Q 010469 162 EYDVQGFPTIYFF 174 (510)
Q Consensus 162 ~~~v~~~P~~~~~ 174 (510)
.|||+ +|.+--+
T Consensus 86 ~YgVt-Fp~f~Ki 97 (162)
T COG0386 86 NYGVT-FPMFSKI 97 (162)
T ss_pred ccCce-eeeeeEE
Confidence 45664 5555444
No 426
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=81.07 E-value=8.6 Score=27.37 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=33.7
Q ss_pred EEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCccc-HHHHHhCCCCcccEEE
Q 010469 115 VEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE-NELAHEYDVQGFPTIY 172 (510)
Q Consensus 115 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-~~~~~~~~v~~~P~~~ 172 (510)
+.|+.+||+.|++..-.+.+. + ..+....+|.... +++.+......+|++.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~-----g--l~~e~~~v~~~~~~~~~~~~np~~~vP~L~ 53 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA-----G--ITVELREVELKNKPAEMLAASPKGTVPVLV 53 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc-----C--CCcEEEEeCCCCCCHHHHHHCCCCCCCEEE
Confidence 457889999999886666543 2 3466666765432 4555555667899984
No 427
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=80.99 E-value=16 Score=26.51 Aligned_cols=71 Identities=8% Similarity=0.050 Sum_probs=40.0
Q ss_pred EEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCccc----HHHHHhCCCCcccEEEEEeCCeeeeecCCCCHH
Q 010469 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE----NELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKD 189 (510)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~----~~~~~~~~v~~~P~~~~~~~g~~~~y~g~~~~~ 189 (510)
+..++.++|+.|++.+-.+.+. ++.+-.++.... +++.+.-+-..+|++..-.+|.. . ....
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~---------gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~-l----~es~ 67 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL---------ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQ-M----FESA 67 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc---------CCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeE-E----EcHH
Confidence 3467778999999887766653 233333444332 23333335568998743223322 1 2457
Q ss_pred HHHHHHHHH
Q 010469 190 AIVTWIKKK 198 (510)
Q Consensus 190 ~l~~~i~~~ 198 (510)
.|..|+.+.
T Consensus 68 ~I~~yL~~~ 76 (77)
T cd03041 68 DIVKYLFKT 76 (77)
T ss_pred HHHHHHHHh
Confidence 777777653
No 428
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=80.95 E-value=1.9 Score=33.83 Aligned_cols=37 Identities=11% Similarity=0.021 Sum_probs=26.9
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCc
Q 010469 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH 500 (510)
Q Consensus 456 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~ 500 (510)
+..|+.++|+.|++....+.+. ++.|-.+|+..+...
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~ 37 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEH--------GIEYEFIDYLKEPPT 37 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHc--------CCCcEEEeeccCCCC
Confidence 3579999999999998888762 456666777655443
No 429
>PRK09301 circadian clock protein KaiB; Provisional
Probab=80.87 E-value=7.4 Score=30.09 Aligned_cols=77 Identities=12% Similarity=0.094 Sum_probs=62.2
Q ss_pred CCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCCeeeeecCCCCH
Q 010469 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTK 188 (510)
Q Consensus 110 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~y~g~~~~ 188 (510)
+.+++=.|.|..-+..++....+.++-+.+.. ..+.+=.||..+++.+++.++|-..||++=...+-..+..|..+.
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~--g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~P~rriiGDlsd 81 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFK--GVYALKVIDVLKNPQLAEEDKILATPTLAKILPPPVRKIIGDLSD 81 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcC--CceEEEEEEcccCHhHHhHCCeEEecHHhhcCCCCcceeeccccc
Confidence 45778888899999999999999999887655 248888899999999999999999999776655544567777653
No 430
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=80.85 E-value=1.5 Score=33.59 Aligned_cols=9 Identities=56% Similarity=0.718 Sum_probs=3.8
Q ss_pred HHHHHHhhh
Q 010469 11 LTILLLFSP 19 (510)
Q Consensus 11 ~~~~l~~~~ 19 (510)
|+++|++|+
T Consensus 13 LA~lLlisS 21 (95)
T PF07172_consen 13 LAALLLISS 21 (95)
T ss_pred HHHHHHHHh
Confidence 334444443
No 431
>PF13627 LPAM_2: Prokaryotic lipoprotein-attachment site
Probab=80.09 E-value=1.5 Score=23.87 Aligned_cols=16 Identities=31% Similarity=0.272 Sum_probs=10.6
Q ss_pred HHHHHHHHhhhhhhhc
Q 010469 9 LSLTILLLFSPALAKS 24 (510)
Q Consensus 9 ~~~~~~l~~~~c~~~~ 24 (510)
+++++++.++||+..+
T Consensus 4 ~~~~~~~~LsgCG~KG 19 (24)
T PF13627_consen 4 LLLALALALSGCGQKG 19 (24)
T ss_pred HHHHHHHHHHhcccCC
Confidence 3444567789998664
No 432
>PRK11616 hypothetical protein; Provisional
Probab=80.07 E-value=1.4 Score=34.12 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=17.2
Q ss_pred CchhhHHHHHHHHHHHhhhhhhhc
Q 010469 1 MSTRYILLLSLTILLLFSPALAKS 24 (510)
Q Consensus 1 M~k~~~~~~~~~~~l~~~~c~~~~ 24 (510)
||+.++.++..+++++|+||++--
T Consensus 1 ~~~~~~~~~~~~~~llLsGCgSim 24 (109)
T PRK11616 1 IRNVLLAFMICSGMLLLSGCSSVM 24 (109)
T ss_pred CcchhHHHHHHHHHHHhcccHhhH
Confidence 566666666666678999998763
No 433
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=79.98 E-value=6 Score=35.82 Aligned_cols=61 Identities=15% Similarity=0.243 Sum_probs=47.0
Q ss_pred CCceEEEeCcchhhHh--hccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEe
Q 010469 433 DGDVKIVVGNNFDEIV--LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 493 (510)
Q Consensus 433 ~~~~~~l~~~~f~~~v--~~~~~~vlv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id 493 (510)
+..+..+++.+..... ...++|+||.|-+-.||+-+.-.+.|+++++.+.+..++.++.|.
T Consensus 81 ns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~ 143 (237)
T PF00837_consen 81 NSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIE 143 (237)
T ss_pred CCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHh
Confidence 5678888888733322 245789999999999999999999999999999875455555443
No 434
>PRK13733 conjugal transfer protein TraV; Provisional
Probab=78.95 E-value=1.4 Score=37.27 Aligned_cols=22 Identities=32% Similarity=0.285 Sum_probs=14.3
Q ss_pred CchhhHHHHHHHHHHHhhhhhhh
Q 010469 1 MSTRYILLLSLTILLLFSPALAK 23 (510)
Q Consensus 1 M~k~~~~~~~~~~~l~~~~c~~~ 23 (510)
||+.+ +++.|+.+|+|+||...
T Consensus 1 MK~~~-~li~l~~~LlL~GCAg~ 22 (171)
T PRK13733 1 MKQIS-LLIPLLGTLLLSGCAGT 22 (171)
T ss_pred Cchhh-HHHHHHHHHHhccccCC
Confidence 77544 34445566789999753
No 435
>PRK11548 outer membrane biogenesis protein BamE; Provisional
Probab=78.60 E-value=1.6 Score=34.88 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=16.0
Q ss_pred CchhhHHHHHHHHHHHhhhhhh
Q 010469 1 MSTRYILLLSLTILLLFSPALA 22 (510)
Q Consensus 1 M~k~~~~~~~~~~~l~~~~c~~ 22 (510)
|+.+.+.+++++++++|+||+.
T Consensus 1 m~~~~~~~~~~~~~~~LsgCs~ 22 (113)
T PRK11548 1 MRCKTLTAAAAVLLMLTAGCST 22 (113)
T ss_pred CcchHHHHHHHHHHHHHcccCC
Confidence 7766665666666788999974
No 436
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=76.91 E-value=26 Score=30.63 Aligned_cols=88 Identities=24% Similarity=0.329 Sum_probs=55.8
Q ss_pred CeEEEEEE-CCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCc--------------------------ccHHHHHhC
Q 010469 111 KFVMVEFY-APWCGHCQALAPEYAAAATELKSANESVVLAKVDAT--------------------------EENELAHEY 163 (510)
Q Consensus 111 ~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~--------------------------~~~~~~~~~ 163 (510)
+++++.|| +..-+-|-.+...|.+.+.+++..+..+..+.+|.. ...++|+.|
T Consensus 34 kw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~y 113 (194)
T COG0450 34 KWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAY 113 (194)
T ss_pred cEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHHc
Confidence 67666666 456778888999999999999986544444444422 123788888
Q ss_pred CCCc------ccEEEEEe-CCee--e-eec--CCCCHHHHHHHHHHH
Q 010469 164 DVQG------FPTIYFFV-DGQH--K-AYN--GGRTKDAIVTWIKKK 198 (510)
Q Consensus 164 ~v~~------~P~~~~~~-~g~~--~-~y~--g~~~~~~l~~~i~~~ 198 (510)
|+-. +=.+++++ +|.. . .|. -.++.+++.+-+...
T Consensus 114 gvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAl 160 (194)
T COG0450 114 GVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDAL 160 (194)
T ss_pred CCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 8752 22456665 5622 1 222 256777777766543
No 437
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=76.28 E-value=26 Score=25.21 Aligned_cols=74 Identities=15% Similarity=0.214 Sum_probs=42.7
Q ss_pred EEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEe--CCeeeeecCCCCHHHH
Q 010469 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFV--DGQHKAYNGGRTKDAI 191 (510)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~--~g~~~~y~g~~~~~~l 191 (510)
+..|+.+.|+.|++.+-.+.+. + ..+....+|....+++ +.-+...+|++..=. +|.. -.+...|
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~-----g--i~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~-----l~eS~~I 68 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH-----G--IPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQ-----LVDSSVI 68 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC-----C--CceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccE-----EEcHHHH
Confidence 4567889999999998666543 2 2233334443222333 234556799886432 1321 1256778
Q ss_pred HHHHHHHcC
Q 010469 192 VTWIKKKIG 200 (510)
Q Consensus 192 ~~~i~~~~~ 200 (510)
.+|+.+.++
T Consensus 69 ~~yL~~~~~ 77 (77)
T cd03040 69 ISTLKTYLG 77 (77)
T ss_pred HHHHHHHcC
Confidence 888877653
No 438
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=76.12 E-value=2.9 Score=32.81 Aligned_cols=32 Identities=9% Similarity=0.122 Sum_probs=23.3
Q ss_pred EEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcc
Q 010469 115 VEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE 155 (510)
Q Consensus 115 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~ 155 (510)
..|+.++|+.|++....|++. ++.+-.+|..+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~---------~i~~~~idi~~ 33 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH---------GIEYEFIDYLK 33 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc---------CCCcEEEeecc
Confidence 568899999999998777652 35555666554
No 439
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=75.97 E-value=3.3 Score=37.93 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=24.1
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHH
Q 010469 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLA 478 (510)
Q Consensus 451 ~~~~vlv~f~~~~c~~C~~~~~~~~~~a 478 (510)
.++.+|+.|.-+.|++|+++.+.+.++.
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~ 133 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYN 133 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHh
Confidence 3567899999999999999999988764
No 440
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=75.19 E-value=6.5 Score=35.36 Aligned_cols=47 Identities=13% Similarity=0.207 Sum_probs=40.6
Q ss_pred CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCC-CeEEEEEeCcc
Q 010469 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANE-SVVLAKVDATE 155 (510)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~-~v~~~~vd~~~ 155 (510)
.|.++||-+-..+|..|...+..++.|..++...+. +|.|+.||-..
T Consensus 25 ~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~ 72 (238)
T PF04592_consen 25 LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQG 72 (238)
T ss_pred CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCC
Confidence 568999999999999999999999999999987654 69999998543
No 441
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=74.58 E-value=4.8 Score=31.98 Aligned_cols=36 Identities=11% Similarity=0.139 Sum_probs=27.2
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCc
Q 010469 457 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH 500 (510)
Q Consensus 457 v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~ 500 (510)
..|+.++|+.|++.+..+.+- ++.|-.+|+..+...
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~ 37 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH--------GVDYTAIDIVEEPPS 37 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc--------CCceEEecccCCccc
Confidence 468999999999988888752 466777777666544
No 442
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=74.56 E-value=29 Score=24.93 Aligned_cols=73 Identities=18% Similarity=0.181 Sum_probs=50.1
Q ss_pred EEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCccc-HHHHHhCCCCcccEEEEEeCCeeeeecCCCCHHHHHHH
Q 010469 116 EFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE-NELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTW 194 (510)
Q Consensus 116 ~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-~~~~~~~~v~~~P~~~~~~~g~~~~y~g~~~~~~l~~~ 194 (510)
+++.++|+.|++..-.+.. ++ ..+.+..++..+. ..+.+...-..+|++. .+|.... +...|.+|
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~-----~~--i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l~-----dS~~I~~y 66 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEE-----KG--IPYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVLT-----DSAAIIEY 66 (75)
T ss_dssp EEEETTSHHHHHHHHHHHH-----HT--EEEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEEE-----SHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHH-----cC--CeEEEeccCcccchhHHHhhcccccceEEE--ECCEEEe-----CHHHHHHH
Confidence 3678999999998766543 33 2466667776553 4566666777899997 5565332 67889999
Q ss_pred HHHHcCCC
Q 010469 195 IKKKIGPG 202 (510)
Q Consensus 195 i~~~~~~~ 202 (510)
+.+..+.+
T Consensus 67 L~~~~~~~ 74 (75)
T PF13417_consen 67 LEERYPGP 74 (75)
T ss_dssp HHHHSTSS
T ss_pred HHHHcCCC
Confidence 98877543
No 443
>PF11839 DUF3359: Protein of unknown function (DUF3359); InterPro: IPR021793 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=73.90 E-value=2.7 Score=31.94 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=14.6
Q ss_pred CchhhHHHHHHHHHHHhhhhhhhc
Q 010469 1 MSTRYILLLSLTILLLFSPALAKS 24 (510)
Q Consensus 1 M~k~~~~~~~~~~~l~~~~c~~~~ 24 (510)
|+|.++..+. +.++|++||.+.+
T Consensus 1 M~k~l~sal~-~~~~L~~GCAsts 23 (96)
T PF11839_consen 1 MKKLLLSALA-LAALLLAGCASTS 23 (96)
T ss_pred CchHHHHHHH-HHHHHHhHccCCc
Confidence 6666644333 3468889998653
No 444
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=73.68 E-value=3.1 Score=32.72 Aligned_cols=36 Identities=6% Similarity=-0.065 Sum_probs=25.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcC
Q 010469 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 499 (510)
Q Consensus 456 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~ 499 (510)
+..|+.|+|+.|++.+..+.+- ++.|-.+|+..+..
T Consensus 1 i~iy~~~~C~~crka~~~L~~~--------~i~~~~~di~~~p~ 36 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR--------GVAYTFHDYRKDGL 36 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc--------CCCeEEEecccCCC
Confidence 3578999999999988888752 35555566655544
No 445
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=73.31 E-value=7.6 Score=32.87 Aligned_cols=43 Identities=16% Similarity=0.274 Sum_probs=34.4
Q ss_pred CCcEEEEEe-CCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 010469 452 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 495 (510)
Q Consensus 452 ~~~vlv~f~-~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~ 495 (510)
+++|||+|| ..|++.|....-.|++....++. .+..++-|..+
T Consensus 30 Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~-~~a~V~GIS~D 73 (157)
T COG1225 30 GKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEK-LGAVVLGISPD 73 (157)
T ss_pred CCcEEEEECCCCCCCcchHHHHHHHHHHHHHHh-CCCEEEEEeCC
Confidence 568888888 78999999999999999988876 35666666654
No 446
>COG3017 LolB Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]
Probab=72.34 E-value=3.6 Score=36.03 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=16.7
Q ss_pred CchhhHHHHHHHHHHHhhhhhhhc
Q 010469 1 MSTRYILLLSLTILLLFSPALAKS 24 (510)
Q Consensus 1 M~k~~~~~~~~~~~l~~~~c~~~~ 24 (510)
|+|+...+++.++.++|+||+...
T Consensus 3 ~~~~~~~~l~~~As~LL~aC~~~~ 26 (206)
T COG3017 3 MMKRLLFLLLALASLLLTACTLTA 26 (206)
T ss_pred hHHHHHHHHHHHHHHHHHhccCcC
Confidence 556666666666678899997553
No 447
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=71.87 E-value=3.3 Score=37.50 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=16.3
Q ss_pred CchhhHHHHHHHHHHHhhhhhhhcc
Q 010469 1 MSTRYILLLSLTILLLFSPALAKSQ 25 (510)
Q Consensus 1 M~k~~~~~~~~~~~l~~~~c~~~~~ 25 (510)
|++..+.+.+++++|+.+||++.+.
T Consensus 3 ~~~~~~i~~lll~lllva~C~~s~~ 27 (310)
T COG4594 3 MKKTAIILTLLLLLLLVAACSSSDN 27 (310)
T ss_pred chhhHHHHHHHHHHHHHHHhcCcCc
Confidence 4444455555666678899987744
No 448
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=71.58 E-value=5.6 Score=31.91 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=26.2
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcC
Q 010469 457 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 499 (510)
Q Consensus 457 v~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~ 499 (510)
..|+.++|+.|++....+.+. ++.+-.+|+..+..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~ 36 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN--------GIEYQFIDIGEDGP 36 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc--------CCceEEEecCCChh
Confidence 468999999999998888761 46666677765544
No 449
>PF12262 Lipase_bact_N: Bacterial virulence factor lipase N-terminal
Probab=71.45 E-value=3.1 Score=38.75 Aligned_cols=24 Identities=21% Similarity=0.137 Sum_probs=16.8
Q ss_pred CchhhHHHHHHHHHHHhhhhhhhcc
Q 010469 1 MSTRYILLLSLTILLLFSPALAKSQ 25 (510)
Q Consensus 1 M~k~~~~~~~~~~~l~~~~c~~~~~ 25 (510)
|||. +++++++..|+|+||+....
T Consensus 1 Mkk~-~l~~~l~sal~L~GCg~~s~ 24 (268)
T PF12262_consen 1 MKKL-LLSSALASALGLAGCGGDSE 24 (268)
T ss_pred CchH-HHHHHHHHHHHeeecCCCcc
Confidence 6666 45566666789999986533
No 450
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=71.32 E-value=23 Score=33.32 Aligned_cols=152 Identities=11% Similarity=0.036 Sum_probs=80.6
Q ss_pred cccHHHHHhCCCCcccEEEEEeCCeeeeecCCCCHHHHHHHHHHHcCCCcccccchhHHHHhc----cCCCeEEEEEecC
Q 010469 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKKKIGPGIYNITTLDEAERVL----TSETKVVLGYLNS 229 (510)
Q Consensus 154 ~~~~~~~~~~~v~~~P~~~~~~~g~~~~y~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~----~~~~~~~v~~~~~ 229 (510)
+-.++++++++|.-+|-.+.+. |+.+.-.-..+.+.+.+.+.+.-..+-....+..++.+.. .+.+.+++.-+.+
T Consensus 10 dl~~~~~~~~~I~vvPl~I~~~-~~~y~D~~~i~~~~~y~~~~~~~~~p~TS~ps~~~~~~~~~~l~~~~~~vi~i~iSs 88 (275)
T TIGR00762 10 DLPPELIEEYGITVVPLTVIID-GKTYRDGVDITPEEFYEKLKESKELPKTSQPSPGEFLELYEKLLEEGDEVLSIHLSS 88 (275)
T ss_pred CCCHHHHHHcCCEEEEEEEEEC-CEEeecCCCCCHHHHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 3347788999999999998776 4333222347889998888763322223334445554443 3444444444555
Q ss_pred CCCcchHHHHHhccccCceeEEEcCChhHHHhhCCCCCCCCCeEEEeccCCCceeeccCCCCCHHHHHHHHHhcCCCcee
Q 010469 230 LVGSESEVLADASRLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVT 309 (510)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~~~~~p~l~~~~~~~~~~~~y~~g~~~~~~i~~fi~~~~~p~~~ 309 (510)
.-+..+.....+++...+..+..+....+..-.+. ++... .... +...+.+++.+|+.........
T Consensus 89 ~lSgty~~a~~aa~~~~~~~i~ViDS~~~s~~~g~---------~v~~a----~~~~-~~G~s~~eI~~~l~~~~~~~~~ 154 (275)
T TIGR00762 89 GLSGTYQSARQAAEMVDEAKVTVIDSKSASMGLGL---------LVLEA----AKLA-EEGKSLEEILAKLEELRERTKL 154 (275)
T ss_pred chhHHHHHHHHHHhhCCCCCEEEECChHHHHHHHH---------HHHHH----HHHH-HcCCCHHHHHHHHHHHHhhcEE
Confidence 44555555555554333334554444433322221 00110 0011 2234788899998876655444
Q ss_pred ecCCCchhhhc
Q 010469 310 IFTRENAPSVF 320 (510)
Q Consensus 310 ~lt~~~~~~~~ 320 (510)
.+..+++..+.
T Consensus 155 ~f~v~~L~~L~ 165 (275)
T TIGR00762 155 YFVVDTLEYLV 165 (275)
T ss_pred EEEECcHHHHH
Confidence 44444444443
No 451
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=69.63 E-value=9 Score=27.47 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=34.3
Q ss_pred EEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccH----------------HHHHhCCCCcccEEEEEeCC
Q 010469 115 VEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN----------------ELAHEYDVQGFPTIYFFVDG 177 (510)
Q Consensus 115 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~----------------~~~~~~~v~~~P~~~~~~~g 177 (510)
++|++--||.|..+..+|+++. +.+-.|+...+. +=.+..|--++|.+.+ .+|
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~---------v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~ 73 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN---------VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDG 73 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC---------CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCC
Confidence 6899999999998888887653 444445554432 1133455557898855 445
No 452
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=68.70 E-value=19 Score=25.41 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=33.1
Q ss_pred EEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcc----cHHHHHhCCCCcccEEEE
Q 010469 115 VEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE----ENELAHEYDVQGFPTIYF 173 (510)
Q Consensus 115 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~----~~~~~~~~~v~~~P~~~~ 173 (510)
..|+.++|+.|++.+-.+... + ..+....++... .+++.+......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~-----~--l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEK-----G--IDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHc-----C--CCceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 467889999999998877654 2 234445555422 234555455667899864
No 453
>PRK11627 hypothetical protein; Provisional
Probab=68.45 E-value=3.5 Score=36.34 Aligned_cols=33 Identities=6% Similarity=0.119 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHcCCCcccccchhHHHHhccCC
Q 010469 187 TKDAIVTWIKKKIGPGIYNITTLDEAERVLTSE 219 (510)
Q Consensus 187 ~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~ 219 (510)
+.+.+..-+.+.+..-+.+|-+-.++..|+..+
T Consensus 158 ~~~~ie~~lN~~ls~vl~~i~~D~el~~fi~q~ 190 (192)
T PRK11627 158 SNKKIADAVNSVLSDVIADMAQDTSISEFIKQN 190 (192)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence 458888888888877777776667888877653
No 454
>COG3417 FlgN Collagen-binding surface adhesin SpaP (antigen I/II family) [General function prediction only]
Probab=68.24 E-value=4.1 Score=35.17 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=16.2
Q ss_pred CchhhHHHHHHHHHHHhhhhhh
Q 010469 1 MSTRYILLLSLTILLLFSPALA 22 (510)
Q Consensus 1 M~k~~~~~~~~~~~l~~~~c~~ 22 (510)
|.|...++.++++.|+|+||++
T Consensus 1 mtk~k~~~~il~~al~l~GCs~ 22 (200)
T COG3417 1 MTKMKIYASILLLALFLSGCSS 22 (200)
T ss_pred CchHHHHHHHHHHHHHHhhccc
Confidence 6555556666667789999986
No 455
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=68.22 E-value=15 Score=25.29 Aligned_cols=51 Identities=16% Similarity=0.111 Sum_probs=31.7
Q ss_pred EEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccH--HHHHhCCCCcccEEEE
Q 010469 116 EFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN--ELAHEYDVQGFPTIYF 173 (510)
Q Consensus 116 ~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~--~~~~~~~v~~~P~~~~ 173 (510)
.|+.++|+.|++..-.+... + ..+....++..... ++.+..+-..+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~-----~--i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEK-----G--LPYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHc-----C--CCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 57788999999887777654 2 23455555543322 2344456668897753
No 456
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=68.13 E-value=6.4 Score=36.53 Aligned_cols=29 Identities=14% Similarity=0.333 Sum_probs=24.2
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHH
Q 010469 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAK 479 (510)
Q Consensus 451 ~~~~vlv~f~~~~c~~C~~~~~~~~~~a~ 479 (510)
.++.+|+.|.-+.|++|+++.+.+.++.+
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~ 144 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVD 144 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhh
Confidence 35678999999999999999998876544
No 457
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=67.98 E-value=7.4 Score=30.87 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=24.4
Q ss_pred EEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccH
Q 010469 115 VEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN 157 (510)
Q Consensus 115 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~ 157 (510)
..|+.++|+.|++....|++- ++.|-.+|..+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~---------~i~~~~idi~~~~ 35 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH---------GVDYTAIDIVEEP 35 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc---------CCceEEecccCCc
Confidence 468899999999998777651 3666666665443
No 458
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=67.93 E-value=8.2 Score=31.71 Aligned_cols=35 Identities=11% Similarity=0.268 Sum_probs=24.6
Q ss_pred EEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccH
Q 010469 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN 157 (510)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~ 157 (510)
+..|+.+||+.|++....|++- ++.+-.+|..+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~---------gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH---------DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc---------CCCcEEeeccCCh
Confidence 4578899999999987666542 4666666665544
No 459
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=67.85 E-value=57 Score=25.50 Aligned_cols=100 Identities=16% Similarity=0.178 Sum_probs=70.9
Q ss_pred eChhcHHHHHh--CCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHH----HhCCCC-cccE
Q 010469 98 LKERNFSDVIE--NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELA----HEYDVQ-GFPT 170 (510)
Q Consensus 98 l~~~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~----~~~~v~-~~P~ 170 (510)
|+..++-++-. -....+|.|--+--+.-.++.+.+.++|+.+.. +.+..++-||-++.+-+. +.|+|. .-|.
T Consensus 6 l~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~-np~LsiIWIDPD~FPllv~yWektF~IDl~~Pq 84 (120)
T cd03074 6 LKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTD-NPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQ 84 (120)
T ss_pred ccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCc-CCCceEEEECCccCchhhHHHHhhcCcccCCCc
Confidence 44444444332 235678889889999999999999999999875 568999999998887554 345554 3588
Q ss_pred EEEEe----CCeeeeecCC---CCHHHHHHHHHHH
Q 010469 171 IYFFV----DGQHKAYNGG---RTKDAIVTWIKKK 198 (510)
Q Consensus 171 ~~~~~----~g~~~~y~g~---~~~~~l~~~i~~~ 198 (510)
+=++. ++.-..-.+. .+.+.|..||...
T Consensus 85 IGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 85 IGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred eeeEecccccceeEecccccccCcHHHHHHHHHhh
Confidence 88884 2233444343 6779999998754
No 460
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=67.20 E-value=5.2 Score=31.41 Aligned_cols=34 Identities=12% Similarity=0.067 Sum_probs=23.9
Q ss_pred EEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccH
Q 010469 115 VEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN 157 (510)
Q Consensus 115 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~ 157 (510)
..|+.|||+.|++....|++- ++.+-.+|..+++
T Consensus 2 ~iy~~~~C~~crka~~~L~~~---------~i~~~~~di~~~p 35 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR---------GVAYTFHDYRKDG 35 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc---------CCCeEEEecccCC
Confidence 568899999999987776642 3556666655543
No 461
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=67.17 E-value=19 Score=25.45 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=36.5
Q ss_pred EEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeCCeeeeecCCCCHHHHHHHH
Q 010469 116 EFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWI 195 (510)
Q Consensus 116 ~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~y~g~~~~~~l~~~i 195 (510)
.++.++|++|++.+-.+... + ..+....++-.......+..+-..+|++.. .+|... .+...|.+|+
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~-----g--l~~~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~~l-----~es~aI~~yL 69 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLK-----N--IPVEQIILQNDDEATPIRMIGAKQVPILEK-DDGSFM-----AESLDIVAFI 69 (71)
T ss_pred eEecCCCcHhHHHHHHHHHc-----C--CCeEEEECCCCchHHHHHhcCCCccCEEEe-CCCeEe-----ehHHHHHHHH
Confidence 56778999999887776543 2 234444455433223233334456888742 334321 2345565555
No 462
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=66.03 E-value=64 Score=27.49 Aligned_cols=124 Identities=16% Similarity=0.179 Sum_probs=75.7
Q ss_pred cEEeChhcHHHHHhCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCccc--------H----HHHHh
Q 010469 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE--------N----ELAHE 162 (510)
Q Consensus 95 v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~--------~----~~~~~ 162 (510)
+..++++.+.----.+++++|-=-|+.|+.-..-...|..+.++|++. ++.+...-|... . .++.+
T Consensus 19 ~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~--Gl~ILaFPCNQFg~QEp~~n~Ei~~f~~~r 96 (171)
T KOG1651|consen 19 AKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQ--GLEILAFPCNQFGNQEPGSNEEILNFVKVR 96 (171)
T ss_pred EecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhC--CeEEEEeccccccCcCCCCcHHHHHHHHhc
Confidence 444455444443447888877777999999998888999999999883 588888877532 2 23455
Q ss_pred CCCCcccEEEEEeCCeeeeecCCCCHHHHHHHHHHHcCCCcccccchhHHHHhccCCCeEEEEEecC
Q 010469 163 YDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNS 229 (510)
Q Consensus 163 ~~v~~~P~~~~~~~g~~~~y~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~~~~ 229 (510)
++.. +|-+-=+ ...|. ....+.+|+...-+..+-. .-.=++++|+-..+..+|.-|..
T Consensus 97 ~~~~-f~if~Ki------dVNG~-~~~PlykfLK~~~~~~lg~-~IkWNF~KFLVd~~G~vv~Ry~p 154 (171)
T KOG1651|consen 97 YGAE-FPIFQKI------DVNGD-NADPLYKFLKKVKGGPLGD-DIKWNFTKFLVDKDGHVVKRFSP 154 (171)
T ss_pred cCCC-CccEeEE------ecCCC-CCchHHHHHhhcCCCcccc-cceeeeEEEeECCCCcEEEeeCC
Confidence 6544 3333222 23333 5577888888776553222 00124556665555555554443
No 463
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=65.89 E-value=6.6 Score=32.27 Aligned_cols=36 Identities=11% Similarity=0.189 Sum_probs=26.1
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcC
Q 010469 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 499 (510)
Q Consensus 456 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~ 499 (510)
+..|+.+||+.|++.+..+.+. ++.|-.+|+..+..
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~--------gi~~~~idi~~~~~ 37 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH--------DIPFTERNIFSSPL 37 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc--------CCCcEEeeccCChh
Confidence 4578999999999988777642 45666677765544
No 464
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis [].
Probab=65.00 E-value=4.4 Score=31.11 Aligned_cols=21 Identities=14% Similarity=0.282 Sum_probs=12.3
Q ss_pred CchhhHHHHHHHHHHHhhhhhhhc
Q 010469 1 MSTRYILLLSLTILLLFSPALAKS 24 (510)
Q Consensus 1 M~k~~~~~~~~~~~l~~~~c~~~~ 24 (510)
|||.++. . ++.|+|+||.+..
T Consensus 1 mKk~ll~-~--~lallLtgCatqt 21 (97)
T PF06291_consen 1 MKKLLLA-A--ALALLLTGCATQT 21 (97)
T ss_pred CcHHHHH-H--HHHHHHcccceeE
Confidence 6665432 2 2245779998653
No 465
>COG3065 Slp Starvation-inducible outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=64.94 E-value=4.3 Score=34.54 Aligned_cols=24 Identities=17% Similarity=0.014 Sum_probs=14.5
Q ss_pred chhhHHHHHHHHHHHhhhhhhhcc
Q 010469 2 STRYILLLSLTILLLFSPALAKSQ 25 (510)
Q Consensus 2 ~k~~~~~~~~~~~l~~~~c~~~~~ 25 (510)
|+..+-+++.+++|+||||.+...
T Consensus 5 m~~~~~~l~~~laflLsgC~tiPk 28 (191)
T COG3065 5 MNMKKGALIGTLAFLLSGCVTIPK 28 (191)
T ss_pred hhhHHHHHHHHHHHHHhhcccCCh
Confidence 333444444455578999987643
No 466
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=64.87 E-value=4.7 Score=37.21 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=14.9
Q ss_pred CchhhHHHHHHHHHHHhhhhhh
Q 010469 1 MSTRYILLLSLTILLLFSPALA 22 (510)
Q Consensus 1 M~k~~~~~~~~~~~l~~~~c~~ 22 (510)
|++...++++++++++++||++
T Consensus 1 ~~~~~~~~~~~~~~~~lsgCs~ 22 (243)
T PRK10866 1 MTRMKYLVAAATLSLFLAGCSG 22 (243)
T ss_pred CchHHHHHHHHHHHHHHhhcCC
Confidence 7555555555556688999964
No 467
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=64.62 E-value=4 Score=32.01 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=13.6
Q ss_pred CchhhHHHHHHHHHHHhhhhhhhcc
Q 010469 1 MSTRYILLLSLTILLLFSPALAKSQ 25 (510)
Q Consensus 1 M~k~~~~~~~~~~~l~~~~c~~~~~ 25 (510)
|||..+ +.+.+|+|.||++...
T Consensus 1 Mrk~~~---~~l~~~lLvGCsS~~~ 22 (123)
T COG5633 1 MRKLCL---LSLALLLLVGCSSHQE 22 (123)
T ss_pred CceehH---HHHHHHHhhccCCCCC
Confidence 776654 2334566789987643
No 468
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=64.37 E-value=11 Score=30.27 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=25.3
Q ss_pred EEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccH
Q 010469 115 VEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN 157 (510)
Q Consensus 115 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~ 157 (510)
..|+.++|+.|++....|++- ++.+-.+|..+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~---------~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN---------GIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc---------CCceEEEecCCCh
Confidence 467899999999998777651 4667777776654
No 469
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=63.90 E-value=16 Score=28.85 Aligned_cols=45 Identities=11% Similarity=0.159 Sum_probs=37.6
Q ss_pred hCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcc
Q 010469 108 ENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE 155 (510)
Q Consensus 108 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~ 155 (510)
-+++++||.=-|+-|+.-. ....|+++.++|+.. ++.+...=|..
T Consensus 19 y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~--gl~ILaFPcnq 63 (108)
T PF00255_consen 19 YKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDK--GLEILAFPCNQ 63 (108)
T ss_dssp GTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGG--TEEEEEEEBST
T ss_pred cCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcC--CeEEEeeehHH
Confidence 4678888888899999988 778999999999873 58888888764
No 470
>PF13978 DUF4223: Protein of unknown function (DUF4223)
Probab=63.86 E-value=7.4 Score=25.38 Aligned_cols=24 Identities=8% Similarity=0.113 Sum_probs=16.0
Q ss_pred CchhhHHHHHHHHHHHhhhhhhhc
Q 010469 1 MSTRYILLLSLTILLLFSPALAKS 24 (510)
Q Consensus 1 M~k~~~~~~~~~~~l~~~~c~~~~ 24 (510)
|++...+.++..++-+|+||+..-
T Consensus 1 M~~~~K~~~~a~vl~~Lt~CTG~v 24 (56)
T PF13978_consen 1 MKKFIKIAVVAAVLATLTACTGHV 24 (56)
T ss_pred ChhHHHHHHHHHHHHHHhhcccee
Confidence 666655555555566899998653
No 471
>PRK11530 hypothetical protein; Provisional
Probab=63.69 E-value=4.3 Score=34.30 Aligned_cols=22 Identities=45% Similarity=0.622 Sum_probs=17.8
Q ss_pred CchhhHHHHHHHHHHHhhhhhh
Q 010469 1 MSTRYILLLSLTILLLFSPALA 22 (510)
Q Consensus 1 M~k~~~~~~~~~~~l~~~~c~~ 22 (510)
|.++.+.++++.++++|+||..
T Consensus 1 M~~~~~~~~~l~~l~lLagCa~ 22 (183)
T PRK11530 1 MTTRYLRLLLLGSLLLLAGCAQ 22 (183)
T ss_pred CceeehHHHHHHHHHHHhccCC
Confidence 7777777778888899999953
No 472
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=63.27 E-value=26 Score=27.86 Aligned_cols=45 Identities=16% Similarity=0.307 Sum_probs=31.3
Q ss_pred hhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEeC
Q 010469 127 ALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVD 176 (510)
Q Consensus 127 ~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~ 176 (510)
.+.+....+.+-....... .+..-+|.+-++|+|+.+|++++.++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~-----~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC-----PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC-----cceeEChhHHhhCCceEcCEEEEEcC
Confidence 5666666666555442212 22234699999999999999999987
No 473
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=62.65 E-value=16 Score=29.83 Aligned_cols=44 Identities=11% Similarity=0.250 Sum_probs=33.6
Q ss_pred ccHHHHHhCCCCcccEEEEEeCCe------------eeeecCCCCHHHHHHHHHHH
Q 010469 155 EENELAHEYDVQGFPTIYFFVDGQ------------HKAYNGGRTKDAIVTWIKKK 198 (510)
Q Consensus 155 ~~~~~~~~~~v~~~P~~~~~~~g~------------~~~y~g~~~~~~l~~~i~~~ 198 (510)
-+|.+-++|+|+.+|++++.+++. .....|..+.+.-.+.+.+.
T Consensus 59 IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~ 114 (130)
T TIGR02742 59 IDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQD 114 (130)
T ss_pred EChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHh
Confidence 469999999999999999998663 45667888876666555533
No 474
>PHA03075 glutaredoxin-like protein; Provisional
Probab=62.24 E-value=15 Score=29.02 Aligned_cols=36 Identities=19% Similarity=0.438 Sum_probs=27.3
Q ss_pred CeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeC
Q 010469 111 KFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDA 153 (510)
Q Consensus 111 ~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~ 153 (510)
|.++|.|--|-|+-|......+.++..+ ..+.+||.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~lede-------Y~ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDE-------YDILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcc-------ccEEEEEe
Confidence 4679999999999999998888665543 44555553
No 475
>COG5645 Predicted periplasmic lipoprotein [General function prediction only]
Probab=61.84 E-value=4.8 Score=28.94 Aligned_cols=14 Identities=43% Similarity=0.448 Sum_probs=9.7
Q ss_pred HHHHHHHhhhhhhh
Q 010469 10 SLTILLLFSPALAK 23 (510)
Q Consensus 10 ~~~~~l~~~~c~~~ 23 (510)
++++.++++||++-
T Consensus 7 ~l~v~lllSGC~SV 20 (80)
T COG5645 7 SLMVLLLLSGCGSV 20 (80)
T ss_pred HHHHHHHhCcccee
Confidence 33344789999875
No 476
>PRK06760 hypothetical protein; Provisional
Probab=61.66 E-value=4.9 Score=35.53 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=16.3
Q ss_pred Cchhh-HHHHHHHHHHHhhhhhhh
Q 010469 1 MSTRY-ILLLSLTILLLFSPALAK 23 (510)
Q Consensus 1 M~k~~-~~~~~~~~~l~~~~c~~~ 23 (510)
|||++ +++++++++..|+||+..
T Consensus 1 MKK~l~i~~~~~i~~~~fsaCS~~ 24 (223)
T PRK06760 1 MKKTLTIFMLTILLLISFSACSKK 24 (223)
T ss_pred CceeeehHHHHHHHHHHHhccCCC
Confidence 87776 445556666789999844
No 477
>PRK02944 OxaA-like protein precursor; Validated
Probab=61.57 E-value=5.9 Score=36.80 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=16.0
Q ss_pred CchhhHHH-HHHHHHHHhhhhhhh
Q 010469 1 MSTRYILL-LSLTILLLFSPALAK 23 (510)
Q Consensus 1 M~k~~~~~-~~~~~~l~~~~c~~~ 23 (510)
|||++.++ ++++++++++||+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~gc~~~ 24 (255)
T PRK02944 1 MKKKLGLLAMVVALMAILAGCSEV 24 (255)
T ss_pred CchHHHHHHHHHHHHHHHhccCCC
Confidence 77766544 556667889999743
No 478
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=59.64 E-value=25 Score=32.37 Aligned_cols=58 Identities=17% Similarity=0.111 Sum_probs=39.3
Q ss_pred hCCCeEEEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEEEe
Q 010469 108 ENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFV 175 (510)
Q Consensus 108 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~ 175 (510)
.++|+.+++.-+.|||.|-..+-.+-.+..++.. +.+. -+.++. .-.-..+|++.+..
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn----~~l~-~~~S~~-----~d~~pn~Ptl~F~~ 113 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN----FSLE-YHYSDP-----YDNYPNTPTLIFNN 113 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCC----eeeE-EeecCc-----ccCCCCCCeEEEec
Confidence 5789999999999999999998888777666644 4222 221111 11224689988775
No 479
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=59.60 E-value=15 Score=30.88 Aligned_cols=34 Identities=6% Similarity=0.154 Sum_probs=26.1
Q ss_pred EEEEeCC------CChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCC
Q 010469 456 LLEIYAP------WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 497 (510)
Q Consensus 456 lv~f~~~------~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n 497 (510)
||.|.++ +|++|.+++..|+.. ++.|-.+|++.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~--------~V~~~e~DVs~~ 41 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF--------RVKFDERDVSMD 41 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC--------CCcEEEEECCCC
Confidence 4567777 899999998888753 467778888765
No 480
>PRK10598 lipoprotein; Provisional
Probab=59.09 E-value=6.9 Score=34.07 Aligned_cols=22 Identities=14% Similarity=0.043 Sum_probs=14.3
Q ss_pred CchhhHHHHHHHHHHHhhhhhhh
Q 010469 1 MSTRYILLLSLTILLLFSPALAK 23 (510)
Q Consensus 1 M~k~~~~~~~~~~~l~~~~c~~~ 23 (510)
||+. ++..+++++++|+||.+.
T Consensus 1 mk~~-~~~~~~~~~~llsGC~sl 22 (186)
T PRK10598 1 MKKF-LFAAALLVSGLLVGCNQL 22 (186)
T ss_pred CchH-HHHHHHHHHHHHhccccc
Confidence 5544 334556666789999764
No 481
>PRK12559 transcriptional regulator Spx; Provisional
Probab=59.04 E-value=10 Score=31.08 Aligned_cols=37 Identities=11% Similarity=0.160 Sum_probs=26.4
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCc
Q 010469 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH 500 (510)
Q Consensus 456 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~ 500 (510)
+..|+.|+|+.|++....+.+- ++.+-.+|+..+...
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~--------gi~~~~~di~~~~~s 38 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN--------QIDYTEKNIVSNSMT 38 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc--------CCCeEEEEeeCCcCC
Confidence 5678999999999988777642 455566666655543
No 482
>TIGR00752 slp outer membrane lipoprotein, Slp family. Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli, which also contains a close paralog, Haemophilus influenzae and Pasteurella multocida and Vibrio cholera. The known members of the family to date share a motif LX[GA]C near the N-terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N-terminus. Slp from Escherichia coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation.
Probab=58.71 E-value=4.6 Score=35.09 Aligned_cols=20 Identities=5% Similarity=0.017 Sum_probs=12.4
Q ss_pred CchhhHHHHHHHHHHHhhhhhhh
Q 010469 1 MSTRYILLLSLTILLLFSPALAK 23 (510)
Q Consensus 1 M~k~~~~~~~~~~~l~~~~c~~~ 23 (510)
|||+++ +++++|+|+||++.
T Consensus 2 ~~~~ll---l~~~~l~LsgCasv 21 (182)
T TIGR00752 2 GKKGLL---FTALCFGLTGCIAP 21 (182)
T ss_pred ceEEeh---HHHHHHHHhcccCC
Confidence 555554 22334679999874
No 483
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=58.36 E-value=7 Score=35.44 Aligned_cols=23 Identities=17% Similarity=0.122 Sum_probs=15.3
Q ss_pred CchhhHHHHHHHHHHHhhhhhhh
Q 010469 1 MSTRYILLLSLTILLLFSPALAK 23 (510)
Q Consensus 1 M~k~~~~~~~~~~~l~~~~c~~~ 23 (510)
|||.++.+++.+.++.|.||...
T Consensus 2 mkk~~~~~~~a~~l~~l~gC~~~ 24 (234)
T PRK10523 2 MKKAIITALAAAGLFTLMGCNNR 24 (234)
T ss_pred chHHHHHHHHHHHHHHhhccCCc
Confidence 45554555566667889999654
No 484
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=57.69 E-value=20 Score=32.25 Aligned_cols=43 Identities=21% Similarity=0.377 Sum_probs=34.2
Q ss_pred HHHHhCCCCcccEEEEEeCCeeeeecCCCCHHHHHHHHHHHcCCCc
Q 010469 158 ELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKKKIGPGI 203 (510)
Q Consensus 158 ~~~~~~~v~~~P~~~~~~~g~~~~y~g~~~~~~l~~~i~~~~~~~~ 203 (510)
..++++||+++|++++ ...+...|..+.+.+..-|.+.+....
T Consensus 175 ~~A~e~gI~gVP~fv~---d~~~~V~Gaq~~~v~~~al~~~~~~~~ 217 (225)
T COG2761 175 AAAQEMGIRGVPTFVF---DGKYAVSGAQPYDVLEDALRQLLAEKA 217 (225)
T ss_pred HHHHHCCCccCceEEE---cCcEeecCCCCHHHHHHHHHHHHhccc
Confidence 4567899999999988 333566799999999999998886543
No 485
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=57.69 E-value=18 Score=29.69 Aligned_cols=38 Identities=8% Similarity=0.092 Sum_probs=26.9
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcCcc
Q 010469 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 501 (510)
Q Consensus 456 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~~~ 501 (510)
+..|+.++|+.|++....+.+- ++.|-.+|+..+....
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~--------~i~~~~~d~~~~~~s~ 39 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH--------QLSYKEQNLGKEPLTK 39 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc--------CCCeEEEECCCCCCCH
Confidence 4578899999999988777641 4666667776655443
No 486
>PHA03075 glutaredoxin-like protein; Provisional
Probab=57.49 E-value=12 Score=29.46 Aligned_cols=29 Identities=21% Similarity=0.502 Sum_probs=25.1
Q ss_pred CcEEEEEeCCCChhhhhhhHHHHHHHHHh
Q 010469 453 KDVLLEIYAPWCGHCQAFEPTYNKLAKHL 481 (510)
Q Consensus 453 ~~vlv~f~~~~c~~C~~~~~~~~~~a~~~ 481 (510)
+.+++.|-.|.|+-|......+.++.+.+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 56899999999999999999997777665
No 487
>PRK12559 transcriptional regulator Spx; Provisional
Probab=57.18 E-value=16 Score=30.00 Aligned_cols=34 Identities=9% Similarity=0.242 Sum_probs=22.9
Q ss_pred EEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCccc
Q 010469 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE 156 (510)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~ 156 (510)
+..|..++|+.|++....|++- ++.+-.+|..++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~---------gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN---------QIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc---------CCCeEEEEeeCC
Confidence 4578899999999987665542 355555555443
No 488
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=57.18 E-value=12 Score=29.89 Aligned_cols=36 Identities=11% Similarity=0.162 Sum_probs=25.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCCCcC
Q 010469 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 499 (510)
Q Consensus 456 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~~~~~~~~id~~~n~~ 499 (510)
+..|+.++|+.|++....+.+. ++.+-.+|+..+..
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~--------gi~~~~idi~~~~~ 37 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH--------QIPFEERNLFKQPL 37 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--------CCceEEEecCCCcc
Confidence 4478899999999988888762 35555667655443
No 489
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=56.94 E-value=6.1 Score=37.72 Aligned_cols=16 Identities=13% Similarity=0.061 Sum_probs=9.9
Q ss_pred HHHHHHHHHhhhhhhh
Q 010469 8 LLSLTILLLFSPALAK 23 (510)
Q Consensus 8 ~~~~~~~l~~~~c~~~ 23 (510)
+++++++++|+||+..
T Consensus 12 ~~~~~~~~~l~gC~~~ 27 (298)
T PRK04405 12 AASAGLALSLAGCSSN 27 (298)
T ss_pred HHHHHHHHHHHhhcCC
Confidence 3334445779999644
No 490
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=56.46 E-value=44 Score=23.67 Aligned_cols=51 Identities=20% Similarity=0.245 Sum_probs=33.0
Q ss_pred EEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcc----cHHHHHhCCCCcccEEE
Q 010469 115 VEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE----ENELAHEYDVQGFPTIY 172 (510)
Q Consensus 115 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~----~~~~~~~~~v~~~P~~~ 172 (510)
..|+.++|+.|++.+-.+.+. + ..+....+|..+ .+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~-----g--i~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKAL-----G--LELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHc-----C--CCCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 467889999999877666553 2 245555565432 24555555566899995
No 491
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=56.45 E-value=36 Score=24.01 Aligned_cols=69 Identities=16% Similarity=0.108 Sum_probs=40.9
Q ss_pred EEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCccc-HHHHHhCCCCcccEEEEEeCCeeeeecCCCCHHHHHH
Q 010469 115 VEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE-NELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVT 193 (510)
Q Consensus 115 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-~~~~~~~~v~~~P~~~~~~~g~~~~y~g~~~~~~l~~ 193 (510)
..|+.++|+.|++..-.+++. + ..+....+|.... +++.+......+|++. .+|.. ..+...|..
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~-----g--i~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~-----l~es~aI~~ 67 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEK-----G--VSVEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLV-----LYESRIIME 67 (73)
T ss_pred EEEECCCChhHHHHHHHHHHc-----C--CccEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEE-----EEcHHHHHH
Confidence 467889999999987766543 2 2344445554433 3454444566899763 34422 134566777
Q ss_pred HHHH
Q 010469 194 WIKK 197 (510)
Q Consensus 194 ~i~~ 197 (510)
|+.+
T Consensus 68 yL~~ 71 (73)
T cd03059 68 YLDE 71 (73)
T ss_pred HHHh
Confidence 7654
No 492
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=56.44 E-value=88 Score=25.34 Aligned_cols=65 Identities=17% Similarity=0.314 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhcCCCeEEEEEeCcccH----------HHHHhCCCCcccEEEEEeCCeeeeecCCCCHHHHHHHHHHHc
Q 010469 131 EYAAAATELKSANESVVLAKVDATEEN----------ELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKKKI 199 (510)
Q Consensus 131 ~~~~~~~~~~~~~~~v~~~~vd~~~~~----------~~~~~~~v~~~P~~~~~~~g~~~~y~g~~~~~~l~~~i~~~~ 199 (510)
.|....+.+++ .++.+.+.|...++ ++.++-|...+|-+++ ||.....-...+.++|.+|+.-..
T Consensus 28 ~~a~~~~~Lk~--~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dGeiv~~G~YPt~eEl~~~~~i~~ 102 (123)
T PF06953_consen 28 RFAADLDWLKE--QGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DGEIVKTGRYPTNEELAEWLGISF 102 (123)
T ss_dssp HHHHHHHHHHH--TT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTEEEEESS---HHHHHHHHT--G
T ss_pred HHHHHHHHHHh--CCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CCEEEEecCCCCHHHHHHHhCCCc
Confidence 34444444555 36999999998776 3344558889997654 887777777778899999986554
No 493
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=55.74 E-value=21 Score=30.52 Aligned_cols=47 Identities=21% Similarity=0.349 Sum_probs=35.2
Q ss_pred hCCCeEEEEEE-CCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCc
Q 010469 108 ENNKFVMVEFY-APWCGHCQALAPEYAAAATELKSANESVVLAKVDAT 154 (510)
Q Consensus 108 ~~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~ 154 (510)
..++++++.|| ..+---|-.+.-.|...+.+++..+..|..+.+|..
T Consensus 31 y~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~ 78 (196)
T KOG0852|consen 31 YKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSV 78 (196)
T ss_pred hcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccch
Confidence 35688888887 355556777888899999999887766777777743
No 494
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=55.71 E-value=8.5 Score=36.48 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=13.2
Q ss_pred Cchhh-HHHHHHH-HHHHhhhhhhh
Q 010469 1 MSTRY-ILLLSLT-ILLLFSPALAK 23 (510)
Q Consensus 1 M~k~~-~~~~~~~-~~l~~~~c~~~ 23 (510)
|||+. ++.++++ ++++|+||++.
T Consensus 1 m~~~~~~~~~~~~~~~~~l~~c~~~ 25 (283)
T PRK02998 1 MKKKKLFLGTIISCVVLALSACGSS 25 (283)
T ss_pred CchhHHHHHHHHHHHHHHHHhhCCC
Confidence 87444 4333333 33679999753
No 495
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=55.59 E-value=19 Score=28.70 Aligned_cols=34 Identities=9% Similarity=0.280 Sum_probs=24.0
Q ss_pred EEEEECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCccc
Q 010469 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE 156 (510)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~ 156 (510)
+..|+.++|+.|++....|++. ++.+-.+|..++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~---------gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH---------QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC---------CCceEEEecCCC
Confidence 3467889999999988777652 355666666544
No 496
>PRK12450 foldase protein PrsA; Reviewed
Probab=55.36 E-value=7.1 Score=37.55 Aligned_cols=20 Identities=10% Similarity=0.137 Sum_probs=12.3
Q ss_pred hhhHHHHHHHHHHHhhhhhh
Q 010469 3 TRYILLLSLTILLLFSPALA 22 (510)
Q Consensus 3 k~~~~~~~~~~~l~~~~c~~ 22 (510)
|.++++++++++++|+||++
T Consensus 6 k~i~~~~~~~~~~~l~gc~~ 25 (309)
T PRK12450 6 KLITGVVTLATVVTLSACQS 25 (309)
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 33344455555677889974
No 497
>COG2980 RlpB Rare lipoprotein B [Cell envelope biogenesis, outer membrane]
Probab=54.82 E-value=9.4 Score=32.58 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=15.3
Q ss_pred CchhhHHHHHHHHHHHhhhhhhh
Q 010469 1 MSTRYILLLSLTILLLFSPALAK 23 (510)
Q Consensus 1 M~k~~~~~~~~~~~l~~~~c~~~ 23 (510)
|++ +..+++++.+++|+||+-.
T Consensus 1 M~~-L~~~lL~~a~~~L~aCGFh 22 (178)
T COG2980 1 MRK-LKTLLLLAAVLLLAACGFH 22 (178)
T ss_pred Ccc-hHHHHHHHHHHHHhhccee
Confidence 766 4445555666889999854
No 498
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=54.64 E-value=8.8 Score=24.85 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=14.5
Q ss_pred CchhhHHHHHHHHHHHhhhhhhh
Q 010469 1 MSTRYILLLSLTILLLFSPALAK 23 (510)
Q Consensus 1 M~k~~~~~~~~~~~l~~~~c~~~ 23 (510)
|||.++ |++++.++.||-|-..
T Consensus 3 lKKsll-LlfflG~ISlSlCeeE 24 (46)
T PF03032_consen 3 LKKSLL-LLFFLGTISLSLCEEE 24 (46)
T ss_pred chHHHH-HHHHHHHcccchHHHh
Confidence 566654 4555667888999543
No 499
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=54.23 E-value=6.5 Score=29.20 Aligned_cols=55 Identities=20% Similarity=0.180 Sum_probs=43.5
Q ss_pred EECCCChHHhhhhHHHHHHHHHHhhcCCCeEEEEEeCcccHHHHHhCCCCcccEEEE
Q 010469 117 FYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (510)
Q Consensus 117 f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~ 173 (510)
|-+..-+.+......+..+.+..-+ ..+.+-.||..+++.+++.++|-..||++-
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~--~~~~LeVIDv~~~P~lAe~~~ivAtPtLik 57 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLG--GRYELEVIDVLEQPELAEEDRIVATPTLIK 57 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCT--TTEEEEEEETTTSHSHHTTTEEECHHHHHT
T ss_pred EECCCChHHHHHHHHHHHHHHhhCC--CcEEEEEEEcccCHhHHhHCCeeecceEee
Confidence 3344456667778888888876544 479999999999999999999999999753
No 500
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=53.66 E-value=9.3 Score=34.58 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=15.1
Q ss_pred CchhhHHHHH-HHHHHHhhhhhh
Q 010469 1 MSTRYILLLS-LTILLLFSPALA 22 (510)
Q Consensus 1 M~k~~~~~~~-~~~~l~~~~c~~ 22 (510)
||||++.+++ +++.|+|+||..
T Consensus 1 ~~~~~~~~~~~~~~~~~lsgC~~ 23 (219)
T PRK10510 1 MKKRVYLIAAVVSGALAVSGCTT 23 (219)
T ss_pred CcccHHHHHHHHHHHHHHhccCC
Confidence 8888876554 444467899963
Done!