Query 010470
Match_columns 510
No_of_seqs 1111 out of 2787
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 00:54:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010470.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010470hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0288 WD40 repeat protein Ti 100.0 5.7E-58 1.2E-62 396.1 36.1 452 40-510 4-459 (459)
2 KOG0271 Notchless-like WD40 re 100.0 6.6E-53 1.4E-57 361.2 26.3 310 185-510 126-479 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 8.2E-51 1.8E-55 352.8 32.7 282 223-510 173-458 (459)
4 KOG0271 Notchless-like WD40 re 100.0 3.7E-51 7.9E-56 350.5 26.0 290 215-510 105-437 (480)
5 KOG0286 G-protein beta subunit 100.0 5.4E-49 1.2E-53 325.9 35.4 290 216-510 46-343 (343)
6 KOG0265 U5 snRNP-specific prot 100.0 1.7E-44 3.7E-49 300.4 27.4 292 216-508 38-334 (338)
7 KOG0279 G protein beta subunit 100.0 5.2E-43 1.1E-47 288.7 31.6 286 216-510 6-311 (315)
8 KOG0272 U4/U6 small nuclear ri 100.0 3.6E-45 7.9E-50 317.8 19.7 268 186-468 187-458 (459)
9 KOG0315 G-protein beta subunit 100.0 1.2E-42 2.5E-47 281.8 28.4 267 238-510 11-286 (311)
10 KOG0282 mRNA splicing factor [ 100.0 4.3E-44 9.3E-49 316.4 19.6 297 211-510 200-503 (503)
11 KOG0295 WD40 repeat-containing 100.0 2.3E-42 5E-47 294.9 26.6 291 214-510 97-404 (406)
12 KOG0286 G-protein beta subunit 100.0 1.9E-42 4.1E-47 287.1 24.8 270 185-468 66-343 (343)
13 KOG0293 WD40 repeat-containing 100.0 3.8E-41 8.3E-46 291.8 29.7 297 208-510 207-511 (519)
14 KOG0285 Pleiotropic regulator 100.0 2.3E-41 4.9E-46 288.1 25.7 292 210-509 136-436 (460)
15 KOG0316 Conserved WD40 repeat- 100.0 5.6E-41 1.2E-45 269.9 25.8 289 212-509 4-296 (307)
16 KOG0284 Polyadenylation factor 100.0 3.4E-42 7.3E-47 298.0 19.3 282 222-510 93-378 (464)
17 KOG0315 G-protein beta subunit 100.0 3.1E-40 6.8E-45 267.7 28.7 287 188-491 12-309 (311)
18 KOG0263 Transcription initiati 100.0 3.8E-41 8.3E-46 315.4 26.6 285 210-500 363-703 (707)
19 KOG0273 Beta-transducin family 100.0 2.9E-40 6.3E-45 291.1 29.0 292 210-510 164-480 (524)
20 KOG0318 WD40 repeat stress pro 100.0 1.6E-39 3.4E-44 290.2 33.9 307 189-510 163-600 (603)
21 KOG0273 Beta-transducin family 100.0 7.3E-40 1.6E-44 288.6 30.6 314 188-510 193-521 (524)
22 KOG0279 G protein beta subunit 100.0 5.1E-40 1.1E-44 271.0 27.1 277 186-470 28-313 (315)
23 cd00200 WD40 WD40 domain, foun 100.0 4.5E-39 9.7E-44 296.7 36.8 286 219-510 3-289 (289)
24 KOG0266 WD40 repeat-containing 100.0 2.8E-39 6E-44 311.9 34.3 291 218-510 151-452 (456)
25 KOG0289 mRNA splicing factor [ 100.0 2.9E-38 6.3E-43 275.7 35.3 391 94-509 88-503 (506)
26 KOG0296 Angio-associated migra 100.0 2.3E-38 5.1E-43 270.6 30.2 287 217-510 56-396 (399)
27 PLN00181 protein SPA1-RELATED; 100.0 7.8E-37 1.7E-41 317.3 46.0 283 221-510 479-791 (793)
28 KOG0291 WD40-repeat-containing 100.0 5.2E-38 1.1E-42 291.9 32.7 289 215-510 297-610 (893)
29 KOG0291 WD40-repeat-containing 100.0 5E-37 1.1E-41 285.4 35.4 308 197-510 118-506 (893)
30 KOG0645 WD40 repeat protein [G 100.0 1.5E-36 3.4E-41 249.4 32.7 282 217-510 6-309 (312)
31 KOG0263 Transcription initiati 100.0 4.5E-38 9.8E-43 294.8 23.9 242 263-510 374-647 (707)
32 KOG0275 Conserved WD40 repeat- 100.0 1.4E-37 3.1E-42 261.7 23.0 297 211-510 198-507 (508)
33 KOG0643 Translation initiation 100.0 1.7E-36 3.7E-41 248.6 28.4 283 220-509 5-314 (327)
34 KOG0319 WD40-repeat-containing 100.0 1.9E-37 4.2E-42 287.7 24.8 310 187-510 118-575 (775)
35 KOG0276 Vesicle coat complex C 100.0 6.2E-37 1.3E-41 279.0 26.8 286 217-508 5-295 (794)
36 KOG1446 Histone H3 (Lys4) meth 100.0 1.9E-35 4E-40 249.1 33.4 287 218-509 7-300 (311)
37 KOG0278 Serine/threonine kinas 100.0 7.6E-38 1.7E-42 254.0 16.7 280 220-509 9-294 (334)
38 KOG1407 WD40 repeat protein [F 100.0 5.6E-36 1.2E-40 244.8 26.6 277 219-503 14-293 (313)
39 KOG0319 WD40-repeat-containing 100.0 3.2E-36 6.9E-41 279.7 28.0 289 215-509 313-616 (775)
40 KOG0318 WD40 repeat stress pro 100.0 3.1E-35 6.8E-40 262.8 33.2 306 201-510 35-348 (603)
41 KOG0306 WD40-repeat-containing 100.0 3.4E-36 7.3E-41 279.8 26.6 283 219-510 367-662 (888)
42 KOG0281 Beta-TrCP (transducin 100.0 1.2E-37 2.7E-42 264.4 15.5 267 224-510 196-475 (499)
43 KOG0284 Polyadenylation factor 100.0 1.9E-37 4.1E-42 268.6 15.7 268 187-469 109-379 (464)
44 KOG0306 WD40-repeat-containing 100.0 9.2E-36 2E-40 276.9 28.0 311 186-509 77-577 (888)
45 KOG0288 WD40 repeat protein Ti 100.0 1.9E-35 4E-40 256.7 27.1 268 187-467 188-458 (459)
46 KOG0295 WD40 repeat-containing 100.0 4.2E-36 9E-41 256.7 22.2 268 187-469 121-405 (406)
47 KOG0285 Pleiotropic regulator 100.0 5.4E-36 1.2E-40 255.3 21.5 245 258-510 142-387 (460)
48 KOG0772 Uncharacterized conser 100.0 2.8E-35 6E-40 262.5 25.4 296 212-509 154-484 (641)
49 KOG0640 mRNA cleavage stimulat 100.0 9.9E-35 2.1E-39 243.2 23.9 295 214-509 101-423 (430)
50 KOG0266 WD40 repeat-containing 100.0 2.2E-34 4.7E-39 278.0 28.7 270 189-470 174-454 (456)
51 KOG0292 Vesicle coat complex C 100.0 1.5E-34 3.3E-39 273.2 26.6 281 220-506 4-316 (1202)
52 KOG0313 Microtubule binding pr 100.0 3.4E-34 7.4E-39 246.4 26.1 275 223-509 103-415 (423)
53 KOG0283 WD40 repeat-containing 100.0 9.1E-35 2E-39 275.1 24.5 249 218-470 259-576 (712)
54 KOG0281 Beta-TrCP (transducin 100.0 2.5E-35 5.3E-40 250.4 16.5 262 186-474 207-481 (499)
55 KOG0268 Sof1-like rRNA process 100.0 3E-35 6.5E-40 251.3 16.2 280 217-509 58-342 (433)
56 KOG0316 Conserved WD40 repeat- 100.0 1.8E-33 3.9E-38 226.7 22.7 241 260-510 10-255 (307)
57 KOG0265 U5 snRNP-specific prot 100.0 1.4E-33 3E-38 235.4 22.6 245 259-510 39-294 (338)
58 KOG0282 mRNA splicing factor [ 100.0 1.2E-34 2.6E-39 256.8 17.1 249 257-510 204-460 (503)
59 KOG0296 Angio-associated migra 100.0 1.2E-32 2.6E-37 235.8 26.6 269 185-470 75-398 (399)
60 KOG0645 WD40 repeat protein [G 100.0 2.2E-32 4.7E-37 225.1 26.9 269 188-470 29-311 (312)
61 KOG0299 U3 snoRNP-associated p 100.0 2.3E-32 5E-37 240.9 29.0 278 218-500 135-443 (479)
62 KOG0276 Vesicle coat complex C 100.0 4.3E-33 9.3E-38 254.0 24.9 262 190-465 29-294 (794)
63 cd00200 WD40 WD40 domain, foun 100.0 8.9E-32 1.9E-36 248.0 32.6 267 187-468 22-289 (289)
64 KOG0647 mRNA export protein (c 100.0 3.7E-32 8.1E-37 227.1 26.8 275 222-500 24-311 (347)
65 KOG0292 Vesicle coat complex C 100.0 1.9E-32 4.1E-37 259.2 28.2 266 189-470 24-321 (1202)
66 KOG0278 Serine/threonine kinas 100.0 1.5E-33 3.2E-38 229.1 17.3 253 214-475 48-302 (334)
67 KOG0313 Microtubule binding pr 100.0 2.3E-32 5.1E-37 235.1 25.0 278 174-470 104-418 (423)
68 KOG0277 Peroxisomal targeting 100.0 1.2E-32 2.6E-37 224.5 21.9 277 229-510 12-307 (311)
69 KOG0274 Cdc4 and related F-box 100.0 3.7E-32 8E-37 261.0 29.0 270 224-510 207-480 (537)
70 PTZ00421 coronin; Provisional 100.0 1.9E-31 4.1E-36 256.1 32.8 267 224-493 19-314 (493)
71 PLN00181 protein SPA1-RELATED; 100.0 1.4E-30 3.1E-35 270.6 41.7 257 246-510 457-736 (793)
72 KOG0310 Conserved WD40 repeat- 100.0 4.6E-32 9.9E-37 240.9 25.6 275 225-508 26-305 (487)
73 KOG0289 mRNA splicing factor [ 100.0 8.9E-31 1.9E-35 229.1 32.8 250 215-469 251-505 (506)
74 KOG0300 WD40 repeat-containing 100.0 1E-31 2.3E-36 225.9 25.4 289 213-510 136-474 (481)
75 KOG0283 WD40 repeat-containing 100.0 5.1E-32 1.1E-36 256.5 24.9 246 261-510 260-574 (712)
76 KOG0305 Anaphase promoting com 100.0 1.9E-31 4.1E-36 246.3 27.6 271 229-510 181-459 (484)
77 KOG1273 WD40 repeat protein [G 100.0 1.3E-31 2.9E-36 225.0 24.1 293 212-510 12-320 (405)
78 KOG0294 WD40 repeat-containing 100.0 1.9E-31 4.2E-36 224.1 24.8 267 214-490 32-305 (362)
79 KOG0973 Histone transcription 100.0 2.6E-31 5.5E-36 258.2 28.6 283 222-509 9-352 (942)
80 KOG1407 WD40 repeat protein [F 100.0 1.1E-31 2.4E-36 219.7 21.9 242 261-508 14-257 (313)
81 KOG2096 WD40 repeat protein [G 100.0 6.6E-31 1.4E-35 221.2 27.1 288 217-509 78-399 (420)
82 KOG0275 Conserved WD40 repeat- 100.0 8.2E-33 1.8E-37 233.1 15.7 277 185-468 224-507 (508)
83 PTZ00420 coronin; Provisional 100.0 2.7E-30 5.9E-35 249.0 34.8 248 243-494 50-318 (568)
84 KOG0293 WD40 repeat-containing 100.0 4.9E-32 1.1E-36 235.4 20.4 271 189-471 239-514 (519)
85 KOG1036 Mitotic spindle checkp 100.0 1.6E-30 3.5E-35 218.2 27.9 273 224-502 12-294 (323)
86 KOG0310 Conserved WD40 repeat- 100.0 4.6E-31 1E-35 234.5 24.7 247 217-470 60-309 (487)
87 KOG0268 Sof1-like rRNA process 100.0 5.7E-32 1.2E-36 231.3 17.2 271 185-474 78-349 (433)
88 KOG0641 WD40 repeat protein [G 100.0 6.3E-29 1.4E-33 199.4 30.6 288 217-510 25-347 (350)
89 PTZ00421 coronin; Provisional 100.0 3.4E-29 7.4E-34 240.6 33.6 228 220-451 70-314 (493)
90 KOG0274 Cdc4 and related F-box 100.0 7E-30 1.5E-34 245.4 27.7 266 189-478 221-490 (537)
91 KOG1446 Histone H3 (Lys4) meth 100.0 4.5E-29 9.8E-34 210.6 28.4 247 259-510 6-260 (311)
92 KOG0294 WD40 repeat-containing 100.0 2.9E-29 6.2E-34 211.1 25.9 261 239-510 3-279 (362)
93 KOG2055 WD40 repeat protein [G 100.0 1.2E-29 2.5E-34 223.9 24.6 280 225-509 213-509 (514)
94 KOG0277 Peroxisomal targeting 100.0 4E-30 8.6E-35 209.8 19.5 240 225-469 60-308 (311)
95 KOG0308 Conserved WD40 repeat- 100.0 2.2E-30 4.8E-35 237.6 19.1 281 224-509 20-324 (735)
96 KOG0305 Anaphase promoting com 100.0 3E-29 6.5E-34 231.8 26.5 241 223-472 215-463 (484)
97 KOG0308 Conserved WD40 repeat- 100.0 7.4E-30 1.6E-34 234.2 20.6 313 188-510 39-391 (735)
98 KOG0641 WD40 repeat protein [G 100.0 4.4E-28 9.5E-33 194.6 28.2 251 213-470 77-349 (350)
99 PTZ00420 coronin; Provisional 100.0 3.7E-28 8E-33 234.3 32.5 247 192-452 50-318 (568)
100 KOG0301 Phospholipase A2-activ 100.0 5.3E-29 1.1E-33 230.3 25.4 277 216-510 5-286 (745)
101 KOG0643 Translation initiation 100.0 1.7E-28 3.7E-33 201.8 24.7 234 262-502 5-251 (327)
102 KOG1539 WD repeat protein [Gen 100.0 1.9E-28 4.1E-33 231.1 28.1 309 185-510 171-646 (910)
103 KOG0973 Histone transcription 100.0 7.2E-29 1.6E-33 241.3 24.3 281 187-472 26-357 (942)
104 KOG0299 U3 snoRNP-associated p 100.0 9.7E-29 2.1E-33 218.1 22.3 263 188-459 156-444 (479)
105 KOG0639 Transducin-like enhanc 100.0 5.2E-29 1.1E-33 221.9 20.7 278 222-509 416-701 (705)
106 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 3.3E-27 7.2E-32 219.4 34.0 268 237-510 1-277 (300)
107 KOG1408 WD40 repeat protein [F 100.0 2.1E-28 4.5E-33 226.9 24.7 292 217-509 361-710 (1080)
108 KOG1274 WD40 repeat protein [G 100.0 2.1E-27 4.5E-32 226.6 29.6 278 222-508 10-296 (933)
109 KOG0650 WD40 repeat nucleolar 100.0 9.6E-28 2.1E-32 218.3 24.1 292 211-510 386-733 (733)
110 KOG4283 Transcription-coupled 100.0 4.1E-27 8.9E-32 196.3 24.5 287 221-510 39-363 (397)
111 KOG0646 WD40 repeat protein [G 100.0 1.2E-27 2.6E-32 211.7 22.5 242 225-495 81-332 (476)
112 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 8.3E-26 1.8E-30 210.0 34.8 284 190-492 5-300 (300)
113 KOG2106 Uncharacterized conser 100.0 4.1E-26 8.9E-31 203.7 28.1 308 188-510 259-624 (626)
114 KOG0321 WD40 repeat-containing 100.0 5.8E-27 1.3E-31 214.9 22.7 280 231-510 55-389 (720)
115 KOG0647 mRNA export protein (c 100.0 1.6E-26 3.4E-31 193.6 23.2 239 265-510 25-279 (347)
116 KOG0300 WD40 repeat-containing 100.0 2E-27 4.3E-32 200.2 17.9 254 215-472 180-478 (481)
117 KOG0640 mRNA cleavage stimulat 100.0 4.3E-27 9.3E-32 197.5 19.4 279 186-469 124-425 (430)
118 KOG1539 WD repeat protein [Gen 100.0 6.3E-26 1.4E-30 214.2 29.0 309 191-510 129-604 (910)
119 KOG0301 Phospholipase A2-activ 100.0 1.5E-26 3.2E-31 214.2 23.8 259 188-470 27-288 (745)
120 KOG0646 WD40 repeat protein [G 100.0 1.9E-26 4E-31 204.2 23.1 256 247-510 18-305 (476)
121 KOG1332 Vesicle coat complex C 100.0 4.7E-27 1E-31 190.9 17.6 248 221-470 7-286 (299)
122 KOG0639 Transducin-like enhanc 100.0 4.3E-27 9.3E-32 209.8 18.3 238 224-469 464-703 (705)
123 KOG2106 Uncharacterized conser 100.0 7.9E-25 1.7E-29 195.6 32.0 277 221-510 196-519 (626)
124 KOG0269 WD40 repeat-containing 100.0 6.5E-27 1.4E-31 219.1 19.6 277 226-507 40-335 (839)
125 KOG0772 Uncharacterized conser 100.0 1.4E-26 3.1E-31 207.2 20.8 274 187-469 180-486 (641)
126 KOG1036 Mitotic spindle checkp 100.0 7.5E-26 1.6E-30 190.3 23.9 236 266-510 12-260 (323)
127 KOG0264 Nucleosome remodeling 99.9 2.8E-26 6E-31 202.7 21.5 244 222-470 121-404 (422)
128 KOG4328 WD40 protein [Function 99.9 4.8E-26 1.1E-30 201.0 22.6 291 218-510 179-493 (498)
129 KOG0264 Nucleosome remodeling 99.9 3E-26 6.5E-31 202.5 20.8 242 264-510 121-402 (422)
130 KOG0267 Microtubule severing p 99.9 7.5E-28 1.6E-32 223.7 10.9 254 238-503 5-259 (825)
131 KOG1274 WD40 repeat protein [G 99.9 1.6E-25 3.4E-30 214.0 26.2 243 264-510 10-260 (933)
132 KOG2048 WD40 repeat protein [G 99.9 9.9E-25 2.1E-29 201.8 30.7 276 224-508 24-315 (691)
133 KOG1332 Vesicle coat complex C 99.9 4.2E-26 9.1E-31 185.4 18.0 242 264-509 8-283 (299)
134 KOG0267 Microtubule severing p 99.9 2.3E-27 5E-32 220.4 10.4 239 218-462 21-260 (825)
135 KOG1063 RNA polymerase II elon 99.9 4.7E-25 1E-29 204.3 25.0 317 187-510 207-646 (764)
136 KOG2055 WD40 repeat protein [G 99.9 2.9E-25 6.4E-30 196.3 21.7 272 188-470 227-512 (514)
137 KOG1408 WD40 repeat protein [F 99.9 4E-25 8.6E-30 205.3 20.5 245 223-471 457-714 (1080)
138 KOG0269 WD40 repeat-containing 99.9 1.6E-25 3.5E-30 209.9 17.6 242 227-472 89-342 (839)
139 KOG4378 Nuclear protein COP1 [ 99.9 9.3E-25 2E-29 194.7 21.6 262 227-494 36-305 (673)
140 KOG2445 Nuclear pore complex c 99.9 5E-24 1.1E-28 179.1 23.7 260 222-509 10-315 (361)
141 KOG2919 Guanine nucleotide-bin 99.9 4E-24 8.8E-29 180.8 23.1 274 226-503 50-361 (406)
142 KOG0302 Ribosome Assembly prot 99.9 2.6E-24 5.7E-29 185.6 21.2 208 216-424 142-378 (440)
143 KOG1538 Uncharacterized conser 99.9 2.8E-24 6E-29 198.3 22.5 271 227-510 14-291 (1081)
144 KOG0270 WD40 repeat-containing 99.9 2.7E-24 5.8E-29 189.5 19.8 237 237-476 192-455 (463)
145 KOG4227 WD40 repeat protein [G 99.9 9.7E-24 2.1E-28 182.9 22.2 292 217-510 48-385 (609)
146 KOG0322 G-protein beta subunit 99.9 2E-24 4.4E-29 177.6 16.9 288 213-510 2-321 (323)
147 KOG4283 Transcription-coupled 99.9 1.4E-23 3.1E-28 175.3 21.6 209 264-473 40-279 (397)
148 KOG1273 WD40 repeat protein [G 99.9 1.1E-23 2.4E-28 177.6 20.7 236 270-510 26-278 (405)
149 KOG1034 Transcriptional repres 99.9 1E-23 2.2E-28 178.8 19.8 287 221-510 34-381 (385)
150 KOG2048 WD40 repeat protein [G 99.9 2.7E-22 5.9E-27 185.8 28.4 270 188-471 39-320 (691)
151 KOG0307 Vesicle coat complex C 99.9 2.2E-24 4.7E-29 211.3 14.4 276 230-510 11-325 (1049)
152 KOG0270 WD40 repeat-containing 99.9 5.6E-23 1.2E-27 181.2 21.7 270 231-510 131-447 (463)
153 KOG0321 WD40 repeat-containing 99.9 2.5E-23 5.5E-28 191.2 20.3 250 218-472 93-393 (720)
154 KOG1063 RNA polymerase II elon 99.9 2.7E-22 5.9E-27 186.1 25.1 315 187-510 280-697 (764)
155 KOG4328 WD40 protein [Function 99.9 1.7E-22 3.6E-27 178.8 21.3 277 187-470 201-495 (498)
156 KOG1009 Chromatin assembly com 99.9 2.8E-22 6.2E-27 174.8 21.3 290 188-508 28-368 (434)
157 KOG2096 WD40 repeat protein [G 99.9 8.6E-22 1.9E-26 166.5 22.3 241 261-509 80-357 (420)
158 KOG4378 Nuclear protein COP1 [ 99.9 1.7E-22 3.7E-27 180.4 18.9 257 246-510 11-278 (673)
159 KOG0644 Uncharacterized conser 99.9 7.8E-24 1.7E-28 200.0 10.3 276 217-509 182-465 (1113)
160 KOG0642 Cell-cycle nuclear pro 99.9 1E-22 2.2E-27 184.9 16.0 259 217-481 286-572 (577)
161 KOG1334 WD40 repeat protein [G 99.9 1.1E-22 2.4E-27 181.3 15.7 293 216-510 133-464 (559)
162 KOG0307 Vesicle coat complex C 99.9 6.9E-23 1.5E-27 200.9 15.7 243 226-473 65-330 (1049)
163 KOG0302 Ribosome Assembly prot 99.9 6.9E-22 1.5E-26 170.8 19.4 238 264-506 148-433 (440)
164 KOG1445 Tumor-specific antigen 99.9 4.6E-22 1E-26 182.8 19.0 123 217-340 71-200 (1012)
165 KOG0650 WD40 repeat nucleolar 99.9 1.3E-21 2.9E-26 178.6 21.3 242 261-509 394-677 (733)
166 KOG1188 WD40 repeat protein [G 99.9 1.8E-21 3.8E-26 166.3 19.4 270 238-509 41-343 (376)
167 COG2319 FOG: WD40 repeat [Gene 99.9 1.9E-19 4.2E-24 176.2 36.1 284 220-510 60-357 (466)
168 KOG1007 WD repeat protein TSSC 99.9 1.2E-20 2.5E-25 157.6 22.8 256 246-508 39-357 (370)
169 KOG1310 WD40 repeat protein [G 99.9 2.2E-21 4.8E-26 175.5 20.1 209 217-425 42-304 (758)
170 KOG1034 Transcriptional repres 99.9 1.1E-21 2.3E-26 166.7 16.9 243 223-469 87-382 (385)
171 PRK11028 6-phosphogluconolacto 99.9 1E-19 2.2E-24 170.6 30.9 267 240-510 5-302 (330)
172 KOG0303 Actin-binding protein 99.9 9.2E-21 2E-25 164.8 21.0 208 262-474 76-298 (472)
173 COG2319 FOG: WD40 repeat [Gene 99.9 7.3E-19 1.6E-23 172.1 37.5 287 215-510 145-440 (466)
174 KOG1538 Uncharacterized conser 99.9 4.3E-19 9.3E-24 164.4 32.5 226 194-423 22-292 (1081)
175 KOG2919 Guanine nucleotide-bin 99.9 2.4E-20 5.3E-25 158.1 21.3 236 270-510 52-325 (406)
176 KOG0642 Cell-cycle nuclear pro 99.9 2.5E-21 5.5E-26 175.9 14.7 247 262-510 289-559 (577)
177 KOG1517 Guanine nucleotide bin 99.9 7.2E-20 1.6E-24 177.8 24.6 284 223-510 1062-1379(1387)
178 KOG1240 Protein kinase contain 99.9 2.3E-19 4.9E-24 177.0 25.6 295 216-510 1039-1431(1431)
179 KOG2110 Uncharacterized conser 99.9 4.4E-18 9.5E-23 147.3 30.3 236 225-471 5-249 (391)
180 KOG0303 Actin-binding protein 99.9 1E-19 2.2E-24 158.4 19.6 206 220-427 76-297 (472)
181 KOG0649 WD40 repeat protein [G 99.8 5.4E-19 1.2E-23 144.1 22.4 232 269-509 12-271 (325)
182 KOG0649 WD40 repeat protein [G 99.8 4.7E-18 1E-22 138.7 26.4 231 185-424 21-274 (325)
183 KOG1963 WD40 repeat protein [G 99.8 1.3E-18 2.9E-23 166.6 27.2 281 223-510 203-536 (792)
184 KOG1523 Actin-related protein 99.8 6.4E-19 1.4E-23 149.5 22.0 204 222-427 7-239 (361)
185 KOG1587 Cytoplasmic dynein int 99.8 7.8E-19 1.7E-23 168.0 24.1 260 246-510 221-514 (555)
186 KOG4497 Uncharacterized conser 99.8 1.7E-18 3.7E-23 147.4 23.1 276 230-510 13-389 (447)
187 KOG1188 WD40 repeat protein [G 99.8 2.5E-19 5.4E-24 153.2 17.6 269 189-469 43-345 (376)
188 KOG1524 WD40 repeat-containing 99.8 5.7E-19 1.2E-23 159.6 19.4 262 223-508 12-282 (737)
189 KOG1587 Cytoplasmic dynein int 99.8 1.7E-18 3.6E-23 165.7 22.8 242 225-471 242-517 (555)
190 KOG1272 WD40-repeat-containing 99.8 1.4E-19 3E-24 160.8 14.1 268 224-504 128-401 (545)
191 PRK01742 tolB translocation pr 99.8 1.7E-18 3.7E-23 167.2 23.0 232 246-493 183-426 (429)
192 PF02239 Cytochrom_D1: Cytochr 99.8 3.6E-17 7.9E-22 152.6 30.8 290 215-510 26-345 (369)
193 PRK11028 6-phosphogluconolacto 99.8 2.3E-17 5E-22 154.7 29.7 263 193-470 9-304 (330)
194 KOG2110 Uncharacterized conser 99.8 1.7E-17 3.7E-22 143.7 25.0 231 268-509 6-245 (391)
195 KOG0771 Prolactin regulatory e 99.8 6.7E-19 1.4E-23 155.1 16.3 194 229-424 148-354 (398)
196 KOG2445 Nuclear pore complex c 99.8 1.1E-17 2.5E-22 141.2 21.4 212 264-510 10-254 (361)
197 KOG0771 Prolactin regulatory e 99.8 1.2E-17 2.6E-22 147.2 22.5 194 313-508 148-350 (398)
198 KOG1009 Chromatin assembly com 99.8 5.1E-18 1.1E-22 148.5 19.7 159 226-385 14-199 (434)
199 KOG1963 WD40 repeat protein [G 99.8 3.3E-17 7.1E-22 157.2 26.9 278 222-510 13-373 (792)
200 KOG2394 WD40 protein DMR-N9 [G 99.8 4.5E-18 9.8E-23 154.0 19.7 247 227-492 125-384 (636)
201 KOG0290 Conserved WD40 repeat- 99.8 4.3E-17 9.4E-22 136.6 23.7 278 218-502 38-356 (364)
202 KOG1445 Tumor-specific antigen 99.8 2.4E-18 5.1E-23 158.6 17.3 239 233-474 587-848 (1012)
203 KOG2111 Uncharacterized conser 99.8 1.1E-15 2.3E-20 130.1 29.9 269 228-507 8-317 (346)
204 PRK03629 tolB translocation pr 99.8 1.5E-16 3.2E-21 153.3 28.3 235 247-493 179-428 (429)
205 KOG1272 WD40-repeat-containing 99.8 4.1E-19 8.9E-24 157.8 9.5 229 269-509 131-359 (545)
206 KOG1524 WD40 repeat-containing 99.8 1.2E-17 2.5E-22 151.2 17.2 209 237-468 75-284 (737)
207 KOG1523 Actin-related protein 99.8 8.8E-17 1.9E-21 136.7 21.3 237 265-503 8-269 (361)
208 KOG4227 WD40 repeat protein [G 99.8 4.3E-17 9.4E-22 142.0 18.9 247 261-509 50-319 (609)
209 KOG2139 WD40 repeat protein [G 99.8 4E-16 8.6E-21 134.8 24.4 277 227-509 100-428 (445)
210 KOG1007 WD repeat protein TSSC 99.8 5E-17 1.1E-21 136.1 18.3 223 199-424 96-361 (370)
211 KOG2321 WD40 repeat protein [G 99.8 1E-16 2.3E-21 146.4 21.6 276 224-508 50-339 (703)
212 KOG0290 Conserved WD40 repeat- 99.8 8.7E-17 1.9E-21 134.8 19.2 236 223-461 94-357 (364)
213 KOG0644 Uncharacterized conser 99.8 1E-18 2.2E-23 165.8 7.6 237 259-510 182-424 (1113)
214 KOG3881 Uncharacterized conser 99.8 3.2E-16 6.9E-21 136.9 22.1 261 224-493 54-342 (412)
215 PRK01742 tolB translocation pr 99.8 2E-16 4.3E-21 152.9 22.5 219 218-451 196-426 (429)
216 PRK04922 tolB translocation pr 99.7 5.2E-16 1.1E-20 150.4 25.1 234 247-492 184-432 (433)
217 KOG1240 Protein kinase contain 99.7 4E-16 8.6E-21 154.5 24.0 249 257-510 1038-1332(1431)
218 PRK05137 tolB translocation pr 99.7 2.2E-15 4.8E-20 146.2 28.3 234 247-493 182-433 (435)
219 KOG2111 Uncharacterized conser 99.7 1.6E-15 3.4E-20 129.1 22.8 232 269-509 7-253 (346)
220 PF08614 ATG16: Autophagy prot 99.7 4E-17 8.6E-22 137.6 13.1 157 12-169 3-194 (194)
221 PRK02889 tolB translocation pr 99.7 1.8E-15 3.8E-20 146.1 26.2 234 247-493 176-425 (427)
222 KOG1517 Guanine nucleotide bin 99.7 6.6E-16 1.4E-20 150.7 22.0 247 225-473 1109-1384(1387)
223 PF02239 Cytochrom_D1: Cytochr 99.7 9.8E-15 2.1E-19 136.3 28.9 268 240-510 9-300 (369)
224 KOG1354 Serine/threonine prote 99.7 1.7E-15 3.7E-20 130.1 21.0 280 226-509 26-431 (433)
225 KOG4497 Uncharacterized conser 99.7 6.8E-15 1.5E-19 125.7 23.9 272 226-505 49-425 (447)
226 KOG1310 WD40 repeat protein [G 99.7 1.9E-16 4E-21 144.0 14.8 217 261-477 44-310 (758)
227 KOG2139 WD40 repeat protein [G 99.7 3.1E-15 6.6E-20 129.4 21.0 228 268-504 99-367 (445)
228 KOG0322 G-protein beta subunit 99.7 2.7E-16 5.8E-21 130.1 14.0 225 187-423 26-322 (323)
229 KOG1409 Uncharacterized conser 99.7 4.5E-15 9.7E-20 127.6 21.3 248 215-470 14-270 (404)
230 KOG2315 Predicted translation 99.7 1.2E-14 2.7E-19 133.0 24.6 269 226-510 35-388 (566)
231 PRK03629 tolB translocation pr 99.7 2.3E-14 5E-19 138.2 26.6 221 219-450 192-427 (429)
232 PF10282 Lactonase: Lactonase, 99.7 4.1E-13 8.8E-18 126.0 34.0 269 240-510 2-320 (345)
233 KOG3881 Uncharacterized conser 99.7 7.7E-15 1.7E-19 128.3 20.4 238 266-510 54-318 (412)
234 KOG2321 WD40 repeat protein [G 99.7 2.9E-14 6.3E-19 130.6 23.0 243 221-472 88-345 (703)
235 PRK04922 tolB translocation pr 99.7 2.8E-14 6.2E-19 138.3 24.1 204 217-426 195-413 (433)
236 PRK05137 tolB translocation pr 99.7 8.3E-14 1.8E-18 135.2 27.2 203 289-502 182-396 (435)
237 TIGR02800 propeller_TolB tol-p 99.7 9E-14 1.9E-18 135.3 27.0 232 247-490 170-416 (417)
238 PRK04792 tolB translocation pr 99.7 9.2E-14 2E-18 134.6 26.3 234 248-493 199-447 (448)
239 PRK00178 tolB translocation pr 99.6 2.2E-13 4.8E-18 132.6 27.7 234 248-493 180-428 (430)
240 PRK02889 tolB translocation pr 99.6 9E-14 2E-18 134.3 24.6 205 289-504 176-392 (427)
241 TIGR02658 TTQ_MADH_Hv methylam 99.6 4.6E-12 1E-16 115.5 32.3 257 247-510 27-328 (352)
242 PF10282 Lactonase: Lactonase, 99.6 5.3E-12 1.2E-16 118.4 33.5 261 225-490 36-345 (345)
243 KOG1334 WD40 repeat protein [G 99.6 1.5E-14 3.2E-19 130.0 14.3 251 260-510 135-422 (559)
244 PF08662 eIF2A: Eukaryotic tra 99.6 1.8E-13 3.9E-18 116.1 20.3 156 229-390 9-187 (194)
245 PF08662 eIF2A: Eukaryotic tra 99.6 2.6E-13 5.7E-18 115.1 20.8 148 271-424 9-179 (194)
246 KOG2041 WD40 repeat protein [G 99.6 2.9E-13 6.2E-18 127.4 21.7 276 225-508 14-333 (1189)
247 TIGR03300 assembly_YfgL outer 99.6 3.5E-12 7.6E-17 122.0 28.5 256 236-509 104-376 (377)
248 KOG2394 WD40 protein DMR-N9 [G 99.6 1.5E-13 3.3E-18 125.1 17.7 189 235-440 183-378 (636)
249 KOG2315 Predicted translation 99.6 1.1E-12 2.3E-17 120.4 23.0 252 227-492 75-410 (566)
250 KOG4547 WD40 repeat-containing 99.6 5.7E-13 1.2E-17 123.1 20.2 183 321-509 4-217 (541)
251 KOG0974 WD-repeat protein WDR6 99.6 6.7E-13 1.4E-17 130.3 21.7 138 191-341 150-289 (967)
252 KOG2314 Translation initiation 99.5 1.8E-12 3.9E-17 118.6 22.4 264 228-505 213-560 (698)
253 TIGR02800 propeller_TolB tol-p 99.5 3.1E-12 6.6E-17 124.5 26.1 205 289-504 170-386 (417)
254 KOG4547 WD40 repeat-containing 99.5 2.1E-12 4.6E-17 119.4 23.1 188 234-425 2-221 (541)
255 TIGR03300 assembly_YfgL outer 99.5 8E-12 1.7E-16 119.6 27.4 258 236-510 64-336 (377)
256 KOG0974 WD-repeat protein WDR6 99.5 7.9E-13 1.7E-17 129.8 20.3 271 224-510 6-286 (967)
257 TIGR02658 TTQ_MADH_Hv methylam 99.5 7.8E-11 1.7E-15 107.5 31.6 236 233-478 53-338 (352)
258 PRK00178 tolB translocation pr 99.5 8E-12 1.7E-16 121.7 26.9 202 218-425 191-407 (430)
259 COG5354 Uncharacterized protei 99.5 1E-11 2.2E-16 112.8 24.9 272 226-510 72-393 (561)
260 PRK01029 tolB translocation pr 99.5 1.9E-11 4.2E-16 117.5 28.7 238 247-494 165-426 (428)
261 PLN02919 haloacid dehalogenase 99.5 3.6E-11 7.9E-16 127.1 33.2 242 229-474 571-892 (1057)
262 KOG1354 Serine/threonine prote 99.5 2.2E-12 4.8E-17 111.3 19.3 243 266-510 24-357 (433)
263 KOG4190 Uncharacterized conser 99.5 1.6E-13 3.4E-18 125.4 12.3 281 218-508 728-1032(1034)
264 PRK04792 tolB translocation pr 99.5 7.2E-12 1.6E-16 121.5 24.7 207 220-433 212-433 (448)
265 COG2706 3-carboxymuconate cycl 99.5 3.3E-10 7.1E-15 99.4 31.0 263 246-509 15-318 (346)
266 PLN02919 haloacid dehalogenase 99.5 5.9E-11 1.3E-15 125.5 31.0 236 271-510 571-886 (1057)
267 COG5354 Uncharacterized protei 99.5 2E-11 4.3E-16 111.0 22.2 273 223-510 30-346 (561)
268 COG2706 3-carboxymuconate cycl 99.5 7.2E-10 1.6E-14 97.3 31.1 265 222-491 36-345 (346)
269 KOG0280 Uncharacterized conser 99.5 2.6E-11 5.6E-16 102.6 20.9 256 246-509 45-330 (339)
270 PRK01029 tolB translocation pr 99.5 5.7E-11 1.2E-15 114.3 25.9 209 220-432 179-411 (428)
271 KOG1912 WD40 repeat protein [G 99.4 1.2E-10 2.6E-15 111.1 25.7 212 212-424 42-304 (1062)
272 KOG0280 Uncharacterized conser 99.4 3.9E-11 8.6E-16 101.5 19.6 198 226-425 70-285 (339)
273 KOG4190 Uncharacterized conser 99.4 1.1E-12 2.3E-17 120.1 10.3 239 261-509 729-985 (1034)
274 KOG1064 RAVE (regulator of V-A 99.4 3.9E-12 8.4E-17 131.2 12.6 222 265-505 2206-2439(2439)
275 KOG2041 WD40 repeat protein [G 99.4 1.4E-11 3.1E-16 116.2 15.3 234 266-503 13-279 (1189)
276 KOG0309 Conserved WD40 repeat- 99.4 5E-12 1.1E-16 119.6 12.3 280 225-509 24-336 (1081)
277 PRK11138 outer membrane biogen 99.4 5.8E-10 1.2E-14 107.1 27.0 256 237-509 120-391 (394)
278 KOG1064 RAVE (regulator of V-A 99.4 5.2E-12 1.1E-16 130.3 13.3 198 222-435 2205-2409(2439)
279 PF04762 IKI3: IKI3 family; I 99.4 2E-09 4.3E-14 111.9 32.5 278 224-510 74-454 (928)
280 COG5170 CDC55 Serine/threonine 99.4 6.3E-11 1.4E-15 101.1 17.4 241 226-469 27-366 (460)
281 PF13360 PQQ_2: PQQ-like domai 99.4 9.8E-10 2.1E-14 98.1 26.4 219 246-476 2-236 (238)
282 PF08450 SGL: SMP-30/Gluconola 99.4 6.4E-09 1.4E-13 93.0 30.8 218 272-500 4-243 (246)
283 KOG1645 RING-finger-containing 99.3 4.5E-09 9.7E-14 93.2 28.1 256 249-509 175-458 (463)
284 PF08450 SGL: SMP-30/Gluconola 99.3 8.2E-09 1.8E-13 92.4 31.0 217 230-458 4-243 (246)
285 COG4946 Uncharacterized protei 99.3 2.7E-09 5.9E-14 96.5 26.9 218 274-501 273-507 (668)
286 PRK04043 tolB translocation pr 99.3 1.8E-09 3.9E-14 103.2 27.2 211 247-471 169-401 (419)
287 KOG1832 HIV-1 Vpr-binding prot 99.3 1.8E-12 3.9E-17 125.0 6.2 261 216-500 1092-1377(1516)
288 KOG4532 WD40-like repeat conta 99.3 9.5E-10 2.1E-14 92.1 19.7 225 278-502 83-322 (344)
289 PF15492 Nbas_N: Neuroblastoma 99.3 7.2E-09 1.6E-13 88.4 24.2 234 231-481 3-270 (282)
290 KOG1912 WD40 repeat protein [G 99.3 1.8E-10 4E-15 109.9 16.3 260 228-509 18-301 (1062)
291 COG4946 Uncharacterized protei 99.3 6.8E-09 1.5E-13 93.9 25.2 147 222-370 356-507 (668)
292 PRK11138 outer membrane biogen 99.3 2.7E-09 5.9E-14 102.5 24.6 260 236-510 68-351 (394)
293 KOG1409 Uncharacterized conser 99.3 2.6E-10 5.7E-15 98.7 15.0 243 259-510 16-268 (404)
294 PF13360 PQQ_2: PQQ-like domai 99.2 7.1E-09 1.5E-13 92.5 24.3 216 288-510 2-228 (238)
295 PRK04043 tolB translocation pr 99.2 1.5E-08 3.2E-13 97.0 27.1 200 289-502 169-387 (419)
296 KOG0882 Cyclophilin-related pe 99.2 9E-10 2E-14 98.8 16.5 252 224-478 8-313 (558)
297 KOG4532 WD40-like repeat conta 99.2 7.8E-09 1.7E-13 86.7 20.9 241 229-471 71-332 (344)
298 KOG1832 HIV-1 Vpr-binding prot 99.2 1.8E-11 3.9E-16 118.2 5.8 220 259-499 1093-1318(1516)
299 KOG2314 Translation initiation 99.2 8.7E-09 1.9E-13 95.1 21.8 222 269-501 212-464 (698)
300 PRK02888 nitrous-oxide reducta 99.2 2.5E-08 5.4E-13 96.1 25.8 254 240-501 69-450 (635)
301 COG5170 CDC55 Serine/threonine 99.2 1.3E-09 2.8E-14 93.2 14.7 242 266-509 25-364 (460)
302 PF04762 IKI3: IKI3 family; I 99.1 1.2E-07 2.6E-12 98.9 31.1 284 220-508 205-560 (928)
303 KOG1275 PAB-dependent poly(A) 99.1 1.3E-09 2.7E-14 106.2 15.1 184 236-424 146-342 (1118)
304 PF14583 Pectate_lyase22: Olig 99.1 2.6E-07 5.7E-12 84.2 28.7 273 231-509 41-378 (386)
305 KOG0882 Cyclophilin-related pe 99.1 2.5E-09 5.4E-14 96.1 15.4 274 185-467 19-369 (558)
306 KOG3914 WD repeat protein WDR4 99.1 1.6E-09 3.4E-14 96.1 13.3 161 270-433 65-232 (390)
307 PF07433 DUF1513: Protein of u 99.1 4.3E-07 9.3E-12 80.3 27.9 228 270-503 7-277 (305)
308 KOG1275 PAB-dependent poly(A) 99.1 8.9E-10 1.9E-14 107.2 11.4 180 321-510 146-340 (1118)
309 KOG4714 Nucleoporin [Nuclear s 99.1 2.7E-09 5.9E-14 89.0 12.6 167 216-382 80-255 (319)
310 KOG2695 WD40 repeat protein [G 99.1 4.7E-10 1E-14 97.2 8.5 161 326-491 228-401 (425)
311 PF07433 DUF1513: Protein of u 99.0 9.5E-07 2.1E-11 78.1 27.8 229 228-467 7-282 (305)
312 KOG4714 Nucleoporin [Nuclear s 99.0 7.4E-09 1.6E-13 86.5 13.7 196 228-425 39-255 (319)
313 KOG4649 PQQ (pyrrolo-quinoline 99.0 2.9E-07 6.3E-12 77.3 22.6 258 237-510 63-349 (354)
314 cd00216 PQQ_DH Dehydrogenases 99.0 3.2E-07 6.8E-12 90.4 26.9 261 237-510 61-422 (488)
315 KOG3914 WD repeat protein WDR4 99.0 5.3E-09 1.1E-13 92.8 12.5 162 227-391 64-233 (390)
316 KOG0309 Conserved WD40 repeat- 99.0 1.6E-09 3.5E-14 103.1 9.5 208 216-424 105-339 (1081)
317 PF15492 Nbas_N: Neuroblastoma 99.0 2.3E-07 4.9E-12 79.4 21.3 199 228-438 46-273 (282)
318 KOG4649 PQQ (pyrrolo-quinoline 99.0 1.4E-06 3E-11 73.3 25.1 143 237-383 23-167 (354)
319 KOG2114 Vacuolar assembly/sort 99.0 9.8E-08 2.1E-12 93.0 20.5 203 274-483 30-257 (933)
320 KOG2066 Vacuolar assembly/sort 99.0 3E-08 6.6E-13 95.7 17.0 186 268-470 40-233 (846)
321 KOG2695 WD40 repeat protein [G 99.0 3.2E-09 7E-14 92.2 9.4 158 232-393 218-388 (425)
322 KOG2066 Vacuolar assembly/sort 98.9 3.9E-08 8.4E-13 95.0 16.2 183 225-424 39-233 (846)
323 KOG1645 RING-finger-containing 98.9 2.4E-06 5.2E-11 76.3 25.8 244 218-470 186-461 (463)
324 cd00216 PQQ_DH Dehydrogenases 98.9 1.1E-06 2.4E-11 86.5 26.8 234 238-480 111-434 (488)
325 KOG1920 IkappaB kinase complex 98.9 7.7E-07 1.7E-11 90.2 24.5 241 224-472 67-324 (1265)
326 PF00400 WD40: WD domain, G-be 98.9 7.2E-09 1.6E-13 62.6 5.7 38 216-253 2-39 (39)
327 COG3391 Uncharacterized conser 98.8 8.7E-06 1.9E-10 77.4 28.6 256 249-507 13-278 (381)
328 PRK02888 nitrous-oxide reducta 98.8 1E-06 2.2E-11 85.2 21.8 217 233-459 200-450 (635)
329 PF00930 DPPIV_N: Dipeptidyl p 98.8 3.7E-06 8.1E-11 79.4 25.7 260 234-500 1-345 (353)
330 KOG2114 Vacuolar assembly/sort 98.8 1.3E-06 2.8E-11 85.4 22.0 202 227-433 27-252 (933)
331 PF06433 Me-amine-dh_H: Methyl 98.8 1.2E-05 2.7E-10 72.0 26.5 257 247-510 17-318 (342)
332 PF00400 WD40: WD domain, G-be 98.8 9.6E-09 2.1E-13 62.0 4.6 39 472-510 1-39 (39)
333 COG3391 Uncharacterized conser 98.7 3.4E-05 7.4E-10 73.4 29.0 261 227-493 32-309 (381)
334 PF04053 Coatomer_WDAD: Coatom 98.7 8.1E-06 1.8E-10 78.0 24.2 228 218-471 25-263 (443)
335 PF06433 Me-amine-dh_H: Methyl 98.7 4.1E-05 8.8E-10 68.8 26.5 243 229-480 39-330 (342)
336 PF06977 SdiA-regulated: SdiA- 98.7 1.2E-05 2.6E-10 70.3 22.8 203 304-509 16-247 (248)
337 KOG1920 IkappaB kinase complex 98.7 6.5E-06 1.4E-10 83.8 23.2 196 309-510 68-320 (1265)
338 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.7 7.1E-05 1.5E-09 74.1 30.5 268 237-510 69-488 (527)
339 PF11768 DUF3312: Protein of u 98.7 5.6E-05 1.2E-09 71.7 27.6 113 395-510 206-327 (545)
340 KOG3617 WD40 and TPR repeat-co 98.7 1.7E-06 3.6E-11 84.5 17.5 109 229-340 19-131 (1416)
341 KOG3621 WD40 repeat-containing 98.7 5.9E-06 1.3E-10 79.3 20.9 116 225-341 33-155 (726)
342 COG0823 TolB Periplasmic compo 98.6 3.1E-06 6.8E-11 80.6 18.3 201 290-499 174-386 (425)
343 PF00780 CNH: CNH domain; Int 98.6 5.7E-05 1.2E-09 68.9 26.1 228 235-481 5-266 (275)
344 PF06977 SdiA-regulated: SdiA- 98.6 5.7E-05 1.2E-09 66.1 23.2 199 219-421 15-247 (248)
345 PF03178 CPSF_A: CPSF A subuni 98.5 7.4E-05 1.6E-09 69.7 24.7 174 247-424 2-202 (321)
346 COG3386 Gluconolactonase [Carb 98.5 0.0001 2.2E-09 67.0 24.5 217 273-499 30-272 (307)
347 PF08596 Lgl_C: Lethal giant l 98.5 3.7E-05 8.1E-10 72.6 22.5 263 227-503 3-327 (395)
348 KOG3617 WD40 and TPR repeat-co 98.5 1.9E-06 4.1E-11 84.1 13.9 109 313-424 19-131 (1416)
349 COG0823 TolB Periplasmic compo 98.5 1.9E-05 4.2E-10 75.3 20.7 204 249-461 175-390 (425)
350 PF04053 Coatomer_WDAD: Coatom 98.5 9.6E-05 2.1E-09 70.8 25.0 218 266-509 31-259 (443)
351 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.5 0.00036 7.7E-09 69.2 28.1 238 237-481 120-501 (527)
352 PF11768 DUF3312: Protein of u 98.4 2E-05 4.4E-10 74.6 17.8 113 270-384 208-332 (545)
353 KOG1008 Uncharacterized conser 98.4 7E-08 1.5E-12 90.9 1.5 199 268-470 57-275 (783)
354 PF02897 Peptidase_S9_N: Proly 98.4 0.0006 1.3E-08 66.3 28.2 241 227-474 125-408 (414)
355 KOG1008 Uncharacterized conser 98.4 1E-07 2.2E-12 89.9 1.8 197 226-424 57-275 (783)
356 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.00021 4.6E-09 67.5 22.8 219 276-498 1-296 (353)
357 PF04841 Vps16_N: Vps16, N-ter 98.3 0.00064 1.4E-08 65.2 25.4 190 290-495 62-272 (410)
358 PF08553 VID27: VID27 cytoplas 98.3 7.9E-05 1.7E-09 75.3 19.0 140 363-503 493-639 (794)
359 COG3386 Gluconolactonase [Carb 98.3 0.00075 1.6E-08 61.4 23.6 217 232-459 31-274 (307)
360 PF03178 CPSF_A: CPSF A subuni 98.3 0.00043 9.4E-09 64.6 22.8 213 289-508 2-261 (321)
361 PF04841 Vps16_N: Vps16, N-ter 98.3 0.0022 4.8E-08 61.6 27.6 176 248-434 62-256 (410)
362 PF00780 CNH: CNH domain; Int 98.2 0.00081 1.8E-08 61.3 23.8 215 277-510 5-253 (275)
363 KOG3621 WD40 repeat-containing 98.2 2.6E-05 5.7E-10 75.0 13.5 116 266-382 32-155 (726)
364 PF08553 VID27: VID27 cytoplas 98.2 0.00011 2.5E-09 74.2 17.5 143 278-423 492-646 (794)
365 PHA02713 hypothetical protein; 98.2 0.0003 6.5E-09 70.5 20.4 224 248-482 273-545 (557)
366 PF05096 Glu_cyclase_2: Glutam 98.1 0.004 8.6E-08 54.4 24.1 185 311-502 46-250 (264)
367 KOG4499 Ca2+-binding protein R 98.1 0.0015 3.2E-08 54.8 19.6 208 279-493 27-264 (310)
368 PF08596 Lgl_C: Lethal giant l 98.1 0.00015 3.2E-09 68.6 15.5 220 217-461 78-327 (395)
369 KOG2395 Protein involved in va 98.1 0.00025 5.5E-09 66.3 16.4 139 362-503 344-492 (644)
370 KOG4441 Proteins containing BT 98.1 0.00055 1.2E-08 68.4 19.8 232 234-472 282-548 (571)
371 PF14783 BBS2_Mid: Ciliary BBS 98.1 0.00063 1.4E-08 50.3 14.9 101 312-419 2-109 (111)
372 KOG1897 Damage-specific DNA bi 98.0 0.011 2.3E-07 60.1 27.6 274 227-508 585-894 (1096)
373 PF14583 Pectate_lyase22: Olig 98.0 0.0081 1.8E-07 55.5 25.0 244 253-503 16-303 (386)
374 COG5276 Uncharacterized conser 98.0 0.0082 1.8E-07 52.3 27.1 268 227-510 88-367 (370)
375 PF05096 Glu_cyclase_2: Glutam 98.0 0.008 1.7E-07 52.5 23.3 186 269-459 46-249 (264)
376 TIGR03074 PQQ_membr_DH membran 98.0 0.0038 8.3E-08 64.2 24.6 200 279-478 194-485 (764)
377 PHA02713 hypothetical protein; 98.0 0.0012 2.7E-08 66.2 20.7 202 290-504 273-523 (557)
378 PF14783 BBS2_Mid: Ciliary BBS 98.0 0.0012 2.5E-08 49.0 14.6 100 270-376 2-109 (111)
379 KOG2079 Vacuolar assembly/sort 97.9 0.00023 4.9E-09 72.2 13.8 102 236-339 98-202 (1206)
380 PF14655 RAB3GAP2_N: Rab3 GTPa 97.9 0.0093 2E-07 56.4 23.6 89 230-319 6-118 (415)
381 PF14727 PHTB1_N: PTHB1 N-term 97.9 0.025 5.4E-07 53.7 29.4 266 236-508 36-356 (418)
382 KOG4441 Proteins containing BT 97.9 0.0013 2.8E-08 65.8 18.8 216 279-505 285-534 (571)
383 PF05694 SBP56: 56kDa selenium 97.8 0.027 5.8E-07 52.6 24.5 223 236-459 86-392 (461)
384 PF02897 Peptidase_S9_N: Proly 97.8 0.013 2.8E-07 57.0 24.5 219 269-495 125-383 (414)
385 KOG1897 Damage-specific DNA bi 97.8 0.06 1.3E-06 55.0 30.6 240 226-470 354-613 (1096)
386 KOG4640 Anaphase-promoting com 97.8 0.00013 2.9E-09 69.5 9.2 94 309-404 20-115 (665)
387 KOG2395 Protein involved in va 97.8 0.0017 3.7E-08 60.9 16.1 140 324-469 348-499 (644)
388 smart00320 WD40 WD40 repeats. 97.7 6.8E-05 1.5E-09 44.4 4.8 37 217-253 4-40 (40)
389 COG3490 Uncharacterized protei 97.7 0.017 3.7E-07 50.2 20.3 103 310-413 68-180 (366)
390 smart00320 WD40 WD40 repeats. 97.7 7.5E-05 1.6E-09 44.1 4.8 38 473-510 3-40 (40)
391 PRK13616 lipoprotein LpqB; Pro 97.7 0.0069 1.5E-07 60.7 20.9 185 310-507 350-563 (591)
392 PRK10115 protease 2; Provision 97.7 0.081 1.8E-06 54.7 32.9 240 227-473 128-397 (686)
393 PRK13616 lipoprotein LpqB; Pro 97.7 0.0098 2.1E-07 59.7 21.7 170 246-423 328-524 (591)
394 COG3204 Uncharacterized protei 97.7 0.019 4.2E-07 50.3 20.2 192 306-499 82-300 (316)
395 TIGR03118 PEPCTERM_chp_1 conse 97.7 0.034 7.5E-07 49.1 23.6 221 269-492 24-307 (336)
396 KOG4640 Anaphase-promoting com 97.7 0.00026 5.7E-09 67.6 9.4 92 267-360 20-114 (665)
397 COG3204 Uncharacterized protei 97.7 0.023 5E-07 49.8 20.1 163 263-426 81-265 (316)
398 TIGR03074 PQQ_membr_DH membran 97.6 0.036 7.7E-07 57.3 24.3 195 237-432 194-485 (764)
399 PF05694 SBP56: 56kDa selenium 97.6 0.047 1E-06 51.1 22.3 223 278-501 86-392 (461)
400 TIGR03118 PEPCTERM_chp_1 conse 97.6 0.048 1E-06 48.3 24.3 209 227-436 24-291 (336)
401 PF08606 Prp19: Prp19/Pso4-lik 97.6 0.0014 3E-08 43.3 8.8 58 81-138 12-69 (70)
402 PF14870 PSII_BNR: Photosynthe 97.5 0.066 1.4E-06 48.7 29.8 271 226-509 17-301 (302)
403 KOG4499 Ca2+-binding protein R 97.5 0.021 4.5E-07 48.2 17.1 142 268-412 109-272 (310)
404 PF14727 PHTB1_N: PTHB1 N-term 97.5 0.099 2.2E-06 49.8 24.0 143 279-424 37-204 (418)
405 PF07995 GSDH: Glucose / Sorbo 97.5 0.095 2.1E-06 49.0 26.3 233 227-465 3-330 (331)
406 KOG2444 WD40 repeat protein [G 97.4 0.00016 3.5E-09 60.3 4.3 140 282-425 33-178 (238)
407 PHA03098 kelch-like protein; P 97.4 0.012 2.5E-07 59.5 18.2 184 235-426 293-513 (534)
408 COG3490 Uncharacterized protei 97.4 0.038 8.2E-07 48.2 18.1 158 341-502 57-245 (366)
409 PF08317 Spc7: Spc7 kinetochor 97.4 0.051 1.1E-06 50.4 20.7 26 7-32 69-94 (325)
410 PRK09039 hypothetical protein; 97.4 0.052 1.1E-06 50.6 20.5 106 46-151 43-169 (343)
411 PF09726 Macoilin: Transmembra 97.4 0.023 5E-07 57.8 19.3 25 9-33 484-508 (697)
412 PRK11637 AmiB activator; Provi 97.4 0.16 3.5E-06 49.4 24.8 23 46-68 44-66 (428)
413 KOG2079 Vacuolar assembly/sort 97.3 0.00079 1.7E-08 68.4 8.5 105 362-469 98-202 (1206)
414 PHA03098 kelch-like protein; P 97.3 0.021 4.5E-07 57.7 18.7 187 277-472 293-513 (534)
415 PRK13684 Ycf48-like protein; P 97.3 0.15 3.3E-06 47.7 29.9 272 225-510 45-329 (334)
416 KOG2444 WD40 repeat protein [G 97.2 0.0018 3.8E-08 54.3 8.0 103 237-340 70-177 (238)
417 COG1520 FOG: WD40-like repeat 97.2 0.21 4.6E-06 47.7 28.4 196 235-435 67-279 (370)
418 PF13851 GAS: Growth-arrest sp 97.2 0.11 2.4E-06 44.2 18.9 73 28-104 10-82 (201)
419 PF15390 DUF4613: Domain of un 97.2 0.038 8.3E-07 53.2 17.2 151 266-424 18-186 (671)
420 PRK11637 AmiB activator; Provi 97.2 0.14 3E-06 49.9 21.6 77 45-121 50-126 (428)
421 COG1520 FOG: WD40-like repeat 97.1 0.26 5.7E-06 47.0 27.0 196 280-480 69-278 (370)
422 KOG2280 Vacuolar assembly/sort 97.1 0.09 1.9E-06 52.2 19.2 200 224-433 42-255 (829)
423 PHA02790 Kelch-like protein; P 97.1 0.051 1.1E-06 53.8 18.3 180 235-425 270-471 (480)
424 PF15390 DUF4613: Domain of un 97.1 0.31 6.8E-06 47.3 24.6 146 226-380 20-185 (671)
425 PHA02790 Kelch-like protein; P 97.1 0.05 1.1E-06 53.8 18.0 183 278-471 271-471 (480)
426 smart00787 Spc7 Spc7 kinetocho 97.1 0.24 5.1E-06 45.3 20.9 18 7-24 64-81 (312)
427 PF09726 Macoilin: Transmembra 97.1 0.2 4.3E-06 51.3 22.1 68 14-82 426-493 (697)
428 PF10473 CENP-F_leu_zip: Leuci 97.1 0.1 2.2E-06 40.9 17.8 69 46-114 21-89 (140)
429 PF04156 IncA: IncA protein; 97.0 0.059 1.3E-06 45.9 16.0 65 47-111 86-150 (191)
430 COG4257 Vgb Streptogramin lyas 97.0 0.19 4.2E-06 43.7 20.9 196 269-471 63-263 (353)
431 KOG3630 Nuclear pore complex, 97.0 0.0076 1.7E-07 62.0 11.6 142 269-411 102-260 (1405)
432 TIGR02604 Piru_Ver_Nterm putat 97.0 0.34 7.5E-06 46.1 25.9 143 226-372 14-204 (367)
433 PF15254 CCDC14: Coiled-coil d 97.0 0.065 1.4E-06 53.2 17.0 27 8-34 389-415 (861)
434 PF10647 Gmad1: Lipoprotein Lp 97.0 0.089 1.9E-06 47.0 16.9 146 353-504 25-187 (253)
435 COG3292 Predicted periplasmic 96.9 0.19 4.1E-06 48.4 19.0 270 225-507 164-442 (671)
436 KOG2280 Vacuolar assembly/sort 96.9 0.019 4E-07 56.8 12.5 180 223-405 81-270 (829)
437 TIGR02604 Piru_Ver_Nterm putat 96.9 0.052 1.1E-06 51.7 15.7 148 352-503 14-204 (367)
438 COG3823 Glutamine cyclotransfe 96.8 0.071 1.5E-06 44.3 13.6 178 278-458 55-247 (262)
439 KOG0977 Nuclear envelope prote 96.8 0.28 6E-06 47.8 19.8 45 46-90 89-133 (546)
440 PF14870 PSII_BNR: Photosynthe 96.8 0.38 8.2E-06 43.8 27.7 224 267-503 16-253 (302)
441 PF10168 Nup88: Nuclear pore c 96.8 0.56 1.2E-05 48.4 23.1 94 267-383 84-181 (717)
442 PRK10884 SH3 domain-containing 96.8 0.043 9.3E-07 46.5 12.8 24 45-68 89-112 (206)
443 PRK09039 hypothetical protein; 96.8 0.15 3.3E-06 47.5 17.6 90 46-142 78-167 (343)
444 PF12894 Apc4_WD40: Anaphase-p 96.8 0.0056 1.2E-07 37.8 5.4 32 226-258 12-43 (47)
445 PF10647 Gmad1: Lipoprotein Lp 96.7 0.44 9.5E-06 42.6 22.4 148 311-462 25-187 (253)
446 PF13851 GAS: Growth-arrest sp 96.6 0.37 8.1E-06 41.0 17.9 47 96-142 91-137 (201)
447 KOG2377 Uncharacterized conser 96.6 0.073 1.6E-06 49.6 13.5 144 354-500 25-171 (657)
448 COG4257 Vgb Streptogramin lyas 96.6 0.44 9.6E-06 41.6 22.1 237 227-471 63-306 (353)
449 PF05935 Arylsulfotrans: Aryls 96.6 0.93 2E-05 44.8 24.6 143 287-435 126-312 (477)
450 COG3074 Uncharacterized protei 96.5 0.11 2.4E-06 33.9 10.7 59 82-140 9-67 (79)
451 PF04849 HAP1_N: HAP1 N-termin 96.5 0.22 4.9E-06 44.5 15.6 98 44-141 162-270 (306)
452 KOG0980 Actin-binding protein 96.5 0.64 1.4E-05 47.3 20.2 65 90-154 465-529 (980)
453 PF12234 Rav1p_C: RAVE protein 96.5 0.17 3.7E-06 50.6 16.4 113 354-469 32-155 (631)
454 PLN02153 epithiospecifier prot 96.5 0.78 1.7E-05 43.2 20.6 147 321-472 85-286 (341)
455 KOG0994 Extracellular matrix g 96.4 0.83 1.8E-05 47.9 20.8 11 8-18 1517-1527(1758)
456 PF14655 RAB3GAP2_N: Rab3 GTPa 96.4 0.9 2E-05 43.4 24.8 81 354-434 310-408 (415)
457 PF12894 Apc4_WD40: Anaphase-p 96.4 0.011 2.3E-07 36.5 5.0 35 350-385 10-44 (47)
458 COG1579 Zn-ribbon protein, pos 96.4 0.55 1.2E-05 40.6 20.3 6 55-60 37-42 (239)
459 PF06005 DUF904: Protein of un 96.4 0.17 3.6E-06 34.5 11.4 52 86-137 13-64 (72)
460 KOG0999 Microtubule-associated 96.4 0.46 1E-05 45.4 17.4 33 46-78 47-79 (772)
461 KOG0250 DNA repair protein RAD 96.3 0.74 1.6E-05 48.3 20.1 15 357-371 623-637 (1074)
462 PRK10115 protease 2; Provision 96.3 1.7 3.6E-05 45.3 28.0 111 268-380 127-254 (686)
463 KOG0250 DNA repair protein RAD 96.3 0.54 1.2E-05 49.2 19.1 14 401-414 624-637 (1074)
464 KOG3630 Nuclear pore complex, 96.3 0.054 1.2E-06 56.1 12.0 143 353-500 102-261 (1405)
465 PF07888 CALCOCO1: Calcium bin 96.3 1.2 2.6E-05 43.5 20.8 26 47-72 141-166 (546)
466 PLN02153 epithiospecifier prot 96.3 1 2.2E-05 42.5 24.2 186 236-427 32-287 (341)
467 TIGR03548 mutarot_permut cycli 96.3 0.96 2.1E-05 42.3 20.7 106 321-427 72-197 (323)
468 PF07995 GSDH: Glucose / Sorbo 96.3 1 2.2E-05 42.2 26.9 230 269-507 3-330 (331)
469 PRK15422 septal ring assembly 96.2 0.21 4.5E-06 34.0 10.8 61 82-142 9-69 (79)
470 PF09730 BicD: Microtubule-ass 96.2 0.89 1.9E-05 46.3 19.9 104 46-149 31-137 (717)
471 PF04156 IncA: IncA protein; 96.2 0.61 1.3E-05 39.6 16.7 16 57-72 82-97 (191)
472 KOG1029 Endocytic adaptor prot 96.2 0.74 1.6E-05 46.0 18.6 43 112-154 472-514 (1118)
473 smart00787 Spc7 Spc7 kinetocho 96.2 0.74 1.6E-05 42.1 17.8 33 112-144 211-243 (312)
474 PRK10884 SH3 domain-containing 96.2 0.2 4.4E-06 42.6 13.3 38 112-149 125-162 (206)
475 KOG1029 Endocytic adaptor prot 96.2 0.59 1.3E-05 46.7 17.7 30 47-76 435-464 (1118)
476 COG3823 Glutamine cyclotransfe 96.2 0.33 7.2E-06 40.5 13.7 173 236-413 55-247 (262)
477 PF10146 zf-C4H2: Zinc finger- 96.2 0.42 9.1E-06 41.4 15.1 88 51-142 3-90 (230)
478 PLN00033 photosystem II stabil 96.2 1.3 2.7E-05 42.4 32.5 149 354-509 241-396 (398)
479 PF10481 CENP-F_N: Cenp-F N-te 96.1 0.74 1.6E-05 39.8 16.0 67 46-112 15-81 (307)
480 KOG0994 Extracellular matrix g 96.1 1.2 2.6E-05 46.8 20.1 9 14-22 1568-1576(1758)
481 PF14781 BBS2_N: Ciliary BBSom 96.1 0.4 8.8E-06 37.0 13.1 112 274-388 5-132 (136)
482 PF04111 APG6: Autophagy prote 96.1 0.23 4.9E-06 45.7 14.1 112 51-162 11-128 (314)
483 PF12234 Rav1p_C: RAVE protein 96.1 0.25 5.4E-06 49.4 15.2 111 311-424 31-156 (631)
484 PF08317 Spc7: Spc7 kinetochor 96.0 1.3 2.8E-05 41.2 19.1 40 100-139 211-250 (325)
485 PF14761 HPS3_N: Hermansky-Pud 96.0 0.77 1.7E-05 38.9 15.5 145 323-469 29-213 (215)
486 COG5167 VID27 Protein involved 96.0 0.17 3.7E-06 48.0 12.5 143 321-470 478-632 (776)
487 TIGR03547 muta_rot_YjhT mutatr 96.0 1.5 3.3E-05 41.4 21.6 40 332-371 168-209 (346)
488 COG4372 Uncharacterized protei 95.9 1.3 2.8E-05 40.5 19.0 29 103-131 149-177 (499)
489 COG1340 Uncharacterized archae 95.9 1.1 2.5E-05 39.8 18.5 57 46-103 135-191 (294)
490 COG4026 Uncharacterized protei 95.9 0.38 8.3E-06 40.0 12.9 97 51-148 105-206 (290)
491 PF12718 Tropomyosin_1: Tropom 95.9 0.67 1.5E-05 36.9 17.0 30 116-145 77-106 (143)
492 KOG4360 Uncharacterized coiled 95.9 1.1 2.3E-05 42.7 17.1 74 82-155 210-283 (596)
493 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.9 0.66 1.4E-05 36.5 17.1 25 50-74 4-28 (132)
494 PRK05560 DNA gyrase subunit A; 95.9 3 6.5E-05 44.1 27.7 306 84-423 423-771 (805)
495 COG5167 VID27 Protein involved 95.9 0.21 4.6E-06 47.4 12.7 138 362-503 478-624 (776)
496 TIGR02168 SMC_prok_B chromosom 95.9 1 2.3E-05 50.6 21.1 134 46-179 681-814 (1179)
497 PF04111 APG6: Autophagy prote 95.8 0.32 6.9E-06 44.8 13.8 95 55-149 42-136 (314)
498 PF10146 zf-C4H2: Zinc finger- 95.8 1.1 2.3E-05 39.0 16.1 100 56-155 4-103 (230)
499 PF12325 TMF_TATA_bd: TATA ele 95.8 0.59 1.3E-05 35.7 13.1 107 34-144 8-114 (120)
500 KOG2247 WD40 repeat-containing 95.8 0.0014 3.1E-08 60.9 -1.3 147 352-506 35-182 (615)
No 1
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=5.7e-58 Score=396.14 Aligned_cols=452 Identities=44% Similarity=0.653 Sum_probs=401.1
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 40 IISQGSEWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIK 119 (510)
Q Consensus 40 ~~~~~~~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~ 119 (510)
..+...++++++..+..+|++++++.+.+..|+..++.+.+.+++.+++++.++++|++|..++++++-+.. ..+.+.
T Consensus 4 ~~s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~--a~~~~~ 81 (459)
T KOG0288|consen 4 LYSQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREE--ATEKTL 81 (459)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 344556899999999999999999999999999999999999999999999999999999999999987743 344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhcchHHhhhhcCCceEE
Q 010470 120 ALELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIDRLKASGLEKLAKQQVDGVVR 199 (510)
Q Consensus 120 ~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 199 (510)
....+..|.++.+...+..+...+..+-+|.++.-++|..+|+.++.+++... ...+......+.+|.+.
T Consensus 82 t~~~~~~en~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~~~r~~e~la~~~~----------~l~~~~~r~~s~~ga~~ 151 (459)
T KOG0288|consen 82 TVDVLIAENLRIRSLNEIRELREQKAEFENAELALREMRRKMRIAERLAEALK----------DLGLKDLRRQSVDGAVP 151 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHhh----------hcchhhhhhhhhcCCCc
Confidence 44556667777777776677777778888999999999999999988876332 22333344455666655
Q ss_pred ecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc--ceecccccccceeEEEEec
Q 010470 200 RSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS--LSSTLYGCLGSVLDLAITH 277 (510)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~ 277 (510)
.... .++.+..+|..+...+..|.+.|..+.|-++...|++|+.|..|++|++..++ .+.++.+..++|+.+.|.+
T Consensus 152 ~~~~--d~~v~~~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~ 229 (459)
T KOG0288|consen 152 RTED--DHFVEDTLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDS 229 (459)
T ss_pred cccC--chhhhcccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecC
Confidence 4444 56788999999999999999999999999999999999999999999998776 6788889999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEE
Q 010470 278 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNAL 357 (510)
Q Consensus 278 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i 357 (510)
++++++++++|+.+++|++...+...++.+|.+.|+++.|.. ....+++|+.|.+|+.||+....|.+++...+.++.|
T Consensus 230 ~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI 308 (459)
T KOG0288|consen 230 DNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDI 308 (459)
T ss_pred CCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhc-cccceeeccccchhhhhhhhhhheeccccccccccce
Confidence 999999999999999999999999999999999999999987 4555999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCC
Q 010470 358 AFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGN 437 (510)
Q Consensus 358 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 437 (510)
+.+ +..+++|..|++|++||++++.+......+ +.|+++..+++|..+.+++.|.++.++|+++.+....+...+.
T Consensus 309 ~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g--g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~ 384 (459)
T KOG0288|consen 309 VCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLG--GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGF 384 (459)
T ss_pred Eec--ceeeeecccccceEEEeccCCceeeEeecC--cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccc
Confidence 886 677899999999999999999999998887 7999999999999999999999999999999999999999999
Q ss_pred eeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCc--CEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 438 RVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTA--PVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 438 ~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
...+.|+.++|||++.|+++||.||.|+||++.++++...+..... .|++++|+|.|..|++++.++.+.+|.
T Consensus 385 k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 385 KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 9999999999999999999999999999999999999988876444 599999999999999999999999994
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.6e-53 Score=361.18 Aligned_cols=310 Identities=27% Similarity=0.419 Sum_probs=282.8
Q ss_pred chHHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc-eecc
Q 010470 185 GLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL-SSTL 263 (510)
Q Consensus 185 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~ 263 (510)
.-..+++|+.|.++|+|+... ..+.++.++|...|.|++|+|||+.||+|+.||+|++||..+|+. ...+
T Consensus 126 ~g~~l~tGsGD~TvR~WD~~T---------eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l 196 (480)
T KOG0271|consen 126 TGSRLVTGSGDTTVRLWDLDT---------ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRAL 196 (480)
T ss_pred CCceEEecCCCceEEeeccCC---------CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccc
Confidence 345688899999999999665 457889999999999999999999999999999999999998876 4568
Q ss_pred cccccceeEEEEec-----CCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEE
Q 010470 264 YGCLGSVLDLAITH-----DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD 338 (510)
Q Consensus 264 ~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd 338 (510)
.+|...|++++|.| ..++|++++.||.|+|||+..+.++..+.+|+.+|+|+.|- +..++++|+.|++|++|+
T Consensus 197 ~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~ 274 (480)
T KOG0271|consen 197 RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWR 274 (480)
T ss_pred cCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEc--CCceEEecCCCceEEEEE
Confidence 89999999999965 67799999999999999999999999999999999999995 478999999999999999
Q ss_pred CCCCeEeeeeeecCc-eeEEEEc-----------CCCC-------------------------EEEEecCCCcEEEEECC
Q 010470 339 LHKGYCVNTIIFHSN-CNALAFS-----------MDGQ-------------------------TIFSGHIDGNLRLWDIQ 381 (510)
Q Consensus 339 ~~~~~~~~~~~~~~~-i~~i~~~-----------~~~~-------------------------~l~~~~~dg~i~i~d~~ 381 (510)
...|.+.+.+.+|.. |+.++++ |.++ .+++|+.|.++.+|+..
T Consensus 275 a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~ 354 (480)
T KOG0271|consen 275 ALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPF 354 (480)
T ss_pred ccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccc
Confidence 999999999988854 7777765 3333 49999999999999986
Q ss_pred CC-ceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC
Q 010470 382 TG-KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA 460 (510)
Q Consensus 382 ~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 460 (510)
.. +++....+|. .-|+.+.||||++++++++.|..|++||.++|+.+.+|++|-..+.. ++|+.|.++|++|+.
T Consensus 355 ~~kkpi~rmtgHq-~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYq----vawsaDsRLlVS~Sk 429 (480)
T KOG0271|consen 355 KSKKPITRMTGHQ-ALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQ----VAWSADSRLLVSGSK 429 (480)
T ss_pred ccccchhhhhchh-hheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEE----EEeccCccEEEEcCC
Confidence 54 4777778877 89999999999999999999999999999999999999999888876 999999999999999
Q ss_pred CCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 461 DGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 461 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
|.++++|++.+.++...+.+|.+.|.++.|+|||..+++|+.|..+++|.
T Consensus 430 DsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 430 DSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999999999999999999999999999999994
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.2e-51 Score=352.83 Aligned_cols=282 Identities=24% Similarity=0.373 Sum_probs=269.3
Q ss_pred ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecC--CCEEEEEeCCCeEEEEEcCCCC
Q 010470 223 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHD--NRSVIAASSSNNLYVWDVNSGR 300 (510)
Q Consensus 223 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~ 300 (510)
|-+.+|..+.||+|++.|+|||.+|.++||+..+...+.++.+|...|.++.|+|. +..+++|+.||++++|++.+..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 45678999999999999999999999999999999999999999999999999997 5689999999999999999989
Q ss_pred eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcCCCCEEEEecCCCcEEEEE
Q 010470 301 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWD 379 (510)
Q Consensus 301 ~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d 379 (510)
++..+.+|...|..++|+| ++.+|+|++.|.+-++||++++..+....+|+ .|.+++|.|||..+++|+.|..-+|||
T Consensus 253 ~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWD 331 (459)
T KOG0272|consen 253 PLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWD 331 (459)
T ss_pred chhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheee
Confidence 9999999999999999999 99999999999999999999998887777775 499999999999999999999999999
Q ss_pred CCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcC-CCCEEEEE
Q 010470 380 IQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP-DESYVAAG 458 (510)
Q Consensus 380 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~ 458 (510)
+++|+++..+.+|. .+|.++.|+|+|..|++|+.|++++|||++....+.++..|.+.+.. ++|+| .|.+|+++
T Consensus 332 lRtgr~im~L~gH~-k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~----Vk~~p~~g~fL~Ta 406 (459)
T KOG0272|consen 332 LRTGRCIMFLAGHI-KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQ----VKYSPQEGYFLVTA 406 (459)
T ss_pred cccCcEEEEecccc-cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhh----eEecccCCeEEEEc
Confidence 99999999999977 99999999999999999999999999999999999999999888766 99998 78999999
Q ss_pred cCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 459 SADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 459 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+.|++++||...++.+++++.+|.+.|.++.++||+.++++++.|.++++|.
T Consensus 407 syD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 407 SYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999999999999999999999999999999994
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.7e-51 Score=350.51 Aligned_cols=290 Identities=26% Similarity=0.477 Sum_probs=264.7
Q ss_pred ccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEE
Q 010470 215 STCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVW 294 (510)
Q Consensus 215 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 294 (510)
..|...+.||.++|.|+.|+|+|..|++|+.|.++++||+.+..+..+.++|...|.|++|+|||+.|++|+.||.|++|
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence 56888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCe-eEeecCCCCceEEEEEecC----CCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcCCCCEEEE
Q 010470 295 DVNSGRV-RHTLTGHTDKVCAVDVSKI----SSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFS 368 (510)
Q Consensus 295 d~~~~~~-~~~~~~~~~~v~~i~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~ 368 (510)
|..+|+. ...+.+|...|++++|.|. ...++++++.||.|+|||+..+.++..+.+|. +|+|+.|-- ..+|++
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG-~gliyS 263 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG-EGLIYS 263 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC-CceEEe
Confidence 9998874 5678999999999999874 35689999999999999999999999998885 599999963 358899
Q ss_pred ecCCCcEEEEECCCCceeeeecccccccEEEEEEc-----------CCCC-------------------------EEEEE
Q 010470 369 GHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLS-----------RSGN-------------------------IILTS 412 (510)
Q Consensus 369 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~-----------~~~~-------------------------~l~~~ 412 (510)
|+.|++|++|+...|.....+.+|. ..|+.++.+ |.++ .+++|
T Consensus 264 gS~DrtIkvw~a~dG~~~r~lkGHa-hwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSg 342 (480)
T KOG0271|consen 264 GSQDRTIKVWRALDGKLCRELKGHA-HWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSG 342 (480)
T ss_pred cCCCceEEEEEccchhHHHhhcccc-hheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEe
Confidence 9999999999999999999999987 888888776 3344 49999
Q ss_pred ecCCcEEEEEcCC-ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEe
Q 010470 413 GRDNLHNLFDIRS-LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWS 491 (510)
Q Consensus 413 ~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 491 (510)
++|.++.+|+... .+++....+|...+.. +.||||++||++++.|.+|++|+..+|+.+.+|++|-.+|..++|+
T Consensus 343 sDd~tlflW~p~~~kkpi~rmtgHq~lVn~----V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaws 418 (480)
T KOG0271|consen 343 SDDFTLFLWNPFKSKKPITRMTGHQALVNH----VSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWS 418 (480)
T ss_pred cCCceEEEecccccccchhhhhchhhheee----EEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEec
Confidence 9999999999764 4466666677766655 9999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEeeCCCeEEEcC
Q 010470 492 GLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 492 ~~~~~l~s~~~dg~i~iwd 510 (510)
.|.++|++|+.|.++++||
T Consensus 419 aDsRLlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 419 ADSRLLVSGSKDSTLKVWD 437 (480)
T ss_pred cCccEEEEcCCCceEEEEE
Confidence 9999999999999999996
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.4e-49 Score=325.86 Aligned_cols=290 Identities=21% Similarity=0.355 Sum_probs=271.4
Q ss_pred cceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEE
Q 010470 216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD 295 (510)
Q Consensus 216 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 295 (510)
+...+++||.+.|.++.|++|+++|++++.||.+.|||.-+......++-....|..++|+|.|+++++|+-|+...||+
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP 125 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence 35588999999999999999999999999999999999999888888888899999999999999999999999999999
Q ss_pred cCCC------CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcC-CCCEEE
Q 010470 296 VNSG------RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSM-DGQTIF 367 (510)
Q Consensus 296 ~~~~------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~-~~~~l~ 367 (510)
+.+. ...+.+.+|.+.+.|+.|.+ +..|++++.|.+..+||+++++.+..|.+|. .|.++.++| +++.++
T Consensus 126 ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFv 203 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFV 203 (343)
T ss_pred cccccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEE
Confidence 9855 35667899999999999975 6789999999999999999999999998884 599999999 999999
Q ss_pred EecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEE
Q 010470 368 SGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSC 447 (510)
Q Consensus 368 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (510)
+|+.|+..++||+|.+..++.|.+|. +.|++++|.|+|.-|++|+.|++.++||++..+.+..+. ......++++++
T Consensus 204 Sg~cD~~aklWD~R~~~c~qtF~ghe-sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys--~~~~~~gitSv~ 280 (343)
T KOG0286|consen 204 SGGCDKSAKLWDVRSGQCVQTFEGHE-SDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS--HDSIICGITSVA 280 (343)
T ss_pred ecccccceeeeeccCcceeEeecccc-cccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec--cCcccCCceeEE
Confidence 99999999999999999999999998 999999999999999999999999999999988888876 344556788899
Q ss_pred EcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 448 ISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 448 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
||..|++|++|..|.++.+||.-.++.+..+.+|.+.|+++..+|||..|++|+.|..++||.
T Consensus 281 FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 281 FSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999999999999999999999999999999999999999999999999995
No 6
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.7e-44 Score=300.39 Aligned_cols=292 Identities=25% Similarity=0.436 Sum_probs=268.7
Q ss_pred cceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCC-CCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEE
Q 010470 216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTN-TGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVW 294 (510)
Q Consensus 216 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 294 (510)
.+...+.+|.+.|..+.|+|+|.+|||||.|..|.+|++. ..+....+.+|.+.|..+.|.+|++.+++++.|.+|+.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 3556788999999999999999999999999999999964 344567788999999999999999999999999999999
Q ss_pred EcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCc
Q 010470 295 DVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGN 374 (510)
Q Consensus 295 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~ 374 (510)
|+++|+.+..+++|..-|.++..+..+..++.+++.||++++||+++..+++++.....++++.|..++..+++|+-|+.
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence 99999999999999999999986665677888999999999999999999999998999999999999999999999999
Q ss_pred EEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC----ceeeeEeecCCCeeecCceeEEEcC
Q 010470 375 LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS----LEVCGSLRATGNRVASNWSRSCISP 450 (510)
Q Consensus 375 i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~----~~~~~~~~~~~~~~~~~~~~~~~s~ 450 (510)
|++||++.+.....+.+|. .+|+.+..+|+|.++.+-+.|.++++||++- ...+..+.++..........++|+|
T Consensus 198 ikvWd~r~~d~~~~lsGh~-DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp 276 (338)
T KOG0265|consen 198 IKVWDLRKNDGLYTLSGHA-DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP 276 (338)
T ss_pred eeeeccccCcceEEeeccc-CceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC
Confidence 9999999999999999998 9999999999999999999999999999984 3446777777666655566689999
Q ss_pred CCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEE
Q 010470 451 DESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCV 508 (510)
Q Consensus 451 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i 508 (510)
++.++.+|+.|..+++||......+..+++|.+.|+++.|+|....|.+|+.|.+|++
T Consensus 277 ~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 277 NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred CCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 9999999999999999999999999999999999999999999999999999999875
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-43 Score=288.66 Aligned_cols=286 Identities=27% Similarity=0.478 Sum_probs=251.6
Q ss_pred cceeeccccccceEEEEEecC-CCEEEEeeCCCeEEEEeCC-----CCcceecccccccceeEEEEecCCCEEEEEeCCC
Q 010470 216 TCKHKINAHEGGCASILFEYN-SARLISGGQDKSIKLWDTN-----TGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSN 289 (510)
Q Consensus 216 ~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 289 (510)
....++++|++.|+.++..+. ...+++++.|.++.+|++. .|.+++.+.||...|..+..++||++.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 356689999999999999986 5688999999999999875 4667889999999999999999999999999999
Q ss_pred eEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC---ceeEEEEcCC--CC
Q 010470 290 NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS---NCNALAFSMD--GQ 364 (510)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~i~~i~~~~~--~~ 364 (510)
.+++||+.+++..+.|.+|...|.+++|+| ++..+++|+.|.+|++||+. +.+..++.... -|+|++|+|+ ..
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 999999999999999999999999999999 89999999999999999996 55555655443 3999999997 78
Q ss_pred EEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCce
Q 010470 365 TIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWS 444 (510)
Q Consensus 365 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 444 (510)
+|++++.|++|++||+++.+....+.+|. +.++.+.+||||...++|+.||.+.+||++.++.+..+.... .+ .
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~-~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~-~v----~ 237 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGHS-GYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFD-IV----N 237 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhcccccc-ccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCC-eE----e
Confidence 99999999999999999999988888887 999999999999999999999999999999999877775443 33 3
Q ss_pred eEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccc----c-----CcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 445 RSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE----H-----TAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 445 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~-----~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
.++|+|+.-+|+.+...+ |+|||+.++..+..++. . .....+++|++||..|++|..|+.|++|.
T Consensus 238 sl~fspnrywL~~at~~s-IkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 238 SLCFSPNRYWLCAATATS-IKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred eEEecCCceeEeeccCCc-eEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 489999988888877554 99999999988777643 1 12246789999999999999999999993
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.6e-45 Score=317.78 Aligned_cols=268 Identities=23% Similarity=0.377 Sum_probs=252.7
Q ss_pred hHHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecC--CCEEEEeeCCCeEEEEeCCCCcceecc
Q 010470 186 LEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYN--SARLISGGQDKSIKLWDTNTGSLSSTL 263 (510)
Q Consensus 186 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~ 263 (510)
...+++++.+|.+++|+... .....+|.||.+.|.++.|+|. +..+|||+.||++++|++++..++..+
T Consensus 187 s~~laT~swsG~~kvW~~~~---------~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l 257 (459)
T KOG0272|consen 187 SKHLATGSWSGLVKVWSVPQ---------CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDL 257 (459)
T ss_pred CCeEEEeecCCceeEeecCC---------cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhh
Confidence 45678899999999998544 2467899999999999999996 568999999999999999999999999
Q ss_pred cccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 010470 264 YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY 343 (510)
Q Consensus 264 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 343 (510)
.+|...|..++|+|+|++|.+++.|.+-++||+.++..+....||...|.+++|+| ++.++++||.|..-+|||+++|.
T Consensus 258 ~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr 336 (459)
T KOG0272|consen 258 EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGR 336 (459)
T ss_pred hcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecC-CCceeeccCccchhheeecccCc
Confidence 99999999999999999999999999999999999999888899999999999999 99999999999999999999999
Q ss_pred EeeeeeecC-ceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcC-CCCEEEEEecCCcEEEE
Q 010470 344 CVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSR-SGNIILTSGRDNLHNLF 421 (510)
Q Consensus 344 ~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~i~ 421 (510)
++..+.+|. +|.++.|+|+|..+++|+.|++++|||++..+.+..+..|. .-|+.++|+| .|.+|++++.|++++||
T Consensus 337 ~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~-nlVS~Vk~~p~~g~fL~TasyD~t~kiW 415 (459)
T KOG0272|consen 337 CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHS-NLVSQVKYSPQEGYFLVTASYDNTVKIW 415 (459)
T ss_pred EEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceeccccc-chhhheEecccCCeEEEEcccCcceeee
Confidence 999998885 59999999999999999999999999999999999999988 8999999999 78899999999999999
Q ss_pred EcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEe
Q 010470 422 DIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWS 468 (510)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd 468 (510)
..+++.+++.+.+|...+.+ +.++||+.+|++++.|.++++|.
T Consensus 416 s~~~~~~~ksLaGHe~kV~s----~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 416 STRTWSPLKSLAGHEGKVIS----LDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCCCcccchhhcCCccceEE----EEeccCCceEEEeccCceeeecc
Confidence 99999999999999998876 99999999999999999999996
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.2e-42 Score=281.83 Aligned_cols=267 Identities=26% Similarity=0.449 Sum_probs=242.5
Q ss_pred CEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC--eeEeecCCCCceEEE
Q 010470 238 ARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR--VRHTLTGHTDKVCAV 315 (510)
Q Consensus 238 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~i 315 (510)
-+|+++|.|.+|++|...+|.+.+++....+.|+.+.+.|+++.|++++. ..|++||++++. ++.+|.+|...|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 48999999999999999999999999988999999999999999988876 479999999876 688999999999999
Q ss_pred EEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccc
Q 010470 316 DVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLA 395 (510)
Q Consensus 316 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 395 (510)
.|.. +++.+++||.||+++|||++...+.+.+...++|+++..+|+...|++|..+|.|++||+....+...+......
T Consensus 90 gF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEee-cCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 9998 899999999999999999999888888889999999999999999999999999999999988777777666668
Q ss_pred cEEEEEEcCCCCEEEEEecCCcEEEEEcCCc------eeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470 396 AVTSISLSRSGNIILTSGRDNLHNLFDIRSL------EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI 469 (510)
Q Consensus 396 ~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~ 469 (510)
+|.++.+.|||.+++++...|..++|++-+. .++..++.+...+. .+.+|||+++|+++|.|.+++||++
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il----~C~lSPd~k~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHIL----RCLLSPDVKYLATCSSDKTVKIWNT 244 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEE----EEEECCCCcEEEeecCCceEEEEec
Confidence 9999999999999999999999999998753 34445555554443 3789999999999999999999999
Q ss_pred CCc-ceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 470 SKA-DIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 470 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
++. +....+.+|...+.+++||.||.||++++.|+.+++||
T Consensus 245 ~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 245 DDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred CCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence 987 66778889999999999999999999999999999997
No 10
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.3e-44 Score=316.41 Aligned_cols=297 Identities=21% Similarity=0.393 Sum_probs=265.6
Q ss_pred cCCCccceeeccccccceEEEEEec-CCCEEEEeeCCCeEEEEeCCC-CcceecccccccceeEEEEecCCCEEEEEeCC
Q 010470 211 STVPSTCKHKINAHEGGCASILFEY-NSARLISGGQDKSIKLWDTNT-GSLSSTLYGCLGSVLDLAITHDNRSVIAASSS 288 (510)
Q Consensus 211 ~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 288 (510)
..+|.+..+++.||+.+|+++.|.| .+.+|++++.|+.|+||++-. +.+++++.+|..+|.+++|+++|..+++++.|
T Consensus 200 c~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD 279 (503)
T KOG0282|consen 200 CYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFD 279 (503)
T ss_pred eeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecc
Confidence 4468889999999999999999999 889999999999999999865 89999999999999999999999999999999
Q ss_pred CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEE
Q 010470 289 NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIF 367 (510)
Q Consensus 289 ~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~ 367 (510)
+.|++||+++|+++..+. -...++|+.|+|++.+.|++|+.|+.|+.||+++++.++.+..+ +.+..+.|-++|+.++
T Consensus 280 ~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFi 358 (503)
T KOG0282|consen 280 RFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFI 358 (503)
T ss_pred eeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEe
Confidence 999999999999999887 45678999999977799999999999999999999999888776 5699999999999999
Q ss_pred EecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCce---eeeEeecCCCeeecCce
Q 010470 368 SGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLE---VCGSLRATGNRVASNWS 444 (510)
Q Consensus 368 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~~ 444 (510)
+.+.|++++||+.+.+-++..+.........++..+|+++++++-+.|+.|.+|.+...- ....+.+| .+...-+
T Consensus 359 ssSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh--~vaGys~ 436 (503)
T KOG0282|consen 359 SSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGH--SVAGYSC 436 (503)
T ss_pred eeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcce--eccCcee
Confidence 999999999999999888777766655678899999999999999999999999875321 12223333 3333445
Q ss_pred eEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCC-cEEEeeCCCeEEEcC
Q 010470 445 RSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGK-PLASADKNGVVCVWT 510 (510)
Q Consensus 445 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd 510 (510)
.+.|||||.+|++|+.||.+.+||.++-+.+..++.|..++..+.|+|... .+|+||.||.|++||
T Consensus 437 ~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 437 QVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 689999999999999999999999999999999999999999999999865 789999999999997
No 11
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-42 Score=294.85 Aligned_cols=291 Identities=25% Similarity=0.442 Sum_probs=273.6
Q ss_pred CccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEE
Q 010470 214 PSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYV 293 (510)
Q Consensus 214 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 293 (510)
++...+.+.+|..+|+.+-|+|+-..+++++.|++|++||..++++...+.+|...+.+++|+..|+++++++.|=.+.+
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence 34677788999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred EEcCC-CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc-eeEEEEcCCCCEEEEecC
Q 010470 294 WDVNS-GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHI 371 (510)
Q Consensus 294 wd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~ 371 (510)
||..+ .+++..+.+|...|.++.|-| .+.++++++.|.+|+.|++.+|.++.++..+.. +..+..+.||.++++++.
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~ 255 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN 255 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC
Confidence 99987 567888899999999999999 689999999999999999999999999999876 899999999999999999
Q ss_pred CCcEEEEECCCCceeeeecccccccEEEEEEcCC---------------CCEEEEEecCCcEEEEEcCCceeeeEeecCC
Q 010470 372 DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRS---------------GNIILTSGRDNLHNLFDIRSLEVCGSLRATG 436 (510)
Q Consensus 372 dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~---------------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 436 (510)
|.+|++|-+.++.+...+..|. .+|.+++|-|. +.++.+++.|++|++||+.++.++.++.+|.
T Consensus 256 dqtl~vW~~~t~~~k~~lR~hE-h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghd 334 (406)
T KOG0295|consen 256 DQTLRVWVVATKQCKAELREHE-HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHD 334 (406)
T ss_pred CceEEEEEeccchhhhhhhccc-cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEeccc
Confidence 9999999999998888888887 88999999762 3589999999999999999999999999999
Q ss_pred CeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 437 NRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 437 ~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+.+.. ++|+|.|+||+++.+|+++++||+.++++..++..|..-|+++.|+.+..+++||+-|-.+++|.
T Consensus 335 nwVr~----~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 335 NWVRG----VAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ceeee----eEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 98877 99999999999999999999999999999999999999999999999999999999999999994
No 12
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.9e-42 Score=287.08 Aligned_cols=270 Identities=25% Similarity=0.409 Sum_probs=244.5
Q ss_pred chHHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCC------c
Q 010470 185 GLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG------S 258 (510)
Q Consensus 185 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~------~ 258 (510)
....+++++.||.+.+|+.-. ....+.++-....|..++|+|.|+++|+||-|+...||++.+. +
T Consensus 66 Dsr~ivSaSqDGklIvWDs~T---------tnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~ 136 (343)
T KOG0286|consen 66 DSRRIVSASQDGKLIVWDSFT---------TNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVR 136 (343)
T ss_pred CcCeEEeeccCCeEEEEEccc---------ccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccce
Confidence 445678889999999998543 3355666667788999999999999999999999999999754 3
Q ss_pred ceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEE
Q 010470 259 LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD 338 (510)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd 338 (510)
..+.+.+|.+.+.++.|.+ +..|++++.|.+..+||+++++.+..|.+|.+.|.++.++|.+++.+++|+.|+..++||
T Consensus 137 v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD 215 (343)
T KOG0286|consen 137 VSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWD 215 (343)
T ss_pred eeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeee
Confidence 4567889999999999987 556999999999999999999999999999999999999998899999999999999999
Q ss_pred CCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccc-cccEEEEEEcCCCCEEEEEecCC
Q 010470 339 LHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS-LAAVTSISLSRSGNIILTSGRDN 416 (510)
Q Consensus 339 ~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~ 416 (510)
++.+.++++|.+| +.|++++|.|+|.-|++|+.|++.++||+|....+..+.... ..+|++++||..|++|++|..|.
T Consensus 216 ~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~ 295 (343)
T KOG0286|consen 216 VRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDF 295 (343)
T ss_pred ccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCC
Confidence 9999999999988 569999999999999999999999999999988887776432 36899999999999999999999
Q ss_pred cEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEe
Q 010470 417 LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWS 468 (510)
Q Consensus 417 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd 468 (510)
.+.+||.-+++.+..+.+|.+.+.+ +..+|||.-+++|+.|..++||.
T Consensus 296 ~c~vWDtlk~e~vg~L~GHeNRvSc----l~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 296 TCNVWDTLKGERVGVLAGHENRVSC----LGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ceeEeeccccceEEEeeccCCeeEE----EEECCCCcEEEecchhHheeecC
Confidence 9999999999999999999998876 99999999999999999999994
No 13
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.8e-41 Score=291.76 Aligned_cols=297 Identities=24% Similarity=0.401 Sum_probs=258.8
Q ss_pred ccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCC---cceecccccccceeEEEEecCCCEEEE
Q 010470 208 FAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG---SLSSTLYGCLGSVLDLAITHDNRSVIA 284 (510)
Q Consensus 208 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~ 284 (510)
.....+|.+..+.+..|.+.|.-+.||++|++||+++.|.+..+|.+... +..+++.+|..+|..+.|+||.+++++
T Consensus 207 c~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLla 286 (519)
T KOG0293|consen 207 CGRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLA 286 (519)
T ss_pred cCcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEe
Confidence 45667899999999999999999999999999999999999999987543 347788999999999999999999999
Q ss_pred EeCCCeEEEEEcCCCCeeEeec-CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec--CceeEEEEcC
Q 010470 285 ASSSNNLYVWDVNSGRVRHTLT-GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH--SNCNALAFSM 361 (510)
Q Consensus 285 ~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~i~~i~~~~ 361 (510)
|+.+..+.+||+.+|...+.+. ++...+.+++|.| ++..+++|+.|++|..||+. |........- ..+.++++++
T Consensus 287 Cg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~ 364 (519)
T KOG0293|consen 287 CGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITY 364 (519)
T ss_pred cCchHheeeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcC
Confidence 9999999999999999888775 3568899999999 89999999999999999996 4444333332 3489999999
Q ss_pred CCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeec
Q 010470 362 DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVAS 441 (510)
Q Consensus 362 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 441 (510)
||+++++.+.|..|++|+..+......+..+ .+|+++++|.+|+++++.-.+..+++||+.....+..+.++.....
T Consensus 365 Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~--~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~f- 441 (519)
T KOG0293|consen 365 DGKYVLLVTVDKKIRLYNREARVDRGLISEE--QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHF- 441 (519)
T ss_pred CCcEEEEEecccceeeechhhhhhhcccccc--CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccce-
Confidence 9999999999999999998766555455544 7999999999999999999999999999998888888877765443
Q ss_pred CceeEEEcC-CCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCC-cEEEeeCCCeEEEcC
Q 010470 442 NWSRSCISP-DESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGK-PLASADKNGVVCVWT 510 (510)
Q Consensus 442 ~~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd 510 (510)
+...||.- +..++++||.|+.|+||+..+|+++..+.||...|++++|+|..+ ++|++|+||+|+||.
T Consensus 442 -iIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 442 -IIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred -EEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 23356654 558999999999999999999999999999999999999999876 789999999999993
No 14
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.3e-41 Score=288.05 Aligned_cols=292 Identities=20% Similarity=0.402 Sum_probs=264.5
Q ss_pred ccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCC
Q 010470 210 ESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSN 289 (510)
Q Consensus 210 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 289 (510)
+-..|.+....+.||.+.|.|+++.|...+|++|+.|++|+|||+.+|++..++.||...|..+++++...|+++++.|+
T Consensus 136 eWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk 215 (460)
T KOG0285|consen 136 EWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDK 215 (460)
T ss_pred cccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCC
Confidence 34466778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEE
Q 010470 290 NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFS 368 (510)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~ 368 (510)
.|+.||++.++.++.+.+|-..|.|++.+| .-..|++|+.|.++++||+++...+..+.+| .+|..+.+.|....+++
T Consensus 216 ~VKCwDLe~nkvIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit 294 (460)
T KOG0285|consen 216 QVKCWDLEYNKVIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVIT 294 (460)
T ss_pred eeEEEechhhhhHHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEE
Confidence 999999999999999999999999999999 7889999999999999999999999999877 45999999998889999
Q ss_pred ecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEE
Q 010470 369 GHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCI 448 (510)
Q Consensus 369 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (510)
|+.|++|++||++.|+....+..|. ..+.+++.+|....|++++.| .|+-|++..+..+..+.++...+.. ++.
T Consensus 295 ~S~D~tvrlWDl~agkt~~tlt~hk-ksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iint----l~~ 368 (460)
T KOG0285|consen 295 GSHDSTVRLWDLRAGKTMITLTHHK-KSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINT----LSV 368 (460)
T ss_pred ecCCceEEEeeeccCceeEeeeccc-ceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeee----eee
Confidence 9999999999999999998888877 899999999999999998877 5889999999998888888776654 665
Q ss_pred cCCCCEEEEEcCCCeEEEEeCCCcceeeccc-----c---cCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 449 SPDESYVAAGSADGSVYIWSISKADIVRTLK-----E---HTAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 449 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~---~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
..|| ++++|+++|.+.+||..+|-....+. + ....|.+.+|...|..|++|..|.+|++|
T Consensus 369 nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ 436 (460)
T KOG0285|consen 369 NSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMY 436 (460)
T ss_pred ccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEE
Confidence 5554 77889999999999999886554442 1 34578999999999999999999999999
No 15
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.6e-41 Score=269.85 Aligned_cols=289 Identities=24% Similarity=0.446 Sum_probs=258.0
Q ss_pred CCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeE
Q 010470 212 TVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNL 291 (510)
Q Consensus 212 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 291 (510)
..|.+..+.+.+|.++|.++.|+-+|+|.++++.|.+|++|++..|.+++++.+|...|..++.+.|+..+++|+.|..|
T Consensus 4 e~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v 83 (307)
T KOG0316|consen 4 ELPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAV 83 (307)
T ss_pred cCcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceE
Confidence 46777888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC--eEeeeeeec-CceeEEEEcCCCCEEEE
Q 010470 292 YVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG--YCVNTIIFH-SNCNALAFSMDGQTIFS 368 (510)
Q Consensus 292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~-~~i~~i~~~~~~~~l~~ 368 (510)
.+||+++|+..+.+.+|.+.|+.+.|+. +...+++|+.|.++++||.++. ++++.+... ..|.++.+. +..|++
T Consensus 84 ~vwDV~TGkv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIva 160 (307)
T KOG0316|consen 84 QVWDVNTGKVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVA 160 (307)
T ss_pred EEEEcccCeeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEe
Confidence 9999999999999999999999999998 8899999999999999999865 456655443 458888774 778999
Q ss_pred ecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEE
Q 010470 369 GHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCI 448 (510)
Q Consensus 369 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (510)
|+.||+++.||++.|.......+ .+|++++|+++++..++++.|+++++.|-.+++.+..+.+|.+.-.. ...++
T Consensus 161 GS~DGtvRtydiR~G~l~sDy~g---~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eyk--ldc~l 235 (307)
T KOG0316|consen 161 GSVDGTVRTYDIRKGTLSSDYFG---HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYK--LDCCL 235 (307)
T ss_pred eccCCcEEEEEeecceeehhhcC---CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceee--eeeee
Confidence 99999999999999987766554 57999999999999999999999999999999999999988776543 33678
Q ss_pred cCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcC-EEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 449 SPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAP-VLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 449 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
+.....+++|+.||.|++||+.....+..+..|... |.+++++|.-.-|+++... .+.+|
T Consensus 236 ~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~-~~~~~ 296 (307)
T KOG0316|consen 236 NQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH-GDLFW 296 (307)
T ss_pred cccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC-ceece
Confidence 888899999999999999999999999999888877 8999999998877777543 34444
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.4e-42 Score=297.97 Aligned_cols=282 Identities=22% Similarity=0.409 Sum_probs=253.9
Q ss_pred cccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe
Q 010470 222 NAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV 301 (510)
Q Consensus 222 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 301 (510)
..-..+|..|.|.|+|+.|++|+..|.+.+|+..+......+..|..+|.++.|++++.++++|+.+|.|++|+.+-..
T Consensus 93 NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn- 171 (464)
T KOG0284|consen 93 NKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN- 171 (464)
T ss_pred cccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-
Confidence 3445689999999999999999999999999987766666778999999999999999999999999999999976444
Q ss_pred eEeecC-CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcCCCCEEEEecCCCcEEEEE
Q 010470 302 RHTLTG-HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWD 379 (510)
Q Consensus 302 ~~~~~~-~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d 379 (510)
++.+.. |...|.+++|+| ++..|++++.||+|+|||....+.-..+.+|+ .|.++.|+|....|++|+.|..|++||
T Consensus 172 Vk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWD 250 (464)
T KOG0284|consen 172 VKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWD 250 (464)
T ss_pred hHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeec
Confidence 444444 559999999999 78899999999999999999888877777765 599999999999999999999999999
Q ss_pred CCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcC-CCCEEEEE
Q 010470 380 IQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP-DESYVAAG 458 (510)
Q Consensus 380 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~ 458 (510)
.+++.++.++..|. ..|..+.|+|++++|++++.|..+++||+++.+.+..+++|...+.. +.|+| ...+|.+|
T Consensus 251 prSg~cl~tlh~HK-ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~----~~WhP~~~~lftsg 325 (464)
T KOG0284|consen 251 PRSGSCLATLHGHK-NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTS----LTWHPLNESLFTSG 325 (464)
T ss_pred CCCcchhhhhhhcc-ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhhee----eccccccccceeec
Confidence 99999999999888 89999999999999999999999999999999989999988877765 88999 56788999
Q ss_pred cCCCeEEEEeCCCcceeecc-cccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 459 SADGSVYIWSISKADIVRTL-KEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 459 ~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+.||.|..|.+...+++..+ .+|...|++++|+|-|.+|++|+.|.++++|.
T Consensus 326 g~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 326 GSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred cCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 99999999999876766665 45999999999999999999999999999994
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.1e-40 Score=267.73 Aligned_cols=287 Identities=18% Similarity=0.338 Sum_probs=250.3
Q ss_pred HhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc--eecccc
Q 010470 188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL--SSTLYG 265 (510)
Q Consensus 188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~ 265 (510)
.+++.+.|.+||+|.... ..|..++.-..+.|+.+.+.|+++.||+++. ..|++||++++++ +.++.+
T Consensus 12 iLvsA~YDhTIRfWqa~t---------G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~ 81 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALT---------GICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEG 81 (311)
T ss_pred EEEeccCcceeeeeehhc---------CeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEec
Confidence 366788999999999554 5688999988999999999999999999885 5799999988764 888999
Q ss_pred cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEe
Q 010470 266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV 345 (510)
Q Consensus 266 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 345 (510)
|...|+++.|..+|+.+++|+.||+++|||++...+.+.+. |..+|+++..+| +...|++|..+|.|++||+....+.
T Consensus 82 h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 82 HTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCT 159 (311)
T ss_pred cCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccc
Confidence 99999999999999999999999999999999877666666 779999999999 8889999999999999999988777
Q ss_pred eeeeec--CceeEEEEcCCCCEEEEecCCCcEEEEECCCC------ceeeeecccccccEEEEEEcCCCCEEEEEecCCc
Q 010470 346 NTIIFH--SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTG------KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNL 417 (510)
Q Consensus 346 ~~~~~~--~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~ 417 (510)
..+... ..+.++.+.|||.+++.+...|+.++|++-.. .++.++..|. +.+..+.+||++++|++++.|.+
T Consensus 160 ~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~-~~il~C~lSPd~k~lat~ssdkt 238 (311)
T KOG0315|consen 160 HELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHN-GHILRCLLSPDVKYLATCSSDKT 238 (311)
T ss_pred cccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheeccc-ceEEEEEECCCCcEEEeecCCce
Confidence 776554 45899999999999999999999999998654 3555666776 88999999999999999999999
Q ss_pred EEEEEcCCc-eeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEe
Q 010470 418 HNLFDIRSL-EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWS 491 (510)
Q Consensus 418 i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 491 (510)
++||+..+. +....+.++...+ ..++||.||.||++|+.|+.+++|++..++.+..+.+|..+..+++..
T Consensus 239 v~iwn~~~~~kle~~l~gh~rWv----Wdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 239 VKIWNTDDFFKLELVLTGHQRWV----WDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EEEEecCCceeeEEEeecCCceE----EeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 999999987 4444555554443 348899999999999999999999999999999999998887777764
No 18
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.8e-41 Score=315.39 Aligned_cols=285 Identities=23% Similarity=0.423 Sum_probs=253.5
Q ss_pred ccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc-------------------------------
Q 010470 210 ESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS------------------------------- 258 (510)
Q Consensus 210 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~------------------------------- 258 (510)
...+|..|..++..-...++|..|++|+.+||.|..|..|++|.+...+
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~ 442 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSG 442 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCc
Confidence 4567888888888878899999999999999999999999999986321
Q ss_pred ceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEE
Q 010470 259 LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD 338 (510)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd 338 (510)
...++.+|.++|..+.|+|+.++|++++.|+++++|.+.+..++-.+.+|..+|+++.|+| .+.+|+|+|.|++-++|.
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs 521 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWS 521 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeee
Confidence 1234679999999999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred CCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCc
Q 010470 339 LHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNL 417 (510)
Q Consensus 339 ~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~ 417 (510)
.....+.+.+.+| +.+.|+.|+|+..++++|+.|.+|++||+.+|..++.|.+|. ++|.+++|||+|++|++|+.||.
T Consensus 522 ~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~-~~V~al~~Sp~Gr~LaSg~ed~~ 600 (707)
T KOG0263|consen 522 TDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHK-GPVTALAFSPCGRYLASGDEDGL 600 (707)
T ss_pred cccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCC-CceEEEEEcCCCceEeecccCCc
Confidence 9999999999887 569999999999999999999999999999999999999987 99999999999999999999999
Q ss_pred EEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc------------------------
Q 010470 418 HNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD------------------------ 473 (510)
Q Consensus 418 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~------------------------ 473 (510)
|.+||+.++..+..+.+|.+.+.+ +.||.+|..||+|+.|.+|++||+..-.
T Consensus 601 I~iWDl~~~~~v~~l~~Ht~ti~S----lsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (707)
T KOG0263|consen 601 IKIWDLANGSLVKQLKGHTGTIYS----LSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSL 676 (707)
T ss_pred EEEEEcCCCcchhhhhcccCceeE----EEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcc
Confidence 999999999999999999666555 9999999999999999999999975421
Q ss_pred eeecccccCcCEEEEEEeCCCCcEEEe
Q 010470 474 IVRTLKEHTAPVLSCSWSGLGKPLASA 500 (510)
Q Consensus 474 ~~~~~~~~~~~v~~~~~~~~~~~l~s~ 500 (510)
.+.++.....+|.++.|......|++|
T Consensus 677 llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 677 LLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred eeeeeeecCceEEEEEEeccceeEEec
Confidence 233344455688888888765444444
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.9e-40 Score=291.09 Aligned_cols=292 Identities=21% Similarity=0.362 Sum_probs=258.0
Q ss_pred ccCCCccceeeccccccceEEEEEecCCC-EEEEeeCCCeEEEEeCCCC--ccee--cc----------cccccceeEEE
Q 010470 210 ESTVPSTCKHKINAHEGGCASILFEYNSA-RLISGGQDKSIKLWDTNTG--SLSS--TL----------YGCLGSVLDLA 274 (510)
Q Consensus 210 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~--~~~~--~~----------~~~~~~v~~~~ 274 (510)
...+|......+. |..+|.+++|+|-.. .+++|+.|-..++|++... .... .+ ......|++++
T Consensus 164 ~~~I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~ 242 (524)
T KOG0273|consen 164 GVEIPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLD 242 (524)
T ss_pred cccccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEE
Confidence 4456666667777 999999999999766 8999999999999998641 1110 01 12246899999
Q ss_pred EecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCce
Q 010470 275 ITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNC 354 (510)
Q Consensus 275 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i 354 (510)
|+.+|..|++|+.||.+++|+. +|..+.++..|.++|.++.|+. .+++|++++.||++.+||..++...+.+..++.+
T Consensus 243 Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk-~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~ 320 (524)
T KOG0273|consen 243 WNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNK-KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP 320 (524)
T ss_pred ecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcC-CCCEEEeccCCccEEEEeccCceEEEeeeeccCC
Confidence 9999999999999999999995 5888899999999999999998 8999999999999999999999999999998876
Q ss_pred -eEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEee
Q 010470 355 -NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLR 433 (510)
Q Consensus 355 -~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 433 (510)
..+.|- +...|++++.||.|+++.+....++.++.+|+ ++|.++.|+|.|.+|++++.|++++||..........+.
T Consensus 321 ~lDVdW~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~-g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~ 398 (524)
T KOG0273|consen 321 ALDVDWQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHH-GEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ 398 (524)
T ss_pred ccceEEe-cCceEeecCCCceEEEEEecCCCcceeeeccc-CceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh
Confidence 778886 55678899999999999999999999999987 999999999999999999999999999998888888888
Q ss_pred cCCCeeecCceeEEEcCCC---------CEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCC
Q 010470 434 ATGNRVASNWSRSCISPDE---------SYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNG 504 (510)
Q Consensus 434 ~~~~~~~~~~~~~~~s~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 504 (510)
.|...+.. +.|+|.| ..+++++.|++|++||+..+.++..|..|..+|.+++|+|+|.++++|+.||
T Consensus 399 ~Hskei~t----~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg 474 (524)
T KOG0273|consen 399 AHSKEIYT----IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDG 474 (524)
T ss_pred hhccceee----EeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCC
Confidence 88776665 6777764 4689999999999999999999999999999999999999999999999999
Q ss_pred eEEEcC
Q 010470 505 VVCVWT 510 (510)
Q Consensus 505 ~i~iwd 510 (510)
.|.+|+
T Consensus 475 ~V~iws 480 (524)
T KOG0273|consen 475 CVHIWS 480 (524)
T ss_pred eeEecc
Confidence 999996
No 20
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-39 Score=290.25 Aligned_cols=307 Identities=23% Similarity=0.391 Sum_probs=251.9
Q ss_pred hhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc---c
Q 010470 189 LAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY---G 265 (510)
Q Consensus 189 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~ 265 (510)
+++++.|+.+.+++ -.|++...+++.|...|.|+.|+|||.++++++.||.|.+||-.+|+.+..+. +
T Consensus 163 i~T~sdDn~v~ffe---------GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~a 233 (603)
T KOG0318|consen 163 IATGSDDNTVAFFE---------GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDA 233 (603)
T ss_pred EEeccCCCeEEEee---------CCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCC
Confidence 45666666666554 25788899999999999999999999999999999999999999999988887 8
Q ss_pred cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeE------------------------------------------
Q 010470 266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH------------------------------------------ 303 (510)
Q Consensus 266 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~------------------------------------------ 303 (510)
|.+.|.+++|+||++.+++++.|.+++|||+.+++++.
T Consensus 234 HkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~ 313 (603)
T KOG0318|consen 234 HKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVL 313 (603)
T ss_pred ccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChh
Confidence 99999999999999999999999999999998764333
Q ss_pred -eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE-------------------------------eee----
Q 010470 304 -TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC-------------------------------VNT---- 347 (510)
Q Consensus 304 -~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------------------------------~~~---- 347 (510)
.+.+|...|+++..+| ++.+|++|+.||.|.-||..+|.. ++.
T Consensus 314 ~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~ 392 (603)
T KOG0318|consen 314 KVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLK 392 (603)
T ss_pred heecccccceeEEEEcC-CCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecc
Confidence 3568999999999999 789999999999999999754420 000
Q ss_pred --------------------------------------ee---------ecCceeEEEEcCCCCEEEEecCCCcEEEEEC
Q 010470 348 --------------------------------------II---------FHSNCNALAFSMDGQTIFSGHIDGNLRLWDI 380 (510)
Q Consensus 348 --------------------------------------~~---------~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~ 380 (510)
+. ....+.+++++|++..+++|+.||+|++|.+
T Consensus 393 ~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl 472 (603)
T KOG0318|consen 393 DNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSL 472 (603)
T ss_pred cCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEe
Confidence 00 0012467889999999999999999999999
Q ss_pred CCCceeee-ecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeE-eecCCCeeecCceeEEEcCCCCEEEEE
Q 010470 381 QTGKLLSE-VAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGS-LRATGNRVASNWSRSCISPDESYVAAG 458 (510)
Q Consensus 381 ~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~~ 458 (510)
..+..... ....+.++|++++||||+.+|+++...+.+.+||..+.+.... +..|... +.+++|+|+..++|+|
T Consensus 473 ~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtak----I~~~aWsP~n~~vATG 548 (603)
T KOG0318|consen 473 SGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAK----INCVAWSPNNKLVATG 548 (603)
T ss_pred cCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeee----EEEEEeCCCceEEEec
Confidence 76553322 2233349999999999999999999999999999998776322 2224444 4559999999999999
Q ss_pred cCCCeEEEEeCCCcc-eeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 459 SADGSVYIWSISKAD-IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 459 ~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+-|-.|.||++.... .+.....|...|+.+.|-. ...|++.|.|..|++|+
T Consensus 549 SlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wld-e~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 549 SLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLD-ESTVVSSGQDANIKVWN 600 (603)
T ss_pred cccceEEEEEccChhhheEeccccccCceeEEEec-CceEEeccCcceeEEec
Confidence 999999999998743 3444456998999999975 45799999999999996
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.3e-40 Score=288.58 Aligned_cols=314 Identities=23% Similarity=0.397 Sum_probs=270.0
Q ss_pred HhhhhcCCceEEeccccccc-ccccCCCccceeecccc----ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceec
Q 010470 188 KLAKQQVDGVVRRSEEGAEF-FAESTVPSTCKHKINAH----EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSST 262 (510)
Q Consensus 188 ~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h----~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 262 (510)
.++.++.+-..+.|...... ........+....+-++ +..|++++|+.+|..||+|+.||.++||+.. |..+.+
T Consensus 193 llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~t 271 (524)
T KOG0273|consen 193 LLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLIST 271 (524)
T ss_pred hhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhh
Confidence 55666677777777643210 01111111111112223 3479999999999999999999999999986 777889
Q ss_pred ccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 010470 263 LYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG 342 (510)
Q Consensus 263 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~ 342 (510)
+..|.++|.++.|+..|+||++++.|+++.+||..++...+.+..|..+-..+.|- +..-|++++.||.|+|+-+...
T Consensus 272 l~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~ 349 (524)
T KOG0273|consen 272 LGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGED 349 (524)
T ss_pred hhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe--cCceEeecCCCceEEEEEecCC
Confidence 99999999999999999999999999999999999999999999998887788886 4678999999999999999999
Q ss_pred eEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCC---------CEEEEE
Q 010470 343 YCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSG---------NIILTS 412 (510)
Q Consensus 343 ~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~---------~~l~~~ 412 (510)
.++.++.+| ..|+++.|+|.|..|++++.|++++||..........+..|. ..|..+.|+|.| ..++++
T Consensus 350 ~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hs-kei~t~~wsp~g~v~~n~~~~~~l~sa 428 (524)
T KOG0273|consen 350 RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHS-KEIYTIKWSPTGPVTSNPNMNLMLASA 428 (524)
T ss_pred CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhc-cceeeEeecCCCCccCCCcCCceEEEe
Confidence 999999877 459999999999999999999999999998888899999887 889999999965 368999
Q ss_pred ecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeC
Q 010470 413 GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 492 (510)
Q Consensus 413 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 492 (510)
+.|++|++||+..+.+++.|..|..++.. ++|+|+|+|+++|+.||.|.+|++++++.++.+.+ .+.|..++|+.
T Consensus 429 s~dstV~lwdv~~gv~i~~f~kH~~pVys----vafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~ 503 (524)
T KOG0273|consen 429 SFDSTVKLWDVESGVPIHTLMKHQEPVYS----VAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNA 503 (524)
T ss_pred ecCCeEEEEEccCCceeEeeccCCCceEE----EEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcC
Confidence 99999999999999999999888888876 99999999999999999999999999999999885 45699999999
Q ss_pred CCCcEEEeeCCCeEEEcC
Q 010470 493 LGKPLASADKNGVVCVWT 510 (510)
Q Consensus 493 ~~~~l~s~~~dg~i~iwd 510 (510)
+|.+|..+-.||.+++-|
T Consensus 504 ~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 504 AGDKLGACASDGSVCVLD 521 (524)
T ss_pred CCCEEEEEecCCCceEEE
Confidence 999999999999988753
No 22
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.1e-40 Score=271.01 Aligned_cols=277 Identities=24% Similarity=0.370 Sum_probs=235.0
Q ss_pred hHHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccc
Q 010470 186 LEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYG 265 (510)
Q Consensus 186 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 265 (510)
.+.+...+.|..+..|..... ...-..+.+.|+||...|..+..++||++.++++.|+.+++||+.+++....|.+
T Consensus 28 ~~~l~sasrDk~ii~W~L~~d----d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~G 103 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSD----DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVG 103 (315)
T ss_pred CceEEEcccceEEEEEEeccC----ccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEe
Confidence 344566778888888886553 2333457889999999999999999999999999999999999999999999999
Q ss_pred cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCC--CCceEEEEEecCC-CCEEEEEeCCCcEEEEECCCC
Q 010470 266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGH--TDKVCAVDVSKIS-SRHVVSAAYDRTLKVWDLHKG 342 (510)
Q Consensus 266 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~-~~~l~s~~~dg~i~iwd~~~~ 342 (510)
|...|.+++|+||++.+++|+.|.+|.+|+.. +.+..++..+ .+.|.|+.|+|.. ..+|++++.|++|++||+++-
T Consensus 104 H~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~ 182 (315)
T KOG0279|consen 104 HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC 182 (315)
T ss_pred cCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc
Confidence 99999999999999999999999999999976 4455555433 7899999999953 779999999999999999998
Q ss_pred eEeeeeeecCc-eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEE
Q 010470 343 YCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLF 421 (510)
Q Consensus 343 ~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~ 421 (510)
+....+.++.. ++.++++|||..+++|+.||.+.+||++.++.+..+... ..|.+++|+|+...|+.+. +..|+||
T Consensus 183 ~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~--~~v~sl~fspnrywL~~at-~~sIkIw 259 (315)
T KOG0279|consen 183 QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAF--DIVNSLCFSPNRYWLCAAT-ATSIKIW 259 (315)
T ss_pred chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCC--CeEeeEEecCCceeEeecc-CCceEEE
Confidence 88888887754 899999999999999999999999999999998877766 7999999999876666554 4569999
Q ss_pred EcCCceeeeEeecCCCee-----ecCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470 422 DIRSLEVCGSLRATGNRV-----ASNWSRSCISPDESYVAAGSADGSVYIWSIS 470 (510)
Q Consensus 422 d~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 470 (510)
|+.+...+..+....... ......++|++||..|++|..|+.|++|.+.
T Consensus 260 dl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 260 DLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred eccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 999988877765433222 1122447899999999999999999999864
No 23
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4.5e-39 Score=296.73 Aligned_cols=286 Identities=36% Similarity=0.642 Sum_probs=260.1
Q ss_pred eeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 010470 219 HKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS 298 (510)
Q Consensus 219 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 298 (510)
.++.+|.++|++++|+|++++|++++.||.|.+|++.++.....+..|...+..+.|+|+++++++++.+|.|++|++.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 46779999999999999999999999999999999998888888889999999999999999999999999999999998
Q ss_pred CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEE
Q 010470 299 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRL 377 (510)
Q Consensus 299 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i 377 (510)
++....+..|...+.++.|+| ++.++++++.+|.|.+||+.++.....+..+ ..+.+++|+|++.++++++.+|.|++
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 161 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161 (289)
T ss_pred ccceEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence 888888999999999999999 5778888888999999999988888887744 46999999999999999988999999
Q ss_pred EECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEE
Q 010470 378 WDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAA 457 (510)
Q Consensus 378 ~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 457 (510)
||+++++....+..+. ..+.++.|+|+++.+++++.++.+.+||++++.....+..+... +..++|+|++.++++
T Consensus 162 ~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~----i~~~~~~~~~~~~~~ 236 (289)
T cd00200 162 WDLRTGKCVATLTGHT-GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENG----VNSVAFSPDGYLLAS 236 (289)
T ss_pred EEccccccceeEecCc-cccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCc----eEEEEEcCCCcEEEE
Confidence 9999888888887665 78999999999999999999999999999988887777555543 344899999999999
Q ss_pred EcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 458 GSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 458 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
++.||.|++|++.++.....+..|...|.+++|+|++++|++++.||.|++|+
T Consensus 237 ~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 98899999999999999999989999999999999999999999999999997
No 24
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.8e-39 Score=311.94 Aligned_cols=291 Identities=30% Similarity=0.513 Sum_probs=263.9
Q ss_pred eeecccc-ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc--ceecccccccceeEEEEecCCCEEEEEeCCCeEEEE
Q 010470 218 KHKINAH-EGGCASILFEYNSARLISGGQDKSIKLWDTNTGS--LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVW 294 (510)
Q Consensus 218 ~~~~~~h-~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 294 (510)
...+.+| ...|.|+.|+++|+.+++++.|+.+++|+..+++ ....+.+|...|.+++|+|++.++++++.|++|+||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 5556555 7789999999999999999999999999998777 777788999999999999999999999999999999
Q ss_pred Ec-CCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcCCCCEEEEecCC
Q 010470 295 DV-NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHID 372 (510)
Q Consensus 295 d~-~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~d 372 (510)
|+ ..+..++++.+|...|++++|+| .++++++|+.|++|++||+++++++..+..|. .|++++|+++|++|++++.|
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 99 55589999999999999999999 56999999999999999999999999999886 59999999999999999999
Q ss_pred CcEEEEECCCCc--eeeeecccccc-cEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEc
Q 010470 373 GNLRLWDIQTGK--LLSEVAAHSLA-AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCIS 449 (510)
Q Consensus 373 g~i~i~d~~~~~--~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s 449 (510)
|.|++||+.++. +...+..+... +++++.|+|++.++++++.|+.+++||+..+.....+..+.... ..+.....+
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~-~~~~~~~~~ 388 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLV-RCIFSPTLS 388 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcc-eeEeccccc
Confidence 999999999998 55666666544 79999999999999999999999999999999999988887763 223334568
Q ss_pred CCCCEEEEEcCCCeEEEEeCCCcceeeccccc-CcCEEEEEEeCCCCcEEEee--CCCeEEEcC
Q 010470 450 PDESYVAAGSADGSVYIWSISKADIVRTLKEH-TAPVLSCSWSGLGKPLASAD--KNGVVCVWT 510 (510)
Q Consensus 450 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~--~dg~i~iwd 510 (510)
+.+.++++|+.|+.|++|++.++..+..+.+| ...+..++|+|..+++++++ .|+.+++|.
T Consensus 389 ~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 389 TGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred CCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 89999999999999999999999999999999 89999999999999999988 789999994
No 25
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=2.9e-38 Score=275.69 Aligned_cols=391 Identities=19% Similarity=0.307 Sum_probs=302.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH---HHHHhhhH----
Q 010470 94 TSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKML---VDR---WMLQKMQD---- 163 (510)
Q Consensus 94 ~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~---- 163 (510)
-+|+++|+.+++|+++..++.+++++.+.+|.+|+++.++.+..+....-...++.... .+. .+.+.+..
T Consensus 88 F~LRqqL~ttrQELShaLYqhDAAcrViaRL~kE~~eareaLa~~~~qa~a~~peav~~~~~~s~~~va~ge~~d~~g~s 167 (506)
T KOG0289|consen 88 FTLRQQLQTTRQELSHALYQHDAACRVIARLTKERDEAREALAKLSPQAGAIVPEAVPSLAQSSVVGVAAGESEDQPGLS 167 (506)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccccccchhhhhcCCccccccCC
Confidence 34888899999999999999999999999999999999998887776543332111000 000 00000000
Q ss_pred HHHHHHHHHHHHHHHHHhhhc---chHHhhhhcCCceEEecccccccccccCCCccceeeccc-------cccceEEEEE
Q 010470 164 AERLNEANALYEDMIDRLKAS---GLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINA-------HEGGCASILF 233 (510)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~~~~ 233 (510)
.+..+........+....+.. ..+.+++. |. ..+...... ...+++++..
T Consensus 168 ~~i~~~l~~~aq~ls~~rKkrg~k~p~~la~~--d~------------------~~~~~q~ash~gLH~t~~pgi~ald~ 227 (506)
T KOG0289|consen 168 PEIIQKLEDKAQVLSQERKKRGKKLPEKLATT--DE------------------LSCLLQVASHTGLHSTSTPGITALDI 227 (506)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccCCcccccH--HH------------------HHHHHhcCCCcceeccCCCCeeEEee
Confidence 000111111111111111100 00000000 00 001111111 2236888888
Q ss_pred ecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceE
Q 010470 234 EYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVC 313 (510)
Q Consensus 234 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~ 313 (510)
.|....+.+|+.|..+.++|..+++.+..+.||.-.|+.+.|+|+...+++++.|..|+||.............|..+|+
T Consensus 228 ~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~ 307 (506)
T KOG0289|consen 228 IPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVT 307 (506)
T ss_pred cCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccce
Confidence 88778999999999999999999999999999999999999999999999999999999999988887778888999999
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC---ceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeec
Q 010470 314 AVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS---NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVA 390 (510)
Q Consensus 314 ~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 390 (510)
.+..+| .+.||++++.||+..+.|++++.++....... .+++.+|+|||..|.+|..||.|+|||+.++..+..|.
T Consensus 308 ~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp 386 (506)
T KOG0289|consen 308 GLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP 386 (506)
T ss_pred eeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC
Confidence 999999 89999999999999999999999888877642 38999999999999999999999999999999999999
Q ss_pred ccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470 391 AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS 470 (510)
Q Consensus 391 ~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 470 (510)
+|. ++|..|+|+.+|.+|++++.|+.|++||+|+.+...++...... .+..++|.+.|.+|+.++.|=.|++++-.
T Consensus 387 ght-~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~---~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~ 462 (506)
T KOG0289|consen 387 GHT-GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK---EVNSLSFDQSGTYLGIAGSDLQVYICKKK 462 (506)
T ss_pred CCC-CceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc---cceeEEEcCCCCeEEeecceeEEEEEecc
Confidence 977 99999999999999999999999999999998887777655543 23458999999999999887667776633
Q ss_pred --CcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 471 --KADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 471 --~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
+...+..+..|.+..+++.|..+..+++++|.|..++++
T Consensus 463 ~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 463 TKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred cccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 467778888899999999999999999999999998886
No 26
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.3e-38 Score=270.60 Aligned_cols=287 Identities=18% Similarity=0.302 Sum_probs=248.8
Q ss_pred ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470 217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV 296 (510)
Q Consensus 217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 296 (510)
...+|..|.++|.+++.+|+.++++|||.|..-.+|+..++.....+.+|...|+++.|+.+|.+|++|+.+|.|+||..
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcE
Q 010470 297 NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNL 375 (510)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i 375 (510)
.++.....+....+.+.=+.|+| ...+|+.|+.||.+.+|.+.++...+.+.++ .++++-.|.|+|+.+++|..||+|
T Consensus 136 stg~~~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti 214 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTI 214 (399)
T ss_pred ccCceEEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceE
Confidence 99999888876777888899999 8999999999999999999987777777766 569999999999999999999999
Q ss_pred EEEECCCCceeeeeccccccc-----------------------------------------------------EEEEEE
Q 010470 376 RLWDIQTGKLLSEVAAHSLAA-----------------------------------------------------VTSISL 402 (510)
Q Consensus 376 ~i~d~~~~~~~~~~~~~~~~~-----------------------------------------------------i~~i~~ 402 (510)
++||+.++.++..+....... |.++.+
T Consensus 215 ~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ 294 (399)
T KOG0296|consen 215 IVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPS 294 (399)
T ss_pred EEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccc
Confidence 999999998887765211011 111222
Q ss_pred cCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccC
Q 010470 403 SRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHT 482 (510)
Q Consensus 403 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 482 (510)
+..=.+.++|+-||+|.|||+......+.+..... +..+.|-+ ..+|++++.||.|+.||.++|.++.++.+|.
T Consensus 295 ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~-----V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~ 368 (399)
T KOG0296|consen 295 SSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDG-----VTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQ 368 (399)
T ss_pred ccccchhhcccccceEEEEecccchhheeccCCCc-----eEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCc
Confidence 22234567888899999999887776666554443 33478888 7899999999999999999999999999999
Q ss_pred cCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 483 APVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 483 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
.+|.+++++|+++.++|+|.|++.+||+
T Consensus 369 ~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 369 MGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred hheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 9999999999999999999999999984
No 27
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=7.8e-37 Score=317.25 Aligned_cols=283 Identities=19% Similarity=0.335 Sum_probs=239.5
Q ss_pred ccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCC----c----ceecccccccceeEEEEecC-CCEEEEEeCCCeE
Q 010470 221 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG----S----LSSTLYGCLGSVLDLAITHD-NRSVIAASSSNNL 291 (510)
Q Consensus 221 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~----~----~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i 291 (510)
+.+|.+.|.+++|+|+|++|++|+.|+.|+||+..+. . ....+ .+...+.+++|+|. +.+|++++.||.|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997542 1 11222 23567899999874 7899999999999
Q ss_pred EEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEc-CCCCEEEEec
Q 010470 292 YVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFS-MDGQTIFSGH 370 (510)
Q Consensus 292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~-~~~~~l~~~~ 370 (510)
++||+.+++.+..+.+|.+.|++++|+|.++.+|++|+.||.|++||++++.++..+..+..+.++.|+ ++|.+|++|+
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs 637 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGS 637 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEe
Confidence 999999999999999999999999999867889999999999999999999998888877789999995 5799999999
Q ss_pred CCCcEEEEECCCCc-eeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCc------eeeeEeecCCCeeecCc
Q 010470 371 IDGNLRLWDIQTGK-LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL------EVCGSLRATGNRVASNW 443 (510)
Q Consensus 371 ~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~~~~~~ 443 (510)
.||.|++||+++++ ++..+..|. ..|.++.|. ++.+|++++.|+.|++||++.. ..+..+.++...+.
T Consensus 638 ~dg~I~iwD~~~~~~~~~~~~~h~-~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~--- 712 (793)
T PLN00181 638 ADHKVYYYDLRNPKLPLCTMIGHS-KTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKN--- 712 (793)
T ss_pred CCCeEEEEECCCCCccceEecCCC-CCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCee---
Confidence 99999999998876 455666665 889999997 6889999999999999999743 45566666655443
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecc-------------cccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 444 SRSCISPDESYVAAGSADGSVYIWSISKADIVRTL-------------KEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 444 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
.++|+|++.+|++|+.||.|++|+.....++..+ ..|...|.+++|+|++..|++|+.||.|+||+
T Consensus 713 -~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 713 -FVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred -EEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 3889999999999999999999997655433221 23456799999999999999999999999996
No 28
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.2e-38 Score=291.89 Aligned_cols=289 Identities=21% Similarity=0.370 Sum_probs=257.2
Q ss_pred ccceeeccccccceEEEEEecCCCEEEEeeCC-CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEE
Q 010470 215 STCKHKINAHEGGCASILFEYNSARLISGGQD-KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYV 293 (510)
Q Consensus 215 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 293 (510)
..+++.+.--..+|..++|+..|+.||.|+.. |.+-||++.+...+....+|...+++++++|||+++++|+.||.|+|
T Consensus 297 f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKv 376 (893)
T KOG0291|consen 297 FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKV 376 (893)
T ss_pred ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEE
Confidence 45778888888899999999999999998865 89999999999998889999999999999999999999999999999
Q ss_pred EEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc--eeEEEEcCCCCEEEEecC
Q 010470 294 WDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFSGHI 371 (510)
Q Consensus 294 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~ 371 (510)
||..++-|..+|..|+..|+.+.|+. .++.+++++-||+|+.||+...+..+++..+.+ ..|++..|.|..+++|+.
T Consensus 377 Wn~~SgfC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~ 455 (893)
T KOG0291|consen 377 WNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQ 455 (893)
T ss_pred EeccCceEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeecc
Confidence 99999999999999999999999998 899999999999999999999999999988866 689999999999999988
Q ss_pred CC-cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCc-eeeeEeecCCCeeecCceeEEEc
Q 010470 372 DG-NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL-EVCGSLRATGNRVASNWSRSCIS 449 (510)
Q Consensus 372 dg-~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s 449 (510)
|. .|++|++.+|+.+..+.+|. ++|.+++|+|.|..|++++.|.+|++||+-.. ..+.++.. ...+..++|+
T Consensus 456 d~F~IfvWS~qTGqllDiLsGHE-gPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i-----~sdvl~vsfr 529 (893)
T KOG0291|consen 456 DSFEIFVWSVQTGQLLDILSGHE-GPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI-----RSDVLAVSFR 529 (893)
T ss_pred ceEEEEEEEeecCeeeehhcCCC-CcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee-----ccceeEEEEc
Confidence 76 49999999999999999998 99999999999999999999999999998643 23333333 3334458999
Q ss_pred CCCCEEEEEcCCCeEEEEeCCCcceeecccc--------------------cCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 450 PDESYVAAGSADGSVYIWSISKADIVRTLKE--------------------HTAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 450 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------------~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
|+|+.|++++-||.|.+||+..+..+..+.+ .....+.+++++||..+++||....|++|
T Consensus 530 PdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY 609 (893)
T KOG0291|consen 530 PDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIY 609 (893)
T ss_pred CCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEE
Confidence 9999999999999999999887665544321 23468999999999999999999999998
Q ss_pred C
Q 010470 510 T 510 (510)
Q Consensus 510 d 510 (510)
+
T Consensus 610 ~ 610 (893)
T KOG0291|consen 610 D 610 (893)
T ss_pred E
Confidence 6
No 29
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5e-37 Score=285.40 Aligned_cols=308 Identities=24% Similarity=0.400 Sum_probs=252.2
Q ss_pred eEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc--eecccccccceeEEE
Q 010470 197 VVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL--SSTLYGCLGSVLDLA 274 (510)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~ 274 (510)
.+.+|......- ....|+....++.||...|+++.|+.|.++|++||.|-++++|+++..+. ...+.+|.++|.++-
T Consensus 118 ~lqiw~~P~~~~-~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~Vvacf 196 (893)
T KOG0291|consen 118 LLQIWHAPGEIK-NEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACF 196 (893)
T ss_pred eeEEEecCcchh-cccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEE
Confidence 445565443222 25578888899999999999999999999999999999999999987665 566789999999999
Q ss_pred EecCCCEEEEEeCCCeEEEEEcCC-----------------------CCe-----------eEeecCCCCceEEEEEecC
Q 010470 275 ITHDNRSVIAASSSNNLYVWDVNS-----------------------GRV-----------RHTLTGHTDKVCAVDVSKI 320 (510)
Q Consensus 275 ~~~~~~~l~~~~~d~~i~iwd~~~-----------------------~~~-----------~~~~~~~~~~v~~i~~~~~ 320 (510)
|..+...+++.+.||.+.+|.... ++. .+-+......|++.+|++
T Consensus 197 F~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~- 275 (893)
T KOG0291|consen 197 FGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHK- 275 (893)
T ss_pred eccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccC-
Confidence 999999999999999999998761 100 000111124455555554
Q ss_pred CCCEEEEEeCC-------------------------------------------CcEEEEECCCCeEeeeeeec-CceeE
Q 010470 321 SSRHVVSAAYD-------------------------------------------RTLKVWDLHKGYCVNTIIFH-SNCNA 356 (510)
Q Consensus 321 ~~~~l~s~~~d-------------------------------------------g~i~iwd~~~~~~~~~~~~~-~~i~~ 356 (510)
..+.+++|-.. |.+.||+..+...+....+| ..+++
T Consensus 276 ~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~ 355 (893)
T KOG0291|consen 276 GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITS 355 (893)
T ss_pred CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceee
Confidence 44444444333 45556666555555555555 45999
Q ss_pred EEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCC
Q 010470 357 LAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATG 436 (510)
Q Consensus 357 i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 436 (510)
++++|||+++++|+.||.|+|||..+|-+..+|..|. +.|+.+.|+..|+.+++++-||+|+.||+.......++..+.
T Consensus 356 l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHt-s~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~ 434 (893)
T KOG0291|consen 356 LAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHT-SGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPE 434 (893)
T ss_pred EEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCC-CceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCC
Confidence 9999999999999999999999999999999999998 999999999999999999999999999999988888887655
Q ss_pred CeeecCceeEEEcCCCCEEEEEcCCC-eEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 437 NRVASNWSRSCISPDESYVAAGSADG-SVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 437 ~~~~~~~~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
.. .+.+++..|.|..+++|+.|. .|+||++.+|+.+..+.+|.+||.+++|+|+|..|++++.|.+|++||
T Consensus 435 p~---QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 435 PI---QFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD 506 (893)
T ss_pred ce---eeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence 43 345788999999999999886 599999999999999999999999999999999999999999999997
No 30
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.5e-36 Score=249.43 Aligned_cols=282 Identities=20% Similarity=0.381 Sum_probs=233.3
Q ss_pred ceeeccccccceEEEEEecC-CCEEEEeeCCCeEEEEeCCCCc---ceecc-cccccceeEEEEecCCCEEEEEeCCCeE
Q 010470 217 CKHKINAHEGGCASILFEYN-SARLISGGQDKSIKLWDTNTGS---LSSTL-YGCLGSVLDLAITHDNRSVIAASSSNNL 291 (510)
Q Consensus 217 ~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i 291 (510)
..+++.+|.+.|..++|+|- |..||+||.|+.|++|+...+. +...+ .+|...|.+++|+|.|++|++++.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 56788999999999999998 8899999999999999998532 22223 3799999999999999999999999999
Q ss_pred EEEEcCCC--CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC---eEeeeeeec-CceeEEEEcCCCCE
Q 010470 292 YVWDVNSG--RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG---YCVNTIIFH-SNCNALAFSMDGQT 365 (510)
Q Consensus 292 ~iwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~-~~i~~i~~~~~~~~ 365 (510)
.||.-..+ +++.++.||.+.|.|++|++ ++++|++++.|.+|-||.+..+ .+...+..| ..|..+.|+|....
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 99987654 47889999999999999999 9999999999999999998744 456666666 45999999999999
Q ss_pred EEEecCCCcEEEEECCC---CceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecC
Q 010470 366 IFSGHIDGNLRLWDIQT---GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASN 442 (510)
Q Consensus 366 l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 442 (510)
|++++.|.+|++|+-.. -.++.++..++ ..|.+++|+|.|..|++++.|++++||-..+.-. ..+...+.
T Consensus 165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~-~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y-- 237 (312)
T KOG0645|consen 165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHE-NTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSRALY-- 237 (312)
T ss_pred eEEeccCCeEEEEeecCCCCeeEEEEecCcc-ceEEEEEecCCCceEEEecCCcceEeeeeccCcc----hhcccceE--
Confidence 99999999999998662 35778888887 7999999999999999999999999998652110 11222222
Q ss_pred ceeEEEcCCCCEEEEEcCCCeEEEEeCCCc------ceee-cccccCcCEEEEEEeCC-CCcEEEeeCCCeEEEcC
Q 010470 443 WSRSCISPDESYVAAGSADGSVYIWSISKA------DIVR-TLKEHTAPVLSCSWSGL-GKPLASADKNGVVCVWT 510 (510)
Q Consensus 443 ~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~------~~~~-~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd 510 (510)
.+.|. ...|++++.|+.|++|.-... +.+. .-..|...|+++.|+|. .+.|++|+.||.|++|.
T Consensus 238 --~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 238 --DVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred --eeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 25565 568999999999999975542 1222 22458899999999995 67899999999999994
No 31
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.5e-38 Score=294.83 Aligned_cols=242 Identities=24% Similarity=0.404 Sum_probs=224.6
Q ss_pred ccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC-------------------------------CeeEeecCCCCc
Q 010470 263 LYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG-------------------------------RVRHTLTGHTDK 311 (510)
Q Consensus 263 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-------------------------------~~~~~~~~~~~~ 311 (510)
+......++|..|++|++.++.|..|..|++|.+... ....++.+|.++
T Consensus 374 ~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GP 453 (707)
T KOG0263|consen 374 FHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGP 453 (707)
T ss_pred EEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCc
Confidence 3444567899999999999999999999999998631 123447799999
Q ss_pred eEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeec
Q 010470 312 VCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVA 390 (510)
Q Consensus 312 v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 390 (510)
|.+..|+| +.++|++++.|+++++|.+.+..++-.+.+| .+|.++.|+|.|-+|++++.|++-++|......+.+.+.
T Consensus 454 Vyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifa 532 (707)
T KOG0263|consen 454 VYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFA 532 (707)
T ss_pred eeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhc
Confidence 99999999 8999999999999999999999999888877 569999999999999999999999999999999999998
Q ss_pred ccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470 391 AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS 470 (510)
Q Consensus 391 ~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 470 (510)
+|- +.|.|+.|+|+..|+++|+.|.++++||..++..++.|.+|..++.. ++|||+|++|++|+.||.|.+||+.
T Consensus 533 ghl-sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~a----l~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 533 GHL-SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTA----LAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred ccc-cccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEE----EEEcCCCceEeecccCCcEEEEEcC
Confidence 887 99999999999999999999999999999999999999998887766 9999999999999999999999999
Q ss_pred CcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 471 KADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 471 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+++++..+.+|.+.|.++.|+.+|..||+||.|.+|++||
T Consensus 608 ~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 608 NGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWD 647 (707)
T ss_pred CCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence 9999999999999999999999999999999999999997
No 32
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.4e-37 Score=261.75 Aligned_cols=297 Identities=23% Similarity=0.420 Sum_probs=260.3
Q ss_pred cCCCccceeecc-ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceec--------ccccccceeEEEEecCCCE
Q 010470 211 STVPSTCKHKIN-AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSST--------LYGCLGSVLDLAITHDNRS 281 (510)
Q Consensus 211 ~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~ 281 (510)
...|....+.++ |...-+.|..|||||++|++|+.||.|.+||..+|+.... +.-+..+|.|++|+.|...
T Consensus 198 e~~Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEM 277 (508)
T KOG0275|consen 198 ERYPTQLARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEM 277 (508)
T ss_pred hhchHHhhhheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHH
Confidence 345555554444 4566799999999999999999999999999999987543 3457889999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCeeEeec-CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc-eeEEEE
Q 010470 282 VIAASSSNNLYVWDVNSGRVRHTLT-GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAF 359 (510)
Q Consensus 282 l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-i~~i~~ 359 (510)
+++|+.||.|++|.+.+|.+++.|. .|+..|+|+.|+. ++..+++++.|.++++.-+.+|+++..+.+|+. ++...|
T Consensus 278 lAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~f 356 (508)
T KOG0275|consen 278 LASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATF 356 (508)
T ss_pred hhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEE
Confidence 9999999999999999999999997 8999999999998 888999999999999999999999999999865 899999
Q ss_pred cCCCCEEEEecCCCcEEEEECCCCceeeeecccc-cccEEEEEEcCC-CCEEEEEecCCcEEEEEcCCceeeeEeecCCC
Q 010470 360 SMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS-LAAVTSISLSRS-GNIILTSGRDNLHNLFDIRSLEVCGSLRATGN 437 (510)
Q Consensus 360 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~i~~i~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 437 (510)
.++|..+++++.||+|++|+.++..++.++.... ..+|.++-.-|. ...++++...++++|.++. ++.+..+....
T Consensus 357 t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGk- 434 (508)
T KOG0275|consen 357 TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGK- 434 (508)
T ss_pred cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCC-
Confidence 9999999999999999999999999998887543 357888887774 5589999999999999985 56666665432
Q ss_pred eeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 438 RVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 438 ~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
.-...+.+.++||.|.++++.+.|+.++.|.+.+|++..++.-|...|.+++-+|..+.|++-+.||.+++|.
T Consensus 435 REgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 435 REGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 2334455678999999999999999999999999999999999999999999999999999999999999994
No 33
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-36 Score=248.58 Aligned_cols=283 Identities=23% Similarity=0.351 Sum_probs=239.9
Q ss_pred eccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 010470 220 KINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG 299 (510)
Q Consensus 220 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 299 (510)
.+.||..+++.+.|+.+|.+|++++.|.++.||-..+|+.+.++.+|.+.|+|+..+.+.+++++|+.|.++++||+.+|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46799999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred CeeEeecCCCCceEEEEEecCCCCEEEEEeC-----CCcEEEEECC-------CCeEeeeeeec-CceeEEEEcCCCCEE
Q 010470 300 RVRHTLTGHTDKVCAVDVSKISSRHVVSAAY-----DRTLKVWDLH-------KGYCVNTIIFH-SNCNALAFSMDGQTI 366 (510)
Q Consensus 300 ~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~-----dg~i~iwd~~-------~~~~~~~~~~~-~~i~~i~~~~~~~~l 366 (510)
+.+..++ ...+|..+.|++ ++++++.+.. .+.|.++|++ +..+...+..+ +.++.+-|.|-+.+|
T Consensus 85 k~la~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred cEEEEee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 9999988 568899999999 7777666543 4689999998 34455555544 569999999999999
Q ss_pred EEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeE
Q 010470 367 FSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRS 446 (510)
Q Consensus 367 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 446 (510)
++|..+|.|.+||+++|..+......+...|+.++++|+..++++++.|.+-++||.++...+.++.... ++++.
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~-----PvN~a 237 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTER-----PVNTA 237 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecc-----cccce
Confidence 9999999999999999866555543334899999999999999999999999999999999988886543 33448
Q ss_pred EEcCCCCEEEEEcCCCe--EE------------EEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 447 CISPDESYVAAGSADGS--VY------------IWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 447 ~~s~~~~~l~~~~~dg~--i~------------iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
+++|-...++.|+...- |. +|++-..+.+..+++|-+||++++|+|+|+..++|+.||.|++.
T Consensus 238 aisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 238 AISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred ecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 89998888777664322 22 22222224566678999999999999999999999999999873
No 34
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-37 Score=287.71 Aligned_cols=310 Identities=26% Similarity=0.430 Sum_probs=260.4
Q ss_pred HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCC--EEEEeeCCCeEEEEeCCCCcc-eecc
Q 010470 187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSA--RLISGGQDKSIKLWDTNTGSL-SSTL 263 (510)
Q Consensus 187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~~~dg~i~iwd~~~~~~-~~~~ 263 (510)
..+++++.|+.+++|+... ..+.+.|+||.|.|.++.|+|+-. .|++|..|+.+++||+.+... +..+
T Consensus 118 ~LlAtggaD~~v~VWdi~~---------~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~ 188 (775)
T KOG0319|consen 118 TLLATGGADGRVKVWDIKN---------GYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTM 188 (775)
T ss_pred ceEEeccccceEEEEEeeC---------CEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHH
Confidence 5678899999999999554 358999999999999999999765 489999999999999986554 8888
Q ss_pred cccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe------------------------------------------
Q 010470 264 YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV------------------------------------------ 301 (510)
Q Consensus 264 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------------------------------------------ 301 (510)
..|.+.|++++|++|+..+++++.|..+.+||+.+.+.
T Consensus 189 ~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~e 268 (775)
T KOG0319|consen 189 ILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSE 268 (775)
T ss_pred HhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecc
Confidence 89999999999999888888888888888888742100
Q ss_pred --------------------------------------------------------------------------------
Q 010470 302 -------------------------------------------------------------------------------- 301 (510)
Q Consensus 302 -------------------------------------------------------------------------------- 301 (510)
T Consensus 269 s~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~l 348 (775)
T KOG0319|consen 269 SGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPEL 348 (775)
T ss_pred cchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCce
Confidence
Q ss_pred ---------eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe----Eeeeeeec-CceeEEEEcCCC-CEE
Q 010470 302 ---------RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY----CVNTIIFH-SNCNALAFSMDG-QTI 366 (510)
Q Consensus 302 ---------~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~-~~i~~i~~~~~~-~~l 366 (510)
...+.+|...|.++.... .+.+|++|+.|.++++|-++++. ++....+| ..+.+++++..+ .+|
T Consensus 349 r~y~~~~~~c~ii~GH~e~vlSL~~~~-~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asff 427 (775)
T KOG0319|consen 349 RLYTLPTSYCQIIPGHTEAVLSLDVWS-SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFF 427 (775)
T ss_pred EEEecCCCceEEEeCchhheeeeeecc-cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEE
Confidence 001457888888888544 56799999999999999885443 33333444 458889987644 578
Q ss_pred EEecCCCcEEEEECCCCcee---eee-----cccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCe
Q 010470 367 FSGHIDGNLRLWDIQTGKLL---SEV-----AAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNR 438 (510)
Q Consensus 367 ~~~~~dg~i~i~d~~~~~~~---~~~-----~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 438 (510)
++++.|+++++|++...+.. ..+ ...|...|++++++|+..++++|+.|.+.+||++.......++.+|...
T Consensus 428 vsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RG 507 (775)
T KOG0319|consen 428 VSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRG 507 (775)
T ss_pred EEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccc
Confidence 89999999999999762211 111 1223378999999999999999999999999999999999999999888
Q ss_pred eecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 439 VASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 439 ~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+.+ +.|+|..+.++++|.|++|+||.+.++.+++++.||...|..+.|-.+|+.|++|+.||-|++|+
T Consensus 508 vw~----V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 508 VWC----VSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred eEE----EEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence 765 99999999999999999999999999999999999999999999999999999999999999996
No 35
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.2e-37 Score=278.95 Aligned_cols=286 Identities=19% Similarity=0.315 Sum_probs=265.5
Q ss_pred ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470 217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV 296 (510)
Q Consensus 217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 296 (510)
...++..|+..|.++.|+|....++++-.+|.|.|||.++...+.++.-..-+|.+..|-+..+.+++|+.|..|+||+.
T Consensus 5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 44566779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC-eEeeeeeecCc-eeEEEEcC-CCCEEEEecCCC
Q 010470 297 NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG-YCVNTIIFHSN-CNALAFSM-DGQTIFSGHIDG 373 (510)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~-i~~i~~~~-~~~~l~~~~~dg 373 (510)
++++.++.|..|.+.|.+++++| ...+++++|.|-+|++||...+ .+.+++.+|.. |.+++|+| |.+.+++++-|+
T Consensus 85 nt~ekV~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr 163 (794)
T KOG0276|consen 85 NTGEKVKTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR 163 (794)
T ss_pred ccceeeEEeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence 99999999999999999999999 7889999999999999999865 56778887765 99999999 778999999999
Q ss_pred cEEEEECCCCceeeeecccccccEEEEEEcCCC--CEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCC
Q 010470 374 NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSG--NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD 451 (510)
Q Consensus 374 ~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 451 (510)
+|++|.+.+..+..++.+|. ..|+|++|-+-| .+|++|++|.+++|||..+..++.++.+|.+.+.. ++|+|.
T Consensus 164 TVKVWslgs~~~nfTl~gHe-kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~----v~fhp~ 238 (794)
T KOG0276|consen 164 TVKVWSLGSPHPNFTLEGHE-KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSF----VFFHPE 238 (794)
T ss_pred cEEEEEcCCCCCceeeeccc-cCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceE----EEecCC
Confidence 99999999999999999887 899999998855 59999999999999999999999999999887765 899999
Q ss_pred CCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEE
Q 010470 452 ESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCV 508 (510)
Q Consensus 452 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i 508 (510)
-.+|++|+.||+|+||+..+.+...++......|++++-.+.+..++.|.+.|.|.+
T Consensus 239 lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 239 LPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred CcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 999999999999999999999999999888889999999998888999988888754
No 36
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-35 Score=249.10 Aligned_cols=287 Identities=21% Similarity=0.341 Sum_probs=249.2
Q ss_pred eeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeC--CCeEEEEE
Q 010470 218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS--SNNLYVWD 295 (510)
Q Consensus 218 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd 295 (510)
.+.|..-.+.|+++.|+++|.++++++.|.+++|||..+++.+.++..+.-.+..++|......++.++. |.+|+..+
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence 3445556778999999999999999999999999999999999999988889999999888888888876 88999999
Q ss_pred cCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcE
Q 010470 296 VNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNL 375 (510)
Q Consensus 296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i 375 (510)
+.+++.++.|.||...|.+++.+| .+..+++++.|++|++||++..++...+..... ..++|+|.|-++|++.....|
T Consensus 87 l~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfDp~GLifA~~~~~~~I 164 (311)
T KOG1446|consen 87 LHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFDPEGLIFALANGSELI 164 (311)
T ss_pred eecCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCC-cceeECCCCcEEEEecCCCeE
Confidence 999999999999999999999999 669999999999999999998887776655543 468999999999999988899
Q ss_pred EEEECCCC--ceeeeecc--cccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCC
Q 010470 376 RLWDIQTG--KLLSEVAA--HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD 451 (510)
Q Consensus 376 ~i~d~~~~--~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 451 (510)
++||+|+- .+...+.. ......+.+.|+|+|++|+.++..+.+++.|.-+|....++..+......+ ...+|+||
T Consensus 165 kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~-~~a~ftPd 243 (311)
T KOG1446|consen 165 KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLP-LSATFTPD 243 (311)
T ss_pred EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcc-eeEEECCC
Confidence 99999863 33334332 233789999999999999999999999999999999999988777665433 33789999
Q ss_pred CCEEEEEcCCCeEEEEeCCCcceeecccc-cCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 452 ESYVAAGSADGSVYIWSISKADIVRTLKE-HTAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 452 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
|++|++|+.||+|.+|++.++..+..+.+ +.+++.++.|+|.-.+++++ +..+.+|
T Consensus 244 s~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw 300 (311)
T KOG1446|consen 244 SKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFW 300 (311)
T ss_pred CcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEE
Confidence 99999999999999999999999999988 78999999999986666665 4566666
No 37
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=7.6e-38 Score=254.01 Aligned_cols=280 Identities=24% Similarity=0.392 Sum_probs=252.8
Q ss_pred eccccccceEEEEEec---CCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470 220 KINAHEGGCASILFEY---NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV 296 (510)
Q Consensus 220 ~~~~h~~~v~~~~~s~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 296 (510)
+..||+.+|..++||| +|-+|++++.||.-.+-+-++|.-+.++.+|.+.|++.+.+.+...-++++.|-+.++||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 4578999999999985 8889999999999999999999999999999999999999999888899999999999999
Q ss_pred CCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe-Eeeeeeec-CceeEEEEcCCCCEEEEecCCCc
Q 010470 297 NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY-CVNTIIFH-SNCNALAFSMDGQTIFSGHIDGN 374 (510)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~ 374 (510)
-+|..++.|. |..-|.+++|+. +.++|++|+.+..++|||++... +...+..+ +.|..+.|....+.|++.+.|++
T Consensus 89 ~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~t 166 (334)
T KOG0278|consen 89 VTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKT 166 (334)
T ss_pred hhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCc
Confidence 9999999987 899999999998 89999999999999999997643 33444444 55999999998999999999999
Q ss_pred EEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCE
Q 010470 375 LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESY 454 (510)
Q Consensus 375 i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 454 (510)
|++||.+++..++.+... .+|+++.++++|++|.++ ..+.|.+||..+...+..+..+.+.. +.+++|+...
T Consensus 167 VRLWD~rTgt~v~sL~~~--s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV~-----SASL~P~k~~ 238 (334)
T KOG0278|consen 167 VRLWDHRTGTEVQSLEFN--SPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCNVE-----SASLHPKKEF 238 (334)
T ss_pred eEEEEeccCcEEEEEecC--CCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccccc-----cccccCCCce
Confidence 999999999999999887 799999999999987665 56689999999999888887665543 3678999999
Q ss_pred EEEEcCCCeEEEEeCCCcceeecc-cccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 455 VAAGSADGSVYIWSISKADIVRTL-KEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 455 l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
+++|+.|+.++.||..+++.+..+ ++|.++|.|+.|+|+|...++|+.||+|++|
T Consensus 239 fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 239 FVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLW 294 (334)
T ss_pred EEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEE
Confidence 999999999999999999988886 8899999999999999999999999999999
No 38
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=5.6e-36 Score=244.80 Aligned_cols=277 Identities=19% Similarity=0.291 Sum_probs=250.7
Q ss_pred eeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceec--ccccccceeEEEEecC-CCEEEEEeCCCeEEEEE
Q 010470 219 HKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSST--LYGCLGSVLDLAITHD-NRSVIAASSSNNLYVWD 295 (510)
Q Consensus 219 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd 295 (510)
..+.+|...|.+++|+.+|..|++|+.|+++.+|+++..+.... ..+|.+.|-.++|+|. ...+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 66789999999999999999999999999999999987765443 4589999999999875 56788999999999999
Q ss_pred cCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcE
Q 010470 296 VNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNL 375 (510)
Q Consensus 296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i 375 (510)
++.+++...+....+.+ -+.|+| ++.+++.++.|..|.+.|.++.+.+........++.++|+.++++++..+..|+|
T Consensus 94 ~r~~k~~~~i~~~~eni-~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENI-NITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCV 171 (313)
T ss_pred eccCcEEEEeeccCcce-EEEEcC-CCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceE
Confidence 99999999887655555 477999 8999999999999999999999998888888889999999888888888888999
Q ss_pred EEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEE
Q 010470 376 RLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 455 (510)
Q Consensus 376 ~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 455 (510)
.|......+++..+..|. ....||.|+|+|++|++|+.|..+.+||+...-+...+.....++.. +.||.||++|
T Consensus 172 ~ILsypsLkpv~si~AH~-snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRT----lSFS~dg~~l 246 (313)
T KOG1407|consen 172 EILSYPSLKPVQSIKAHP-SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRT----LSFSHDGRML 246 (313)
T ss_pred EEEeccccccccccccCC-cceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEE----EEeccCccee
Confidence 999999999999999998 89999999999999999999999999999988888888888777776 9999999999
Q ss_pred EEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCC
Q 010470 456 AAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKN 503 (510)
Q Consensus 456 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 503 (510)
|+||.|..|-|-++.+|..+..++ +.++...++|+|...+|+.+++|
T Consensus 247 ASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 247 ASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 999999999999999999999887 78899999999999999887664
No 39
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.2e-36 Score=279.66 Aligned_cols=289 Identities=21% Similarity=0.355 Sum_probs=258.4
Q ss_pred ccceeeccccccceEEEEEe-cCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEE
Q 010470 215 STCKHKINAHEGGCASILFE-YNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYV 293 (510)
Q Consensus 215 ~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 293 (510)
.+....+-|..+.|..|+|- |+.++|++++..+.+++|+..+..+. .+.+|...|.++....+|-+|++|+.|+++++
T Consensus 313 l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svil 391 (775)
T KOG0319|consen 313 LTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVIL 391 (775)
T ss_pred cEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEE
Confidence 34556678889999999885 67789999999999999998877664 78899999999997678889999999999999
Q ss_pred EEcCCCC----eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEee---ee-------eecCceeEEEE
Q 010470 294 WDVNSGR----VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN---TI-------IFHSNCNALAF 359 (510)
Q Consensus 294 wd~~~~~----~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~-------~~~~~i~~i~~ 359 (510)
|.++.+. ++....+|.+.|.+++++.....+|+++|.|+++++|++...+... .+ .+...|+|+++
T Consensus 392 Wr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai 471 (775)
T KOG0319|consen 392 WRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAI 471 (775)
T ss_pred EEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEe
Confidence 9885443 4566789999999999988778899999999999999997622111 11 12245999999
Q ss_pred cCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCee
Q 010470 360 SMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRV 439 (510)
Q Consensus 360 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 439 (510)
+|+...|++|+.|.+.++|++........+.+|. ..+.++.|+|..+.+++++.|.+|+||.+.++.++++|.+|...+
T Consensus 472 a~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~-RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aV 550 (775)
T KOG0319|consen 472 APNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHT-RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAV 550 (775)
T ss_pred cCCCceEEecccccceeeecccCceEEEEeeCCc-cceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCcccee
Confidence 9999999999999999999999999999999998 899999999999999999999999999999999999999998777
Q ss_pred ecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 440 ASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 440 ~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
.. +.|-.+|..|++++.||-|++|++++++++.++..|.+.|++++-+|.+.+++||+.||.|.+|
T Consensus 551 lr----a~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 551 LR----ASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFW 616 (775)
T ss_pred Ee----eeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEe
Confidence 65 8899999999999999999999999999999999999999999999999999999999999999
No 40
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.1e-35 Score=262.82 Aligned_cols=306 Identities=17% Similarity=0.265 Sum_probs=256.4
Q ss_pred cccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc-c-eecccccccceeEEEEecC
Q 010470 201 SEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS-L-SSTLYGCLGSVLDLAITHD 278 (510)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-~-~~~~~~~~~~v~~~~~~~~ 278 (510)
+..+...+....-.......+..|...++-..|||.|.|+|+|...|+|+|||..... . ..+++.-.++|.+++|+++
T Consensus 35 Y~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~d 114 (603)
T KOG0318|consen 35 YTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFD 114 (603)
T ss_pred EeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCC
Confidence 3333333333333344567788999999999999999999999999999999986532 2 3456677899999999999
Q ss_pred CCEEEEEeCC--CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc-ee
Q 010470 279 NRSVIAASSS--NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CN 355 (510)
Q Consensus 279 ~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-i~ 355 (510)
++.|++.+.. ...++|-.++|..+..+.+|...|.++.|-|..+..+++|+.|++|.+|+-..-+...++..|+. |+
T Consensus 115 s~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~ 194 (603)
T KOG0318|consen 115 SKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVN 194 (603)
T ss_pred CcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccccccccee
Confidence 9999988743 23334444568888999999999999999998888999999999999998766666666666665 99
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEECCCCceeeeec---ccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEe
Q 010470 356 ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVA---AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 432 (510)
Q Consensus 356 ~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (510)
|+.|+|||..+++.+.||+|.+||-.+|+.+..+. .|. +.|.+++|+||+..+++++.|.+++|||+.+...+.++
T Consensus 195 ~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHk-GsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~ 273 (603)
T KOG0318|consen 195 CVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHK-GSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTW 273 (603)
T ss_pred eEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCcc-ccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEe
Confidence 99999999999999999999999999999999887 555 89999999999999999999999999999999999988
Q ss_pred ecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 433 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 433 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
..........+ .+.|. +..|++.+.+|.|.+++.....++..+.+|..+|+++..+|++++|++|+.||.|.-|+
T Consensus 274 ~~~~~v~dqqv-G~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 274 PMGSTVEDQQV-GCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWD 348 (603)
T ss_pred ecCCchhceEE-EEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEe
Confidence 76655222212 23343 67888999999999999999999999999999999999999999999999999999996
No 41
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.4e-36 Score=279.75 Aligned_cols=283 Identities=21% Similarity=0.348 Sum_probs=260.1
Q ss_pred eeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 010470 219 HKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS 298 (510)
Q Consensus 219 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 298 (510)
..+.||...|.+++||.+...+++|+ .++|+||+..+.++++++... .+.+..|.|.++++++|...|.+.+||+.+
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 46789999999999999987777776 568999999999999998643 889999999999999999999999999999
Q ss_pred CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC-----CeE--------eeeeeecCceeEEEEcCCCCE
Q 010470 299 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK-----GYC--------VNTIIFHSNCNALAFSMDGQT 365 (510)
Q Consensus 299 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~--------~~~~~~~~~i~~i~~~~~~~~ 365 (510)
...+.++..|.+.+++++.+| ++..+++||.|.+|++||..- |.. .+++.....+.|+.++|||++
T Consensus 444 ~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~ 522 (888)
T KOG0306|consen 444 ASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL 522 (888)
T ss_pred hhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence 999999999999999999999 899999999999999999741 211 134445567999999999999
Q ss_pred EEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCcee
Q 010470 366 IFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSR 445 (510)
Q Consensus 366 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 445 (510)
++++--|.+|.||-+.+.+....+.+|. -||.|+.++||++.+++|+.|..|++|-+.-|.+-..+.+|...+.+
T Consensus 523 LaVsLLdnTVkVyflDtlKFflsLYGHk-LPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~---- 597 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTLKFFLSLYGHK-LPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMS---- 597 (888)
T ss_pred EEEEeccCeEEEEEecceeeeeeecccc-cceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeE----
Confidence 9999999999999999999999999998 89999999999999999999999999999999998888888877665
Q ss_pred EEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 446 SCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 446 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+.|-|....+++++.||.|+-||-...+.+..+.+|...|++++.+|+|.+++++|.|.+|++|.
T Consensus 598 V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 598 VQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred EEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 89999999999999999999999999999999999999999999999999999999999999995
No 42
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.2e-37 Score=264.36 Aligned_cols=267 Identities=25% Similarity=0.466 Sum_probs=233.8
Q ss_pred cccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeE
Q 010470 224 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH 303 (510)
Q Consensus 224 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 303 (510)
...+|.|+.+. ...+++|..|++|+|||.++..+...+.||.+.|.|+.|. .+.+++|+.|.+|++||+++++++.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence 34579999986 4589999999999999999999999999999999999984 6699999999999999999999999
Q ss_pred eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE---eeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEE
Q 010470 304 TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC---VNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWD 379 (510)
Q Consensus 304 ~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d 379 (510)
++-+|...|..+.|+ ++++++++.|.++.+||+.+... .+.+.+| ..|+.+.|+ .+++++++.|.+|++|+
T Consensus 272 tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~ 346 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWS 346 (499)
T ss_pred HHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEe
Confidence 999999999999995 58999999999999999976542 2233344 458888884 67999999999999999
Q ss_pred CCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEc
Q 010470 380 IQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGS 459 (510)
Q Consensus 380 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 459 (510)
+.++..+..+.+|. .+|-|+.+ .|+++++|+.|++|++||+..|..+..+.+|..-+.+ + -.|.+.|++|+
T Consensus 347 ~st~efvRtl~gHk-RGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRc----i--RFd~krIVSGa 417 (499)
T KOG0281|consen 347 TSTCEFVRTLNGHK-RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC----I--RFDNKRIVSGA 417 (499)
T ss_pred ccceeeehhhhccc-ccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhh----e--eecCceeeecc
Confidence 99999999999988 78888877 5899999999999999999999999999998887754 4 44788999999
Q ss_pred CCCeEEEEeCCCcc---------eeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 460 ADGSVYIWSISKAD---------IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 460 ~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
.||+|+|||+..+. ++.++..|++.|..+.| |...+++++.|.+|.|||
T Consensus 418 YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 418 YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWD 475 (499)
T ss_pred ccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEE
Confidence 99999999998753 34455669999999999 566899999999999997
No 43
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.9e-37 Score=268.65 Aligned_cols=268 Identities=22% Similarity=0.354 Sum_probs=231.6
Q ss_pred HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccc-
Q 010470 187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYG- 265 (510)
Q Consensus 187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~- 265 (510)
..+.+++..|.+..|+... ......+.+|..+|.++.|+++|.++++|+.+|.|++|+.+-... ..+..
T Consensus 109 RRLltgs~SGEFtLWNg~~---------fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV-k~~~ah 178 (464)
T KOG0284|consen 109 RRLLTGSQSGEFTLWNGTS---------FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV-KIIQAH 178 (464)
T ss_pred ceeEeecccccEEEecCce---------eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh-HHhhHh
Confidence 4566777777788887533 334456789999999999999999999999999999999875444 44554
Q ss_pred cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEe
Q 010470 266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV 345 (510)
Q Consensus 266 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 345 (510)
|...|.+++|+|++..+++++.||+|+|||....+....+.+|.-.|.++.|+| ...+|+++|.|..|++||.+++.++
T Consensus 179 h~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprSg~cl 257 (464)
T KOG0284|consen 179 HAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSCL 257 (464)
T ss_pred hhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccCCceeEeecCCCcchh
Confidence 459999999999999999999999999999999988889999999999999999 7889999999999999999999999
Q ss_pred eeeeecCc-eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcC-CCCEEEEEecCCcEEEEEc
Q 010470 346 NTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSR-SGNIILTSGRDNLHNLFDI 423 (510)
Q Consensus 346 ~~~~~~~~-i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~i~d~ 423 (510)
.++..|.. |..+.|+|++++|++++.|..+++||+++.+.++.+..|. ..++++.|+| ...+|.+|+.||.|..|.+
T Consensus 258 ~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hk-kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v 336 (464)
T KOG0284|consen 258 ATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHK-KDVTSLTWHPLNESLFTSGGSDGSVVHWVV 336 (464)
T ss_pred hhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcch-hhheeeccccccccceeeccCCCceEEEec
Confidence 99988755 9999999999999999999999999999999999999887 8999999999 4568889999999999999
Q ss_pred CCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470 424 RSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI 469 (510)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~ 469 (510)
...+++..+. ......+.+++|+|-|.+|++|+.|.++++|.-
T Consensus 337 ~~~~p~~~i~---~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 337 GLEEPLGEIP---PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred cccccccCCC---cccccceeeeeccccceeEeecCCCcceeeecc
Confidence 8544443332 222234455999999999999999999999974
No 44
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.2e-36 Score=276.87 Aligned_cols=311 Identities=23% Similarity=0.333 Sum_probs=260.2
Q ss_pred hHHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccc
Q 010470 186 LEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYG 265 (510)
Q Consensus 186 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 265 (510)
...++-|-.||.+++|+.... ....++.||...|+++.|+..|.+|++||.|+.|.+||+-...-...+.|
T Consensus 77 ~l~lAVGYaDGsVqif~~~s~---------~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~G 147 (888)
T KOG0306|consen 77 ILLLAVGYADGSVQIFSLESE---------EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRG 147 (888)
T ss_pred cceEEEEecCceEEeeccCCC---------ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeec
Confidence 344577888999999986642 45678999999999999999999999999999999999987777788889
Q ss_pred cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEe-----------------------------------------
Q 010470 266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT----------------------------------------- 304 (510)
Q Consensus 266 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~----------------------------------------- 304 (510)
|...|+..-|..+.+++++++.|+.|++||+.+..+..+
T Consensus 148 Hkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~ 227 (888)
T KOG0306|consen 148 HKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKET 227 (888)
T ss_pred chHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccc
Confidence 988888888887778888888888888888864411111
Q ss_pred --------------------------------------------------------------------------------
Q 010470 305 -------------------------------------------------------------------------------- 304 (510)
Q Consensus 305 -------------------------------------------------------------------------------- 304 (510)
T Consensus 228 ~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl 307 (888)
T KOG0306|consen 228 NRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSL 307 (888)
T ss_pred cccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhH
Confidence
Q ss_pred -------------------------------------------------------------ecCCCCceEEEEEecCCCC
Q 010470 305 -------------------------------------------------------------LTGHTDKVCAVDVSKISSR 323 (510)
Q Consensus 305 -------------------------------------------------------------~~~~~~~v~~i~~~~~~~~ 323 (510)
+.+|...|.+++++. +..
T Consensus 308 ~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~-d~~ 386 (888)
T KOG0306|consen 308 SDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS-DSI 386 (888)
T ss_pred HHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec-Cce
Confidence 346777888888876 444
Q ss_pred EEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEc
Q 010470 324 HVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLS 403 (510)
Q Consensus 324 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~ 403 (510)
.+++| ..+.|++|+..+.++++++... .+.+..|.|.++++++|...|.+.+||+.+...+..+..|. +.|.+++.+
T Consensus 387 ~~~Sg-a~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHd-gaIWsi~~~ 463 (888)
T KOG0306|consen 387 LLASG-AGESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHD-GAIWSISLS 463 (888)
T ss_pred eeeec-CCCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccc-cceeeeeec
Confidence 44444 4789999999999999998877 68889999999999999999999999999999998888777 999999999
Q ss_pred CCCCEEEEEecCCcEEEEEcCCc-----eeeeEeecC---CCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccee
Q 010470 404 RSGNIILTSGRDNLHNLFDIRSL-----EVCGSLRAT---GNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIV 475 (510)
Q Consensus 404 ~~~~~l~~~~~d~~i~i~d~~~~-----~~~~~~~~~---~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 475 (510)
||+..+++++.|.+|++||..-. .....+..+ .-.....+.++.+||||++|+++=-|.+|+||-+++.+..
T Consensus 464 pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFf 543 (888)
T KOG0306|consen 464 PDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFF 543 (888)
T ss_pred CCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeee
Confidence 99999999999999999997521 111111111 1122335667999999999999999999999999999999
Q ss_pred ecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 476 RTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 476 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
-++-||.-||.|+..|||++.++|||.|.+|++|
T Consensus 544 lsLYGHkLPV~smDIS~DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 544 LSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW 577 (888)
T ss_pred eeecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence 9999999999999999999999999999999999
No 45
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=1.9e-35 Score=256.72 Aligned_cols=268 Identities=19% Similarity=0.334 Sum_probs=235.6
Q ss_pred HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc
Q 010470 187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC 266 (510)
Q Consensus 187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 266 (510)
..++++..|..|+.|+..... .....++.|-.++|+.+.|.+++.++++++.|+.+++|++++.+...++.+|
T Consensus 188 dtlatgg~Dr~Ik~W~v~~~k-------~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGH 260 (459)
T KOG0288|consen 188 DTLATGGSDRIIKLWNVLGEK-------SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGH 260 (459)
T ss_pred chhhhcchhhhhhhhhcccch-------hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhccc
Confidence 568889999999999855421 3466788899999999999999999999999999999999999999999999
Q ss_pred ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEee
Q 010470 267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN 346 (510)
Q Consensus 267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 346 (510)
.+.|+++.|......+++|+.|.+|++||+....+..++. ....+..|... ...+++|-.|+.|++||.+++.+..
T Consensus 261 tdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~ 336 (459)
T KOG0288|consen 261 TDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTR 336 (459)
T ss_pred ccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec---ceeeeecccccceEEEeccCCceee
Confidence 9999999998887779999999999999999888777765 34556666664 4678999999999999999999999
Q ss_pred eeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccc---cccEEEEEEcCCCCEEEEEecCCcEEEEEc
Q 010470 347 TIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS---LAAVTSISLSRSGNIILTSGRDNLHNLFDI 423 (510)
Q Consensus 347 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~ 423 (510)
.+..++.++++..+++|..+.+++.|.++.++|+++......+.... ....+.+.|||++.|+++|+.||.|+||++
T Consensus 337 sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v 416 (459)
T KOG0288|consen 337 SVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSV 416 (459)
T ss_pred EeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEc
Confidence 99999999999999999999999999999999999988877776432 245888999999999999999999999999
Q ss_pred CCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEE
Q 010470 424 RSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIW 467 (510)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iw 467 (510)
.++++...+....... .+.+++|+|.|.++++++.++.+.+|
T Consensus 417 ~tgKlE~~l~~s~s~~--aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 417 FTGKLEKVLSLSTSNA--AITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred cCceEEEEeccCCCCc--ceEEEEEcCCCchhhcccCCcceEec
Confidence 9999988877655442 45669999999999999999999999
No 46
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.2e-36 Score=256.71 Aligned_cols=268 Identities=24% Similarity=0.419 Sum_probs=243.5
Q ss_pred HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC-Ccceecccc
Q 010470 187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT-GSLSSTLYG 265 (510)
Q Consensus 187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~ 265 (510)
...+..+.|+.+++|+... ..+...++||...|..++|+..|+++++++.|=.+++||..+ .++++...+
T Consensus 121 ~~v~~as~d~tikv~D~~t---------g~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~g 191 (406)
T KOG0295|consen 121 ALVVSASEDATIKVFDTET---------GELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIG 191 (406)
T ss_pred eEEEEecCCceEEEEEccc---------hhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcC
Confidence 3445566788888888544 446788999999999999999999999999999999999987 567888899
Q ss_pred cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEe
Q 010470 266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV 345 (510)
Q Consensus 266 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 345 (510)
|...|.+++|-|.|.++++++.|.+|+.|++.+|-++.++.+|...|..+..+. ++.++++++.|.++++|-+.++.+.
T Consensus 192 h~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k 270 (406)
T KOG0295|consen 192 HEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCK 270 (406)
T ss_pred cccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEeccchhh
Confidence 999999999999999999999999999999999999999999999999999998 8999999999999999999999888
Q ss_pred eeeeec-CceeEEEEcCC---------------CCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEE
Q 010470 346 NTIIFH-SNCNALAFSMD---------------GQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNII 409 (510)
Q Consensus 346 ~~~~~~-~~i~~i~~~~~---------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 409 (510)
..+..+ .++.|++|.|. +.++.+++.|++|++||+.++.++.++.+|. ..|.+++|+|.|+||
T Consensus 271 ~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghd-nwVr~~af~p~Gkyi 349 (406)
T KOG0295|consen 271 AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHD-NWVRGVAFSPGGKYI 349 (406)
T ss_pred hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEeccc-ceeeeeEEcCCCeEE
Confidence 777766 45788888653 3589999999999999999999999999998 999999999999999
Q ss_pred EEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470 410 LTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI 469 (510)
Q Consensus 410 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~ 469 (510)
+++.+|+++++||+++.+....+..+...+.+ +.|+.+..++++|+-|.++++|..
T Consensus 350 ~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~----lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 350 LSCADDKTLRVWDLKNLQCMKTLEAHEHFVTS----LDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEecCCcEEEEEeccceeeeccCCCcceeEE----EecCCCCceEEeccccceeeeeec
Confidence 99999999999999999999999988777765 899999999999999999999974
No 47
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5.4e-36 Score=255.34 Aligned_cols=245 Identities=27% Similarity=0.461 Sum_probs=230.4
Q ss_pred cceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEE
Q 010470 258 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 337 (510)
Q Consensus 258 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iw 337 (510)
+..+.+.+|.+.|.|+++.|.+..|++|+.|+++.|||+.+|++..++.+|...|..+++++ -..++++++.|+.|+.|
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~-rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSK-RHPYLFSAGEDKQVKCW 220 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecc-cCceEEEecCCCeeEEE
Confidence 33456789999999999999999999999999999999999999999999999999999998 78899999999999999
Q ss_pred ECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCC
Q 010470 338 DLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDN 416 (510)
Q Consensus 338 d~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~ 416 (510)
|+...+.++.+.+| +.|.|++.+|.-..|++|+.|.++++||+++...+..+.+|. .+|.++.+.|-...+++|+.|+
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~-~~V~~V~~~~~dpqvit~S~D~ 299 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHT-NPVASVMCQPTDPQVITGSHDS 299 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCC-CcceeEEeecCCCceEEecCCc
Confidence 99999999988877 669999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred cEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCc
Q 010470 417 LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKP 496 (510)
Q Consensus 417 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 496 (510)
+|++||++.++....+..|...+.. ++.+|....+++++.|. |+-|++..|..+..+.+|..-|++++...|| +
T Consensus 300 tvrlWDl~agkt~~tlt~hkksvra----l~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v 373 (460)
T KOG0285|consen 300 TVRLWDLRAGKTMITLTHHKKSVRA----LCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-V 373 (460)
T ss_pred eEEEeeeccCceeEeeecccceeeE----EecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-e
Confidence 9999999999999999888877765 89999999999999886 9999999999999999999999999998876 7
Q ss_pred EEEeeCCCeEEEcC
Q 010470 497 LASADKNGVVCVWT 510 (510)
Q Consensus 497 l~s~~~dg~i~iwd 510 (510)
+++|+.+|.+.+||
T Consensus 374 ~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWD 387 (460)
T ss_pred EEEcCCceEEEEEe
Confidence 89999999999997
No 48
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=2.8e-35 Score=262.47 Aligned_cols=296 Identities=21% Similarity=0.384 Sum_probs=238.5
Q ss_pred CCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc----eeccc-ccccceeEEEEecCCCEEEEEe
Q 010470 212 TVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL----SSTLY-GCLGSVLDLAITHDNRSVIAAS 286 (510)
Q Consensus 212 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~-~~~~~v~~~~~~~~~~~l~~~~ 286 (510)
.+|..+...+.+|+..|+++++.|.|..|++||.|..|++||+..... .+.+. .....|.++.|++.|..|++.+
T Consensus 154 ~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs 233 (641)
T KOG0772|consen 154 LIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS 233 (641)
T ss_pred cCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEe
Confidence 478888999999999999999999999999999999999999974322 22222 3456899999999999999999
Q ss_pred CCCeEEEEEcCCCCeeE------------eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE-eeeeeec--
Q 010470 287 SSNNLYVWDVNSGRVRH------------TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC-VNTIIFH-- 351 (510)
Q Consensus 287 ~d~~i~iwd~~~~~~~~------------~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~-- 351 (510)
.....+|+|-....... .-+||...++|.+|+|.+...|++++.||++++||+...+. ...+...
T Consensus 234 g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~ 313 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA 313 (641)
T ss_pred cCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence 99999999954322221 23589999999999999899999999999999999986543 2222221
Q ss_pred ----CceeEEEEcCCCCEEEEecCCCcEEEEECCCC--ceeeeeccccc--ccEEEEEEcCCCCEEEEEecCCcEEEEEc
Q 010470 352 ----SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTG--KLLSEVAAHSL--AAVTSISLSRSGNIILTSGRDNLHNLFDI 423 (510)
Q Consensus 352 ----~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~d~~i~i~d~ 423 (510)
-+++.++|+++|+.|++|+.||.|.+|+.++. .+...+...|. ..|+||.||++|++|++-+.|+++++||+
T Consensus 314 ~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL 393 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDL 393 (641)
T ss_pred CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeec
Confidence 24889999999999999999999999997543 33334443332 38999999999999999999999999999
Q ss_pred CCce-eeeEeecCCCeeecCceeEEEcCCCCEEEEEcC------CCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCc
Q 010470 424 RSLE-VCGSLRATGNRVASNWSRSCISPDESYVAAGSA------DGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKP 496 (510)
Q Consensus 424 ~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 496 (510)
+..+ ++....+-.... .-+.++|||+.++|++|+. .|.+++||..+...+..+......|..+.|+|.-+.
T Consensus 394 rq~kkpL~~~tgL~t~~--~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQ 471 (641)
T KOG0772|consen 394 RQFKKPLNVRTGLPTPF--PGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQ 471 (641)
T ss_pred cccccchhhhcCCCccC--CCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhh
Confidence 9754 333333322222 2244799999999999875 578999999999999988878889999999999999
Q ss_pred EEEeeCCCeEEEc
Q 010470 497 LASADKNGVVCVW 509 (510)
Q Consensus 497 l~s~~~dg~i~iw 509 (510)
|+.|+.||.+++|
T Consensus 472 i~~gsgdG~~~vy 484 (641)
T KOG0772|consen 472 IFAGSGDGTAHVY 484 (641)
T ss_pred eeeecCCCceEEE
Confidence 9999999999886
No 49
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=9.9e-35 Score=243.18 Aligned_cols=295 Identities=20% Similarity=0.353 Sum_probs=248.1
Q ss_pred CccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC------------C------cceecccccccceeEEEE
Q 010470 214 PSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT------------G------SLSSTLYGCLGSVLDLAI 275 (510)
Q Consensus 214 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~------------~------~~~~~~~~~~~~v~~~~~ 275 (510)
+......+..|.+++.+.+|||||.++++|+.|.+|+|.|++. + ..++++..|...|+++.|
T Consensus 101 ~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F 180 (430)
T KOG0640|consen 101 SEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF 180 (430)
T ss_pred cccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee
Confidence 3345567889999999999999999999999999999999861 1 246788899999999999
Q ss_pred ecCCCEEEEEeCCCeEEEEEcCCCCeeEeec--CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec--
Q 010470 276 THDNRSVIAASSSNNLYVWDVNSGRVRHTLT--GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-- 351 (510)
Q Consensus 276 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-- 351 (510)
+|....|++|+.|++|++||+......+.++ ....+|.++.|+| .+.+++.|....++++||+++-++...-...
T Consensus 181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~q 259 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQ 259 (430)
T ss_pred cchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccc
Confidence 9999999999999999999997654333322 3567899999999 8999999999999999999998876554432
Q ss_pred --CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecc-cccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCcee
Q 010470 352 --SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAA-HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV 428 (510)
Q Consensus 352 --~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 428 (510)
..|+++.+++.|++.++|+.||.|++||--+++++.++.. |....|.+..|..+|+|+++++.|..+++|.+.+++.
T Consensus 260 ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 260 HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 3599999999999999999999999999999999998874 4456899999999999999999999999999999999
Q ss_pred eeEeecCCCeeec-CceeEEEcCCCCEEEEEcC-CCeEEEEeCCCcceeeccc-ccCcCEEEEEEeCCCCcEEEeeCCCe
Q 010470 429 CGSLRATGNRVAS-NWSRSCISPDESYVAAGSA-DGSVYIWSISKADIVRTLK-EHTAPVLSCSWSGLGKPLASADKNGV 505 (510)
Q Consensus 429 ~~~~~~~~~~~~~-~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~ 505 (510)
+..+.+.+..... --+...|.....|++.-.. .+.+.-||..+...+..+. +|.+++..+.-||.+..+++|+.|..
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~r 419 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFR 419 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccce
Confidence 9988766432211 1122456777777766543 5789999999887766553 59999999999999999999999999
Q ss_pred EEEc
Q 010470 506 VCVW 509 (510)
Q Consensus 506 i~iw 509 (510)
+++|
T Consensus 420 aRFW 423 (430)
T KOG0640|consen 420 ARFW 423 (430)
T ss_pred eeee
Confidence 9999
No 50
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.2e-34 Score=278.01 Aligned_cols=270 Identities=28% Similarity=0.519 Sum_probs=235.6
Q ss_pred hhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeC-CCCcceecccccc
Q 010470 189 LAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDT-NTGSLSSTLYGCL 267 (510)
Q Consensus 189 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~ 267 (510)
++.++.++.+++|..... .......+.+|...|++++|+|+|.++++|+.|++|+|||+ ..+..+.++.+|.
T Consensus 174 l~~~~~~~~i~~~~~~~~-------~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~ 246 (456)
T KOG0266|consen 174 LAAASSDGLIRIWKLEGI-------KSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHS 246 (456)
T ss_pred EEEccCCCcEEEeecccc-------cchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCC
Confidence 455566777777765220 00356667899999999999999999999999999999999 5668899999999
Q ss_pred cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe--Ee
Q 010470 268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY--CV 345 (510)
Q Consensus 268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~ 345 (510)
..|++++|+|+++.+++|+.|++|+|||+.++++...+.+|.+.|.+++|++ ++++|++++.||.|++||+.++. +.
T Consensus 247 ~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~ 325 (456)
T KOG0266|consen 247 TYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCL 325 (456)
T ss_pred CceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCceeee
Confidence 9999999999999999999999999999999999999999999999999999 89999999999999999999998 55
Q ss_pred eeeeecC---ceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccc--cEEEEEEcCCCCEEEEEecCCcEEE
Q 010470 346 NTIIFHS---NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLA--AVTSISLSRSGNIILTSGRDNLHNL 420 (510)
Q Consensus 346 ~~~~~~~---~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~i~~i~~~~~~~~l~~~~~d~~i~i 420 (510)
..+.... .+++++|+|++.++++++.|+.+++||+..+..+..+..+... .+.+..+++.+.++++|+.|+.|.+
T Consensus 326 ~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~ 405 (456)
T KOG0266|consen 326 KLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYV 405 (456)
T ss_pred ecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEE
Confidence 6665443 4699999999999999999999999999999999999888754 5556667889999999999999999
Q ss_pred EEcCCceeeeEeecC-CCeeecCceeEEEcCCCCEEEEEc--CCCeEEEEeCC
Q 010470 421 FDIRSLEVCGSLRAT-GNRVASNWSRSCISPDESYVAAGS--ADGSVYIWSIS 470 (510)
Q Consensus 421 ~d~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~--~dg~i~iwd~~ 470 (510)
||+.++..+..+.++ ...+ ..+.++|..+++++++ .|+.+++|...
T Consensus 406 ~~~~s~~~~~~l~~h~~~~~----~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 406 WDSSSGGILQRLEGHSKAAV----SDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EeCCccchhhhhcCCCCCce----eccccCCCcCeeeecCcCCCceEEEecCC
Confidence 999998888888888 3333 3478999999999998 68899999754
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-34 Score=273.22 Aligned_cols=281 Identities=19% Similarity=0.355 Sum_probs=250.5
Q ss_pred eccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 010470 220 KINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG 299 (510)
Q Consensus 220 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 299 (510)
.|...+..|.+++|+|....++++-..|.|++||..-+.++..|..|.++|..++|+|.+.++++|+.|..|++|+..+.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence 45566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc-eeEEEEcCCCCEEEEecCCCcEEEE
Q 010470 300 RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLW 378 (510)
Q Consensus 300 ~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~dg~i~i~ 378 (510)
+++.++.+|-+.|..+.|++ .-..|+++|.|.+|+||+..+++++..+.+|.. |.|..|+|....+++++-|.+|++|
T Consensus 84 rclftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 84 RCLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred eehhhhccccceeEEeeccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence 99999999999999999999 888999999999999999999999999998865 9999999999999999999999999
Q ss_pred ECCCCc----------------------------eee-eecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCcee-
Q 010470 379 DIQTGK----------------------------LLS-EVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV- 428 (510)
Q Consensus 379 d~~~~~----------------------------~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~- 428 (510)
|+...+ .++ .+.+|. ..|+-++|+|.-.+|++|++|..|++|.+...+.
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD-RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW 241 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD-RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 241 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc-cccceEEecCCcceEEecCCcceeeEEEeccccce
Confidence 984211 111 223444 7899999999999999999999999999875432
Q ss_pred -eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeE
Q 010470 429 -CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVV 506 (510)
Q Consensus 429 -~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i 506 (510)
+.+.++|.+.+.+ +-|+|..++|++.|.|++|+|||+...+.+.+++...+..+.++-+|..+++++|-+.|.+
T Consensus 242 EvDtcrgH~nnVss----vlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~ 316 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVSS----VLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMI 316 (1202)
T ss_pred eehhhhcccCCcce----EEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceE
Confidence 3455677766655 8899999999999999999999999999999998888889999999999988877666654
No 52
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=3.4e-34 Score=246.35 Aligned_cols=275 Identities=25% Similarity=0.427 Sum_probs=236.0
Q ss_pred ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCC---EEEEEeCCCeEEEEEcCCC
Q 010470 223 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR---SVIAASSSNNLYVWDVNSG 299 (510)
Q Consensus 223 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~ 299 (510)
.|.+.|.++... ++.+++|+.||.+++||.. |+...++.+|.++|.+++|...+. .|++++.|.++++|..+.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 488999999887 7799999999999999986 888899999999999999865444 4999999999999998876
Q ss_pred Ce----eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC-------------------------CeEeeeeee
Q 010470 300 RV----RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK-------------------------GYCVNTIIF 350 (510)
Q Consensus 300 ~~----~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-------------------------~~~~~~~~~ 350 (510)
.. +..-.||...|-++...+ ++..+++|+.|.+|++|+..+ +.++-++.+
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 53 333459999999999998 899999999999999999321 124445555
Q ss_pred c-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCce--
Q 010470 351 H-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLE-- 427 (510)
Q Consensus 351 ~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~-- 427 (510)
| .+|.++.|++ ...+++++.|.+|+.||+.++.....+... ..++++.++|..++|++|+.|..+++||.+++.
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~--ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs 335 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN--KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGS 335 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC--cceeEeecccccceeeecCCCCceeecCCCCCCCc
Confidence 5 4589999986 778899999999999999999999888877 689999999999999999999999999999743
Q ss_pred -eeeEeecCCCeeecCceeEEEcCCCC-EEEEEcCCCeEEEEeCCCcc-eeecccccCcCEEEEEEeCCCCcEEEeeCCC
Q 010470 428 -VCGSLRATGNRVASNWSRSCISPDES-YVAAGSADGSVYIWSISKAD-IVRTLKEHTAPVLSCSWSGLGKPLASADKNG 504 (510)
Q Consensus 428 -~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 504 (510)
....+.+|.+.+.. +.|+|... .|++|+.||++++||+++.+ ++..+.+|...|.++.|+. +..+++||.|.
T Consensus 336 ~v~~s~~gH~nwVss----vkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~ 410 (423)
T KOG0313|consen 336 VVSQSLIGHKNWVSS----VKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADN 410 (423)
T ss_pred eeEEeeecchhhhhh----eecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcc
Confidence 45667777776554 89999655 58899999999999999877 9999999999999999975 56899999999
Q ss_pred eEEEc
Q 010470 505 VVCVW 509 (510)
Q Consensus 505 ~i~iw 509 (510)
+|+|+
T Consensus 411 ~l~i~ 415 (423)
T KOG0313|consen 411 KLRIF 415 (423)
T ss_pred eEEEe
Confidence 99987
No 53
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.1e-35 Score=275.10 Aligned_cols=249 Identities=21% Similarity=0.369 Sum_probs=214.8
Q ss_pred eeecc-ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC----------------------------------------
Q 010470 218 KHKIN-AHEGGCASILFEYNSARLISGGQDKSIKLWDTNT---------------------------------------- 256 (510)
Q Consensus 218 ~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~---------------------------------------- 256 (510)
...+. +|.|.|.++.||+||+|||+||.||.|+||.+..
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 34556 9999999999999999999999999999998643
Q ss_pred --------------------CcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEE
Q 010470 257 --------------------GSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVD 316 (510)
Q Consensus 257 --------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~ 316 (510)
.+++..+.||.+.|.++.|+. +++|++++.|.+|++|++....+++.|. |.+.|+||+
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVa 416 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVA 416 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEE
Confidence 012244679999999999995 5689999999999999999999999998 999999999
Q ss_pred EecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccc---
Q 010470 317 VSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS--- 393 (510)
Q Consensus 317 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--- 393 (510)
|+|.+.++|++|+-||.|+||++...+.+.....+.-|++++|.|||+..++|+.+|.+++|+....+....+..+.
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~ 496 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNK 496 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccC
Confidence 99999999999999999999999998888888888889999999999999999999999999998877665543221
Q ss_pred ----cccEEEEEEcCCCC-EEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEe
Q 010470 394 ----LAAVTSISLSRSGN-IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWS 468 (510)
Q Consensus 394 ----~~~i~~i~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd 468 (510)
...|+++.|.|... .+++.+.|..|+|||.+...++..|++..+... -....|+.||++|++++.|..|+||+
T Consensus 497 Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~S--Q~~Asfs~Dgk~IVs~seDs~VYiW~ 574 (712)
T KOG0283|consen 497 KKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSS--QISASFSSDGKHIVSASEDSWVYIWK 574 (712)
T ss_pred ccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCc--ceeeeEccCCCEEEEeecCceEEEEe
Confidence 14799999998543 588888999999999998888888887655433 23367899999999999999999999
Q ss_pred CC
Q 010470 469 IS 470 (510)
Q Consensus 469 ~~ 470 (510)
+.
T Consensus 575 ~~ 576 (712)
T KOG0283|consen 575 ND 576 (712)
T ss_pred CC
Confidence 74
No 54
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.5e-35 Score=250.44 Aligned_cols=262 Identities=27% Similarity=0.461 Sum_probs=224.0
Q ss_pred hHHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccc
Q 010470 186 LEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYG 265 (510)
Q Consensus 186 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 265 (510)
-+.+++|..|.++++|+... ..|...+.||+|.|.|+.|. .+.+++|++|.+|+|||+++|+++.++.+
T Consensus 207 D~kiVSGlrDnTikiWD~n~---------~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlih 275 (499)
T KOG0281|consen 207 DEKIVSGLRDNTIKIWDKNS---------LECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIH 275 (499)
T ss_pred chhhhcccccCceEEecccc---------HHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhh
Confidence 35678889999999999765 46889999999999999987 45999999999999999999999999999
Q ss_pred cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC---eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 010470 266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR---VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG 342 (510)
Q Consensus 266 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~ 342 (510)
|...|..+.|+ +.++++++.|.++.+||+.+.. +.+.+.||...|..+.|. .+++++++.|.+|++|++.++
T Consensus 276 HceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st~ 350 (499)
T KOG0281|consen 276 HCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTSTC 350 (499)
T ss_pred hcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEeccce
Confidence 99999999996 6789999999999999998765 456678999999999984 579999999999999999999
Q ss_pred eEeeeeeecC-ceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEE
Q 010470 343 YCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLF 421 (510)
Q Consensus 343 ~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~ 421 (510)
.+++++.+|. .|.|+.+ .|+++++|+.|.+|++||+..|.++..+.+|. .-|.++.|+ .+.+++|+.||+|++|
T Consensus 351 efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHE-eLvRciRFd--~krIVSGaYDGkikvW 425 (499)
T KOG0281|consen 351 EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE-ELVRCIRFD--NKRIVSGAYDGKIKVW 425 (499)
T ss_pred eeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchH-Hhhhheeec--CceeeeccccceEEEE
Confidence 9999998885 4777776 68999999999999999999999999999987 889999994 6789999999999999
Q ss_pred EcCCceeee---------EeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcce
Q 010470 422 DIRSLEVCG---------SLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADI 474 (510)
Q Consensus 422 d~~~~~~~~---------~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 474 (510)
|+..+.... .+..+.+.+ . .+..|...|++++.|.+|.|||..++-+
T Consensus 426 dl~aaldpra~~~~~Cl~~lv~hsgRV----F--rLQFD~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 426 DLQAALDPRAPASTLCLRTLVEHSGRV----F--RLQFDEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred ecccccCCcccccchHHHhhhhcccee----E--EEeecceEEEeccCCCeEEEEEcCCCCc
Confidence 998654321 111222222 2 2344677899999999999999887654
No 55
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3e-35 Score=251.29 Aligned_cols=280 Identities=17% Similarity=0.297 Sum_probs=237.4
Q ss_pred ceeeccccccceEEEEEecCC-CEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEE
Q 010470 217 CKHKINAHEGGCASILFEYNS-ARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD 295 (510)
Q Consensus 217 ~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 295 (510)
.+..+.||..+|.|++=+|.. ..+++|+.||.|+|||+.+..+..++..|.+.|..++++. ..+++++.|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 455678999999999999987 7899999999999999999999999999999999999986 6789999999999999
Q ss_pred cCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcCCC-CEEEEecCCC
Q 010470 296 VNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDG-QTIFSGHIDG 373 (510)
Q Consensus 296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~-~~l~~~~~dg 373 (510)
+.. .+.+++.+ ...+.++.-+. .++.++|||. .|.|||.....++..+.... .+.++.|+|.. ..|++|..|+
T Consensus 136 ~~~-~p~~tilg-~s~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDr 210 (433)
T KOG0268|consen 136 IDG-PPLHTILG-KSVYLGIDHHR-KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDR 210 (433)
T ss_pred ccC-Ccceeeec-ccccccccccc-ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCC
Confidence 774 56676653 45667777666 6778888874 69999999999999988764 49999999955 4566777999
Q ss_pred cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCc-eeeeEeecCCCeeecCceeEEEcCCC
Q 010470 374 NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL-EVCGSLRATGNRVASNWSRSCISPDE 452 (510)
Q Consensus 374 ~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~ 452 (510)
.|.+||++.+.++..+... ...+.|+|+|.+..+++++.|..++.||++.. .++.....|...+.. +.|||.|
T Consensus 211 sIvLyD~R~~~Pl~KVi~~--mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~d----VdfsptG 284 (433)
T KOG0268|consen 211 SIVLYDLRQASPLKKVILT--MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMD----VDFSPTG 284 (433)
T ss_pred ceEEEecccCCccceeeee--ccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEE----eccCCCc
Confidence 9999999999999888766 57788999998889999999999999999974 445555566555544 9999999
Q ss_pred CEEEEEcCCCeEEEEeCCCcceeecccc-cCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 453 SYVAAGSADGSVYIWSISKADIVRTLKE-HTAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 453 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
+-|++||.|.+|+||.+..+.....+.. -...|.++.||.|.+++++|++|+.|++|
T Consensus 285 ~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlW 342 (433)
T KOG0268|consen 285 QEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLW 342 (433)
T ss_pred chhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeee
Confidence 9999999999999999987765444321 24579999999999999999999999999
No 56
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-33 Score=226.70 Aligned_cols=241 Identities=21% Similarity=0.356 Sum_probs=215.7
Q ss_pred eecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 010470 260 SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDL 339 (510)
Q Consensus 260 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~ 339 (510)
...+..+.++|..+.|+-+|+|.++++.|.+|++|++..+.+++++.+|...|..++.+. ++..|++|+.|..+.+||+
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCCCceEEEEEc
Confidence 456778999999999999999999999999999999999999999999999999999988 7888999999999999999
Q ss_pred CCCeEeeeeeecC-ceeEEEEcCCCCEEEEecCCCcEEEEECCC--CceeeeecccccccEEEEEEcCCCCEEEEEecCC
Q 010470 340 HKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQT--GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDN 416 (510)
Q Consensus 340 ~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~ 416 (510)
.+|+.++.+..|. .|+.+.|+.+...+++|+.|..+++||.++ .++++.+.... ..|.+|.+. +..|++|+.||
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~-D~V~Si~v~--~heIvaGS~DG 165 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK-DGVSSIDVA--EHEIVAGSVDG 165 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc-CceeEEEec--ccEEEeeccCC
Confidence 9999999999884 599999999999999999999999999986 46777777665 788888875 67899999999
Q ss_pred cEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCE--EEEEEeCCC
Q 010470 417 LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPV--LSCSWSGLG 494 (510)
Q Consensus 417 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~ 494 (510)
+++.||++.+.....+ ...++++++|++||+...+++.|+++++.|-.+|+++..+++|.+.- ..++++...
T Consensus 166 tvRtydiR~G~l~sDy------~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsd 239 (307)
T KOG0316|consen 166 TVRTYDIRKGTLSSDY------FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSD 239 (307)
T ss_pred cEEEEEeecceeehhh------cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccc
Confidence 9999999998765433 23345669999999999999999999999999999999999997754 455777777
Q ss_pred CcEEEeeCCCeEEEcC
Q 010470 495 KPLASADKNGVVCVWT 510 (510)
Q Consensus 495 ~~l~s~~~dg~i~iwd 510 (510)
..+++|+.||.|++||
T Consensus 240 thV~sgSEDG~Vy~wd 255 (307)
T KOG0316|consen 240 THVFSGSEDGKVYFWD 255 (307)
T ss_pred eeEEeccCCceEEEEE
Confidence 8999999999999997
No 57
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.4e-33 Score=235.44 Aligned_cols=245 Identities=23% Similarity=0.441 Sum_probs=215.7
Q ss_pred ceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcC-CCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEE
Q 010470 259 LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVN-SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 337 (510)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iw 337 (510)
++..+.+|.+.|+.+.|+|+|.+|++|+.|..|.+|++. .-+....+++|.+.|..+.|.+ +++.+++++.|.+|+.|
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-DGSHILSCGTDKTVRGW 117 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc-CCCEEEEecCCceEEEE
Confidence 345577999999999999999999999999999999964 3446678889999999999999 89999999999999999
Q ss_pred ECCCCeEeeeeeecCc-eeEEEEcCCCC-EEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC
Q 010470 338 DLHKGYCVNTIIFHSN-CNALAFSMDGQ-TIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD 415 (510)
Q Consensus 338 d~~~~~~~~~~~~~~~-i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 415 (510)
|.++|++++.+..+.. ++++..+.-|. ++.+|+.||++++||+|+...++.+... ..++++.|...+..+++|+-|
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k--yqltAv~f~d~s~qv~sggId 195 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK--YQLTAVGFKDTSDQVISGGID 195 (338)
T ss_pred ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccc--eeEEEEEecccccceeecccc
Confidence 9999999999999877 56666443444 5558999999999999999988888665 789999999999999999999
Q ss_pred CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc----ceeecccccC----cCEEE
Q 010470 416 NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA----DIVRTLKEHT----APVLS 487 (510)
Q Consensus 416 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~----~~v~~ 487 (510)
+.|++||++.......+.+|..++.. +..+|+|.++.+-+.|.++++||+... .++..+.+|. .....
T Consensus 196 n~ikvWd~r~~d~~~~lsGh~DtIt~----lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~ 271 (338)
T KOG0265|consen 196 NDIKVWDLRKNDGLYTLSGHADTITG----LSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK 271 (338)
T ss_pred CceeeeccccCcceEEeecccCceee----EEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence 99999999999999999999988876 999999999999999999999998753 3466666643 23567
Q ss_pred EEEeCCCCcEEEeeCCCeEEEcC
Q 010470 488 CSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 488 ~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
++|+|++..+-+|+.|..+++||
T Consensus 272 cswsp~~~~i~ags~dr~vyvwd 294 (338)
T KOG0265|consen 272 CSWSPNGTKITAGSADRFVYVWD 294 (338)
T ss_pred eeccCCCCccccccccceEEEee
Confidence 89999999999999999999997
No 58
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.2e-34 Score=256.77 Aligned_cols=249 Identities=22% Similarity=0.380 Sum_probs=219.7
Q ss_pred CcceecccccccceeEEEEec-CCCEEEEEeCCCeEEEEEcCC-CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcE
Q 010470 257 GSLSSTLYGCLGSVLDLAITH-DNRSVIAASSSNNLYVWDVNS-GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTL 334 (510)
Q Consensus 257 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i 334 (510)
.+.+.++.+|...|+++.|.| .+.+|++++.|+.|+||++.. ++++++|.+|..+|.+++|++ .+..|+++|.|+.|
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFL 282 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeecceee
Confidence 455678899999999999999 899999999999999999976 889999999999999999999 89999999999999
Q ss_pred EEEECCCCeEeeeeeecCceeEEEEcCCC-CEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEe
Q 010470 335 KVWDLHKGYCVNTIIFHSNCNALAFSMDG-QTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG 413 (510)
Q Consensus 335 ~iwd~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 413 (510)
++||+++|+++..+.....++|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|- +.|..+.|-++|..+++++
T Consensus 283 KlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hL-g~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHL-GAILDITFVDEGRRFISSS 361 (503)
T ss_pred eeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhh-hheeeeEEccCCceEeeec
Confidence 99999999999999999999999999988 889999999999999999999998888776 9999999999999999999
Q ss_pred cCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc---ceeecccccCc--CEEEE
Q 010470 414 RDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA---DIVRTLKEHTA--PVLSC 488 (510)
Q Consensus 414 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~--~v~~~ 488 (510)
.|+.++||+.+....+........ ....++..+|++.++++-+.|+.|.+|.+... .....+.+|.. --..+
T Consensus 362 Ddks~riWe~~~~v~ik~i~~~~~---hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v 438 (503)
T KOG0282|consen 362 DDKSVRIWENRIPVPIKNIADPEM---HTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQV 438 (503)
T ss_pred cCccEEEEEcCCCccchhhcchhh---ccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeE
Confidence 999999999987666544432211 12234788999999999999999999997653 23455677753 45678
Q ss_pred EEeCCCCcEEEeeCCCeEEEcC
Q 010470 489 SWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 489 ~~~~~~~~l~s~~~dg~i~iwd 510 (510)
.|||||.+|++|+.||.+.+||
T Consensus 439 ~fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 439 DFSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred EEcCCCCeEEeecCCccEEEee
Confidence 9999999999999999999997
No 59
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.2e-32 Score=235.77 Aligned_cols=269 Identities=14% Similarity=0.229 Sum_probs=227.8
Q ss_pred chHHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc
Q 010470 185 GLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY 264 (510)
Q Consensus 185 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 264 (510)
.....++|..|..--+|..+. ......+.+|...|+|+.||.+|.+||||+.+|.|+||...++.....+.
T Consensus 75 ~~~l~aTGGgDD~AflW~~~~---------ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~ 145 (399)
T KOG0296|consen 75 NNNLVATGGGDDLAFLWDIST---------GEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD 145 (399)
T ss_pred CCceEEecCCCceEEEEEccC---------CcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee
Confidence 445567777777777777554 22567889999999999999999999999999999999999999888887
Q ss_pred ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 010470 265 GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC 344 (510)
Q Consensus 265 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 344 (510)
.....+.-+.|+|.+..|++|+.||.+.+|.+.++...+.+.+|..++++-.|.| +++.++++..||+|++||+.++.+
T Consensus 146 ~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg~p 224 (399)
T KOG0296|consen 146 QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTGQP 224 (399)
T ss_pred cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccC-CCceEEEEecCceEEEEecCCCce
Confidence 6777888899999999999999999999999999889999999999999999999 799999999999999999999987
Q ss_pred eeeeeecC--c--------------------------------------------------eeEEEEcC---CCCEEEEe
Q 010470 345 VNTIIFHS--N--------------------------------------------------CNALAFSM---DGQTIFSG 369 (510)
Q Consensus 345 ~~~~~~~~--~--------------------------------------------------i~~i~~~~---~~~~l~~~ 369 (510)
+..+.... . +.|+.+.| .=.+.++|
T Consensus 225 ~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G 304 (399)
T KOG0296|consen 225 LHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACG 304 (399)
T ss_pred eEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcc
Confidence 76654100 0 01111111 12346788
Q ss_pred cCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEc
Q 010470 370 HIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCIS 449 (510)
Q Consensus 370 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s 449 (510)
+-||+|.|||+...++....... .+|..+.|.+ ..+|++++.+|.|+.||.|+++....+.+|...+.. ++++
T Consensus 305 ~vdG~i~iyD~a~~~~R~~c~he--~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~----f~ls 377 (399)
T KOG0296|consen 305 SVDGTIAIYDLAASTLRHICEHE--DGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILD----FALS 377 (399)
T ss_pred cccceEEEEecccchhheeccCC--CceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeE----EEEc
Confidence 99999999998777655554433 7899999999 889999999999999999999999999999988876 8899
Q ss_pred CCCCEEEEEcCCCeEEEEeCC
Q 010470 450 PDESYVAAGSADGSVYIWSIS 470 (510)
Q Consensus 450 ~~~~~l~~~~~dg~i~iwd~~ 470 (510)
|++++++++|.|++.+||++.
T Consensus 378 ~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 378 PQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999864
No 60
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.2e-32 Score=225.09 Aligned_cols=269 Identities=22% Similarity=0.344 Sum_probs=219.7
Q ss_pred HhhhhcCCceEEecccccccccccCCCccceeec-cccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCC--cceeccc
Q 010470 188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKI-NAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG--SLSSTLY 264 (510)
Q Consensus 188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~ 264 (510)
.+++++.|..+++|+... .-...|+..+ .+|+..|.+++|+|.|++|++||.|.++.||.-..+ +++.++.
T Consensus 29 ilAscg~Dk~vriw~~~~------~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lE 102 (312)
T KOG0645|consen 29 ILASCGTDKAVRIWSTSS------GDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLE 102 (312)
T ss_pred EEEeecCCceEEEEecCC------CCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeee
Confidence 477889999999998663 1124466555 479999999999999999999999999999987654 5688899
Q ss_pred ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC---CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECC-
Q 010470 265 GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG---RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH- 340 (510)
Q Consensus 265 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~- 340 (510)
||...|.+++|+++|++|++++.|+.|.||.+..+ .+...++.|...|..+.|+| ...+|+++|+|++|++|.-.
T Consensus 103 GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~ 181 (312)
T KOG0645|consen 103 GHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDED 181 (312)
T ss_pred ccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecC
Confidence 99999999999999999999999999999998754 37788999999999999999 88999999999999999876
Q ss_pred --CCeEeeeeeecC-ceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCc
Q 010470 341 --KGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNL 417 (510)
Q Consensus 341 --~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~ 417 (510)
.-.+++++..+. .+.+++|+|.|..+++++.|++++||-.. ..+...+...+..+.|. ...|++++.|+.
T Consensus 182 dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~-----~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~ 254 (312)
T KOG0645|consen 182 DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY-----TDLSGMHSRALYDVPWD--NGVIASGGGDDA 254 (312)
T ss_pred CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec-----cCcchhcccceEeeeec--ccceEeccCCCE
Confidence 235788887775 69999999999999999999999999865 23333344788889998 678999999999
Q ss_pred EEEEEcCCceeeeE---eecCCCeeecCceeEEEcCC-CCEEEEEcCCCeEEEEeCC
Q 010470 418 HNLFDIRSLEVCGS---LRATGNRVASNWSRSCISPD-ESYVAAGSADGSVYIWSIS 470 (510)
Q Consensus 418 i~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~i~iwd~~ 470 (510)
|++|.-.....-.. +..........++++.|.|. .+.|++|++||.|++|.+.
T Consensus 255 i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 255 IRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 99997654211111 11111222235667999994 7899999999999999864
No 61
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.3e-32 Score=240.88 Aligned_cols=278 Identities=19% Similarity=0.334 Sum_probs=235.2
Q ss_pred eeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcce----ec-------------c-cccccceeEEEEecCC
Q 010470 218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLS----ST-------------L-YGCLGSVLDLAITHDN 279 (510)
Q Consensus 218 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~----~~-------------~-~~~~~~v~~~~~~~~~ 279 (510)
...+..|.-+|.||+++|++++.++++.+|+|.-|++.+++.. .. - .+|...+.+++.+|||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 4567789999999999999999999999999999999887632 11 1 2678889999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEE
Q 010470 280 RSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALA 358 (510)
Q Consensus 280 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~ 358 (510)
+||++|+.|..|.||+..+.+.++.+.+|.+.|.+++|-. +.+.+++++.|++|++|++.....+.++.+|. .|.++.
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 9999999999999999999999999999999999999987 78889999999999999998877777777664 588888
Q ss_pred EcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCe
Q 010470 359 FSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNR 438 (510)
Q Consensus 359 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 438 (510)
...-++.+.+|+.|+++++|++..... ..+.++. +.+.|++|-. ...+++|+.+|.|.+|++.+.+++.+.......
T Consensus 294 aL~reR~vtVGgrDrT~rlwKi~eesq-lifrg~~-~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv 370 (479)
T KOG0299|consen 294 ALSRERCVTVGGRDRTVRLWKIPEESQ-LIFRGGE-GSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGV 370 (479)
T ss_pred hhcccceEEeccccceeEEEeccccce-eeeeCCC-CCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccccc
Confidence 887888888899999999999944332 3344443 7899999975 467899999999999999999988887644433
Q ss_pred eec--------CceeEEEcCCCCEEEEEcCCCeEEEEeCCCc----ceeecccccCcCEEEEEEeCCCCcEEEe
Q 010470 439 VAS--------NWSRSCISPDESYVAAGSADGSVYIWSISKA----DIVRTLKEHTAPVLSCSWSGLGKPLASA 500 (510)
Q Consensus 439 ~~~--------~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 500 (510)
... .++.++..|..+++++|+.+|.|++|-+..+ .++..++ -.+.|++++|+++|+.+++|
T Consensus 371 ~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 371 IPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred cCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEe
Confidence 332 6788999999999999999999999998877 4455555 56789999999999966554
No 62
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.3e-33 Score=254.03 Aligned_cols=262 Identities=21% Similarity=0.285 Sum_probs=229.9
Q ss_pred hhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccc
Q 010470 190 AKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGS 269 (510)
Q Consensus 190 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 269 (510)
..+-..|.+.+|+... ...+..+.--.-||.+..|-+..+.+++|+.|..|+||+.+++..+..+..|...
T Consensus 29 la~LynG~V~IWnyet---------qtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~Dy 99 (794)
T KOG0276|consen 29 LAALYNGDVQIWNYET---------QTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDY 99 (794)
T ss_pred EEeeecCeeEEEeccc---------ceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccc
Confidence 3445678888888554 2355667777789999999999999999999999999999999999999999999
Q ss_pred eeEEEEecCCCEEEEEeCCCeEEEEEcCCC-CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee
Q 010470 270 VLDLAITHDNRSVIAASSSNNLYVWDVNSG-RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI 348 (510)
Q Consensus 270 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 348 (510)
|.+++.+|...+++++|.|-.|++||.+.+ .+.++|.+|...|.+++|+|.+.+.+++++-|++|+||.+.+..+..++
T Consensus 100 IR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl 179 (794)
T KOG0276|consen 100 IRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTL 179 (794)
T ss_pred eeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceee
Confidence 999999999999999999999999998754 5888999999999999999999999999999999999999999999999
Q ss_pred eecC-ceeEEEEcCC--CCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC
Q 010470 349 IFHS-NCNALAFSMD--GQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS 425 (510)
Q Consensus 349 ~~~~-~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~ 425 (510)
.+|. .|+|+++-+. ..++++|+.|..|+|||..+..++.++.+|. ..|..+.|+|.-.++++|+.||+++||...+
T Consensus 180 ~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt-~Nvs~v~fhp~lpiiisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 180 EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHT-NNVSFVFFHPELPIIISGSEDGTVRIWNSKT 258 (794)
T ss_pred eccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccc-ccceEEEecCCCcEEEEecCCccEEEecCcc
Confidence 8874 5999999874 4699999999999999999999999999998 8999999999999999999999999999988
Q ss_pred ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEE
Q 010470 426 LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVY 465 (510)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~ 465 (510)
.+...++......+. +++-.+.++.+++|.++|.|.
T Consensus 259 y~lE~tLn~gleRvW----~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 259 YKLEKTLNYGLERVW----CIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred eehhhhhhcCCceEE----EEeecCCCCeEEEeccCCcEE
Confidence 877666655554443 366667777777777777544
No 63
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=8.9e-32 Score=247.95 Aligned_cols=267 Identities=34% Similarity=0.581 Sum_probs=234.4
Q ss_pred HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc
Q 010470 187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC 266 (510)
Q Consensus 187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 266 (510)
..++.+..+|.+.+|+... ......+.+|...+.++.|+|+++++++++.||.|++|++.+++....+..|
T Consensus 22 ~~l~~~~~~g~i~i~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~ 92 (289)
T cd00200 22 KLLATGSGDGTIKVWDLET---------GELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGH 92 (289)
T ss_pred CEEEEeecCcEEEEEEeeC---------CCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEecc
Confidence 3455666788888887543 1255677889999999999999999999999999999999988888888899
Q ss_pred ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEee
Q 010470 267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN 346 (510)
Q Consensus 267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 346 (510)
...+.++.|+|++.++++++.+|.|.+||+.+++....+..|...+.++.|+| ++.++++++.+|.|.+||+++++.+.
T Consensus 93 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~ 171 (289)
T cd00200 93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVA 171 (289)
T ss_pred CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEccccccce
Confidence 99999999999988888888899999999998888888989999999999999 67888888889999999999888888
Q ss_pred eeeecC-ceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC
Q 010470 347 TIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS 425 (510)
Q Consensus 347 ~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~ 425 (510)
.+..+. .+.++.|+|+++.+++++.+|.|.+||++.++.+..+..+. ..+.++.|+|++.++++++.+|.+++||+.+
T Consensus 172 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 172 TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE-NGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred eEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC-CceEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence 887665 69999999999999999999999999999988888876665 7999999999988998888899999999998
Q ss_pred ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEe
Q 010470 426 LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWS 468 (510)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd 468 (510)
+.....+..+...+ ..++|+|++.+|++++.||.|++|+
T Consensus 251 ~~~~~~~~~~~~~i----~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 251 GECVQTLSGHTNSV----TSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ceeEEEccccCCcE----EEEEECCCCCEEEEecCCCeEEecC
Confidence 88888877555444 4599999999999999999999996
No 64
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.7e-32 Score=227.08 Aligned_cols=275 Identities=16% Similarity=0.280 Sum_probs=228.9
Q ss_pred cccccceEEEEEec-CCCEEEEeeCCCeEEEEeCCC-Ccc-eecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 010470 222 NAHEGGCASILFEY-NSARLISGGQDKSIKLWDTNT-GSL-SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS 298 (510)
Q Consensus 222 ~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~-~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 298 (510)
....+.|.+++||| ...+++.||.||+|++|+++. |.. .+....|.++|.+++|+.||..+++|+.|+.+++||+.+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 34567899999999 555667999999999999976 343 344568999999999999999999999999999999999
Q ss_pred CCeeEeecCCCCceEEEEEecCCCC--EEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEE
Q 010470 299 GRVRHTLTGHTDKVCAVDVSKISSR--HVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLR 376 (510)
Q Consensus 299 ~~~~~~~~~~~~~v~~i~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~ 376 (510)
++ ...+..|.++|.++.|.+ ... .|++||.|.+|+.||++...++.++..+..+.++.+- ..+++++..+..|.
T Consensus 104 ~Q-~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~--~pm~vVata~r~i~ 179 (347)
T KOG0647|consen 104 GQ-VSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL--YPMAVVATAERHIA 179 (347)
T ss_pred CC-eeeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc--CceeEEEecCCcEE
Confidence 95 455667999999999987 444 7999999999999999999999999999988888764 56788888999999
Q ss_pred EEECCCCcee-eeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCc--eeeeEeecCCCee-----ecCceeEEE
Q 010470 377 LWDIQTGKLL-SEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL--EVCGSLRATGNRV-----ASNWSRSCI 448 (510)
Q Consensus 377 i~d~~~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~-----~~~~~~~~~ 448 (510)
+|+++++... .....+-.-.++||+..++....+.|+-+|.+.|..+..+ ..-.+|+.|.... ...++.++|
T Consensus 180 vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~F 259 (347)
T KOG0647|consen 180 VYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAF 259 (347)
T ss_pred EEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEe
Confidence 9999766433 3333333467999999999998899999999999988775 4445555554311 234677999
Q ss_pred cCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEe
Q 010470 449 SPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASA 500 (510)
Q Consensus 449 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 500 (510)
+|.-..|++.+.||++.+||-.....+.+...|..+|++++|+.+|.+++.+
T Consensus 260 hP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 260 HPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 9999999999999999999988888888888899999999999999987754
No 65
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-32 Score=259.16 Aligned_cols=266 Identities=23% Similarity=0.389 Sum_probs=228.7
Q ss_pred hhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccccc
Q 010470 189 LAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLG 268 (510)
Q Consensus 189 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 268 (510)
+.++-..|.|..|+-.. ..++..|..|.|+|.+++|+|.+.++++||+|-.|+||+..+.+++.++.||-.
T Consensus 24 ILtslHsG~IQlWDYRM---------~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlD 94 (1202)
T KOG0292|consen 24 ILTSLHSGVIQLWDYRM---------GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLD 94 (1202)
T ss_pred EEEeecCceeeeehhhh---------hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccc
Confidence 44555678888998544 458889999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe-----
Q 010470 269 SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY----- 343 (510)
Q Consensus 269 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~----- 343 (510)
.|..+.|++.-..++++|.|.+|+||+..+++++..+.||...|.|..|+| ....++++|-|.+|+|||+..-+
T Consensus 95 YVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~ 173 (1202)
T KOG0292|consen 95 YVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKA 173 (1202)
T ss_pred eeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCC
Confidence 999999999999999999999999999999999999999999999999999 78899999999999999985210
Q ss_pred ------------------------Eeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCce--eeeeccccccc
Q 010470 344 ------------------------CVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL--LSEVAAHSLAA 396 (510)
Q Consensus 344 ------------------------~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~ 396 (510)
....+.+| ..|+-++|+|.-..|++|+.|..|++|.+...+. +.+..+|. ..
T Consensus 174 pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~-nn 252 (1202)
T KOG0292|consen 174 PGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHY-NN 252 (1202)
T ss_pred CCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhccc-CC
Confidence 01122233 3489999999999999999999999999865442 33445665 89
Q ss_pred EEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470 397 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS 470 (510)
Q Consensus 397 i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 470 (510)
|.++-|+|..+++++.+.|+.|+|||+.+...+++++........ ++.+|..+++++|-+.| +.||.+.
T Consensus 253 Vssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~----laahP~lNLfAAgHDsG-m~VFkle 321 (1202)
T KOG0292|consen 253 VSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWI----LAAHPELNLFAAGHDSG-MIVFKLE 321 (1202)
T ss_pred cceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEE----EEecCCcceeeeecCCc-eEEEEEc
Confidence 999999999999999999999999999999999999877665543 88899999998887655 5555544
No 66
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.5e-33 Score=229.14 Aligned_cols=253 Identities=25% Similarity=0.385 Sum_probs=229.7
Q ss_pred CccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEE
Q 010470 214 PSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYV 293 (510)
Q Consensus 214 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 293 (510)
...-+.+|.||.|.|.+..++.+...-++++.|-+-+|||.-+|..+.++ .|..-|..++|+.|.++|++|+.+..++|
T Consensus 48 tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrv 126 (334)
T KOG0278|consen 48 TGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRV 126 (334)
T ss_pred CCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhh
Confidence 34567899999999999999999999999999999999999999998887 47889999999999999999999999999
Q ss_pred EEcCCCC-eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCC
Q 010470 294 WDVNSGR-VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHID 372 (510)
Q Consensus 294 wd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 372 (510)
||++..+ +...+.+|.+.|..+.|.. ..+.|++++.|++|++||.+++..++++..+++++++.++++|++|.++. .
T Consensus 127 fdln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-g 204 (334)
T KOG0278|consen 127 FDLNRPKAPPKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-G 204 (334)
T ss_pred hhccCCCCCchhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-C
Confidence 9998765 6778899999999999998 77888888999999999999999999999999999999999999887765 4
Q ss_pred CcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEe-ecCCCeeecCceeEEEcCC
Q 010470 373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL-RATGNRVASNWSRSCISPD 451 (510)
Q Consensus 373 g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~ 451 (510)
+.|.+||..+...++.+..+ ..|.+..++|+...+++|+.|..++.||..++..+..+ .+|..++.+ +.|+|+
T Consensus 205 ssV~Fwdaksf~~lKs~k~P--~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhc----VrFSPd 278 (334)
T KOG0278|consen 205 SSVKFWDAKSFGLLKSYKMP--CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHC----VRFSPD 278 (334)
T ss_pred ceeEEeccccccceeeccCc--cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEE----EEECCC
Confidence 67999999999999998877 78999999999999999999999999999999988885 666666654 999999
Q ss_pred CCEEEEEcCCCeEEEEeCCCccee
Q 010470 452 ESYVAAGSADGSVYIWSISKADIV 475 (510)
Q Consensus 452 ~~~l~~~~~dg~i~iwd~~~~~~~ 475 (510)
|...++||.||+|++|.+..++..
T Consensus 279 GE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 279 GELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CceeeccCCCceEEEEEecCCCch
Confidence 999999999999999998766543
No 67
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.3e-32 Score=235.09 Aligned_cols=278 Identities=24% Similarity=0.376 Sum_probs=234.1
Q ss_pred HHHHHHHhhhcchHHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCC---CEEEEeeCCCeEE
Q 010470 174 YEDMIDRLKASGLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNS---ARLISGGQDKSIK 250 (510)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~~~dg~i~ 250 (510)
+.+.+..++.. ..-+.+++.||.+++|+.. .++.+.+.||.++|.+++|-... ..|+++|.|.+++
T Consensus 104 hdDWVSsv~~~-~~~IltgsYDg~~riWd~~----------Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~ 172 (423)
T KOG0313|consen 104 HDDWVSSVKGA-SKWILTGSYDGTSRIWDLK----------GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLR 172 (423)
T ss_pred chhhhhhhccc-CceEEEeecCCeeEEEecC----------CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEE
Confidence 44555555543 4567899999999999944 45889999999999988885433 3599999999999
Q ss_pred EEeCCCCcc----eecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC-------------------------CCe
Q 010470 251 LWDTNTGSL----SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS-------------------------GRV 301 (510)
Q Consensus 251 iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-------------------------~~~ 301 (510)
+|..+.+.. +....||...|-++...++|..+++|+.|.+|.||+..+ +.+
T Consensus 173 Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P 252 (423)
T KOG0313|consen 173 LWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTP 252 (423)
T ss_pred EEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCc
Confidence 999887654 334459999999999999999999999999999999321 235
Q ss_pred eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECC
Q 010470 302 RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQ 381 (510)
Q Consensus 302 ~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~ 381 (510)
+.++.+|..+|.++.|++ ...+++++.|.+|+.||+.++..+..+..+...+|+.++|..+.|++|+.|..|++||.+
T Consensus 253 ~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR 330 (423)
T KOG0313|consen 253 LVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPR 330 (423)
T ss_pred eEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCC
Confidence 667889999999999986 788999999999999999999999999999999999999999999999999999999998
Q ss_pred CCc---eeeeecccccccEEEEEEcCCC-CEEEEEecCCcEEEEEcCCce-eeeEeecCCCeeecCceeEEEcCCCCEEE
Q 010470 382 TGK---LLSEVAAHSLAAVTSISLSRSG-NIILTSGRDNLHNLFDIRSLE-VCGSLRATGNRVASNWSRSCISPDESYVA 456 (510)
Q Consensus 382 ~~~---~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 456 (510)
++. ....+.+|. ..|.++.|+|.. ..|++++.|+++++||+|+.. ++..+.+|...+.+ +.|. ++.+|+
T Consensus 331 ~~~gs~v~~s~~gH~-nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~----vdW~-~~~~Iv 404 (423)
T KOG0313|consen 331 TGDGSVVSQSLIGHK-NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLS----VDWN-EGGLIV 404 (423)
T ss_pred CCCCceeEEeeecch-hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEE----Eecc-CCceEE
Confidence 753 345666676 799999999965 468889999999999999876 88888888777754 5554 577999
Q ss_pred EEcCCCeEEEEeCC
Q 010470 457 AGSADGSVYIWSIS 470 (510)
Q Consensus 457 ~~~~dg~i~iwd~~ 470 (510)
+|+.|.+|+|+...
T Consensus 405 SGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 405 SGGADNKLRIFKGS 418 (423)
T ss_pred eccCcceEEEeccc
Confidence 99999999999743
No 68
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-32 Score=224.48 Aligned_cols=277 Identities=26% Similarity=0.387 Sum_probs=226.8
Q ss_pred EEEEEecC-CCEEEEee-------CCCeEEEEeCCCCcceeccc--ccccceeEEEEecCC-CEEEEEeCCCeEEEEEcC
Q 010470 229 ASILFEYN-SARLISGG-------QDKSIKLWDTNTGSLSSTLY--GCLGSVLDLAITHDN-RSVIAASSSNNLYVWDVN 297 (510)
Q Consensus 229 ~~~~~s~~-~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~ 297 (510)
.++.|||- .++|+++. ..|++.|.++...+-+..+. .-...+.+++|+++. +.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 56788882 23443332 36889999986444333332 346789999999864 578889999999999965
Q ss_pred C-CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc-eeEEEEcC-CCCEEEEecCCCc
Q 010470 298 S-GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSM-DGQTIFSGHIDGN 374 (510)
Q Consensus 298 ~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-i~~i~~~~-~~~~l~~~~~dg~ 374 (510)
. ..+++.++.|...|.++.|++.....++++|.|++|++|+...+..+.++.++.. |....|+| .++.+++++.||.
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 3 3588999999999999999998888999999999999999999999999988765 89999999 6789999999999
Q ss_pred EEEEECCCCceeeeecccccccEEEEEEcC-CCCEEEEEecCCcEEEEEcCCc-eeeeEeecCCCeeecCceeEEEcCC-
Q 010470 375 LRLWDIQTGKLLSEVAAHSLAAVTSISLSR-SGNIILTSGRDNLHNLFDIRSL-EVCGSLRATGNRVASNWSRSCISPD- 451 (510)
Q Consensus 375 i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~- 451 (510)
+++||++..-....+..|. ..+.++.|+. +.+.+++|+.|+.|++||+++. .++..+.+|...+.. +.|||.
T Consensus 172 l~lwdvr~~gk~~~i~ah~-~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRk----vk~Sph~ 246 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHN-SEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRK----VKFSPHH 246 (311)
T ss_pred EEEEEecCCCceeEEEecc-ceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEE----EecCcch
Confidence 9999998755555587776 8999999997 5568899999999999999974 445666666666554 899995
Q ss_pred CCEEEEEcCCCeEEEEeCCC-cceeecccccCcCEEEEEEeCC-CCcEEEeeCCCeEEEcC
Q 010470 452 ESYVAAGSADGSVYIWSISK-ADIVRTLKEHTAPVLSCSWSGL-GKPLASADKNGVVCVWT 510 (510)
Q Consensus 452 ~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd 510 (510)
...|++++.|-+++|||... ...+.+...|+.-|.++.|++- +.++++++.|+.++||+
T Consensus 247 ~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 247 ASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred hhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 56799999999999999875 4556677789999999999975 45899999999999996
No 69
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=3.7e-32 Score=261.04 Aligned_cols=270 Identities=27% Similarity=0.532 Sum_probs=246.7
Q ss_pred cccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceec-ccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCee
Q 010470 224 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSST-LYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR 302 (510)
Q Consensus 224 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 302 (510)
|...+.+..|. +.++++++.|++|.+||..++..+.. +.+|.+.|+++++..-+.++++|+.|.++++||..+|.+.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 56678899888 56999999999999999999998888 9999999999999887899999999999999999999999
Q ss_pred EeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee-ecCceeEEEEcCCCCEEEEecCCCcEEEEECC
Q 010470 303 HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII-FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQ 381 (510)
Q Consensus 303 ~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~ 381 (510)
+.+.+|.+.|.++... +..+++|+.|.+|++|++.++.++..+. +...|+++.++ +.++++|+.||.|.+||+.
T Consensus 285 ~~l~gh~stv~~~~~~---~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~ 359 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTID---PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR 359 (537)
T ss_pred EEecCCCceEEEEEcc---CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh
Confidence 9999999999999874 4788899999999999999999999999 45679999986 8999999999999999999
Q ss_pred CCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCc-eeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC
Q 010470 382 TGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL-EVCGSLRATGNRVASNWSRSCISPDESYVAAGSA 460 (510)
Q Consensus 382 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 460 (510)
+++++..+.+|. ..|.++.+.+. ..+++|+.|+.|++||+++. +.+..+.+|...+. .+...+++|++++.
T Consensus 360 ~~~cl~sl~gH~-~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~------~l~~~~~~Lvs~~a 431 (537)
T KOG0274|consen 360 TGKCLKSLSGHT-GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVS------SLLLRDNFLVSSSA 431 (537)
T ss_pred hceeeeeecCCc-ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccc------ccccccceeEeccc
Confidence 999999999987 99999988766 89999999999999999999 88888888877763 35667899999999
Q ss_pred CCeEEEEeCCCcceeecccc-cCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 461 DGSVYIWSISKADIVRTLKE-HTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 461 dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
||+|++||..+++++..+.+ |.+.|..+++. ...+++++.||.+++||
T Consensus 432 D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 432 DGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred cccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 99999999999999999998 67889988886 45789999999999997
No 70
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=1.9e-31 Score=256.09 Aligned_cols=267 Identities=20% Similarity=0.307 Sum_probs=210.7
Q ss_pred cccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc----------e---ecccccccceeEEEEec-CCCEEEEEeCCC
Q 010470 224 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL----------S---STLYGCLGSVLDLAITH-DNRSVIAASSSN 289 (510)
Q Consensus 224 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~----------~---~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~ 289 (510)
|-..|....+++++..+++++.+.....|+...+.. . ..+.+|.+.|++++|+| ++++|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 344566666777777777777777777776543321 1 23678999999999999 889999999999
Q ss_pred eEEEEEcCCC-------CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcC
Q 010470 290 NLYVWDVNSG-------RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSM 361 (510)
Q Consensus 290 ~i~iwd~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~ 361 (510)
+|++||+.++ .++..+.+|...|.+++|+|..+++|++++.|+.|++||+.++..+..+..+ ..|.+++|+|
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence 9999999765 3567889999999999999955689999999999999999999988888765 4599999999
Q ss_pred CCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEe----cCCcEEEEEcCCcee-eeEeecCC
Q 010470 362 DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG----RDNLHNLFDIRSLEV-CGSLRATG 436 (510)
Q Consensus 362 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~----~d~~i~i~d~~~~~~-~~~~~~~~ 436 (510)
+|.+|++|+.||.|++||+++++.+..+..|....+..+.|.+++..+++++ .|+.|++||+++... ......+.
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~ 258 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQ 258 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCC
Confidence 9999999999999999999999998888877644556788999888887754 478999999987543 22222221
Q ss_pred CeeecCceeEEEcCCCCEEEEEc-CCCeEEEEeCCCcceeecccc-cCcCEEEEEEeCC
Q 010470 437 NRVASNWSRSCISPDESYVAAGS-ADGSVYIWSISKADIVRTLKE-HTAPVLSCSWSGL 493 (510)
Q Consensus 437 ~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~ 493 (510)
. ..+....|++++++|++|+ .||.|++||+.+++++..... +..++.+++|.|.
T Consensus 259 ~---~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 259 S---SALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred C---CceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 1 1223357899999999887 599999999999887766543 4556788888875
No 71
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.4e-30 Score=270.57 Aligned_cols=257 Identities=18% Similarity=0.285 Sum_probs=215.4
Q ss_pred CCeEEEEeCCCCccee-----cccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC----C----eeEeecCCCCce
Q 010470 246 DKSIKLWDTNTGSLSS-----TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG----R----VRHTLTGHTDKV 312 (510)
Q Consensus 246 dg~i~iwd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~----~~~~~~~~~~~v 312 (510)
+|.+++|+..+..... .+..|.+.|.+++|+|+++++++|+.|+.|+||++... . +...+. +...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 6778888877654432 24468999999999999999999999999999997532 1 222333 35679
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcC-CCCEEEEecCCCcEEEEECCCCceeeeec
Q 010470 313 CAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSM-DGQTIFSGHIDGNLRLWDIQTGKLLSEVA 390 (510)
Q Consensus 313 ~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 390 (510)
.+++|+|..+.+|++++.||+|++||+.+++.+..+..| ..|.+++|+| ++.+|++|+.||.|++||++++..+..+.
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK 615 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 999999867889999999999999999999988888766 4599999997 78999999999999999999998888776
Q ss_pred ccccccEEEEEEc-CCCCEEEEEecCCcEEEEEcCCce-eeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEe
Q 010470 391 AHSLAAVTSISLS-RSGNIILTSGRDNLHNLFDIRSLE-VCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWS 468 (510)
Q Consensus 391 ~~~~~~i~~i~~~-~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd 468 (510)
.+ ..+.++.|+ ++|.+|++|+.||.|++||+++.. ....+.+|...+. .+.|. ++.+|++++.|++|++||
T Consensus 616 ~~--~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~----~v~f~-~~~~lvs~s~D~~ikiWd 688 (793)
T PLN00181 616 TK--ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVS----YVRFV-DSSTLVSSSTDNTLKLWD 688 (793)
T ss_pred cC--CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEE----EEEEe-CCCEEEEEECCCEEEEEe
Confidence 54 679999995 579999999999999999998765 4555556655444 47786 788999999999999999
Q ss_pred CCC------cceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 469 ISK------ADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 469 ~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+.. ..++..+.+|...+..++|+|++.+|++|+.||.|++|+
T Consensus 689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 689 LSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred CCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 874 356778889999999999999999999999999999996
No 72
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.6e-32 Score=240.86 Aligned_cols=275 Identities=22% Similarity=0.332 Sum_probs=232.8
Q ss_pred ccceEEEEEecCCC-EEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeE
Q 010470 225 EGGCASILFEYNSA-RLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH 303 (510)
Q Consensus 225 ~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 303 (510)
.+.|++++|+|... -+|+.+ .-.+.||+..+.....++......|.+++|..||+++++|+..|.|+|||..+...+.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR 104 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR 104 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH
Confidence 35799999999544 355544 3579999999888888888888999999999999999999999999999977766788
Q ss_pred eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc-eeEEEEcCC-CCEEEEecCCCcEEEEECC
Q 010470 304 TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMD-GQTIFSGHIDGNLRLWDIQ 381 (510)
Q Consensus 304 ~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-i~~i~~~~~-~~~l~~~~~dg~i~i~d~~ 381 (510)
.+.+|..+|..+.|+|.++..+++|+.|+.+++||+.+......+..+.. |.|.+|+|- +..+++|+.||.|++||++
T Consensus 105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR 184 (487)
T KOG0310|consen 105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTR 184 (487)
T ss_pred HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence 89999999999999998999999999999999999998887556666644 999999994 5588899999999999999
Q ss_pred CC-ceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCce-eeeEeecCCCeeecCceeEEEcCCCCEEEEEc
Q 010470 382 TG-KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLE-VCGSLRATGNRVASNWSRSCISPDESYVAAGS 459 (510)
Q Consensus 382 ~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 459 (510)
.. ..+..+.. ..+|.++.+-|.|..+++++. +.+++||+-+|. .+..+..|...+. |+++..++..|++|+
T Consensus 185 ~~~~~v~elnh--g~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVT----cL~l~s~~~rLlS~s 257 (487)
T KOG0310|consen 185 SLTSRVVELNH--GCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVT----CLRLASDSTRLLSGS 257 (487)
T ss_pred cCCceeEEecC--CCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEE----EEEeecCCceEeecc
Confidence 87 44444443 389999999999999998864 589999998554 4444433555554 599999999999999
Q ss_pred CCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEE
Q 010470 460 ADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCV 508 (510)
Q Consensus 460 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i 508 (510)
-||.|++||+.+.+.+..+. ..++|.+++.+|++..++.|..||.+.+
T Consensus 258 LD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 258 LDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred cccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeee
Confidence 99999999999999998887 5789999999999999999999998754
No 73
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=8.9e-31 Score=229.09 Aligned_cols=250 Identities=18% Similarity=0.271 Sum_probs=218.8
Q ss_pred ccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEE
Q 010470 215 STCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVW 294 (510)
Q Consensus 215 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 294 (510)
.+...+|+||...|+.+.|+|+...+++++.|..|+||.............|..+|+.+..+|.|.||++++.||+..+.
T Consensus 251 ~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fs 330 (506)
T KOG0289|consen 251 NQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFS 330 (506)
T ss_pred hhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEE
Confidence 45677899999999999999999999999999999999998888888889999999999999999999999999999999
Q ss_pred EcCCCCeeEeecC--CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecC
Q 010470 295 DVNSGRVRHTLTG--HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHI 371 (510)
Q Consensus 295 d~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~ 371 (510)
|+.++..+..... ..-.+++..|+| ++.+|.+|..||.|+|||+.++..+..|.+| ++|..++|+.+|-++++++.
T Consensus 331 d~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad 409 (506)
T KOG0289|consen 331 DISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD 409 (506)
T ss_pred EccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec
Confidence 9999998776653 224589999999 9999999999999999999999988888887 45999999999999999999
Q ss_pred CCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC--CceeeeEeecCCCeeecCceeEEEc
Q 010470 372 DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR--SLEVCGSLRATGNRVASNWSRSCIS 449 (510)
Q Consensus 372 dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~s 449 (510)
|+.|++||+|..+...++......++.++.|++.|.+|+.++.+=.|++++-. ++..+..+..+.+.. +.+.|.
T Consensus 410 d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~s----t~v~Fg 485 (506)
T KOG0289|consen 410 DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLS----TGVRFG 485 (506)
T ss_pred CCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhccccc----ceeeec
Confidence 99999999999998888888776789999999999999999887777777643 345555554444333 348899
Q ss_pred CCCCEEEEEcCCCeEEEEeC
Q 010470 450 PDESYVAAGSADGSVYIWSI 469 (510)
Q Consensus 450 ~~~~~l~~~~~dg~i~iwd~ 469 (510)
...+++++++.|..++++.+
T Consensus 486 ~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 486 EHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccceEEeeccchhheEEeec
Confidence 99999999999998888764
No 74
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-31 Score=225.85 Aligned_cols=289 Identities=20% Similarity=0.377 Sum_probs=244.3
Q ss_pred CCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEE
Q 010470 213 VPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLY 292 (510)
Q Consensus 213 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 292 (510)
........+.||..+|..++.......+.+++.|.+.+||.+++|.++.++.||.+.|+++.|++.+.++++++.|++..
T Consensus 136 ~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 136 VKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAH 215 (481)
T ss_pred eeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchH
Confidence 34556778999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred EEEc------CCC----------------------------------CeeEeecCCCCceEEEEEecCCCCEEEEEeCCC
Q 010470 293 VWDV------NSG----------------------------------RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR 332 (510)
Q Consensus 293 iwd~------~~~----------------------------------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg 332 (510)
||.. ... .++..+.+|...|.+..|.. ++..+++++.|.
T Consensus 216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDR 294 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDR 294 (481)
T ss_pred HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeeeccc
Confidence 9962 110 14556789999999999987 899999999999
Q ss_pred cEEEEECCCCeEeeeeeecC-ceeEEEEcCCCCEEEEecCCCcEEEEECCCC-ceeeeecccccccEEEEEEcCCCCEEE
Q 010470 333 TLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTG-KLLSEVAAHSLAAVTSISLSRSGNIIL 410 (510)
Q Consensus 333 ~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~ 410 (510)
+..+||+++|.++..+.+|. ..+.++-+|..+++++.+.|.+.++||++.. ..+..|.+|. ..|+++.|..+ ..++
T Consensus 295 TAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt-dtVTS~vF~~d-d~vV 372 (481)
T KOG0300|consen 295 TANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT-DTVTSVVFNTD-DRVV 372 (481)
T ss_pred cceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccc-cceeEEEEecC-Ccee
Confidence 99999999999999998885 4888889999999999999999999999854 3455667776 89999999875 5688
Q ss_pred EEecCCcEEEEEcCCcee-eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecc-----cccCcC
Q 010470 411 TSGRDNLHNLFDIRSLEV-CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTL-----KEHTAP 484 (510)
Q Consensus 411 ~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~ 484 (510)
+|+.|.+|++||+++... +.+++. .++++.++++..+..|+.--++..|++||++... +..+ ++|..-
T Consensus 373 SgSDDrTvKvWdLrNMRsplATIRt-----dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R-laRlPrtsRqgHrRM 446 (481)
T KOG0300|consen 373 SGSDDRTVKVWDLRNMRSPLATIRT-----DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR-LARLPRTSRQGHRRM 446 (481)
T ss_pred ecCCCceEEEeeeccccCcceeeec-----CCccceeEeecCCceEEeccCCceEEEEecCCCc-cccCCccccccccee
Confidence 999999999999997653 333332 2344558899989999999999999999987544 3333 468999
Q ss_pred EEEEEEeCCCC--cEEEeeCCCeEEEcC
Q 010470 485 VLSCSWSGLGK--PLASADKNGVVCVWT 510 (510)
Q Consensus 485 v~~~~~~~~~~--~l~s~~~dg~i~iwd 510 (510)
|+|++|..+-. -|++||.|..+.-|.
T Consensus 447 V~c~AW~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 447 VTCCAWLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred eeeeeccccCcccccccccccceeeeeE
Confidence 99999986543 588999999988874
No 75
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.1e-32 Score=256.54 Aligned_cols=246 Identities=21% Similarity=0.393 Sum_probs=208.5
Q ss_pred eccc-ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC--------------------------------C--------
Q 010470 261 STLY-GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS--------------------------------G-------- 299 (510)
Q Consensus 261 ~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--------------------------------~-------- 299 (510)
..+. .|.+.|+++.|++||+||++|+.||.|+||.+.. .
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 4455 8999999999999999999999999999998754 0
Q ss_pred --------------------CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEE
Q 010470 300 --------------------RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAF 359 (510)
Q Consensus 300 --------------------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~ 359 (510)
++++.+.||.+.|.++.|+. +++|++++.|.+|++|++....|+..|.+..-|+|++|
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaF 417 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAF 417 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEe
Confidence 23345779999999999986 78999999999999999999999999999999999999
Q ss_pred cC-CCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCC-
Q 010470 360 SM-DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGN- 437 (510)
Q Consensus 360 ~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~- 437 (510)
+| |.++|++|+-||.|+||++...+.+.-...+ .-|++++|.|+|++.++|+.+|.+++|+....+....+.....
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~--~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~ 495 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR--DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN 495 (712)
T ss_pred cccCCCcEeecccccceEEeecCcCeeEeehhhh--hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc
Confidence 99 8899999999999999999877766655555 7899999999999999999999999999998777655542211
Q ss_pred ---eeecCceeEEEcCC-CCEEEEEcCCCeEEEEeCCCcceeecccccC--cCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 438 ---RVASNWSRSCISPD-ESYVAAGSADGSVYIWSISKADIVRTLKEHT--APVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 438 ---~~~~~~~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
.....++.+.|.|. ...|++.+.|..|+|||..+..++..++++. +.-....|+.||++|++++.|..|++|+
T Consensus 496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~ 574 (712)
T KOG0283|consen 496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWK 574 (712)
T ss_pred CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEe
Confidence 11124566777763 3357777889999999999999999998743 2345678999999999999999999995
No 76
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-31 Score=246.33 Aligned_cols=271 Identities=19% Similarity=0.287 Sum_probs=233.7
Q ss_pred EEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecC-
Q 010470 229 ASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTG- 307 (510)
Q Consensus 229 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~- 307 (510)
+-+.|+ ..+.|++|. ...|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+
T Consensus 181 nlldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~ 258 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS 258 (484)
T ss_pred hHhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC
Confidence 345677 344677665 45899999999987665555589999999999999999999999999999999999999988
Q ss_pred CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeee-eeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCce
Q 010470 308 HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT-IIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL 385 (510)
Q Consensus 308 ~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 385 (510)
|...|.+++|. ...+.+|+.||.|..+|++....... +..| ..|..+.|++|+.++++|+.|+.+.|||.....+
T Consensus 259 h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p 335 (484)
T KOG0305|consen 259 HASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP 335 (484)
T ss_pred cCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc
Confidence 99999999996 58899999999999999998765554 4444 4599999999999999999999999999988888
Q ss_pred eeeecccccccEEEEEEcCC-CCEEEEEe--cCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEE--EcC
Q 010470 386 LSEVAAHSLAAVTSISLSRS-GNIILTSG--RDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAA--GSA 460 (510)
Q Consensus 386 ~~~~~~~~~~~i~~i~~~~~-~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--~~~ 460 (510)
...+..|. ..|..++|+|- ..+||+|+ .|++|++||..++..+..+.... .++.+.|++..+-|++ |..
T Consensus 336 ~~~~~~H~-aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs-----QVcsL~Wsk~~kEi~sthG~s 409 (484)
T KOG0305|consen 336 KFTFTEHT-AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS-----QVCSLIWSKKYKELLSTHGYS 409 (484)
T ss_pred cEEEeccc-eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCC-----ceeeEEEcCCCCEEEEecCCC
Confidence 88998887 99999999995 55777754 68999999999998877765443 3445899999877666 445
Q ss_pred CCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 461 DGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 461 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
++.|.||++.+.+.+..+.+|...|..++++|||..+++|+.|.++++|+
T Consensus 410 ~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 410 ENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred CCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 77899999999999999999999999999999999999999999999995
No 77
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.3e-31 Score=224.96 Aligned_cols=293 Identities=21% Similarity=0.383 Sum_probs=239.8
Q ss_pred CCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeE
Q 010470 212 TVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNL 291 (510)
Q Consensus 212 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 291 (510)
..|....+++.... -.|+.|++.|.+||+|+.||.|.|||+.+...-..+.+|..+|++++|++||+.|++++.|..|
T Consensus 12 ~~PEel~~tld~~~--a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si 89 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL--AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSI 89 (405)
T ss_pred cChHhhceeccCCc--cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCcee
Confidence 45666666665444 8899999999999999999999999999999989999999999999999999999999999999
Q ss_pred EEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-------CceeEEEEcCCCC
Q 010470 292 YVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-------SNCNALAFSMDGQ 364 (510)
Q Consensus 292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~i~~i~~~~~~~ 364 (510)
.+||+..|.+++.+. ...+|+...|+|.+.+.+++.-.+..-.+.++..+ ++.+... ....+..|.+.|+
T Consensus 90 ~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr~g~ 166 (405)
T KOG1273|consen 90 KLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDRRGK 166 (405)
T ss_pred EEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccCCCC
Confidence 999999999988887 67899999999987777777666666666666542 2222211 1134556889999
Q ss_pred EEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCce-------eeeEeecCCC
Q 010470 365 TIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLE-------VCGSLRATGN 437 (510)
Q Consensus 365 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~-------~~~~~~~~~~ 437 (510)
++++|...|.+.+||..+.+++..+.......|..|.++..|+.|+..+.|..|+.|+++.-- +....+....
T Consensus 167 yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv 246 (405)
T KOG1273|consen 167 YIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV 246 (405)
T ss_pred EEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH
Confidence 999999999999999999999988887666789999999999999999999999999987321 1100111111
Q ss_pred eeecCceeEEEcCCCCEEEEEcC-CCeEEEEeCCCcceeecccccC-cCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 438 RVASNWSRSCISPDESYVAAGSA-DGSVYIWSISKADIVRTLKEHT-APVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 438 ~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
.....|.+++||.+|.|+++|+. -..++||....|.+++.+.|.. .....+.|+|-...+++. ..|.+++|.
T Consensus 247 VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 247 VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred HhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence 22346788999999999998875 3579999999999999998866 567889999998888887 778999994
No 78
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-31 Score=224.13 Aligned_cols=267 Identities=18% Similarity=0.344 Sum_probs=229.4
Q ss_pred CccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCC--EEEEEeCCCeE
Q 010470 214 PSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR--SVIAASSSNNL 291 (510)
Q Consensus 214 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i 291 (510)
...+.+.+.+|.++|++++.+ |.++|+||.|-+|+|||+.....+..+-.|.+.|+++.|.++-. .|++|+.||.|
T Consensus 32 ~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 32 TLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred eeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcE
Confidence 345678899999999999987 88999999999999999999999999999999999999998876 89999999999
Q ss_pred EEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecC
Q 010470 292 YVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI 371 (510)
Q Consensus 292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 371 (510)
.+|+.....++..+++|.+.|+.++++| .+.+.++.+.|+.++.||+-+|+.-.........+.+.|+|.|.+++.+..
T Consensus 110 ~iw~~~~W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~ 188 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGR 188 (362)
T ss_pred EEEEcCCeEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEec
Confidence 9999999999999999999999999999 889999999999999999999998888877777788999999999998887
Q ss_pred CCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCC
Q 010470 372 DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD 451 (510)
Q Consensus 372 dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 451 (510)
+ .|-+|.+.+.+....+... ..+.++.|. ++..+++|+.|+.|.+||..+..+...+.+|.+.+..-. ..-.|+
T Consensus 189 ~-~i~i~q~d~A~v~~~i~~~--~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~--~~~~~~ 262 (362)
T KOG0294|consen 189 N-KIDIYQLDNASVFREIENP--KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIA--SYTNPE 262 (362)
T ss_pred c-EEEEEecccHhHhhhhhcc--ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeE--EEecCC
Confidence 6 6999999887776666654 456777765 567899999999999999999999999999998887511 224678
Q ss_pred CCEEEEEcCCCeEEEEeCCCc-----ceeecccccCcCEEEEEE
Q 010470 452 ESYVAAGSADGSVYIWSISKA-----DIVRTLKEHTAPVLSCSW 490 (510)
Q Consensus 452 ~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~ 490 (510)
+.||++.|+||.|+|||+... +++..+.. ...++|+..
T Consensus 263 ~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 263 HEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV 305 (362)
T ss_pred ceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence 999999999999999998865 34444432 445556543
No 79
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=2.6e-31 Score=258.22 Aligned_cols=283 Identities=18% Similarity=0.283 Sum_probs=238.6
Q ss_pred cccc-cceEEEEEecCCCEEEEee--CCCeEEEEeCCC------------CcceecccccccceeEEEEecCCCEEEEEe
Q 010470 222 NAHE-GGCASILFEYNSARLISGG--QDKSIKLWDTNT------------GSLSSTLYGCLGSVLDLAITHDNRSVIAAS 286 (510)
Q Consensus 222 ~~h~-~~v~~~~~s~~~~~l~s~~--~dg~i~iwd~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 286 (510)
-+|. ..|.++..+|||..++||| .||.++||+.+. .+.+.+...|.+.|+|+.|+|||.+|++|+
T Consensus 9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS 88 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS 88 (942)
T ss_pred cccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence 3454 4699999999999999999 899999998742 233556678999999999999999999999
Q ss_pred CCCeEEEEEcCC------------------CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee
Q 010470 287 SSNNLYVWDVNS------------------GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI 348 (510)
Q Consensus 287 ~d~~i~iwd~~~------------------~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 348 (510)
.|+.|.||.... .+.+..+.+|.+.|..+.|+| ++.++++++.|++|.+||..+...+..+
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl 167 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVL 167 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceeeeee
Confidence 999999998762 135677889999999999999 8999999999999999999999999999
Q ss_pred eecC-ceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccc-----cccEEEEEEcCCCCEEEEEec----CCcE
Q 010470 349 IFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS-----LAAVTSISLSRSGNIILTSGR----DNLH 418 (510)
Q Consensus 349 ~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~i~~i~~~~~~~~l~~~~~----d~~i 418 (510)
..|. .|..+.|.|-|++|++-+.|++|++|++.+....+.+..+. ...+..+.|||||.+|++... -.++
T Consensus 168 ~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~ 247 (942)
T KOG0973|consen 168 RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTI 247 (942)
T ss_pred ecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCccee
Confidence 8875 59999999999999999999999999977765665554432 245788999999999998642 3478
Q ss_pred EEEEcCCceeeeEeecCCCeeecCceeEEEcCC------C-------C----EEEEEcCCCeEEEEeCCCcceeecccc-
Q 010470 419 NLFDIRSLEVCGSLRATGNRVASNWSRSCISPD------E-------S----YVAAGSADGSVYIWSISKADIVRTLKE- 480 (510)
Q Consensus 419 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~------~-------~----~l~~~~~dg~i~iwd~~~~~~~~~~~~- 480 (510)
.|.+-.+.+.-..+-+|..++.. +.|+|. + + .+|+|+.|++|.||.....+++..+..
T Consensus 248 ~IieR~tWk~~~~LvGH~~p~ev----vrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l 323 (942)
T KOG0973|consen 248 AIIERGTWKVDKDLVGHSAPVEV----VRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL 323 (942)
T ss_pred EEEecCCceeeeeeecCCCceEE----EEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhh
Confidence 89988888888888888887665 777652 1 1 578899999999999988887766543
Q ss_pred cCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 481 HTAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 481 ~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
...+|.+++|+|||-.|+.|+.||+|.+.
T Consensus 324 f~~SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 324 FNKSIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred hcCceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 56789999999999999999999999874
No 80
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.1e-31 Score=219.72 Aligned_cols=242 Identities=25% Similarity=0.384 Sum_probs=220.4
Q ss_pred ecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeE--eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEE
Q 010470 261 STLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH--TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD 338 (510)
Q Consensus 261 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd 338 (510)
+.+.+|...|.+++|+.+|..+++|+.|+++.+|++...+... ...+|.+.|-.++|+|..+..+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 4567899999999999999999999999999999998776444 34689999999999998999999999999999999
Q ss_pred CCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcE
Q 010470 339 LHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLH 418 (510)
Q Consensus 339 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i 418 (510)
++.++++..+.....-.-++|+|+|.++++++.|..|.+.|.++.+........ ..+.-++|+.++++++.....|+|
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~--~e~ne~~w~~~nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK--FEVNEISWNNSNDLFFLTNGLGCV 171 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhccc--ceeeeeeecCCCCEEEEecCCceE
Confidence 999999999988877677999999999999999999999999998887776655 678889999889999999899999
Q ss_pred EEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEE
Q 010470 419 NLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLA 498 (510)
Q Consensus 419 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 498 (510)
.|......+++..+..|.....+ +.|+|+|+|||+|+.|-.+.+||+..--+++.+..+.-||..++||.||++|+
T Consensus 172 ~ILsypsLkpv~si~AH~snCic----I~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 172 EILSYPSLKPVQSIKAHPSNCIC----IEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred EEEeccccccccccccCCcceEE----EEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceee
Confidence 99999999999999998866554 89999999999999999999999999989999999999999999999999999
Q ss_pred EeeCCCeEEE
Q 010470 499 SADKNGVVCV 508 (510)
Q Consensus 499 s~~~dg~i~i 508 (510)
+++.|..|-|
T Consensus 248 SaSEDh~IDI 257 (313)
T KOG1407|consen 248 SASEDHFIDI 257 (313)
T ss_pred ccCccceEEe
Confidence 9999988754
No 81
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.6e-31 Score=221.16 Aligned_cols=288 Identities=20% Similarity=0.298 Sum_probs=218.3
Q ss_pred ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcce--ec--ccccccceeEEEEecCCCEEEEEe-CCCeE
Q 010470 217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLS--ST--LYGCLGSVLDLAITHDNRSVIAAS-SSNNL 291 (510)
Q Consensus 217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--~~--~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i 291 (510)
....++||.+.|++++|+.||++|+|++.|++|+||++...... +. ..-..+..+.+.|.||-+-+++.. ...++
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence 45678999999999999999999999999999999999763221 11 111223568899999988776665 55689
Q ss_pred EEEEcCC---CCeeEe---------ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEE
Q 010470 292 YVWDVNS---GRVRHT---------LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALA 358 (510)
Q Consensus 292 ~iwd~~~---~~~~~~---------~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~ 358 (510)
++|.+.. |..... -..|.-.+..+-... ++.+|++++.|..|.+|+++ |+.+..+... ..-...+
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA 235 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceeeeecccccccccee
Confidence 9998743 221111 123555666666655 78899999999999999998 8888887655 3466788
Q ss_pred EcCCCCEEEEecCCCcEEEEECC---CC-----ceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC-----
Q 010470 359 FSMDGQTIFSGHIDGNLRLWDIQ---TG-----KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS----- 425 (510)
Q Consensus 359 ~~~~~~~l~~~~~dg~i~i~d~~---~~-----~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~----- 425 (510)
++|+|+++++++..-.|.+|.+- .| ..+..+.+|. +.|..++|+|+...+++.+.||.++|||+.-
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~-saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~ 314 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ-SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAG 314 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch-hheeeeeeCCCcceeEEEecCCcEEEeeccceEecC
Confidence 99999999999998999999863 22 3456677777 8999999999999999999999999999852
Q ss_pred --ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccc-cCcCEEEEEEeCCCCcEEEeeC
Q 010470 426 --LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE-HTAPVLSCSWSGLGKPLASADK 502 (510)
Q Consensus 426 --~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~ 502 (510)
.+.+.....+..........+.++|+|+.|+.+.. ..+.+|...+|+....+.. |...|.+++|+++|+++++||
T Consensus 315 qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG- 392 (420)
T KOG2096|consen 315 QDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG- 392 (420)
T ss_pred CCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-
Confidence 12222222111122223346899999999988764 4699999999988777754 999999999999999999997
Q ss_pred CCeEEEc
Q 010470 503 NGVVCVW 509 (510)
Q Consensus 503 dg~i~iw 509 (510)
|..++++
T Consensus 393 dr~vrv~ 399 (420)
T KOG2096|consen 393 DRYVRVI 399 (420)
T ss_pred ceeeeee
Confidence 4466553
No 82
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.2e-33 Score=233.13 Aligned_cols=277 Identities=20% Similarity=0.311 Sum_probs=241.7
Q ss_pred chHHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc
Q 010470 185 GLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY 264 (510)
Q Consensus 185 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 264 (510)
.-+.+++++.||.+.+|+-..... ...+..+....|--|..+|.|+.||.|...+++|+.||.|+||.+.+|.+++.+.
T Consensus 224 DgqyLvsgSvDGFiEVWny~~GKl-rKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd 302 (508)
T KOG0275|consen 224 DGQYLVSGSVDGFIEVWNYTTGKL-RKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD 302 (508)
T ss_pred CCceEeeccccceeeeehhccchh-hhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh
Confidence 456688999999999998443211 1222333444566788999999999999999999999999999999999999987
Q ss_pred -ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 010470 265 -GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY 343 (510)
Q Consensus 265 -~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 343 (510)
.|...|+|+.|+.|+..+++++.|.++++.-+.+|+++..+.+|...|+...|.+ +++.+++++.||+|++|+..+..
T Consensus 303 rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~Ktte 381 (508)
T KOG0275|consen 303 RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTE 381 (508)
T ss_pred hhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcchh
Confidence 8999999999999999999999999999999999999999999999999999998 89999999999999999999999
Q ss_pred EeeeeeecC---ceeEEEEcC-CCCEEEEecCCCcEEEEECCCCceeeeecccc--cccEEEEEEcCCCCEEEEEecCCc
Q 010470 344 CVNTIIFHS---NCNALAFSM-DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS--LAAVTSISLSRSGNIILTSGRDNL 417 (510)
Q Consensus 344 ~~~~~~~~~---~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~d~~ 417 (510)
|+.++...+ +++++-..| +...++++....+|++.++ .|+.++.+.... .+...+.+++|.|.++++.+.|+.
T Consensus 382 C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~v 460 (508)
T KOG0275|consen 382 CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGV 460 (508)
T ss_pred hhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcE
Confidence 999997654 478888777 5668889999999999997 688888886543 356777889999999999999999
Q ss_pred EEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEe
Q 010470 418 HNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWS 468 (510)
Q Consensus 418 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd 468 (510)
++.|...++..-.++..+...+.. ++-+|..+.|++-+.||.+++|.
T Consensus 461 lYCF~~~sG~LE~tl~VhEkdvIG----l~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 461 LYCFSVLSGKLERTLPVHEKDVIG----LTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEEEeecCceeeeeecccccccc----cccCcccchhhhhcccchhhhcC
Confidence 999999999999888887766655 78899999999999999999995
No 83
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=2.7e-30 Score=248.99 Aligned_cols=248 Identities=18% Similarity=0.273 Sum_probs=198.2
Q ss_pred eeCCCeEEEEeCCCCcceecccccccceeEEEEecC-CCEEEEEeCCCeEEEEEcCCCC--------eeEeecCCCCceE
Q 010470 243 GGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHD-NRSVIAASSSNNLYVWDVNSGR--------VRHTLTGHTDKVC 313 (510)
Q Consensus 243 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~v~ 313 (510)
|+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.||.|+|||+.++. ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 667899999998887788889999999999999997 7899999999999999997642 3456788999999
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccc
Q 010470 314 AVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS 393 (510)
Q Consensus 314 ~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 393 (510)
+++|+|....++++++.|++|++||++++..+..+..+..+.+++|+|+|.+|++++.|+.|++||+++++.+..+..|.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 99999954456789999999999999999887777766779999999999999999999999999999999998888776
Q ss_pred cccEE-----EEEEcCCCCEEEEEecCC----cEEEEEcCC-ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCe
Q 010470 394 LAAVT-----SISLSRSGNIILTSGRDN----LHNLFDIRS-LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGS 463 (510)
Q Consensus 394 ~~~i~-----~i~~~~~~~~l~~~~~d~----~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~ 463 (510)
+.+. ...|++++.+|++++.++ .|+|||+++ ..++..+....... .+......++|.++++|+.|+.
T Consensus 210 -g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~--~L~p~~D~~tg~l~lsGkGD~t 286 (568)
T PTZ00420 210 -GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASA--PLIPHYDESTGLIYLIGKGDGN 286 (568)
T ss_pred -CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCcc--ceEEeeeCCCCCEEEEEECCCe
Confidence 4332 234568999999988774 799999995 45554443322111 1111233556899999999999
Q ss_pred EEEEeCCCcce--eecccccCcCEEEEEEeCCC
Q 010470 464 VYIWSISKADI--VRTLKEHTAPVLSCSWSGLG 494 (510)
Q Consensus 464 i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~ 494 (510)
|++|++..+.. +..+. +..++.+++|.|..
T Consensus 287 Ir~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 287 CRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEEEccCCcEEeecccc-cCCCccceEEcccc
Confidence 99999987643 22222 56788999999974
No 84
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.9e-32 Score=235.39 Aligned_cols=271 Identities=20% Similarity=0.304 Sum_probs=225.5
Q ss_pred hhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc-ccc
Q 010470 189 LAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY-GCL 267 (510)
Q Consensus 189 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~ 267 (510)
+++++.|.+.-+|.... ..-.+..+++.||..+|..+.||||.++|++|+.|..+.+||+.+|.....+. ++.
T Consensus 239 LAsaSkD~Taiiw~v~~------d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~ 312 (519)
T KOG0293|consen 239 LASASKDSTAIIWIVVY------DVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLG 312 (519)
T ss_pred EeeccCCceEEEEEEec------CcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcC
Confidence 44555555555554221 12256789999999999999999999999999999999999999999877664 456
Q ss_pred cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCC-CCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEee
Q 010470 268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGH-TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN 346 (510)
Q Consensus 268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 346 (510)
..+.+++|.|||..+++|+.|+.+..||++ |.......+. ...|.++++.+ ++.++++.+.|..|++++..+.....
T Consensus 313 ~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~ 390 (519)
T KOG0293|consen 313 FSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREARVDRG 390 (519)
T ss_pred CCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcC-CCcEEEEEecccceeeechhhhhhhc
Confidence 899999999999999999999999999987 4444445443 35699999999 88899998999999999998887777
Q ss_pred eeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccccccc-EEEEEEcC-CCCEEEEEecCCcEEEEEcC
Q 010470 347 TIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA-VTSISLSR-SGNIILTSGRDNLHNLFDIR 424 (510)
Q Consensus 347 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-i~~i~~~~-~~~~l~~~~~d~~i~i~d~~ 424 (510)
.+..+.++++++++.+|+++++.-.+..+++||+...+.+..+.++..+. +-.-+|.- +..++++|+.|+.|+||+..
T Consensus 391 lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~ 470 (519)
T KOG0293|consen 391 LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI 470 (519)
T ss_pred cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEcc
Confidence 88888999999999999999999999999999999888888888876332 22334443 55799999999999999999
Q ss_pred CceeeeEeecCCCeeecCceeEEEcCC-CCEEEEEcCCCeEEEEeCCC
Q 010470 425 SLEVCGSLRATGNRVASNWSRSCISPD-ESYVAAGSADGSVYIWSISK 471 (510)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~i~iwd~~~ 471 (510)
+++++..+.+|...+.+ ++|+|. ...+|++++||+|+||....
T Consensus 471 sgkll~~LsGHs~~vNc----VswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 471 SGKLLAVLSGHSKTVNC----VSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCceeEeecCCcceeeE----EecCCCCHHHhhccCCCCeEEEecCCc
Confidence 99999999999877765 999994 56799999999999998653
No 85
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.6e-30 Score=218.24 Aligned_cols=273 Identities=19% Similarity=0.281 Sum_probs=227.4
Q ss_pred cccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeE
Q 010470 224 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH 303 (510)
Q Consensus 224 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 303 (510)
....|+.|.|+|.+..|++++.||++++||+....... ...|..++.+++|.+ ...+++|+.||.|+.+|++++...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~-~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~- 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL-KFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED- 88 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh-heecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-
Confidence 35689999999999999999999999999998775443 346899999999986 566999999999999999987654
Q ss_pred eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCC
Q 010470 304 TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTG 383 (510)
Q Consensus 304 ~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~ 383 (510)
.+..|..+|.|+.+++ ..+.+++||.|++|++||.+.......+.....|.++.. .|+.|++|+.+..|.+||+++.
T Consensus 89 ~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred eeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEeecCceEEEEEcccc
Confidence 4456999999999998 788999999999999999998777777776777887776 5889999999999999999987
Q ss_pred ceeeeecc-cccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCc----eeeeEeecCC-----CeeecCceeEEEcCCCC
Q 010470 384 KLLSEVAA-HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL----EVCGSLRATG-----NRVASNWSRSCISPDES 453 (510)
Q Consensus 384 ~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~-----~~~~~~~~~~~~s~~~~ 453 (510)
........ .-...++|+++.|++.-+++++-||.|.+=.+... .....|+.|. ..+..+++.++|+|--.
T Consensus 166 ~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~ 245 (323)
T KOG1036|consen 166 DEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG 245 (323)
T ss_pred cchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc
Confidence 65543322 22367999999999999999999999988666543 3333444443 33445678899999999
Q ss_pred EEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeC
Q 010470 454 YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADK 502 (510)
Q Consensus 454 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 502 (510)
.|++|+.||.|.+||+.+.+.+..+......|.+++|+.+|..||+++.
T Consensus 246 tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 246 TFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 9999999999999999999999999888888999999999999998864
No 86
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.6e-31 Score=234.51 Aligned_cols=247 Identities=22% Similarity=0.370 Sum_probs=215.6
Q ss_pred ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCC-EEEEEeCCCeEEEEE
Q 010470 217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR-SVIAASSSNNLYVWD 295 (510)
Q Consensus 217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd 295 (510)
...++.-....|.++.|-.||++|++|...|.|+|||..+...+..+.+|..+|..+.|+|.++ .+++|+.|+.+++||
T Consensus 60 ~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d 139 (487)
T KOG0310|consen 60 VRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWD 139 (487)
T ss_pred hhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEE
Confidence 3445566778899999999999999999999999999887778899999999999999999765 456677788999999
Q ss_pred cCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC-eEeeeeeecCceeEEEEcCCCCEEEEecCCCc
Q 010470 296 VNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG-YCVNTIIFHSNCNALAFSMDGQTIFSGHIDGN 374 (510)
Q Consensus 296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~ 374 (510)
+.+......+.+|++.|.|.+|+|.++.+++|||+||.|++||++.. ..+..+.+..+|..+.+-|.|..|++++. ..
T Consensus 140 ~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~ 218 (487)
T KOG0310|consen 140 LSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NS 218 (487)
T ss_pred cCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-Ce
Confidence 99988877899999999999999988889999999999999999987 77888888899999999999999998875 48
Q ss_pred EEEEECCCCcee-eeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCC
Q 010470 375 LRLWDIQTGKLL-SEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES 453 (510)
Q Consensus 375 i~i~d~~~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 453 (510)
|++||+-+|... .....|+ ..|+|+++..++..|++++-|+.+++||+.+.+.+..+..++... +++++|+++
T Consensus 219 vkVWDl~~G~qll~~~~~H~-KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvL-----siavs~dd~ 292 (487)
T KOG0310|consen 219 VKVWDLTTGGQLLTSMFNHN-KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVL-----SIAVSPDDQ 292 (487)
T ss_pred EEEEEecCCceehhhhhccc-ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccccee-----eEEecCCCc
Confidence 999999866544 4444455 899999999999999999999999999999999988887665544 389999999
Q ss_pred EEEEEcCCCeEEEEeCC
Q 010470 454 YVAAGSADGSVYIWSIS 470 (510)
Q Consensus 454 ~l~~~~~dg~i~iwd~~ 470 (510)
.++.|..||.+.+-+..
T Consensus 293 t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 293 TVVIGMSNGLVSIRRRE 309 (487)
T ss_pred eEEEecccceeeeehhh
Confidence 99999999988877543
No 87
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.7e-32 Score=231.31 Aligned_cols=271 Identities=20% Similarity=0.343 Sum_probs=229.7
Q ss_pred chHHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc
Q 010470 185 GLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY 264 (510)
Q Consensus 185 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 264 (510)
.+..+++|+.||.+++|+... ..|..+|.+|.|.|..++++. ..++++|.|.+|+.|.++. .+..++.
T Consensus 78 ~ls~~aSGs~DG~VkiWnlsq---------R~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~til 145 (433)
T KOG0268|consen 78 KLSTVASGSCDGEVKIWNLSQ---------RECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTIL 145 (433)
T ss_pred hhhhhhccccCceEEEEehhh---------hhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeee
Confidence 557789999999999999654 458899999999999999987 6889999999999999874 4555554
Q ss_pred ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 010470 265 GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC 344 (510)
Q Consensus 265 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 344 (510)
+ .+.+..+.-+..+..+++++. .|.|||.....++..+....+.|.++.|+|....+|++|+.|+.|.+||++.+.+
T Consensus 146 g-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P 222 (433)
T KOG0268|consen 146 G-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASP 222 (433)
T ss_pred c-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCc
Confidence 3 556677777777777888876 5999999989999999999999999999998889999999999999999999999
Q ss_pred eeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCc-eeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEc
Q 010470 345 VNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK-LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDI 423 (510)
Q Consensus 345 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~ 423 (510)
+..+......+.|+|+|.+-.|++|+.|.+++.||++... ++.....|. +.|.+++|||.|+-|++|+.|.+|+||..
T Consensus 223 l~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhv-sAV~dVdfsptG~EfvsgsyDksIRIf~~ 301 (433)
T KOG0268|consen 223 LKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHV-SAVMDVDFSPTGQEFVSGSYDKSIRIFPV 301 (433)
T ss_pred cceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccc-eeEEEeccCCCcchhccccccceEEEeec
Confidence 9999999999999999988889999999999999999865 444555555 89999999999999999999999999999
Q ss_pred CCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcce
Q 010470 424 RSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADI 474 (510)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 474 (510)
+.+.....+. .... ..+.++.||.|.+||++||+|+.|++|.....+.
T Consensus 302 ~~~~SRdiYh--tkRM-q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 302 NHGHSRDIYH--TKRM-QHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred CCCcchhhhh--Hhhh-heeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 8665433322 1111 2345689999999999999999999998765443
No 88
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=6.3e-29 Score=199.40 Aligned_cols=288 Identities=16% Similarity=0.259 Sum_probs=232.7
Q ss_pred ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC------C-----cc----eecccccccceeEEEEecCCCE
Q 010470 217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT------G-----SL----SSTLYGCLGSVLDLAITHDNRS 281 (510)
Q Consensus 217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~------~-----~~----~~~~~~~~~~v~~~~~~~~~~~ 281 (510)
++..+. ....|.+++|+|.|.+.++|+...+.+|.-... + .+ .+.-+.|.+.|.|.+|+|+|.+
T Consensus 25 ~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~gel 103 (350)
T KOG0641|consen 25 AINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGEL 103 (350)
T ss_pred EEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCe
Confidence 333333 345799999999999999999999998875432 1 01 1223468899999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCC-----eeEeecCCCCceEEEEEecC---CCCEEEEEeC-CCcEEEEECCCCeEeeeeeecC
Q 010470 282 VIAASSSNNLYVWDVNSGR-----VRHTLTGHTDKVCAVDVSKI---SSRHVVSAAY-DRTLKVWDLHKGYCVNTIIFHS 352 (510)
Q Consensus 282 l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~v~~i~~~~~---~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~ 352 (510)
+++|++|.+|++.-++... .-..+..|.+.|..++|... .+.++++++. |..|++-|...|+..+.+.++.
T Consensus 104 iatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sght 183 (350)
T KOG0641|consen 104 IATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHT 183 (350)
T ss_pred EEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCc
Confidence 9999999999998765432 23456779999999999752 3456776653 6778888999999999888886
Q ss_pred c-eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccc------ccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC
Q 010470 353 N-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH------SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS 425 (510)
Q Consensus 353 ~-i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~ 425 (510)
. |.++ ++-+|-++++|+.|.+|++||++-...+..+... ..+.|.++++.|.|++|++|..|....+||++.
T Consensus 184 ghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg 262 (350)
T KOG0641|consen 184 GHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG 262 (350)
T ss_pred ccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC
Confidence 5 4433 3447899999999999999999988888776432 125799999999999999999999999999999
Q ss_pred ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc----ceeecccccCcCEEEEEEeCCCCcEEEee
Q 010470 426 LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA----DIVRTLKEHTAPVLSCSWSGLGKPLASAD 501 (510)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 501 (510)
++.++.+..|...+.+ +.|+|...|+.+|+.|..|++-|+... -++.....|...+..+.|+|..-.+++.+
T Consensus 263 ~r~iq~f~phsadir~----vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisss 338 (350)
T KOG0641|consen 263 GRMIQRFHPHSADIRC----VRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSS 338 (350)
T ss_pred CceeeeeCCCccceeE----EEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeecc
Confidence 9999999888776655 999999999999999999999998642 12334456999999999999999999999
Q ss_pred CCCeEEEcC
Q 010470 502 KNGVVCVWT 510 (510)
Q Consensus 502 ~dg~i~iwd 510 (510)
.|.++.+|.
T Consensus 339 adkt~tlwa 347 (350)
T KOG0641|consen 339 ADKTATLWA 347 (350)
T ss_pred CcceEEEec
Confidence 999999993
No 89
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=3.4e-29 Score=240.58 Aligned_cols=228 Identities=15% Similarity=0.251 Sum_probs=187.2
Q ss_pred eccccccceEEEEEec-CCCEEEEeeCCCeEEEEeCCCC-------cceecccccccceeEEEEecCC-CEEEEEeCCCe
Q 010470 220 KINAHEGGCASILFEY-NSARLISGGQDKSIKLWDTNTG-------SLSSTLYGCLGSVLDLAITHDN-RSVIAASSSNN 290 (510)
Q Consensus 220 ~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~ 290 (510)
.+.||.+.|++++|+| ++.+|++|+.||+|++||+.++ ..+..+.+|...|.+++|+|++ ++|++++.|+.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4789999999999999 8899999999999999999765 2456788999999999999986 68999999999
Q ss_pred EEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc--eeEEEEcCCCCEEEE
Q 010470 291 LYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFS 368 (510)
Q Consensus 291 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~ 368 (510)
|+|||+.+++....+.+|...|.+++|+| ++.+|++++.||.|++||++++..+..+..+.. ...+.|.+++..+++
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt 228 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIIT 228 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEE
Confidence 99999999999999999999999999999 889999999999999999999998888876643 456788888887776
Q ss_pred ec----CCCcEEEEECCCCc-eeeeecccccccEEEEEEcCCCCEEEEEe-cCCcEEEEEcCCceeeeEeecCCCeeecC
Q 010470 369 GH----IDGNLRLWDIQTGK-LLSEVAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDIRSLEVCGSLRATGNRVASN 442 (510)
Q Consensus 369 ~~----~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 442 (510)
++ .|+.|++||+++.. ++.....+....+....|++++++|++++ .|+.|++||+.++............ .
T Consensus 229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~---~ 305 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVE---P 305 (493)
T ss_pred EecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCC---C
Confidence 43 47899999998764 33333333335666778999999999887 5999999999998876654432211 1
Q ss_pred ceeEEEcCC
Q 010470 443 WSRSCISPD 451 (510)
Q Consensus 443 ~~~~~~s~~ 451 (510)
...++|.|.
T Consensus 306 ~~g~~~~pk 314 (493)
T PTZ00421 306 HKGLCMMPK 314 (493)
T ss_pred CcceEeccc
Confidence 223666663
No 90
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=7e-30 Score=245.41 Aligned_cols=266 Identities=27% Similarity=0.487 Sum_probs=226.5
Q ss_pred hhhhcCCceEEecccccccccccCCCccceee-ccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccc
Q 010470 189 LAKQQVDGVVRRSEEGAEFFAESTVPSTCKHK-INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCL 267 (510)
Q Consensus 189 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 267 (510)
+.+++.+..+..|+... ...+.. +.||.+.|.+++|...+.++++|+.|.+++|||..+|.+...+.+|.
T Consensus 221 ~~~~s~~~tl~~~~~~~---------~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~ 291 (537)
T KOG0274|consen 221 FKSGSDDSTLHLWDLNN---------GYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHT 291 (537)
T ss_pred EEecCCCceeEEeeccc---------ceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCC
Confidence 34555666666666433 334555 99999999999999888899999999999999999999999999999
Q ss_pred cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeee
Q 010470 268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT 347 (510)
Q Consensus 268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 347 (510)
+.|.++... +.++++|+.|.+|++|++.++..+..+.+|.++|.++..+ +.++++|+.||+|++||+.+++++..
T Consensus 292 stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~s 366 (537)
T KOG0274|consen 292 SSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKS 366 (537)
T ss_pred ceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeee
Confidence 999988874 5568888999999999999999999999999999999985 78999999999999999999999999
Q ss_pred eeecC-ceeEEEEcCCCCEEEEecCCCcEEEEECCCC-ceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC
Q 010470 348 IIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTG-KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS 425 (510)
Q Consensus 348 ~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~ 425 (510)
+.+|. .|.++.+.+. ..+++|+.|+.|++||++++ +++..+..|. .-+.++. ..+++|++++.|+.|++||...
T Consensus 367 l~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~-~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~ 442 (537)
T KOG0274|consen 367 LSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHT-SLVSSLL--LRDNFLVSSSADGTIKLWDAEE 442 (537)
T ss_pred ecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCc-ccccccc--cccceeEeccccccEEEeeccc
Confidence 99885 4899987644 89999999999999999999 8998888886 5554444 4678999999999999999999
Q ss_pred ceeeeEeecC-CCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecc
Q 010470 426 LEVCGSLRAT-GNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTL 478 (510)
Q Consensus 426 ~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 478 (510)
++....+... ...+. .+++. ...+++++.||++.+||+.+++....+
T Consensus 443 ~~~~~~~~~~~~~~v~----~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 443 GECLRTLEGRHVGGVS----ALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred CceeeeeccCCcccEE----EeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 9999999875 22222 23332 578889999999999999999988766
No 91
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.5e-29 Score=210.64 Aligned_cols=247 Identities=20% Similarity=0.319 Sum_probs=211.8
Q ss_pred ceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeC--CCcEEE
Q 010470 259 LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY--DRTLKV 336 (510)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~--dg~i~i 336 (510)
+.+.+....+.|.++.|+++|.++++++.|..+++||..+++..+++..+.-.+..++|.. ..+.++.++. |.+|+.
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceEE
Confidence 3345555678999999999999999999999999999999999999998888899999987 5566666665 889999
Q ss_pred EECCCCeEeeeeeecCc-eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC
Q 010470 337 WDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD 415 (510)
Q Consensus 337 wd~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 415 (510)
.++.+.+.++.+.+|.. |++++.+|-+..+++++.|++|++||++..++...+... .-..++|+|.|-++|++...
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~---~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS---GRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC---CCcceeECCCCcEEEEecCC
Confidence 99999999999999865 999999999999999999999999999988877666654 34458999999999999988
Q ss_pred CcEEEEEcCCc--eeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCE---EEEEE
Q 010470 416 NLHNLFDIRSL--EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPV---LSCSW 490 (510)
Q Consensus 416 ~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v---~~~~~ 490 (510)
+.|++||+++. .+..++.... .....|..+.|||||++|+.++..+.+++.|.-+|....++..+...- .+.+|
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~-~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f 240 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITD-NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATF 240 (311)
T ss_pred CeEEEEEecccCCCCceeEccCC-CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEE
Confidence 89999999964 3444444332 334568889999999999999999999999999999988887765432 67899
Q ss_pred eCCCCcEEEeeCCCeEEEcC
Q 010470 491 SGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 491 ~~~~~~l~s~~~dg~i~iwd 510 (510)
+||++++++|+.||+|.+|+
T Consensus 241 tPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 241 TPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred CCCCcEEEEecCCCcEEEEE
Confidence 99999999999999999995
No 92
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.9e-29 Score=211.13 Aligned_cols=261 Identities=17% Similarity=0.264 Sum_probs=215.6
Q ss_pred EEEEeeCCCeEEEEeCCCC------------cceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeec
Q 010470 239 RLISGGQDKSIKLWDTNTG------------SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLT 306 (510)
Q Consensus 239 ~l~s~~~dg~i~iwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 306 (510)
.|++|+....|.-+++... .++..+..|.++|++++. ++.++++|+.|-+|+|||+.+......+-
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhccee
Confidence 3566776666666655321 225567789999999998 48999999999999999999999999999
Q ss_pred CCCCceEEEEEecCC-CCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcCCCCEEEEecCCCcEEEEECCCCc
Q 010470 307 GHTDKVCAVDVSKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK 384 (510)
Q Consensus 307 ~~~~~v~~i~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~ 384 (510)
.|.+.|+++.|.+.- ...|++|+.||.|.+|+...-.++.++..|. .|+.++++|.|+.-++.+.|+.++.||+-.|+
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 999999999998832 2489999999999999999999999998874 59999999999999999999999999999998
Q ss_pred eeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeE
Q 010470 385 LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSV 464 (510)
Q Consensus 385 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i 464 (510)
.-......+ ..+.+.|+|.|.+++.++.+ .|-+|.+.+......+..+.... ++..-++.++++|++|+.|
T Consensus 161 ~a~v~~L~~--~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l------~~~~l~~~~L~vG~d~~~i 231 (362)
T KOG0294|consen 161 VAFVLNLKN--KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRIL------CATFLDGSELLVGGDNEWI 231 (362)
T ss_pred cceeeccCC--cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccccce------eeeecCCceEEEecCCceE
Confidence 777666553 44559999999999988776 57889888766555444332111 1223368899999999999
Q ss_pred EEEeCCCcceeecccccCcCEEEEEE--eCCCCcEEEeeCCCeEEEcC
Q 010470 465 YIWSISKADIVRTLKEHTAPVLSCSW--SGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 465 ~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~~~dg~i~iwd 510 (510)
.+||.++..+...+.+|...|.++.+ .|++.+|+|+|+||.|+|||
T Consensus 232 ~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 232 SLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred EEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 99999999999999999999999985 36678999999999999997
No 93
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.2e-29 Score=223.86 Aligned_cols=280 Identities=14% Similarity=0.260 Sum_probs=237.9
Q ss_pred ccceEEEEEecCCCEEEEeeCCCeEEEEeCCC--CcceecccccccceeEEEEecCCC-EEEEEeCCCeEEEEEcCCCCe
Q 010470 225 EGGCASILFEYNSARLISGGQDKSIKLWDTNT--GSLSSTLYGCLGSVLDLAITHDNR-SVIAASSSNNLYVWDVNSGRV 301 (510)
Q Consensus 225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~ 301 (510)
.++|++|.|+|....+++++.||+++||.++. ...+..+.-...+|.+.+|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 46899999999999999999999999998863 344666667788999999999999 888899999999999998774
Q ss_pred eE--eecCCC-CceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEE
Q 010470 302 RH--TLTGHT-DKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLW 378 (510)
Q Consensus 302 ~~--~~~~~~-~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~ 378 (510)
.. ...++. ..+....++| ++++|+..|..|.|.+....++..+.++...+.+..++|+.+++.|++++.+|.|++|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred ccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 33 333443 3467788888 7889999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCc------eeeeEeecCCCeeecCceeEEEcCCC
Q 010470 379 DIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL------EVCGSLRATGNRVASNWSRSCISPDE 452 (510)
Q Consensus 379 d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~~~~~~~~~~~s~~~ 452 (510)
|++...++..+.....-.-++++.+++|.||++|+..|.|.|||..+. +++..+. .....++.+.|+||+
T Consensus 372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d----NLtt~Itsl~Fn~d~ 447 (514)
T KOG2055|consen 372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD----NLTTAITSLQFNHDA 447 (514)
T ss_pred ecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh----hhheeeeeeeeCcch
Confidence 999999999998775456778899999999999999999999997642 2222222 223456679999999
Q ss_pred CEEEEEcC--CCeEEEEeCCCcceeecccc---cCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 453 SYVAAGSA--DGSVYIWSISKADIVRTLKE---HTAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 453 ~~l~~~~~--dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
++||.+|. +..+++-.+.+......++. .-+.|+|++|||.|.+|+.|..+|.+.+|
T Consensus 448 qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~ 509 (514)
T KOG2055|consen 448 QILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLF 509 (514)
T ss_pred hhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeE
Confidence 99988875 56799999998888777764 34568999999999999999999999999
No 94
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4e-30 Score=209.83 Aligned_cols=240 Identities=21% Similarity=0.304 Sum_probs=199.2
Q ss_pred ccceEEEEEecC-CCEEEEeeCCCeEEEEeCC-CCcceecccccccceeEEEEecCC-CEEEEEeCCCeEEEEEcCCCCe
Q 010470 225 EGGCASILFEYN-SARLISGGQDKSIKLWDTN-TGSLSSTLYGCLGSVLDLAITHDN-RSVIAASSSNNLYVWDVNSGRV 301 (510)
Q Consensus 225 ~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~ 301 (510)
.+.+..++|+++ .+.+++++.||++++||.. ...++..++.|...|.++.|++-. ..+++++-|++|++|+..-++.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S 139 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS 139 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence 457899999985 4678999999999999964 345788899999999999998854 5677889999999999999999
Q ss_pred eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcC-CCCEEEEecCCCcEEEEE
Q 010470 302 RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSM-DGQTIFSGHIDGNLRLWD 379 (510)
Q Consensus 302 ~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~-~~~~l~~~~~dg~i~i~d 379 (510)
+.++.+|..-|....|+|..++.++++|.|+++++||++..-....+..|. .+.|+.|+. +.+.+++|+.|+.|++||
T Consensus 140 v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wD 219 (311)
T KOG0277|consen 140 VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWD 219 (311)
T ss_pred eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEe
Confidence 999999999999999999999999999999999999998543333365554 799999987 667888999999999999
Q ss_pred CCCCc-eeeeecccccccEEEEEEcCC-CCEEEEEecCCcEEEEEcCCce-eeeEeecCCCeeecCceeEEEcC-CCCEE
Q 010470 380 IQTGK-LLSEVAAHSLAAVTSISLSRS-GNIILTSGRDNLHNLFDIRSLE-VCGSLRATGNRVASNWSRSCISP-DESYV 455 (510)
Q Consensus 380 ~~~~~-~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~s~-~~~~l 455 (510)
+++.+ ++..+.+|. -.|+.+.|||. ..+|++++.|-+++|||..... .+.+...|...+.. +.||+ ++.++
T Consensus 220 ir~~r~pl~eL~gh~-~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g----~Dws~~~~~~v 294 (311)
T KOG0277|consen 220 IRNLRTPLFELNGHG-LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCG----LDWSLFDPGQV 294 (311)
T ss_pred hhhccccceeecCCc-eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEec----cccccccCcee
Confidence 99854 566776665 89999999996 4588999999999999987443 33444445544443 66666 67899
Q ss_pred EEEcCCCeEEEEeC
Q 010470 456 AAGSADGSVYIWSI 469 (510)
Q Consensus 456 ~~~~~dg~i~iwd~ 469 (510)
|+++.|+.++||+.
T Consensus 295 As~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 295 ASTGWDELLYVWNP 308 (311)
T ss_pred eecccccceeeecc
Confidence 99999999999984
No 95
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.2e-30 Score=237.60 Aligned_cols=281 Identities=22% Similarity=0.374 Sum_probs=231.0
Q ss_pred cccceE---EEEEe-cCCCEEEEeeCCCeEEEEeCCCCc------ceecccccccceeEEEEecCCCEEEEEeCCCeEEE
Q 010470 224 HEGGCA---SILFE-YNSARLISGGQDKSIKLWDTNTGS------LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYV 293 (510)
Q Consensus 224 h~~~v~---~~~~s-~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 293 (510)
|...|. .+..+ |.+++|+|||.||.|++|+..... ...++..|...|.++....+++.|+++|.|-+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 444455 44444 467789999999999999985422 36778899999999999999999999999999999
Q ss_pred EEcCCC--CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE--eeee--------e--ecCceeEEEE
Q 010470 294 WDVNSG--RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC--VNTI--------I--FHSNCNALAF 359 (510)
Q Consensus 294 wd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~--------~--~~~~i~~i~~ 359 (510)
|+...+ -++.++..|.+.|.|+++...+...+++||-|+.|.+||++++.. +..+ . ...++.+++.
T Consensus 100 W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~ 179 (735)
T KOG0308|consen 100 WNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAM 179 (735)
T ss_pred eecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeec
Confidence 999877 577888999999999999433888999999999999999997732 2222 1 1235899999
Q ss_pred cCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCee
Q 010470 360 SMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRV 439 (510)
Q Consensus 360 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 439 (510)
++.|..|++|+..+.+++||.++.+.+..+.+|. ..|..+..++||..+++++.||+|++||+...+++.++..|...+
T Consensus 180 N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHT-dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~V 258 (735)
T KOG0308|consen 180 NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHT-DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGV 258 (735)
T ss_pred CCcceEEEecCcccceEEeccccccceeeeeccc-cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCce
Confidence 9999999999999999999999999999999887 999999999999999999999999999999999999998888775
Q ss_pred ecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 440 ASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 440 ~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
.. +..+|+-.++++|+.||.|+.-|+.+......+-....+|..+..+.+.+.+-+++.|+.|+-|
T Consensus 259 Wa----L~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW 324 (735)
T KOG0308|consen 259 WA----LQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRW 324 (735)
T ss_pred EE----EeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceec
Confidence 44 7788999999999999999999998843222222244566666666555555666677777766
No 96
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3e-29 Score=231.84 Aligned_cols=241 Identities=22% Similarity=0.360 Sum_probs=216.3
Q ss_pred ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccc-cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe
Q 010470 223 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYG-CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV 301 (510)
Q Consensus 223 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 301 (510)
.+.+.|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+ |...|.+++|. +..+.+|+.++.|..+|++..+.
T Consensus 215 ~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~ 292 (484)
T KOG0305|consen 215 FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH 292 (484)
T ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh
Confidence 3488999999999999999999999999999999999999988 99999999997 77799999999999999998775
Q ss_pred eEe-ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcC-CCCEEEEe--cCCCcEE
Q 010470 302 RHT-LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSM-DGQTIFSG--HIDGNLR 376 (510)
Q Consensus 302 ~~~-~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~-~~~~l~~~--~~dg~i~ 376 (510)
... +.+|...|+.+.|++ ++.++++|+.|+.+.|||.....++..+..| ..|.+++|+| ....||+| +.|++|+
T Consensus 293 ~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~ 371 (484)
T KOG0305|consen 293 VVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIK 371 (484)
T ss_pred hhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEE
Confidence 444 889999999999999 9999999999999999999877777777766 4599999999 56678875 4799999
Q ss_pred EEECCCCceeeeecccccccEEEEEEcCCCCEEEEE--ecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCE
Q 010470 377 LWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTS--GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESY 454 (510)
Q Consensus 377 i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 454 (510)
+||..++..+..+... +.|.++.|++..+-|+++ ..++.|.||+..+.+.+..+.+|...+.. ++++|||..
T Consensus 372 fwn~~~g~~i~~vdtg--sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~----la~SPdg~~ 445 (484)
T KOG0305|consen 372 FWNTNTGARIDSVDTG--SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLY----LALSPDGET 445 (484)
T ss_pred EEEcCCCcEecccccC--CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEE----EEECCCCCE
Confidence 9999999999888876 799999999998877765 45678999999999999999999988766 999999999
Q ss_pred EEEEcCCCeEEEEeCCCc
Q 010470 455 VAAGSADGSVYIWSISKA 472 (510)
Q Consensus 455 l~~~~~dg~i~iwd~~~~ 472 (510)
|++|+.|.++++|++-..
T Consensus 446 i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 446 IVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEEecccCcEEeccccCC
Confidence 999999999999998764
No 97
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.4e-30 Score=234.19 Aligned_cols=313 Identities=22% Similarity=0.346 Sum_probs=251.9
Q ss_pred HhhhhcCCceEEecccccccccccCCCcc-ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCC--cceeccc
Q 010470 188 KLAKQQVDGVVRRSEEGAEFFAESTVPST-CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG--SLSSTLY 264 (510)
Q Consensus 188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~ 264 (510)
.+.+++.||.++.|..+... ..|.. +..++..|...|+.+....+|+.|+++|.|-+|++|+...+ -+..++.
T Consensus 39 yLfTgGRDg~i~~W~~~~d~----~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDS----NEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred eEEecCCCceEEEecccccc----CCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 48899999999999865421 12222 58889999999999999999999999999999999999877 5678899
Q ss_pred ccccceeEEEE-ecCCCEEEEEeCCCeEEEEEcCCCC--ee--------Eeec-CCCCceEEEEEecCCCCEEEEEeCCC
Q 010470 265 GCLGSVLDLAI-THDNRSVIAASSSNNLYVWDVNSGR--VR--------HTLT-GHTDKVCAVDVSKISSRHVVSAAYDR 332 (510)
Q Consensus 265 ~~~~~v~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~--~~--------~~~~-~~~~~v~~i~~~~~~~~~l~s~~~dg 332 (510)
.|...|.|+++ -++...+++|+-|+.|.+||++++. .+ ..+. ++...|++++.++ .+..|++|+..+
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek 193 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEK 193 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCccc
Confidence 99999999999 8888999999999999999999772 22 2233 7889999999998 778999999999
Q ss_pred cEEEEECCCCeEeeeeeecC-ceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEE
Q 010470 333 TLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILT 411 (510)
Q Consensus 333 ~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 411 (510)
.+++||.++++.+..+.+|. +|.++..++||..+++++.||+|++||+...+++.++..|. ..|.++..+|+-.++++
T Consensus 194 ~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~-e~VWaL~~~~sf~~vYs 272 (735)
T KOG0308|consen 194 DLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHK-EGVWALQSSPSFTHVYS 272 (735)
T ss_pred ceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEecc-CceEEEeeCCCcceEEe
Confidence 99999999999888888774 59999999999999999999999999999999999999988 66999999999999999
Q ss_pred EecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc-------ceeecccc----
Q 010470 412 SGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA-------DIVRTLKE---- 480 (510)
Q Consensus 412 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~---- 480 (510)
|+.||.|..=|+++......+.....++.. +..+...+-+.+++.|+.|.-|...-. .+......
T Consensus 273 G~rd~~i~~Tdl~n~~~~tlick~daPv~~----l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~ 348 (735)
T KOG0308|consen 273 GGRDGNIYRTDLRNPAKSTLICKEDAPVLK----LHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNH 348 (735)
T ss_pred cCCCCcEEecccCCchhheEeecCCCchhh----hhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCc
Confidence 999999999999985443333333333332 444444445577788888888865321 11110000
Q ss_pred -------------cCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 481 -------------HTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 481 -------------~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
...+|...+.-.|.++++|=+..|.+.+||
T Consensus 349 ~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwD 391 (735)
T KOG0308|consen 349 SCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWD 391 (735)
T ss_pred cccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEE
Confidence 111334445556778999999999999997
No 98
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4.4e-28 Score=194.56 Aligned_cols=251 Identities=24% Similarity=0.378 Sum_probs=207.0
Q ss_pred CCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc-----eecccccccceeEEEEecC----CCEEE
Q 010470 213 VPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL-----SSTLYGCLGSVLDLAITHD----NRSVI 283 (510)
Q Consensus 213 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~~----~~~l~ 283 (510)
.|......-+.|.+.|.|.+|||+|.+|++|+.|.+|++.-.+...+ -..+..|.+.|..++|..+ +..|+
T Consensus 77 pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~ 156 (350)
T KOG0641|consen 77 PPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILA 156 (350)
T ss_pred CCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEE
Confidence 34445566778999999999999999999999999999987654332 2346679999999999643 44566
Q ss_pred EEe-CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec--------Cce
Q 010470 284 AAS-SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH--------SNC 354 (510)
Q Consensus 284 ~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------~~i 354 (510)
+++ .|..|++-|...|+..+.+.+|++.|.++-- . ++-++++|+.|.+|++||++-..++.++... +.+
T Consensus 157 s~gagdc~iy~tdc~~g~~~~a~sghtghilalys-w-n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessav 234 (350)
T KOG0641|consen 157 SAGAGDCKIYITDCGRGQGFHALSGHTGHILALYS-W-NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAV 234 (350)
T ss_pred ecCCCcceEEEeecCCCCcceeecCCcccEEEEEE-e-cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCccccee
Confidence 655 6788999999999999999999999988643 2 6889999999999999999998888877432 348
Q ss_pred eEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCc----eeee
Q 010470 355 NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL----EVCG 430 (510)
Q Consensus 355 ~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~ 430 (510)
.++++.|.|+.|++|..|....+||++.+++++.+..|. ..|.|+.|+|...|+++++.|..|++-|+... -++.
T Consensus 235 aav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phs-adir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~ 313 (350)
T KOG0641|consen 235 AAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHS-ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIM 313 (350)
T ss_pred EEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCc-cceeEEEeCCCceEEEEecccceEEEeecccchhhcCceE
Confidence 999999999999999999999999999999999999988 89999999999999999999999999998741 1122
Q ss_pred EeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470 431 SLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS 470 (510)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 470 (510)
....|..... .+.|+|..--+++.+.|.++.+|-++
T Consensus 314 vv~ehkdk~i----~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 314 VVAEHKDKAI----QCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEeccCceE----EEEecCccceeeeccCcceEEEeccC
Confidence 2222333322 27899999899999999999999764
No 99
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=3.7e-28 Score=234.27 Aligned_cols=247 Identities=14% Similarity=0.217 Sum_probs=186.5
Q ss_pred hcCCceEEecccccccccccCCCccceeeccccccceEEEEEecC-CCEEEEeeCCCeEEEEeCCCCc--------ceec
Q 010470 192 QQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYN-SARLISGGQDKSIKLWDTNTGS--------LSST 262 (510)
Q Consensus 192 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~--------~~~~ 262 (510)
|..++.+++|+.+. ..+...+.+|.++|.+++|+|+ +.+|++|+.||+|+|||+.++. ++..
T Consensus 50 GG~~gvI~L~~~~r---------~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~ 120 (568)
T PTZ00420 50 GGLIGAIRLENQMR---------KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI 120 (568)
T ss_pred CCceeEEEeeecCC---------CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEE
Confidence 34455556655332 2356788999999999999996 7899999999999999997642 2345
Q ss_pred ccccccceeEEEEecCCCEE-EEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 010470 263 LYGCLGSVLDLAITHDNRSV-IAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK 341 (510)
Q Consensus 263 ~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~ 341 (510)
+.+|...|.+++|+|++..+ ++++.|+.|++||+.+++....+. |...|.+++|+| ++.+|++++.|+.|++||+++
T Consensus 121 L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rs 198 (568)
T PTZ00420 121 LKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRK 198 (568)
T ss_pred eecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCC
Confidence 67899999999999998765 688999999999999998877776 667899999999 889999999999999999999
Q ss_pred CeEeeeeeecCc-e-----eEEEEcCCCCEEEEecCCC----cEEEEECCC-Cceeeeeccccc-ccEEEEEEcCCCCEE
Q 010470 342 GYCVNTIIFHSN-C-----NALAFSMDGQTIFSGHIDG----NLRLWDIQT-GKLLSEVAAHSL-AAVTSISLSRSGNII 409 (510)
Q Consensus 342 ~~~~~~~~~~~~-i-----~~i~~~~~~~~l~~~~~dg----~i~i~d~~~-~~~~~~~~~~~~-~~i~~i~~~~~~~~l 409 (510)
+..+..+..|.. + ....|++++.+|++++.++ .|++||+++ ++++..+..... +.+......++|.++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 999888877643 2 2234568889999877664 799999995 556655543321 233333345568899
Q ss_pred EEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCC
Q 010470 410 LTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE 452 (510)
Q Consensus 410 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 452 (510)
++|+.|+.|++|++..+.. ..+.. .....+...++|.|..
T Consensus 279 lsGkGD~tIr~~e~~~~~~-~~l~~--~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLGSI-RKVNE--YKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEECCCeEEEEEccCCcE-Eeecc--cccCCCccceEEcccc
Confidence 9999999999999987642 22221 1122233447788854
No 100
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=5.3e-29 Score=230.32 Aligned_cols=277 Identities=21% Similarity=0.402 Sum_probs=234.6
Q ss_pred cceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcce--ecccccccceeE-EEEec-CCCEEEEEeCCCeE
Q 010470 216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLS--STLYGCLGSVLD-LAITH-DNRSVIAASSSNNL 291 (510)
Q Consensus 216 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~-~~~~~-~~~~l~~~~~d~~i 291 (510)
+..+.+.||...|..+++.+. ..++++|.||++++|+-..+..+ ..+.+|.+.|.. +++.+ ++-.+++|+.|.+|
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred eeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 467789999999999988755 48999999999999998655543 346677777777 88875 55569999999999
Q ss_pred EEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEec
Q 010470 292 YVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGH 370 (510)
Q Consensus 292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~ 370 (510)
.+|.+....+...+.+|...|+++.... ++. +++||.|.++++|-. +++...+.+| ..|.++...|.+ .+++|+
T Consensus 84 ~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgs 158 (745)
T KOG0301|consen 84 IVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGS 158 (745)
T ss_pred EEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEecc
Confidence 9999999999999999999999998765 344 999999999999975 5555556666 458999998887 889999
Q ss_pred CCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcC
Q 010470 371 IDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP 450 (510)
Q Consensus 371 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 450 (510)
.|.+|++|. .++.+.++.+|. ..|+.+++-+++ .|++++.||.|++|++ +++.+....+|.+.+.+ +...+
T Consensus 159 aDKtIklWk--~~~~l~tf~gHt-D~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYs----is~~~ 229 (745)
T KOG0301|consen 159 ADKTIKLWK--GGTLLKTFSGHT-DCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYS----ISMAL 229 (745)
T ss_pred Ccceeeecc--CCchhhhhccch-hheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEE----EEecC
Confidence 999999997 488899999987 999999998864 5788999999999999 78888888888887765 77788
Q ss_pred CCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 451 DESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 451 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
++..|++++.|++++||+.. ++...+....-.|+++.+-++|. +++|++||.|+||+
T Consensus 230 ~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 230 SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFT 286 (745)
T ss_pred CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEE
Confidence 99999999999999999976 77777775666899999988885 88888999999994
No 101
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.7e-28 Score=201.75 Aligned_cols=234 Identities=20% Similarity=0.314 Sum_probs=208.4
Q ss_pred cccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 010470 262 TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK 341 (510)
Q Consensus 262 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~ 341 (510)
.+.+|..+++.+.|+.+|.+|++++.|..+.+|-..+|+.+.++.+|.+.|+|+.... +...+++|+.|.++++||+.+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCC
Confidence 3678999999999999999999999999999999889999999999999999999987 889999999999999999999
Q ss_pred CeEeeeeeecCceeEEEEcCCCCEEEEecC-----CCcEEEEECC-------CCceeeeecccccccEEEEEEcCCCCEE
Q 010470 342 GYCVNTIIFHSNCNALAFSMDGQTIFSGHI-----DGNLRLWDIQ-------TGKLLSEVAAHSLAAVTSISLSRSGNII 409 (510)
Q Consensus 342 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-----dg~i~i~d~~-------~~~~~~~~~~~~~~~i~~i~~~~~~~~l 409 (510)
|+++.++..+..+..+.|+++|++++..+. .+.|.+||++ ...++..+..+. +.++.+-|+|-+.+|
T Consensus 84 Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~-skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 84 GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD-SKITSALWGPLGETI 162 (327)
T ss_pred CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc-cceeeeeecccCCEE
Confidence 999999999999999999999998887653 4679999998 445677777776 899999999999999
Q ss_pred EEEecCCcEEEEEcCCce-eeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEE
Q 010470 410 LTSGRDNLHNLFDIRSLE-VCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSC 488 (510)
Q Consensus 410 ~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 488 (510)
++|..||.|.+||++++. .+.....|... ++.++++||..++++++.|.+-++||+.+-++++++. ...||++.
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~----Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~a 237 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSK----INDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTA 237 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccc----cccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccce
Confidence 999999999999999974 44444555544 4559999999999999999999999999999999887 46799999
Q ss_pred EEeCCCCcEEEeeC
Q 010470 489 SWSGLGKPLASADK 502 (510)
Q Consensus 489 ~~~~~~~~l~s~~~ 502 (510)
+++|....++.||.
T Consensus 238 aisP~~d~VilgGG 251 (327)
T KOG0643|consen 238 AISPLLDHVILGGG 251 (327)
T ss_pred ecccccceEEecCC
Confidence 99998877776653
No 102
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=1.9e-28 Score=231.08 Aligned_cols=309 Identities=17% Similarity=0.287 Sum_probs=262.5
Q ss_pred chHHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc
Q 010470 185 GLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY 264 (510)
Q Consensus 185 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 264 (510)
.+..+..|+..|.+.+|+... .+.+++++++...|+++.=+|-=+.++.|..+|+|.|+++..++.+.++.
T Consensus 171 YLNKIvvGs~~G~lql~Nvrt---------~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk 241 (910)
T KOG1539|consen 171 YLNKIVVGSSQGRLQLWNVRT---------GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK 241 (910)
T ss_pred heeeEEEeecCCcEEEEEecc---------CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE
Confidence 345566778888888888554 56889999999999999999988899999999999999999999999998
Q ss_pred ccccceeEEEEecCCCEEEEE-eCCCeEEEEEcCCCCeeEe---------------------------------------
Q 010470 265 GCLGSVLDLAITHDNRSVIAA-SSSNNLYVWDVNSGRVRHT--------------------------------------- 304 (510)
Q Consensus 265 ~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~--------------------------------------- 304 (510)
...+.|+.++|..||+.+++. +..|.+.+||++..+.+..
T Consensus 242 ~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~d 321 (910)
T KOG1539|consen 242 QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGD 321 (910)
T ss_pred ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCC
Confidence 667999999999999876555 4568999999874311100
Q ss_pred --------------------------------------------------------------------------------
Q 010470 305 -------------------------------------------------------------------------------- 304 (510)
Q Consensus 305 -------------------------------------------------------------------------------- 304 (510)
T Consensus 322 g~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~f 401 (910)
T KOG1539|consen 322 GVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEF 401 (910)
T ss_pred CcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceee
Confidence
Q ss_pred -------------------------------------e-----cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 010470 305 -------------------------------------L-----TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG 342 (510)
Q Consensus 305 -------------------------------------~-----~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~ 342 (510)
+ +.....+++++.++ .|++.+.|+..|.|-+|++.+|
T Consensus 402 a~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSG 480 (910)
T KOG1539|consen 402 AFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSG 480 (910)
T ss_pred ecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccC
Confidence 0 01124567777777 7888888888899999999888
Q ss_pred eEeeee----eecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcE
Q 010470 343 YCVNTI----IFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLH 418 (510)
Q Consensus 343 ~~~~~~----~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i 418 (510)
-....+ .+..+|++++...-++.+++++.+|.+.+||..+......+... .++.++.++.....++.+..|-.|
T Consensus 481 i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~--~~~~~iv~hr~s~l~a~~~ddf~I 558 (910)
T KOG1539|consen 481 IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG--SSITGIVYHRVSDLLAIALDDFSI 558 (910)
T ss_pred eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC--CCcceeeeeehhhhhhhhcCceeE
Confidence 887777 34466999999988899999999999999999988888777766 688999999999999999999999
Q ss_pred EEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEE
Q 010470 419 NLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLA 498 (510)
Q Consensus 419 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 498 (510)
.++|..+.+.++.|.+|++.+.. ++|||||++|++++.|++|++||+.++.++..+. -..+++++.|+|+|.+|+
T Consensus 559 ~vvD~~t~kvvR~f~gh~nritd----~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LA 633 (910)
T KOG1539|consen 559 RVVDVVTRKVVREFWGHGNRITD----MTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLA 633 (910)
T ss_pred EEEEchhhhhhHHhhccccceee----eEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEE
Confidence 99999999999999999988876 9999999999999999999999999999987775 456889999999999999
Q ss_pred EeeCC-CeEEEcC
Q 010470 499 SADKN-GVVCVWT 510 (510)
Q Consensus 499 s~~~d-g~i~iwd 510 (510)
|...| .-|++|.
T Consensus 634 T~Hvd~~gIylWs 646 (910)
T KOG1539|consen 634 TVHVDQNGIYLWS 646 (910)
T ss_pred EEEecCceEEEEE
Confidence 99988 5699994
No 103
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=7.2e-29 Score=241.31 Aligned_cols=281 Identities=21% Similarity=0.285 Sum_probs=228.8
Q ss_pred HHhhhhc--CCceEEecccccccc---cccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC-----
Q 010470 187 EKLAKQQ--VDGVVRRSEEGAEFF---AESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT----- 256 (510)
Q Consensus 187 ~~~~~~~--~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~----- 256 (510)
..++++. .|+.+++|....... .....-.+...+...|.+.|+|+.|+|||.+||+||.|+.|.||....
T Consensus 26 ~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~ 105 (942)
T KOG0973|consen 26 VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGT 105 (942)
T ss_pred eeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcc
Confidence 4566776 788888998554221 111213456677889999999999999999999999999999999872
Q ss_pred --C-----------cceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCC
Q 010470 257 --G-----------SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR 323 (510)
Q Consensus 257 --~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 323 (510)
| +....+.+|.+.|.+++|+|++.++++++.|++|.|||..+.+.+..+.+|.+.|.++.|.| -+.
T Consensus 106 ~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gk 184 (942)
T KOG0973|consen 106 VFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGK 184 (942)
T ss_pred cccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECC-ccC
Confidence 1 24566789999999999999999999999999999999999999999999999999999999 899
Q ss_pred EEEEEeCCCcEEEEECCCCeEeeeeeec-------CceeEEEEcCCCCEEEEecC----CCcEEEEECCCCceeeeeccc
Q 010470 324 HVVSAAYDRTLKVWDLHKGYCVNTIIFH-------SNCNALAFSMDGQTIFSGHI----DGNLRLWDIQTGKLLSEVAAH 392 (510)
Q Consensus 324 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~i~~i~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~ 392 (510)
+|++-+.|++|+||.+.+-...+.+..+ .-+..+.|+|||.+|++... -.++.|.+-.+.+.-..+.+|
T Consensus 185 y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH 264 (942)
T KOG0973|consen 185 YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGH 264 (942)
T ss_pred eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecC
Confidence 9999999999999998775565555443 23788999999999998542 336888887777777888888
Q ss_pred ccccEEEEEEcCC-----CC------------EEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEE
Q 010470 393 SLAAVTSISLSRS-----GN------------IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 455 (510)
Q Consensus 393 ~~~~i~~i~~~~~-----~~------------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 455 (510)
. .++.++.|+|. .. .+++|+.|+.|.||.....+++.... +.....+..++|+|||..|
T Consensus 265 ~-~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~---~lf~~SI~DmsWspdG~~L 340 (942)
T KOG0973|consen 265 S-APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH---NLFNKSIVDMSWSPDGFSL 340 (942)
T ss_pred C-CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh---hhhcCceeeeeEcCCCCeE
Confidence 8 79999999981 11 67889999999999987766654432 2223345669999999999
Q ss_pred EEEcCCCeEEEEeCCCc
Q 010470 456 AAGSADGSVYIWSISKA 472 (510)
Q Consensus 456 ~~~~~dg~i~iwd~~~~ 472 (510)
+++|.||+|.++.+...
T Consensus 341 facS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 341 FACSLDGTVALIHFEEK 357 (942)
T ss_pred EEEecCCeEEEEEcchH
Confidence 99999999999998753
No 104
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=9.7e-29 Score=218.14 Aligned_cols=263 Identities=19% Similarity=0.289 Sum_probs=213.2
Q ss_pred HhhhhcCCceEEecccccccc-----cc------cCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC
Q 010470 188 KLAKQQVDGVVRRSEEGAEFF-----AE------STVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT 256 (510)
Q Consensus 188 ~~~~~~~d~~~~~~~~~~~~~-----~~------~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 256 (510)
...+.+.++.+..|....... .. ...|.+... ++|...|.+++.|+||+||++|+.|..|.||+..+
T Consensus 156 ~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r--~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t 233 (479)
T KOG0299|consen 156 RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR--KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDT 233 (479)
T ss_pred ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc--ccccceeEEEEEcCCCcEEEecCCCceEEEecCcc
Confidence 445667788888887443221 11 223333333 59999999999999999999999999999999999
Q ss_pred CcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEE
Q 010470 257 GSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV 336 (510)
Q Consensus 257 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~i 336 (510)
.+.+..+.+|.+.|.+++|-.....+++++.|..|++|+++....+.++.+|.+.|.+|.... -...+-+|+.|+++++
T Consensus 234 ~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rl 312 (479)
T KOG0299|consen 234 LEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRL 312 (479)
T ss_pred cchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhc-ccceEEeccccceeEE
Confidence 999999999999999999998889999999999999999999999999999999999998876 5666777779999999
Q ss_pred EECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccccc-----------ccEEEEEEcCC
Q 010470 337 WDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL-----------AAVTSISLSRS 405 (510)
Q Consensus 337 wd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----------~~i~~i~~~~~ 405 (510)
|++.....+-.....+.+-|++|- +...+++|+.+|.|.+|++-+.+++......+. ..|++++..|.
T Consensus 313 wKi~eesqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~ 391 (479)
T KOG0299|consen 313 WKIPEESQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPG 391 (479)
T ss_pred EeccccceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEeccc
Confidence 999655544444444578999987 667889999999999999999988877654321 27899999999
Q ss_pred CCEEEEEecCCcEEEEEcCCc----eeeeEeecCCCeeecCceeEEEcCCCCEEEEEc
Q 010470 406 GNIILTSGRDNLHNLFDIRSL----EVCGSLRATGNRVASNWSRSCISPDESYVAAGS 459 (510)
Q Consensus 406 ~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 459 (510)
.+++++|+.+|.|++|-+..+ .++..++ ....++.++|+++|++|++|.
T Consensus 392 sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-----~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 392 SDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-----LVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred CceEEecCCCCceEEEEecCCccccceeeecc-----cccEEEEEEEccCCCEEEEec
Confidence 999999999999999998765 2222222 334456699999999777764
No 105
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.97 E-value=5.2e-29 Score=221.88 Aligned_cols=278 Identities=20% Similarity=0.329 Sum_probs=232.3
Q ss_pred cccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCC---cceeccc--ccccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470 222 NAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG---SLSSTLY--GCLGSVLDLAITHDNRSVIAASSSNNLYVWDV 296 (510)
Q Consensus 222 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 296 (510)
-.|..-|.++++|...++++||+ .|.|+|||+... .++..+. ...+.|.++...|||+.|++|+.-.++.|||+
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 36778889999999999999998 578999999532 2233332 34678899999999999999999999999999
Q ss_pred CCCCee--EeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcCCCCEEEEecCCC
Q 010470 297 NSGRVR--HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDG 373 (510)
Q Consensus 297 ~~~~~~--~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg 373 (510)
....+. ..+....-..++++.+| +.+..+++..||.|.|||+.+...++.+.++. .+.||.+++||..|.+|+-|.
T Consensus 495 AapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence 765543 33444445677889999 88999999999999999999999999999885 499999999999999999999
Q ss_pred cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCC
Q 010470 374 NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES 453 (510)
Q Consensus 374 ~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 453 (510)
+|+.||++.++.+...... +.|.++.++|++.++++|-.++.+.|......+. ..+..|...+. ++.|++.|+
T Consensus 574 tvRcWDlregrqlqqhdF~--SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-yqlhlheScVL----SlKFa~cGk 646 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQQHDFS--SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-YQLHLHESCVL----SLKFAYCGK 646 (705)
T ss_pred ceeehhhhhhhhhhhhhhh--hhheecccCCCccceeeecccCcEEEEecCCccc-eeecccccEEE----EEEecccCc
Confidence 9999999999887766554 7899999999999999999999998888765443 23333444443 389999999
Q ss_pred EEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 454 YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 454 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
++++.+.|+-+..|.+.-|..+...+ ..++|.++.+|.|.++++||+.|....||
T Consensus 647 wfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 647 WFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred eeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEE
Confidence 99999999999999999888776665 46789999999999999999999887776
No 106
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.97 E-value=3.3e-27 Score=219.43 Aligned_cols=268 Identities=16% Similarity=0.149 Sum_probs=207.8
Q ss_pred CCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEE-EEeCCCeEEEEEcCCCCeeEeecCCCCceEEE
Q 010470 237 SARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVI-AASSSNNLYVWDVNSGRVRHTLTGHTDKVCAV 315 (510)
Q Consensus 237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i 315 (510)
+..+++++.|+.|.+||+.+++.+..+..+. .+.+++|+|++..++ +++.++.|++||+.+++....+..+.. +..+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~ 78 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF 78 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE
Confidence 3578899999999999999998888777654 467899999999774 566789999999999888777765443 5678
Q ss_pred EEecCCCCEE-EEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCC-cEEEEECCCCceeeeecccc
Q 010470 316 DVSKISSRHV-VSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDG-NLRLWDIQTGKLLSEVAAHS 393 (510)
Q Consensus 316 ~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~ 393 (510)
.|+| +++.+ ++++.++.|++||+.++..+..+.....+.+++|+|+|.+++++..++ .+.+||..+++........
T Consensus 79 ~~~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~- 156 (300)
T TIGR03866 79 ALHP-NGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD- 156 (300)
T ss_pred EECC-CCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-
Confidence 8998 55555 455668999999999988887776666688999999999999888765 4677899888776554433
Q ss_pred cccEEEEEEcCCCCEEEEE-ecCCcEEEEEcCCceeeeEeecCCCee---ecCceeEEEcCCCCEEEE-EcCCCeEEEEe
Q 010470 394 LAAVTSISLSRSGNIILTS-GRDNLHNLFDIRSLEVCGSLRATGNRV---ASNWSRSCISPDESYVAA-GSADGSVYIWS 468 (510)
Q Consensus 394 ~~~i~~i~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~~l~~-~~~dg~i~iwd 468 (510)
..+.++.|+|+|.+++++ ..++.|.+||+.+++....+....... ......++|+|+|+++++ .+.++.|.+||
T Consensus 157 -~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d 235 (300)
T TIGR03866 157 -QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVD 235 (300)
T ss_pred -CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEE
Confidence 456789999999988655 468999999999988766654322111 111234789999998654 45567899999
Q ss_pred CCCcceeecccccCcCEEEEEEeCCCCcEEEe-eCCCeEEEcC
Q 010470 469 ISKADIVRTLKEHTAPVLSCSWSGLGKPLASA-DKNGVVCVWT 510 (510)
Q Consensus 469 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~iwd 510 (510)
+.+++.+..+. +...+.+++|+|+|++|+++ +.+|.|.+||
T Consensus 236 ~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 236 AKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred CCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 99888776553 44578999999999998876 5689999997
No 107
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.1e-28 Score=226.86 Aligned_cols=292 Identities=18% Similarity=0.276 Sum_probs=235.0
Q ss_pred ceeeccccccceEEEEEecC-----------CCEEEEeeCCCeEEEEeCCCCcce-------------e-----------
Q 010470 217 CKHKINAHEGGCASILFEYN-----------SARLISGGQDKSIKLWDTNTGSLS-------------S----------- 261 (510)
Q Consensus 217 ~~~~~~~h~~~v~~~~~s~~-----------~~~l~s~~~dg~i~iwd~~~~~~~-------------~----------- 261 (510)
..+.+--|...|+.+.--|. ...|+|++.|++|++||+..+..- .
T Consensus 361 k~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~ 440 (1080)
T KOG1408|consen 361 KCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIM 440 (1080)
T ss_pred ceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhh
Confidence 34455678888888766551 236899999999999999752110 0
Q ss_pred -------------cccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecC--CCCEEE
Q 010470 262 -------------TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKI--SSRHVV 326 (510)
Q Consensus 262 -------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~~~~l~ 326 (510)
...+....+.+++.+|+|++|++|..-|.++||++...+....+..|...|.|+.|+.. ...+|+
T Consensus 441 ~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLA 520 (1080)
T KOG1408|consen 441 HDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLA 520 (1080)
T ss_pred hhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhh
Confidence 00112347899999999999999999999999999999999999999999999999863 357899
Q ss_pred EEeCCCcEEEEECCCCe-Eeeeeeec-CceeEEEEcCCC--CEEEEecCCCcEEEEECCCCceeeeeccc----ccccEE
Q 010470 327 SAAYDRTLKVWDLHKGY-CVNTIIFH-SNCNALAFSMDG--QTIFSGHIDGNLRLWDIQTGKLLSEVAAH----SLAAVT 398 (510)
Q Consensus 327 s~~~dg~i~iwd~~~~~-~~~~~~~~-~~i~~i~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~i~ 398 (510)
+++.|+.|.|||+.... +++++..| +.|+++.|..+| ..+++++.|..|.+--.........+..+ ....+.
T Consensus 521 SasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlY 600 (1080)
T KOG1408|consen 521 SASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLY 600 (1080)
T ss_pred hccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEE
Confidence 99999999999997553 55666665 459999998877 67888888887765333221111112111 125789
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecc
Q 010470 399 SISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTL 478 (510)
Q Consensus 399 ~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 478 (510)
.+.+.|+.+++++++.|..|+|||+.+++..+.|++....-. ....+...|.|.||++.+.|.++.++|..+|+++...
T Consensus 601 Dm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG-~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m 679 (1080)
T KOG1408|consen 601 DMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEG-DLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM 679 (1080)
T ss_pred EeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCC-ceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh
Confidence 999999999999999999999999999999999987554322 2334788999999999999999999999999999999
Q ss_pred cccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 479 KEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 479 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
.+|...|+++.|.+|.+.|++.+.||+|.||
T Consensus 680 ~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW 710 (1080)
T KOG1408|consen 680 TGHSEAVTGVKFLNDCKHLISVSGDGCIFVW 710 (1080)
T ss_pred cCcchheeeeeecccchhheeecCCceEEEE
Confidence 9999999999999999999999999999999
No 108
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.1e-27 Score=226.64 Aligned_cols=278 Identities=21% Similarity=0.329 Sum_probs=230.7
Q ss_pred cccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCC-cceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC
Q 010470 222 NAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG-SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR 300 (510)
Q Consensus 222 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 300 (510)
-+|+++-+.++|.|+|.+|++++.||.|++|+..+. ....++..+...|.+++. ++.+|++|+.+++|.+|.+.++.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 379999999999999999999999999999998765 445555547777777776 45689999999999999999888
Q ss_pred eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEE
Q 010470 301 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWD 379 (510)
Q Consensus 301 ~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d 379 (510)
.-..+...+-++.+++|+. ++.+++.||.|-.|++.++.+......+..+ .+|.++.|+|.+++|++.+.||.|++||
T Consensus 88 ~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred ccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 7666666778899999988 8999999999999999999988888887776 5699999999999999999999999999
Q ss_pred CCCCceeeeeccc-------ccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCC
Q 010470 380 IQTGKLLSEVAAH-------SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE 452 (510)
Q Consensus 380 ~~~~~~~~~~~~~-------~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 452 (510)
+.++.....+..- ....+..++|+|+|..+++.+.|+.|++|+..++.....++..... +.++.+.|+|+|
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~s--s~~~~~~wsPnG 244 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSS--SKFSDLQWSPNG 244 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccc--cceEEEEEcCCC
Confidence 9988766655431 1246778899999999999999999999999999988877654433 336779999999
Q ss_pred CEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEE
Q 010470 453 SYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCV 508 (510)
Q Consensus 453 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i 508 (510)
.|||+++.||.|.|||+.+... ......|.+++|.|+++.+-.-...|...+
T Consensus 245 ~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~ 296 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGV 296 (933)
T ss_pred cEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeecccccc
Confidence 9999999999999999988322 223567999999999886655544554443
No 109
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=9.6e-28 Score=218.29 Aligned_cols=292 Identities=19% Similarity=0.280 Sum_probs=234.4
Q ss_pred cCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCE-EEEEeCCC
Q 010470 211 STVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRS-VIAASSSN 289 (510)
Q Consensus 211 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~ 289 (510)
.++|..|...+.||++.|.|+..+|.|.+|++|+.||+|+||.+.+|.++.++.. .+.|.|++|+|.+.. ++++....
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~ 464 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGE 464 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecC
Confidence 3578889999999999999999999999999999999999999999999988753 568999999997653 22222222
Q ss_pred eEEEEEcCCC-------------------------------------CeeEeecCCCCceEEEEEecCCCCEEEEEeCC-
Q 010470 290 NLYVWDVNSG-------------------------------------RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD- 331 (510)
Q Consensus 290 ~i~iwd~~~~-------------------------------------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d- 331 (510)
.+.|.+..-| .-++..-.|...|..+.|+. .|.+|++...+
T Consensus 465 ~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~ 543 (733)
T KOG0650|consen 465 CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDS 543 (733)
T ss_pred ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCC
Confidence 3333332111 01223334788999999998 88999887653
Q ss_pred --CcEEEEECCCCeEeeee-eecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCE
Q 010470 332 --RTLKVWDLHKGYCVNTI-IFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNI 408 (510)
Q Consensus 332 --g~i~iwd~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 408 (510)
..|.|+++.......-| ...+.+.++.|+|...+|++++. ..|++||+.....+..+.... ..|.+++++|.|..
T Consensus 544 ~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~-kwiS~msihp~GDn 621 (733)
T KOG0650|consen 544 GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGS-KWISSMSIHPNGDN 621 (733)
T ss_pred CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCC-eeeeeeeecCCCCe
Confidence 57899999766655445 33456999999999999998886 489999998888887777665 78999999999999
Q ss_pred EEEEecCCcEEEEEcCC-ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC------C---cceeecc
Q 010470 409 ILTSGRDNLHNLFDIRS-LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS------K---ADIVRTL 478 (510)
Q Consensus 409 l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~------~---~~~~~~~ 478 (510)
|++++.|+.+..||+.- .++.+++..|...+.. ++|++.-.++++|+.||++.||.-. . --++..+
T Consensus 622 li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~----Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L 697 (733)
T KOG0650|consen 622 LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRS----VAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRL 697 (733)
T ss_pred EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhh----hhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeec
Confidence 99999999999999974 5667777777777665 8999999999999999999998521 1 1346778
Q ss_pred cccCcC----EEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 479 KEHTAP----VLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 479 ~~~~~~----v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
++|... |.++.|+|.-.+|+++|.||+|++|.
T Consensus 698 ~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 698 RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred cCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 888655 89999999999999999999999995
No 110
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=4.1e-27 Score=196.30 Aligned_cols=287 Identities=18% Similarity=0.279 Sum_probs=223.8
Q ss_pred ccccccceEEEEEec-CCCEEEEeeCCCeEEEEeCCCCcc----------e-----ecccccccceeEEEEec-CCCEEE
Q 010470 221 INAHEGGCASILFEY-NSARLISGGQDKSIKLWDTNTGSL----------S-----STLYGCLGSVLDLAITH-DNRSVI 283 (510)
Q Consensus 221 ~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~----------~-----~~~~~~~~~v~~~~~~~-~~~~l~ 283 (510)
...|.|.|+++.+.+ .|+++++|+.||.|.+||++.... . ..-.+|.-.|.++.|-| |...+.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 346889999999988 689999999999999999975320 1 11236788999999988 455777
Q ss_pred EEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCC--CCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEc
Q 010470 284 AASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKIS--SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFS 360 (510)
Q Consensus 284 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~ 360 (510)
+++.|.++++||.++.+....|+ ..+.|++-+++|.. ..++++|..|-.|++.|+.+|.+..++.+|. .|.++.|+
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred cccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence 88899999999999988887777 56788888888853 3567888888999999999999999999885 59999999
Q ss_pred CCCCE-EEEecCCCcEEEEECCCC-ceeeee-------------cccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC
Q 010470 361 MDGQT-IFSGHIDGNLRLWDIQTG-KLLSEV-------------AAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS 425 (510)
Q Consensus 361 ~~~~~-l~~~~~dg~i~i~d~~~~-~~~~~~-------------~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~ 425 (510)
|...+ |++|+.||.|++||++.. .+...+ ...+.+.+.+++|+.++.++++++.|..+++|+..+
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence 97665 568999999999999854 222222 122337899999999999999999999999999987
Q ss_pred ceeeeEeec---CCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeC
Q 010470 426 LEVCGSLRA---TGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADK 502 (510)
Q Consensus 426 ~~~~~~~~~---~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 502 (510)
|.....-.+ +.......+. +. +.+...++---.++.+.++++-.+..+..+..|...|.+.++-|+-....+|+.
T Consensus 278 G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~ 355 (397)
T KOG4283|consen 278 GRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDM 355 (397)
T ss_pred CcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcccc
Confidence 654322111 1111111111 12 334444444455688999999999999999999989999999999999999999
Q ss_pred CCeEEEcC
Q 010470 503 NGVVCVWT 510 (510)
Q Consensus 503 dg~i~iwd 510 (510)
|+.|..|.
T Consensus 356 d~ni~~w~ 363 (397)
T KOG4283|consen 356 NGNIYMWS 363 (397)
T ss_pred CCcccccc
Confidence 99999883
No 111
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.2e-27 Score=211.68 Aligned_cols=242 Identities=24% Similarity=0.350 Sum_probs=200.1
Q ss_pred ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcC-------
Q 010470 225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVN------- 297 (510)
Q Consensus 225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~------- 297 (510)
.|+|.|++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|-.+|+++.|+.||.+|++|+.||.|.+|.+.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred --CCCeeEeecCCCCceEEEEEecC-CCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCc
Q 010470 298 --SGRVRHTLTGHTDKVCAVDVSKI-SSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGN 374 (510)
Q Consensus 298 --~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~ 374 (510)
+-++.+.+..|+-+|+++...+. ...+++++|.|.++++||+..|..+.++..+..+.+++++|.+..+++|+.+|.
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~ 240 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGK 240 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcce
Confidence 34578899999999999998874 457899999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCE
Q 010470 375 LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESY 454 (510)
Q Consensus 375 i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 454 (510)
|.+.++....... ..+..=.+++.+. .+..+.++.+. ..+++++++.||..
T Consensus 241 I~~~~~~~~~~~~-------~~v~~k~~~~~~t--------------------~~~~~~Gh~~~--~~ITcLais~Dgtl 291 (476)
T KOG0646|consen 241 IFQNLLFKLSGQS-------AGVNQKGRHEENT--------------------QINVLVGHENE--SAITCLAISTDGTL 291 (476)
T ss_pred EEeeehhcCCccc-------ccccccccccccc--------------------eeeeeccccCC--cceeEEEEecCccE
Confidence 9998875433210 1111111111111 11222233221 45667999999999
Q ss_pred EEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCC
Q 010470 455 VAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGK 495 (510)
Q Consensus 455 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 495 (510)
|++|+.||.|+|||+.+.++++++..-.++|+.+.+.|-.+
T Consensus 292 LlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 292 LLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred EEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence 99999999999999999999998886778899998865433
No 112
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=8.3e-26 Score=210.02 Aligned_cols=284 Identities=15% Similarity=0.220 Sum_probs=215.7
Q ss_pred hhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEE-EEeeCCCeEEEEeCCCCcceeccccccc
Q 010470 190 AKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARL-ISGGQDKSIKLWDTNTGSLSSTLYGCLG 268 (510)
Q Consensus 190 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 268 (510)
++...|+.+.+|+... .++...+.+|.. +.+++|+|+|..+ ++++.++.|++||..+++....+..+..
T Consensus 5 ~s~~~d~~v~~~d~~t---------~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 74 (300)
T TIGR03866 5 VSNEKDNTISVIDTAT---------LEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD 74 (300)
T ss_pred EEecCCCEEEEEECCC---------CceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC
Confidence 4556788899888543 234555665544 6789999999976 5677889999999999887776655433
Q ss_pred ceeEEEEecCCCEEEEEe-CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCC-cEEEEECCCCeEee
Q 010470 269 SVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR-TLKVWDLHKGYCVN 346 (510)
Q Consensus 269 ~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~ 346 (510)
+..++|+|+++.+++++ .++.+++||+.+++.+..+.. ...+.++.|+| ++..+++++.++ .+.+||..++....
T Consensus 75 -~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~ 151 (300)
T TIGR03866 75 -PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVD 151 (300)
T ss_pred -ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEE
Confidence 56789999999876654 689999999998887777653 34468899999 788888887665 57788998888776
Q ss_pred eeeecCceeEEEEcCCCCEEEEe-cCCCcEEEEECCCCceeeeecccc------cccEEEEEEcCCCCEEEE-EecCCcE
Q 010470 347 TIIFHSNCNALAFSMDGQTIFSG-HIDGNLRLWDIQTGKLLSEVAAHS------LAAVTSISLSRSGNIILT-SGRDNLH 418 (510)
Q Consensus 347 ~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~------~~~i~~i~~~~~~~~l~~-~~~d~~i 418 (510)
.......+.+++|+|+|.+++++ ..+|.|++||+.+++.+..+.... ......+.|+|+++++++ .+.++.+
T Consensus 152 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i 231 (300)
T TIGR03866 152 NVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRV 231 (300)
T ss_pred EEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeE
Confidence 66555667889999999988654 468999999999988776654221 113456889999998655 4556789
Q ss_pred EEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEE-cCCCeEEEEeCCCcceeecccccCcCEEEEEEeC
Q 010470 419 NLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAG-SADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 492 (510)
Q Consensus 419 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 492 (510)
.+||+.+++....+.... .+..++|+|+|++|+++ +.+|.|.+||+.+++.+..+... ..+++++++|
T Consensus 232 ~v~d~~~~~~~~~~~~~~-----~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 232 AVVDAKTYEVLDYLLVGQ-----RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEEECCCCcEEEEEEeCC-----CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 999999888766553222 23458999999999886 46899999999999999888755 4558888875
No 113
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=4.1e-26 Score=203.69 Aligned_cols=308 Identities=19% Similarity=0.270 Sum_probs=240.8
Q ss_pred HhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc--------
Q 010470 188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL-------- 259 (510)
Q Consensus 188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~-------- 259 (510)
..+++..+|.+.+|..+.. ...+...+|.++|.+++.-.+|.+| +|+.|..|..||-+-.+.
T Consensus 259 dviTgDS~G~i~Iw~~~~~---------~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~ 328 (626)
T KOG2106|consen 259 DVITGDSGGNILIWSKGTN---------RISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQ 328 (626)
T ss_pred CEEeecCCceEEEEeCCCc---------eEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchh
Confidence 4567888899999987652 2233334999999999999999655 599999999998421000
Q ss_pred ---e-----------------------------ecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecC
Q 010470 260 ---S-----------------------------STLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTG 307 (510)
Q Consensus 260 ---~-----------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 307 (510)
+ ....+|....+.++.+|+...+++++.|+.+++|+ ..++..+..
T Consensus 329 ~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~- 405 (626)
T KOG2106|consen 329 FGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI- 405 (626)
T ss_pred cCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-
Confidence 0 11246777888999999999999999999999999 455555544
Q ss_pred CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCC-Ccee
Q 010470 308 HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQT-GKLL 386 (510)
Q Consensus 308 ~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~ 386 (510)
...++.|+.|+| .+ .++.|+..|...+.|.++...+.......+++++.|+|+|.+|++|+.|+.|++|-+.. +...
T Consensus 406 ~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y 483 (626)
T KOG2106|consen 406 IEDPAECADFHP-SG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKY 483 (626)
T ss_pred ecCceeEeeccC-cc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEE
Confidence 467889999999 55 99999999999999999977776666677899999999999999999999999998854 5555
Q ss_pred eeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeee--------------EeecCCCeeecCceeEEEcCCC
Q 010470 387 SEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCG--------------SLRATGNRVASNWSRSCISPDE 452 (510)
Q Consensus 387 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--------------~~~~~~~~~~~~~~~~~~s~~~ 452 (510)
.....++.++|+.+.|++|++++.+.+.|-.|..|.....+... -|..........+..++-+.+.
T Consensus 484 ~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~ 563 (626)
T KOG2106|consen 484 SRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCE 563 (626)
T ss_pred EEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhh
Confidence 55555555899999999999999999999999999543221111 1111222223344446667788
Q ss_pred CEEEEEcCCCeEEEEeCCCcc---eeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 453 SYVAAGSADGSVYIWSISKAD---IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 453 ~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+.+++|...|+|++|...--+ +...+.+|++.|++++|..+...|++.+.|.+|..|+
T Consensus 564 ~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 564 KLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWR 624 (626)
T ss_pred hhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEE
Confidence 999999999999999876543 3456678999999999999988999888999999995
No 114
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.96 E-value=5.8e-27 Score=214.86 Aligned_cols=280 Identities=21% Similarity=0.331 Sum_probs=214.0
Q ss_pred EEEec---CCCEEEEeeCCCeEEEEeCCCCcc------eecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe
Q 010470 231 ILFEY---NSARLISGGQDKSIKLWDTNTGSL------SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV 301 (510)
Q Consensus 231 ~~~s~---~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 301 (510)
..|++ ....|+.+..||.|.++|...... +.....|.+.|.++.|-|....|++++.|.++++||+.++++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 44544 345789999999999999865433 245568999999999999778899999999999999999988
Q ss_pred eEe--ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe--------------------Eee-------eeeec-
Q 010470 302 RHT--LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY--------------------CVN-------TIIFH- 351 (510)
Q Consensus 302 ~~~--~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~--------------------~~~-------~~~~~- 351 (510)
... +.+|.+.|.+++|.|.+...|++|+.||.|.|||++-.. +.. ....+
T Consensus 135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s 214 (720)
T KOG0321|consen 135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS 214 (720)
T ss_pred ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc
Confidence 776 889999999999999999999999999999999986321 000 00001
Q ss_pred CceeE---EEEcCCCCEEEEecC-CCcEEEEECCCCceeeee--------ccc--ccccEEEEEEcCCCCEEEEEecCCc
Q 010470 352 SNCNA---LAFSMDGQTIFSGHI-DGNLRLWDIQTGKLLSEV--------AAH--SLAAVTSISLSRSGNIILTSGRDNL 417 (510)
Q Consensus 352 ~~i~~---i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~--------~~~--~~~~i~~i~~~~~~~~l~~~~~d~~ 417 (510)
..+.+ +.+..|...|++++. |+.|+|||++........ ..+ ....+.++..+..|.+|++.+.|+.
T Consensus 215 ~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s 294 (720)
T KOG0321|consen 215 NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS 294 (720)
T ss_pred CceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc
Confidence 11222 444458888998776 999999999876433221 111 1246888899999999999999999
Q ss_pred EEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc-eeecccccCcCEEEEEEeCCCC-
Q 010470 418 HNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD-IVRTLKEHTAPVLSCSWSGLGK- 495 (510)
Q Consensus 418 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~- 495 (510)
|++|++.+....-.....+.........-..+|++.++++|+.|+..++|.+.+.+ ....+.+|.-.|++++|.|...
T Consensus 295 Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t 374 (720)
T KOG0321|consen 295 IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATT 374 (720)
T ss_pred EEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCC
Confidence 99999986443322222222222333345689999999999999999999998854 4667788999999999988643
Q ss_pred cEEEeeCCCeEEEcC
Q 010470 496 PLASADKNGVVCVWT 510 (510)
Q Consensus 496 ~l~s~~~dg~i~iwd 510 (510)
-+++|+.|..+++|+
T Consensus 375 ~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 375 PVATCSDDFRVKIWR 389 (720)
T ss_pred CceeeccCcceEEEe
Confidence 588889999999995
No 115
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.6e-26 Score=193.57 Aligned_cols=239 Identities=18% Similarity=0.272 Sum_probs=192.6
Q ss_pred ccccceeEEEEec-CCCEEEEEeCCCeEEEEEcCC-CCee-EeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 010470 265 GCLGSVLDLAITH-DNRSVIAASSSNNLYVWDVNS-GRVR-HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK 341 (510)
Q Consensus 265 ~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~-~~~~-~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~ 341 (510)
.....|.+++||| ...++++++.||+|++|++.. |... .....|.++|.+++|+. ++..+++|+.|+.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc-CCceEEeeccCCceEEEEccC
Confidence 4567899999999 455566888999999999986 3433 34457999999999998 889999999999999999999
Q ss_pred CeEeeeeeecCceeEEEEcCCCC--EEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEE
Q 010470 342 GYCVNTIIFHSNCNALAFSMDGQ--TIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHN 419 (510)
Q Consensus 342 ~~~~~~~~~~~~i~~i~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~ 419 (510)
++....-.+..++.++.|-+... .|++|+.|.+|++||++...++..+..+ ..+.++.. -...++++..+..|.
T Consensus 104 ~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP--eRvYa~Dv--~~pm~vVata~r~i~ 179 (347)
T KOG0647|consen 104 GQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP--ERVYAADV--LYPMAVVATAERHIA 179 (347)
T ss_pred CCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc--ceeeehhc--cCceeEEEecCCcEE
Confidence 97666666667899999977555 8999999999999999999999988877 56666655 356788899999999
Q ss_pred EEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcce--eecccccC---------cCEEEE
Q 010470 420 LFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADI--VRTLKEHT---------APVLSC 488 (510)
Q Consensus 420 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~---------~~v~~~ 488 (510)
+|+++++... +.....+......++++.+|....+.|+-+|.+.|..++.+.+ -.+++.|. .+|+++
T Consensus 180 vynL~n~~te--~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi 257 (347)
T KOG0647|consen 180 VYNLENPPTE--FKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSI 257 (347)
T ss_pred EEEcCCCcch--hhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecce
Confidence 9999865432 2233333444456688888888889999999999999988633 33445554 257899
Q ss_pred EEeCCCCcEEEeeCCCeEEEcC
Q 010470 489 SWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 489 ~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+|+|.-..|+|+|.||.+.+||
T Consensus 258 ~FhP~hgtlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 258 AFHPVHGTLVTAGSDGTFSFWD 279 (347)
T ss_pred EeecccceEEEecCCceEEEec
Confidence 9999989999999999999998
No 116
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2e-27 Score=200.17 Aligned_cols=254 Identities=20% Similarity=0.374 Sum_probs=207.8
Q ss_pred ccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeC------CC------------------------------C-
Q 010470 215 STCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDT------NT------------------------------G- 257 (510)
Q Consensus 215 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~------~~------------------------------~- 257 (510)
..|..++.||.|.|+|+.|++.+.++++++.|++-.||.. .. +
T Consensus 180 g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ 259 (481)
T KOG0300|consen 180 GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH 259 (481)
T ss_pred ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc
Confidence 5689999999999999999999999999999999999972 11 0
Q ss_pred ---cceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcE
Q 010470 258 ---SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTL 334 (510)
Q Consensus 258 ---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i 334 (510)
.++..+.+|.+.|.++.|...|+.+++++.|.+..+||++++.++..+.+|....+.++-+| ...++++++.|.+.
T Consensus 260 tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTF 338 (481)
T KOG0300|consen 260 TIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTF 338 (481)
T ss_pred eeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCcee
Confidence 12345678999999999999999999999999999999999999999999999999999999 88999999999999
Q ss_pred EEEECCCC-eEeeeeeecC-ceeEEEEcCCCCEEEEecCCCcEEEEECCCCc-eeeeecccccccEEEEEEcCCCCEEEE
Q 010470 335 KVWDLHKG-YCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK-LLSEVAAHSLAAVTSISLSRSGNIILT 411 (510)
Q Consensus 335 ~iwd~~~~-~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~ 411 (510)
++||++.. ..+..|.+|. .++++.|..+ ..+++|+.|.+|++||+++.. ++.++... ++++.++++..+.+|+.
T Consensus 339 RLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRtd--S~~NRvavs~g~~iIAi 415 (481)
T KOG0300|consen 339 RLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRTD--SPANRVAVSKGHPIIAI 415 (481)
T ss_pred EeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeeecC--CccceeEeecCCceEEe
Confidence 99999843 3455566664 4999999854 568899999999999999864 55666655 78999999998999999
Q ss_pred EecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCC--CEEEEEcCCCeEEEEeCCCc
Q 010470 412 SGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE--SYVAAGSADGSVYIWSISKA 472 (510)
Q Consensus 412 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~ 472 (510)
-..+..|++||+.........+.........+++++|..+- .-|++++.|..+.-|++...
T Consensus 416 PhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 416 PHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 99999999999986655433322223333345567786543 34778888999999998653
No 117
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=4.3e-27 Score=197.54 Aligned_cols=279 Identities=22% Similarity=0.303 Sum_probs=220.9
Q ss_pred hHHhhhhcCCceEEeccccc--------ccccccCC-CccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC
Q 010470 186 LEKLAKQQVDGVVRRSEEGA--------EFFAESTV-PSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT 256 (510)
Q Consensus 186 ~~~~~~~~~d~~~~~~~~~~--------~~~~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 256 (510)
-..+++|+.|..+++.+... +....... ....+++|-.|..+|+++.|+|....|++|+.|++|++||+..
T Consensus 124 G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK 203 (430)
T KOG0640|consen 124 GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSK 203 (430)
T ss_pred CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEeccc
Confidence 35577888888888776331 01111111 1246788999999999999999999999999999999999975
Q ss_pred Ccceec--ccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee---cCCCCceEEEEEecCCCCEEEEEeCC
Q 010470 257 GSLSST--LYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL---TGHTDKVCAVDVSKISSRHVVSAAYD 331 (510)
Q Consensus 257 ~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~i~~~~~~~~~l~s~~~d 331 (510)
....+. ......+|.++.|+|.|.+|++|.....+++||+++-++...- ..|.+.|+++.+++ .+++.++++.|
T Consensus 204 ~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkD 282 (430)
T KOG0640|consen 204 TSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKD 282 (430)
T ss_pred HHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccC
Confidence 433222 2244678999999999999999999999999999998765443 46899999999999 89999999999
Q ss_pred CcEEEEECCCCeEeeeeeec---CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccc----cEEEEEEcC
Q 010470 332 RTLKVWDLHKGYCVNTIIFH---SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLA----AVTSISLSR 404 (510)
Q Consensus 332 g~i~iwd~~~~~~~~~~~~~---~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----~i~~i~~~~ 404 (510)
|.|++||--+++|+.++... +.|.+..|..+|+++++.+.|..+++|.+.+++++..+.+.... .-+...|+.
T Consensus 283 G~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNh 362 (430)
T KOG0640|consen 283 GAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNH 362 (430)
T ss_pred CcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcC
Confidence 99999999999999988643 45899999999999999999999999999999999988765311 123455777
Q ss_pred CCCEEEEEe-cCCcEEEEEcCCceeeeEee-cCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470 405 SGNIILTSG-RDNLHNLFDIRSLEVCGSLR-ATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI 469 (510)
Q Consensus 405 ~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~ 469 (510)
...|++.-. ..+.+.-||.++......+. +|.+.+. .+.-||.+.-+++|+.|..+++|--
T Consensus 363 tEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R----~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 363 TEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVR----WIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred ccceEEccccccCceeeccccchhhhhhcccCCCCCce----EEEeCCCCCceeeecccceeeeeee
Confidence 777766544 44678899999877665554 3444443 3778999999999999999999963
No 118
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=6.3e-26 Score=214.24 Aligned_cols=309 Identities=14% Similarity=0.240 Sum_probs=247.4
Q ss_pred hhcCCceEEecccccccccccCCC-ccceeeccccccceEEEEEecC--CCEEEEeeCCCeEEEEeCCCCcceecccccc
Q 010470 191 KQQVDGVVRRSEEGAEFFAESTVP-STCKHKINAHEGGCASILFEYN--SARLISGGQDKSIKLWDTNTGSLSSTLYGCL 267 (510)
Q Consensus 191 ~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 267 (510)
....++.+.+|..... ..| .....-++.-.+.|+++. +|. =+.++.|+.+|.+++|++.+++.+.++.++.
T Consensus 129 a~d~~~~l~vw~~s~~-----~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~ 202 (910)
T KOG1539|consen 129 AVDISNILFVWKTSSI-----QEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFF 202 (910)
T ss_pred EEEccCcEEEEEeccc-----cccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccc
Confidence 3445666777764442 011 111112222233377764 453 3468999999999999999999999999999
Q ss_pred cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE---
Q 010470 268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC--- 344 (510)
Q Consensus 268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--- 344 (510)
..|+++.=+|-=..++.|..+|+|.++++..++.+.+|+...++|++++|..++...+++|+..|.+.+||++..+.
T Consensus 203 s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v 282 (910)
T KOG1539|consen 203 SRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINV 282 (910)
T ss_pred cceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeee
Confidence 99999999999999999999999999999999999999955699999999986667788888889999998643210
Q ss_pred --------------------------------------------------------------------------------
Q 010470 345 -------------------------------------------------------------------------------- 344 (510)
Q Consensus 345 -------------------------------------------------------------------------------- 344 (510)
T Consensus 283 ~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~f 362 (910)
T KOG1539|consen 283 TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSF 362 (910)
T ss_pred eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhh
Confidence
Q ss_pred -------------------------------------------------------------ee------------eeeec
Q 010470 345 -------------------------------------------------------------VN------------TIIFH 351 (510)
Q Consensus 345 -------------------------------------------------------------~~------------~~~~~ 351 (510)
.. .+...
T Consensus 363 s~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~ 442 (910)
T KOG1539|consen 363 SVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPK 442 (910)
T ss_pred hhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCc
Confidence 00 00000
Q ss_pred ------CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeec--ccccccEEEEEEcCCCCEEEEEecCCcEEEEEc
Q 010470 352 ------SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVA--AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDI 423 (510)
Q Consensus 352 ------~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~ 423 (510)
..+++++.++.|++.+.|+..|.|.+|++.+|-....+. ..+.++|++++.+.-++.+++++.+|.+.+||.
T Consensus 443 ~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f 522 (910)
T KOG1539|consen 443 RFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDF 522 (910)
T ss_pred cccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEec
Confidence 125677788889999999999999999999998888873 233489999999999999999999999999999
Q ss_pred CCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCC
Q 010470 424 RSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKN 503 (510)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 503 (510)
.+......+..... +..+..+.....++.+..|-.|.++|+.+.+.++.+.+|.+.|++++|||||++|++++.|
T Consensus 523 ~~k~l~~~l~l~~~-----~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD 597 (910)
T KOG1539|consen 523 KKKVLKKSLRLGSS-----ITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMD 597 (910)
T ss_pred CCcceeeeeccCCC-----cceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecC
Confidence 98887666654332 3336677788889999999999999999999999999999999999999999999999999
Q ss_pred CeEEEcC
Q 010470 504 GVVCVWT 510 (510)
Q Consensus 504 g~i~iwd 510 (510)
++|++||
T Consensus 598 ~tIr~wD 604 (910)
T KOG1539|consen 598 STIRTWD 604 (910)
T ss_pred CcEEEEe
Confidence 9999998
No 119
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.5e-26 Score=214.21 Aligned_cols=259 Identities=26% Similarity=0.428 Sum_probs=217.6
Q ss_pred HhhhhcCCceEEecccccccccccCCCccceeeccccccceEE-EEEec-CCCEEEEeeCCCeEEEEeCCCCcceecccc
Q 010470 188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCAS-ILFEY-NSARLISGGQDKSIKLWDTNTGSLSSTLYG 265 (510)
Q Consensus 188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 265 (510)
.++.++.||.+++|......+ ...+.+.+|.+.|.+ ++|-+ ++..+++|+.|++|.+|.+.+..+..++.+
T Consensus 27 ~i~s~sRd~t~~vw~~~~~~~-------l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~Lkg 99 (745)
T KOG0301|consen 27 CIISGSRDGTVKVWAKKGKQY-------LETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKG 99 (745)
T ss_pred EEeecCCCCceeeeeccCccc-------ccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhc
Confidence 356778899999998644222 234567889998888 88885 556799999999999999999999999999
Q ss_pred cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEe
Q 010470 266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV 345 (510)
Q Consensus 266 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 345 (510)
|...|.++....++. +++||.|.++++|-. +++...+.+|...|+++...| .+ .++|||.|.+|++|.- ++.+
T Consensus 100 H~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~-e~-~~vTgsaDKtIklWk~--~~~l 172 (745)
T KOG0301|consen 100 HKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLP-EN-TYVTGSADKTIKLWKG--GTLL 172 (745)
T ss_pred cccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecC-CC-cEEeccCcceeeeccC--Cchh
Confidence 999999999888887 999999999999965 567777999999999999988 44 8999999999999975 8889
Q ss_pred eeeeecCc-eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC
Q 010470 346 NTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR 424 (510)
Q Consensus 346 ~~~~~~~~-i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 424 (510)
+++.+|.. |..+++-+++ .|++++.||.|+.|++ +|..+....+|. .-+.++...+++..+++++.|++++||+..
T Consensus 173 ~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ght-n~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 173 KTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHT-NFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred hhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccc-eEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 99998865 8999998654 5788999999999998 888999998888 899999999999999999999999999987
Q ss_pred CceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470 425 SLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS 470 (510)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 470 (510)
.+.+.+..+...+. ++++-++|. |++|++||.|+||...
T Consensus 250 --e~~q~I~lPttsiW----sa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 250 --ECVQVITLPTTSIW----SAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred --ceEEEEecCccceE----EEEEeeCCC-EEEeccCceEEEEEec
Confidence 56666655543332 255666676 5567779999999876
No 120
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.9e-26 Score=204.23 Aligned_cols=256 Identities=22% Similarity=0.365 Sum_probs=207.5
Q ss_pred CeEEEEeCCCCcceeccccc-ccceeEEEEecCCCEEEEEe-CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCE
Q 010470 247 KSIKLWDTNTGSLSSTLYGC-LGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRH 324 (510)
Q Consensus 247 g~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 324 (510)
.++.+||+.+|....++.+. ...-.++..- ++.+++++. ....+.+|.+..........--.++|.++.-+| .+.+
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n-~G~~ 95 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSN-LGYF 95 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCC-CceE
Confidence 45999999999988887765 2222222222 346677665 445899999876554443344568899999998 8888
Q ss_pred EEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcCCCCEEEEecCCCcEEEEECC---------CCceeeeeccccc
Q 010470 325 VVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQ---------TGKLLSEVAAHSL 394 (510)
Q Consensus 325 l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~---------~~~~~~~~~~~~~ 394 (510)
++.|+..|.|++|.+.+|..+..+..|. +|+|+.|+.||.+|++|+.||.|.+|++. +.++...+..|.
T Consensus 96 l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht- 174 (476)
T KOG0646|consen 96 LLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHT- 174 (476)
T ss_pred EEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCc-
Confidence 8888899999999999999999887774 59999999999999999999999999863 346677777777
Q ss_pred ccEEEEEEcCC--CCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc
Q 010470 395 AAVTSISLSRS--GNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA 472 (510)
Q Consensus 395 ~~i~~i~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 472 (510)
-+|+++...+. ..++++++.|.++++||+..+..+.++..+.. +.+++++|.+..+++|+.+|.|.+.++...
T Consensus 175 lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~s-----i~av~lDpae~~~yiGt~~G~I~~~~~~~~ 249 (476)
T KOG0646|consen 175 LSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSS-----IKAVALDPAERVVYIGTEEGKIFQNLLFKL 249 (476)
T ss_pred ceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCc-----ceeEEEcccccEEEecCCcceEEeeehhcC
Confidence 89999988775 45899999999999999999988887765433 344899999999999999999999887542
Q ss_pred ----------------ceeecccccCc--CEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 473 ----------------DIVRTLKEHTA--PVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 473 ----------------~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
..+..+.+|.+ +|+|++.+-||..|++|+.||.|+|||
T Consensus 250 ~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 250 SGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred CcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 23455678888 999999999999999999999999997
No 121
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.7e-27 Score=190.89 Aligned_cols=248 Identities=17% Similarity=0.261 Sum_probs=195.5
Q ss_pred ccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCC---cceecccccccceeEEEEec--CCCEEEEEeCCCeEEEEE
Q 010470 221 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG---SLSSTLYGCLGSVLDLAITH--DNRSVIAASSSNNLYVWD 295 (510)
Q Consensus 221 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd 295 (510)
-..|...|..+..+..|++|+|+++|++|+|+.+.++ +.+.++.+|.++|+.++|.. .|.+|+++++||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 3579999999999999999999999999999998654 45788999999999999976 799999999999999999
Q ss_pred cCCCC--eeEeecCCCCceEEEEEecCC-CCEEEEEeCCCcEEEEECCCC--eEeeee--eecCceeEEEEcCC---C--
Q 010470 296 VNSGR--VRHTLTGHTDKVCAVDVSKIS-SRHVVSAAYDRTLKVWDLHKG--YCVNTI--IFHSNCNALAFSMD---G-- 363 (510)
Q Consensus 296 ~~~~~--~~~~~~~~~~~v~~i~~~~~~-~~~l~s~~~dg~i~iwd~~~~--~~~~~~--~~~~~i~~i~~~~~---~-- 363 (510)
-.+++ .......|...|++++|.|.+ +-.|++++.||.|.|++.++. .....+ .+.-.+++++|.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 87775 345567899999999999953 456889999999999998754 222222 22345899999985 4
Q ss_pred ---------CEEEEecCCCcEEEEECCCCc--eeeeecccccccEEEEEEcCCC----CEEEEEecCCcEEEEEcCCcee
Q 010470 364 ---------QTIFSGHIDGNLRLWDIQTGK--LLSEVAAHSLAAVTSISLSRSG----NIILTSGRDNLHNLFDIRSLEV 428 (510)
Q Consensus 364 ---------~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~i~~i~~~~~~----~~l~~~~~d~~i~i~d~~~~~~ 428 (510)
+.|++|+.|..|+||+..++. .-..+..|. ..|+.++|.|.- .+|++++.||++.||..+....
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~-dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e 245 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHK-DWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE 245 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcc-hhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC
Confidence 569999999999999998763 233466666 899999999964 4799999999999998763211
Q ss_pred eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470 429 CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS 470 (510)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 470 (510)
...... -......+.++.||+.|++|++++.|+.|.+|.-.
T Consensus 246 ~wk~tl-l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 246 PWKKTL-LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cccccc-cccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 111100 11122334568999999999999999999999743
No 122
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=4.3e-27 Score=209.75 Aligned_cols=238 Identities=22% Similarity=0.379 Sum_probs=206.2
Q ss_pred cccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc--eecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe
Q 010470 224 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL--SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV 301 (510)
Q Consensus 224 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 301 (510)
..+.|.++.+.|||+.|++|+.-.++.|||+..... ...+....-.+++++.+||.+..++++.||.|.|||+.+...
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL 543 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee
Confidence 345799999999999999999999999999975443 334444456778899999999999999999999999999999
Q ss_pred eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECC
Q 010470 302 RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQ 381 (510)
Q Consensus 302 ~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~ 381 (510)
++.|.+|.+.+.||.+++ ++..|.+|+-|++|+.||++.++.+....+.+.|.++.++|++.++++|-.++.+.+....
T Consensus 544 VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred eecccCCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecC
Confidence 999999999999999998 8999999999999999999999999998899999999999999999999999999998864
Q ss_pred CCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC
Q 010470 382 TGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD 461 (510)
Q Consensus 382 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 461 (510)
.. ....+..|. +.|.++.|.+.|+++++.+.|+.+..|...-+..+....... .+.++.+|.|.+||++|+.|
T Consensus 623 kp-~kyqlhlhe-ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~S-----sVlsCDIS~ddkyIVTGSGd 695 (705)
T KOG0639|consen 623 KP-EKYQLHLHE-SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS-----SVLSCDISFDDKYIVTGSGD 695 (705)
T ss_pred Cc-cceeecccc-cEEEEEEecccCceeeecCchhhhhhccCccccceeeccccC-----cceeeeeccCceEEEecCCC
Confidence 33 334444554 899999999999999999999999999988777665554333 33447889999999999999
Q ss_pred CeEEEEeC
Q 010470 462 GSVYIWSI 469 (510)
Q Consensus 462 g~i~iwd~ 469 (510)
....||.+
T Consensus 696 kkATVYeV 703 (705)
T KOG0639|consen 696 KKATVYEV 703 (705)
T ss_pred cceEEEEE
Confidence 88888865
No 123
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=7.9e-25 Score=195.55 Aligned_cols=277 Identities=18% Similarity=0.288 Sum_probs=215.5
Q ss_pred ccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceec---cccc-ccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470 221 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSST---LYGC-LGSVLDLAITHDNRSVIAASSSNNLYVWDV 296 (510)
Q Consensus 221 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 296 (510)
.+.-+..|....|+|.+..++.....|.+.+|++..+..... +..+ ...|.|++|.++|. +++|.++|.|.||+.
T Consensus 196 vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~ 274 (626)
T KOG2106|consen 196 VKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSK 274 (626)
T ss_pred ceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeC
Confidence 344566788999999776665555678999999988766443 3322 36799999999987 889999999999999
Q ss_pred CCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe-----------Eee-------------------
Q 010470 297 NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY-----------CVN------------------- 346 (510)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~------------------- 346 (510)
.+.+..+....|.+.|.+++... +..|++|+.|+.|..||-.-.+ .++
T Consensus 275 ~~~~~~k~~~aH~ggv~~L~~lr--~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL 352 (626)
T KOG2106|consen 275 GTNRISKQVHAHDGGVFSLCMLR--DGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFIL 352 (626)
T ss_pred CCceEEeEeeecCCceEEEEEec--CccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEE
Confidence 88887777779999999999876 4456779999999999832110 000
Q ss_pred -----------eeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC
Q 010470 347 -----------TIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD 415 (510)
Q Consensus 347 -----------~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 415 (510)
.+.+......++.+|+.+.+++++.|+.+++|+ ..++....... .+..|+.|+|.| .++.|+..
T Consensus 353 ~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~--d~~~~~~fhpsg-~va~Gt~~ 427 (626)
T KOG2106|consen 353 QGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE--DPAECADFHPSG-VVAVGTAT 427 (626)
T ss_pred EeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEec--CceeEeeccCcc-eEEEeecc
Confidence 011112356788899999999999999999999 55555554444 789999999999 99999999
Q ss_pred CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc-eeecc-cccCcCEEEEEEeCC
Q 010470 416 NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD-IVRTL-KEHTAPVLSCSWSGL 493 (510)
Q Consensus 416 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~-~~~~~~v~~~~~~~~ 493 (510)
|...+.|..+...+..-.. +. +++.+.|+|+|.+||.|+.|+.|+||.+..+. ..... +.|..+|+.+.||+|
T Consensus 428 G~w~V~d~e~~~lv~~~~d-~~----~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~D 502 (626)
T KOG2106|consen 428 GRWFVLDTETQDLVTIHTD-NE----QLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSD 502 (626)
T ss_pred ceEEEEecccceeEEEEec-CC----ceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCC
Confidence 9999999998555443332 33 44559999999999999999999999987643 33333 224589999999999
Q ss_pred CCcEEEeeCCCeEEEcC
Q 010470 494 GKPLASADKNGVVCVWT 510 (510)
Q Consensus 494 ~~~l~s~~~dg~i~iwd 510 (510)
+++|.+-+.|-.|..|.
T Consensus 503 s~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 503 SQFLVSNSGDYEILYWK 519 (626)
T ss_pred CceEEeccCceEEEEEc
Confidence 99999999999998883
No 124
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.5e-27 Score=219.14 Aligned_cols=277 Identities=22% Similarity=0.351 Sum_probs=215.8
Q ss_pred cceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc----eecccc---cccceeEEEEec-CCCEEEEEeCCCeEEEEEcC
Q 010470 226 GGCASILFEYNSARLISGGQDKSIKLWDTNTGSL----SSTLYG---CLGSVLDLAITH-DNRSVIAASSSNNLYVWDVN 297 (510)
Q Consensus 226 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~---~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~ 297 (510)
+...+|..+++-..++.++.. .++||.++.... ...+.+ -.-.+..+.|.. +.++|++++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 346677777888888888754 678887654322 111111 122345667753 46789999999999999998
Q ss_pred C---CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcC-CCCEEEEecCC
Q 010470 298 S---GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSM-DGQTIFSGHID 372 (510)
Q Consensus 298 ~---~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~-~~~~l~~~~~d 372 (510)
. .+.+..|..|...++++.|++...++|++||.||+|++||++......++...+ .|..+.|+| .+..|+++...
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ds 198 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDS 198 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCC
Confidence 7 566778899999999999999999999999999999999999988888887765 499999999 67899999999
Q ss_pred CcEEEEECCCCc-eeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCC
Q 010470 373 GNLRLWDIQTGK-LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD 451 (510)
Q Consensus 373 g~i~i~d~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 451 (510)
|.+.+||+|... +...+..|. ++|.++.|+|++.+|++|++|+.|+|||..+.+.......+ ...++.++.|-|.
T Consensus 199 G~lqlWDlRqp~r~~~k~~AH~-GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn---Tiapv~rVkWRP~ 274 (839)
T KOG0269|consen 199 GYLQLWDLRQPDRCEKKLTAHN-GPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN---TIAPVGRVKWRPA 274 (839)
T ss_pred ceEEEeeccCchhHHHHhhccc-CceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe---ecceeeeeeeccC
Confidence 999999999765 455566665 99999999999999999999999999999865432222211 2234556899997
Q ss_pred CCE-EEEEcC--CCeEEEEeCCCc-ceeecccccCcCEEEEEEeC-CCCcEEEeeCCCeEE
Q 010470 452 ESY-VAAGSA--DGSVYIWSISKA-DIVRTLKEHTAPVLSCSWSG-LGKPLASADKNGVVC 507 (510)
Q Consensus 452 ~~~-l~~~~~--dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~ 507 (510)
..+ |++++. |-.|+|||+... -+..++..|...++.++|.. |...|.+|+.||.|.
T Consensus 275 ~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 275 RSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred ccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 765 555553 778999999765 45677888999999999965 344788999999864
No 125
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=1.4e-26 Score=207.16 Aligned_cols=274 Identities=18% Similarity=0.276 Sum_probs=207.5
Q ss_pred HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcce------
Q 010470 187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLS------ 260 (510)
Q Consensus 187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~------ 260 (510)
..+++|+.|-.++.|+... ....++. .......-...|.++.|++.|..|++.+.....+|+|.......
T Consensus 180 aR~~sGs~Dy~v~~wDf~g---Mdas~~~-fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGD 255 (641)
T KOG0772|consen 180 ARFVSGSLDYTVKFWDFQG---MDASMRS-FRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGD 255 (641)
T ss_pred ceeeeccccceEEEEeccc---ccccchh-hhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccc
Confidence 4678889999999998543 1111111 11122233447999999999999998888899999998754332
Q ss_pred ------ecccccccceeEEEEecCCC-EEEEEeCCCeEEEEEcCCCC-eeEeec-----CCCCceEEEEEecCCCCEEEE
Q 010470 261 ------STLYGCLGSVLDLAITHDNR-SVIAASSSNNLYVWDVNSGR-VRHTLT-----GHTDKVCAVDVSKISSRHVVS 327 (510)
Q Consensus 261 ------~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~-~~~~~~-----~~~~~v~~i~~~~~~~~~l~s 327 (510)
....||...++|.+|+|+.+ .+++++.||+++|||++..+ ....++ +..-+++.++|++ ++..|++
T Consensus 256 QYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAa 334 (641)
T KOG0772|consen 256 QYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAA 334 (641)
T ss_pred hhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-Ccchhhh
Confidence 22358999999999999865 68899999999999998654 233332 2345688999999 8889999
Q ss_pred EeCCCcEEEEECCCCeEeeee---ee---cCceeEEEEcCCCCEEEEecCCCcEEEEECCCCc-eeeeecc-cccccEEE
Q 010470 328 AAYDRTLKVWDLHKGYCVNTI---IF---HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK-LLSEVAA-HSLAAVTS 399 (510)
Q Consensus 328 ~~~dg~i~iwd~~~~~~~~~~---~~---~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~-~~~~~i~~ 399 (510)
|+.||+|.+|+..+...-..+ .. ...|+|+.|+++|++|++-+.|+++++||++..+ ++....+ ....+-+.
T Consensus 335 gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~td 414 (641)
T KOG0772|consen 335 GCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTD 414 (641)
T ss_pred cccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCc
Confidence 999999999998543221111 11 2369999999999999999999999999999764 3333322 22256778
Q ss_pred EEEcCCCCEEEEEe------cCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470 400 ISLSRSGNIILTSG------RDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI 469 (510)
Q Consensus 400 i~~~~~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~ 469 (510)
++|||+.++|++|. ..|.+.+||..+...+..+......+. .+.|+|.-+.|++|+.||.++||--
T Consensus 415 c~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv----~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 415 CCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVV----RCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred cccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEE----EEeecchhhheeeecCCCceEEEEC
Confidence 99999999999986 346899999999999888877654443 4889999999999999999999853
No 126
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=7.5e-26 Score=190.31 Aligned_cols=236 Identities=16% Similarity=0.293 Sum_probs=194.8
Q ss_pred cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEe
Q 010470 266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV 345 (510)
Q Consensus 266 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 345 (510)
....|+++.|+|.++.|++++.||.+++||+........+. |..++.+.+|.+ ...+++|+.||.|+.+|+.++...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC--CceEEEeccCceEEEEEecCCcce
Confidence 46789999999999999999999999999999887666666 899999999976 678999999999999999998877
Q ss_pred eeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC
Q 010470 346 NTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS 425 (510)
Q Consensus 346 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~ 425 (510)
..-.+...+.|+.+++....+++|+.|++|++||.+.......+... ..|.++.. .|+.|++|+.+..+.+||+++
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~--kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG--KKVYCMDV--SGNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC--ceEEEEec--cCCEEEEeecCceEEEEEccc
Confidence 77677788999999998899999999999999999986555555544 47777765 578999999999999999998
Q ss_pred ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc----ceeecccccC---------cCEEEEEEeC
Q 010470 426 LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA----DIVRTLKEHT---------APVLSCSWSG 492 (510)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~---------~~v~~~~~~~ 492 (510)
......... ........++++-|++.-+++++-||+|.+=.++.. +....|+.|. -||++++|+|
T Consensus 165 ~~~~~q~re--S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp 242 (323)
T KOG1036|consen 165 LDEPFQRRE--SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP 242 (323)
T ss_pred ccchhhhcc--ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence 765443222 222233456888898888999999999988776655 3334455553 3799999999
Q ss_pred CCCcEEEeeCCCeEEEcC
Q 010470 493 LGKPLASADKNGVVCVWT 510 (510)
Q Consensus 493 ~~~~l~s~~~dg~i~iwd 510 (510)
--..|+|||.||.|.+||
T Consensus 243 ~~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 243 IHGTFATGGSDGIVNIWD 260 (323)
T ss_pred ccceEEecCCCceEEEcc
Confidence 988999999999999997
No 127
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=2.8e-26 Score=202.74 Aligned_cols=244 Identities=19% Similarity=0.323 Sum_probs=194.0
Q ss_pred cccccceEEEEEecCC-CEEEEeeCCCeEEEEeCCCCc----------ceecccccccceeEEEEecCC-CEEEEEeCCC
Q 010470 222 NAHEGGCASILFEYNS-ARLISGGQDKSIKLWDTNTGS----------LSSTLYGCLGSVLDLAITHDN-RSVIAASSSN 289 (510)
Q Consensus 222 ~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~----------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~ 289 (510)
-.|.|.|+.+.+-|.. ..+++++..+.|.|||..... +-..+.+|...-++++|++.. ..+++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 4699999999999954 567788889999999985421 122677898878889998864 4688999999
Q ss_pred eEEEEEcCCCC-------eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC--CeEeeeeeec-CceeEEEE
Q 010470 290 NLYVWDVNSGR-------VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK--GYCVNTIIFH-SNCNALAF 359 (510)
Q Consensus 290 ~i~iwd~~~~~-------~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~-~~i~~i~~ 359 (510)
.|++||+.... +...+.+|...|..++|++.....|.+++.|+.+.|||+++ .++......+ ..++|++|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 99999997532 45678899999999999999999999999999999999994 4444555554 56999999
Q ss_pred cC-CCCEEEEecCCCcEEEEECCCC-ceeeeecccccccEEEEEEcCCC-CEEEEEecCCcEEEEEcCCceee-------
Q 010470 360 SM-DGQTIFSGHIDGNLRLWDIQTG-KLLSEVAAHSLAAVTSISLSRSG-NIILTSGRDNLHNLFDIRSLEVC------- 429 (510)
Q Consensus 360 ~~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~------- 429 (510)
+| ++..|++|+.|++|.+||+|+. +++..+..|. ..|..+.|+|.. ..|++++.|+.+.+||+..-...
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~-dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~ 359 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHE-DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAE 359 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcccCceeccCCC-cceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhc
Confidence 99 6677889999999999999986 4566777776 899999999964 57888999999999999742221
Q ss_pred -------eEeecCCCeeecCceeEEEcCCCCE-EEEEcCCCeEEEEeCC
Q 010470 430 -------GSLRATGNRVASNWSRSCISPDESY-VAAGSADGSVYIWSIS 470 (510)
Q Consensus 430 -------~~~~~~~~~~~~~~~~~~~s~~~~~-l~~~~~dg~i~iwd~~ 470 (510)
..-.+|.. .++.+.|+|+..+ |++.+.|+.+.||.+.
T Consensus 360 dgppEllF~HgGH~~----kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 360 DGPPELLFIHGGHTA----KVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cCCcceeEEecCccc----ccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 22223333 3445889998776 6778899999999975
No 128
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.95 E-value=4.8e-26 Score=201.00 Aligned_cols=291 Identities=17% Similarity=0.237 Sum_probs=217.6
Q ss_pred eeeccccccceEEEEEecCC--CEEEEeeCCCeEEEEeCCCCc----ceecccccccceeEEEEecCC-CEEEEEeCCCe
Q 010470 218 KHKINAHEGGCASILFEYNS--ARLISGGQDKSIKLWDTNTGS----LSSTLYGCLGSVLDLAITHDN-RSVIAASSSNN 290 (510)
Q Consensus 218 ~~~~~~h~~~v~~~~~s~~~--~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~ 290 (510)
....+-|.+.|++++|+|.. +++++|..-|.|-+||+.+.. -+..+..|.++|.++.|+|.+ ..+++.++||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 34567789999999999964 478999999999999995322 245577899999999999965 57899999999
Q ss_pred EEEEEcCCCCeeEeec--CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE-eeeeeec-CceeEEEEcCC-CCE
Q 010470 291 LYVWDVNSGRVRHTLT--GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC-VNTIIFH-SNCNALAFSMD-GQT 365 (510)
Q Consensus 291 i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~-~~i~~i~~~~~-~~~ 365 (510)
|++-|++.+.....+. .....+.++.|+. +...++.+..=|.+.+||++++.. ...+..+ ..|++++++|. ..+
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~ 337 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF 337 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence 9999998765433333 2445567777877 666677777777999999997654 3333333 46999999995 457
Q ss_pred EEEecCCCcEEEEECCCCce----eeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC----CceeeeEeecCCC
Q 010470 366 IFSGHIDGNLRLWDIQTGKL----LSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR----SLEVCGSLRATGN 437 (510)
Q Consensus 366 l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~~ 437 (510)
|++++.|++.+|||++.... +.....|. ..|.+..|||++..|++.+.|+.|+|||.. ...+...+.....
T Consensus 338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hr-rsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~ 416 (498)
T KOG4328|consen 338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHR-RSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNR 416 (498)
T ss_pred eeecccCcceeeeehhhhcCCCCcceeccccc-ceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCc
Confidence 78999999999999986322 22233343 899999999998889999999999999984 3334344432221
Q ss_pred e-eecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCc-CEEEE-EEeCCCC-cEEEeeCCCeEEEcC
Q 010470 438 R-VASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTA-PVLSC-SWSGLGK-PLASADKNGVVCVWT 510 (510)
Q Consensus 438 ~-~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~-~~~~~~~-~l~s~~~dg~i~iwd 510 (510)
. -........|.|+..+|++|..-..|-|||-..++.+..+..... .|.++ .|+|-+. +++.++..|.|+||.
T Consensus 417 t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 417 TGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred ccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 1 111223367999999999999999999999888887877655433 55554 8999988 445556778999984
No 129
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=3e-26 Score=202.53 Aligned_cols=242 Identities=24% Similarity=0.358 Sum_probs=193.8
Q ss_pred cccccceeEEEEecCCCEEEE-EeCCCeEEEEEcCCCC----------eeEeecCCCCceEEEEEecCCCCEEEEEeCCC
Q 010470 264 YGCLGSVLDLAITHDNRSVIA-ASSSNNLYVWDVNSGR----------VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR 332 (510)
Q Consensus 264 ~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~----------~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg 332 (510)
..|.+.|+.+.+.|.+..|++ .+..+.|+|||..+.. +-..+.+|...-++++|++.....+++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 468889999999998776555 5677899999986422 22367889988889999998889999999999
Q ss_pred cEEEEECCCCeE-------eeeeeec-CceeEEEEcC-CCCEEEEecCCCcEEEEECC--CCceeeeecccccccEEEEE
Q 010470 333 TLKVWDLHKGYC-------VNTIIFH-SNCNALAFSM-DGQTIFSGHIDGNLRLWDIQ--TGKLLSEVAAHSLAAVTSIS 401 (510)
Q Consensus 333 ~i~iwd~~~~~~-------~~~~~~~-~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~i~~i~ 401 (510)
+|++||+..... ...+..+ ..|..++|+| +...|++++.|+.+.|||+| +.++......|. +.+.|++
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~-~~vn~~~ 279 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHS-AEVNCVA 279 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccC-CceeEEE
Confidence 999999974322 2333444 3489999999 56678899999999999999 455555666666 9999999
Q ss_pred EcCC-CCEEEEEecCCcEEEEEcCCc-eeeeEeecCCCeeecCceeEEEcCC-CCEEEEEcCCCeEEEEeCCCc------
Q 010470 402 LSRS-GNIILTSGRDNLHNLFDIRSL-EVCGSLRATGNRVASNWSRSCISPD-ESYVAAGSADGSVYIWSISKA------ 472 (510)
Q Consensus 402 ~~~~-~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~------ 472 (510)
|+|- +.+|++|+.|++|.+||+|+. ..+.++.+|...+.. +.|||+ ...|++++.|+.+.|||+..-
T Consensus 280 fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~----V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ 355 (422)
T KOG0264|consen 280 FNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQ----VEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP 355 (422)
T ss_pred eCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEE----EEeCCCCCceeEecccCCcEEEEeccccccccCh
Confidence 9994 567888999999999999974 456777777777665 999995 567888999999999998652
Q ss_pred --------ceeecccccCcCEEEEEEeCCCCc-EEEeeCCCeEEEcC
Q 010470 473 --------DIVRTLKEHTAPVLSCSWSGLGKP-LASADKNGVVCVWT 510 (510)
Q Consensus 473 --------~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~iwd 510 (510)
+++..-.||...|..++|+|+..+ +++.+.|+.+.||.
T Consensus 356 eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 356 EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred hhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 223445679999999999999885 66889999999994
No 130
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=7.5e-28 Score=223.66 Aligned_cols=254 Identities=24% Similarity=0.423 Sum_probs=225.6
Q ss_pred CEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEE
Q 010470 238 ARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 317 (510)
Q Consensus 238 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 317 (510)
.+++.+..+-.+++||.. .+..|...+.++..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.++.|
T Consensus 5 ~~~m~~~~~t~Lr~~~~~------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f 78 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTR------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTF 78 (825)
T ss_pred cccceeeeeeccccccch------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeec
Confidence 344555556667788754 34567888888888777888999999999999999887788889999999999999
Q ss_pred ecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccccccc
Q 010470 318 SKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA 396 (510)
Q Consensus 318 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 396 (510)
++ ...+|++|+.+|+|++||+..++.++++.++ .++.++.|+|.+.+++.|+.|+.+.+||++...+...+..|. ..
T Consensus 79 ~~-~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~-~v 156 (825)
T KOG0267|consen 79 DT-SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHT-RV 156 (825)
T ss_pred Cc-chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCc-ce
Confidence 98 8889999999999999999999999988877 569999999999999999999999999999888899998865 89
Q ss_pred EEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceee
Q 010470 397 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVR 476 (510)
Q Consensus 397 i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 476 (510)
+.++.|+|+|++++.++.|..++|||+..++....|..|...+.. +.|+|..-+++.|+.|++|++||+.+.+.+.
T Consensus 157 v~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~s----le~hp~e~Lla~Gs~d~tv~f~dletfe~I~ 232 (825)
T KOG0267|consen 157 VDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQS----LEFHPLEVLLAPGSSDRTVRFWDLETFEVIS 232 (825)
T ss_pred eEEEeecCCCceeeccCCcceeeeecccccccccccccccccccc----cccCchhhhhccCCCCceeeeeccceeEEee
Confidence 999999999999999999999999999999999999888777665 7799999999999999999999999999998
Q ss_pred cccccCcCEEEEEEeCCCCcEEEeeCC
Q 010470 477 TLKEHTAPVLSCSWSGLGKPLASADKN 503 (510)
Q Consensus 477 ~~~~~~~~v~~~~~~~~~~~l~s~~~d 503 (510)
........|.+.+|+|++..+.+|...
T Consensus 233 s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 233 SGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ccCCccCCceeeeecCCceeeecCchh
Confidence 888888899999999999988887654
No 131
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.6e-25 Score=213.96 Aligned_cols=243 Identities=19% Similarity=0.311 Sum_probs=206.6
Q ss_pred cccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC-CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 010470 264 YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG-RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG 342 (510)
Q Consensus 264 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~ 342 (510)
..|....+.++|.|+|.+|++++.||.|++|+..+. ..-.++..+...|.+++.. .++|++|+.+++|.+|.+.++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~---s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY---SNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec---ccceEEeeccceEEEeeCCCC
Confidence 468888999999999999999999999999998765 3334444478888888874 469999999999999999887
Q ss_pred eEeeee-eecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEE
Q 010470 343 YCVNTI-IFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLF 421 (510)
Q Consensus 343 ~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~ 421 (510)
..-..+ ...-++++++|+-+|.+++.|+.|-.|++.++.+......+.+|. ++|.++.|+|++.+|++.+.||.|++|
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~-apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD-APVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccC-CceeeeeEcCCCCEEEEEecCceEEEE
Confidence 654333 334568999999999999999999999999999999999999988 999999999999999999999999999
Q ss_pred EcCCceeeeEeecCCCe---e-ecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccc--cCcCEEEEEEeCCCC
Q 010470 422 DIRSLEVCGSLRATGNR---V-ASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE--HTAPVLSCSWSGLGK 495 (510)
Q Consensus 422 d~~~~~~~~~~~~~~~~---~-~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~ 495 (510)
|+.++....++..-... . ....+.++|+|+|..+++.+.|+.|.+|+..+++....+.. +...+..+.|+|+|+
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~ 245 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGK 245 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCc
Confidence 99988777666532221 1 33456789999988888888899999999999988877754 455599999999999
Q ss_pred cEEEeeCCCeEEEcC
Q 010470 496 PLASADKNGVVCVWT 510 (510)
Q Consensus 496 ~l~s~~~dg~i~iwd 510 (510)
|||+++.||.|.|||
T Consensus 246 YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 246 YIAASTLDGQILVWN 260 (933)
T ss_pred EEeeeccCCcEEEEe
Confidence 999999999999997
No 132
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=9.9e-25 Score=201.82 Aligned_cols=276 Identities=16% Similarity=0.250 Sum_probs=230.1
Q ss_pred cccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc-eecccc-cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe
Q 010470 224 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL-SSTLYG-CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV 301 (510)
Q Consensus 224 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 301 (510)
-..+|.+++|+.+.+.||.+-.||.|.||++..+-. ...+.+ ....|.+++|+ ++..|++.+.+|.|.-||+.+++.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCce
Confidence 456899999999999999999999999999987644 333444 45689999999 566699999999999999999999
Q ss_pred eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec---CceeEEEEcCCCCEEEEecCCCcEEEE
Q 010470 302 RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH---SNCNALAFSMDGQTIFSGHIDGNLRLW 378 (510)
Q Consensus 302 ~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~i~~~~~~~~l~~~~~dg~i~i~ 378 (510)
...+....+.|++++.+| .+..++.|+.||.+..++...+......... +.+.++.|+|++..++.|+.||.|++|
T Consensus 103 ~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriw 181 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIW 181 (691)
T ss_pred eEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEE
Confidence 999999999999999999 7889999999998888888887766554433 569999999999999999999999999
Q ss_pred ECCCCceeeeec-------ccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCC
Q 010470 379 DIQTGKLLSEVA-------AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD 451 (510)
Q Consensus 379 d~~~~~~~~~~~-------~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 451 (510)
|..++..+.... .....-|.++.|-. ...|++|...|+|.+||...+..+..+..+...+.+ ++.+++
T Consensus 182 d~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~----Lav~~~ 256 (691)
T KOG2048|consen 182 DVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLA----LAVADN 256 (691)
T ss_pred EcCCCceEEEeeecccccccCCceEEEEEEEee-cCcEEEecCCceEEEEcccCcchhhhhhhhhcceeE----EEEcCC
Confidence 999988766222 11123567777764 467899999999999999999999888888777665 899999
Q ss_pred CCEEEEEcCCCeEEEEeCCCcce----eecccccCcCEEEEEEeCCCCcEEEeeCCCeEEE
Q 010470 452 ESYVAAGSADGSVYIWSISKADI----VRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCV 508 (510)
Q Consensus 452 ~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i 508 (510)
++++++++.|+.|.-|...+++. ......|...|.+++..++ .|++||.|+.+.+
T Consensus 257 ~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 257 EDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred CCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence 99999999999999998776543 2233458888999999877 8999999988865
No 133
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.2e-26 Score=185.36 Aligned_cols=242 Identities=21% Similarity=0.341 Sum_probs=191.6
Q ss_pred cccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC---CeeEeecCCCCceEEEEEe-cCCCCEEEEEeCCCcEEEEEC
Q 010470 264 YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG---RVRHTLTGHTDKVCAVDVS-KISSRHVVSAAYDRTLKVWDL 339 (510)
Q Consensus 264 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~-~~~~~~l~s~~~dg~i~iwd~ 339 (510)
..|...|.++...-.|+.|++++.|++|+|+.++.+ +++.++.+|.++|+.++|. |.-+.+|++++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 467888888888888999999999999999999764 4678899999999999996 446889999999999999999
Q ss_pred CCCeEeeeee---ecCceeEEEEcCC--CCEEEEecCCCcEEEEECCCC--ceeeeecccccccEEEEEEcCC---C---
Q 010470 340 HKGYCVNTII---FHSNCNALAFSMD--GQTIFSGHIDGNLRLWDIQTG--KLLSEVAAHSLAAVTSISLSRS---G--- 406 (510)
Q Consensus 340 ~~~~~~~~~~---~~~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~i~~i~~~~~---~--- 406 (510)
.+++-.+... +...+++++|.|. |-.|++++.||.|.|++.+.. -....+...+.-.|++++|.|. |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 8885433332 2356999999884 668899999999999988754 2333343344488999999986 4
Q ss_pred --------CEEEEEecCCcEEEEEcCCc--eeeeEeecCCCeeecCceeEEEcCCC----CEEEEEcCCCeEEEEeCCCc
Q 010470 407 --------NIILTSGRDNLHNLFDIRSL--EVCGSLRATGNRVASNWSRSCISPDE----SYVAAGSADGSVYIWSISKA 472 (510)
Q Consensus 407 --------~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~----~~l~~~~~dg~i~iwd~~~~ 472 (510)
+.|++|+.|+.|+||+..++ ..-.++..|...+.. ++|.|.- .+|++++.||+|.||.....
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRD----VAwaP~~gl~~s~iAS~SqDg~viIwt~~~e 243 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRD----VAWAPSVGLPKSTIASCSQDGTVIIWTKDEE 243 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhh----hhhccccCCCceeeEEecCCCcEEEEEecCc
Confidence 56999999999999998874 233446666666655 7888853 57999999999999986632
Q ss_pred -ce--eecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 473 -DI--VRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 473 -~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
+. ...+......+..++||+.|+.|+.++.|+.|.+|
T Consensus 244 ~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlw 283 (299)
T KOG1332|consen 244 YEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLW 283 (299)
T ss_pred cCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEE
Confidence 11 12233356789999999999999999999999998
No 134
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=2.3e-27 Score=220.41 Aligned_cols=239 Identities=26% Similarity=0.463 Sum_probs=217.4
Q ss_pred eeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcC
Q 010470 218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVN 297 (510)
Q Consensus 218 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 297 (510)
.+.+..|...|.|+..-..++.+++|+.|..+.+|.+..-..+..+.+|..+|-++.|+++..+|++|+.+|+|++||+.
T Consensus 21 ~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 21 TREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred chhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence 34567899999999987788999999999999999998777778899999999999999999999999999999999999
Q ss_pred CCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc-eeEEEEcCCCCEEEEecCCCcEE
Q 010470 298 SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLR 376 (510)
Q Consensus 298 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~dg~i~ 376 (510)
.++.++++.+|...+.++.|+| -+.++++|+.|+.+++||++..-|...+..+.. +.++.|+|+|+++++|+.|..++
T Consensus 101 eAk~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvk 179 (825)
T KOG0267|consen 101 EAKIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVK 179 (825)
T ss_pred hhhhhhhhhccccCcceeeecc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceee
Confidence 9999999999999999999999 788889999999999999998888888887654 88999999999999999999999
Q ss_pred EEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEE
Q 010470 377 LWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVA 456 (510)
Q Consensus 377 i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 456 (510)
+||...|+....|..|. +.+.++.|+|..-+++.|+.|+++++||+++.+.+......... +.+..|+|+|..++
T Consensus 180 i~d~~agk~~~ef~~~e-~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~----v~~~~fn~~~~~~~ 254 (825)
T KOG0267|consen 180 IWDLTAGKLSKEFKSHE-GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDG----VRSLAFNPDGKIVL 254 (825)
T ss_pred eeccccccccccccccc-ccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCC----ceeeeecCCceeee
Confidence 99999999999999887 89999999999999999999999999999998887776665444 44589999999999
Q ss_pred EEcCCC
Q 010470 457 AGSADG 462 (510)
Q Consensus 457 ~~~~dg 462 (510)
+|....
T Consensus 255 ~G~q~s 260 (825)
T KOG0267|consen 255 SGEQIS 260 (825)
T ss_pred cCchhh
Confidence 887654
No 135
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=4.7e-25 Score=204.30 Aligned_cols=317 Identities=22% Similarity=0.331 Sum_probs=241.8
Q ss_pred HHhhhhcCCceEEecccccccc--------cccC---CCc-cce----------eeccccccceEEEEEecCCCEEEEee
Q 010470 187 EKLAKQQVDGVVRRSEEGAEFF--------AEST---VPS-TCK----------HKINAHEGGCASILFEYNSARLISGG 244 (510)
Q Consensus 187 ~~~~~~~~d~~~~~~~~~~~~~--------~~~~---~~~-~~~----------~~~~~h~~~v~~~~~s~~~~~l~s~~ 244 (510)
-.+++++.|..||+|....... .... .|. .+. ..+.||.+.|.++.|+|.+..|++++
T Consensus 207 ~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSAS 286 (764)
T KOG1063|consen 207 LLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSAS 286 (764)
T ss_pred EEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecc
Confidence 3467889999999997322110 0000 111 111 22459999999999999999999999
Q ss_pred CCCeEEEEeCCCCcc-------eecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC---CeeEeecCCCCceEE
Q 010470 245 QDKSIKLWDTNTGSL-------SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG---RVRHTLTGHTDKVCA 314 (510)
Q Consensus 245 ~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~ 314 (510)
.|.++.+|...+..- +....+..+...+..|+|+++.+++-+..|..++|..... .....+.||.+.|.+
T Consensus 287 aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~d 366 (764)
T KOG1063|consen 287 ADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKD 366 (764)
T ss_pred cCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccccccee
Confidence 999999998765421 2333455677899999999999999999999999983222 244456899999999
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEECCCCeEe--eee----eecCceeEEEEcCCCCEEEEecCCCcEEEEECCC------
Q 010470 315 VDVSKISSRHVVSAAYDRTLKVWDLHKGYCV--NTI----IFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQT------ 382 (510)
Q Consensus 315 i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~----~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~------ 382 (510)
++|.| .+.++++.|.|.+-++|-.- |+.. ..+ .+....+|+++-+....+++|.....+++|+...
T Consensus 367 v~W~p-sGeflLsvs~DQTTRlFa~w-g~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l 444 (764)
T KOG1063|consen 367 VDWDP-SGEFLLSVSLDQTTRLFARW-GRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSL 444 (764)
T ss_pred eeecC-CCCEEEEeccccceeeeccc-ccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHH
Confidence 99999 88999999999999998754 2211 111 2234589999987667788888888899997521
Q ss_pred ----C----------------------ce--------------------------------------------eeeeccc
Q 010470 383 ----G----------------------KL--------------------------------------------LSEVAAH 392 (510)
Q Consensus 383 ----~----------------------~~--------------------------------------------~~~~~~~ 392 (510)
+ +. +.++.+|
T Consensus 445 ~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGH 524 (764)
T KOG1063|consen 445 MAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGH 524 (764)
T ss_pred HHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccC
Confidence 0 00 0111223
Q ss_pred ccccEEEEEEcCCCCEEEEEecCC-----cEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEE
Q 010470 393 SLAAVTSISLSRSGNIILTSGRDN-----LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIW 467 (510)
Q Consensus 393 ~~~~i~~i~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iw 467 (510)
. ..|.+++.+|+|+++++++... .|++|+..+......+..|.-.+.. ++|||||+||++.+.|.++.+|
T Consensus 525 G-yEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~----l~FSpdg~~LLsvsRDRt~sl~ 599 (764)
T KOG1063|consen 525 G-YEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTR----LAFSPDGRYLLSVSRDRTVSLY 599 (764)
T ss_pred c-eeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEE----EEECCCCcEEEEeecCceEEee
Confidence 3 6799999999999999998664 6899999998888888888776655 9999999999999999999999
Q ss_pred eCCCcc----eeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 468 SISKAD----IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 468 d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
...... .....+.|..-|.++.|+|++.+++|++.|.+|+||.
T Consensus 600 ~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 600 EVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred eeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 875432 2344678999999999999999999999999999994
No 136
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.9e-25 Score=196.26 Aligned_cols=272 Identities=18% Similarity=0.330 Sum_probs=221.7
Q ss_pred HhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCC-EEEEeeCCCeEEEEeCCCCcce--eccc
Q 010470 188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSA-RLISGGQDKSIKLWDTNTGSLS--STLY 264 (510)
Q Consensus 188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~--~~~~ 264 (510)
.+.++..|+.++++..... ....++.+.--..+|.+.+|.|+|. .+++++....++.||+.+.+.. ....
T Consensus 227 lllvaG~d~~lrifqvDGk-------~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~ 299 (514)
T KOG2055|consen 227 LLLVAGLDGTLRIFQVDGK-------VNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPY 299 (514)
T ss_pred eEEEecCCCcEEEEEecCc-------cChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCC
Confidence 3445566666666653331 1224555555677999999999999 8999999999999999987763 3344
Q ss_pred ccc-cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 010470 265 GCL-GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY 343 (510)
Q Consensus 265 ~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 343 (510)
++. ..+.....+|++++|+..+..|.|.+....+++.+.+++ ..+.|..++|+. ++..|++++.+|.|.+||++...
T Consensus 300 g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~ 377 (514)
T KOG2055|consen 300 GVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNS 377 (514)
T ss_pred CcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcc
Confidence 443 356677889999999999999999999999999998887 668899999997 77888888889999999999999
Q ss_pred EeeeeeecCce--eEEEEcCCCCEEEEecCCCcEEEEECCC------CceeeeecccccccEEEEEEcCCCCEEEEEec-
Q 010470 344 CVNTIIFHSNC--NALAFSMDGQTIFSGHIDGNLRLWDIQT------GKLLSEVAAHSLAAVTSISLSRSGNIILTSGR- 414 (510)
Q Consensus 344 ~~~~~~~~~~i--~~i~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~- 414 (510)
+++.+...+.+ +++|.+++|.+|++|+..|.|.|||..+ .+++..+..-. ..|+++.|+|++.+|+.++.
T Consensus 378 ~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt-t~Itsl~Fn~d~qiLAiaS~~ 456 (514)
T KOG2055|consen 378 CLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT-TAITSLQFNHDAQILAIASRV 456 (514)
T ss_pred eEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh-eeeeeeeeCcchhhhhhhhhc
Confidence 99999877664 6788889999999999999999999643 45666666555 78999999999999988774
Q ss_pred -CCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470 415 -DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS 470 (510)
Q Consensus 415 -d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 470 (510)
.+.+++..+.+......++.....+ ..+.+++|||.|.++|.|...|.|.+|.+.
T Consensus 457 ~knalrLVHvPS~TVFsNfP~~n~~v-g~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 457 KKNALRLVHVPSCTVFSNFPTSNTKV-GHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cccceEEEeccceeeeccCCCCCCcc-cceEEEEecCCCceEEeecCCCceeeEeec
Confidence 5689999998888877777665444 457789999999999999999999999874
No 137
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=4e-25 Score=205.27 Aligned_cols=245 Identities=18% Similarity=0.274 Sum_probs=209.2
Q ss_pred ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecC---CCEEEEEeCCCeEEEEEcCCC
Q 010470 223 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHD---NRSVIAASSSNNLYVWDVNSG 299 (510)
Q Consensus 223 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~ 299 (510)
+...+|.+++.||+|++||+|..-|+++||++........+..|...|.|+.|+.. .++|++++.|..|.|||+...
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn 536 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN 536 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence 34557999999999999999999999999999999988899999999999999753 578999999999999998644
Q ss_pred -CeeEeecCCCCceEEEEEecCC-CCEEEEEeCCCcEEEEECCCCeEeeeee------ecCceeEEEEcCCCCEEEEecC
Q 010470 300 -RVRHTLTGHTDKVCAVDVSKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTII------FHSNCNALAFSMDGQTIFSGHI 371 (510)
Q Consensus 300 -~~~~~~~~~~~~v~~i~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~i~~i~~~~~~~~l~~~~~ 371 (510)
.++.++.+|...|+++.|...+ +..+++++.|..|.+--.........+. .+..+..+++.|+.+++++++.
T Consensus 537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ 616 (1080)
T KOG1408|consen 537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ 616 (1080)
T ss_pred cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEec
Confidence 4788899999999999998733 2578899999887654333111111221 2245889999999999999999
Q ss_pred CCcEEEEECCCCceeeeecccc--cccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEc
Q 010470 372 DGNLRLWDIQTGKLLSEVAAHS--LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCIS 449 (510)
Q Consensus 372 dg~i~i~d~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s 449 (510)
|.+|+|||+.+|+..+.|++.+ .+..--+..+|.|.|+++++.|.++.+||..+++.+....+|...+.. +.|.
T Consensus 617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG----~kF~ 692 (1080)
T KOG1408|consen 617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTG----VKFL 692 (1080)
T ss_pred ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheee----eeec
Confidence 9999999999999999998654 256777889999999999999999999999999999999999888776 9999
Q ss_pred CCCCEEEEEcCCCeEEEEeCCC
Q 010470 450 PDESYVAAGSADGSVYIWSISK 471 (510)
Q Consensus 450 ~~~~~l~~~~~dg~i~iwd~~~ 471 (510)
+|-+.|++.+.||.|.||.+..
T Consensus 693 nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 693 NDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ccchhheeecCCceEEEEECch
Confidence 9999999999999999999864
No 138
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.6e-25 Score=209.89 Aligned_cols=242 Identities=17% Similarity=0.290 Sum_probs=197.4
Q ss_pred ceEEEEEec-CCCEEEEeeCCCeEEEEeCCC---CcceecccccccceeEEEEecC-CCEEEEEeCCCeEEEEEcCCCCe
Q 010470 227 GCASILFEY-NSARLISGGQDKSIKLWDTNT---GSLSSTLYGCLGSVLDLAITHD-NRSVIAASSSNNLYVWDVNSGRV 301 (510)
Q Consensus 227 ~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~ 301 (510)
.+..|.|+. +.++|||++..|.|.+||+.. .+.+..+..|...++++.|++. ..+|++|+.||.|++||++..+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 355667764 567999999999999999987 5667788899999999999875 45788999999999999999999
Q ss_pred eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC-eEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEE
Q 010470 302 RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG-YCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWD 379 (510)
Q Consensus 302 ~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d 379 (510)
..++.+....|..+.|+|..++.|+++...|.+.+||++.. ++...+..| +++.|+.|+|++.+|++|+.|+.|+|||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 99999999999999999988999999999999999999854 444555544 6799999999999999999999999999
Q ss_pred CCCCceeeeecccccccEEEEEEcCCCCE-EEEEe--cCCcEEEEEcCC-ceeeeEeecCCCeeecCceeEEEcC-CCCE
Q 010470 380 IQTGKLLSEVAAHSLAAVTSISLSRSGNI-ILTSG--RDNLHNLFDIRS-LEVCGSLRATGNRVASNWSRSCISP-DESY 454 (510)
Q Consensus 380 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~--~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~ 454 (510)
..+++.-.....+...++.++.|-|...+ |++++ .|-.|+|||++. .-+..++..|...+.. ++|.. |...
T Consensus 249 ~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~----i~W~~~d~~~ 324 (839)
T KOG0269|consen 249 MTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTG----IAWDSGDRIN 324 (839)
T ss_pred ccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccc----eeccCCCcee
Confidence 98776555555555589999999998765 45544 466899999985 3445566666666655 77754 5567
Q ss_pred EEEEcCCCeEEEEeCCCc
Q 010470 455 VAAGSADGSVYIWSISKA 472 (510)
Q Consensus 455 l~~~~~dg~i~iwd~~~~ 472 (510)
+.+++.||+|..-.+++.
T Consensus 325 l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 325 LWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eEeecCccHHHHhhhhcc
Confidence 889999998876655544
No 139
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.94 E-value=9.3e-25 Score=194.67 Aligned_cols=262 Identities=18% Similarity=0.247 Sum_probs=210.2
Q ss_pred ceEEEEEecCCC-EEEEeeCCCeEEEEeCCCC--cceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeE
Q 010470 227 GCASILFEYNSA-RLISGGQDKSIKLWDTNTG--SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH 303 (510)
Q Consensus 227 ~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 303 (510)
++.++.|+.... .+++.+.|..|++|.-... .....-......-.|++......|+++|+..+.|+|||+....+.+
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr 115 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR 115 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh
Confidence 489999987653 2344456788999975432 1211111112244555555566899999999999999999777888
Q ss_pred eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC--ceeEEEEcCCCCEEE-EecCCCcEEEEEC
Q 010470 304 TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS--NCNALAFSMDGQTIF-SGHIDGNLRLWDI 380 (510)
Q Consensus 304 ~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~i~~i~~~~~~~~l~-~~~~dg~i~i~d~ 380 (510)
.+++|...|+++.++. .+.+|++++..|.|.|..+.++.....+...+ .+.-+.|+|..++++ +++.+|.|.+||+
T Consensus 116 ~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv 194 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDV 194 (673)
T ss_pred hccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEec
Confidence 8899999999999988 78999999999999999999998887777663 367899999777655 7889999999999
Q ss_pred CCCceeeeecccccccEEEEEEcCCC-CEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEc
Q 010470 381 QTGKLLSEVAAHSLAAVTSISLSRSG-NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGS 459 (510)
Q Consensus 381 ~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 459 (510)
....++..+...|..+...|+|+|.+ .+|++.+.|..|.+||.+.......+... .+++.++|+++|.+|++|+
T Consensus 195 ~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~-----~Plstvaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 195 QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS-----HPLSTVAFSECGTYLCAGN 269 (673)
T ss_pred cCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeec-----CCcceeeecCCceEEEeec
Confidence 88888888877776899999999965 57788999999999999977665555433 2345599999999999999
Q ss_pred CCCeEEEEeCCC-cceeecccccCcCEEEEEEeCCC
Q 010470 460 ADGSVYIWSISK-ADIVRTLKEHTAPVLSCSWSGLG 494 (510)
Q Consensus 460 ~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~ 494 (510)
..|.|..||+.. ..++..+..|...|++++|-|.-
T Consensus 270 s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 270 SKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 999999999986 56788899999999999998764
No 140
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=5e-24 Score=179.14 Aligned_cols=260 Identities=18% Similarity=0.365 Sum_probs=191.3
Q ss_pred cccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCC----cceecccccccceeEEEEec--CCCEEEEEeCCCeEEEEE
Q 010470 222 NAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG----SLSSTLYGCLGSVLDLAITH--DNRSVIAASSSNNLYVWD 295 (510)
Q Consensus 222 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd 295 (510)
.+|.+-|+|+.|++.|+++|+|+.|++|+|||..+. .+......|.+.|..+.|.+ -|+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 478899999999999999999999999999996433 33455678999999999965 488999999999999997
Q ss_pred cCC---------CCeeEeecCCCCceEEEEEecC-CCCEEEEEeCCCcEEEEECCCCeEee------eee--------ec
Q 010470 296 VNS---------GRVRHTLTGHTDKVCAVDVSKI-SSRHVVSAAYDRTLKVWDLHKGYCVN------TII--------FH 351 (510)
Q Consensus 296 ~~~---------~~~~~~~~~~~~~v~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~------~~~--------~~ 351 (510)
-.. .....++......|+++.|.|. -+-.+++++.||.++||+......+. .+. .+
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 521 1134556667889999999995 35578999999999999876432221 121 23
Q ss_pred CceeEEEEcCC---CCEEEEecCC-----CcEEEEECCCC----ceeeeecccccccEEEEEEcCC----CCEEEEEecC
Q 010470 352 SNCNALAFSMD---GQTIFSGHID-----GNLRLWDIQTG----KLLSEVAAHSLAAVTSISLSRS----GNIILTSGRD 415 (510)
Q Consensus 352 ~~i~~i~~~~~---~~~l~~~~~d-----g~i~i~d~~~~----~~~~~~~~~~~~~i~~i~~~~~----~~~l~~~~~d 415 (510)
....|+.|+|. ..+|++|+.+ +.++||....+ ..+..+..+. .+|++|+|.|+ -..|++++.|
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~-dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT-DPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC-CcceeeeeccccCCceeeEEEeecC
Confidence 45789999873 4678888866 47888876443 2344555555 89999999996 3478999999
Q ss_pred CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCC
Q 010470 416 NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGK 495 (510)
Q Consensus 416 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 495 (510)
| |+||.+....... ..... ..|+ .-+ ++ .-+.+..+.+|.+.|..+.|+-.|.
T Consensus 249 g-v~I~~v~~~~s~i----~~ee~--------~~~~--------~~~-----~l-~v~~vs~~~~H~~~VWrv~wNmtGt 301 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAI----EEEEV--------LAPD--------LMT-----DL-PVEKVSELDDHNGEVWRVRWNMTGT 301 (361)
T ss_pred c-EEEEEEeeccchh----hhhcc--------cCCC--------Ccc-----cc-ceEEeeeccCCCCceEEEEEeeeee
Confidence 9 9999886321100 00000 0111 111 11 1234566788999999999999999
Q ss_pred cEEEeeCCCeEEEc
Q 010470 496 PLASADKNGVVCVW 509 (510)
Q Consensus 496 ~l~s~~~dg~i~iw 509 (510)
.|++.|.||+|++|
T Consensus 302 iLsStGdDG~VRLW 315 (361)
T KOG2445|consen 302 ILSSTGDDGCVRLW 315 (361)
T ss_pred EEeecCCCceeeeh
Confidence 99999999999999
No 141
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.93 E-value=4e-24 Score=180.83 Aligned_cols=274 Identities=18% Similarity=0.279 Sum_probs=212.1
Q ss_pred cceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc--------e----ecc-cccccceeEEEEe-------cCCCEEEEE
Q 010470 226 GGCASILFEYNSARLISGGQDKSIKLWDTNTGSL--------S----STL-YGCLGSVLDLAIT-------HDNRSVIAA 285 (510)
Q Consensus 226 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~--------~----~~~-~~~~~~v~~~~~~-------~~~~~l~~~ 285 (510)
.-...+.|||||..|++-+.|..+.+|++...-. . .++ ......|...+|- |+..++++.
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 3466789999999999999999999999853110 0 011 1234567777774 678899999
Q ss_pred eCCCeEEEEEcCCCCeeEeecC--CCC---ceEEEEEecCCCCEEEEEeCCCcEEEEEC-CCCeEee---eeee-----c
Q 010470 286 SSSNNLYVWDVNSGRVRHTLTG--HTD---KVCAVDVSKISSRHVVSAAYDRTLKVWDL-HKGYCVN---TIIF-----H 351 (510)
Q Consensus 286 ~~d~~i~iwd~~~~~~~~~~~~--~~~---~v~~i~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~---~~~~-----~ 351 (510)
+.+.-|++||.-+|+....+.+ |.+ ...++.|+| ++..|++|. .+.|++||+ +.|..-. ++.. .
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccc
Confidence 9999999999999998877754 333 346899999 888888776 789999999 5553211 1111 2
Q ss_pred CceeEEEEcCCC-CEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEec-CCcEEEEEcCC-cee
Q 010470 352 SNCNALAFSMDG-QTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR-DNLHNLFDIRS-LEV 428 (510)
Q Consensus 352 ~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~~i~i~d~~~-~~~ 428 (510)
+-+.+++|+|.. ..+++|+....+-||.-..+.++..+.++. +.|+.++|.++|+.|++|.+ +..|..||++. ..+
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~-gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p 286 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHG-GGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP 286 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccC-CCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence 348899999954 588999988889999888888888888777 99999999999999999885 57899999985 444
Q ss_pred eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC-cceeecccccCcCEEEEEEeCCCCcEEEeeCC
Q 010470 429 CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK-ADIVRTLKEHTAPVLSCSWSGLGKPLASADKN 503 (510)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 503 (510)
+..+..+.......+ ...+.|+|++|++|+.||.|++||+++ +..+..+..|...++.++++|--+++++++..
T Consensus 287 v~~L~rhv~~TNQRI-~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 287 VYALERHVGDTNQRI-LFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhhhhccCccceE-EEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 555544443222211 145689999999999999999999998 77788888899999999999998888887654
No 142
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=2.6e-24 Score=185.57 Aligned_cols=208 Identities=23% Similarity=0.395 Sum_probs=174.1
Q ss_pred cceeeccccccceEEEEEecCC--CEEEEeeCCCeEEEEeCCC----------------CcceecccccccceeEEEEec
Q 010470 216 TCKHKINAHEGGCASILFEYNS--ARLISGGQDKSIKLWDTNT----------------GSLSSTLYGCLGSVLDLAITH 277 (510)
Q Consensus 216 ~~~~~~~~h~~~v~~~~~s~~~--~~l~s~~~dg~i~iwd~~~----------------~~~~~~~~~~~~~v~~~~~~~ 277 (510)
......-+|.+.|+.+..++-| .+.++-+..|.|+||++.. .+++.++.+|.+.=+.++|||
T Consensus 142 ~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp 221 (440)
T KOG0302|consen 142 QIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSP 221 (440)
T ss_pred cccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccc
Confidence 3444556899999999888765 4667777899999999842 345677889999999999999
Q ss_pred CC-CEEEEEeCCCeEEEEEcCCCCe---eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC---eEeeeeee
Q 010470 278 DN-RSVIAASSSNNLYVWDVNSGRV---RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG---YCVNTIIF 350 (510)
Q Consensus 278 ~~-~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~ 350 (510)
-. ..|++|..-+.|++|...+|.- ...+.+|+..|-.+.|+|...+.|++||.||+|+|||++.+ .++.+-.+
T Consensus 222 ~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh 301 (440)
T KOG0302|consen 222 IKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAH 301 (440)
T ss_pred ccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeecc
Confidence 43 2478888888999999988763 23567899999999999999999999999999999999988 55555556
Q ss_pred cCceeEEEEcCCCCEEEEecCCCcEEEEECCC---CceeeeecccccccEEEEEEcCC-CCEEEEEecCCcEEEEEcC
Q 010470 351 HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQT---GKLLSEVAAHSLAAVTSISLSRS-GNIILTSGRDNLHNLFDIR 424 (510)
Q Consensus 351 ~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~i~d~~ 424 (510)
.+.|+.|.|+....+|++|+.||++.|||+|. ++++..|..|. .+|++|.|+|. ...|++++.|.+|.+||+.
T Consensus 302 ~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk-~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 302 NSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHK-APITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred CCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEecc-CCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 67899999999888999999999999999985 56788888887 99999999995 4578889999999999985
No 143
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.93 E-value=2.8e-24 Score=198.29 Aligned_cols=271 Identities=14% Similarity=0.257 Sum_probs=216.3
Q ss_pred ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeec
Q 010470 227 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLT 306 (510)
Q Consensus 227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 306 (510)
.|..++|-|||..|+.+.. ..+.+||.+.|..+.++++|...|++++|+.||+.+++|+.|..|.+|+..- +-+-.+
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~LkY- 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILKY- 90 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceeee-
Confidence 7999999999998887764 4799999999999999999999999999999999999999999999998542 222233
Q ss_pred CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCcee
Q 010470 307 GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL 386 (510)
Q Consensus 307 ~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 386 (510)
.|++.|.|+.|+| -...+++++- ...-+|.... +.+........+.+.+|..||.+++.|..+|+|.+-+- +++..
T Consensus 91 SH~D~IQCMsFNP-~~h~LasCsL-sdFglWS~~q-K~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek 166 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNP-ITHQLASCSL-SDFGLWSPEQ-KSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEK 166 (1081)
T ss_pred ccCCeeeEeecCc-hHHHhhhcch-hhccccChhh-hhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcc
Confidence 4999999999999 6778888874 4577887753 33444455567899999999999999999999999864 45444
Q ss_pred eeec--ccccccEEEEEEcCCC-----CEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEc
Q 010470 387 SEVA--AHSLAAVTSISLSRSG-----NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGS 459 (510)
Q Consensus 387 ~~~~--~~~~~~i~~i~~~~~~-----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 459 (510)
..+. +...++|.+++|+|+. ..+++...+.++.+|.+.. +.+. ..........++.+.++|.|+..|+
T Consensus 167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Ig----k~r~L~FdP~CisYf~NGEy~LiGG 241 (1081)
T KOG1538|consen 167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIG----KDRALNFDPCCISYFTNGEYILLGG 241 (1081)
T ss_pred eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eeec----ccccCCCCchhheeccCCcEEEEcc
Confidence 3333 3344899999999963 3677788888888887753 2222 1222222334578889999999999
Q ss_pred CCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 460 ADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 460 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
.|+.+.+|. ..|-.+.++......|+.++..|++++++.|+.||+|--|+
T Consensus 242 sdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 242 SDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred CCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 999999997 56777788777788999999999999999999999997654
No 144
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.7e-24 Score=189.46 Aligned_cols=237 Identities=19% Similarity=0.341 Sum_probs=185.9
Q ss_pred CCEEEEeeCCCeEEEEeCCCCcc---------------------eecccccccceeEEEEecCC-CEEEEEeCCCeEEEE
Q 010470 237 SARLISGGQDKSIKLWDTNTGSL---------------------SSTLYGCLGSVLDLAITHDN-RSVIAASSSNNLYVW 294 (510)
Q Consensus 237 ~~~l~s~~~dg~i~iwd~~~~~~---------------------~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iw 294 (510)
|+++|.|+.|..|.|||+.--.. -..-.+|...|.+++|+.+- +.|++||.|.+|.+|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 67999999999999999852110 01123688888899997764 467888999999999
Q ss_pred EcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC-CeEeeeeeecCceeEEEEcCC-CCEEEEecCC
Q 010470 295 DVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK-GYCVNTIIFHSNCNALAFSMD-GQTIFSGHID 372 (510)
Q Consensus 295 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d 372 (510)
|+.++++..++..|.+.|.++.|+|..+.++++|+.|++|.+.|.+. +..-..+...+.|-.++|.|. ...+++++.|
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tdd 351 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDD 351 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCC
Confidence 99999999999999999999999999999999999999999999984 333445566778999999984 4577789999
Q ss_pred CcEEEEECCCC-ceeeeecccccccEEEEEEcCCC-CEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcC
Q 010470 373 GNLRLWDIQTG-KLLSEVAAHSLAAVTSISLSRSG-NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP 450 (510)
Q Consensus 373 g~i~i~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 450 (510)
|+|+-+|+|+. +++.++..|. ++|.++++++.- .++++++.|+.+++|++.......... +.... ....+.++.|
T Consensus 352 G~v~~~D~R~~~~~vwt~~AHd-~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~-~~~~~-~rl~c~~~~~ 428 (463)
T KOG0270|consen 352 GTVYYFDIRNPGKPVWTLKAHD-DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE-HSFKL-GRLHCFALDP 428 (463)
T ss_pred ceEEeeecCCCCCceeEEEecc-CCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc-ccccc-cceeecccCC
Confidence 99999999975 8999999988 899999999864 578889999999999987533321111 11111 1123355566
Q ss_pred CCC-EEEEEcCCCeEEEEeCCCcceee
Q 010470 451 DES-YVAAGSADGSVYIWSISKADIVR 476 (510)
Q Consensus 451 ~~~-~l~~~~~dg~i~iwd~~~~~~~~ 476 (510)
+-. +++.|+..+.++|||+.+...+.
T Consensus 429 ~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 429 DVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred CcceEEEecCccceEEEeecccChhHH
Confidence 544 57778888899999998876543
No 145
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=9.7e-24 Score=182.93 Aligned_cols=292 Identities=16% Similarity=0.210 Sum_probs=221.6
Q ss_pred ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC------Ccceeccc-ccccceeEEEEecCCCEEEEEeCCC
Q 010470 217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT------GSLSSTLY-GCLGSVLDLAITHDNRSVIAASSSN 289 (510)
Q Consensus 217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~ 289 (510)
|.+-+.+|.|.|+++.||.++++|++|+.|..+++|+++. .+++.... .|...|.|++|...+..+++|..++
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 5667889999999999999999999999999999999863 24444333 4568999999999999999999999
Q ss_pred eEEEEEcCCCCeeEeecC--CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe-Eee---eeeecCceeEEEEcCC-
Q 010470 290 NLYVWDVNSGRVRHTLTG--HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY-CVN---TIIFHSNCNALAFSMD- 362 (510)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~---~~~~~~~i~~i~~~~~- 362 (510)
+|..-|+++.+.+..+.. ..+.|+.+..+| ..+.|++.+.+|.|.+||.+... .+. .-..+.....+.|+|.
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 999999999888777752 235899999999 58889999999999999998654 222 2233455788999995
Q ss_pred CCEEEEecCCCcEEEEECCCCce-eeeecccc-----cccEEEEEEcCCCCEEEEEecCCcEEEEEcCCcee-eeEeecC
Q 010470 363 GQTIFSGHIDGNLRLWDIQTGKL-LSEVAAHS-----LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV-CGSLRAT 435 (510)
Q Consensus 363 ~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~-----~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~ 435 (510)
..+|++.+..|-+-+||.+.... +....... ...-.++.|+|+|+.|.+--....-.+||+-+..+ +..+...
T Consensus 207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N 286 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHN 286 (609)
T ss_pred ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCC
Confidence 45677888889999999987542 22211111 12335788999999998887777777888876433 3333211
Q ss_pred --CCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc-----------------------ceeecccccCcCEEEEEE
Q 010470 436 --GNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA-----------------------DIVRTLKEHTAPVLSCSW 490 (510)
Q Consensus 436 --~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-----------------------~~~~~~~~~~~~v~~~~~ 490 (510)
+....+.+.+++|..|- .+++|+.+-.|++|.+... +.+..+++|.+-++.+.|
T Consensus 287 ~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF 365 (609)
T KOG4227|consen 287 PNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRF 365 (609)
T ss_pred CCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceee
Confidence 11222334446665544 4999999999999987531 124557899999999999
Q ss_pred eCCCCcEEEeeCCCeEEEcC
Q 010470 491 SGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 491 ~~~~~~l~s~~~dg~i~iwd 510 (510)
+|...+|++.|-.+.+++|+
T Consensus 366 ~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 366 SQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred cCCcceEeccchhhheeccc
Confidence 99999999999999999995
No 146
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.93 E-value=2e-24 Score=177.60 Aligned_cols=288 Identities=18% Similarity=0.236 Sum_probs=204.8
Q ss_pred CCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc-ccccceeEEEEecCCCEEEEEeCCCeE
Q 010470 213 VPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY-GCLGSVLDLAITHDNRSVIAASSSNNL 291 (510)
Q Consensus 213 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i 291 (510)
+|+.+.+.+++|.+.|+++.|..++ +|.+|..-|.|.+|++.+......+. .+...|+.+...|+ ..+.+-+.|+.+
T Consensus 2 ~pPdP~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L 79 (323)
T KOG0322|consen 2 VPPDPFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLL 79 (323)
T ss_pred CCCCCeeEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceE
Confidence 4677888999999999999999877 59999999999999999998888887 56778899988887 568899999999
Q ss_pred EEEEcCCCCeeEeecCCCCceEEEEEecC----CC----CEEEEEeCCC-cEEEEECCCCeEeeeeeec-----CceeEE
Q 010470 292 YVWDVNSGRVRHTLTGHTDKVCAVDVSKI----SS----RHVVSAAYDR-TLKVWDLHKGYCVNTIIFH-----SNCNAL 357 (510)
Q Consensus 292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~----~~----~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~-----~~i~~i 357 (510)
.+|++.-+..+.. |.-.+.++.|.+. ++ ..++.-+... .+.+-|......+...... +.+.|.
T Consensus 80 ~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~ 156 (323)
T KOG0322|consen 80 ILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQ 156 (323)
T ss_pred EEEEccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeee
Confidence 9999986554322 3333344444331 00 1111111000 1122222111111111111 235555
Q ss_pred EEcC-CCC--EEEEecCCCcEEEEECCCCceee----------eecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC
Q 010470 358 AFSM-DGQ--TIFSGHIDGNLRLWDIQTGKLLS----------EVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR 424 (510)
Q Consensus 358 ~~~~-~~~--~l~~~~~dg~i~i~d~~~~~~~~----------~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 424 (510)
.+.. ++. ++++|..+|.+.+||+.++..+. ....+. .++.++.|.+.-..=++|+.+..+..|++.
T Consensus 157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~-qpvlsldyas~~~rGisgga~dkl~~~Sl~ 235 (323)
T KOG0322|consen 157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHK-QPVLSLDYASSCDRGISGGADDKLVMYSLN 235 (323)
T ss_pred eccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhcc-CcceeeeechhhcCCcCCCccccceeeeec
Confidence 5322 333 45689999999999999874333 333344 789999999877777788888888888876
Q ss_pred Cc----eeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEe
Q 010470 425 SL----EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASA 500 (510)
Q Consensus 425 ~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 500 (510)
.. +.......... .+..+.+-||++.+|+++.||+|+||+..+..++..++.|...|++++|+|+...++++
T Consensus 236 ~s~gslq~~~e~~lknp----Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaa 311 (323)
T KOG0322|consen 236 HSTGSLQIRKEITLKNP----GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAA 311 (323)
T ss_pred cccCcccccceEEecCC----CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhc
Confidence 32 11122222222 23347899999999999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEcC
Q 010470 501 DKNGVVCVWT 510 (510)
Q Consensus 501 ~~dg~i~iwd 510 (510)
+.|+.|.+|+
T Consensus 312 skD~rISLWk 321 (323)
T KOG0322|consen 312 SKDARISLWK 321 (323)
T ss_pred cCCceEEeee
Confidence 9999999995
No 147
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=1.4e-23 Score=175.31 Aligned_cols=209 Identities=22% Similarity=0.304 Sum_probs=174.4
Q ss_pred cccccceeEEEEec-CCCEEEEEeCCCeEEEEEcCCCC----------eeE-----eecCCCCceEEEEEecCCCCEEEE
Q 010470 264 YGCLGSVLDLAITH-DNRSVIAASSSNNLYVWDVNSGR----------VRH-----TLTGHTDKVCAVDVSKISSRHVVS 327 (510)
Q Consensus 264 ~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~----------~~~-----~~~~~~~~v~~i~~~~~~~~~l~s 327 (510)
..|.+.|+++.+.+ .|+|+++|+.||.|.+||+.... ... .-.+|.-.|.++.|.|.+..+|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 45778999998876 58899999999999999997532 111 124688889999999999999999
Q ss_pred EeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCC---CCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcC
Q 010470 328 AAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMD---GQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSR 404 (510)
Q Consensus 328 ~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~ 404 (510)
++.|.+++|||.++-+....|..+..|.+-+++|- .-++++|..+-.|++.|+.+|.....+.+|. ..|.++.|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr-~~vlaV~Wsp 198 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR-DGVLAVEWSP 198 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc-CceEEEEecc
Confidence 99999999999999999999999999999999983 3467789999999999999999999999998 9999999999
Q ss_pred CCCE-EEEEecCCcEEEEEcCCc-eeeeEeecCC----------CeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc
Q 010470 405 SGNI-ILTSGRDNLHNLFDIRSL-EVCGSLRATG----------NRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA 472 (510)
Q Consensus 405 ~~~~-l~~~~~d~~i~i~d~~~~-~~~~~~~~~~----------~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 472 (510)
...+ |++|+.||.|++||++.. .....+..+. ..+...+..++|+.+|.++++++.|..+++|+..+|
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 8775 678999999999999864 3333333222 122335667999999999999999999999999877
Q ss_pred c
Q 010470 473 D 473 (510)
Q Consensus 473 ~ 473 (510)
+
T Consensus 279 ~ 279 (397)
T KOG4283|consen 279 R 279 (397)
T ss_pred c
Confidence 5
No 148
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.1e-23 Score=177.58 Aligned_cols=236 Identities=16% Similarity=0.297 Sum_probs=183.5
Q ss_pred eeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee
Q 010470 270 VLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII 349 (510)
Q Consensus 270 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 349 (510)
..|+.|++.|.+|++|+.||.|.|||+.+...-+.+.+|..+|++++|++ +++.|+++|.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 68999999999999999999999999999999899999999999999999 99999999999999999999999999999
Q ss_pred ecCceeEEEEcCCCC-EEEEecCCCcEEEEECCCCceeeeecccc----cccEEEEEEcCCCCEEEEEecCCcEEEEEcC
Q 010470 350 FHSNCNALAFSMDGQ-TIFSGHIDGNLRLWDIQTGKLLSEVAAHS----LAAVTSISLSRSGNIILTSGRDNLHNLFDIR 424 (510)
Q Consensus 350 ~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 424 (510)
..++|....|+|... .+++.-.+..-.+.++..++.. .+.... .....+..|.+.|+++++|...|.+.+||..
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 999999999999433 3333333333444454432211 111111 1122334689999999999999999999999
Q ss_pred CceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC-------cce--eecccc--cCcCEEEEEEeCC
Q 010470 425 SLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK-------ADI--VRTLKE--HTAPVLSCSWSGL 493 (510)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~-------~~~--~~~~~~--~~~~v~~~~~~~~ 493 (510)
+.+++..++... ...+..+-++..|++|+..+.|..|+.|++.. +++ ...+.. ....-.+++|+.+
T Consensus 184 t~e~vas~rits---~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d 260 (405)
T KOG1273|consen 184 TLECVASFRITS---VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD 260 (405)
T ss_pred hheeeeeeeech---heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCC
Confidence 999988887665 23344588999999999999999999999762 121 122221 2234568899999
Q ss_pred CCcEEEeeC-CCeEEEcC
Q 010470 494 GKPLASADK-NGVVCVWT 510 (510)
Q Consensus 494 ~~~l~s~~~-dg~i~iwd 510 (510)
|.|++.++. -..++||.
T Consensus 261 geYv~a~s~~aHaLYIWE 278 (405)
T KOG1273|consen 261 GEYVCAGSARAHALYIWE 278 (405)
T ss_pred ccEEEeccccceeEEEEe
Confidence 999887764 45688884
No 149
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.92 E-value=1e-23 Score=178.80 Aligned_cols=287 Identities=20% Similarity=0.305 Sum_probs=212.8
Q ss_pred ccccccceEEEEEec-----CCCEEEEeeCCCeEEEEeCCCCc---ceeccc--ccccceeEEEEecC----CCEEEEEe
Q 010470 221 INAHEGGCASILFEY-----NSARLISGGQDKSIKLWDTNTGS---LSSTLY--GCLGSVLDLAITHD----NRSVIAAS 286 (510)
Q Consensus 221 ~~~h~~~v~~~~~s~-----~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~--~~~~~v~~~~~~~~----~~~l~~~~ 286 (510)
...|+.+|..++|++ ....+++.|. ..+.+|.....- .+..+. .|......++|+-+ +.++++++
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 457889999999985 2345666664 578888875432 222222 36667778888654 45788899
Q ss_pred CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec----CceeEEEEcCC
Q 010470 287 SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH----SNCNALAFSMD 362 (510)
Q Consensus 287 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~i~~i~~~~~ 362 (510)
.-|.|+|.|+.++++...+.+|...|..+.++|...++++++|.|..|++|++.+..++..+.+- ..|.++.|+++
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~ 192 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD 192 (385)
T ss_pred ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC
Confidence 99999999999999999999999999999999988899999999999999999999999988643 45999999999
Q ss_pred CCEEEEecCCCcEEEEECCCCceeeeec---------------------------ccccccEEEEEEcCCCCEEEEEecC
Q 010470 363 GQTIFSGHIDGNLRLWDIQTGKLLSEVA---------------------------AHSLAAVTSISLSRSGNIILTSGRD 415 (510)
Q Consensus 363 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------------------------~~~~~~i~~i~~~~~~~~l~~~~~d 415 (510)
|.+|++++.|..|.+|++...+....+. ..+...|.|+.|- |+++++-+-+
T Consensus 193 gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSksce 270 (385)
T KOG1034|consen 193 GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCE 270 (385)
T ss_pred CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccC
Confidence 9999999999999999997432111110 0011233334432 6788998899
Q ss_pred CcEEEEEcCC-ceeeeEe---------ecCCCeeec--CceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceee--cccc-
Q 010470 416 NLHNLFDIRS-LEVCGSL---------RATGNRVAS--NWSRSCISPDESYVAAGSADGSVYIWSISKADIVR--TLKE- 480 (510)
Q Consensus 416 ~~i~i~d~~~-~~~~~~~---------~~~~~~~~~--~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~- 480 (510)
+.|..|.... .+.+... .+......+ .+...+|.|-++.||.|...|.|++||+.+..+.. ++..
T Consensus 271 naI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s 350 (385)
T KOG1034|consen 271 NAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHS 350 (385)
T ss_pred ceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEec
Confidence 9999998721 2211111 111111111 23345677889999999999999999999877632 2211
Q ss_pred -cCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 481 -HTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 481 -~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
....|...+|+.||..|+..++||.|.-||
T Consensus 351 ~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 351 KSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred cccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 245688999999999999999999999886
No 150
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.7e-22 Score=185.83 Aligned_cols=270 Identities=18% Similarity=0.327 Sum_probs=213.9
Q ss_pred HhhhhcCCceEEecccccccccccCCCccceeecccc-ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc
Q 010470 188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAH-EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC 266 (510)
Q Consensus 188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 266 (510)
.++-+..+|.+.+|+.....+ +...+.|| ++.|.+++|+ +|..|++.+.+|.|.-||+.+++....+...
T Consensus 39 ~lAvsRt~g~IEiwN~~~~w~--------~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~ 109 (691)
T KOG2048|consen 39 QLAVSRTDGNIEIWNLSNNWF--------LEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSN 109 (691)
T ss_pred ceeeeccCCcEEEEccCCCce--------eeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCC
Confidence 366677899999999766433 44455555 4579999999 5568888899999999999999999999999
Q ss_pred ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeE--eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 010470 267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH--TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC 344 (510)
Q Consensus 267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 344 (510)
.+.|++++.+|.+..+++|+.||.++.++...++... .+....+.|.+++|+| ++..+++|+.||.|++||..++..
T Consensus 110 gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t 188 (691)
T KOG2048|consen 110 GGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQT 188 (691)
T ss_pred CcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC-CccEEEecccCceEEEEEcCCCce
Confidence 9999999999999999999999988888887776543 3445678999999999 888899999999999999999887
Q ss_pred eeeeee-----cC--c--eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC
Q 010470 345 VNTIIF-----HS--N--CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD 415 (510)
Q Consensus 345 ~~~~~~-----~~--~--i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 415 (510)
+..... .. + +.++.+- ....|++|...|+|.+||...+..+..+..+. ..|.+++..++++++++++.|
T Consensus 189 ~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~-adVl~Lav~~~~d~vfsaGvd 266 (691)
T KOG2048|consen 189 LHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHD-ADVLALAVADNEDRVFSAGVD 266 (691)
T ss_pred EEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchhhhhhhhh-cceeEEEEcCCCCeEEEccCC
Confidence 763321 12 1 5666666 44578999999999999999999999999888 899999999999999999999
Q ss_pred CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC
Q 010470 416 NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK 471 (510)
Q Consensus 416 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 471 (510)
+.|..|...+...-.............+.+++..++ .+++|+.|+.+.+-....
T Consensus 267 ~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 267 PKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred CceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 999988877653311111111122223334666655 899999999988876544
No 151
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.2e-24 Score=211.32 Aligned_cols=276 Identities=17% Similarity=0.283 Sum_probs=213.5
Q ss_pred EEEEecCCC-EEEEe----------eCCCeEEEEeCCC--Cc----ceecccccccceeEEEEecCCCE----EEEEeCC
Q 010470 230 SILFEYNSA-RLISG----------GQDKSIKLWDTNT--GS----LSSTLYGCLGSVLDLAITHDNRS----VIAASSS 288 (510)
Q Consensus 230 ~~~~s~~~~-~l~s~----------~~dg~i~iwd~~~--~~----~~~~~~~~~~~v~~~~~~~~~~~----l~~~~~d 288 (510)
.++|+|.+. ++++| +.+.++-||.+.- .. .+..+ ......+.++|.+.|.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-cccccceeeeecccCCCccceeeccccC
Confidence 467888776 45544 3355666776532 22 22222 23456789999988876 7777899
Q ss_pred CeEEEEEcCC---C---CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee---eecCceeEEEE
Q 010470 289 NNLYVWDVNS---G---RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI---IFHSNCNALAF 359 (510)
Q Consensus 289 ~~i~iwd~~~---~---~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~i~~i~~ 359 (510)
|.|.+||... + ..+.+...|.+.|..+.|++..++.+++|+.||.|.|||+.+-..-... ...+.|.+++|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 9999999865 2 2456677899999999999988889999999999999999864433333 23356999999
Q ss_pred cC-CCCEEEEecCCCcEEEEECCCCceeeeeccccc-ccEEEEEEcCCCC-EEEEEecCC---cEEEEEcCC-ceeeeEe
Q 010470 360 SM-DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL-AAVTSISLSRSGN-IILTSGRDN---LHNLFDIRS-LEVCGSL 432 (510)
Q Consensus 360 ~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~i~~i~~~~~~~-~l~~~~~d~---~i~i~d~~~-~~~~~~~ 432 (510)
+. ....|++++.+|.+.|||++..+++..+..+.. ..+..+.|+|++. .+++++.|. .|.+||+|. ..+.+.+
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~ 249 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL 249 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh
Confidence 87 445677899999999999999988888876643 4588999999865 455554443 799999985 4455666
Q ss_pred ecCCCeeecCceeEEEcCCC-CEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCC-cEEEeeCCCeEEEcC
Q 010470 433 RATGNRVASNWSRSCISPDE-SYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGK-PLASADKNGVVCVWT 510 (510)
Q Consensus 433 ~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd 510 (510)
.+|...+.+ +.|++.+ .++++++.|+.|.+|+.++++.+..+....+.+..+.|+|... .++.++.||.|.||+
T Consensus 250 ~~H~~Gils----lsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 250 EGHQRGILS----LSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYS 325 (1049)
T ss_pred cccccceee----eccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeee
Confidence 677666554 8888865 8999999999999999999999999998888999999999887 778889999999874
No 152
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=5.6e-23 Score=181.21 Aligned_cols=270 Identities=18% Similarity=0.277 Sum_probs=197.2
Q ss_pred EEEecCCCEEEEeeCCC---e--EEEEeCCCCcceeccccc-----ccceeEEEEec-------CCCEEEEEeCCCeEEE
Q 010470 231 ILFEYNSARLISGGQDK---S--IKLWDTNTGSLSSTLYGC-----LGSVLDLAITH-------DNRSVIAASSSNNLYV 293 (510)
Q Consensus 231 ~~~s~~~~~l~s~~~dg---~--i~iwd~~~~~~~~~~~~~-----~~~v~~~~~~~-------~~~~l~~~~~d~~i~i 293 (510)
+..-|..++++++-.+. . |+||+-... .+..| .....|+.|.. .|+|++.|+.|..|.|
T Consensus 131 ~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~----nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeI 206 (463)
T KOG0270|consen 131 EQVKPSDNLILCARNEDDVSYLEVYVYNEEEE----NLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEI 206 (463)
T ss_pred ceeccCCcEEEEeeccCCceEEEEEEEcCCCc----ceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEE
Confidence 44456556666664432 2 555554321 12222 22335666643 3679999999999999
Q ss_pred EEcCCCC---ee------------------EeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-
Q 010470 294 WDVNSGR---VR------------------HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH- 351 (510)
Q Consensus 294 wd~~~~~---~~------------------~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~- 351 (510)
||+.--. +. ....+|++.|.++.|+....+.|++||.|.+|++||+.++++..++..+
T Consensus 207 WDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~ 286 (463)
T KOG0270|consen 207 WDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHG 286 (463)
T ss_pred eccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcC
Confidence 9985210 11 1123689999999999877899999999999999999999999999865
Q ss_pred CceeEEEEcC-CCCEEEEecCCCcEEEEECCCCc-eeeeecccccccEEEEEEcCCC-CEEEEEecCCcEEEEEcCCc-e
Q 010470 352 SNCNALAFSM-DGQTIFSGHIDGNLRLWDIQTGK-LLSEVAAHSLAAVTSISLSRSG-NIILTSGRDNLHNLFDIRSL-E 427 (510)
Q Consensus 352 ~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~~~-~ 427 (510)
..|.++.|+| ...+|++|+.|++|.++|.|... .-..+... +.|-.+.|.|.. ..++++..||+++-+|+|+. +
T Consensus 287 k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~--g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~ 364 (463)
T KOG0270|consen 287 KKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD--GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK 364 (463)
T ss_pred CceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec--cceEEEEecCCCceeEEEecCCceEEeeecCCCCC
Confidence 5699999999 56688899999999999999532 22233332 789999999964 56778889999999999975 8
Q ss_pred eeeEeecCCCeeecCceeEEEcCC-CCEEEEEcCCCeEEEEeCCCcce--eecccccCcCEEEEEEeCCCC-cEEEeeCC
Q 010470 428 VCGSLRATGNRVASNWSRSCISPD-ESYVAAGSADGSVYIWSISKADI--VRTLKEHTAPVLSCSWSGLGK-PLASADKN 503 (510)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d 503 (510)
++.++..|...+.+ +++++. ..++++++.|+.|++|++....+ +..-.-.-+...|+++.|+-. .++.||..
T Consensus 365 ~vwt~~AHd~~ISg----l~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k 440 (463)
T KOG0270|consen 365 PVWTLKAHDDEISG----LSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEK 440 (463)
T ss_pred ceeEEEeccCCcce----EEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCcc
Confidence 89999999887765 888764 55788999999999999875443 222111223456777777765 57788888
Q ss_pred CeEEEcC
Q 010470 504 GVVCVWT 510 (510)
Q Consensus 504 g~i~iwd 510 (510)
+.++|||
T Consensus 441 ~~~~vwd 447 (463)
T KOG0270|consen 441 AVLRVWD 447 (463)
T ss_pred ceEEEee
Confidence 8899997
No 153
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=2.5e-23 Score=191.16 Aligned_cols=250 Identities=22% Similarity=0.309 Sum_probs=182.8
Q ss_pred eeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceec--ccccccceeEEEEecCCC-EEEEEeCCCeEEEE
Q 010470 218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSST--LYGCLGSVLDLAITHDNR-SVIAASSSNNLYVW 294 (510)
Q Consensus 218 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iw 294 (510)
.....+|.+.|..+.|-|....|++++.|.++++||+.++.+... +.+|.+.|.++||.|.+. .|++|+.||.|.||
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 455678999999999999777899999999999999999988777 889999999999999765 57788899999999
Q ss_pred EcCCCC---------------------------eeEeecCCCCceEE---EEEecCCCCEEEEEeC-CCcEEEEECCCCe
Q 010470 295 DVNSGR---------------------------VRHTLTGHTDKVCA---VDVSKISSRHVVSAAY-DRTLKVWDLHKGY 343 (510)
Q Consensus 295 d~~~~~---------------------------~~~~~~~~~~~v~~---i~~~~~~~~~l~s~~~-dg~i~iwd~~~~~ 343 (510)
|++-.. -+.....+...|.+ +.+.. +...|++++. |+.|+|||++..+
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNY 251 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccc
Confidence 986321 01111233344444 33444 6788888887 9999999998765
Q ss_pred Eeeeee--------ec----CceeEEEEcCCCCEEEEecCCCcEEEEECCCCc--eeeeeccccccc-EEEEEEcCCCCE
Q 010470 344 CVNTII--------FH----SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK--LLSEVAAHSLAA-VTSISLSRSGNI 408 (510)
Q Consensus 344 ~~~~~~--------~~----~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~-i~~i~~~~~~~~ 408 (510)
...... .+ ..+.++.....|.++++.+.|+.|++|++.+.. ++..+.++.... -..-..+|++.+
T Consensus 252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~ 331 (720)
T KOG0321|consen 252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS 331 (720)
T ss_pred cccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce
Confidence 433221 11 237788888889999988889999999997643 333333332111 122346899999
Q ss_pred EEEEecCCcEEEEEcCCcee-eeEeecCCCeeecCceeEEEcCCC-CEEEEEcCCCeEEEEeCCCc
Q 010470 409 ILTSGRDNLHNLFDIRSLEV-CGSLRATGNRVASNWSRSCISPDE-SYVAAGSADGSVYIWSISKA 472 (510)
Q Consensus 409 l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~ 472 (510)
+++|+.|...++|.+.+.+. ...+.+|...+.. ++|.|.. .-++++++|.+++||++.++
T Consensus 332 l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~----V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 332 LLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTT----VRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred EeccCCCcceeeeeecCccCChhhhhCcceEEEE----EeeccccCCCceeeccCcceEEEeccCc
Confidence 99999999999999987543 3334455544443 7776632 33666699999999998654
No 154
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=2.7e-22 Score=186.12 Aligned_cols=315 Identities=20% Similarity=0.279 Sum_probs=236.4
Q ss_pred HHhhhhcCCceEEeccccccc-ccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCC---cceec
Q 010470 187 EKLAKQQVDGVVRRSEEGAEF-FAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG---SLSST 262 (510)
Q Consensus 187 ~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~ 262 (510)
..+.+.+.|..+.+|.++... .... ........|..++..+..|+|+++.+++-+..|-.++|..... .....
T Consensus 280 ~~LLSASaDksmiiW~pd~~tGiWv~---~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~ 356 (764)
T KOG1063|consen 280 LDLLSASADKSMIIWKPDENTGIWVD---VVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPV 356 (764)
T ss_pred hhheecccCcceEEEecCCccceEEE---EEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccc
Confidence 457778899999999876531 1111 1123333466778999999999999999999999999983221 23445
Q ss_pred ccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC----eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEE
Q 010470 263 LYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR----VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD 338 (510)
Q Consensus 263 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd 338 (510)
+.||.+.|.+++|+|.|.+|++.+.|.+-++|-.-..+ .+..-+-|...++|+++-+ ....|++|.....+++|+
T Consensus 357 iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~FVSgAdEKVlRvF~ 435 (764)
T KOG1063|consen 357 ISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-EDLQFVSGADEKVLRVFE 435 (764)
T ss_pred cccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-CCceeeecccceeeeeec
Confidence 67999999999999999999999999999998754111 2233356888899999987 577889998888999996
Q ss_pred CCC-------------------------------------------CeE-------------------------------
Q 010470 339 LHK-------------------------------------------GYC------------------------------- 344 (510)
Q Consensus 339 ~~~-------------------------------------------~~~------------------------------- 344 (510)
... |..
T Consensus 436 aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLw 515 (764)
T KOG1063|consen 436 APKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLW 515 (764)
T ss_pred CcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccc
Confidence 421 000
Q ss_pred --eeeeeec-CceeEEEEcCCCCEEEEecCCC-----cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCC
Q 010470 345 --VNTIIFH-SNCNALAFSMDGQTIFSGHIDG-----NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDN 416 (510)
Q Consensus 345 --~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~ 416 (510)
+.++.+| ..+.+++.+|+|+++++++... .|++|+..+-.....+..|. -.|+.+.|||||++|++.++|.
T Consensus 516 PEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~Hs-LTVT~l~FSpdg~~LLsvsRDR 594 (764)
T KOG1063|consen 516 PEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHS-LTVTRLAFSPDGRYLLSVSRDR 594 (764)
T ss_pred hhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccc-eEEEEEEECCCCcEEEEeecCc
Confidence 0111122 3489999999999999987543 59999998888888888887 8999999999999999999999
Q ss_pred cEEEEEcCCceee----eEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc--ceeec--ccccCcCEEEE
Q 010470 417 LHNLFDIRSLEVC----GSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA--DIVRT--LKEHTAPVLSC 488 (510)
Q Consensus 417 ~i~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~--~~~~~~~v~~~ 488 (510)
++.+|........ ...+.|.. -+..+.|+|++.+++++|.|.+|.||..... +.+.. ...+..+|+.+
T Consensus 595 t~sl~~~~~~~~~e~~fa~~k~HtR----IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv 670 (764)
T KOG1063|consen 595 TVSLYEVQEDIKDEFRFACLKAHTR----IIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAV 670 (764)
T ss_pred eEEeeeeecccchhhhhccccccce----EEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeE
Confidence 9999987532211 11223333 3344789999999999999999999998877 44333 23478899999
Q ss_pred EEeCC-----CCcEEEeeCCCeEEEcC
Q 010470 489 SWSGL-----GKPLASADKNGVVCVWT 510 (510)
Q Consensus 489 ~~~~~-----~~~l~s~~~dg~i~iwd 510 (510)
+|.|- +..++.|-..|.|.+|.
T Consensus 671 ~~~~~~~~e~~~~vavGle~GeI~l~~ 697 (764)
T KOG1063|consen 671 AYLPVDHNEKGDVVAVGLEKGEIVLWR 697 (764)
T ss_pred EeeccccccccceEEEEecccEEEEEe
Confidence 99874 22567788899999984
No 155
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=1.7e-22 Score=178.84 Aligned_cols=277 Identities=19% Similarity=0.261 Sum_probs=210.3
Q ss_pred HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEec-CCCEEEEeeCCCeEEEEeCCCCcce--ecc
Q 010470 187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEY-NSARLISGGQDKSIKLWDTNTGSLS--STL 263 (510)
Q Consensus 187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~--~~~ 263 (510)
..++.|..-|.|-+|+.+.+ .....-+..+..|.++|+++.|+| +...+++.|.||+|++-|++.+... ..+
T Consensus 201 ~lva~GdK~G~VG~Wn~~~~-----~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~ 275 (498)
T KOG4328|consen 201 KLVAVGDKGGQVGLWNFGTQ-----EKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSL 275 (498)
T ss_pred eEEEEccCCCcEEEEecCCC-----CCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhc
Confidence 34556677788888886521 112235667889999999999999 4568999999999999999876543 333
Q ss_pred cccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe-eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 010470 264 YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV-RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG 342 (510)
Q Consensus 264 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~ 342 (510)
......+.++.|+.+...++++..=|...+||.+++.. ...+.-|...|++++++|....+++++|.|++.+|||++.-
T Consensus 276 ~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l 355 (498)
T KOG4328|consen 276 DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQL 355 (498)
T ss_pred CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhh
Confidence 33556778888998888899998888999999998764 66677788999999999999999999999999999999853
Q ss_pred e-----EeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECC----CCceeeeeccccc----ccEEEEEEcCCCCEE
Q 010470 343 Y-----CVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQ----TGKLLSEVAAHSL----AAVTSISLSRSGNII 409 (510)
Q Consensus 343 ~-----~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~----~~i~~i~~~~~~~~l 409 (510)
. .+.++.+...|++..|+|++-.|++.+.|..|+|||.. ...+...+...+. -.+.-..|.|+.+++
T Consensus 356 ~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li 435 (498)
T KOG4328|consen 356 RGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLI 435 (498)
T ss_pred cCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEE
Confidence 2 24445555679999999988889999999999999983 3333333332221 134456899999999
Q ss_pred EEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCE-EEEEcCCCeEEEEeCC
Q 010470 410 LTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESY-VAAGSADGSVYIWSIS 470 (510)
Q Consensus 410 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~~~~~dg~i~iwd~~ 470 (510)
++|..-..|-|||-..++.+..+..+...... +...|+|-+.. ++.|+..|.|+||.-.
T Consensus 436 ~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~--~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 436 VVGRYPRPIDVFDGNGGQMVCELHDPESSTIP--SVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred EEeccCcceeEEcCCCCEEeeeccCccccccc--cceeecccccceeccCCccceEEEEecC
Confidence 99999999999999999877776544432222 23678998884 4555567889998644
No 156
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.90 E-value=2.8e-22 Score=174.84 Aligned_cols=290 Identities=19% Similarity=0.284 Sum_probs=205.1
Q ss_pred HhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCC--------C---
Q 010470 188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTN--------T--- 256 (510)
Q Consensus 188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~--------~--- 256 (510)
.++++..|..+++|...................+..|...|+++.|+|+|..|++|+.+|.|.+|... +
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 68899999999999865543333333445667889999999999999999999999999999999765 2
Q ss_pred -----CcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCC
Q 010470 257 -----GSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD 331 (510)
Q Consensus 257 -----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d 331 (510)
......+.+|...|..++|+|++.++++++.|+.+++||+..|.....+..|...|..++|.| -+.++++-+.|
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~d 186 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP-LNQYVASKSSD 186 (434)
T ss_pred hCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecch-hhhhhhhhccC
Confidence 112345678999999999999999999999999999999999999999999999999999999 78899999989
Q ss_pred CcEEEEECCCCeEeeeee--------------------ec----CceeEEEEcCCCCEEEEecC----CCcE-----EEE
Q 010470 332 RTLKVWDLHKGYCVNTII--------------------FH----SNCNALAFSMDGQTIFSGHI----DGNL-----RLW 378 (510)
Q Consensus 332 g~i~iwd~~~~~~~~~~~--------------------~~----~~i~~i~~~~~~~~l~~~~~----dg~i-----~i~ 378 (510)
...+.+.+.....+.... +. +-...++|+|+|..+++... .|.+ ++|
T Consensus 187 r~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvf 266 (434)
T KOG1009|consen 187 RHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVF 266 (434)
T ss_pred cccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEee
Confidence 877777765433322221 00 11456778888888886532 1222 233
Q ss_pred ECCC-CceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEE
Q 010470 379 DIQT-GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAA 457 (510)
Q Consensus 379 d~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 457 (510)
+-.. .++...+.... .+...+.|+| ..|.++.... ... +..-|.+-.+++
T Consensus 267 srk~l~rP~~~lp~~~-k~~lavr~~p--------------Vy~elrp~~~------~~~--------~~~lpyrlvfai 317 (434)
T KOG1009|consen 267 SRKDLKRPAARLPSPK-KPALAVRFSP--------------VYYELRPLSS------EKF--------LFVLPYRLVFAI 317 (434)
T ss_pred ccccccCceeecCCCC-cceEEEEeee--------------eEEEeccccc------ccc--------ccccccceEEEE
Confidence 2211 11122222221 2222333322 1233321100 000 112355566777
Q ss_pred EcCCCeEEEEeCCCcceeecccc-cCcCEEEEEEeCCCCcEEEeeCCCeEEE
Q 010470 458 GSADGSVYIWSISKADIVRTLKE-HTAPVLSCSWSGLGKPLASADKNGVVCV 508 (510)
Q Consensus 458 ~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~i 508 (510)
++.| .|+|||..+-.++....+ |-.+|++++|++||..|+..+.||...+
T Consensus 318 At~~-svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 318 ATKN-SVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred eecc-eEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 7765 599999999888877755 8999999999999999999999998643
No 157
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=8.6e-22 Score=166.51 Aligned_cols=241 Identities=21% Similarity=0.273 Sum_probs=176.6
Q ss_pred ecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC-----eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEE
Q 010470 261 STLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR-----VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLK 335 (510)
Q Consensus 261 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~ 335 (510)
..+.+|.+.|++++|+.||++|++++.|+.|++|+++... +++. +-.-+..+.+.|.|+...+++++-...+++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4578999999999999999999999999999999997632 1111 112235678899997777888888788999
Q ss_pred EEECCCC---eEeeeee------ec----CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEE
Q 010470 336 VWDLHKG---YCVNTII------FH----SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISL 402 (510)
Q Consensus 336 iwd~~~~---~~~~~~~------~~----~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~ 402 (510)
+|.+... .....+. .+ -.+..+-+..++.+|++++.|..|.+|+++ |+.+..+.... ..-+..++
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq-~~n~~aav 236 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ-SSNYDAAV 236 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc-ccccceee
Confidence 9976432 1111110 11 124556666788999999999999999997 99888888776 67778899
Q ss_pred cCCCCEEEEEecCCcEEEEEcC---Cc-----eeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC---
Q 010470 403 SRSGNIILTSGRDNLHNLFDIR---SL-----EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK--- 471 (510)
Q Consensus 403 ~~~~~~l~~~~~d~~i~i~d~~---~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~--- 471 (510)
||+|+++++++..-.|++|.+- .| ..+..+.+|...+.. ++|+++...+++.+.||+++|||++-
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~----~aFsn~S~r~vtvSkDG~wriwdtdVrY~ 312 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLA----AAFSNSSTRAVTVSKDGKWRIWDTDVRYE 312 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheee----eeeCCCcceeEEEecCCcEEEeeccceEe
Confidence 9999999999999999999863 22 223445556555544 89999999999999999999999753
Q ss_pred -c---ceeeccc----ccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 472 -A---DIVRTLK----EHTAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 472 -~---~~~~~~~----~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
+ +.+++.. .-.+....++.+|.|..|+.+.. ..+++|
T Consensus 313 ~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~ 357 (420)
T KOG2096|consen 313 AGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVF 357 (420)
T ss_pred cCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEE
Confidence 1 2222221 12233458999999998876543 345443
No 158
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=1.7e-22 Score=180.40 Aligned_cols=257 Identities=17% Similarity=0.210 Sum_probs=196.6
Q ss_pred CCeEEEEeCCCCcceeccccc--ccceeEEEEecCCCEEEEEe--CCCeEEEEEcCCCC---eeEeecCCCCceEEEEEe
Q 010470 246 DKSIKLWDTNTGSLSSTLYGC--LGSVLDLAITHDNRSVIAAS--SSNNLYVWDVNSGR---VRHTLTGHTDKVCAVDVS 318 (510)
Q Consensus 246 dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~---~~~~~~~~~~~v~~i~~~ 318 (510)
...+++||.........+..| ...+.+++|...+. |++++ .|..+++|.-. |+ ....-....+.-.|+...
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~-g~~~~Vp~~~k~~gd~~~Cv~~~ 88 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKD-GKTPEVPRVRKLTGDNAFCVACA 88 (673)
T ss_pred CCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEeccc-CCCCccceeeccccchHHHHhhh
Confidence 347999998765443333322 33588999987665 44443 67788999743 33 111111122244555554
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccE
Q 010470 319 KISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAV 397 (510)
Q Consensus 319 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i 397 (510)
. ...++++|+..+.|+|||++...+.+.+..| +.|+++.++....+|++++..|.|.|..+.++.....|.......+
T Consensus 89 s-~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsv 167 (673)
T KOG4378|consen 89 S-QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSV 167 (673)
T ss_pred h-cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeE
Confidence 4 4589999999999999999977777777666 4599999999999999999999999999999988888887765778
Q ss_pred EEEEEcCCCCE-EEEEecCCcEEEEEcCCceeeeEee-cCCCeeecCceeEEEcCC-CCEEEEEcCCCeEEEEeCCCcce
Q 010470 398 TSISLSRSGNI-ILTSGRDNLHNLFDIRSLEVCGSLR-ATGNRVASNWSRSCISPD-ESYVAAGSADGSVYIWSISKADI 474 (510)
Q Consensus 398 ~~i~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~ 474 (510)
.-+.|+|..++ |.+++.+|.|.+||+....++..+. .|..+... +||+|. ..+|++.+.|..|.+||+.....
T Consensus 168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~g----icfspsne~l~vsVG~Dkki~~yD~~s~~s 243 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRG----ICFSPSNEALLVSVGYDKKINIYDIRSQAS 243 (673)
T ss_pred EEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCc----ceecCCccceEEEecccceEEEeecccccc
Confidence 89999998774 5678899999999999877665543 45555544 899995 55788899999999999998777
Q ss_pred eecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 475 VRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 475 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
...+. ...|...++|+++|.+|+.|+..|.|+.||
T Consensus 244 ~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 244 TDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYD 278 (673)
T ss_pred cceee-ecCCcceeeecCCceEEEeecCCceEEEEe
Confidence 76665 456889999999999999999999999987
No 159
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.90 E-value=7.8e-24 Score=200.03 Aligned_cols=276 Identities=21% Similarity=0.344 Sum_probs=220.6
Q ss_pred ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470 217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV 296 (510)
Q Consensus 217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 296 (510)
.+..+.||.+.|.|+.|+..|.++++|+.|..|+||..+++.++....||.+.|+.++.+.++.++++++.|..|++|.+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 44568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee------eecCceeEEEEcCCCCEEEEec
Q 010470 297 NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI------IFHSNCNALAFSMDGQTIFSGH 370 (510)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------~~~~~i~~i~~~~~~~~l~~~~ 370 (510)
.++.++..+.+|++.|++++|+|. .+.+.||++++||.+- .++... ....-+.++.|..++.-+.+|+
T Consensus 262 ~~~~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 262 PDGAPVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred CCCchHHHHhccccceeeeccCcc-----ccCCCCCceEeccccc-cccccCCCCCCcccccceeeeecccccccccccc
Confidence 999999999999999999999992 2778899999999871 111111 1123367778888888999999
Q ss_pred CCCcEEEEECCCCceeeeecccccccEEEEEEcCC-CCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEc
Q 010470 371 IDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRS-GNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCIS 449 (510)
Q Consensus 371 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s 449 (510)
.|+.-..|.+..... +. ..+.-+.++.+ ..+.+++-.+..+.+|++.++...+.+.++...... +.++
T Consensus 336 ~d~ea~n~e~~~l~~------~~-~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yv----Ld~H 404 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLAW------RS-NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYV----LDVH 404 (1113)
T ss_pred CCcccccchhhHhhh------hc-cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceee----eeec
Confidence 999888876542110 00 11111111111 245666667778999999999888888887776654 7888
Q ss_pred CCC-CEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 450 PDE-SYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 450 ~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
|-. ....+++.||+..|||+-.|.+++.+....+.+....||++|..++....-|.++|.
T Consensus 405 pfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 405 PFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred CCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEe
Confidence 854 455678999999999999998877665445667888999999999988888888875
No 160
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1e-22 Score=184.89 Aligned_cols=259 Identities=20% Similarity=0.319 Sum_probs=202.8
Q ss_pred ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC--------CcceecccccccceeEEEEecCCCEEEEEeCC
Q 010470 217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT--------GSLSSTLYGCLGSVLDLAITHDNRSVIAASSS 288 (510)
Q Consensus 217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 288 (510)
...++..|...|..++|.|....|++++.||.+++|++.. -+++.++.+|.++|.|+++.+++..+++|+.|
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D 365 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID 365 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccC
Confidence 4457889999999999999999999999999999999932 24577889999999999999999999999999
Q ss_pred CeEEEEEcCCC----------CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee---cCcee
Q 010470 289 NNLYVWDVNSG----------RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF---HSNCN 355 (510)
Q Consensus 289 ~~i~iwd~~~~----------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~i~ 355 (510)
|+|+.|++... .....+.||.+.|+.+++++ ....|++++.||+++.|+.....+ .++.. +.-+.
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 99999976522 23456789999999999998 677899999999999999876665 33332 23366
Q ss_pred EEEEcCCC-CEEEEecCCCcEEEEECCCCceeeeecccc------cccEEEEEEcCCCCEEEEEecCCcEEEEEcCCcee
Q 010470 356 ALAFSMDG-QTIFSGHIDGNLRLWDIQTGKLLSEVAAHS------LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV 428 (510)
Q Consensus 356 ~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 428 (510)
++.+-... .+.++...-+.-.++++..+..+..+.... ...+.-+.++|.+.+.+++..|+.|+++|..++.+
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI 523 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence 67665433 223333333434444544444444443221 13467788999999999999999999999999999
Q ss_pred eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeeccccc
Q 010470 429 CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEH 481 (510)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 481 (510)
+.....+...+.+ +++.|+|-+|++|+.||.+++|.+....++.....|
T Consensus 524 l~s~~a~~~svts----lai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 524 LHSMVAHKDSVTS----LAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred chheeeccceecc----eeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 9888888777665 999999999999999999999999877766555444
No 161
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.1e-22 Score=181.28 Aligned_cols=293 Identities=21% Similarity=0.290 Sum_probs=232.3
Q ss_pred cceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc-ccccceeEEEEecC--CCEEEEEeCCCeEE
Q 010470 216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY-GCLGSVLDLAITHD--NRSVIAASSSNNLY 292 (510)
Q Consensus 216 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~d~~i~ 292 (510)
.....|.+|.|.|..|.|+..|..|++|+.|..|.+||+..++....+. +|...|..-.|-|. ...+++++.||.|+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 3556788999999999999999999999999999999999888766654 78888888888774 45789999999999
Q ss_pred EEEcCCC-Ce--eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec----C---ceeEEEEcCC
Q 010470 293 VWDVNSG-RV--RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH----S---NCNALAFSMD 362 (510)
Q Consensus 293 iwd~~~~-~~--~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~---~i~~i~~~~~ 362 (510)
+=.+... .+ ...+..|.++|.-++.-|.....|.+++.|+.+.-+|++.+.+...+... . ....++.+|.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 8776433 22 34456799999999999988899999999999999999987665555422 1 2578888985
Q ss_pred C-CEEEEecCCCcEEEEECCCCc------eeeeeccc-----ccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC--c--
Q 010470 363 G-QTIFSGHIDGNLRLWDIQTGK------LLSEVAAH-----SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS--L-- 426 (510)
Q Consensus 363 ~-~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~--~-- 426 (510)
. ..+++|+.|-.+++||.+.-. .+..+..+ ....|+++.|+.++.-++++..|-.|++|.-.. +
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 5 488899999999999987532 22333322 235799999999999888999999999995432 2
Q ss_pred --------eeee-EeecCCCeeecCceeE-EEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCc
Q 010470 427 --------EVCG-SLRATGNRVASNWSRS-CISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKP 496 (510)
Q Consensus 427 --------~~~~-~~~~~~~~~~~~~~~~-~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 496 (510)
..+. .+++|.+.-. +-.+ -|-|...|+++|++-|.|.||+-.+++.+..+.+...-|+|+.-+|.-..
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~T--VKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~Pv 450 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRT--VKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPV 450 (559)
T ss_pred CCCCcchhhccchhhcccccccc--cceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCch
Confidence 1111 2445444322 2223 36789999999999999999999999999999886668999999999999
Q ss_pred EEEeeCCCeEEEcC
Q 010470 497 LASADKNGVVCVWT 510 (510)
Q Consensus 497 l~s~~~dg~i~iwd 510 (510)
|+++|-|..|+||.
T Consensus 451 LAsSGid~DVKIWT 464 (559)
T KOG1334|consen 451 LASSGIDHDVKIWT 464 (559)
T ss_pred hhccCCccceeeec
Confidence 99999999999995
No 162
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=6.9e-23 Score=200.88 Aligned_cols=243 Identities=22% Similarity=0.338 Sum_probs=199.0
Q ss_pred cceEEEEEecCCCE----EEEeeCCCeEEEEeCCCC------cceecccccccceeEEEEecCCC-EEEEEeCCCeEEEE
Q 010470 226 GGCASILFEYNSAR----LISGGQDKSIKLWDTNTG------SLSSTLYGCLGSVLDLAITHDNR-SVIAASSSNNLYVW 294 (510)
Q Consensus 226 ~~v~~~~~s~~~~~----l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iw 294 (510)
...+.++|.+.|.. ||.|..||.|.+||...- ..+.+...|.+.|..+.|++... .|++|++||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 45788999987776 889999999999998652 33667789999999999999876 89999999999999
Q ss_pred EcCCCCeeEeec--CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc---eeEEEEcCCCC-EEEE
Q 010470 295 DVNSGRVRHTLT--GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN---CNALAFSMDGQ-TIFS 368 (510)
Q Consensus 295 d~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---i~~i~~~~~~~-~l~~ 368 (510)
|+...+.-..+. ...+.|.+++|+....++|++++.+|.+.|||++..+.+-.+..+.. +..+.|+|++. .+++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 998755444432 24678999999987788999999999999999998887777766654 88999999764 4555
Q ss_pred ecCCC---cEEEEECCCCc-eeeeecccccccEEEEEEcCCC-CEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCc
Q 010470 369 GHIDG---NLRLWDIQTGK-LLSEVAAHSLAAVTSISLSRSG-NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNW 443 (510)
Q Consensus 369 ~~~dg---~i~i~d~~~~~-~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 443 (510)
++.|. .|.+||+|... +++.+..|. .+|.++.|++.+ .++++++.|+.|.+|+..+++.+..+...++.+..
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~-~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fd-- 301 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQ-RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFD-- 301 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccc-cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceee--
Confidence 55443 59999998754 555565665 899999999976 89999999999999999999999999876666554
Q ss_pred eeEEEcCCCC-EEEEEcCCCeEEEEeCCCcc
Q 010470 444 SRSCISPDES-YVAAGSADGSVYIWSISKAD 473 (510)
Q Consensus 444 ~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~ 473 (510)
+.|+|... .|++.+.||.|.||.+.+..
T Consensus 302 --v~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 302 --VQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred --eeecCCCcchhhhheeccceeeeeeecCC
Confidence 88999655 78889999999999987654
No 163
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=6.9e-22 Score=170.76 Aligned_cols=238 Identities=22% Similarity=0.354 Sum_probs=180.4
Q ss_pred cccccceeEEEEecCCC--EEEEEeCCCeEEEEEcCC----------------CCeeEeecCCCCceEEEEEecCCCCEE
Q 010470 264 YGCLGSVLDLAITHDNR--SVIAASSSNNLYVWDVNS----------------GRVRHTLTGHTDKVCAVDVSKISSRHV 325 (510)
Q Consensus 264 ~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~----------------~~~~~~~~~~~~~v~~i~~~~~~~~~l 325 (510)
.+|.+.+..+.-++-++ +.++-+..|.|+||++.. .+++.++.+|...=++++|+|.....+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 35677777777776654 444446789999999852 257788899999999999999777889
Q ss_pred EEEeCCCcEEEEECCCCeEee---eeeec-CceeEEEEcCCC-CEEEEecCCCcEEEEECCCCc--eeeeecccccccEE
Q 010470 326 VSAAYDRTLKVWDLHKGYCVN---TIIFH-SNCNALAFSMDG-QTIFSGHIDGNLRLWDIQTGK--LLSEVAAHSLAAVT 398 (510)
Q Consensus 326 ~s~~~dg~i~iwd~~~~~~~~---~~~~~-~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~i~ 398 (510)
++|..-+.|++|...+|.... .+..| ..|-.++|+|.. ..|++|+.||+|+|||+|.+. .......|. +.|+
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~-sDVN 306 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHN-SDVN 306 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccC-Ccee
Confidence 999989999999998875322 12223 458999999954 578899999999999999872 222224444 8999
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEEcCC---ceeeeEeecCCCeeecCceeEEEcCC-CCEEEEEcCCCeEEEEeCCCcce
Q 010470 399 SISLSRSGNIILTSGRDNLHNLFDIRS---LEVCGSLRATGNRVASNWSRSCISPD-ESYVAAGSADGSVYIWSISKADI 474 (510)
Q Consensus 399 ~i~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~ 474 (510)
.|.|+....+|++|+.||+++|||++. ++++..|..|..++.+ +.|+|. ...|++++.|..|.+||+.-..-
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pIts----ieW~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITS----IEWHPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeE----EEeccccCceEEeccCCCcEEEEEeeccCC
Confidence 999999988999999999999999985 5667788888777665 999994 56788888999999999853211
Q ss_pred -----------ee-----ccccc--CcCEEEEEEeCCCC-cEEEeeCCCeE
Q 010470 475 -----------VR-----TLKEH--TAPVLSCSWSGLGK-PLASADKNGVV 506 (510)
Q Consensus 475 -----------~~-----~~~~~--~~~v~~~~~~~~~~-~l~s~~~dg~i 506 (510)
+. .+--| ...|..+.|++.-+ +|++.+.||.-
T Consensus 383 ~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfn 433 (440)
T KOG0302|consen 383 EEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFN 433 (440)
T ss_pred hhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccccee
Confidence 11 11124 33577889998755 78888888753
No 164
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.89 E-value=4.6e-22 Score=182.75 Aligned_cols=123 Identities=20% Similarity=0.346 Sum_probs=104.9
Q ss_pred ceeeccccccceEEEEEec-CCCEEEEeeCCCeEEEEeCCCCccee------cccccccceeEEEEecCCCEEEEEeCCC
Q 010470 217 CKHKINAHEGGCASILFEY-NSARLISGGQDKSIKLWDTNTGSLSS------TLYGCLGSVLDLAITHDNRSVIAASSSN 289 (510)
Q Consensus 217 ~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 289 (510)
.+..+.+|...|+.+.|+| +..+|++|+.|..|+||.+..|.... .+.+..-.|-++.|+|...-|+..+..|
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g 150 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHG 150 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCc
Confidence 4556889999999999999 44588999999999999997442211 1223345778999999888888888889
Q ss_pred eEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 010470 290 NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH 340 (510)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~ 340 (510)
.++|||+.+++....+.+|.+.|.+..|+. ++.++++++.|..|+|||.+
T Consensus 151 ~v~i~D~stqk~~~el~~h~d~vQSa~Wse-DG~llatscKdkqirifDPR 200 (1012)
T KOG1445|consen 151 SVYITDISTQKTAVELSGHTDKVQSADWSE-DGKLLATSCKDKQIRIFDPR 200 (1012)
T ss_pred eEEEEEcccCceeecccCCchhhhcccccc-CCceEeeecCCcceEEeCCc
Confidence 999999999999999999999999999998 89999999999999999865
No 165
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.3e-21 Score=178.61 Aligned_cols=242 Identities=15% Similarity=0.238 Sum_probs=195.4
Q ss_pred ecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 010470 261 STLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH 340 (510)
Q Consensus 261 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~ 340 (510)
..+.+|.+.|.++...|.|..|++|+.||+|+||.+.+|.++.++. ..+.|.|++|+|....-++.....+.+.|.+..
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence 3467999999999999999999999999999999999999999987 567899999999655555555445555555432
Q ss_pred CCe--------------------------------------EeeeeeecCceeEEEEcCCCCEEEEecC---CCcEEEEE
Q 010470 341 KGY--------------------------------------CVNTIIFHSNCNALAFSMDGQTIFSGHI---DGNLRLWD 379 (510)
Q Consensus 341 ~~~--------------------------------------~~~~~~~~~~i~~i~~~~~~~~l~~~~~---dg~i~i~d 379 (510)
-|. .-..+.....|+.+.|+..|.+|++... ...|.|++
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ 552 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ 552 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence 110 1122334456899999999999998654 34699999
Q ss_pred CCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEc
Q 010470 380 IQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGS 459 (510)
Q Consensus 380 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 459 (510)
+...+....|.... +.|.++.|+|...+|++++. ..|+|||+.....+..+......+. .++++|.|.-|+.|+
T Consensus 553 LSK~~sQ~PF~ksk-G~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS----~msihp~GDnli~gs 626 (733)
T KOG0650|consen 553 LSKRKSQSPFRKSK-GLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWIS----SMSIHPNGDNLILGS 626 (733)
T ss_pred cccccccCchhhcC-CceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeee----eeeecCCCCeEEEec
Confidence 98777666665554 88999999999999888865 4799999998777776655554444 489999999999999
Q ss_pred CCCeEEEEeCCCc-ceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 460 ADGSVYIWSISKA-DIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 460 ~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
.|+.+..||+.-+ ++.+++..|...+.+++|++.-+++++|+.||.+.||
T Consensus 627 ~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 9999999999764 6788899999999999999999999999999999886
No 166
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.8e-21 Score=166.28 Aligned_cols=270 Identities=17% Similarity=0.281 Sum_probs=194.6
Q ss_pred CEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEec--CCCEEEEEeCCCeEEEEEcCCCCe--eEeecCCC-Cce
Q 010470 238 ARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH--DNRSVIAASSSNNLYVWDVNSGRV--RHTLTGHT-DKV 312 (510)
Q Consensus 238 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~-~~v 312 (510)
..+|++.+.|.|++||..+++.+..+.++...+..+.|.. ....+++|+.||+|++||+++... ...+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5788999999999999999999999999999999999977 467799999999999999987653 34444555 456
Q ss_pred EEEEEecCCCCEEEEEeC----CCcEEEEECCCCeE-eeeee--ecCceeEEEEcC-CCCEEEEecCCCcEEEEECCCCc
Q 010470 313 CAVDVSKISSRHVVSAAY----DRTLKVWDLHKGYC-VNTII--FHSNCNALAFSM-DGQTIFSGHIDGNLRLWDIQTGK 384 (510)
Q Consensus 313 ~~i~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~-~~~~~--~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~ 384 (510)
.+++.+- ..+++++|.. +-.|.+||++..+. +..+. ++..|++++|+| +.+.|++|+.||.|.+||+....
T Consensus 121 ~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 6666654 5667776653 67899999998765 55543 345699999999 66789999999999999986542
Q ss_pred ---eeeeecccccccEEEEEEcCCC-CEEEEEecCCcEEEEEcCCceeeeEeecCCCee-------ecCceeEEEcC-CC
Q 010470 385 ---LLSEVAAHSLAAVTSISLSRSG-NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRV-------ASNWSRSCISP-DE 452 (510)
Q Consensus 385 ---~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~s~-~~ 452 (510)
.+.....+. +.|.++.|..++ +.|.+-+......+|++..+.....+..+.... ......-+.+| ++
T Consensus 200 EeDaL~~viN~~-sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~ 278 (376)
T KOG1188|consen 200 EEDALLHVINHG-SSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDK 278 (376)
T ss_pred chhhHHHhhccc-ceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCc
Confidence 122222222 679999999877 357788888999999998876544443321111 00111112334 44
Q ss_pred CEEEEEcC-CCeEEEEeCC---C---cceeecccc-cCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 453 SYVAAGSA-DGSVYIWSIS---K---ADIVRTLKE-HTAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 453 ~~l~~~~~-dg~i~iwd~~---~---~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
..++.++. -|...++-+. + .+.+..+.+ |..-|.++.|...+..+.|||.||.+.+|
T Consensus 279 ~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~W 343 (376)
T KOG1188|consen 279 DTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAW 343 (376)
T ss_pred ceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEE
Confidence 45444443 4555555433 2 344555666 67778899999889999999999999999
No 167
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.88 E-value=1.9e-19 Score=176.18 Aligned_cols=284 Identities=35% Similarity=0.613 Sum_probs=226.7
Q ss_pred eccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc-ceecccccc-cceeEEEE-ecCCC-EEEEEeC-CCeEEEE
Q 010470 220 KINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS-LSSTLYGCL-GSVLDLAI-THDNR-SVIAASS-SNNLYVW 294 (510)
Q Consensus 220 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~-~~v~~~~~-~~~~~-~l~~~~~-d~~i~iw 294 (510)
.+.+|...+.++.|.+.+..++.++.|+.+.+|+...+. ....+.++. ..+..+.+ ++++. +++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 567899999999999999999999999999999998886 556666544 36777777 78887 5555444 8999999
Q ss_pred EcCC-CCeeEeecCCCCceEEEEEecCCCCEEEEEeC-CCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCC-EEEEec
Q 010470 295 DVNS-GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY-DRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQ-TIFSGH 370 (510)
Q Consensus 295 d~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~-~l~~~~ 370 (510)
+... ......+..|...|.++.|+| ++..+++++. |+.+++|++..+..+..+..+ ..+.++.|+|++. .+++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 9988 778888999999999999999 6668888875 999999999988888888764 5699999999998 555558
Q ss_pred CCCcEEEEECCCCceee-eecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCcee-eeEeecCCCeeecCceeEEE
Q 010470 371 IDGNLRLWDIQTGKLLS-EVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV-CGSLRATGNRVASNWSRSCI 448 (510)
Q Consensus 371 ~dg~i~i~d~~~~~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~ 448 (510)
.|+.|.+||...+.... .+..+. ... ...|+|++.++++++.|+.+++|+++.... ...+..+ ...+..+.|
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~ 292 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSGHS-DSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH----SSSVLSVAF 292 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCCCC-cce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC----CccEEEEEE
Confidence 99999999998777777 466654 333 238999999999999999999999987654 3333233 233445789
Q ss_pred cCCCCEEEEEcCCCeEEEEeCCCcceeeccc--ccCcCEEEEEEeCCCCcEEEe-eCCCeEEEcC
Q 010470 449 SPDESYVAAGSADGSVYIWSISKADIVRTLK--EHTAPVLSCSWSGLGKPLASA-DKNGVVCVWT 510 (510)
Q Consensus 449 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~-~~dg~i~iwd 510 (510)
+|++..+++++.|+.+.+|+..+........ .|...+..+.|.+++..++.+ ..|+.+.+|+
T Consensus 293 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 293 SPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred CCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 9988888889889999999988877666665 788789999994332455555 6788888885
No 168
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.88 E-value=1.2e-20 Score=157.60 Aligned_cols=256 Identities=21% Similarity=0.354 Sum_probs=193.1
Q ss_pred CCeEEEEeCCCCc--c-eecccccccceeEEEEecCCCEEEEEeCC--------CeEEEEEcCCCC---------eeEee
Q 010470 246 DKSIKLWDTNTGS--L-SSTLYGCLGSVLDLAITHDNRSVIAASSS--------NNLYVWDVNSGR---------VRHTL 305 (510)
Q Consensus 246 dg~i~iwd~~~~~--~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~---------~~~~~ 305 (510)
|+.|.+.+++.+. . ...+..|.+.|+.++-+|-...+++...+ ..+.||.+.... ++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 6777777765432 2 34566788999999999987766655432 257899886432 23333
Q ss_pred c-CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE-eeeeeec------CceeEEEEcC--CCCEEEEecCCCcE
Q 010470 306 T-GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC-VNTIIFH------SNCNALAFSM--DGQTIFSGHIDGNL 375 (510)
Q Consensus 306 ~-~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~------~~i~~i~~~~--~~~~l~~~~~dg~i 375 (510)
. .+-+.|.|+.|.| ++..+++-. |..|.+|++..+.. +..+... ...++-+|+| +|+.+++.+ |+++
T Consensus 119 dteavg~i~cvew~P-ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl 195 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEP-NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTL 195 (370)
T ss_pred CHHHhCceeeEEEcC-CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcE
Confidence 3 4556899999999 777777766 89999999987765 3333222 2377889998 788777655 7899
Q ss_pred EEEECCCCceeeeecccccccEEEEEEcCCCC-EEEEEecCCcEEEEEcCC-ceeeeEeecCCCeeecCceeEEEcC-CC
Q 010470 376 RLWDIQTGKLLSEVAAHSLAAVTSISLSRSGN-IILTSGRDNLHNLFDIRS-LEVCGSLRATGNRVASNWSRSCISP-DE 452 (510)
Q Consensus 376 ~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~-~~ 452 (510)
..||+++.+....+...+...+..+.|+|+.. +|++|+.||.|+|||.++ ..++..+..|...+-. +.|+| ..
T Consensus 196 ~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~----VRfn~~hd 271 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWA----VRFNPEHD 271 (370)
T ss_pred EEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEE----EEecCccc
Confidence 99999999999888887768899999999866 678889999999999986 4566777777665544 88888 46
Q ss_pred CEEEEEcCCCeEEEEeCCCc-----------------------------ceeecccccCcCEEEEEEeCCCCc-EEEeeC
Q 010470 453 SYVAAGSADGSVYIWSISKA-----------------------------DIVRTLKEHTAPVLSCSWSGLGKP-LASADK 502 (510)
Q Consensus 453 ~~l~~~~~dg~i~iwd~~~~-----------------------------~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~ 502 (510)
++|.+|+.|..|.+|...+- ..+.++..|...|.+++||.-.++ +++-+.
T Consensus 272 qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSY 351 (370)
T KOG1007|consen 272 QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSY 351 (370)
T ss_pred eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEecc
Confidence 78899999999999965321 123356679999999999987774 677899
Q ss_pred CCeEEE
Q 010470 503 NGVVCV 508 (510)
Q Consensus 503 dg~i~i 508 (510)
||.+.|
T Consensus 352 DGRviI 357 (370)
T KOG1007|consen 352 DGRVII 357 (370)
T ss_pred CceEEe
Confidence 999876
No 169
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.2e-21 Score=175.48 Aligned_cols=209 Identities=19% Similarity=0.295 Sum_probs=162.9
Q ss_pred ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc-ccccceeEEEEec--CCCEEEEEeCCCeEEE
Q 010470 217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY-GCLGSVLDLAITH--DNRSVIAASSSNNLYV 293 (510)
Q Consensus 217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i 293 (510)
....+.||+|.|+|+.|+.+|.+|++|+.|-.+.|||.-..+++..+. +|.+.|.++.|-| +++.+++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 456789999999999999999999999999999999998888777664 8999999999988 4678899999999999
Q ss_pred EEcCCC----------CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe-Eeeeeeec----------C
Q 010470 294 WDVNSG----------RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY-CVNTIIFH----------S 352 (510)
Q Consensus 294 wd~~~~----------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~----------~ 352 (510)
||+... .....+..|...|..++..|...+.+.+++.||+|+-+|++... +......+ -
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 999842 24455678999999999999777999999999999999998632 11111111 2
Q ss_pred ceeEEEEcC-CCCEEEEecCCCcEEEEECCCC--------c----------eeeeeccccc-----------ccEEEEEE
Q 010470 353 NCNALAFSM-DGQTIFSGHIDGNLRLWDIQTG--------K----------LLSEVAAHSL-----------AAVTSISL 402 (510)
Q Consensus 353 ~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~--------~----------~~~~~~~~~~-----------~~i~~i~~ 402 (510)
...|+.++| +..+|++|+.|-..++||.+.. . ++..+...+. ..++-+.|
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf 281 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF 281 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence 367899999 4567889999999999995321 1 1222221110 12567889
Q ss_pred cCCCCEEEEEecCCcEEEEEcCC
Q 010470 403 SRSGNIILTSGRDNLHNLFDIRS 425 (510)
Q Consensus 403 ~~~~~~l~~~~~d~~i~i~d~~~ 425 (510)
+|+|.-|++.-....|++||+..
T Consensus 282 npNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 282 NPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred CCCCcEEEEeeCCeEEEEEeecC
Confidence 99999888887777889888753
No 170
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.88 E-value=1.1e-21 Score=166.65 Aligned_cols=243 Identities=21% Similarity=0.342 Sum_probs=186.1
Q ss_pred ccccceEEEEEecC----CCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCC-CEEEEEeCCCeEEEEEcC
Q 010470 223 AHEGGCASILFEYN----SARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDN-RSVIAASSSNNLYVWDVN 297 (510)
Q Consensus 223 ~h~~~v~~~~~s~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~ 297 (510)
.|......++|+.+ ..++|.||.-|.|+|.|+.++++...+.+|.+.|+.+.+.|+. +++++++.|..|++|++.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 36667788888764 3478999999999999999999999999999999999999986 678899999999999999
Q ss_pred CCCeeEee---cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee-------------------------
Q 010470 298 SGRVRHTL---TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII------------------------- 349 (510)
Q Consensus 298 ~~~~~~~~---~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------------------- 349 (510)
+..++..+ .+|.+.|.++.|++ ++.+|++++.|.++++|++...+....+.
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fs 245 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFS 245 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccc
Confidence 99998887 46999999999999 88899999999999999997332111000
Q ss_pred ---ec-CceeEEEEcCCCCEEEEecCCCcEEEEECC-CCce-------------eeeecccccccEEEE--EEcCCCCEE
Q 010470 350 ---FH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQ-TGKL-------------LSEVAAHSLAAVTSI--SLSRSGNII 409 (510)
Q Consensus 350 ---~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~-~~~~-------------~~~~~~~~~~~i~~i--~~~~~~~~l 409 (510)
.| ..|.|+.|. |+++++-+.++.|..|... -++. +..+.... ..+.-+ +|+|-++.|
T Consensus 246 t~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~-c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 246 TTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPM-CDIWFIRFAFDPWQKML 322 (385)
T ss_pred ccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCc-cceEEEEEeecHHHHHH
Confidence 00 113444443 6889998888999999872 1221 12222222 334444 556778999
Q ss_pred EEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470 410 LTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI 469 (510)
Q Consensus 410 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~ 469 (510)
+.|...|.+.+||++..++..............+...+|+.||.+|+..++|++|.-||.
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 999999999999999877643333333333345666899999999999999999999985
No 171
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.88 E-value=1e-19 Score=170.58 Aligned_cols=267 Identities=16% Similarity=0.225 Sum_probs=179.3
Q ss_pred EEEeeCCCeEEEEeCCC-Cc--ceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcC-CCCe--eEeecCCCCce
Q 010470 240 LISGGQDKSIKLWDTNT-GS--LSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVN-SGRV--RHTLTGHTDKV 312 (510)
Q Consensus 240 l~s~~~dg~i~iwd~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~-~~~~--~~~~~~~~~~v 312 (510)
+++...++.|.+|++.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|++. ++.. ..... .....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p 82 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP 82 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence 34446789999999964 33 334443 345677899999999988775 57889999997 3432 22222 33456
Q ss_pred EEEEEecCCCCEEEEEe-CCCcEEEEECCC-Ce---EeeeeeecCceeEEEEcCCCCEEEE-ecCCCcEEEEECCCCcee
Q 010470 313 CAVDVSKISSRHVVSAA-YDRTLKVWDLHK-GY---CVNTIIFHSNCNALAFSMDGQTIFS-GHIDGNLRLWDIQTGKLL 386 (510)
Q Consensus 313 ~~i~~~~~~~~~l~s~~-~dg~i~iwd~~~-~~---~~~~~~~~~~i~~i~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~ 386 (510)
..+.++| +++++++++ .++.|.+|++.+ +. .+..+.....+.+++++|+|+++++ ...++.|.+||+.+...+
T Consensus 83 ~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l 161 (330)
T PRK11028 83 THISTDH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL 161 (330)
T ss_pred eEEEECC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence 7899999 677666655 489999999964 32 2333333345788999999998865 456689999999763322
Q ss_pred e-----eecccccccEEEEEEcCCCCEEEEEec-CCcEEEEEcCC--c--eeeeEeecCCCe--eecCceeEEEcCCCCE
Q 010470 387 S-----EVAAHSLAAVTSISLSRSGNIILTSGR-DNLHNLFDIRS--L--EVCGSLRATGNR--VASNWSRSCISPDESY 454 (510)
Q Consensus 387 ~-----~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~~i~i~d~~~--~--~~~~~~~~~~~~--~~~~~~~~~~s~~~~~ 454 (510)
. .........+..+.|+|+|+++++++. ++.|.+|++.. + +.+..+...... .......+.++|+|++
T Consensus 162 ~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 162 VAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred cccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 1 111122256788999999999988876 89999999973 2 233333221111 1111224789999999
Q ss_pred EEEEcC-CCeEEEEeCCCcce----eecccccCcCEEEEEEeCCCCcEEEeeC-CCeEEEcC
Q 010470 455 VAAGSA-DGSVYIWSISKADI----VRTLKEHTAPVLSCSWSGLGKPLASADK-NGVVCVWT 510 (510)
Q Consensus 455 l~~~~~-dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd 510 (510)
++++.. ++.|.+|++..... +...... .....+.|+|+|++|++++. ++.|.+|+
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 998854 68999999865432 2222211 24568899999999887765 88999983
No 172
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.88 E-value=9.2e-21 Score=164.79 Aligned_cols=208 Identities=24% Similarity=0.328 Sum_probs=169.8
Q ss_pred cccccccceeEEEEecCC-CEEEEEeCCCeEEEEEcCCC-------CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCc
Q 010470 262 TLYGCLGSVLDLAITHDN-RSVIAASSSNNLYVWDVNSG-------RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRT 333 (510)
Q Consensus 262 ~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~ 333 (510)
.+.+|.++|..++|+|.+ ..|++||.|.+|.||.+..+ +++..+.+|...|.-+.|+|.-.+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 456999999999999965 56778889999999998754 3567788999999999999988999999999999
Q ss_pred EEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEe
Q 010470 334 LKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG 413 (510)
Q Consensus 334 i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 413 (510)
|.+||+.+|..+-++.++.-|.+++|+.||..|++.+.|..|+|||.++++.+..-..|.......+.|-.+|.++-+|.
T Consensus 156 v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGf 235 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGF 235 (472)
T ss_pred EEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeecc
Confidence 99999999999888886677999999999999999999999999999999999988777766777788888898554443
Q ss_pred ---cCCcEEEEEcCCceee---eEeecCCCeeecCceeEEEcCCCCEEEE-EcCCCeEEEEeCCCcce
Q 010470 414 ---RDNLHNLFDIRSLEVC---GSLRATGNRVASNWSRSCISPDESYVAA-GSADGSVYIWSISKADI 474 (510)
Q Consensus 414 ---~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~ 474 (510)
.+..+-+||..+.... ..+....+... .-+.+|...|+. |-.|+.|+.|.+.+..+
T Consensus 236 sr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~-----PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 236 SRMSERQIALWDPNNLEEPIALQELDTSNGVLL-----PFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred ccccccceeccCcccccCcceeEEeccCCceEE-----eeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 4568999998764432 22323322222 457888887664 55699999999887653
No 173
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.88 E-value=7.3e-19 Score=172.09 Aligned_cols=287 Identities=33% Similarity=0.578 Sum_probs=228.1
Q ss_pred ccceeeccccccceEEEEEecCCCEEEEeeC-CCeEEEEeCCCCcceecccccccceeEEEEecCCC-EEEEEeCCCeEE
Q 010470 215 STCKHKINAHEGGCASILFEYNSARLISGGQ-DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR-SVIAASSSNNLY 292 (510)
Q Consensus 215 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~ 292 (510)
......+.+|...|.+++|+|++..+++++. |+.+++|+...+..+..+.+|...|.+++|+|++. .+++++.|+.|.
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 224 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224 (466)
T ss_pred CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence 4567788999999999999999999999886 99999999999888888889999999999999998 555558999999
Q ss_pred EEEcCCCCeeE-eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE-eeeeee-cCceeEEEEcCCCCEEEEe
Q 010470 293 VWDVNSGRVRH-TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC-VNTIIF-HSNCNALAFSMDGQTIFSG 369 (510)
Q Consensus 293 iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~-~~~i~~i~~~~~~~~l~~~ 369 (510)
+||...+.... .+.+|...+ ...|+| ++..+++++.|+.+++||+..... ...+.. ...+.++.|.|++..++++
T Consensus 225 ~wd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 302 (466)
T COG2319 225 LWDLSTGKLLRSTLSGHSDSV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302 (466)
T ss_pred EEECCCCcEEeeecCCCCcce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEe
Confidence 99988788777 688888875 447888 557888999999999999986664 444423 3568999999988888888
Q ss_pred cCCCcEEEEECCCCceeeeec--ccccccEEEEEEcCCCCEEEEE-ecCCcEEEEEcCCceeeeEeecCCCeeecCceeE
Q 010470 370 HIDGNLRLWDIQTGKLLSEVA--AHSLAAVTSISLSRSGNIILTS-GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRS 446 (510)
Q Consensus 370 ~~dg~i~i~d~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 446 (510)
+.|+.+.+||..+........ .+. ..+..+.|.+++..++.+ ..|+.+.+|+............... ...+
T Consensus 303 ~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 376 (466)
T COG2319 303 SSDGTVRLWDLETGKLLSSLTLKGHE-GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-----VLSV 376 (466)
T ss_pred eCCCcEEEEEcCCCceEEEeeecccC-CceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-----EEEE
Confidence 888899999998887666665 443 468899984333555555 6788999999987762222222221 3347
Q ss_pred EEcCCCCEEEE-EcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 447 CISPDESYVAA-GSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 447 ~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
.+++ ...+.. +..++.+.+|+............+...+....+++++..+++++.++.+.+|+
T Consensus 377 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 377 SFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440 (466)
T ss_pred EECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence 7777 544444 68899999999998887776665437889999999999999999999999985
No 174
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.88 E-value=4.3e-19 Score=164.40 Aligned_cols=226 Identities=15% Similarity=0.276 Sum_probs=169.8
Q ss_pred CCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceec----------c
Q 010470 194 VDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSST----------L 263 (510)
Q Consensus 194 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~----------~ 263 (510)
+||.-.+-..+...+..+........+++||.+.|.|++|+.||+.+++|+.|..|.+|+..-.-.++. +
T Consensus 22 PDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsF 101 (1081)
T KOG1538|consen 22 PDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSF 101 (1081)
T ss_pred CCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeec
Confidence 344333333333333344445678899999999999999999999999999999999998642111100 0
Q ss_pred ---------------------------cccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee---cCCCCceE
Q 010470 264 ---------------------------YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL---TGHTDKVC 313 (510)
Q Consensus 264 ---------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~ 313 (510)
......|.+++|..||.+++.|-.+|+|.+-+ .+++....+ .+.+.+|+
T Consensus 102 NP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRN-k~gEek~~I~Rpgg~Nspiw 180 (1081)
T KOG1538|consen 102 NPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRN-KNGEEKVKIERPGGSNSPIW 180 (1081)
T ss_pred CchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeec-CCCCcceEEeCCCCCCCCce
Confidence 01123567778888999999999999999986 445443333 35778999
Q ss_pred EEEEecCC----CCEEEEEeCCCcEEEEECCCCeEee-eeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeee
Q 010470 314 AVDVSKIS----SRHVVSAAYDRTLKVWDLHKGYCVN-TIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSE 388 (510)
Q Consensus 314 ~i~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 388 (510)
+++|+|.. ...+++.....++.+|.+. |+.+. .-...-.+.|+.+.|+|.+++.|+.|+.+.+|. +.|-.+.+
T Consensus 181 si~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGT 258 (1081)
T KOG1538|consen 181 SICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGT 258 (1081)
T ss_pred EEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEee
Confidence 99999953 3567788888888888884 55444 333445688999999999999999999999997 67777777
Q ss_pred ecccccccEEEEEEcCCCCEEEEEecCCcEEEEEc
Q 010470 389 VAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDI 423 (510)
Q Consensus 389 ~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~ 423 (510)
+.... ..|..+...|++++++.|+.||+|..|++
T Consensus 259 vg~~D-~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 259 VGEQD-SWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred ccccc-eeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 76654 89999999999999999999999987765
No 175
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.87 E-value=2.4e-20 Score=158.13 Aligned_cols=236 Identities=18% Similarity=0.276 Sum_probs=183.1
Q ss_pred eeEEEEecCCCEEEEEeCCCeEEEEEcCCCC------------eeEeec-CCCCceEEEEEec------CCCCEEEEEeC
Q 010470 270 VLDLAITHDNRSVIAASSSNNLYVWDVNSGR------------VRHTLT-GHTDKVCAVDVSK------ISSRHVVSAAY 330 (510)
Q Consensus 270 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------------~~~~~~-~~~~~v~~i~~~~------~~~~~l~s~~~ 330 (510)
...+.|+|||..|++.+.|..+.+|++...- ....+. .....|...+|.+ .+.+++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 3568999999999999999999999985311 011111 1335577777752 16788999999
Q ss_pred CCcEEEEECCCCeEeeeeeec------CceeEEEEcCCCCEEEEecCCCcEEEEEC-CCCceeeeec------ccccccE
Q 010470 331 DRTLKVWDLHKGYCVNTIIFH------SNCNALAFSMDGQTIFSGHIDGNLRLWDI-QTGKLLSEVA------AHSLAAV 397 (510)
Q Consensus 331 dg~i~iwd~~~~~~~~~~~~~------~~i~~i~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~------~~~~~~i 397 (510)
+.-|++||.-+|+....+..- ....+++|+|||..|++|.. ..|++||+ |.|....... ....+.+
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 999999999999887776543 23679999999999998875 68999999 5554322111 1123678
Q ss_pred EEEEEcCCCC-EEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC-CCeEEEEeCCC-cce
Q 010470 398 TSISLSRSGN-IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA-DGSVYIWSISK-ADI 474 (510)
Q Consensus 398 ~~i~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~-~~~ 474 (510)
.+++|+|-.. .+++++....+-||.-....++..+.++.+.+.. ++|.++|+.|++|.. |-.|.+||++. +.+
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvTh----L~~~edGn~lfsGaRk~dkIl~WDiR~~~~p 286 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTH----LQWCEDGNKLFSGARKDDKILCWDIRYSRDP 286 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeee----EEeccCcCeecccccCCCeEEEEeehhccch
Confidence 9999999655 8999999999999999999999888888777665 999999999999886 67899999986 567
Q ss_pred eecccccCc-CEEE--EEEeCCCCcEEEeeCCCeEEEcC
Q 010470 475 VRTLKEHTA-PVLS--CSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 475 ~~~~~~~~~-~v~~--~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+..+..|.. .=.. +...|+|++|++|+.||.|++||
T Consensus 287 v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwd 325 (406)
T KOG2919|consen 287 VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWD 325 (406)
T ss_pred hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEe
Confidence 788877765 2233 45568999999999999999997
No 176
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=2.5e-21 Score=175.93 Aligned_cols=247 Identities=21% Similarity=0.281 Sum_probs=191.1
Q ss_pred cccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC--------CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCc
Q 010470 262 TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS--------GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRT 333 (510)
Q Consensus 262 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--------~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~ 333 (510)
++..|...|..+.|.|....|++++.||.+.+|++.. -+++.+|.+|.++|.|+++.+ ++..+++|+.||+
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccCce
Confidence 4567888999999999999999999999999999932 247889999999999999988 8999999999999
Q ss_pred EEEEECCCC------e----EeeeeeecC-ceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccc-cccEEEEE
Q 010470 334 LKVWDLHKG------Y----CVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS-LAAVTSIS 401 (510)
Q Consensus 334 i~iwd~~~~------~----~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~i~~i~ 401 (510)
|+.|++... . ....+.++. .+..+++++....|++++.||+++.|+.....+ ..+.... .+...++.
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVD 446 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEe
Confidence 999966421 1 223334443 477999999999999999999999999876655 3333221 14566666
Q ss_pred EcCCC-CEEEEEecCCcEEEEEcCCceeeeEeecCCCeee---cCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeec
Q 010470 402 LSRSG-NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVA---SNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRT 477 (510)
Q Consensus 402 ~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 477 (510)
+-... .+.++...-+.-.+++......+..+.....+.. ..+..+...|.+.+.+++..|+.|+++|..+++++..
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s 526 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS 526 (577)
T ss_pred eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh
Confidence 65443 3344444444444555554444444443322222 4456678899999999999999999999999999999
Q ss_pred ccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 478 LKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 478 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
...|...++++++.|+|.+|++++.||.+.+|.
T Consensus 527 ~~a~~~svtslai~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 527 MVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred eeeccceecceeecCCCceEEeecCCceeehhh
Confidence 999999999999999999999999999999994
No 177
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=7.2e-20 Score=177.81 Aligned_cols=284 Identities=21% Similarity=0.339 Sum_probs=206.4
Q ss_pred ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc---ccceeEEEEec--CCCEEEEEeCCCeEEEEEcC
Q 010470 223 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC---LGSVLDLAITH--DNRSVIAASSSNNLYVWDVN 297 (510)
Q Consensus 223 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~ 297 (510)
+..++...+.|+|-...++++...-.|+|||.+.++....+..+ ...|+.+.+-. |..++++|+.||.|+||+--
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 33345677889998889999988889999999999887776643 45788888854 45689999999999999753
Q ss_pred CC-----CeeEeecC-------CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc--eeEEEEcC-C
Q 010470 298 SG-----RVRHTLTG-------HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN--CNALAFSM-D 362 (510)
Q Consensus 298 ~~-----~~~~~~~~-------~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--i~~i~~~~-~ 362 (510)
.. +.+..+.+ ..+.-.-+.|.. ...+|+++|.-..|+|||.....+...+...+. ++++.-+- .
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ-~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQ-QSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH 1220 (1387)
T ss_pred ccccCCceeEEeeccccccCccCCCCCeeeehhh-hCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC
Confidence 22 22322221 112224466766 445555555588999999999888888876654 56655443 5
Q ss_pred CCEEEEecCCCcEEEEECCCCc---eeeeeccccccc--EEEEEEcCCCCE-EEEEecCCcEEEEEcCCceeeeEeecCC
Q 010470 363 GQTIFSGHIDGNLRLWDIQTGK---LLSEVAAHSLAA--VTSISLSRSGNI-ILTSGRDNLHNLFDIRSLEVCGSLRATG 436 (510)
Q Consensus 363 ~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~--i~~i~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 436 (510)
|+.|++|..||.|++||.+... .+.....|. .. |..+.+.+.|-- |++|+.+|.|++||++.......+....
T Consensus 1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~-~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHN-DVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred CceEEEeecCCceEEeecccCCccccceeecccC-CcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence 7999999999999999998654 344555554 44 889999987765 9999999999999999752222222111
Q ss_pred Cee-ecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccc-------cCcCEEEEEEeCCCCcEEEeeCCCeEEE
Q 010470 437 NRV-ASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE-------HTAPVLSCSWSGLGKPLASADKNGVVCV 508 (510)
Q Consensus 437 ~~~-~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~s~~~dg~i~i 508 (510)
..- .+..+++.++++...+|+|+. +.|.||++. |+.+..++. ..+++.+++|+|..-.|++|+.|..|.|
T Consensus 1300 ~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~i 1377 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSI 1377 (1387)
T ss_pred ccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEE
Confidence 111 113566889999999999998 899999975 444444332 3456899999999989999999999999
Q ss_pred cC
Q 010470 509 WT 510 (510)
Q Consensus 509 wd 510 (510)
|.
T Consensus 1378 Ys 1379 (1387)
T KOG1517|consen 1378 YS 1379 (1387)
T ss_pred ee
Confidence 84
No 178
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.85 E-value=2.3e-19 Score=177.02 Aligned_cols=295 Identities=14% Similarity=0.186 Sum_probs=211.5
Q ss_pred cceeeccccccceEEEEEecC-CCEEEEeeCCCeEEEEeCCCC-------cceecccccccceeEEEEecCCCEEEEEeC
Q 010470 216 TCKHKINAHEGGCASILFEYN-SARLISGGQDKSIKLWDTNTG-------SLSSTLYGCLGSVLDLAITHDNRSVIAASS 287 (510)
Q Consensus 216 ~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 287 (510)
..+..+..|.+.|..++.++. +.+|+|||.||+|++|+...- +...++....+.+.++.+.+.+..+++++.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 355667788999999988765 599999999999999998531 122333445778999999999999999999
Q ss_pred CCeEEEEEcCCC--C-----eeEeecCC--CCceEEEEEecCCCC-EEEEEeCCCcEEEEECCCCeEeeeeee---cCce
Q 010470 288 SNNLYVWDVNSG--R-----VRHTLTGH--TDKVCAVDVSKISSR-HVVSAAYDRTLKVWDLHKGYCVNTIIF---HSNC 354 (510)
Q Consensus 288 d~~i~iwd~~~~--~-----~~~~~~~~--~~~v~~i~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~i 354 (510)
||.|.+.+++.. . .......+ ...|..-++...... .++.+...+.|..||++.......... ++-+
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence 999999998752 1 11112222 222333344333334 788888889999999987766655543 4569
Q ss_pred eEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCC---CEEEEEe--cCCcEEEEEcCCceee
Q 010470 355 NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSG---NIILTSG--RDNLHNLFDIRSLEVC 429 (510)
Q Consensus 355 ~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~---~~l~~~~--~d~~i~i~d~~~~~~~ 429 (510)
++++.+|.++++++|+..|.+.+||+|-+.++..+..+...++..+..+|-. ...++++ ..+.|.+|++.++...
T Consensus 1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ 1278 (1431)
T ss_pred eEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcce
Confidence 9999999999999999999999999999999998887776888888877643 3444443 5678999999988766
Q ss_pred eEeecCCC-e--------------eecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccee-------------------
Q 010470 430 GSLRATGN-R--------------VASNWSRSCISPDESYVAAGSADGSVYIWSISKADIV------------------- 475 (510)
Q Consensus 430 ~~~~~~~~-~--------------~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~------------------- 475 (510)
..+..... + ........++...+.++.+|+.|+.|+.||.......
T Consensus 1279 ~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~ 1358 (1431)
T KOG1240|consen 1279 TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYD 1358 (1431)
T ss_pred EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhcc
Confidence 66554411 1 1111112334445668889999999999997532110
Q ss_pred ----------e-------------------cc--------cccCcCEEEEEEeCCC-CcEEEeeCCCeEEEcC
Q 010470 476 ----------R-------------------TL--------KEHTAPVLSCSWSGLG-KPLASADKNGVVCVWT 510 (510)
Q Consensus 476 ----------~-------------------~~--------~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd 510 (510)
. .+ ..|..+|+++++.... .+|++++.||.|+||-
T Consensus 1359 ~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1359 LSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 0 00 1377788888876544 4889999999999994
No 179
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.85 E-value=4.4e-18 Score=147.32 Aligned_cols=236 Identities=17% Similarity=0.204 Sum_probs=183.5
Q ss_pred ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCC--CeEEEEEcCCCCee
Q 010470 225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS--NNLYVWDVNSGRVR 302 (510)
Q Consensus 225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~ 302 (510)
...+..+.|+.+...|..|+.|| .++|+.+..............|..+-|+ ..+++..+.+ ..+++++...+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceE
Confidence 34577778999999999999988 6788776554433333334455556665 4556665543 35899999888888
Q ss_pred EeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-C---ceeEEEEcCCCCEEEE--ecCCCcEE
Q 010470 303 HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-S---NCNALAFSMDGQTIFS--GHIDGNLR 376 (510)
Q Consensus 303 ~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~---~i~~i~~~~~~~~l~~--~~~dg~i~ 376 (510)
+.+. ...+|.++.++. +.++++-.+ .|+|||+++.+.+.++... . .+.++.+++.+.+++. ....|.|.
T Consensus 82 Ce~~-fpt~IL~VrmNr---~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred EEEe-cCCceEEEEEcc---ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 7776 567899998864 555555543 4999999999998888654 2 2555556666678884 34578999
Q ss_pred EEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCc-EEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEE
Q 010470 377 LWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNL-HNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 455 (510)
Q Consensus 377 i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 455 (510)
+||..+-+++..+..|. +++.+++|+++|.+|++++..|+ |+||.+.+++.+..|+.... ...+.+++|+|++++|
T Consensus 157 l~d~~nl~~v~~I~aH~-~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 157 LFDTINLQPVNTINAHK-GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--PVSIYSLSFSPDSQFL 233 (391)
T ss_pred EEEcccceeeeEEEecC-CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce--eeEEEEEEECCCCCeE
Confidence 99999999999999887 99999999999999999999985 79999999999999876555 4456779999999999
Q ss_pred EEEcCCCeEEEEeCCC
Q 010470 456 AAGSADGSVYIWSISK 471 (510)
Q Consensus 456 ~~~~~dg~i~iwd~~~ 471 (510)
++.+..++|+||.+..
T Consensus 234 ~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 234 AASSNTETVHIFKLEK 249 (391)
T ss_pred EEecCCCeEEEEEecc
Confidence 9999999999998753
No 180
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=1e-19 Score=158.40 Aligned_cols=206 Identities=19% Similarity=0.298 Sum_probs=166.6
Q ss_pred eccccccceEEEEEec-CCCEEEEeeCCCeEEEEeCCCC-------cceecccccccceeEEEEecCC-CEEEEEeCCCe
Q 010470 220 KINAHEGGCASILFEY-NSARLISGGQDKSIKLWDTNTG-------SLSSTLYGCLGSVLDLAITHDN-RSVIAASSSNN 290 (510)
Q Consensus 220 ~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~ 290 (510)
.+.||+++|..++|+| +...||+||.|.+|.||.+..+ .++..+.+|...|--+.|+|.. +.|++++.|+.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4679999999999999 4567899999999999998654 3356678999999999999964 57889999999
Q ss_pred EEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc--eeEEEEcCCCCEEEE
Q 010470 291 LYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFS 368 (510)
Q Consensus 291 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~ 368 (510)
|.+||+.+|+.+.++. |.+.|+++.|+. ++.++++.+.|..|+|||.++++.+..-..|.. ...+.|..+|..+-+
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tT 233 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTT 233 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeee
Confidence 9999999999888888 999999999998 899999999999999999999999888755533 455667778885555
Q ss_pred ec---CCCcEEEEECCCCce-eeeecccccccEEEEEEcCCCCEEEEE-ecCCcEEEEEcCCce
Q 010470 369 GH---IDGNLRLWDIQTGKL-LSEVAAHSLAAVTSISLSRSGNIILTS-GRDNLHNLFDIRSLE 427 (510)
Q Consensus 369 ~~---~dg~i~i~d~~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~i~d~~~~~ 427 (510)
|. .+..+.+||..+... +..........|.---|+++.+.++.+ -.|+.|+.|.+..-.
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 53 467899999876432 222222333677777889998877655 478999999987644
No 181
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=5.4e-19 Score=144.14 Aligned_cols=232 Identities=15% Similarity=0.237 Sum_probs=178.4
Q ss_pred ceeEEEEecCCCEEEEEeCCCeEEEEEcCC---------C-CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEE
Q 010470 269 SVLDLAITHDNRSVIAASSSNNLYVWDVNS---------G-RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD 338 (510)
Q Consensus 269 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---------~-~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd 338 (510)
.|..-+|+|.+++|++|+.+|.|.++.+.+ + ..+....+|.++++.++|+ ..++++|+ ||.|+-|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeecc-CceEEEee
Confidence 455668999999999999999999998863 2 2455668999999999996 46777877 69999997
Q ss_pred CCCCeE------eeeee--------ecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcC
Q 010470 339 LHKGYC------VNTII--------FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSR 404 (510)
Q Consensus 339 ~~~~~~------~~~~~--------~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~ 404 (510)
.+.... +.... .-..|+++.+.|..+.++.++.|+.++.||+++|+..+.+.+|. ..+.++.--.
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHt-DYvH~vv~R~ 166 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHT-DYVHSVVGRN 166 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCc-ceeeeeeecc
Confidence 653211 11111 11348999999988888877799999999999999999999998 8999998866
Q ss_pred CCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeec--Ccee--EEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccc
Q 010470 405 SGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVAS--NWSR--SCISPDESYVAAGSADGSVYIWSISKADIVRTLKE 480 (510)
Q Consensus 405 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~--~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 480 (510)
....+++|+.||++++||+++.+.+..+....++... .+.. .++.-+..++++|+.- .+.+|++.+.++...++
T Consensus 167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp-~lslwhLrsse~t~vfp- 244 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP-KLSLWHLRSSESTCVFP- 244 (325)
T ss_pred cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC-ceeEEeccCCCceEEEe-
Confidence 6778999999999999999999998888655443322 1222 5667788899988855 59999999998887776
Q ss_pred cCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 481 HTAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 481 ~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
-..+|..+.|..| .++++|..+.|.-|
T Consensus 245 ipa~v~~v~F~~d--~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 245 IPARVHLVDFVDD--CVLIGGEGNHVQSY 271 (325)
T ss_pred cccceeEeeeecc--eEEEeccccceeee
Confidence 3456788888654 56677655555544
No 182
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=4.7e-18 Score=138.71 Aligned_cols=231 Identities=20% Similarity=0.251 Sum_probs=173.1
Q ss_pred chHHhhhhcCCceEEecccccccccccCCCcc-ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc----
Q 010470 185 GLEKLAKQQVDGVVRRSEEGAEFFAESTVPST-CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL---- 259 (510)
Q Consensus 185 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~---- 259 (510)
....++.+..+|.+.+.............|.+ .+..+++|.++|+.++|. ..+|++|+ ||.|+-|.......
T Consensus 21 ~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~ 97 (325)
T KOG0649|consen 21 SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLAT 97 (325)
T ss_pred cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccc
Confidence 33446677788888776644433333333333 445568999999999998 34777777 59999998753221
Q ss_pred --eec--cccc-----ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeC
Q 010470 260 --SST--LYGC-----LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY 330 (510)
Q Consensus 260 --~~~--~~~~-----~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~ 330 (510)
+.. ..-| -..|+++...|..+.++.++.|+.++-||+++|+....+.+|++.|.++.--. ....+++|+.
T Consensus 98 K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~-~~~qilsG~E 176 (325)
T KOG0649|consen 98 KRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN-ANGQILSGAE 176 (325)
T ss_pred hhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc-cCcceeecCC
Confidence 111 1112 24688999999988888888999999999999999999999999999998754 5678999999
Q ss_pred CCcEEEEECCCCeEeeeeeecCce---------eEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEE
Q 010470 331 DRTLKVWDLHKGYCVNTIIFHSNC---------NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSIS 401 (510)
Q Consensus 331 dg~i~iwd~~~~~~~~~~~~~~~i---------~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~ 401 (510)
||++++||.++++++..+...... .-.++.-+..++++|+. ..+.+|.+++.++...+..+ .++..+.
T Consensus 177 DGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG-p~lslwhLrsse~t~vfpip--a~v~~v~ 253 (325)
T KOG0649|consen 177 DGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG-PKLSLWHLRSSESTCVFPIP--ARVHLVD 253 (325)
T ss_pred CccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC-CceeEEeccCCCceEEEecc--cceeEee
Confidence 999999999999999887543221 11333346778887764 57999999999998888877 6888888
Q ss_pred EcCCCCEEEEEecCCcEEEEEcC
Q 010470 402 LSRSGNIILTSGRDNLHNLFDIR 424 (510)
Q Consensus 402 ~~~~~~~l~~~~~d~~i~i~d~~ 424 (510)
|. .+.+++++..+.|.-|.+.
T Consensus 254 F~--~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 254 FV--DDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred ee--cceEEEeccccceeeeeec
Confidence 85 4567888888888888775
No 183
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.3e-18 Score=166.60 Aligned_cols=281 Identities=16% Similarity=0.241 Sum_probs=205.7
Q ss_pred ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC--C--cceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 010470 223 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNT--G--SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS 298 (510)
Q Consensus 223 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 298 (510)
.|.-.++|.++||+++++|+|..||.|.+|.--. + .....++-|...|.+++|+++|.+|++|+..|.+.+|.+.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 4666799999999999999999999999996432 1 22455677999999999999999999999999999999999
Q ss_pred CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec------------CceeEEEEcCCCCEE
Q 010470 299 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH------------SNCNALAFSMDGQTI 366 (510)
Q Consensus 299 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------~~i~~i~~~~~~~~l 366 (510)
++ .+-++.-.++|..+.++| ++.+......|+.|.+....+.....++.+. +-.+.++++|.-+.+
T Consensus 283 ~~-kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~ 360 (792)
T KOG1963|consen 283 GK-KQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSL 360 (792)
T ss_pred CC-cccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCce
Confidence 88 555666789999999999 7777777778999999987654433333221 115788999977778
Q ss_pred EEecCCCcEEEEECCCCceeeeeccc----------ccccEEEEEEcCCCCEEEEEe--------cCC--cEEEEEcCCc
Q 010470 367 FSGHIDGNLRLWDIQTGKLLSEVAAH----------SLAAVTSISLSRSGNIILTSG--------RDN--LHNLFDIRSL 426 (510)
Q Consensus 367 ~~~~~dg~i~i~d~~~~~~~~~~~~~----------~~~~i~~i~~~~~~~~l~~~~--------~d~--~i~i~d~~~~ 426 (510)
+..+..|.|.+||+-+...+..+... ..-.++.+..+..|.++++.- .|| .+++|-....
T Consensus 361 vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~ 440 (792)
T KOG1963|consen 361 VLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPN 440 (792)
T ss_pred eecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCC
Confidence 88888999999999887766554311 113577788888899998864 233 5677865533
Q ss_pred ee----eeEee-cCCCeeecCceeEEE-cC-CCCEEEEEcCCCeEEEEeCCCcc----------eeecccccCcCEEEEE
Q 010470 427 EV----CGSLR-ATGNRVASNWSRSCI-SP-DESYVAAGSADGSVYIWSISKAD----------IVRTLKEHTAPVLSCS 489 (510)
Q Consensus 427 ~~----~~~~~-~~~~~~~~~~~~~~~-s~-~~~~l~~~~~dg~i~iwd~~~~~----------~~~~~~~~~~~v~~~~ 489 (510)
.. ...+. .|...... .++ ++ .....++++.||.++||-+...+ +...-..|..++++++
T Consensus 441 ~kt~~L~T~I~~PH~~~~va----t~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~ 516 (792)
T KOG1963|consen 441 SKTFILNTKINNPHGNAFVA----TIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALC 516 (792)
T ss_pred cceeEEEEEEecCCCceeEE----EEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchh
Confidence 22 22222 22222221 233 33 33378999999999999884322 1111123788999999
Q ss_pred EeCCCCcEEEeeCCCeEEEcC
Q 010470 490 WSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 490 ~~~~~~~l~s~~~dg~i~iwd 510 (510)
|+.|| .+++++.|+.|.+||
T Consensus 517 fs~dG-slla~s~~~~Itiwd 536 (792)
T KOG1963|consen 517 FSQDG-SLLAVSFDDTITIWD 536 (792)
T ss_pred hcCCC-cEEEEecCCEEEEec
Confidence 99999 566777888999997
No 184
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.84 E-value=6.4e-19 Score=149.51 Aligned_cols=204 Identities=17% Similarity=0.197 Sum_probs=166.1
Q ss_pred cccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc---ceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 010470 222 NAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS---LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS 298 (510)
Q Consensus 222 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 298 (510)
.---.+|+|.+|++|+..+|++.....|.||...... ...++..|...|++++|+|..+.|++|+.|..-++|....
T Consensus 7 ~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 7 HRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred eeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC
Confidence 3345689999999999999999999999999987655 5778889999999999999999999999999999999843
Q ss_pred -CC--eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEe-----eeeeecCceeEEEEcCCCCEEEEec
Q 010470 299 -GR--VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV-----NTIIFHSNCNALAFSMDGQTIFSGH 370 (510)
Q Consensus 299 -~~--~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~i~~i~~~~~~~~l~~~~ 370 (510)
++ +.-.+..++...+++.|+| ..+.|++|+....|.||-++...-- -.....+.|+++.|+|++-.+++|+
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred CCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 33 4555667899999999999 8899999999999999987643221 1112335699999999999999999
Q ss_pred CCCcEEEEECC-----C-------------CceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCce
Q 010470 371 IDGNLRLWDIQ-----T-------------GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLE 427 (510)
Q Consensus 371 ~dg~i~i~d~~-----~-------------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~ 427 (510)
.|+..++|..- . |.....+. ...+.+..+.|+|+|..|+-.+.|+.+.+-|.....
T Consensus 166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 99999999641 0 12222332 233789999999999999999999999999987653
No 185
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.84 E-value=7.8e-19 Score=167.97 Aligned_cols=260 Identities=18% Similarity=0.202 Sum_probs=189.2
Q ss_pred CCeEEEEeCCCCcceecccccccceeEEEEecCCC-EEEEEeCCCeEEEEEcCCCCe--eEe----ecCCCCceEEEEEe
Q 010470 246 DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR-SVIAASSSNNLYVWDVNSGRV--RHT----LTGHTDKVCAVDVS 318 (510)
Q Consensus 246 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~--~~~----~~~~~~~v~~i~~~ 318 (510)
++.+.||++...............|+++.|+|... +++.|+.+|.|.+||+..+.. ... ...|..+++.+.|.
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 34799999987644444445678999999999655 556666899999999987654 222 24688999999998
Q ss_pred cCC-CCEEEEEeCCCcEEEEECCCCeE------eee-------eeecCceeEEEEcC-CCCEEEEecCCCcEEEEECCC-
Q 010470 319 KIS-SRHVVSAAYDRTLKVWDLHKGYC------VNT-------IIFHSNCNALAFSM-DGQTIFSGHIDGNLRLWDIQT- 382 (510)
Q Consensus 319 ~~~-~~~l~s~~~dg~i~iwd~~~~~~------~~~-------~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~- 382 (510)
... +.-|++++.||.|..|+++.-.. ... ......++++.|.+ +...+++|+..|.|+.-+-..
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 731 24489999999999998864322 111 11123478999988 566788999999998743222
Q ss_pred --Cc-----eeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC-CceeeeEeecCCCeeecCceeEEEcCCC-C
Q 010470 383 --GK-----LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR-SLEVCGSLRATGNRVASNWSRSCISPDE-S 453 (510)
Q Consensus 383 --~~-----~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~ 453 (510)
+. ....+..|. ++|+++.++|-+..++.++.|.+++||... ...++..+..+...+ ..++|||.- .
T Consensus 381 ~~~~~~~~~~~~~~~~h~-g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v----~~vaWSptrpa 455 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHI-GPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYV----TDVAWSPTRPA 455 (555)
T ss_pred cccccccccccccccccC-cceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhcccee----eeeEEcCcCce
Confidence 11 122333444 899999999988777666669999999987 555555555544443 448999965 5
Q ss_pred EEEEEcCCCeEEEEeCCC--cceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 454 YVAAGSADGSVYIWSISK--ADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 454 ~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
.|+++..||.|.+||+.. ..++.+.+.+....+.+.|++.|+.|++|+..|.+.+|+
T Consensus 456 vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 456 VFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred EEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 678888899999999865 355666655666778889999999999999999999874
No 186
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.84 E-value=1.7e-18 Score=147.40 Aligned_cols=276 Identities=13% Similarity=0.223 Sum_probs=202.9
Q ss_pred EEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCCCCeeEeecCC
Q 010470 230 SILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRVRHTLTGH 308 (510)
Q Consensus 230 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~ 308 (510)
-++|||+|+++|+++.- .+.|-|.++.+....+. .-..|.-+.|..|.-+++.+. .++.|.+|++...+-..++...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 36799999999999865 88888988877654433 356777899998888777664 6789999999999888899888
Q ss_pred CCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCC----------------
Q 010470 309 TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHID---------------- 372 (510)
Q Consensus 309 ~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---------------- 372 (510)
..++.+++|+|++..++.+...+-.|.+|.+.+.+....-.....+..++|+|||++.+..+..
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~l 170 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWIL 170 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHH
Confidence 9999999999955577778888999999999887766555555667889999999987665432
Q ss_pred --------------------CcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEe
Q 010470 373 --------------------GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 432 (510)
Q Consensus 373 --------------------g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (510)
..+.+||.--.-.+.. -+..-++..+.|+|.++++++|+.|+.+++.+--+.+....+
T Consensus 171 l~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a--Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ef 248 (447)
T KOG4497|consen 171 LKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA--YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEF 248 (447)
T ss_pred HHhcCCCcccccCceECCCCcEEEEecchhhheeee--eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhh
Confidence 1233444211111111 122257889999999999999999998887553322221110
Q ss_pred ------------------------------------------------------------ecCC--CeeecCceeEEEcC
Q 010470 433 ------------------------------------------------------------RATG--NRVASNWSRSCISP 450 (510)
Q Consensus 433 ------------------------------------------------------------~~~~--~~~~~~~~~~~~s~ 450 (510)
+... ......+..++|++
T Consensus 249 lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~ 328 (447)
T KOG4497|consen 249 LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC 328 (447)
T ss_pred ccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC
Confidence 0000 00122455689999
Q ss_pred CCCEEEEEcCC--CeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 451 DESYVAAGSAD--GSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 451 ~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
|..|+++-.+. +.+.+||+...+....+. ...+|....|+|....|+.+.....+++|.
T Consensus 329 Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~ 389 (447)
T KOG4497|consen 329 DSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWA 389 (447)
T ss_pred CceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEc
Confidence 99999987653 679999999887766654 456899999999999999888888899984
No 187
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2.5e-19 Score=153.25 Aligned_cols=269 Identities=16% Similarity=0.250 Sum_probs=187.5
Q ss_pred hhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEec--CCCEEEEeeCCCeEEEEeCCCCcceec--cc
Q 010470 189 LAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEY--NSARLISGGQDKSIKLWDTNTGSLSST--LY 264 (510)
Q Consensus 189 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~ 264 (510)
++.+-..|.+++++.+. .+....|++|.+.++.+.|.. .+..+.+|+.||+|++||+.+...... ..
T Consensus 43 vav~lSngsv~lyd~~t---------g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~ 113 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKGT---------GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT 113 (376)
T ss_pred EEEEecCCeEEEEeccc---------hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc
Confidence 44555667777766543 446778899999999999987 467899999999999999987655433 33
Q ss_pred ccc-cceeEEEEecCCCEEEEEe----CCCeEEEEEcCCCCe-eEee-cCCCCceEEEEEecCCCCEEEEEeCCCcEEEE
Q 010470 265 GCL-GSVLDLAITHDNRSVIAAS----SSNNLYVWDVNSGRV-RHTL-TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 337 (510)
Q Consensus 265 ~~~-~~v~~~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~-~~~~-~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iw 337 (510)
.+. .+..+++....++.+++|. .+-.|.+||++..+. +..+ ..|.+.|+++.|+|.+.++|++||.||.|.+|
T Consensus 114 ~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlf 193 (376)
T KOG1188|consen 114 QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLF 193 (376)
T ss_pred CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEee
Confidence 444 4566666666777777775 466899999987764 4443 57999999999999999999999999999999
Q ss_pred ECCCC----eEeeeeeecCceeEEEEcCCC-CEEEEecCCCcEEEEECCCCceeeeeccccc-----------ccEEEEE
Q 010470 338 DLHKG----YCVNTIIFHSNCNALAFSMDG-QTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL-----------AAVTSIS 401 (510)
Q Consensus 338 d~~~~----~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----------~~i~~i~ 401 (510)
|+... ....++...+.|.++.|..++ +.|.+-+..+...+|++..+.....+..+.. ..+-...
T Consensus 194 D~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~ 273 (376)
T KOG1188|consen 194 DTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEH 273 (376)
T ss_pred ecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecc
Confidence 99754 234555666779999998776 3577778888999999998876555443310 1111111
Q ss_pred EcCCCCEEEEEec-CCcEEEEEcC---C---ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470 402 LSRSGNIILTSGR-DNLHNLFDIR---S---LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI 469 (510)
Q Consensus 402 ~~~~~~~l~~~~~-d~~i~i~d~~---~---~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~ 469 (510)
...++..++.++. -|...++-+. + ......+.++...+ +..+.|...+.++++|+.||.+.+|..
T Consensus 274 ~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~ei---VR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 274 SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEI---VRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHH---HHHHhhhcccceeeccCCCceEEEEec
Confidence 1223444444444 5555555443 2 22233333322222 233667788999999999999999985
No 188
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.83 E-value=5.7e-19 Score=159.59 Aligned_cols=262 Identities=16% Similarity=0.233 Sum_probs=190.8
Q ss_pred ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccce-eEEEEe-------cCCCEEEEEeCCCeEEEE
Q 010470 223 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSV-LDLAIT-------HDNRSVIAASSSNNLYVW 294 (510)
Q Consensus 223 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~-------~~~~~l~~~~~d~~i~iw 294 (510)
-|...|.|+.|+.+...+.+++++..+.-||+.+... ..+.-....+ +.+..- .....++.+++||.+.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhh-hhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 4666778999998877777666555455555543221 1111111111 111111 123578899999999998
Q ss_pred EcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee-ecCceeEEEEcCCCCEEEEecCCC
Q 010470 295 DVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII-FHSNCNALAFSMDGQTIFSGHIDG 373 (510)
Q Consensus 295 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg 373 (510)
+ ..++....+..|.+.+.+-.|+| ++.-+++++.||.|++|.- +|....++. ...+|.|++|.|+.+.++.+.. |
T Consensus 91 ~-k~~rVE~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~ 166 (737)
T KOG1524|consen 91 N-KSARVERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-G 166 (737)
T ss_pred c-ccchhhhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecC-C
Confidence 7 66888888999999999999999 8899999999999999985 565544443 3466999999998877665543 5
Q ss_pred cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCC
Q 010470 374 NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES 453 (510)
Q Consensus 374 ~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 453 (510)
.+.|=.+.....+..+..|. +-|.++.|+|..+++++|+.|-..+|||... ..+..-..+..++ ++++|.|+ .
T Consensus 167 h~~IKpL~~n~k~i~WkAHD-GiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~ey~I----TSva~npd-~ 239 (737)
T KOG1524|consen 167 HISIKPLAANSKIIRWRAHD-GLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAAEEYAI----TSVAFNPE-K 239 (737)
T ss_pred eEEEeecccccceeEEeccC-cEEEEeecCccccceeecCCceeEEeecccC-cccccCChhccce----eeeeeccc-c
Confidence 78887777777777888887 8999999999999999999999999999753 4444444555554 44999999 6
Q ss_pred EEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEE
Q 010470 454 YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCV 508 (510)
Q Consensus 454 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i 508 (510)
.++.||.+ ++++= +...++|..++||+||..++.|+..|.+.+
T Consensus 240 ~~~v~S~n-t~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 240 DYLLWSYN-TARFS-----------SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ceeeeeee-eeeec-----------CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 66666643 34411 124578999999999999999999998754
No 189
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.82 E-value=1.7e-18 Score=165.73 Aligned_cols=242 Identities=16% Similarity=0.178 Sum_probs=179.7
Q ss_pred ccceEEEEEec-CCCEEEEeeCCCeEEEEeCCCCcc--ee----cccccccceeEEEEecCCCE--EEEEeCCCeEEEEE
Q 010470 225 EGGCASILFEY-NSARLISGGQDKSIKLWDTNTGSL--SS----TLYGCLGSVLDLAITHDNRS--VIAASSSNNLYVWD 295 (510)
Q Consensus 225 ~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~--~~----~~~~~~~~v~~~~~~~~~~~--l~~~~~d~~i~iwd 295 (510)
...|+|+.|+| +..+++.|+.+|.|.+||+..+.. .. ....|..+++.+.|..+-.- +++++.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 45799999999 667889999999999999976654 22 23478899999999765544 99999999999998
Q ss_pred cCCCCe-e-----Eeec------CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE--------eeee-eecCce
Q 010470 296 VNSGRV-R-----HTLT------GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC--------VNTI-IFHSNC 354 (510)
Q Consensus 296 ~~~~~~-~-----~~~~------~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~-~~~~~i 354 (510)
++.-.. . .... .....+++++|.+.+.+.|+.|+..|.|..-+-...+. ...+ .+.+.+
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 764321 1 1111 12346889999998999999999999998844332211 1122 234669
Q ss_pred eEEEEcCCCCEEEEecCCCcEEEEECC-CCceeeeecccccccEEEEEEcCCCC-EEEEEecCCcEEEEEcCCc--eeee
Q 010470 355 NALAFSMDGQTIFSGHIDGNLRLWDIQ-TGKLLSEVAAHSLAAVTSISLSRSGN-IILTSGRDNLHNLFDIRSL--EVCG 430 (510)
Q Consensus 355 ~~i~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~i~d~~~~--~~~~ 430 (510)
+++.++|-+..++..+.|.++++|... ...++..+..+. ..+++++|||... .|+++..+|.+.+||+... .++.
T Consensus 402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~-~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~ 480 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSP-DYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL 480 (555)
T ss_pred EeeecCCCccceeeeeccceeEeccccCCCCcchhhhhcc-ceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcc
Confidence 999999977766655559999999987 666776666665 6799999999765 6777778999999999743 3333
Q ss_pred EeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC
Q 010470 431 SLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK 471 (510)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 471 (510)
+.... ......+.|+++|+.|++|...|++++|++..
T Consensus 481 s~~~~----~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 481 SQKVC----SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccccc----ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 33333 22234477899999999999999999999863
No 190
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.82 E-value=1.4e-19 Score=160.81 Aligned_cols=268 Identities=22% Similarity=0.310 Sum_probs=210.3
Q ss_pred cccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeE
Q 010470 224 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH 303 (510)
Q Consensus 224 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 303 (510)
...+...+.|+.+|.+|+.|+.-|.|-.+|+.++++...+.. ...|.++.|..+..+++++- .+.++||| ..|..++
T Consensus 128 ~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElH 204 (545)
T KOG1272|consen 128 PEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELH 204 (545)
T ss_pred cccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEe
Confidence 344667899999999999999999999999999998777653 56788899988777666654 56899999 6687788
Q ss_pred eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCC
Q 010470 304 TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQT 382 (510)
Q Consensus 304 ~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~ 382 (510)
.+..| ..|..+.|.| ...+|++++..|.++.-|+.+|+.+..+... +.+..++-+|-+..+-+|..+|+|.+|...+
T Consensus 205 Clk~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s 282 (545)
T KOG1272|consen 205 CLKRH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS 282 (545)
T ss_pred ehhhc-Cchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC
Confidence 77755 6788999999 7778889999999999999999998888665 5588899999999999999999999999999
Q ss_pred CceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCC
Q 010470 383 GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADG 462 (510)
Q Consensus 383 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg 462 (510)
..++..+..|. ++|.+|++.++|+|+++++.|..++|||+++...+.++..+... ..+++|..|- ||.+- ..
T Consensus 283 kePLvKiLcH~-g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a-----~~ls~Sqkgl-LA~~~-G~ 354 (545)
T KOG1272|consen 283 KEPLVKILCHR-GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPA-----SNLSLSQKGL-LALSY-GD 354 (545)
T ss_pred cchHHHHHhcC-CCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCc-----cccccccccc-eeeec-CC
Confidence 99999998888 99999999999999999999999999999998876666552221 2266766553 34333 34
Q ss_pred eEEEEe-CCCcc--eeecccc--cCcCEEEEEEeCCCCcEEEeeCCC
Q 010470 463 SVYIWS-ISKAD--IVRTLKE--HTAPVLSCSWSGLGKPLASADKNG 504 (510)
Q Consensus 463 ~i~iwd-~~~~~--~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg 504 (510)
.|.||. ...+. ....+-. ..++|.++.|.|-...|-.|-..|
T Consensus 355 ~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 355 HVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred eeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 599995 22221 1111111 345899999998766555544433
No 191
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.82 E-value=1.7e-18 Score=167.22 Aligned_cols=232 Identities=18% Similarity=0.151 Sum_probs=165.1
Q ss_pred CCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCC---CeEEEEEcCCCCe--eEeecCCCCceEEEEEecC
Q 010470 246 DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS---NNLYVWDVNSGRV--RHTLTGHTDKVCAVDVSKI 320 (510)
Q Consensus 246 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~--~~~~~~~~~~v~~i~~~~~ 320 (510)
+..|.+||..... ...+..|...+.++.|+|||+.|+.++.+ ..|++||+.+++. +..+.+| ...++|+|
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSP- 257 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSP- 257 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECC-
Confidence 4689999987554 45567788889999999999999988753 3799999988764 3333333 34689999
Q ss_pred CCCEEEEE-eCCCcEEE--EECCCCeEeeeeeecCceeEEEEcCCCCEEEEe-cCCCcEEEEECCCC-ceeeeecccccc
Q 010470 321 SSRHVVSA-AYDRTLKV--WDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSG-HIDGNLRLWDIQTG-KLLSEVAAHSLA 395 (510)
Q Consensus 321 ~~~~l~s~-~~dg~i~i--wd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~-~~~~~~~~~~~~ 395 (510)
+++.|+.+ +.+|.+.| ||+.++...........+....|+|||+.|+.+ ..+|...+|++... .....+ .+. .
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~-~ 335 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGR-G 335 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCC-C
Confidence 77766655 46776555 577666654433333457889999999987754 45788888876432 222223 222 2
Q ss_pred cEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC--Ccc
Q 010470 396 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS--KAD 473 (510)
Q Consensus 396 ~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~ 473 (510)
.+..|+|+|++|++.+.++ +.+||+.++......... .. ..+.|+|||++|++++.+|.+.+|.+. +|.
T Consensus 336 --~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~----~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~ 406 (429)
T PRK01742 336 --YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LD----ESPSISPNGIMIIYSSTQGLGKVLQLVSADGR 406 (429)
T ss_pred --CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CC----CCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 4578999999998887765 556999887654322221 11 236799999999999999988888753 577
Q ss_pred eeecccccCcCEEEEEEeCC
Q 010470 474 IVRTLKEHTAPVLSCSWSGL 493 (510)
Q Consensus 474 ~~~~~~~~~~~v~~~~~~~~ 493 (510)
....+..|.+.+..++|+|-
T Consensus 407 ~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 407 FKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ceEEccCCCCCCCCcccCCC
Confidence 88888888888999999985
No 192
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.82 E-value=3.6e-17 Score=152.59 Aligned_cols=290 Identities=17% Similarity=0.191 Sum_probs=188.9
Q ss_pred ccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-CCCeEEE
Q 010470 215 STCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYV 293 (510)
Q Consensus 215 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i 293 (510)
.+...++......-..+.|+|||+++++++.||.|.++|+.+++.+.++.... ...++++++||+++++++ ..+.+.+
T Consensus 26 ~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v 104 (369)
T PF02239_consen 26 NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSV 104 (369)
T ss_dssp -SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEE
T ss_pred CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeE
Confidence 34566666554444557899999999999999999999999999998887544 457899999999999886 6889999
Q ss_pred EEcCCCCeeEeecCC-------CCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEe--eeeeecCceeEEEEcCCCC
Q 010470 294 WDVNSGRVRHTLTGH-------TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV--NTIIFHSNCNALAFSMDGQ 364 (510)
Q Consensus 294 wd~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~i~~i~~~~~~~ 364 (510)
+|..+.+++..+... ...+.++..+|....++++.-..+.|.+.|......+ ..+..........|+|+++
T Consensus 105 ~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgr 184 (369)
T PF02239_consen 105 IDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGR 184 (369)
T ss_dssp EETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSS
T ss_pred eccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccc
Confidence 999999988877532 3467788888833335555555588988898765433 3444455688999999999
Q ss_pred EEEEe-cCCCcEEEEECCCCceeeeeccc---ccccEEEEE-------Ec--CCCCEEEEEecCCcEEEEEcCCceeeeE
Q 010470 365 TIFSG-HIDGNLRLWDIQTGKLLSEVAAH---SLAAVTSIS-------LS--RSGNIILTSGRDNLHNLFDIRSLEVCGS 431 (510)
Q Consensus 365 ~l~~~-~~dg~i~i~d~~~~~~~~~~~~~---~~~~i~~i~-------~~--~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 431 (510)
+++++ ..+..|.++|..+++.+..+... +..+...+- |. ..+...++.-..+.+.+||..+++.+..
T Consensus 185 y~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~ 264 (369)
T PF02239_consen 185 YFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKT 264 (369)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEE
T ss_pred eeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEE
Confidence 87764 55678999999998877655432 112232221 11 1222332333344666789999999999
Q ss_pred eecCCCeeecCceeEEEcCCCCEEEEE----cCCCeEEEEeCCCcceeeccccc-CcCEEEEEEeCCCCcEEEee--CCC
Q 010470 432 LRATGNRVASNWSRSCISPDESYVAAG----SADGSVYIWSISKADIVRTLKEH-TAPVLSCSWSGLGKPLASAD--KNG 504 (510)
Q Consensus 432 ~~~~~~~~~~~~~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~--~dg 504 (510)
+...+.+.. +..+|+++++++. ...++|.++|..+.+.+..+... ...+..+.|+++|+.+..+. .+|
T Consensus 265 I~~~G~glF-----i~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~ 339 (369)
T PF02239_consen 265 IPTQGGGLF-----IKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNG 339 (369)
T ss_dssp EE-SSSS-------EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TT
T ss_pred EECCCCcce-----eecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCC
Confidence 988776643 6789999999998 44588999999999888777532 23589999999999665443 344
Q ss_pred eEEEcC
Q 010470 505 VVCVWT 510 (510)
Q Consensus 505 ~i~iwd 510 (510)
.|.+||
T Consensus 340 ~i~v~D 345 (369)
T PF02239_consen 340 AIVVYD 345 (369)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 698886
No 193
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.82 E-value=2.3e-17 Score=154.69 Aligned_cols=263 Identities=13% Similarity=0.201 Sum_probs=174.2
Q ss_pred cCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEee-CCCeEEEEeCC-CCcc--eeccccccc
Q 010470 193 QVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGG-QDKSIKLWDTN-TGSL--SSTLYGCLG 268 (510)
Q Consensus 193 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~-~~~~--~~~~~~~~~ 268 (510)
..++.+..|+.... -.......+. +.+....++++|++++|++++ .++.|.+|++. ++.. ..... ..+
T Consensus 9 ~~~~~I~~~~~~~~------g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~ 80 (330)
T PRK11028 9 PESQQIHVWNLNHE------GALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPG 80 (330)
T ss_pred CCCCCEEEEEECCC------CceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCC
Confidence 44666777764211 0112334443 345678899999999987664 57889999986 3432 22222 234
Q ss_pred ceeEEEEecCCCEEEEEe-CCCeEEEEEcCCC-C---eeEeecCCCCceEEEEEecCCCCEE-EEEeCCCcEEEEECCCC
Q 010470 269 SVLDLAITHDNRSVIAAS-SSNNLYVWDVNSG-R---VRHTLTGHTDKVCAVDVSKISSRHV-VSAAYDRTLKVWDLHKG 342 (510)
Q Consensus 269 ~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~-~---~~~~~~~~~~~v~~i~~~~~~~~~l-~s~~~dg~i~iwd~~~~ 342 (510)
....++|+|+++++++++ .++.|.+|++.+. . ....+. +.....++.++| +++++ ++...++.|.+||+.+.
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCC
Confidence 567899999999999887 4889999999743 2 222232 234467788999 66666 45556799999999763
Q ss_pred eEee-------eeeecCceeEEEEcCCCCEEEEecC-CCcEEEEECCC--Cc--eeeeeccc-----ccccEEEEEEcCC
Q 010470 343 YCVN-------TIIFHSNCNALAFSMDGQTIFSGHI-DGNLRLWDIQT--GK--LLSEVAAH-----SLAAVTSISLSRS 405 (510)
Q Consensus 343 ~~~~-------~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~--~~--~~~~~~~~-----~~~~i~~i~~~~~ 405 (510)
..+. .......+..+.|+|+|+++++++. ++.|.+||+.. +. .+..+... .......+.++|+
T Consensus 159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd 238 (330)
T PRK11028 159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD 238 (330)
T ss_pred CcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence 2221 1223445788999999999988765 89999999973 32 23333211 1112346889999
Q ss_pred CCEEEEEec-CCcEEEEEcCCce----eeeEeecCCCeeecCceeEEEcCCCCEEEEEcC-CCeEEEEeCC
Q 010470 406 GNIILTSGR-DNLHNLFDIRSLE----VCGSLRATGNRVASNWSRSCISPDESYVAAGSA-DGSVYIWSIS 470 (510)
Q Consensus 406 ~~~l~~~~~-d~~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~ 470 (510)
|++++++.. ++.|.+|++.... .+...... .....+.++|+|++|++++. +++|.+|+++
T Consensus 239 g~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-----~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 239 GRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-----TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-----ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 999998864 6899999986432 22222211 12234789999999998775 8899999875
No 194
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=1.7e-17 Score=143.72 Aligned_cols=231 Identities=17% Similarity=0.247 Sum_probs=178.7
Q ss_pred cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCC--CcEEEEECCCCeEe
Q 010470 268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD--RTLKVWDLHKGYCV 345 (510)
Q Consensus 268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~ 345 (510)
..+..+.|+.+...|..|+.|| .++|+................|.-+-|+ ..+++..+.+ +.+++++++.+..+
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS---SSLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS---SSLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc---cceeEEEecCCCceEEEEEcccCceE
Confidence 3556677888888888888887 5777766543321112122334444443 4555555544 45999999999999
Q ss_pred eeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccc--ccccEEEEEEcCCCCEEEEEe--cCCcEEEE
Q 010470 346 NTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH--SLAAVTSISLSRSGNIILTSG--RDNLHNLF 421 (510)
Q Consensus 346 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~--~d~~i~i~ 421 (510)
..+..+.+|.++.++ .+.|+++-.+ .|+|||+++.+.+.++... +...+.++.+++.+.+++.-+ ..|.|.+|
T Consensus 82 Ce~~fpt~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 82 CEIFFPTSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred EEEecCCceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 999999999999986 4556655554 4999999999999888755 324566666666677887643 46899999
Q ss_pred EcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCe-EEEEeCCCcceeeccccc--CcCEEEEEEeCCCCcEE
Q 010470 422 DIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGS-VYIWSISKADIVRTLKEH--TAPVLSCSWSGLGKPLA 498 (510)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~ 498 (510)
|+.+.+.+..+..|...+.. ++|+++|.+||++|..|+ |+||.+.+|+.+..|+.. ...|.+++|+|++.+|+
T Consensus 159 d~~nl~~v~~I~aH~~~lAa----lafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~ 234 (391)
T KOG2110|consen 159 DTINLQPVNTINAHKGPLAA----LAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLA 234 (391)
T ss_pred EcccceeeeEEEecCCceeE----EEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEE
Confidence 99999999999999888876 999999999999999997 699999999999998753 34578999999999999
Q ss_pred EeeCCCeEEEc
Q 010470 499 SADKNGVVCVW 509 (510)
Q Consensus 499 s~~~dg~i~iw 509 (510)
+.|..++|++|
T Consensus 235 ~sS~TeTVHiF 245 (391)
T KOG2110|consen 235 ASSNTETVHIF 245 (391)
T ss_pred EecCCCeEEEE
Confidence 99999999987
No 195
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=6.7e-19 Score=155.10 Aligned_cols=194 Identities=19% Similarity=0.276 Sum_probs=156.8
Q ss_pred EEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecC-
Q 010470 229 ASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTG- 307 (510)
Q Consensus 229 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~- 307 (510)
.+++|+++|..+++|+.||+++||++++...+.....|.+.|.++.|+|||+.|++.+.| ..+||+.+++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999998888888888999999999999999999999999 899999999976655542
Q ss_pred -CCCceEEEEEecCCC---CE--EEEEeCCCcEEEEECCCC------eEeeeeeecCceeEEEEcCCCCEEEEecCCCcE
Q 010470 308 -HTDKVCAVDVSKISS---RH--VVSAAYDRTLKVWDLHKG------YCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNL 375 (510)
Q Consensus 308 -~~~~v~~i~~~~~~~---~~--l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i 375 (510)
.+.....+.|+. ++ .+ ++.....+.|..||+... +..+.+.....+++++++++|++++.|+.||.|
T Consensus 227 ~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 227 SKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred ccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 223345566665 33 22 223334566777665421 112222334569999999999999999999999
Q ss_pred EEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC
Q 010470 376 RLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR 424 (510)
Q Consensus 376 ~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 424 (510)
.+++..+.+.+..++..|...|+.+.|+|+.+++++.+.+....+..+.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 9999999999988887777899999999999999999999888887664
No 196
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.1e-17 Score=141.17 Aligned_cols=212 Identities=22% Similarity=0.347 Sum_probs=149.2
Q ss_pred cccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC----CeeEeecCCCCceEEEEEecC-CCCEEEEEeCCCcEEEEE
Q 010470 264 YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG----RVRHTLTGHTDKVCAVDVSKI-SSRHVVSAAYDRTLKVWD 338 (510)
Q Consensus 264 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~-~~~~l~s~~~dg~i~iwd 338 (510)
.+|..-|.++.|.+.|+.+++|+.|++|+|||..+. .+....+.|.+.|..+.|.+. -|..+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 468888999999999999999999999999997543 356667889999999999764 578899999999999997
Q ss_pred CCCC-------eE--eeee-eecCceeEEEEcC--CCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCC
Q 010470 339 LHKG-------YC--VNTI-IFHSNCNALAFSM--DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSG 406 (510)
Q Consensus 339 ~~~~-------~~--~~~~-~~~~~i~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~ 406 (510)
-... +- ..++ ...+.++.++|.| -|-.+++++.||.++||+....-.+......+ .+..+. +|-|
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~--Ei~~~~-~pp~ 166 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQH--EIQNVI-DPPG 166 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhh--hhhhcc-CCcc
Confidence 5211 11 1122 2235699999999 57789999999999999986554444333221 111000 0101
Q ss_pred CEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcC---CCCEEEEEcCC-----CeEEEEeCCCc----ce
Q 010470 407 NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP---DESYVAAGSAD-----GSVYIWSISKA----DI 474 (510)
Q Consensus 407 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~---~~~~l~~~~~d-----g~i~iwd~~~~----~~ 474 (510)
+ ......++.|+| ...+|++|+.+ +.++||....+ ..
T Consensus 167 ~-------------------------------~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~k 215 (361)
T KOG2445|consen 167 K-------------------------------NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLK 215 (361)
T ss_pred c-------------------------------ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeee
Confidence 0 011112244443 23467777655 46888876543 34
Q ss_pred eecccccCcCEEEEEEeCCC----CcEEEeeCCCeEEEcC
Q 010470 475 VRTLKEHTAPVLSCSWSGLG----KPLASADKNGVVCVWT 510 (510)
Q Consensus 475 ~~~~~~~~~~v~~~~~~~~~----~~l~s~~~dg~i~iwd 510 (510)
+.++.+|..+|++++|.|+- ..|++++.|| |+||.
T Consensus 216 va~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~ 254 (361)
T KOG2445|consen 216 VAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFK 254 (361)
T ss_pred ehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEE
Confidence 66788999999999999973 3689999999 99984
No 197
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.2e-17 Score=147.23 Aligned_cols=194 Identities=23% Similarity=0.275 Sum_probs=146.8
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee-eecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecc
Q 010470 313 CAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI-IFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAA 391 (510)
Q Consensus 313 ~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 391 (510)
.+++|++ ++..+++|+.||++++|+..+...+... ..+..|.++.|+|||++|++-+.| ..+||+..++..+.....
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 6788888 8899999999999999996665544444 455779999999999999999988 899999999977766552
Q ss_pred -cccccEEEEEEcCCC---CE--EEEEecCCcEEEEEcCCceeeeEeecCCCe-eecCceeEEEcCCCCEEEEEcCCCeE
Q 010470 392 -HSLAAVTSISLSRSG---NI--ILTSGRDNLHNLFDIRSLEVCGSLRATGNR-VASNWSRSCISPDESYVAAGSADGSV 464 (510)
Q Consensus 392 -~~~~~i~~i~~~~~~---~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~dg~i 464 (510)
........+.|+.++ .+ ++.....+.|..||+....--..++..... ....+++++++++|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 223456778888776 33 333344567777776543221111111111 11246679999999999999999999
Q ss_pred EEEeCCCcceeeccc-ccCcCEEEEEEeCCCCcEEEeeCCCeEEE
Q 010470 465 YIWSISKADIVRTLK-EHTAPVLSCSWSGLGKPLASADKNGVVCV 508 (510)
Q Consensus 465 ~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~i 508 (510)
.|++..+-+.+...+ .|...|+.+.|+|+.+++++.+.|..+.|
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 999999888776664 59999999999999999999888877665
No 198
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=5.1e-18 Score=148.51 Aligned_cols=159 Identities=22% Similarity=0.374 Sum_probs=135.8
Q ss_pred cceEEEEEecCCC-EEEEeeCCCeEEEEeCCCCc---------ceecccccccceeEEEEecCCCEEEEEeCCCeEEEEE
Q 010470 226 GGCASILFEYNSA-RLISGGQDKSIKLWDTNTGS---------LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD 295 (510)
Q Consensus 226 ~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 295 (510)
.+|..+.|.+++. .++||+.|..|++|-++.+. ....+..|...|+++.|+|+|..|++|+.+|.|.+|-
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 4799999998776 99999999999999875432 2456778999999999999999999999999999997
Q ss_pred cC--------C--------CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEE
Q 010470 296 VN--------S--------GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALA 358 (510)
Q Consensus 296 ~~--------~--------~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~ 358 (510)
.. + ......+.+|...|..++|+| ++.++++++.|..+++||+..|.....+..+. .+..++
T Consensus 94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred ecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 65 2 123456678999999999999 89999999999999999999999998887775 489999
Q ss_pred EcCCCCEEEEecCCCcEEEEECCCCce
Q 010470 359 FSMDGQTIFSGHIDGNLRLWDIQTGKL 385 (510)
Q Consensus 359 ~~~~~~~l~~~~~dg~i~i~d~~~~~~ 385 (510)
|.|-++++++-+.|...+.+.+.....
T Consensus 173 wDpl~qyv~s~s~dr~~~~~~~~~~~~ 199 (434)
T KOG1009|consen 173 WDPLNQYVASKSSDRHPEGFSAKLKQV 199 (434)
T ss_pred cchhhhhhhhhccCcccceeeeeeeee
Confidence 999999999988888777777654433
No 199
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=3.3e-17 Score=157.19 Aligned_cols=278 Identities=18% Similarity=0.247 Sum_probs=201.9
Q ss_pred cccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCC---EEEEEeCCCeEEEEEcCC
Q 010470 222 NAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR---SVIAASSSNNLYVWDVNS 298 (510)
Q Consensus 222 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~ 298 (510)
.|-..--..-.||+|+++++... +..|.||...++.++..+.+|..+++.+.+.|... ++++++.+|.|++||...
T Consensus 13 gg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~ 91 (792)
T KOG1963|consen 13 GGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSD 91 (792)
T ss_pred ccccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCC
Confidence 33333344457899998888777 45899999999999999999999999999987654 678999999999999988
Q ss_pred CCeeEeecCCCCceE-----------------------------------------------------------EEEEec
Q 010470 299 GRVRHTLTGHTDKVC-----------------------------------------------------------AVDVSK 319 (510)
Q Consensus 299 ~~~~~~~~~~~~~v~-----------------------------------------------------------~i~~~~ 319 (510)
+..+.++..+. ++. ++.+++
T Consensus 92 ~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~ 170 (792)
T KOG1963|consen 92 GELLKTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN 170 (792)
T ss_pred cEEEEEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC
Confidence 87666554221 111 111111
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeEeeeee----ec--CceeEEEEcCCCCEEEEecCCCcEEEEECCC----Cceeeee
Q 010470 320 ISSRHVVSAAYDRTLKVWDLHKGYCVNTII----FH--SNCNALAFSMDGQTIFSGHIDGNLRLWDIQT----GKLLSEV 389 (510)
Q Consensus 320 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~--~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~ 389 (510)
.+. +.....+..+.+|+..++. ..... .+ -.+++.+++|+++++++|..||.|.+|.--. ......+
T Consensus 171 -~ge-~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~l 247 (792)
T KOG1963|consen 171 -SGE-FKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLL 247 (792)
T ss_pred -Cce-EEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEE
Confidence 111 1111223345566665543 11111 11 2368999999999999999999999996322 1234455
Q ss_pred cccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470 390 AAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI 469 (510)
Q Consensus 390 ~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~ 469 (510)
.-|+ ..|.++.|+++|.+|++|+..+.+.+|.+.+++ ...++.-+.+ +..+.+|||+.+.+....|+.|.+...
T Consensus 248 HWH~-~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~----I~~i~vS~ds~~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 248 HWHH-DEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSP----ILHIVVSPDSDLYSLVLEDNQIHLIKA 321 (792)
T ss_pred Eecc-cccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCe----eEEEEEcCCCCeEEEEecCceEEEEec
Confidence 6666 899999999999999999999999999999887 3344333333 445899999999999999999999998
Q ss_pred CCcceeeccccc-----------CcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 470 SKADIVRTLKEH-----------TAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 470 ~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
.+.....++.+- .+-.+.++++|.-+.++-.+..|.|.+||
T Consensus 322 ~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~yd 373 (792)
T KOG1963|consen 322 SDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYD 373 (792)
T ss_pred cchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEe
Confidence 776555444331 33467889999778899999999999986
No 200
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.80 E-value=4.5e-18 Score=153.98 Aligned_cols=247 Identities=15% Similarity=0.152 Sum_probs=171.6
Q ss_pred ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcce----ecccccccceeEEEE-----ecCCCEEEEEeCCCeEEEEEcC
Q 010470 227 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLS----STLYGCLGSVLDLAI-----THDNRSVIAASSSNNLYVWDVN 297 (510)
Q Consensus 227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~-----~~~~~~l~~~~~d~~i~iwd~~ 297 (510)
.+....++-.|++|+..-. ..+.+|+...+..+ ....-.....+|-+| .|.+--+++|-.-|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 3455555666777655432 36888887643221 111111122233334 4566678889889999999876
Q ss_pred CCCeeEeec----CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCC
Q 010470 298 SGRVRHTLT----GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDG 373 (510)
Q Consensus 298 ~~~~~~~~~----~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg 373 (510)
..+....+. -....|+|+.|-|.+...++.+-.+|.+++||.. +.......+....+++..+.....-+
T Consensus 204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~-------~~~~~t~p~~~~~k~~~~f~i~t~ks 276 (636)
T KOG2394|consen 204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE-------IVCGATAPSYQALKDGDQFAILTSKS 276 (636)
T ss_pred hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecc-------ccccCCCCcccccCCCCeeEEeeeec
Confidence 533222221 1347899999999888899999999999999972 11122222233344666655443221
Q ss_pred cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCC
Q 010470 374 NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES 453 (510)
Q Consensus 374 ~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 453 (510)
. .+..++..+.... +.|..++|+|||++|++.+.||.++|||..+.+....++.-... ..+++|||||+
T Consensus 277 k------~~rNPv~~w~~~~-g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGG----LLCvcWSPDGK 345 (636)
T KOG2394|consen 277 K------KTRNPVARWHIGE-GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGG----LLCVCWSPDGK 345 (636)
T ss_pred c------ccCCccceeEecc-ccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccc----eEEEEEcCCcc
Confidence 1 1224555555444 68999999999999999999999999999987776655544433 44599999999
Q ss_pred EEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeC
Q 010470 454 YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 492 (510)
Q Consensus 454 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 492 (510)
||++|+.|.-|.||.+..++.+..-.+|.+.|+.|+|.|
T Consensus 346 yIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 346 YIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999999999999999999999999999999999983
No 201
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.80 E-value=4.3e-17 Score=136.59 Aligned_cols=278 Identities=18% Similarity=0.279 Sum_probs=197.1
Q ss_pred eeeccccccceEEEEEec--C-CCEEEEeeC----CCeEEEEeCC--CCcceec-ccccccceeEEEEecCCC----EEE
Q 010470 218 KHKINAHEGGCASILFEY--N-SARLISGGQ----DKSIKLWDTN--TGSLSST-LYGCLGSVLDLAITHDNR----SVI 283 (510)
Q Consensus 218 ~~~~~~h~~~v~~~~~s~--~-~~~l~s~~~----dg~i~iwd~~--~~~~~~~-~~~~~~~v~~~~~~~~~~----~l~ 283 (510)
+.++.++- ++.++.|+. + +.+|+.|+- .+.|.|..+. +++.+.. -..|.-+++.+.|.|+.. .++
T Consensus 38 iy~Y~ap~-~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlL 116 (364)
T KOG0290|consen 38 IYTYNAPW-PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLL 116 (364)
T ss_pred EEEecCCC-ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchh
Confidence 44555443 578888883 3 346888874 4567776553 3443322 246888999999999863 233
Q ss_pred EEeCCCeEEEEEcCC--CCe--eEe-----ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE----eeeeee
Q 010470 284 AASSSNNLYVWDVNS--GRV--RHT-----LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC----VNTIIF 350 (510)
Q Consensus 284 ~~~~d~~i~iwd~~~--~~~--~~~-----~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~ 350 (510)
+.+. ..+++|.+.. .+. ... -..+..+++++.|+..+.++|.+++-|-+..|||+.++.. .+.+.+
T Consensus 117 ATs~-D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAH 195 (364)
T KOG0290|consen 117 ATSS-DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAH 195 (364)
T ss_pred hccc-CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEec
Confidence 3333 3799999873 221 111 1236678999999999999999999999999999998732 333444
Q ss_pred cCceeEEEEcCCC-CEEEEecCCCcEEEEECCCCceeeeecccc--cccEEEEEEcCC-CCEEEEEecC-CcEEEEEcCC
Q 010470 351 HSNCNALAFSMDG-QTIFSGHIDGNLRLWDIQTGKLLSEVAAHS--LAAVTSISLSRS-GNIILTSGRD-NLHNLFDIRS 425 (510)
Q Consensus 351 ~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~i~~i~~~~~-~~~l~~~~~d-~~i~i~d~~~ 425 (510)
...|..++|...+ +.|++.+.||.+++||+|.......+.... ..+...++|++. -+++++-..| ..|.|.|++.
T Consensus 196 DKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~ 275 (364)
T KOG0290|consen 196 DKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV 275 (364)
T ss_pred CcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecC
Confidence 5679999999754 478899999999999999876554443322 267888999874 4577765555 5799999996
Q ss_pred -ceeeeEeecCCCeeecCceeEEEcCC-CCEEEEEcCCCeEEEEeCCCcc------eeecccccCcCEEEEEEeCC-CCc
Q 010470 426 -LEVCGSLRATGNRVASNWSRSCISPD-ESYVAAGSADGSVYIWSISKAD------IVRTLKEHTAPVLSCSWSGL-GKP 496 (510)
Q Consensus 426 -~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~-~~~ 496 (510)
..++..++.|...+.. ++|.|. +..|+++++|..+.|||+...- ++..+. -.+.|+.+.|++. +.+
T Consensus 276 P~tpva~L~~H~a~VNg----IaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dw 350 (364)
T KOG0290|consen 276 PCTPVARLRNHQASVNG----IAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDW 350 (364)
T ss_pred CCcceehhhcCcccccc----eEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCE
Confidence 4567778888777766 999995 5689999999999999987632 222222 4567999999965 446
Q ss_pred EEEeeC
Q 010470 497 LASADK 502 (510)
Q Consensus 497 l~s~~~ 502 (510)
++.+..
T Consensus 351 iai~~~ 356 (364)
T KOG0290|consen 351 IAICFG 356 (364)
T ss_pred EEEEec
Confidence 666643
No 202
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.80 E-value=2.4e-18 Score=158.64 Aligned_cols=239 Identities=20% Similarity=0.294 Sum_probs=175.2
Q ss_pred EecCCCEEEE--eeCCCeEEEEeCCC-Ccceec-cc--ccccceeEEEEec-CCCEEEEEeCCCeEEEEEcCCC------
Q 010470 233 FEYNSARLIS--GGQDKSIKLWDTNT-GSLSST-LY--GCLGSVLDLAITH-DNRSVIAASSSNNLYVWDVNSG------ 299 (510)
Q Consensus 233 ~s~~~~~l~s--~~~dg~i~iwd~~~-~~~~~~-~~--~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~------ 299 (510)
|+.+..++++ .|..|.|-||+++. |++... +. .....|+++.|.| |...|++++.||.|++|.+..+
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~ 666 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE 666 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc
Confidence 3334445543 45578999999864 333211 11 2356799999998 5678999999999999998754
Q ss_pred -CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcCCCCEEEEecCCCcEEE
Q 010470 300 -RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRL 377 (510)
Q Consensus 300 -~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i 377 (510)
.+...++.|...|+++.|+|.-.+.|+++++|.+|++||+.+++....+.+|. .|.+++|+|+|+.+++.+.||+|++
T Consensus 667 ~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rV 746 (1012)
T KOG1445|consen 667 MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRV 746 (1012)
T ss_pred CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEE
Confidence 35567889999999999999888999999999999999999998888887774 5999999999999999999999999
Q ss_pred EECCCCce-eeeecccccccEEEEEEcCCCCEEEEEecCC----cEEEEEcCCce--eeeEeecCCCeeecCceeEEEcC
Q 010470 378 WDIQTGKL-LSEVAAHSLAAVTSISLSRSGNIILTSGRDN----LHNLFDIRSLE--VCGSLRATGNRVASNWSRSCISP 450 (510)
Q Consensus 378 ~d~~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~----~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~s~ 450 (510)
|..+++.. +..-.+.....--.|.|--+|+++++.+.|. .|.+||..+.. .+.+......+ ......+.+
T Consensus 747 y~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap---s~LvP~YD~ 823 (1012)
T KOG1445|consen 747 YEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP---SPLVPHYDY 823 (1012)
T ss_pred eCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccC---ccccccccC
Confidence 99987653 3333333334455678888999999888764 68889877532 22222111111 011123566
Q ss_pred CCC-EEEEEcCCCeEEEEeCCCcce
Q 010470 451 DES-YVAAGSADGSVYIWSISKADI 474 (510)
Q Consensus 451 ~~~-~l~~~~~dg~i~iwd~~~~~~ 474 (510)
|.+ ++++|-.|..|++|.+-...+
T Consensus 824 Ds~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 824 DSNVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred CCceEEEecCCCceEEEEEecCCCc
Confidence 655 567888899999999865543
No 203
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.79 E-value=1.1e-15 Score=130.14 Aligned_cols=269 Identities=15% Similarity=0.252 Sum_probs=185.8
Q ss_pred eEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccc--eeEEEEecCCCEEE-EEeCC------CeEEEEEcCC
Q 010470 228 CASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGS--VLDLAITHDNRSVI-AASSS------NNLYVWDVNS 298 (510)
Q Consensus 228 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~-~~~~d------~~i~iwd~~~ 298 (510)
..+++|+.|...+++|..+| .+||+.+.-+.......+.+. +..+-| ..++++ +|+.+ +.|.|||-..
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEeccc
Confidence 44599999999999988776 899998875443332222222 222223 234444 34333 4899999766
Q ss_pred CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECC-CCeEeeeeeecCcee---EEEEcCCCCEEEE-ecCCC
Q 010470 299 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH-KGYCVNTIIFHSNCN---ALAFSMDGQTIFS-GHIDG 373 (510)
Q Consensus 299 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~i~---~i~~~~~~~~l~~-~~~dg 373 (510)
.+++.++. ...+|.++.+.+ ..|++.- .+.|+||... +.+.++.+....++. +++-+.+..+|+. |..-|
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred CcEEEEEE-eccceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence 77777776 678999999976 4455554 6799999987 445555554443332 3332223444543 56679
Q ss_pred cEEEEECCCCce--eeeecccccccEEEEEEcCCCCEEEEEecCCc-EEEEEcCCceeeeEeecCCCeeecCceeEEEcC
Q 010470 374 NLRLWDIQTGKL--LSEVAAHSLAAVTSISLSRSGNIILTSGRDNL-HNLFDIRSLEVCGSLRATGNRVASNWSRSCISP 450 (510)
Q Consensus 374 ~i~i~d~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 450 (510)
.|.|-|+...+. ...+..|. +.|.|++++-+|..+++++..|+ |+|||..++..+..++.... ...+.+++|||
T Consensus 160 qvQi~dL~~~~~~~p~~I~AH~-s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d--~A~iy~iaFSp 236 (346)
T KOG2111|consen 160 QVQIVDLASTKPNAPSIINAHD-SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVD--RADIYCIAFSP 236 (346)
T ss_pred eEEEEEhhhcCcCCceEEEccc-CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCc--hheEEEEEeCC
Confidence 999999976655 46666666 99999999999999999999995 89999999999988764433 34567799999
Q ss_pred CCCEEEEEcCCCeEEEEeCCCcceee------------------------cccccCcCEEEEEEeCCCCcEEEeeCCCeE
Q 010470 451 DESYVAAGSADGSVYIWSISKADIVR------------------------TLKEHTAPVLSCSWSGLGKPLASADKNGVV 506 (510)
Q Consensus 451 ~~~~l~~~~~dg~i~iwd~~~~~~~~------------------------~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i 506 (510)
++.+|++.|+.|+|+||.+.....-. .+.-..++..-++|..+.+.++..+.||..
T Consensus 237 ~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy 316 (346)
T KOG2111|consen 237 NSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSY 316 (346)
T ss_pred CccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcE
Confidence 99999999999999999876522110 011123455666777665667777777765
Q ss_pred E
Q 010470 507 C 507 (510)
Q Consensus 507 ~ 507 (510)
+
T Consensus 317 ~ 317 (346)
T KOG2111|consen 317 Y 317 (346)
T ss_pred E
Confidence 3
No 204
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=1.5e-16 Score=153.34 Aligned_cols=235 Identities=16% Similarity=0.131 Sum_probs=163.5
Q ss_pred CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe---CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCC
Q 010470 247 KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS---SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR 323 (510)
Q Consensus 247 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 323 (510)
..|.+||.+.... ..+..+...+.+.+|+|||+.|+..+ .+..|++|++.+++.... ....+.+..+.|+| ++.
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SP-DG~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSP-DGS 255 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECC-CCC
Confidence 3699999875543 34455667899999999999988765 245799999988764332 22333455689999 666
Q ss_pred EEEE-EeCCC--cEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCC-C--cEEEEECCCCceeeeecccccccE
Q 010470 324 HVVS-AAYDR--TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHID-G--NLRLWDIQTGKLLSEVAAHSLAAV 397 (510)
Q Consensus 324 ~l~s-~~~dg--~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~i 397 (510)
.|+. .+.+| .|++||+.++...........+....|+|||+.|+..+.+ | .|+++|+.++... .+.... ...
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~-~~~ 333 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEG-SQN 333 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCC-CCc
Confidence 6654 44455 5899999988766555455567889999999988766543 4 4555677666543 333322 445
Q ss_pred EEEEEcCCCCEEEEEecC---CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCe---EEEEeCCC
Q 010470 398 TSISLSRSGNIILTSGRD---NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGS---VYIWSISK 471 (510)
Q Consensus 398 ~~i~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~---i~iwd~~~ 471 (510)
....|+|+|++|+..+.+ ..|.+||+.++.... +.... .. ....|+|||++|+.++.++. +.++++ +
T Consensus 334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~~-~~----~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~ 406 (429)
T PRK03629 334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDTF-LD----ETPSIAPNGTMVIYSSSQGMGSVLNLVST-D 406 (429)
T ss_pred cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCCC-CC----CCceECCCCCEEEEEEcCCCceEEEEEEC-C
Confidence 678999999998876544 358889998776432 22211 11 12679999999999887764 677776 4
Q ss_pred cceeecccccCcCEEEEEEeCC
Q 010470 472 ADIVRTLKEHTAPVLSCSWSGL 493 (510)
Q Consensus 472 ~~~~~~~~~~~~~v~~~~~~~~ 493 (510)
|.....+..|.+.+...+|+|-
T Consensus 407 G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 407 GRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CCCeEECccCCCCcCCcccCCC
Confidence 6666777778888999999983
No 205
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.79 E-value=4.1e-19 Score=157.83 Aligned_cols=229 Identities=18% Similarity=0.250 Sum_probs=199.0
Q ss_pred ceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee
Q 010470 269 SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI 348 (510)
Q Consensus 269 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 348 (510)
....+.++.+|++++.|+..|.|..+|..++++...+. -...|.++.|.. +..+|+++- ...++|||- .|..+..+
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LH-neq~~AVAQ-K~y~yvYD~-~GtElHCl 206 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLH-NEQFFAVAQ-KKYVYVYDN-NGTELHCL 206 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhc-chHHHHhhh-hceEEEecC-CCcEEeeh
Confidence 44779999999999999999999999999999888876 457788999987 566666554 788999996 58889999
Q ss_pred eecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCcee
Q 010470 349 IFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV 428 (510)
Q Consensus 349 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 428 (510)
..+..+..+.|.|.--+|++++..|.+..-|+.+|+.+..+.... +.+..++-+|-+..+-+|..+|+|.+|...+.++
T Consensus 207 k~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~-G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP 285 (545)
T KOG1272|consen 207 KRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA-GRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP 285 (545)
T ss_pred hhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC-CccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence 999999999999999999999999999999999999999998877 8999999999999999999999999999999988
Q ss_pred eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEE
Q 010470 429 CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCV 508 (510)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i 508 (510)
+..+..|..++.+ +++.++|+|+++.+.|..++|||+.+...+.++.. ..+...+++|..| +++++....|.|
T Consensus 286 LvKiLcH~g~V~s----iAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~i 358 (545)
T KOG1272|consen 286 LVKILCHRGPVSS----IAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQI 358 (545)
T ss_pred HHHHHhcCCCcce----EEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeee
Confidence 8888888877766 99999999999999999999999999877666654 4567788898765 444455568888
Q ss_pred c
Q 010470 509 W 509 (510)
Q Consensus 509 w 509 (510)
|
T Consensus 359 w 359 (545)
T KOG1272|consen 359 W 359 (545)
T ss_pred e
Confidence 8
No 206
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.78 E-value=1.2e-17 Score=151.23 Aligned_cols=209 Identities=16% Similarity=0.214 Sum_probs=163.0
Q ss_pred CCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEE
Q 010470 237 SARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVD 316 (510)
Q Consensus 237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~ 316 (510)
...|+.+++||.+.|.+-. ++....+..|.+.+.+-.|+|||.-|++++.||.|++|. ++|-...++-....+|.|++
T Consensus 75 ~d~~~i~s~DGkf~il~k~-~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKS-ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred cceEEEEcCCceEEEeccc-chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEE
Confidence 3478888999999998754 777788899999999999999999999999999999998 67777777777788999999
Q ss_pred EecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccc
Q 010470 317 VSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLA 395 (510)
Q Consensus 317 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 395 (510)
|.|+.++.+++.+ +.+.|=.+.....+-....| +-|.++.|+|..+.+++|+.|-..++||. -|..+..-..+. .
T Consensus 153 W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~e-y 228 (737)
T KOG1524|consen 153 WAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEE-Y 228 (737)
T ss_pred ECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhc-c
Confidence 9996666666665 45555555544444444444 44899999999999999999999999996 677777666666 8
Q ss_pred cEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEe
Q 010470 396 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWS 468 (510)
Q Consensus 396 ~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd 468 (510)
+|++++|+|+ ..++.++.+ +.++- .+....+..++||+||..+++|+..|.+.+-.
T Consensus 229 ~ITSva~npd-~~~~v~S~n-t~R~~---------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 229 AITSVAFNPE-KDYLLWSYN-TARFS---------------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred ceeeeeeccc-cceeeeeee-eeeec---------------CCCccceEEEEEcCCCceeeccccCceEEEee
Confidence 9999999999 555655532 23311 11223344589999999999999999876543
No 207
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.77 E-value=8.8e-17 Score=136.66 Aligned_cols=237 Identities=16% Similarity=0.203 Sum_probs=177.7
Q ss_pred ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC---eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEEC-C
Q 010470 265 GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR---VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDL-H 340 (510)
Q Consensus 265 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~-~ 340 (510)
....+|+|.+|++|+..++++..+..|.||...... ..+++..|...|++++|+| ..+.|++|+.|..-++|.. .
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCC
Confidence 345789999999999999999999999999987654 6788999999999999999 8889999999999999998 4
Q ss_pred CCeEee---eeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCcee---eeecccccccEEEEEEcCCCCEEEEEec
Q 010470 341 KGYCVN---TIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL---SEVAAHSLAAVTSISLSRSGNIILTSGR 414 (510)
Q Consensus 341 ~~~~~~---~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 414 (510)
.++-.. .+......+++.|+|.++.|++|+....|.||-+.....- +.+..+..+.|++++|+|++-++++|+.
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~ 166 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST 166 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc
Confidence 444333 3345567999999999999999999999999887654322 2333344478999999999999999999
Q ss_pred CCcEEEEEcCCce--------------eeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc-eeeccc
Q 010470 415 DNLHNLFDIRSLE--------------VCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD-IVRTLK 479 (510)
Q Consensus 415 d~~i~i~d~~~~~--------------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~ 479 (510)
|+..+||..--.. +...+..........+..+.|+|+|..|+-.+.|+++.+-|..... .+..+.
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~ 246 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVA 246 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchh
Confidence 9999998642100 0000111111223345568999999999999999999999976654 344444
Q ss_pred ccCcCEEEEEEeCCCCcEEEeeCC
Q 010470 480 EHTAPVLSCSWSGLGKPLASADKN 503 (510)
Q Consensus 480 ~~~~~v~~~~~~~~~~~l~s~~~d 503 (510)
...-|..++.|-.+. .++.++.|
T Consensus 247 ~~~lP~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 247 TAQLPLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred hccCCceeeEeecCC-ceeecCCC
Confidence 334677788876543 34444444
No 208
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=4.3e-17 Score=142.00 Aligned_cols=247 Identities=13% Similarity=0.136 Sum_probs=185.9
Q ss_pred ecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC------CCeeEeec-CCCCceEEEEEecCCCCEEEEEeCCCc
Q 010470 261 STLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS------GRVRHTLT-GHTDKVCAVDVSKISSRHVVSAAYDRT 333 (510)
Q Consensus 261 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~-~~~~~v~~i~~~~~~~~~l~s~~~dg~ 333 (510)
+.+.+|.+.|.++.|+.++++|++|+.|..+++|++.. .+++.... .|...|.|++|.. .+.++++|+.+++
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCcce
Confidence 34568999999999999999999999999999999853 35555443 3568999999987 8889999999999
Q ss_pred EEEEECCCCeEeeeeeecC---ceeEEEEcCCCCEEEEecCCCcEEEEECCCCc-eeeee-cccccccEEEEEEcCCC-C
Q 010470 334 LKVWDLHKGYCVNTIIFHS---NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK-LLSEV-AAHSLAAVTSISLSRSG-N 407 (510)
Q Consensus 334 i~iwd~~~~~~~~~~~~~~---~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~-~~~~~~~i~~i~~~~~~-~ 407 (510)
|...|+.+.+.+..+.... .|..+..+|..+.|++.+.+|.|.+||.+... +...+ .........++-|+|.. .
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA 208 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence 9999999999888887664 69999999999999999999999999998654 22222 22223678889999965 4
Q ss_pred EEEEEecCCcEEEEEcCCceee-eEeecCC--CeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcce-eecccc---
Q 010470 408 IILTSGRDNLHNLFDIRSLEVC-GSLRATG--NRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADI-VRTLKE--- 480 (510)
Q Consensus 408 ~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~--~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~--- 480 (510)
+|++.+..+-+.+||.+..... ....... ..-...|..+.|+|+|+.+.+--....-.+||+.+..+ +..+..
T Consensus 209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~ 288 (609)
T KOG4227|consen 209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPN 288 (609)
T ss_pred eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCC
Confidence 6777888889999999864321 1111111 11123466688999999988776655666778776443 222221
Q ss_pred ---cCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 481 ---HTAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 481 ---~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
....+.+++|..|- .+++|+.+-.|++|
T Consensus 289 GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~W 319 (609)
T KOG4227|consen 289 GYCNIKTIKSMTFIDDY-TVATGSDHWGIHIW 319 (609)
T ss_pred cceeeeeeeeeeeecce-eeeccCcccceEEE
Confidence 12246778887664 49999999999999
No 209
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=4e-16 Score=134.83 Aligned_cols=277 Identities=17% Similarity=0.209 Sum_probs=180.3
Q ss_pred ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc-ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC----Ce
Q 010470 227 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY-GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG----RV 301 (510)
Q Consensus 227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~~ 301 (510)
.+..++|++.-..++++..|-.|++||-.. +....++ .....|++++|-|.+..-++.+..+-|.+|..... ..
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~ 178 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRN 178 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccc
Confidence 477789998777789999999999999876 3333333 44678999999998765554444556999986521 11
Q ss_pred ----------eEeecCCCCceEEEEEecCCCCEEEEEeC-CCcEEEEECCCCeEeeee-eecCceeEEEEcCCCCEEEEe
Q 010470 302 ----------RHTLTGHTDKVCAVDVSKISSRHVVSAAY-DRTLKVWDLHKGYCVNTI-IFHSNCNALAFSMDGQTIFSG 369 (510)
Q Consensus 302 ----------~~~~~~~~~~v~~i~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~ 369 (510)
+....+| .+|+++.|.+ ++..+++++. |..|.|||..++..+... ...+.+.-+.|+|||.+|+++
T Consensus 179 ~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA 256 (445)
T KOG2139|consen 179 IRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA 256 (445)
T ss_pred cccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence 1122344 7899999999 7888887775 678999999999887766 445668899999999999999
Q ss_pred cCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCcee---------------eeEe--
Q 010470 370 HIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV---------------CGSL-- 432 (510)
Q Consensus 370 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~---------------~~~~-- 432 (510)
+.|+..++|............... +.|...+|+|+|++|+..+... -.+|.+..... +..+
T Consensus 257 t~davfrlw~e~q~wt~erw~lgs-grvqtacWspcGsfLLf~~sgs-p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e 334 (445)
T KOG2139|consen 257 TCDAVFRLWQENQSWTKERWILGS-GRVQTACWSPCGSFLLFACSGS-PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQE 334 (445)
T ss_pred cccceeeeehhcccceecceeccC-CceeeeeecCCCCEEEEEEcCC-ceEEEEeecCCCccccCcccceeeeeeccchh
Confidence 999999999654433333333333 6899999999999776554332 22343321000 0000
Q ss_pred ---ecCCCeeecCceeEEEcCCCCEEEEEcCCC--------eEEEEeCCCcceeecc----cccCcCEEEEEEeC---CC
Q 010470 433 ---RATGNRVASNWSRSCISPDESYVAAGSADG--------SVYIWSISKADIVRTL----KEHTAPVLSCSWSG---LG 494 (510)
Q Consensus 433 ---~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg--------~i~iwd~~~~~~~~~~----~~~~~~v~~~~~~~---~~ 494 (510)
......+.....+++|+|.|.++++.-..+ .|.+||....-++.-. .+.. ....++|+| +|
T Consensus 335 ~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge-~P~~IsF~pl~n~g 413 (445)
T KOG2139|consen 335 VTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGE-YPAYISFGPLKNEG 413 (445)
T ss_pred hhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCC-CCceEEeeecccCC
Confidence 011111223455689999999999876543 3667776543322211 1111 134455554 34
Q ss_pred CcEEEeeCCCeEEEc
Q 010470 495 KPLASADKNGVVCVW 509 (510)
Q Consensus 495 ~~l~s~~~dg~i~iw 509 (510)
..|..+=..|.+.-|
T Consensus 414 ~lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 414 RLLSIAWSTGRIQRY 428 (445)
T ss_pred cEEEEEeccCceEee
Confidence 455555556665543
No 210
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.77 E-value=5e-17 Score=136.07 Aligned_cols=223 Identities=20% Similarity=0.266 Sum_probs=165.2
Q ss_pred EecccccccccccCCCccceeecc-ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc-eeccc-----cccccee
Q 010470 199 RRSEEGAEFFAESTVPSTCKHKIN-AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL-SSTLY-----GCLGSVL 271 (510)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~-----~~~~~v~ 271 (510)
.+|......-.....+..++..+. .|-|.|.|+.|.|++..+++-. |..|.+|++..+.. +..+. .+....+
T Consensus 96 aiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ft 174 (370)
T KOG1007|consen 96 AIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFT 174 (370)
T ss_pred EEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceec
Confidence 444433333333445567777776 6778999999999999998877 88999999987765 22221 3455677
Q ss_pred EEEEec--CCCEEEEEeCCCeEEEEEcCCCCeeEee-cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC-eEeee
Q 010470 272 DLAITH--DNRSVIAASSSNNLYVWDVNSGRVRHTL-TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG-YCVNT 347 (510)
Q Consensus 272 ~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~ 347 (510)
+-+|+| +++.++ ...|+++..||+++.+....+ ..|...|..+.|+|....+|++|+.||.|++||.+.- .++..
T Consensus 175 sg~WspHHdgnqv~-tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~e 253 (370)
T KOG1007|consen 175 SGAWSPHHDGNQVA-TTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQE 253 (370)
T ss_pred ccccCCCCccceEE-EeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccc
Confidence 889998 555554 456789999999988766665 4688899999999987889999999999999999854 56677
Q ss_pred eeecCc-eeEEEEcCC-CCEEEEecCCCcEEEEECCCCc-----------------------------eeeeeccccccc
Q 010470 348 IIFHSN-CNALAFSMD-GQTIFSGHIDGNLRLWDIQTGK-----------------------------LLSEVAAHSLAA 396 (510)
Q Consensus 348 ~~~~~~-i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~-----------------------------~~~~~~~~~~~~ 396 (510)
+..|+. +.++.|+|. ..+|++|+.|..|.+|...+-. .+.++..|. ..
T Consensus 254 l~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE-DS 332 (370)
T KOG1007|consen 254 LPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE-DS 332 (370)
T ss_pred cCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc-cc
Confidence 776654 999999994 5677799999999999653211 122334444 78
Q ss_pred EEEEEEcCCCCE-EEEEecCCcEEEEEcC
Q 010470 397 VTSISLSRSGNI-ILTSGRDNLHNLFDIR 424 (510)
Q Consensus 397 i~~i~~~~~~~~-l~~~~~d~~i~i~d~~ 424 (510)
|.+++|+.-..+ |++-+.||.+.|-.+.
T Consensus 333 VY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 333 VYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred eEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 999999986664 5667889988776554
No 211
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1e-16 Score=146.38 Aligned_cols=276 Identities=13% Similarity=0.109 Sum_probs=199.1
Q ss_pred cccceEEEEEecCCCEE-EEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCee
Q 010470 224 HEGGCASILFEYNSARL-ISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR 302 (510)
Q Consensus 224 h~~~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 302 (510)
|....+.|..+|||+|+ +||..--.|++||+.+..+...-......|.-.-++.|-..++.-..|.+|-+-.- .|...
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~G~hy 128 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YGRHY 128 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh-cCeee
Confidence 55667889999999986 67777889999999876654333333455665666666666777777777766542 22211
Q ss_pred EeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECC
Q 010470 303 HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQ 381 (510)
Q Consensus 303 ~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~ 381 (510)
.+. -...-..++++..+- -|++++....|+-+++..|..+..+... ..++++.+++-..+|++|+.+|.|.+||.+
T Consensus 129 -~~R-IP~~GRDm~y~~~sc-Dly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 129 -RTR-IPKFGRDMKYHKPSC-DLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred -eee-cCcCCccccccCCCc-cEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence 111 112234455655333 3555555778999999999999888776 569999999999999999999999999999
Q ss_pred CCceeeeecccc----------cccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCC
Q 010470 382 TGKLLSEVAAHS----------LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD 451 (510)
Q Consensus 382 ~~~~~~~~~~~~----------~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 451 (510)
+...+..+.... ...|+++.|+.+|-.+++|+.+|.+.|||++..+++..-.. ... .++..+.|.+.
T Consensus 206 ~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh-~~e--~pi~~l~~~~~ 282 (703)
T KOG2321|consen 206 DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDH-GYE--LPIKKLDWQDT 282 (703)
T ss_pred hhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeeccc-CCc--cceeeeccccc
Confidence 876665554321 12499999999999999999999999999999887655432 222 23344667554
Q ss_pred --CCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEE
Q 010470 452 --ESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCV 508 (510)
Q Consensus 452 --~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i 508 (510)
++.+++. +...++|||-.+|+....+.. ...++.+|+-|++.+++++..++.+..
T Consensus 283 ~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 283 DQQNKVVSM-DKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred CCCceEEec-chHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCccee
Confidence 3445543 456799999999999888764 445999999999999999988876643
No 212
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.76 E-value=8.7e-17 Score=134.82 Aligned_cols=236 Identities=16% Similarity=0.211 Sum_probs=169.6
Q ss_pred ccccceEEEEEecCCC-----EEEEeeCCCeEEEEeCCC--Ccc--eec-----ccccccceeEEEEec-CCCEEEEEeC
Q 010470 223 AHEGGCASILFEYNSA-----RLISGGQDKSIKLWDTNT--GSL--SST-----LYGCLGSVLDLAITH-DNRSVIAASS 287 (510)
Q Consensus 223 ~h~~~v~~~~~s~~~~-----~l~s~~~dg~i~iwd~~~--~~~--~~~-----~~~~~~~v~~~~~~~-~~~~l~~~~~ 287 (510)
.|.-+++.+.|.|+.. +|||++ ..+++|.+.. .+. ... -..+.+++++..|+. +-+++.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 5788999999999863 566654 4799999863 221 111 124567899999976 5567888899
Q ss_pred CCeEEEEEcCCCC---eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee----cCceeEEEEc
Q 010470 288 SNNLYVWDVNSGR---VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF----HSNCNALAFS 360 (510)
Q Consensus 288 d~~i~iwd~~~~~---~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~i~~i~~~ 360 (510)
|-+..|||++++. ....+-.|...|..++|...+.+.|++.|.||++++||++.-..-..+.. +.+...++|+
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN 251 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence 9999999999873 45667789999999999987778999999999999999986543322221 2346778888
Q ss_pred C-CCCEEEEec-CCCcEEEEECCCC-ceeeeecccccccEEEEEEcCC-CCEEEEEecCCcEEEEEcCCceeeeEe-ecC
Q 010470 361 M-DGQTIFSGH-IDGNLRLWDIQTG-KLLSEVAAHSLAAVTSISLSRS-GNIILTSGRDNLHNLFDIRSLEVCGSL-RAT 435 (510)
Q Consensus 361 ~-~~~~l~~~~-~dg~i~i~d~~~~-~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~ 435 (510)
+ |-+++++-. ....|.+.|+|.. .++..+..|. +.|+.|+|.|. ...|++++.|..+.+||+......... ...
T Consensus 252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~-a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQ-ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCc-ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 7 455666543 4457999999975 5677788887 99999999995 568999999999999999753320000 000
Q ss_pred CCeeecCceeEEEcC-CCCEEEEEcCC
Q 010470 436 GNRVASNWSRSCISP-DESYVAAGSAD 461 (510)
Q Consensus 436 ~~~~~~~~~~~~~s~-~~~~l~~~~~d 461 (510)
.......+..+.|++ .+.+|+++..+
T Consensus 331 ay~a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 331 AYTAGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred hhhccceeeeeeecccCCCEEEEEecC
Confidence 011122345588885 57778777643
No 213
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.76 E-value=1e-18 Score=165.80 Aligned_cols=237 Identities=22% Similarity=0.374 Sum_probs=190.6
Q ss_pred ceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEE
Q 010470 259 LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD 338 (510)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd 338 (510)
.+..+.+|.+.|+|+.|...|.++++|+.|..++||...++.+.....||.+.++.++++. ++.++++++.|..|++|-
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEe
Confidence 3556779999999999999999999999999999999999999999999999999999987 788899999999999999
Q ss_pred CCCCeEeeeeeecC-ceeEEEEcCCCCEEEEecCCCcEEEEECCCCcee---eeecccccccEEEEEEcCCCCEEEEEec
Q 010470 339 LHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL---SEVAAHSLAAVTSISLSRSGNIILTSGR 414 (510)
Q Consensus 339 ~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 414 (510)
+..+.++..+.++. .|++++|+|-. +.+.||++++||.+-.-.+ .........-+.++.|..++..+++++.
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC
Confidence 99999999998875 59999999965 7788999999998711111 1112222256788888889999999999
Q ss_pred CCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCC-CCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCC
Q 010470 415 DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD-ESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGL 493 (510)
Q Consensus 415 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 493 (510)
|+.-..|....... +...... +..+.+ ..+.++.-.+-.+++|++.+|..+..+.+|...+..+.++|-
T Consensus 337 d~ea~n~e~~~l~~------~~~~lif----~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpf 406 (1113)
T KOG0644|consen 337 DGEARNHEFEQLAW------RSNLLIF----VTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPF 406 (1113)
T ss_pred CcccccchhhHhhh------hccceEE----EeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCC
Confidence 99888876642111 1111000 111112 245666777888999999999999999999999999999998
Q ss_pred CCcE-EEeeCCCeEEEcC
Q 010470 494 GKPL-ASADKNGVVCVWT 510 (510)
Q Consensus 494 ~~~l-~s~~~dg~i~iwd 510 (510)
+..+ .+++.||...|||
T Consensus 407 n~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 407 NPRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred CcHhhhhccCCCceEeee
Confidence 7754 5899999999997
No 214
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=3.2e-16 Score=136.85 Aligned_cols=261 Identities=18% Similarity=0.195 Sum_probs=193.4
Q ss_pred cccceEEEEEecCCC--EEEEeeCCCeEEEEeCCCCcceec------ccccccceeEEEEecCCCEEEEEeCCCeEEEEE
Q 010470 224 HEGGCASILFEYNSA--RLISGGQDKSIKLWDTNTGSLSST------LYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD 295 (510)
Q Consensus 224 h~~~v~~~~~s~~~~--~l~s~~~dg~i~iwd~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 295 (510)
-...|+.++|.-+++ .+...+.|..+..+......+... .....++|..+... +..|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 345688888876554 455555677777777765554333 33445666666654 44688889999999999
Q ss_pred cCCCC----eeEeecCCCCceEEEEEecCCCCEEEEEeCC--CcEEEEECCCCeEeeeeeec----------CceeEEEE
Q 010470 296 VNSGR----VRHTLTGHTDKVCAVDVSKISSRHVVSAAYD--RTLKVWDLHKGYCVNTIIFH----------SNCNALAF 359 (510)
Q Consensus 296 ~~~~~----~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~----------~~i~~i~~ 359 (510)
...+. ....+..+ ..+..+.-++....++++||.. ..+.+||+...+.+..-... --++++.|
T Consensus 132 ~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred ccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 87432 23333322 5677777777677888889998 89999999988655543322 12678889
Q ss_pred cCC--CCEEEEecCCCcEEEEECCCC-ceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeE-eecC
Q 010470 360 SMD--GQTIFSGHIDGNLRLWDIQTG-KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGS-LRAT 435 (510)
Q Consensus 360 ~~~--~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~ 435 (510)
.+. ...|++++.-+.+++||++.+ +++..+.... .+++++...|+|+.+++|..-+.+..||++.+..... +.+.
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E-~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~ 289 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLE-NPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI 289 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccCcceeEecccc-CcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc
Confidence 887 789999999999999999876 4566666655 8999999999999999999999999999999887665 4444
Q ss_pred CCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCC
Q 010470 436 GNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGL 493 (510)
Q Consensus 436 ~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 493 (510)
.+ .+..+..+|.+.++++++-|..|+|+|+.+.+++...- -...++++-+.++
T Consensus 290 tG----sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 290 TG----SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred cC----CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence 44 34458899999999999999999999999977665443 2344567766554
No 215
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=2e-16 Score=152.91 Aligned_cols=219 Identities=16% Similarity=0.162 Sum_probs=151.8
Q ss_pred eeeccccccceEEEEEecCCCEEEEeeCC---CeEEEEeCCCCcc--eecccccccceeEEEEecCCCEEEEEe-CCCeE
Q 010470 218 KHKINAHEGGCASILFEYNSARLISGGQD---KSIKLWDTNTGSL--SSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNL 291 (510)
Q Consensus 218 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i 291 (510)
...+..|...+.+..|||||+.|+.++.+ ..|++||+.++.. +..+.++ ...++|+|||+.|++++ .+|.+
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~ 272 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVL 272 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcE
Confidence 45567788899999999999999887654 3699999988754 3333333 34689999999888765 57765
Q ss_pred EE--EEcCCCCeeEeecCCCCceEEEEEecCCCCEEE-EEeCCCcEEEEECCCC-eEeeeeeecCceeEEEEcCCCCEEE
Q 010470 292 YV--WDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVV-SAAYDRTLKVWDLHKG-YCVNTIIFHSNCNALAFSMDGQTIF 367 (510)
Q Consensus 292 ~i--wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~-s~~~dg~i~iwd~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~ 367 (510)
.| ||+.++. ...+..+...+....|+| ++..|+ ++..+|...+|++... .....+. +.. .+..|+|+|+.|+
T Consensus 273 ~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~-~~~-~~~~~SpDG~~ia 348 (429)
T PRK01742 273 NIYVMGANGGT-PSQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLVG-GRG-YSAQISADGKTLV 348 (429)
T ss_pred EEEEEECCCCC-eEeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEec-CCC-CCccCCCCCCEEE
Confidence 55 5665555 445666777788999999 666555 4446788888876432 2222222 222 4578999999998
Q ss_pred EecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC--CceeeeEeecCCCeeecCcee
Q 010470 368 SGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR--SLEVCGSLRATGNRVASNWSR 445 (510)
Q Consensus 368 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~ 445 (510)
.++.+ .+.+||+.++........ ....++.|+|+|++|+.++.++.+.+|++. ++.....+..+...+..
T Consensus 349 ~~~~~-~i~~~Dl~~g~~~~lt~~---~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~---- 420 (429)
T PRK01742 349 MINGD-NVVKQDLTSGSTEVLSST---FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKF---- 420 (429)
T ss_pred EEcCC-CEEEEECCCCCeEEecCC---CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCC----
Confidence 87765 466799988875432222 223567899999999999999988888763 46666666555443332
Q ss_pred EEEcCC
Q 010470 446 SCISPD 451 (510)
Q Consensus 446 ~~~s~~ 451 (510)
++|+|-
T Consensus 421 p~wsp~ 426 (429)
T PRK01742 421 PAWSPY 426 (429)
T ss_pred cccCCC
Confidence 667763
No 216
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=5.2e-16 Score=150.35 Aligned_cols=234 Identities=17% Similarity=0.190 Sum_probs=160.6
Q ss_pred CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCC---CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCC
Q 010470 247 KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS---NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR 323 (510)
Q Consensus 247 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 323 (510)
..|.+||.... ....+..+...+.+..|+|||+.|+.++.+ ..|++||+.+++... +..+.+...+..|+| ++.
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~Sp-DG~ 260 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSP-DGR 260 (433)
T ss_pred EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECC-CCC
Confidence 46999998644 445566677789999999999999988743 479999998876543 333444556789999 565
Q ss_pred EE-EEEeCCC--cEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEec-CCCc--EEEEECCCCceeeeecccccccE
Q 010470 324 HV-VSAAYDR--TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGH-IDGN--LRLWDIQTGKLLSEVAAHSLAAV 397 (510)
Q Consensus 324 ~l-~s~~~dg--~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~--i~i~d~~~~~~~~~~~~~~~~~i 397 (510)
.+ ++.+.+| .|++||+.++...............+|+|||+.|+.++ .+|. |+++|+.+++... +.... ...
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g-~~~ 338 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQG-NYN 338 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCC-CCc
Confidence 44 5556555 59999998887544333333356789999999888665 3444 7777876665433 22222 344
Q ss_pred EEEEEcCCCCEEEEEecCC---cEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC---CeEEEEeCCC
Q 010470 398 TSISLSRSGNIILTSGRDN---LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD---GSVYIWSISK 471 (510)
Q Consensus 398 ~~i~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~ 471 (510)
..++|+|+|++|+..+.++ .|.+||+.++... .+.. .... ....|+|||++|+..+.+ +.|+++++.
T Consensus 339 ~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~-~~~~----~~p~~spdG~~i~~~s~~~g~~~L~~~~~~- 411 (433)
T PRK04922 339 ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP-GSLD----ESPSFAPNGSMVLYATREGGRGVLAAVSTD- 411 (433)
T ss_pred cCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC-CCCC----CCceECCCCCEEEEEEecCCceEEEEEECC-
Confidence 5789999999998765443 6899999877654 2221 1111 126899999998876653 468888875
Q ss_pred cceeecccccCcCEEEEEEeC
Q 010470 472 ADIVRTLKEHTAPVLSCSWSG 492 (510)
Q Consensus 472 ~~~~~~~~~~~~~v~~~~~~~ 492 (510)
+.....+..+.+.+...+|+|
T Consensus 412 g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 412 GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCceEEcccCCCCCCCCccCC
Confidence 445555655667778888987
No 217
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.75 E-value=4e-16 Score=154.55 Aligned_cols=249 Identities=16% Similarity=0.206 Sum_probs=177.2
Q ss_pred CcceecccccccceeEEEEecCC-CEEEEEeCCCeEEEEEcCCC-------CeeEeecCCCCceEEEEEecCCCCEEEEE
Q 010470 257 GSLSSTLYGCLGSVLDLAITHDN-RSVIAASSSNNLYVWDVNSG-------RVRHTLTGHTDKVCAVDVSKISSRHVVSA 328 (510)
Q Consensus 257 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~ 328 (510)
|..+..+..|...+..++.++.. .++++|+.||+|++|+...- +...++......+.++...+ .++.++.+
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-~~~~~Av~ 1116 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-NGDQFAVS 1116 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-CCCeEEEE
Confidence 67788888999999999887766 99999999999999998631 23344444567889999988 78899999
Q ss_pred eCCCcEEEEECCCCe-------Eeeeeeec--Cc-eeEEEEcC-CCC-EEEEecCCCcEEEEECCCCceeeeecc--ccc
Q 010470 329 AYDRTLKVWDLHKGY-------CVNTIIFH--SN-CNALAFSM-DGQ-TIFSGHIDGNLRLWDIQTGKLLSEVAA--HSL 394 (510)
Q Consensus 329 ~~dg~i~iwd~~~~~-------~~~~~~~~--~~-i~~i~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~ 394 (510)
+.||.|.+.++.... +....... +. +..-++.. .+. .++.++..+.|..||+++......+.. .+
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h- 1195 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH- 1195 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc-
Confidence 999999999987521 11111111 22 22333322 233 677888899999999998776665543 33
Q ss_pred ccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCC---CCEEEE-Ec-CCCeEEEEeC
Q 010470 395 AAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD---ESYVAA-GS-ADGSVYIWSI 469 (510)
Q Consensus 395 ~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---~~~l~~-~~-~dg~i~iwd~ 469 (510)
+.|++++.+|.+++++.|+..|.+.+||+|-+.++..+..+.. .++..++.+|- ..+.++ |+ ..+-|.+|++
T Consensus 1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~---~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR---APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc---CCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 8899999999999999999999999999998887776654433 34444555543 344444 44 5778999999
Q ss_pred CCcceeeccccc-------------------CcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 470 SKADIVRTLKEH-------------------TAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 470 ~~~~~~~~~~~~-------------------~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
.+|..-..+... .-+...+.+...+..+.+|+.|+.|+.||
T Consensus 1273 ~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1273 ETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred ccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 987544433211 11122334444456899999999999998
No 218
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=2.2e-15 Score=146.17 Aligned_cols=234 Identities=14% Similarity=0.141 Sum_probs=160.7
Q ss_pred CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeC---CCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCC
Q 010470 247 KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS---SNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR 323 (510)
Q Consensus 247 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 323 (510)
..|.+||... .....+..+...+.+..|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+.+..|+| ++.
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SP-DG~ 258 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSP-DGR 258 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECC-CCC
Confidence 4788999864 444556678889999999999999888763 468999999888653 4455666778899999 565
Q ss_pred EE-EEEeCCCc--EEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecC-CC--cEEEEECCCCceeeeecccccccE
Q 010470 324 HV-VSAAYDRT--LKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI-DG--NLRLWDIQTGKLLSEVAAHSLAAV 397 (510)
Q Consensus 324 ~l-~s~~~dg~--i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~i 397 (510)
.| ++.+.++. |++||+.++................|+|||+.|+..+. +| .|+++|+..+... .+.... ..+
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~-~~~ 336 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGG-GRY 336 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCC-Ccc
Confidence 54 56665654 77889988766443333334667899999998886653 33 6888898665543 333322 456
Q ss_pred EEEEEcCCCCEEEEEecC---CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC------CeEEEEe
Q 010470 398 TSISLSRSGNIILTSGRD---NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD------GSVYIWS 468 (510)
Q Consensus 398 ~~i~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d------g~i~iwd 468 (510)
....|+|+|+.|+..+.+ ..|.+||+.++.. ..+... .. ...+.|+|||+.|+..+.+ ..++++|
T Consensus 337 ~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~-~~----~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~d 410 (435)
T PRK05137 337 STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSG-FL----VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVD 410 (435)
T ss_pred cCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCC-CC----CCCCeECCCCCEEEEEEccCCCCCcceEEEEE
Confidence 778899999999887654 3688888865443 222221 11 2337899999998765542 3588888
Q ss_pred CCCcceeecccccCcCEEEEEEeCC
Q 010470 469 ISKADIVRTLKEHTAPVLSCSWSGL 493 (510)
Q Consensus 469 ~~~~~~~~~~~~~~~~v~~~~~~~~ 493 (510)
+..+.. ..+. ..+.+...+|+|-
T Consensus 411 l~g~~~-~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 411 LTGRNE-REVP-TPGDASDPAWSPL 433 (435)
T ss_pred CCCCce-EEcc-CCCCccCcccCCC
Confidence 876554 3444 2445677788873
No 219
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=1.6e-15 Score=129.11 Aligned_cols=232 Identities=15% Similarity=0.257 Sum_probs=165.7
Q ss_pred ceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEE-EEEeCC------CcEEEEECCC
Q 010470 269 SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHV-VSAAYD------RTLKVWDLHK 341 (510)
Q Consensus 269 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l-~s~~~d------g~i~iwd~~~ 341 (510)
...+++|+.|..-++++..+| .+||+.+.-+....-..+.+.+.-+...- ..+++ ++||.+ +.|.|||-..
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf-R~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF-RSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh-hhceEEEecCCCCCCCCCceEEEEeccc
Confidence 345589999988888887766 89999876333222222222221111111 23343 344433 5799999888
Q ss_pred CeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECC-CCceeeeecccc-cccEEEEEEcCCCCEEEEE-ecCCcE
Q 010470 342 GYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQ-TGKLLSEVAAHS-LAAVTSISLSRSGNIILTS-GRDNLH 418 (510)
Q Consensus 342 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~-~~d~~i 418 (510)
.+++..+...++|.++.+.++ .|++.- .+.|+||... +.+.+..+.... .....+++-..+..+|+.- -.-|.|
T Consensus 85 ~~~i~el~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 85 ERCIIELSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred CcEEEEEEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 999999999999999999754 455554 4689999987 556666665432 2345445444444555553 355899
Q ss_pred EEEEcCCcee--eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCe-EEEEeCCCcceeecccc--cCcCEEEEEEeCC
Q 010470 419 NLFDIRSLEV--CGSLRATGNRVASNWSRSCISPDESYVAAGSADGS-VYIWSISKADIVRTLKE--HTAPVLSCSWSGL 493 (510)
Q Consensus 419 ~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~ 493 (510)
.|-|+...+. ...+..|...+.+ ++++.+|..+|++|..|+ |+|||..+|+.+..++. ....|.+++|||+
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iac----v~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIAC----VALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN 237 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeE----EEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC
Confidence 9999986554 4666677766654 999999999999999997 79999999999999865 3457999999999
Q ss_pred CCcEEEeeCCCeEEEc
Q 010470 494 GKPLASADKNGVVCVW 509 (510)
Q Consensus 494 ~~~l~s~~~dg~i~iw 509 (510)
+.+|+++|+-|+|.||
T Consensus 238 ~s~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 238 SSWLAVSSDKGTLHIF 253 (346)
T ss_pred ccEEEEEcCCCeEEEE
Confidence 9999999999999997
No 220
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=99.73 E-value=4e-17 Score=137.60 Aligned_cols=157 Identities=37% Similarity=0.470 Sum_probs=77.3
Q ss_pred HHHHHHHHhhhhhhhcccchhhHhhcCccc-----------------------------------cccccHHHHHHHHHH
Q 010470 12 KHALKALRKRHLVEEGAHAPAIIALSRPII-----------------------------------SQGSEWKEKADNLET 56 (510)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~l~~ 56 (510)
.+++.+|+.||+.| .+|.++|.+|++... .....+++++..++.
T Consensus 3 ~~il~~L~~Rd~~e-~~~~~li~ay~~L~d~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~ 81 (194)
T PF08614_consen 3 DEILAQLRERDRRE-KAFAELIDAYNRLADRTSLLKAENEQLQPEAESLPSSSSSSPSESGSVSSAQISSLEQKLAKLQE 81 (194)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 57899999999999 999999999988771 112256788999999
Q ss_pred HHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 57 ELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLE 136 (510)
Q Consensus 57 el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~ 136 (510)
||+++|+.++++.++|......+..++..+.+....|..++.++..++.++..+..++++..+.++.+++|+..++.++.
T Consensus 82 ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~ 161 (194)
T PF08614_consen 82 ELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLN 161 (194)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 010470 137 EMTMKAKNAEAENKMLVDRWMLQKMQDAERLNE 169 (510)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (510)
.++.++..++.+|..|++|||..++++++.||+
T Consensus 162 ~~e~k~~~l~~En~~Lv~Rwm~~k~~eAe~mN~ 194 (194)
T PF08614_consen 162 MLEEKLRKLEEENRELVERWMQRKAQEAERMNE 194 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999998874
No 221
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=1.8e-15 Score=146.12 Aligned_cols=234 Identities=18% Similarity=0.223 Sum_probs=155.2
Q ss_pred CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCC---CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCC
Q 010470 247 KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS---NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR 323 (510)
Q Consensus 247 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 323 (510)
..|.+||.. +.....+..+...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+..|+| ++.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SP-DG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSP-DGR 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECC-CCC
Confidence 467778874 44445556677889999999999999887743 469999999887543 333445567889999 665
Q ss_pred EE-EEEeCCCcEEEE--ECCCCeEeeeeeec-CceeEEEEcCCCCEEEEec-CCCcEEEE--ECCCCceeeeeccccccc
Q 010470 324 HV-VSAAYDRTLKVW--DLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGH-IDGNLRLW--DIQTGKLLSEVAAHSLAA 396 (510)
Q Consensus 324 ~l-~s~~~dg~i~iw--d~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~-~dg~i~i~--d~~~~~~~~~~~~~~~~~ 396 (510)
.| ++.+.+|...+| |+.++.. ..+..+ .......|+|||+.|+..+ .+|...+| ++.++... .+.... ..
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g-~~ 329 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGL-RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTG-SY 329 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCc-EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCC-CC
Confidence 55 466777775555 5554443 333332 3356788999999887654 34555555 44444432 222222 33
Q ss_pred EEEEEEcCCCCEEEEEecCC---cEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCC---eEEEEeCC
Q 010470 397 VTSISLSRSGNIILTSGRDN---LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADG---SVYIWSIS 470 (510)
Q Consensus 397 i~~i~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg---~i~iwd~~ 470 (510)
.....|+|+|++|+..+.++ .|.+||+.++........ . .. ....|+|||++|+..+.++ .+++.++
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~-~-~~----~~p~~spdg~~l~~~~~~~g~~~l~~~~~- 402 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT-T-RD----ESPSFAPNGRYILYATQQGGRSVLAAVSS- 402 (427)
T ss_pred cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC-C-Cc----cCceECCCCCEEEEEEecCCCEEEEEEEC-
Confidence 44678999999998877654 699999988765433221 1 11 2368999999988877543 3666666
Q ss_pred CcceeecccccCcCEEEEEEeCC
Q 010470 471 KADIVRTLKEHTAPVLSCSWSGL 493 (510)
Q Consensus 471 ~~~~~~~~~~~~~~v~~~~~~~~ 493 (510)
++.....+..+.+.+...+|+|-
T Consensus 403 ~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 403 DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCCceEEeecCCCCCCCCccCCC
Confidence 46666666667777888899874
No 222
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=6.6e-16 Score=150.71 Aligned_cols=247 Identities=19% Similarity=0.307 Sum_probs=176.2
Q ss_pred ccceEEEEEec--CCCEEEEeeCCCeEEEEeCC-CC----cceeccc-------ccccceeEEEEecCCCEEEEEeCCCe
Q 010470 225 EGGCASILFEY--NSARLISGGQDKSIKLWDTN-TG----SLSSTLY-------GCLGSVLDLAITHDNRSVIAASSSNN 290 (510)
Q Consensus 225 ~~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~-~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~ 290 (510)
...|+.+.+-. |..++++|+.||.|+||+-- ++ +.+.... +..+.-.-+.|.....+|++++.-..
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeE
Confidence 34688888865 45689999999999999742 22 2222111 11111134677777778888887889
Q ss_pred EEEEEcCCCCeeEeecC-CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe---EeeeeeecC---ceeEEEEcCCC
Q 010470 291 LYVWDVNSGRVRHTLTG-HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY---CVNTIIFHS---NCNALAFSMDG 363 (510)
Q Consensus 291 i~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~---~i~~i~~~~~~ 363 (510)
|+|||.....+...+.. ...-|+++.-+...++.+++|..||.|++||.+... .+.....|. +|..+.+.+.|
T Consensus 1189 IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred EEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCC
Confidence 99999988777776653 445677777766678999999999999999987543 344444442 37888888866
Q ss_pred CE-EEEecCCCcEEEEECCCCceee--eecccc--cccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCC--
Q 010470 364 QT-IFSGHIDGNLRLWDIQTGKLLS--EVAAHS--LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATG-- 436 (510)
Q Consensus 364 ~~-l~~~~~dg~i~i~d~~~~~~~~--~~~~~~--~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-- 436 (510)
-- |++|+.+|.|++||++...... .+..+. ++..+++..++....+++|+. +.|+||++... .+..++...
T Consensus 1269 ~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~-~l~~~k~n~~F 1346 (1387)
T KOG1517|consen 1269 LGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE-QLNIIKYNPGF 1346 (1387)
T ss_pred CcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh-hhcccccCccc
Confidence 54 9999999999999999852222 222221 235999999999999999998 99999998643 233333222
Q ss_pred -CeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc
Q 010470 437 -NRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD 473 (510)
Q Consensus 437 -~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 473 (510)
+.-....++++|+|.--.+++|+.|.+|.||......
T Consensus 1347 ~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1347 MGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 2222345779999999999999999999999876543
No 223
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.72 E-value=9.8e-15 Score=136.34 Aligned_cols=268 Identities=15% Similarity=0.064 Sum_probs=176.8
Q ss_pred EEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEec
Q 010470 240 LISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSK 319 (510)
Q Consensus 240 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 319 (510)
+++-..+|.|.|.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+++.+.++... ....++++++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~ 87 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSP 87 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcC
Confidence 345667899999999999999988765554456789999999999999999999999999999998754 4567899999
Q ss_pred CCCCEEEEE-eCCCcEEEEECCCCeEeeeeeec--------CceeEEEEcCCCCEEE-EecCCCcEEEEECCCCceeeee
Q 010470 320 ISSRHVVSA-AYDRTLKVWDLHKGYCVNTIIFH--------SNCNALAFSMDGQTIF-SGHIDGNLRLWDIQTGKLLSEV 389 (510)
Q Consensus 320 ~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~--------~~i~~i~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~ 389 (510)
++++++++ ...+.+.++|..+.+.++.+... +.+..+..+|....++ +.-..+.|.+.|....+.+..-
T Consensus 88 -DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~ 166 (369)
T PF02239_consen 88 -DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT 166 (369)
T ss_dssp -TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE
T ss_pred -CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee
Confidence 77777655 46899999999999998887643 2466787888888555 4455688999998776554332
Q ss_pred cccccccEEEEEEcCCCCEEEEE-ecCCcEEEEEcCCceeeeEeecCCCeeecCceeE-------EE--cCCCCEEEEEc
Q 010470 390 AAHSLAAVTSISLSRSGNIILTS-GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRS-------CI--SPDESYVAAGS 459 (510)
Q Consensus 390 ~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~--s~~~~~l~~~~ 459 (510)
............|+|++++++++ ..++.|.++|..+++.+..+.....+.......+ .| ...+...++.-
T Consensus 167 ~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~i 246 (369)
T PF02239_consen 167 TIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLI 246 (369)
T ss_dssp EEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEE
T ss_pred eecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccc
Confidence 22222678889999999987664 5667999999999888776654333322211111 12 12222322222
Q ss_pred CCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEe----eCCCeEEEcC
Q 010470 460 ADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASA----DKNGVVCVWT 510 (510)
Q Consensus 460 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~----~~dg~i~iwd 510 (510)
..+.+.+|+..+.+.+..+....++ ..+..+|+++++.+. ...+.|.++|
T Consensus 247 g~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD 300 (369)
T PF02239_consen 247 GTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVID 300 (369)
T ss_dssp E--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEE
T ss_pred cCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEE
Confidence 2345667888899999999877666 788999999999887 4447777765
No 224
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.72 E-value=1.7e-15 Score=130.09 Aligned_cols=280 Identities=15% Similarity=0.269 Sum_probs=189.1
Q ss_pred cceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc-----ceecccccc------------cceeEEEEecCCC--EEEEEe
Q 010470 226 GGCASILFEYNSARLISGGQDKSIKLWDTNTGS-----LSSTLYGCL------------GSVLDLAITHDNR--SVIAAS 286 (510)
Q Consensus 226 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~--~l~~~~ 286 (510)
.-|.+|.|+..|.+|+||..+|.|.+|.-.... ....+..|. ..|..+.|.++++ .++..+
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 458999999999999999999999999754322 223333342 3678899988764 577888
Q ss_pred CCCeEEEEEcCCCC-----------------------------------eeEee-cCCCCceEEEEEecCCCCEEEEEeC
Q 010470 287 SSNNLYVWDVNSGR-----------------------------------VRHTL-TGHTDKVCAVDVSKISSRHVVSAAY 330 (510)
Q Consensus 287 ~d~~i~iwd~~~~~-----------------------------------~~~~~-~~~~~~v~~i~~~~~~~~~l~s~~~ 330 (510)
.|.+|++|.+.... +.+.+ ..|+-.|.++.++. +...++++.
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lSAD- 183 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLSAD- 183 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEeecc-
Confidence 99999999875321 01111 35778889999987 777777776
Q ss_pred CCcEEEEECCCC-eEeeee--eec------CceeEEEEcC-CCCEEEEecCCCcEEEEECCCCcee----eee-------
Q 010470 331 DRTLKVWDLHKG-YCVNTI--IFH------SNCNALAFSM-DGQTIFSGHIDGNLRLWDIQTGKLL----SEV------- 389 (510)
Q Consensus 331 dg~i~iwd~~~~-~~~~~~--~~~------~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~----~~~------- 389 (510)
|-.|.+|++.-. +....+ ... .-|++..|+| ..+.++-.+..|+|++.|++....- ..+
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 889999998632 222221 221 1278999999 4567777888999999999843211 011
Q ss_pred ----cccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC-CceeeeEeecCCCee-----------ecCceeEEEcCCCC
Q 010470 390 ----AAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR-SLEVCGSLRATGNRV-----------ASNWSRSCISPDES 453 (510)
Q Consensus 390 ----~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~-----------~~~~~~~~~s~~~~ 453 (510)
...-...|..+.|+++|+|+++-+. -+|++||+. ..+++.++..|.... ...-..++|+.++.
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~ 342 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS 342 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc
Confidence 1111256889999999999987543 589999994 566666665543211 11223478999999
Q ss_pred EEEEEcCCCeEEEEeCCCccee--------------ec------cc-c-c------------CcCEEEEEEeCCCCcEEE
Q 010470 454 YVAAGSADGSVYIWSISKADIV--------------RT------LK-E-H------------TAPVLSCSWSGLGKPLAS 499 (510)
Q Consensus 454 ~l~~~~~dg~i~iwd~~~~~~~--------------~~------~~-~-~------------~~~v~~~~~~~~~~~l~s 499 (510)
++++|+.+..+++|++..|... .. .. + + ...+...+|+|..+.++.
T Consensus 343 ~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~ 422 (433)
T KOG1354|consen 343 YVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAV 422 (433)
T ss_pred eEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccceeee
Confidence 9999999999999996543210 00 00 0 0 112456689999988888
Q ss_pred eeCCCeEEEc
Q 010470 500 ADKNGVVCVW 509 (510)
Q Consensus 500 ~~~dg~i~iw 509 (510)
+..+ .+++|
T Consensus 423 aatn-nlyif 431 (433)
T KOG1354|consen 423 AATN-NLYIF 431 (433)
T ss_pred eecC-ceEEe
Confidence 7665 45554
No 225
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.72 E-value=6.8e-15 Score=125.71 Aligned_cols=272 Identities=15% Similarity=0.205 Sum_probs=191.6
Q ss_pred cceEEEEEecCCCEEEE-eeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEE-EEeCCCeEEEEEcCCCCeeE
Q 010470 226 GGCASILFEYNSARLIS-GGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVI-AASSSNNLYVWDVNSGRVRH 303 (510)
Q Consensus 226 ~~v~~~~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~ 303 (510)
..|.-+.|..|.-++++ ...++.|.+|++...+-...+.....++.+++|+|||+.++ +...+-.|.+|.+.+.+...
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 46888899988877655 45688999999988887788888889999999999996555 55578899999998766443
Q ss_pred eecCCCCceEEEEEecCCCCEEEEEeC------------------------------------CCcEEEEECCCCeEeee
Q 010470 304 TLTGHTDKVCAVDVSKISSRHVVSAAY------------------------------------DRTLKVWDLHKGYCVNT 347 (510)
Q Consensus 304 ~~~~~~~~v~~i~~~~~~~~~l~s~~~------------------------------------dg~i~iwd~~~~~~~~~ 347 (510)
++-....+..++|+| ++.+.+.++. +..+.+||.--...+..
T Consensus 129 -~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 129 -LPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred -ecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence 232344567788888 6666655432 12345555433333334
Q ss_pred eeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCcee-----------------------------------------
Q 010470 348 IIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL----------------------------------------- 386 (510)
Q Consensus 348 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----------------------------------------- 386 (510)
+...-++..+.|+|.++++++|+.|+.+++.+--+-++.
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 444456889999999999999999999887643211100
Q ss_pred -------------------eeec-----ccccccEEEEEEcCCCCEEEEEecC--CcEEEEEcCCceeeeEeecCCCeee
Q 010470 387 -------------------SEVA-----AHSLAAVTSISLSRSGNIILTSGRD--NLHNLFDIRSLEVCGSLRATGNRVA 440 (510)
Q Consensus 387 -------------------~~~~-----~~~~~~i~~i~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~ 440 (510)
..++ .....++.-++|++|..++++-.+. +.+.+||+++.+....+... .+
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk-~p-- 363 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQK-HP-- 363 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhc-cc--
Confidence 0000 0112356678999999998886544 67999999987664444322 22
Q ss_pred cCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCe
Q 010470 441 SNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGV 505 (510)
Q Consensus 441 ~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~ 505 (510)
+....|+|....|+.+.....+++|.......+.. +...-.|..+.|.-+|..++.++.|..
T Consensus 364 --iraf~WdP~~prL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 364 --IRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred --eeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence 33378999988888888888899999765444433 334467999999999999999998854
No 226
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.9e-16 Score=143.96 Aligned_cols=217 Identities=22% Similarity=0.352 Sum_probs=159.2
Q ss_pred ecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee-cCCCCceEEEEEecC-CCCEEEEEeCCCcEEEEE
Q 010470 261 STLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL-TGHTDKVCAVDVSKI-SSRHVVSAAYDRTLKVWD 338 (510)
Q Consensus 261 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~-~~~~l~s~~~dg~i~iwd 338 (510)
..+.||.+.|.++.|+.+|.+|++|+.|-.+.|||.-..++++.+ ++|...|.++.|.|. ++.++++|..|..|++||
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 568899999999999999999999999999999999888888777 589999999999996 456788999999999999
Q ss_pred CCCC----------eEeeeeeec-CceeEEEEcCCC-CEEEEecCCCcEEEEECCCCceeee-------ec--ccccccE
Q 010470 339 LHKG----------YCVNTIIFH-SNCNALAFSMDG-QTIFSGHIDGNLRLWDIQTGKLLSE-------VA--AHSLAAV 397 (510)
Q Consensus 339 ~~~~----------~~~~~~~~~-~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~-------~~--~~~~~~i 397 (510)
+... .....+..+ ..|..++..|++ +.+.+++.||+|+-||++....-.. +. ....-..
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 9742 122233333 347888889988 7888999999999999987432111 11 0111357
Q ss_pred EEEEEcCC-CCEEEEEecCCcEEEEEcCCc--------e----------eeeEeec-CC----C---eeecCceeEEEcC
Q 010470 398 TSISLSRS-GNIILTSGRDNLHNLFDIRSL--------E----------VCGSLRA-TG----N---RVASNWSRSCISP 450 (510)
Q Consensus 398 ~~i~~~~~-~~~l~~~~~d~~i~i~d~~~~--------~----------~~~~~~~-~~----~---~~~~~~~~~~~s~ 450 (510)
.++.++|. ..+|++|+.|-..++||.+.. . .+..+.. +. . ......+.+.|+|
T Consensus 204 k~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnp 283 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNP 283 (758)
T ss_pred eeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECC
Confidence 78999996 458899999999999995421 1 0111111 11 0 0011134578999
Q ss_pred CCCEEEEEcCCCeEEEEeCCCcceeec
Q 010470 451 DESYVAAGSADGSVYIWSISKADIVRT 477 (510)
Q Consensus 451 ~~~~l~~~~~dg~i~iwd~~~~~~~~~ 477 (510)
+|.-|.+.-....|++||+..++....
T Consensus 284 NGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 284 NGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred CCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 998877766666799999988765433
No 227
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=3.1e-15 Score=129.43 Aligned_cols=228 Identities=16% Similarity=0.267 Sum_probs=159.2
Q ss_pred cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecC-CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC----
Q 010470 268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTG-HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG---- 342 (510)
Q Consensus 268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~---- 342 (510)
..+..++|++.-..++++..|..|++|+-.+ +....++. ....|+|++|-|.....|+.|+. +.|.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccc
Confidence 4567789998777788999999999999765 44444442 45679999999988888888884 56999976421
Q ss_pred eE----------eeeeeecCceeEEEEcCCCCEEEEec-CCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEE
Q 010470 343 YC----------VNTIIFHSNCNALAFSMDGQTIFSGH-IDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILT 411 (510)
Q Consensus 343 ~~----------~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 411 (510)
.. +....++..|+++.|.+||..+++++ .+..|.|||..++..+....... +.++-+.|||||.+|++
T Consensus 177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~gl-gg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGL-GGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCC-CceeeEEEcCCCCEEEE
Confidence 11 11223345699999999999999876 46789999999887665443332 78999999999999999
Q ss_pred EecCCcEEEEEcCC-ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc---------------ee
Q 010470 412 SGRDNLHNLFDIRS-LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD---------------IV 475 (510)
Q Consensus 412 ~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---------------~~ 475 (510)
+.-|+..++|.... .....-.-+.+ .+. ..+|+|+|.+|...+. |.-.+|.+.... ++
T Consensus 256 At~davfrlw~e~q~wt~erw~lgsg-rvq----tacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lli 329 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWILGSG-RVQ----TACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLI 329 (445)
T ss_pred ecccceeeeehhcccceecceeccCC-cee----eeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeee
Confidence 99999999995543 33222222222 333 3789999998765543 233444432110 11
Q ss_pred eccc------c---cCcCEEEEEEeCCCCcEEEeeCCC
Q 010470 476 RTLK------E---HTAPVLSCSWSGLGKPLASADKNG 504 (510)
Q Consensus 476 ~~~~------~---~~~~v~~~~~~~~~~~l~s~~~dg 504 (510)
..+. + ..+++.+++|.|.|.+|++.-..+
T Consensus 330 aDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 330 ADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred ccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 1111 1 246789999999999999865543
No 228
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.71 E-value=2.7e-16 Score=130.14 Aligned_cols=225 Identities=21% Similarity=0.284 Sum_probs=165.5
Q ss_pred HHhhhhcCCceEEecccccccccccCCCccceeecc-ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCccee----
Q 010470 187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKIN-AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSS---- 261 (510)
Q Consensus 187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~---- 261 (510)
+.+..+...|.+..|..... .....++ .|...|+.+.--|+ ..+.+-+.|+.+.+|++.-+..+.
T Consensus 26 ~rL~sg~~~G~V~~w~lqt~---------r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si 95 (323)
T KOG0322|consen 26 ERLMSGLSVGIVKMWVLQTE---------RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSI 95 (323)
T ss_pred hhhhcccccceEEEEEeecC---------ccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeee
Confidence 34667788899999985442 2333455 45668888888886 578888899999999886422110
Q ss_pred ----------ccc---------------------------------------ccccceeEEEEec-CCC--EEEEEeCCC
Q 010470 262 ----------TLY---------------------------------------GCLGSVLDLAITH-DNR--SVIAASSSN 289 (510)
Q Consensus 262 ----------~~~---------------------------------------~~~~~v~~~~~~~-~~~--~l~~~~~d~ 289 (510)
.+. +..+.+.+..+.. +++ ++++|..+|
T Consensus 96 ~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsg 175 (323)
T KOG0322|consen 96 VVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESG 175 (323)
T ss_pred eccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCC
Confidence 000 0012333433321 222 456677899
Q ss_pred eEEEEEcCCCC----------eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC--eEe--eeee-ecCce
Q 010470 290 NLYVWDVNSGR----------VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG--YCV--NTII-FHSNC 354 (510)
Q Consensus 290 ~i~iwd~~~~~----------~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~--~~~~-~~~~i 354 (510)
.|.+||+.++. .......|..+|.++.+.+ .-..=++|+.+..+..|++... .+. ..+. .+..+
T Consensus 176 hvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv 254 (323)
T KOG0322|consen 176 HVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGV 254 (323)
T ss_pred eEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCccccceeeeeccccCcccccceEEecCCCc
Confidence 99999999873 3344557999999999987 4555677888888999988643 211 1111 23458
Q ss_pred eEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEc
Q 010470 355 NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDI 423 (510)
Q Consensus 355 ~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~ 423 (510)
..+.+-||++.+++++.||.|+||..++..++..+..|. ..|++++|+|+..++++++.|++|.+|++
T Consensus 255 ~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHs-agvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 255 SGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHS-AGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhh-cceeEEEeCCCCchhhhccCCceEEeeec
Confidence 899999999999999999999999999999999999998 99999999999999999999999999986
No 229
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.70 E-value=4.5e-15 Score=127.62 Aligned_cols=248 Identities=15% Similarity=0.291 Sum_probs=190.0
Q ss_pred ccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEe-CCCCcceeccc-ccccceeEEEEecCCCEEEEEeCCCeEE
Q 010470 215 STCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWD-TNTGSLSSTLY-GCLGSVLDLAITHDNRSVIAASSSNNLY 292 (510)
Q Consensus 215 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 292 (510)
+.....++||...|+....-|...-+++.+.|.+++||- .+.++.-..+. ....+++++.+.++...|++|-.+|++.
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 346678899999999999999888999999999999994 45555433332 3467889999999999999999999999
Q ss_pred EEEcC----CCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEE
Q 010470 293 VWDVN----SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFS 368 (510)
Q Consensus 293 iwd~~----~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 368 (510)
-+.+. .....+.+..|...|..+-|+- ....+++.+.|..+.-.-.+.+..+..+......+++.+.-. +.+.
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fv 170 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFV 170 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEe
Confidence 88764 3345667778999999999987 788999999998887776777766666555544444444333 6667
Q ss_pred ecCCCcEEEEEC--CCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCcee-eeEeecCCCeeecCcee
Q 010470 369 GHIDGNLRLWDI--QTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV-CGSLRATGNRVASNWSR 445 (510)
Q Consensus 369 ~~~dg~i~i~d~--~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~ 445 (510)
|...|.|....+ ..-.++.++.++. +.+.+++|.|....+++|..|..+.+||+...+- ...+.++...+..
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~-~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~---- 245 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHT-GEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQA---- 245 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcc-cceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhh----
Confidence 877787766554 3456677777777 9999999999999999999999999999975433 2333444444433
Q ss_pred EEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470 446 SCISPDESYVAAGSADGSVYIWSIS 470 (510)
Q Consensus 446 ~~~s~~~~~l~~~~~dg~i~iwd~~ 470 (510)
++..+--+.+.+++.||.|.+|+++
T Consensus 246 l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 246 LSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred hhhhhhheeeeeccCCCeEEEEecc
Confidence 4555666788899999999999986
No 230
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1.2e-14 Score=132.96 Aligned_cols=269 Identities=13% Similarity=0.201 Sum_probs=172.0
Q ss_pred cceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-----C-----CCeEEEEE
Q 010470 226 GGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-----S-----SNNLYVWD 295 (510)
Q Consensus 226 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~-----d~~i~iwd 295 (510)
.+++..++|++|++++.+. +..++|++..++..+.+.... .+.++.|+|-|.+|.+-- . .-.+.+|+
T Consensus 35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 3477888999998887765 668999999888644443332 789999999999887631 1 23578999
Q ss_pred cCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCC--EEEE-----
Q 010470 296 VNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQ--TIFS----- 368 (510)
Q Consensus 296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~--~l~~----- 368 (510)
+.++.....+......-++..|++ +.. +++--..+.+.+|++.+.+.+..-.....++.+.++|.+. .+++
T Consensus 112 vet~~~~s~~q~k~Q~~W~~qfs~-dEs-l~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~ 189 (566)
T KOG2315|consen 112 VETGVQRSQIQKKMQNGWVPQFSI-DES-LAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEK 189 (566)
T ss_pred eccceehhheehhhhcCccccccc-chh-hhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCC
Confidence 998655555543333336777776 332 2222234677777776543332222233455555554311 1111
Q ss_pred ecCCCc---------------------------------------------------------EEEEECCCCceeeeecc
Q 010470 369 GHIDGN---------------------------------------------------------LRLWDIQTGKLLSEVAA 391 (510)
Q Consensus 369 ~~~dg~---------------------------------------------------------i~i~d~~~~~~~~~~~~ 391 (510)
++.-+. ++++++....... ..
T Consensus 190 kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V--~L 267 (566)
T KOG2315|consen 190 KGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSV--PL 267 (566)
T ss_pred CCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEE--ec
Confidence 122223 4444433112222 22
Q ss_pred cccccEEEEEEcCCCCEEEE--EecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC---CCeEEE
Q 010470 392 HSLAAVTSISLSRSGNIILT--SGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA---DGSVYI 466 (510)
Q Consensus 392 ~~~~~i~~i~~~~~~~~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---dg~i~i 466 (510)
...++|.++.|+|+|+-+++ |-.-..+.|||++..- +..+. .++- +++-|+|.|++|+.++. -|.|-|
T Consensus 268 ~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~-v~df~--egpR----N~~~fnp~g~ii~lAGFGNL~G~mEv 340 (566)
T KOG2315|consen 268 LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP-VFDFP--EGPR----NTAFFNPHGNIILLAGFGNLPGDMEV 340 (566)
T ss_pred CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE-eEeCC--CCCc----cceEECCCCCEEEEeecCCCCCceEE
Confidence 22389999999999986655 4456789999997543 33332 1222 23789999999887765 489999
Q ss_pred EeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeC------CCeEEEcC
Q 010470 467 WSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADK------NGVVCVWT 510 (510)
Q Consensus 467 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------dg~i~iwd 510 (510)
||+.+.+.+..+.... -+-+.|+|||.+|+|+.. |+.++||+
T Consensus 341 wDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 341 WDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred EeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 9999998888887544 356799999999998875 67788884
No 231
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=2.3e-14 Score=138.18 Aligned_cols=221 Identities=16% Similarity=0.151 Sum_probs=146.3
Q ss_pred eeccccccceEEEEEecCCCEEEEee---CCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEE-eCCC--eEE
Q 010470 219 HKINAHEGGCASILFEYNSARLISGG---QDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAA-SSSN--NLY 292 (510)
Q Consensus 219 ~~~~~h~~~v~~~~~s~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~--~i~ 292 (510)
..+..+...+.+.+|||||+.|+..+ .+..|.+|++.+++... +....+.+..+.|+|||+.|+.. +.+| .|+
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~ 270 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 270 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEE
Confidence 34455667899999999999988654 24579999998875422 22223344578999999988865 3344 599
Q ss_pred EEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeC-CC--cEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEe
Q 010470 293 VWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY-DR--TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSG 369 (510)
Q Consensus 293 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 369 (510)
+||+.+++.... ..+...+....|+| +++.|+..+. ++ .|.++|+.++................|+|||++|+..
T Consensus 271 ~~d~~tg~~~~l-t~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~ 348 (429)
T PRK03629 271 VMDLASGQIRQV-TDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMV 348 (429)
T ss_pred EEECCCCCEEEc-cCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEE
Confidence 999988776543 33445678899999 7777766554 34 4555577766543332223345678999999998865
Q ss_pred cCC---CcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCc---EEEEEcCCceeeeEeecCCCeeecCc
Q 010470 370 HID---GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNL---HNLFDIRSLEVCGSLRATGNRVASNW 443 (510)
Q Consensus 370 ~~d---g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~---i~i~d~~~~~~~~~~~~~~~~~~~~~ 443 (510)
+.+ ..|++||+.++... .+... .......|+|||+.|+.++.++. +.++++. +.....+..+...+..
T Consensus 349 ~~~~g~~~I~~~dl~~g~~~-~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~-- 422 (429)
T PRK03629 349 SSNGGQQHIAKQDLATGGVQ-VLTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKF-- 422 (429)
T ss_pred EccCCCceEEEEECCCCCeE-EeCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCCCcCC--
Confidence 433 35888999877643 33322 23446789999999999887764 6667764 4334444443333322
Q ss_pred eeEEEcC
Q 010470 444 SRSCISP 450 (510)
Q Consensus 444 ~~~~~s~ 450 (510)
.+|+|
T Consensus 423 --p~Wsp 427 (429)
T PRK03629 423 --PAWSP 427 (429)
T ss_pred --cccCC
Confidence 55665
No 232
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.68 E-value=4.1e-13 Score=125.95 Aligned_cols=269 Identities=17% Similarity=0.248 Sum_probs=174.7
Q ss_pred EEEeeCC----CeEEEEeC--CCCcce--ecccccccceeEEEEecCCCEEEEEeC----CCeEEEEEcCCC--C--eeE
Q 010470 240 LISGGQD----KSIKLWDT--NTGSLS--STLYGCLGSVLDLAITHDNRSVIAASS----SNNLYVWDVNSG--R--VRH 303 (510)
Q Consensus 240 l~s~~~d----g~i~iwd~--~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~--~--~~~ 303 (510)
+++|+.. +.|.+|++ .+++.. .. .........++++|++++|+++.. ++.|..|.+... . .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~-~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQT-VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEE-EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeee-ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 3445544 67888877 444432 22 223456677999999999999986 569999998764 3 333
Q ss_pred eecCCCCceEEEEEecCCCCEEEEEe-CCCcEEEEECCC-CeEeee---ee-----------ecCceeEEEEcCCCCEEE
Q 010470 304 TLTGHTDKVCAVDVSKISSRHVVSAA-YDRTLKVWDLHK-GYCVNT---II-----------FHSNCNALAFSMDGQTIF 367 (510)
Q Consensus 304 ~~~~~~~~v~~i~~~~~~~~~l~s~~-~dg~i~iwd~~~-~~~~~~---~~-----------~~~~i~~i~~~~~~~~l~ 367 (510)
.........+.++++| ++.+++++. .+|.|.++++.. |..... +. ....+.++.++|+|++++
T Consensus 81 ~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~ 159 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVY 159 (345)
T ss_dssp EEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEE
T ss_pred eeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEE
Confidence 3443455667899999 666666665 589999999986 443322 21 113378999999999888
Q ss_pred Eec-CCCcEEEEECCCCc--e--eeeecccccccEEEEEEcCCCCEEEEEe-cCCcEEEEEcC--Cce--eeeEeecC--
Q 010470 368 SGH-IDGNLRLWDIQTGK--L--LSEVAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDIR--SLE--VCGSLRAT-- 435 (510)
Q Consensus 368 ~~~-~dg~i~i~d~~~~~--~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~--~~~--~~~~~~~~-- 435 (510)
+.. ....|.+|++.... . ...+........+.+.|+|+++++++.+ .++.|.+|++. ++. ....+...
T Consensus 160 v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 160 VPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE 239 (345)
T ss_dssp EEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred EEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence 753 34579999987654 2 2334444447899999999999886655 56789999988 332 23333221
Q ss_pred CCeeecCceeEEEcCCCCEEEEEc-CCCeEEEEeCCC--cc--eeecccccCcCEEEEEEeCCCCcEEEee-CCCeEEEc
Q 010470 436 GNRVASNWSRSCISPDESYVAAGS-ADGSVYIWSISK--AD--IVRTLKEHTAPVLSCSWSGLGKPLASAD-KNGVVCVW 509 (510)
Q Consensus 436 ~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~iw 509 (510)
..........+.++|||++|+++. ..++|.+|++.. +. .+..+.........++++|+|++|++++ .++.|.+|
T Consensus 240 ~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf 319 (345)
T PF10282_consen 240 GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVF 319 (345)
T ss_dssp TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEE
Confidence 111111345688999999988765 467899999842 33 2333443344589999999999888776 56678877
Q ss_pred C
Q 010470 510 T 510 (510)
Q Consensus 510 d 510 (510)
+
T Consensus 320 ~ 320 (345)
T PF10282_consen 320 D 320 (345)
T ss_dssp E
T ss_pred E
Confidence 3
No 233
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=7.7e-15 Score=128.33 Aligned_cols=238 Identities=14% Similarity=0.202 Sum_probs=180.1
Q ss_pred cccceeEEEEecCCC--EEEEEeCCCeEEEEEcCCCCeeEe------ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEE
Q 010470 266 CLGSVLDLAITHDNR--SVIAASSSNNLYVWDVNSGRVRHT------LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 337 (510)
Q Consensus 266 ~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~------~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iw 337 (510)
-...|+.++|..++. .++..+.+..+..+.+....+... ......+|.++... +..|++|-.+|.+.+|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~---dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA---DGTLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc---CCEEEEEecCCcEEEE
Confidence 345677788865554 344444666777777665554333 23445666666553 4678888889999999
Q ss_pred ECCCC----eEeeeeeecCceeEEEEcCCCCE-EEEecCC--CcEEEEECCCCceeeeecccc--------cccEEEEEE
Q 010470 338 DLHKG----YCVNTIIFHSNCNALAFSMDGQT-IFSGHID--GNLRLWDIQTGKLLSEVAAHS--------LAAVTSISL 402 (510)
Q Consensus 338 d~~~~----~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~d--g~i~i~d~~~~~~~~~~~~~~--------~~~i~~i~~ 402 (510)
....+ ..+..+..+.++..+.-++...+ +++|+.. ..+.+||+...+.+..-.... .-.++++.|
T Consensus 131 ~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred eccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 98743 24445555666777777775554 4558887 789999998886665544322 135788899
Q ss_pred cCC--CCEEEEEecCCcEEEEEcCC-ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeec-c
Q 010470 403 SRS--GNIILTSGRDNLHNLFDIRS-LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRT-L 478 (510)
Q Consensus 403 ~~~--~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~ 478 (510)
-+. ...|++++.-+.+++||.+. .+++..|....+++. ++...|+|++|++|..-|.+..||++.++.... +
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is----~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~ 286 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPIS----STGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL 286 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcce----eeeecCCCcEEEEecccchhheecccCceeecccc
Confidence 887 88999999999999999986 455666666555544 488999999999999999999999999998877 8
Q ss_pred cccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 479 KEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 479 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
++..++|.++..+|.+++|++||-|..|+|+|
T Consensus 287 kg~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 287 KGITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred CCccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 88999999999999999999999999999987
No 234
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.9e-14 Score=130.64 Aligned_cols=243 Identities=13% Similarity=0.202 Sum_probs=181.2
Q ss_pred cccccc--ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 010470 221 INAHEG--GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS 298 (510)
Q Consensus 221 ~~~h~~--~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 298 (510)
|.-|.. .|.-.-++.|-..++.-..|.+|.+...........++ ..-.+++++.-..-|++++....|+-++++.
T Consensus 88 FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP---~~GRDm~y~~~scDly~~gsg~evYRlNLEq 164 (703)
T KOG2321|consen 88 FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIP---KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQ 164 (703)
T ss_pred eeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecC---cCCccccccCCCccEEEeecCcceEEEEccc
Confidence 444532 45555556665666666667777765433211111111 1224566665555567777777899999999
Q ss_pred CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc------------eeEEEEcCCCCEE
Q 010470 299 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN------------CNALAFSMDGQTI 366 (510)
Q Consensus 299 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------------i~~i~~~~~~~~l 366 (510)
|..+..+....+.++++.+++ ...+|++|+.+|.|-.||.++...+.++..... |+++.|+.+|-.+
T Consensus 165 GrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~ 243 (703)
T KOG2321|consen 165 GRFLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHV 243 (703)
T ss_pred cccccccccccccceeeeecC-ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeE
Confidence 999999988889999999999 788999999999999999998777666654332 8999999899999
Q ss_pred EEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCC-EEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCcee
Q 010470 367 FSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGN-IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSR 445 (510)
Q Consensus 367 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 445 (510)
++|+.+|.+.|||++..+++..-......+|..+.|.+.+. --+++.....++|||-.+++....+..... +..
T Consensus 244 aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~-----lND 318 (703)
T KOG2321|consen 244 AVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSD-----LND 318 (703)
T ss_pred EeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccccCC-----cCc
Confidence 99999999999999999988776666567999999987632 233444567899999999988776654433 444
Q ss_pred EEEcCCCCEEEEEcCCCeEEEEeCCCc
Q 010470 446 SCISPDESYVAAGSADGSVYIWSISKA 472 (510)
Q Consensus 446 ~~~s~~~~~l~~~~~dg~i~iwd~~~~ 472 (510)
+|+-|++.+++++..++.+..|-+..-
T Consensus 319 ~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 319 FCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred eeeecCCceEEEecCCCcceeEEcccc
Confidence 899999999999999998888876653
No 235
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=2.8e-14 Score=138.27 Aligned_cols=204 Identities=16% Similarity=0.150 Sum_probs=141.4
Q ss_pred ceeeccccccceEEEEEecCCCEEEEeeCC---CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEE-EeCCC--e
Q 010470 217 CKHKINAHEGGCASILFEYNSARLISGGQD---KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIA-ASSSN--N 290 (510)
Q Consensus 217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~--~ 290 (510)
....+..|...+.+.+|+|||+.|+.++.+ ..|.+||+.++.... +....+...++.|+|||+.++. .+.+| .
T Consensus 195 ~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~ 273 (433)
T PRK04922 195 NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPE 273 (433)
T ss_pred CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCce
Confidence 445566777889999999999999887643 469999998876532 3333445567899999998764 44554 6
Q ss_pred EEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEe-CCCc--EEEEECCCCeEeeeeeecCceeEEEEcCCCCEEE
Q 010470 291 LYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAA-YDRT--LKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIF 367 (510)
Q Consensus 291 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~-~dg~--i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 367 (510)
|++||+.+++.. .+..+........|+| ++..++.++ .+|. |+++|+.++...............+|+|+|++|+
T Consensus 274 Iy~~d~~~g~~~-~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 274 IYVMDLGSRQLT-RLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIA 351 (433)
T ss_pred EEEEECCCCCeE-ECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEE
Confidence 999999887654 4555555567789999 677666555 3444 7777877765433322223345789999999998
Q ss_pred EecCCC---cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC---CcEEEEEcCCc
Q 010470 368 SGHIDG---NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD---NLHNLFDIRSL 426 (510)
Q Consensus 368 ~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i~i~d~~~~ 426 (510)
..+.++ .|.+||+.++... .+... .......|+|||++++..+.+ +.+.++++...
T Consensus 352 ~~~~~~~~~~I~v~d~~~g~~~-~Lt~~--~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 352 MVHGSGGQYRIAVMDLSTGSVR-TLTPG--SLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred EEECCCCceeEEEEECCCCCeE-ECCCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 754333 5999999877654 33322 234567899999988776653 35777777543
No 236
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=8.3e-14 Score=135.25 Aligned_cols=203 Identities=20% Similarity=0.191 Sum_probs=140.2
Q ss_pred CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeC---CCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCE
Q 010470 289 NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY---DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQT 365 (510)
Q Consensus 289 ~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~ 365 (510)
..|.+||.. +.....+..|...+.+..|+| +++.|+..+. +..|.+||+.++...........+....|+|||+.
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCE
Confidence 378899875 445556677888999999999 6777776653 46899999998876544334455678899999998
Q ss_pred EE-EecCCCc--EEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEec-CC--cEEEEEcCCceeeeEeecCCCee
Q 010470 366 IF-SGHIDGN--LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR-DN--LHNLFDIRSLEVCGSLRATGNRV 439 (510)
Q Consensus 366 l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~ 439 (510)
|+ +.+.+|. |++||+.++... .+..+. .......|+|||+.|+..+. +| .|+++|+.++....... ....
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~-~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~-~~~~- 335 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTT-RLTDSP-AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF-GGGR- 335 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceE-EccCCC-CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec-CCCc-
Confidence 76 4455554 888898877653 344333 45677899999998887664 33 68888887665433322 2211
Q ss_pred ecCceeEEEcCCCCEEEEEcCC---CeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeC
Q 010470 440 ASNWSRSCISPDESYVAAGSAD---GSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADK 502 (510)
Q Consensus 440 ~~~~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 502 (510)
.....|+|||++|+..+.+ ..|.+||+.++.. ..+.. ...+..+.|+|||+.|+..+.
T Consensus 336 ---~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 336 ---YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred ---ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCCEEEEEEc
Confidence 2236799999999876543 3688889765543 33322 234678899999998876544
No 237
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.65 E-value=9e-14 Score=135.26 Aligned_cols=232 Identities=18% Similarity=0.181 Sum_probs=154.7
Q ss_pred CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCC---CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCC
Q 010470 247 KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS---NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR 323 (510)
Q Consensus 247 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 323 (510)
..|.++|..... ...+..+...+....|+|||++|+.++.+ ..|++||+.+++... +..+...+.++.|+| +++
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~sp-Dg~ 246 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSP-DGS 246 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECC-CCC
Confidence 468888876443 34555666778899999999999987754 489999998876543 333556677789999 565
Q ss_pred EE-EEEeCCC--cEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecC-CC--cEEEEECCCCceeeeecccccccE
Q 010470 324 HV-VSAAYDR--TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI-DG--NLRLWDIQTGKLLSEVAAHSLAAV 397 (510)
Q Consensus 324 ~l-~s~~~dg--~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~i 397 (510)
.| ++.+.++ .|++||+.++................|+|+|+.|+..+. +| .|+++|+.+++.. .+.... ..+
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~-~~~ 324 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRG-GYN 324 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCC-CCc
Confidence 55 4555444 589999987765443333333456789999998876543 33 5888898776643 333232 556
Q ss_pred EEEEEcCCCCEEEEEecCC---cEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCC---eEEEEeCCC
Q 010470 398 TSISLSRSGNIILTSGRDN---LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADG---SVYIWSISK 471 (510)
Q Consensus 398 ~~i~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg---~i~iwd~~~ 471 (510)
..+.|+|+|++++.++.++ .|.+||+.++.... +..... . ....|+|+|++|+..+.++ .+++.+..
T Consensus 325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~-~----~~p~~spdg~~l~~~~~~~~~~~l~~~~~~- 397 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDTGL-D----ESPSFAPNGRMILYATTRGGRGVLGLVSTD- 397 (417)
T ss_pred cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCCCC-C----CCceECCCCCEEEEEEeCCCcEEEEEEECC-
Confidence 7889999999999888776 78899988754422 222111 1 1257999999988877654 45565643
Q ss_pred cceeecccccCcCEEEEEE
Q 010470 472 ADIVRTLKEHTAPVLSCSW 490 (510)
Q Consensus 472 ~~~~~~~~~~~~~v~~~~~ 490 (510)
+.....+..+.+.+..++|
T Consensus 398 g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 398 GRFRARLPLGNGDVREPAW 416 (417)
T ss_pred CceeeECCCCCCCcCCCCC
Confidence 4444555444555555555
No 238
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=9.2e-14 Score=134.56 Aligned_cols=234 Identities=15% Similarity=0.155 Sum_probs=152.7
Q ss_pred eEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCC---CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCE
Q 010470 248 SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS---NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRH 324 (510)
Q Consensus 248 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 324 (510)
.|.++|...... ..+..+...+.+..|+|||+.|+..+.+ ..|++||+.+++... +....+......|+| +++.
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSP-DG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSP-DGKK 275 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECC-CCCE
Confidence 677778765433 4455667788999999999998877543 368999998876533 222233345688999 5665
Q ss_pred E-EEEeCCCc--EEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecC-CC--cEEEEECCCCceeeeecccccccEE
Q 010470 325 V-VSAAYDRT--LKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI-DG--NLRLWDIQTGKLLSEVAAHSLAAVT 398 (510)
Q Consensus 325 l-~s~~~dg~--i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~i~ 398 (510)
| ++.+.+|. |++||+.++...............+|+|||+.|+..+. +| .|+++|+.+++... +.... ....
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g-~~~~ 353 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEG-EQNL 353 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCC-CCCc
Confidence 5 45566664 88889987765443333344677899999998876543 33 47777887776433 22221 2334
Q ss_pred EEEEcCCCCEEEEEecC-C--cEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC-C--eEEEEeCCCc
Q 010470 399 SISLSRSGNIILTSGRD-N--LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD-G--SVYIWSISKA 472 (510)
Q Consensus 399 ~i~~~~~~~~l~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~~ 472 (510)
...|+|+|++|+..+.+ + .|.++|+.++.... +.... ... ...|+|||+.|+..+.+ | .+++++. +|
T Consensus 354 ~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~-~d~----~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G 426 (448)
T PRK04792 354 GGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTR-LDE----SPSVAPNGTMVIYSTTYQGKQVLAAVSI-DG 426 (448)
T ss_pred CeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCC-CCC----CceECCCCCEEEEEEecCCceEEEEEEC-CC
Confidence 57899999998876653 3 45667887766432 22111 111 24799999988775543 3 3777786 56
Q ss_pred ceeecccccCcCEEEEEEeCC
Q 010470 473 DIVRTLKEHTAPVLSCSWSGL 493 (510)
Q Consensus 473 ~~~~~~~~~~~~v~~~~~~~~ 493 (510)
.....+..+.+.+...+|+|-
T Consensus 427 ~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 427 RFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred CceEECcCCCCCcCCCccCCC
Confidence 666666666667788899873
No 239
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=2.2e-13 Score=132.56 Aligned_cols=234 Identities=16% Similarity=0.175 Sum_probs=155.1
Q ss_pred eEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCC---CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCE
Q 010470 248 SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS---NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRH 324 (510)
Q Consensus 248 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 324 (510)
.|.++|.+.+. ...+..+...+....|+|||+.|+..+.+ ..|++|++.+++... +....+.+....|+| +++.
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~Sp-DG~~ 256 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSP-DGSK 256 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECC-CCCE
Confidence 47788887554 34555667788999999999999877643 379999998886543 333344455789999 6665
Q ss_pred EE-EEeCCC--cEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecC-CC--cEEEEECCCCceeeeecccccccEE
Q 010470 325 VV-SAAYDR--TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI-DG--NLRLWDIQTGKLLSEVAAHSLAAVT 398 (510)
Q Consensus 325 l~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~i~ 398 (510)
|+ +.+.+| .|++||+.++................|+|||+.|+..+. +| .|+++|+.+++..... ... ....
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~-~~~~ 334 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVG-NYNA 334 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCC-CCcc
Confidence 54 555555 688889988765443333334567889999998775543 33 5888888777643322 221 3344
Q ss_pred EEEEcCCCCEEEEEecC-C--cEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC---CeEEEEeCCCc
Q 010470 399 SISLSRSGNIILTSGRD-N--LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD---GSVYIWSISKA 472 (510)
Q Consensus 399 ~i~~~~~~~~l~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~ 472 (510)
...|+|+|+.++..+.+ + .|.+||+.++.... +... .... ...|+|||+.++..+.+ ..|+++++. +
T Consensus 335 ~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~-~~~~----~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g 407 (430)
T PRK00178 335 RPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDT-SLDE----SPSVAPNGTMLIYATRQQGRGVLMLVSIN-G 407 (430)
T ss_pred ceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCC-CCCC----CceECCCCCEEEEEEecCCceEEEEEECC-C
Confidence 57899999999877654 3 58889998776432 2211 1111 25799999998876653 357777875 4
Q ss_pred ceeecccccCcCEEEEEEeCC
Q 010470 473 DIVRTLKEHTAPVLSCSWSGL 493 (510)
Q Consensus 473 ~~~~~~~~~~~~v~~~~~~~~ 493 (510)
.....+..+.+.+...+|+|-
T Consensus 408 ~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 408 RVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CceEECcCCCCCcCCCccCCC
Confidence 444445555566778888874
No 240
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=9e-14 Score=134.28 Aligned_cols=205 Identities=19% Similarity=0.234 Sum_probs=136.1
Q ss_pred CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCC---CcEEEEECCCCeEeeeeeecCceeEEEEcCCCCE
Q 010470 289 NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD---RTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQT 365 (510)
Q Consensus 289 ~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~ 365 (510)
..|.++|.. +.....+..+...+.+.+|+| +++.|+..+.+ ..|.+||+.++.............+..|+|||+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence 467777764 555555666788899999999 77777766542 4599999998876544334455678999999998
Q ss_pred EE-EecCCCcEEEE--ECCCCceeeeecccccccEEEEEEcCCCCEEEEEec-CCcEEEEEc--CCceeeeEeecCCCee
Q 010470 366 IF-SGHIDGNLRLW--DIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR-DNLHNLFDI--RSLEVCGSLRATGNRV 439 (510)
Q Consensus 366 l~-~~~~dg~i~i~--d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~~i~i~d~--~~~~~~~~~~~~~~~~ 439 (510)
|+ +.+.+|...+| |+..+. ...+..+. ....+..|+|||+.|+..+. +|...+|.+ .++...... ......
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~-~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~ 330 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSS-GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYN 330 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCC-CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCc
Confidence 87 45667765555 554444 44444433 45667889999998876654 455556554 444332222 121111
Q ss_pred ecCceeEEEcCCCCEEEEEcCCC---eEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCC
Q 010470 440 ASNWSRSCISPDESYVAAGSADG---SVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNG 504 (510)
Q Consensus 440 ~~~~~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 504 (510)
....|+|||++|+..+.++ .|++||+.+++...... + .......|+|||+.|+.++.++
T Consensus 331 ----~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~-~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 331 ----TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-T-TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred ----CceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-C-CCccCceECCCCCEEEEEEecC
Confidence 1368999999998776554 69999998876543322 2 2346789999999887766543
No 241
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.62 E-value=4.6e-12 Score=115.51 Aligned_cols=257 Identities=12% Similarity=0.089 Sum_probs=169.2
Q ss_pred CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeC----------CCeEEEEEcCCCCeeEeecCCCC------
Q 010470 247 KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS----------SNNLYVWDVNSGRVRHTLTGHTD------ 310 (510)
Q Consensus 247 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~------ 310 (510)
++|.+.|..+++.+..+.....+- .+ ++||++.++++.. +..|.+||..+++.+..+.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 899999999999888887544333 34 9999999988876 67999999999999988874222
Q ss_pred -ceEEEEEecCCCCEEEEEe-C-CCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCC-Ccee
Q 010470 311 -KVCAVDVSKISSRHVVSAA-Y-DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQT-GKLL 386 (510)
Q Consensus 311 -~v~~i~~~~~~~~~l~s~~-~-dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~ 386 (510)
....+.++| ++++++... . +..|.+.|+.+++.+..+..+....-...+++..++. +.||......+.+ |+..
T Consensus 105 ~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~--~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 105 TYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMH--CRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred CccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEE--eecCceEEEEecCCCceE
Confidence 234688898 777777554 4 7999999999999999888765433333333333222 2344444433322 2211
Q ss_pred -eeecc--cccccE-EEEEEcC-CCCEEEEEecCCcEEEEEcCC-----ceeeeEeecC---CCeeecCceeEEEcCCCC
Q 010470 387 -SEVAA--HSLAAV-TSISLSR-SGNIILTSGRDNLHNLFDIRS-----LEVCGSLRAT---GNRVASNWSRSCISPDES 453 (510)
Q Consensus 387 -~~~~~--~~~~~i-~~i~~~~-~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~~---~~~~~~~~~~~~~s~~~~ 453 (510)
..... ....++ ..-.|.+ +|.+++++.. |.|.+.|+.. ......+... .......+..++++|+|+
T Consensus 182 ~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~ 260 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD 260 (352)
T ss_pred EeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC
Confidence 11010 000000 0003455 8888887777 9999999643 2222222211 122333445589999999
Q ss_pred EEEEEc----------CCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCC-cEEEee-CCCeEEEcC
Q 010470 454 YVAAGS----------ADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGK-PLASAD-KNGVVCVWT 510 (510)
Q Consensus 454 ~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~-~dg~i~iwd 510 (510)
.+++.. ..+.|.++|..+++.+..+.. ...+.+++++||++ .|++.+ .++.|.++|
T Consensus 261 ~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 261 RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 888743 124799999999999988874 34789999999999 777655 577788765
No 242
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.62 E-value=5.3e-12 Score=118.43 Aligned_cols=261 Identities=16% Similarity=0.238 Sum_probs=169.5
Q ss_pred ccceEEEEEecCCCEEEEeeC----CCeEEEEeCCCC--cc--eecccccccceeEEEEecCCCEEEEEe-CCCeEEEEE
Q 010470 225 EGGCASILFEYNSARLISGGQ----DKSIKLWDTNTG--SL--SSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWD 295 (510)
Q Consensus 225 ~~~v~~~~~s~~~~~l~s~~~----dg~i~iwd~~~~--~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd 295 (510)
......++++|++++|++... +|.|..|.+... .+ +............++++|++++|+++. .+|.|.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 345677899999999988876 578999988653 33 333333445667899999999999998 488999999
Q ss_pred cCC-CCeeEe---ec----------CCCCceEEEEEecCCCCEEEEEe-CCCcEEEEECCCCe--Eee--e--eeecCce
Q 010470 296 VNS-GRVRHT---LT----------GHTDKVCAVDVSKISSRHVVSAA-YDRTLKVWDLHKGY--CVN--T--IIFHSNC 354 (510)
Q Consensus 296 ~~~-~~~~~~---~~----------~~~~~v~~i~~~~~~~~~l~s~~-~dg~i~iwd~~~~~--~~~--~--~~~~~~i 354 (510)
+.. +..... +. .......++.++| +++++++.. ....|.+|++.... ... . +.....+
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP 194 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGP 194 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSE
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCC
Confidence 987 432222 21 1234578899999 667666653 34689999987654 322 2 2334568
Q ss_pred eEEEEcCCCCEEEEe-cCCCcEEEEECC--CCce--eeeeccc-----ccccEEEEEEcCCCCEEEEEec-CCcEEEEEc
Q 010470 355 NALAFSMDGQTIFSG-HIDGNLRLWDIQ--TGKL--LSEVAAH-----SLAAVTSISLSRSGNIILTSGR-DNLHNLFDI 423 (510)
Q Consensus 355 ~~i~~~~~~~~l~~~-~~dg~i~i~d~~--~~~~--~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~-d~~i~i~d~ 423 (510)
..+.|+|+++++++. ..++.|.+|++. ++.. +..+... .......|.++|+|++|+++.. .+.|.+|++
T Consensus 195 Rh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 195 RHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp EEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred cEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence 999999999988754 567789999987 4422 2222211 1126889999999999888764 468999999
Q ss_pred C--Cc--eeeeEeecCCCeeecCceeEEEcCCCCEEEEEc-CCCeEEEEeCC--Ccceeeccc-ccCcCEEEEEE
Q 010470 424 R--SL--EVCGSLRATGNRVASNWSRSCISPDESYVAAGS-ADGSVYIWSIS--KADIVRTLK-EHTAPVLSCSW 490 (510)
Q Consensus 424 ~--~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~--~~~~~~~~~-~~~~~v~~~~~ 490 (510)
. ++ ..+..+...+.. ...+.++|+|++|++++ .++.|.+|+++ +|.+...-. ..-....||.|
T Consensus 275 d~~~g~l~~~~~~~~~G~~----Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 275 DPATGTLTLVQTVPTGGKF----PRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp CTTTTTEEEEEEEEESSSS----EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred ecCCCceEEEEEEeCCCCC----ccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 3 23 333344332222 23488999999998876 46789999764 555443322 12344566665
No 243
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.5e-14 Score=130.04 Aligned_cols=251 Identities=18% Similarity=0.281 Sum_probs=186.4
Q ss_pred eecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee-cCCCCceEEEEEecC-CCCEEEEEeCCCcEEEE
Q 010470 260 SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL-TGHTDKVCAVDVSKI-SSRHVVSAAYDRTLKVW 337 (510)
Q Consensus 260 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~-~~~~l~s~~~dg~i~iw 337 (510)
...+..|.+.|..+.|+..|..+++|+.|..|.+||...++....+ .+|...|....|.|. +...+++++.||.+++=
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 3557799999999999999999999999999999999988876666 579999988888886 34678999999999987
Q ss_pred ECC-CCeEeee---eeecCceeEEEEcCCC-CEEEEecCCCcEEEEECCCCceeeeecc--cccc---cEEEEEEcCCCC
Q 010470 338 DLH-KGYCVNT---IIFHSNCNALAFSMDG-QTIFSGHIDGNLRLWDIQTGKLLSEVAA--HSLA---AVTSISLSRSGN 407 (510)
Q Consensus 338 d~~-~~~~~~~---~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~---~i~~i~~~~~~~ 407 (510)
.+. ++.+..+ ..+.+.+.-++.-|+. ..|.+++.|+.+.-+|++.+.+...+.. .... ....|+..|...
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 764 3333322 2344668889998855 4677999999999999998765544432 1112 577889999665
Q ss_pred -EEEEEecCCcEEEEEcCCcee------eeEeecCCC--eeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC--c----
Q 010470 408 -IILTSGRDNLHNLFDIRSLEV------CGSLRATGN--RVASNWSRSCISPDESYVAAGSADGSVYIWSISK--A---- 472 (510)
Q Consensus 408 -~l~~~~~d~~i~i~d~~~~~~------~~~~~~~~~--~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~---- 472 (510)
.+++++.|..+++||.+.... +..+..+.. .....+++++++.++.-+.+.-.|-.|++|+-.- |
T Consensus 295 ~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~ 374 (559)
T KOG1334|consen 295 NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPD 374 (559)
T ss_pred cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCC
Confidence 889999999999999885332 222222211 2223577899998777777777777899995332 2
Q ss_pred ------ceeec-ccccCc--CEEEEE-EeCCCCcEEEeeCCCeEEEcC
Q 010470 473 ------DIVRT-LKEHTA--PVLSCS-WSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 473 ------~~~~~-~~~~~~--~v~~~~-~~~~~~~l~s~~~dg~i~iwd 510 (510)
..+.. +++|.+ .|.++- |.|...++++|+.-|.|.||+
T Consensus 375 ~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 375 PSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred CCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence 12223 677754 466775 568889999999999999996
No 244
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.60 E-value=1.8e-13 Score=116.13 Aligned_cols=156 Identities=19% Similarity=0.328 Sum_probs=113.9
Q ss_pred EEEEEecCCCEEEEeeC----------CCeEEEEeCCC-Ccceeccc-ccccceeEEEEecCCCEEEEEe--CCCeEEEE
Q 010470 229 ASILFEYNSARLISGGQ----------DKSIKLWDTNT-GSLSSTLY-GCLGSVLDLAITHDNRSVIAAS--SSNNLYVW 294 (510)
Q Consensus 229 ~~~~~s~~~~~l~s~~~----------dg~i~iwd~~~-~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iw 294 (510)
..+.|+|+|++|+.-.. -|...+|.++. +.....+. ...++|.+++|+|+|+.+++.. .++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 35788999987755433 13455555522 23334443 2345799999999999876653 56799999
Q ss_pred EcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCC---CcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecC
Q 010470 295 DVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD---RTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI 371 (510)
Q Consensus 295 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 371 (510)
|+. ++.+..+. ...+..+.|+| +++++++++.+ |.|.+||.++.+.+...... .++.++|+|+|++|++++.
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEe
Confidence 986 66666664 56778999999 88888888754 67999999988888776544 4789999999999998764
Q ss_pred ------CCcEEEEECCCCceeeeec
Q 010470 372 ------DGNLRLWDIQTGKLLSEVA 390 (510)
Q Consensus 372 ------dg~i~i~d~~~~~~~~~~~ 390 (510)
|..++||+. .|+.+....
T Consensus 164 ~~r~~~dng~~Iw~~-~G~~l~~~~ 187 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSF-QGRLLYKKP 187 (194)
T ss_pred ccceeccccEEEEEe-cCeEeEecc
Confidence 678899997 566665443
No 245
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.60 E-value=2.6e-13 Score=115.11 Aligned_cols=148 Identities=15% Similarity=0.273 Sum_probs=108.8
Q ss_pred eEEEEecCCCEEEEEeC----------CCeEEEEEcCC-CCeeEeecC-CCCceEEEEEecCCCCEEEE--EeCCCcEEE
Q 010470 271 LDLAITHDNRSVIAASS----------SNNLYVWDVNS-GRVRHTLTG-HTDKVCAVDVSKISSRHVVS--AAYDRTLKV 336 (510)
Q Consensus 271 ~~~~~~~~~~~l~~~~~----------d~~i~iwd~~~-~~~~~~~~~-~~~~v~~i~~~~~~~~~l~s--~~~dg~i~i 336 (510)
..+.|+|+|.+|++-.. -+...+|.++. +.....+.- ..++|.+++|+| ++..|++ |..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccEE
Confidence 46889999988776543 13455555532 234444432 345799999999 5555433 446789999
Q ss_pred EECCCCeEeeeeeecCceeEEEEcCCCCEEEEecC---CCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEe
Q 010470 337 WDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI---DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG 413 (510)
Q Consensus 337 wd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 413 (510)
||++ +..+..+. ...++.+.|+|+|+++++++. .|.|.+||.++.+.+..... ..++.+.|+|+|++|+++.
T Consensus 88 yd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~---~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 88 YDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH---SDATDVEWSPDGRYLATAT 162 (194)
T ss_pred EcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc---CcEEEEEEcCCCCEEEEEE
Confidence 9996 66666654 456889999999999998764 46799999998888776654 4578999999999999987
Q ss_pred c------CCcEEEEEcC
Q 010470 414 R------DNLHNLFDIR 424 (510)
Q Consensus 414 ~------d~~i~i~d~~ 424 (510)
. |+.++||+..
T Consensus 163 t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 163 TSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred eccceeccccEEEEEec
Confidence 4 6788889875
No 246
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=2.9e-13 Score=127.36 Aligned_cols=276 Identities=15% Similarity=0.159 Sum_probs=198.7
Q ss_pred ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc---------------ceecccccccceeEEEEecCCCEEEEEeCCC
Q 010470 225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGS---------------LSSTLYGCLGSVLDLAITHDNRSVIAASSSN 289 (510)
Q Consensus 225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 289 (510)
.....|+.|+....++++||.||.++|..+.+.. .-.++.||.+.|.-+.|+.+.+.|-++..+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 4568899999999999999999999999875421 1246789999999999999999999999999
Q ss_pred eEEEEEcCCCCeeEeec--CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEE
Q 010470 290 NLYVWDVNSGRVRHTLT--GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIF 367 (510)
Q Consensus 290 ~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 367 (510)
.|.+|-+-.|.....+. ...+.|.+++|+. ++..+.....||.|.+=.+..++.-..-........+.|++|...++
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQAL 172 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHH
Confidence 99999998876544332 2456788999998 88889999999999887776443322222223356789999999999
Q ss_pred EecCCCcEEEEECCCC-------ceeeeecc---cccccEEEEEEc--------CCCCEEEEEecCCcEEEEEcCCceee
Q 010470 368 SGHIDGNLRLWDIQTG-------KLLSEVAA---HSLAAVTSISLS--------RSGNIILTSGRDNLHNLFDIRSLEVC 429 (510)
Q Consensus 368 ~~~~dg~i~i~d~~~~-------~~~~~~~~---~~~~~i~~i~~~--------~~~~~l~~~~~d~~i~i~d~~~~~~~ 429 (510)
.+-.+|.+.+||.... .+.....+ .....+..+.|. |+...|+++..+|.+.|..-.+....
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P 252 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP 252 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence 9999999999996422 01001110 011235556654 57789999999998888755443322
Q ss_pred eEeecCCCeeecCceeEEEcCCCCEEEEEcCC---------CeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEe
Q 010470 430 GSLRATGNRVASNWSRSCISPDESYVAAGSAD---------GSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASA 500 (510)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 500 (510)
..+... ..+ ....|+++|..|++++.+ +.|.+|. .-|..+.+++.....|++++|-..|-.++.+
T Consensus 253 vv~dtg-m~~----vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 253 VVVDTG-MKI----VGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIA 326 (1189)
T ss_pred eEEecc-cEe----ecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEE
Confidence 222222 222 237899999999998864 2567766 5588888888888899999998777666554
Q ss_pred eCCCeEEE
Q 010470 501 DKNGVVCV 508 (510)
Q Consensus 501 ~~dg~i~i 508 (510)
.|+.|++
T Consensus 327 -vdsfiyf 333 (1189)
T KOG2041|consen 327 -VDSFIYF 333 (1189)
T ss_pred -ecceEEE
Confidence 4556554
No 247
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.57 E-value=3.5e-12 Score=122.02 Aligned_cols=256 Identities=16% Similarity=0.142 Sum_probs=172.9
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCcceecccccccceeE-EEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceE-
Q 010470 236 NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLD-LAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVC- 313 (510)
Q Consensus 236 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~- 313 (510)
++..++.++.+|.+..+|..+|+.+....... .+.+ ... .+..++.++.+|.++.||..+|+.+..+......+.
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~ 180 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTL 180 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceee
Confidence 46688888899999999999998876654322 2221 122 345678888899999999999998877754332211
Q ss_pred ----EEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc-----e---eEEEEcC--CCCEEEEecCCCcEEEEE
Q 010470 314 ----AVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-----C---NALAFSM--DGQTIFSGHIDGNLRLWD 379 (510)
Q Consensus 314 ----~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----i---~~i~~~~--~~~~l~~~~~dg~i~i~d 379 (510)
+..+ .+..++.+..+|.+..+|+.+|+.+........ + ..+.-+| .+..+++++.+|.++.||
T Consensus 181 ~~~~sp~~---~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d 257 (377)
T TIGR03300 181 RGSASPVI---ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD 257 (377)
T ss_pred cCCCCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence 1111 124677888889999999999987765432211 0 0111111 356778888899999999
Q ss_pred CCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEc
Q 010470 380 IQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGS 459 (510)
Q Consensus 380 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 459 (510)
..+|+.+....... ..... ..+..+++++.+|.+..+|..+++.+............ ...+ .+..|++++
T Consensus 258 ~~tG~~~W~~~~~~---~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~s---sp~i--~g~~l~~~~ 327 (377)
T TIGR03300 258 LRSGRVLWKRDASS---YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLT---APAV--VGGYLVVGD 327 (377)
T ss_pred CCCCcEEEeeccCC---ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccc---cCEE--ECCEEEEEe
Confidence 99998877665321 11222 24678888889999999999998876655322111111 1112 467889999
Q ss_pred CCCeEEEEeCCCcceeecccccCcCEE-EEEEeCCCCcEEEeeCCCeEEEc
Q 010470 460 ADGSVYIWSISKADIVRTLKEHTAPVL-SCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 460 ~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
.+|.|+++|..+++.+..++.+...+. +..+. ++ .|+.++.||.|+.|
T Consensus 328 ~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 328 FEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLYAF 376 (377)
T ss_pred CCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEEEe
Confidence 999999999999999988876654433 33333 33 58888999999876
No 248
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.57 E-value=1.5e-13 Score=125.07 Aligned_cols=189 Identities=21% Similarity=0.225 Sum_probs=129.0
Q ss_pred cCCCEEEEeeCCCeEEEEeCCCCcceeccc----ccccceeEEEEecCCC-EEEEEeCCCeEEEEEcCCCCeeEeecCCC
Q 010470 235 YNSARLISGGQDKSIKLWDTNTGSLSSTLY----GCLGSVLDLAITHDNR-SVIAASSSNNLYVWDVNSGRVRHTLTGHT 309 (510)
Q Consensus 235 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 309 (510)
|.|--++.|-.-|.|.+.|....+....+. -....|+++.|-|.+. .++++-.+|.+++||..- .
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~----------~ 252 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI----------V 252 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc----------c
Confidence 456668888888999999876533322221 1247899999988665 455666899999998621 1
Q ss_pred CceEEEEEec-CCCCEEEEEeCCCcEEEEECCCCeEeeee-eecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceee
Q 010470 310 DKVCAVDVSK-ISSRHVVSAAYDRTLKVWDLHKGYCVNTI-IFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLS 387 (510)
Q Consensus 310 ~~v~~i~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 387 (510)
...+...|.. .++..+.....-+. .+..++..+ .....|+.++|+|||++|++.+.||.++|||..+.+.+.
T Consensus 253 ~~~t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg 326 (636)
T KOG2394|consen 253 CGATAPSYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG 326 (636)
T ss_pred ccCCCCcccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHH
Confidence 1111111111 02333322211100 011222222 233579999999999999999999999999999888776
Q ss_pred eecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeee
Q 010470 388 EVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVA 440 (510)
Q Consensus 388 ~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 440 (510)
.++..- +...|++|||||+||++|+.|..|.||.+...+++..-.+|...+.
T Consensus 327 ~mkSYF-GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs 378 (636)
T KOG2394|consen 327 VMKSYF-GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVS 378 (636)
T ss_pred HHHhhc-cceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccccccee
Confidence 666655 8899999999999999999999999999998888776666655443
No 249
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.1e-12 Score=120.44 Aligned_cols=252 Identities=16% Similarity=0.254 Sum_probs=162.8
Q ss_pred ceEEEEEecCCCEEEEe-----eC-----CCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470 227 GCASILFEYNSARLISG-----GQ-----DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV 296 (510)
Q Consensus 227 ~v~~~~~s~~~~~l~s~-----~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 296 (510)
.+.++.|||.|.+|.+- .. .-.+.+|++.++.....+......-++..|++|..+.+ --..+.+++|++
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~ 153 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDL 153 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhh-hhhcceEEEEec
Confidence 68899999999998762 11 23578999998665555543333336888888776332 223456788877
Q ss_pred CCCCeeEeecCCCCceEEEEEecC----------------------------------------------------CCCE
Q 010470 297 NSGRVRHTLTGHTDKVCAVDVSKI----------------------------------------------------SSRH 324 (510)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~i~~~~~----------------------------------------------------~~~~ 324 (510)
.+.+.+. -.-|...|..+.++|. ...+
T Consensus 154 ~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~L 232 (566)
T KOG2315|consen 154 GSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTAL 232 (566)
T ss_pred CCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceE
Confidence 6532111 1113344444444442 2222
Q ss_pred EEEEeC--C---------CcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEE--ecCCCcEEEEECCCCceeeeecc
Q 010470 325 VVSAAY--D---------RTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFS--GHIDGNLRLWDIQTGKLLSEVAA 391 (510)
Q Consensus 325 l~s~~~--d---------g~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~ 391 (510)
|+..+. | .+++++++....+.-.+...++|.+++|+|+|+.+++ |..-..+.|||+ .++++..+..
T Consensus 233 LvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl-r~~~v~df~e 311 (566)
T KOG2315|consen 233 LVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNL-RGKPVFDFPE 311 (566)
T ss_pred EEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcC-CCCEeEeCCC
Confidence 222111 1 1344444443333344444577999999999987765 555678999998 5777766654
Q ss_pred cccccEEEEEEcCCCCEEEEEecC---CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC------CC
Q 010470 392 HSLAAVTSISLSRSGNIILTSGRD---NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA------DG 462 (510)
Q Consensus 392 ~~~~~i~~i~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~------dg 462 (510)
++-+++-|+|.|++++.++.+ |.+.|||..+.+.+..+....... +.|+|||.+|++++. |+
T Consensus 312 ---gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~------~eW~PdGe~flTATTaPRlrvdN 382 (566)
T KOG2315|consen 312 ---GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTV------FEWSPDGEYFLTATTAPRLRVDN 382 (566)
T ss_pred ---CCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceE------EEEcCCCcEEEEEeccccEEecC
Confidence 677889999999999988765 789999999988888777665544 689999999998875 67
Q ss_pred eEEEEeCCCcceeecccccCcCEEEEEEeC
Q 010470 463 SVYIWSISKADIVRTLKEHTAPVLSCSWSG 492 (510)
Q Consensus 463 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 492 (510)
.++||++. |..+....-. +....+.|-|
T Consensus 383 g~Kiwhyt-G~~l~~~~f~-sEL~qv~W~P 410 (566)
T KOG2315|consen 383 GIKIWHYT-GSLLHEKMFK-SELLQVEWRP 410 (566)
T ss_pred CeEEEEec-Cceeehhhhh-HhHhheeeee
Confidence 79999965 5444332211 1356666664
No 250
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.56 E-value=5.7e-13 Score=123.11 Aligned_cols=183 Identities=21% Similarity=0.322 Sum_probs=150.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEeeeeeec----CceeEEEEc--------------------CCCCEEEEecCCCcEE
Q 010470 321 SSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH----SNCNALAFS--------------------MDGQTIFSGHIDGNLR 376 (510)
Q Consensus 321 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~i~~i~~~--------------------~~~~~l~~~~~dg~i~ 376 (510)
...+++....||.+++||...++....+... +.+++..|. .+...++-|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 5678999999999999999998877776543 234444442 1234678899999999
Q ss_pred EEECCCCceeeeec-ccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEE
Q 010470 377 LWDIQTGKLLSEVA-AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 455 (510)
Q Consensus 377 i~d~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 455 (510)
+|+...|+....+. ..+.++|+++.++.+-..|.+++.|+.+..|+......+..+........+ ++++|||..+
T Consensus 84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~s----l~is~D~~~l 159 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSS----LCISPDGKIL 159 (541)
T ss_pred EEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccce----EEEcCCCCEE
Confidence 99999999888887 555689999999999999999999999999999999998888877666655 9999999999
Q ss_pred EEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCC-----CCcEEE-eeCCCeEEEc
Q 010470 456 AAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGL-----GKPLAS-ADKNGVVCVW 509 (510)
Q Consensus 456 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~s-~~~dg~i~iw 509 (510)
++++ +.|.+||+.+++.+..|.+|.++|.+++|..+ |.++.+ ...+..+.+|
T Consensus 160 ~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 160 LTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW 217 (541)
T ss_pred Eecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEE
Confidence 9887 57999999999999999999999999999877 666555 3444455555
No 251
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.56 E-value=6.7e-13 Score=130.31 Aligned_cols=138 Identities=25% Similarity=0.390 Sum_probs=115.0
Q ss_pred hhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCccee-cccccccc
Q 010470 191 KQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSS-TLYGCLGS 269 (510)
Q Consensus 191 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~ 269 (510)
.++.-+.+-+|... +...|. .+.||.|.|..+.|+.||.++++.|.|.++++|++++.+... +..+|+..
T Consensus 150 ~gsv~~~iivW~~~-----~dn~p~----~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaR 220 (967)
T KOG0974|consen 150 SGSVFGEIIVWKPH-----EDNKPI----RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSAR 220 (967)
T ss_pred eccccccEEEEecc-----ccCCcc----eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccce
Confidence 34455556666643 222222 789999999999999999999999999999999999988766 77899999
Q ss_pred eeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCC-CceEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 010470 270 VLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHT-DKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK 341 (510)
Q Consensus 270 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~ 341 (510)
|+.++|.|+ ++++++.|.+.++|+.+ +.....+.+|. ..++.+.+.+ +...+++++.||.+++||+..
T Consensus 221 vw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 221 VWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhhhc
Confidence 999999988 89999999999999755 55556888876 4588999887 788999999999999999853
No 252
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.8e-12 Score=118.65 Aligned_cols=264 Identities=13% Similarity=0.226 Sum_probs=166.9
Q ss_pred eEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeC-----------CCeEEEEEc
Q 010470 228 CASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS-----------SNNLYVWDV 296 (510)
Q Consensus 228 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~iwd~ 296 (510)
=+-+.|||.|.||+|-..-| |.+|--.+...++.+. ...|.-+.|||+.+||++-+. ...+.|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~--Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY--HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc--CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 46789999999999988766 8899766655555553 346788999999999998653 258999999
Q ss_pred CCCCeeEeecCCCC--ce-EEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee-cCceeEEEEcCCCCEEEEecC-
Q 010470 297 NSGRVRHTLTGHTD--KV-CAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF-HSNCNALAFSMDGQTIFSGHI- 371 (510)
Q Consensus 297 ~~~~~~~~~~~~~~--~v-~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~- 371 (510)
.+|.....+....+ .+ .-+.|+. ++.+++.-.. .+|.||+..+-.++..-.. .++|....|+|.++.|+--+.
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred cccchhcceeccCCCccccceEEecc-CCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence 99998888765322 22 3467887 7788877664 5788888765332221111 133555555555554442110
Q ss_pred -C---C----------------------------------------------------cEEEEECCCCce-eeeeccccc
Q 010470 372 -D---G----------------------------------------------------NLRLWDIQTGKL-LSEVAAHSL 394 (510)
Q Consensus 372 -d---g----------------------------------------------------~i~i~d~~~~~~-~~~~~~~~~ 394 (510)
+ . ++.||.++.... +..+.. .
T Consensus 368 ~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel--k 445 (698)
T KOG2314|consen 368 TNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL--K 445 (698)
T ss_pred ccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec--c
Confidence 0 0 122222221111 111111 1
Q ss_pred ccEEEEEEcCCCCEEEEEecC---CcEEEEEcCC-c---eeeeEeecCCCeeecCceeEEEcCCCCEEEEE---cCCCeE
Q 010470 395 AAVTSISLSRSGNIILTSGRD---NLHNLFDIRS-L---EVCGSLRATGNRVASNWSRSCISPDESYVAAG---SADGSV 464 (510)
Q Consensus 395 ~~i~~i~~~~~~~~l~~~~~d---~~i~i~d~~~-~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~---~~dg~i 464 (510)
..|...+|.|.|+.+++-+.+ .++.+|.+.+ . ..+..+.. ...+.+.|+|.|++++.+ |..|.+
T Consensus 446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk------~~~N~vfwsPkG~fvvva~l~s~~g~l 519 (698)
T KOG2314|consen 446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK------KFANTVFWSPKGRFVVVAALVSRRGDL 519 (698)
T ss_pred hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc------cccceEEEcCCCcEEEEEEecccccce
Confidence 467788999999987765543 4788887763 1 11222211 123448899999998875 457889
Q ss_pred EEEeCCCcceeecc-cccCcCEEEEEEeCCCCcEEEeeCCCe
Q 010470 465 YIWSISKADIVRTL-KEHTAPVLSCSWSGLGKPLASADKNGV 505 (510)
Q Consensus 465 ~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~ 505 (510)
.++|+.......+- ..|. ..+.+.|.|.|+|++++++-+.
T Consensus 520 ~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~wr 560 (698)
T KOG2314|consen 520 EFYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSWR 560 (698)
T ss_pred EEEecchhhhhhccCcccc-ccccceECCCCCEEEEeeehhh
Confidence 99998753332222 2243 4578999999999999987543
No 253
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.55 E-value=3.1e-12 Score=124.54 Aligned_cols=205 Identities=20% Similarity=0.217 Sum_probs=138.5
Q ss_pred CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCC---CcEEEEECCCCeEeeeeeecCceeEEEEcCCCCE
Q 010470 289 NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD---RTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQT 365 (510)
Q Consensus 289 ~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~ 365 (510)
..|.++|.... ....+..+...+.+..|+| +++.++.++.+ ..|++||+.++.............+++|+|||+.
T Consensus 170 ~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGA-NPQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCC-CCEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence 36888887543 3455555777888999999 77777766543 4799999998865544444455677899999997
Q ss_pred EEE-ecCCC--cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC-C--cEEEEEcCCceeeeEeecCCCee
Q 010470 366 IFS-GHIDG--NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD-N--LHNLFDIRSLEVCGSLRATGNRV 439 (510)
Q Consensus 366 l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~~~ 439 (510)
|+. .+.++ .|++||+.++... .+..+. .......|+|+|+.|+..+.. + .|+++|+.+++... +......
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~~~~- 323 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGP-GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTFRGGY- 323 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEE-ECCCCC-CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCC-
Confidence 764 44444 5999998876543 333332 345567899999988766543 3 57888887765432 2222222
Q ss_pred ecCceeEEEcCCCCEEEEEcCCC---eEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCC
Q 010470 440 ASNWSRSCISPDESYVAAGSADG---SVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNG 504 (510)
Q Consensus 440 ~~~~~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 504 (510)
.....|+|+|++|+.++.++ .|.+||+.++... .+... ......+|+|+|++|+..+.++
T Consensus 324 ---~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 324 ---NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred ---ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 22378999999999888765 7999998875443 22222 2234568999999888766654
No 254
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.55 E-value=2.1e-12 Score=119.44 Aligned_cols=188 Identities=14% Similarity=0.236 Sum_probs=152.0
Q ss_pred ecCCCEEEEeeCCCeEEEEeCCCCcceecccc---cccceeEEEEe------c--------------CCCEEEEEeCCCe
Q 010470 234 EYNSARLISGGQDKSIKLWDTNTGSLSSTLYG---CLGSVLDLAIT------H--------------DNRSVIAASSSNN 290 (510)
Q Consensus 234 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~------~--------------~~~~l~~~~~d~~ 290 (510)
.|.+.++|....||.++||+...++....+.. -.+..++..|. | +...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 35567999999999999999998877555442 23344445542 2 4456777888999
Q ss_pred EEEEEcCCCCeeEeec--CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcCCCCEEE
Q 010470 291 LYVWDVNSGRVRHTLT--GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIF 367 (510)
Q Consensus 291 i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~ 367 (510)
|.+|++..|+....+. +|.+.|.++.++. .-..|.+++.|+.+..|+...+..+..+.... .+.+++++|||..++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 9999999999888775 6999999999887 78899999999999999999998888887664 489999999999999
Q ss_pred EecCCCcEEEEECCCCceeeeecccccccEEEEEEcCC-----CCEEEEEe-cCCcEEEEEcCC
Q 010470 368 SGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRS-----GNIILTSG-RDNLHNLFDIRS 425 (510)
Q Consensus 368 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~-----~~~l~~~~-~d~~i~i~d~~~ 425 (510)
+++ +.|.+||+.+++.+..|.+|. ++|+++.|.-+ |.+++++. .+..+.+|-...
T Consensus 161 ~as--~~ik~~~~~~kevv~~ftgh~-s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 161 TAS--RQIKVLDIETKEVVITFTGHG-SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ecc--ceEEEEEccCceEEEEecCCC-cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 887 589999999999999999998 99999999876 67766654 344566665543
No 255
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.54 E-value=8e-12 Score=119.55 Aligned_cols=258 Identities=16% Similarity=0.123 Sum_probs=172.4
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEE
Q 010470 236 NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAV 315 (510)
Q Consensus 236 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i 315 (510)
.+..+++++.+|.|..+|..+|+.+............+.. ++..+++++.+|.++.+|..+|+.+....... .+.+.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~ 140 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSP 140 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecC
Confidence 3668889999999999999999987665433322222222 56788889999999999999999887765332 22221
Q ss_pred EEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCcee------EEEEcCCCCEEEEecCCCcEEEEECCCCceeeee
Q 010470 316 DVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCN------ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEV 389 (510)
Q Consensus 316 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~------~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 389 (510)
-.. .+..++.++.+|.+..||..+|+.+..+....... +..+ .+..++++..+|.+..+|..+|+.+...
T Consensus 141 p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 141 PLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred CEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeee
Confidence 111 24567777789999999999999887775543321 1111 2346778888999999999999877654
Q ss_pred cccccc---c---EEEEEEcC--CCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC
Q 010470 390 AAHSLA---A---VTSISLSR--SGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD 461 (510)
Q Consensus 390 ~~~~~~---~---i~~i~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 461 (510)
...... . ...+.-+| .+..+++++.+|.+..||..+++......... . .....++..+++++.+
T Consensus 217 ~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~------~--~~p~~~~~~vyv~~~~ 288 (377)
T TIGR03300 217 RVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS------Y--QGPAVDDNRLYVTDAD 288 (377)
T ss_pred ccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC------c--cCceEeCCEEEEECCC
Confidence 321100 0 00111111 35678888899999999999988776554211 1 1122356788888899
Q ss_pred CeEEEEeCCCcceeeccccc-CcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 462 GSVYIWSISKADIVRTLKEH-TAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 462 g~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
|.|+.+|..+++.+...... .....+... .+..|++++.+|.|++||
T Consensus 289 G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 289 GVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred CeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence 99999999999887665321 112222222 356888889999998875
No 256
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.54 E-value=7.9e-13 Score=129.81 Aligned_cols=271 Identities=16% Similarity=0.250 Sum_probs=185.3
Q ss_pred cccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc-cccee---EEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 010470 224 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC-LGSVL---DLAITHDNRSVIAASSSNNLYVWDVNSG 299 (510)
Q Consensus 224 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~---~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 299 (510)
|-+++++..+-. ++|..|. --.|.+||+.++..+..+... ...+. .. ..-.+.+++++..-+.+..=+.. .
T Consensus 6 ~~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~-~~l~~~~~v~~~~~~~v~~~~~~-~ 80 (967)
T KOG0974|consen 6 SLGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGK-VKLLSGKIVTCAKSDEVYVKEAS-N 80 (967)
T ss_pred ccccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhccccccccccc-ceeccceEEEEEeecceeecchh-h
Confidence 345556665544 5666655 347999999988765544321 11111 00 00123345555544333332211 1
Q ss_pred CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc-----eeEEEEcCCCCEEEEecCCCc
Q 010470 300 RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-----CNALAFSMDGQTIFSGHIDGN 374 (510)
Q Consensus 300 ~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----i~~i~~~~~~~~l~~~~~dg~ 374 (510)
.....+ .+.+....+.. ....++.++.++.+.+||...+.....+..... ..-+.++++.-++++|+.-|.
T Consensus 81 ~~~~~~---s~wi~g~~l~~-e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~ 156 (967)
T KOG0974|consen 81 QIIERF---SDWIFGAKLFE-ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGE 156 (967)
T ss_pred hhhhhc---cccccccchhh-hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecccccc
Confidence 111222 23333334443 567788888899999999988877777666544 223344667778999999999
Q ss_pred EEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCE
Q 010470 375 LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESY 454 (510)
Q Consensus 375 i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 454 (510)
|.+|+....+....+.+|. +.|.++.++.||.++++.+.|..+++|++.+.+... .....+...+..++|.|+ .
T Consensus 157 iivW~~~~dn~p~~l~GHe-G~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~---~~~fgHsaRvw~~~~~~n--~ 230 (967)
T KOG0974|consen 157 IIVWKPHEDNKPIRLKGHE-GSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG---CTGFGHSARVWACCFLPN--R 230 (967)
T ss_pred EEEEeccccCCcceecccC-CceEEEEEccCCcEEEEEecCcceeeeecccccccC---cccccccceeEEEEeccc--e
Confidence 9999987444444566666 999999999999999999999999999999877655 222233334445889888 9
Q ss_pred EEEEcCCCeEEEEeCCCcceeecccccC-cCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 455 VAAGSADGSVYIWSISKADIVRTLKEHT-APVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 455 l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+++++.|-+.++|+.+ +..+..+..|. ..|..++..++...++|++.||.+++|+
T Consensus 231 i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 231 IITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred eEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 9999999999999754 55566777775 4689999999999999999999999996
No 257
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.53 E-value=7.8e-11 Score=107.55 Aligned_cols=236 Identities=13% Similarity=0.112 Sum_probs=157.4
Q ss_pred EecCCCEEEEeeC----------CCeEEEEeCCCCcceeccccc-------ccceeEEEEecCCCEEEEEe-C-CCeEEE
Q 010470 233 FEYNSARLISGGQ----------DKSIKLWDTNTGSLSSTLYGC-------LGSVLDLAITHDNRSVIAAS-S-SNNLYV 293 (510)
Q Consensus 233 ~s~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~-~-d~~i~i 293 (510)
+||||+.|+++.. +..|.+||..+++.+..+... ......++++|||+++++.. . ++.|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999998877765 789999999999998777632 22334789999999999877 4 789999
Q ss_pred EEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC-CeE-eeeeee-cC---ce-eEEEEcC-CCCE
Q 010470 294 WDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK-GYC-VNTIIF-HS---NC-NALAFSM-DGQT 365 (510)
Q Consensus 294 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~-~~~~~~-~~---~i-~~i~~~~-~~~~ 365 (510)
+|+.+++.+..+.-.. ...-... + +..+. +.+.||......+.+ |+. ...... +. .+ ..-.|.+ +|.+
T Consensus 133 vD~~~~kvv~ei~vp~-~~~vy~t-~-e~~~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~ 208 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPD-CYHIFPT-A-NDTFF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRL 208 (352)
T ss_pred EECCCCcEEEEEeCCC-CcEEEEe-c-CCccE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcE
Confidence 9999999988887432 1111212 1 22222 333355555543322 221 111111 11 00 0013445 8888
Q ss_pred EEEecCCCcEEEEECCCC-----ceeeeeccc------ccccEEEEEEcCCCCEEEEEe----------cCCcEEEEEcC
Q 010470 366 IFSGHIDGNLRLWDIQTG-----KLLSEVAAH------SLAAVTSISLSRSGNIILTSG----------RDNLHNLFDIR 424 (510)
Q Consensus 366 l~~~~~dg~i~i~d~~~~-----~~~~~~~~~------~~~~i~~i~~~~~~~~l~~~~----------~d~~i~i~d~~ 424 (510)
+++... |.|++.|+... .....+... ..+.+.-++++|+++.+++.. ..+.|.++|..
T Consensus 209 ~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~ 287 (352)
T TIGR02658 209 VWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAK 287 (352)
T ss_pred EEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECC
Confidence 887776 99999996432 222222211 123445599999999888743 22579999999
Q ss_pred CceeeeEeecCCCeeecCceeEEEcCCCC-EEEEEc-CCCeEEEEeCCCcceeecc
Q 010470 425 SLEVCGSLRATGNRVASNWSRSCISPDES-YVAAGS-ADGSVYIWSISKADIVRTL 478 (510)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~ 478 (510)
+++.+..+....... .++++|||+ +|++.+ .++.|.++|..+++.+.++
T Consensus 288 t~kvi~~i~vG~~~~-----~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 288 TGKRLRKIELGHEID-----SINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCeEEEEEeCCCcee-----eEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 999998887654333 389999999 777666 5788999999999998887
No 258
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=8e-12 Score=121.68 Aligned_cols=202 Identities=16% Similarity=0.165 Sum_probs=135.5
Q ss_pred eeeccccccceEEEEEecCCCEEEEeeCC---CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEE-eCCC--eE
Q 010470 218 KHKINAHEGGCASILFEYNSARLISGGQD---KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAA-SSSN--NL 291 (510)
Q Consensus 218 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~--~i 291 (510)
...+..+...+....|+|||+.|+..+.+ ..|.+||+.++.... +....+.+....|+|||+.|+.. +.+| .|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I 269 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI 269 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence 34455677789999999999998876643 369999998876533 33333455678999999988754 4444 68
Q ss_pred EEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEe-CCC--cEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEE
Q 010470 292 YVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAA-YDR--TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFS 368 (510)
Q Consensus 292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 368 (510)
++||+.++... .+..+........|+| ++..++..+ .+| .|+++|+.++................|+|+|+.++.
T Consensus 270 y~~d~~~~~~~-~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~ 347 (430)
T PRK00178 270 YVMDLASRQLS-RVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVM 347 (430)
T ss_pred EEEECCCCCeE-EcccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEE
Confidence 88899887654 3555555667788999 666555444 333 578888877765433322233446789999999887
Q ss_pred ecCC-C--cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC---CcEEEEEcCC
Q 010470 369 GHID-G--NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD---NLHNLFDIRS 425 (510)
Q Consensus 369 ~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i~i~d~~~ 425 (510)
.+.+ + .|.+||+.++... .+... .......|+|+|+.++..+.+ ..+.++++..
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~~-~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSVR-ILTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred EEccCCceEEEEEECCCCCEE-EccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 6543 3 5888999877643 33222 122356899999988876654 2466666643
No 259
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.52 E-value=1e-11 Score=112.81 Aligned_cols=272 Identities=15% Similarity=0.220 Sum_probs=185.5
Q ss_pred cceEEEEEecCCCEEEEeeCCC---------------eEEEEeCCCCcceecccccccc--ee-EEEEecCCCEEEEEeC
Q 010470 226 GGCASILFEYNSARLISGGQDK---------------SIKLWDTNTGSLSSTLYGCLGS--VL-DLAITHDNRSVIAASS 287 (510)
Q Consensus 226 ~~v~~~~~s~~~~~l~s~~~dg---------------~i~iwd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~~~~~ 287 (510)
..|..+.|||.+++|.+-+..+ .+.+||..+|..+..+..-..+ .+ -+.|+-+.++++-. .
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v 150 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V 150 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence 4588999999999999865433 4999999999999888776655 45 67888888877655 3
Q ss_pred CCeEEEEEcCCCCe-eEeecC-CCCceEEEEEecC-CCCEEEE-----EeCCCcEEEEECCCCeEeeeeeec-CceeEEE
Q 010470 288 SNNLYVWDVNSGRV-RHTLTG-HTDKVCAVDVSKI-SSRHVVS-----AAYDRTLKVWDLHKGYCVNTIIFH-SNCNALA 358 (510)
Q Consensus 288 d~~i~iwd~~~~~~-~~~~~~-~~~~v~~i~~~~~-~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~ 358 (510)
...++|+++ ++.. ...+.. ....|....|+|. ++..|+. .+..+++++|.+..+..+.+...- -.-..+.
T Consensus 151 ~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLk 229 (561)
T COG5354 151 GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLK 229 (561)
T ss_pred cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEE
Confidence 347999997 3332 111111 1356788888885 2333342 456789999999877665554332 2234688
Q ss_pred EcCCCCEEEEec-----------CCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEe--cCCcEEEEEcCC
Q 010470 359 FSMDGQTIFSGH-----------IDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG--RDNLHNLFDIRS 425 (510)
Q Consensus 359 ~~~~~~~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--~d~~i~i~d~~~ 425 (510)
|.+.|.++++-. ...+++++++......... .- .++|...+|.|.++.+++.+ ....+.++|++.
T Consensus 230 W~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~-~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 230 WQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DL-KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred EecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cc-cccceeeeecccCCceeEEecccccceeeccccc
Confidence 888888776421 1246888988643333232 22 38999999999988776654 677899999987
Q ss_pred ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC---CeEEEEeCCCcceee-cccccCcCEEEEEEeCCCCcEEEee
Q 010470 426 LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD---GSVYIWSISKADIVR-TLKEHTAPVLSCSWSGLGKPLASAD 501 (510)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~ 501 (510)
. ....+..... . .+.|+|.+++++.++.| |.|-+||......+. .+.+.. ..-+.|+|||.++.+..
T Consensus 308 N-l~~~~Pe~~r--N----T~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ 378 (561)
T COG5354 308 N-LRFYFPEQKR--N----TIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDT 378 (561)
T ss_pred c-eEEecCCccc--c----cccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecC
Confidence 6 3333322221 1 26799999999887665 789999987654443 554433 45678999999877654
Q ss_pred ------CCCeEEEcC
Q 010470 502 ------KNGVVCVWT 510 (510)
Q Consensus 502 ------~dg~i~iwd 510 (510)
.|..|.||+
T Consensus 379 ts~k~~~Dn~i~l~~ 393 (561)
T COG5354 379 TSEKLRVDNSIKLWD 393 (561)
T ss_pred CCcccccCcceEEEE
Confidence 367788885
No 260
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1.9e-11 Score=117.48 Aligned_cols=238 Identities=10% Similarity=0.061 Sum_probs=147.4
Q ss_pred CeEEEEeCCCCcceecccccccceeEEEEecCCCE--E-EEEeCC--CeEEEEEcCCCCeeEeecCCCCceEEEEEecCC
Q 010470 247 KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRS--V-IAASSS--NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKIS 321 (510)
Q Consensus 247 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l-~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 321 (510)
+.|.+.|.+.+.. ..+......+.+-.|+|||+. + ++...+ ..|++.++.+++.... ....+......|+| +
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSP-D 241 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSP-R 241 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECC-C
Confidence 4677778775544 334445566778899999975 2 234333 3688889887764333 32444556689999 6
Q ss_pred CCEEEEEe-CCC----cEEEEECCCC---eEeeeeeec-CceeEEEEcCCCCEEEEec-CCCc--EEEEECCC-Cceeee
Q 010470 322 SRHVVSAA-YDR----TLKVWDLHKG---YCVNTIIFH-SNCNALAFSMDGQTIFSGH-IDGN--LRLWDIQT-GKLLSE 388 (510)
Q Consensus 322 ~~~l~s~~-~dg----~i~iwd~~~~---~~~~~~~~~-~~i~~i~~~~~~~~l~~~~-~dg~--i~i~d~~~-~~~~~~ 388 (510)
++.|+..+ .+| .+..|++..+ ......... ......+|+|||+.|+..+ .+|. |+++++.. +.....
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 66665544 223 3444776643 333333222 2346789999999877654 4565 44445532 233333
Q ss_pred ecccccccEEEEEEcCCCCEEEEEecC---CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC---CC
Q 010470 389 VAAHSLAAVTSISLSRSGNIILTSGRD---NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA---DG 462 (510)
Q Consensus 389 ~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---dg 462 (510)
+.... ..+....|+|||+.|+..+.+ ..|.+||+.+++....... ... .....|+|||++|+..+. .+
T Consensus 322 lt~~~-~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-~~~----~~~p~wSpDG~~L~f~~~~~g~~ 395 (428)
T PRK01029 322 LTKKY-RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-PEN----KESPSWAIDSLHLVYSAGNSNES 395 (428)
T ss_pred eccCC-CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC-CCC----ccceEECCCCCEEEEEECCCCCc
Confidence 43333 466788999999988876543 3689999988776433322 111 223789999998875433 35
Q ss_pred eEEEEeCCCcceeecccccCcCEEEEEEeCCC
Q 010470 463 SVYIWSISKADIVRTLKEHTAPVLSCSWSGLG 494 (510)
Q Consensus 463 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 494 (510)
.|++||+.+++...... ..+.+...+|+|-.
T Consensus 396 ~L~~vdl~~g~~~~Lt~-~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 396 ELYLISLITKKTRKIVI-GSGEKRFPSWGAFP 426 (428)
T ss_pred eEEEEECCCCCEEEeec-CCCcccCceecCCC
Confidence 68999988776544333 44556778998754
No 261
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.52 E-value=3.6e-11 Score=127.14 Aligned_cols=242 Identities=13% Similarity=0.150 Sum_probs=166.7
Q ss_pred EEEEEecC-CCEEEEeeCCCeEEEEeCCCCcceecccc--------------cccceeEEEEecCCCEEEEEe-CCCeEE
Q 010470 229 ASILFEYN-SARLISGGQDKSIKLWDTNTGSLSSTLYG--------------CLGSVLDLAITHDNRSVIAAS-SSNNLY 292 (510)
Q Consensus 229 ~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~-~d~~i~ 292 (510)
..++++++ |.++++-+.++.|.+||... ..+..+.+ .-.....++++++++.|+++. .++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 56788874 66777778889999999864 33322221 112457899999988776665 457899
Q ss_pred EEEcCCCCeeEeecCC-----------------CCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee-----
Q 010470 293 VWDVNSGRVRHTLTGH-----------------TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF----- 350 (510)
Q Consensus 293 iwd~~~~~~~~~~~~~-----------------~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----- 350 (510)
++|+.++. +.++.+- -....+++++|.++.++++.+.++.|++||..++.... +..
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYER 727 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccc
Confidence 99987654 3333110 12346789998666777787888999999998775432 211
Q ss_pred -----------cCceeEEEEcCCCCE-EEEecCCCcEEEEECCCCceeeeec-------------cc-------ccccEE
Q 010470 351 -----------HSNCNALAFSMDGQT-IFSGHIDGNLRLWDIQTGKLLSEVA-------------AH-------SLAAVT 398 (510)
Q Consensus 351 -----------~~~i~~i~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~-------------~~-------~~~~i~ 398 (510)
...+..++++|+|.. +++.+.++.|++||+.++....... .. ......
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 123678999999984 4566677899999998765321110 00 012356
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCC----------eeecCceeEEEcCCCCEEEEEcCCCeEEEEe
Q 010470 399 SISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGN----------RVASNWSRSCISPDESYVAAGSADGSVYIWS 468 (510)
Q Consensus 399 ~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----------~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd 468 (510)
+++++++|+++++.+.++.|++||..++....... .+. ........++++++|+++++.+.++.|++||
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG-~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG-TGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec-cCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 89999999999999999999999998776553322 111 0111345589999999999999999999999
Q ss_pred CCCcce
Q 010470 469 ISKADI 474 (510)
Q Consensus 469 ~~~~~~ 474 (510)
+.+++.
T Consensus 887 ~~~~~~ 892 (1057)
T PLN02919 887 LNKGEA 892 (1057)
T ss_pred CCCCcc
Confidence 988764
No 262
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.52 E-value=2.2e-12 Score=111.27 Aligned_cols=243 Identities=16% Similarity=0.297 Sum_probs=167.5
Q ss_pred cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC-----eeEeecCCC------------CceEEEEEecC-CCCEEEE
Q 010470 266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR-----VRHTLTGHT------------DKVCAVDVSKI-SSRHVVS 327 (510)
Q Consensus 266 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~------------~~v~~i~~~~~-~~~~l~s 327 (510)
....|.++.|...|.+|++|+.+|.|.+|.-.... ....+..|. .+|..+.|.+. +...++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 35678899999999999999999999999643322 233343443 36788888874 3356777
Q ss_pred EeCCCcEEEEECCCCe-----------------------------------Eeeeeee--cCceeEEEEcCCCCEEEEec
Q 010470 328 AAYDRTLKVWDLHKGY-----------------------------------CVNTIIF--HSNCNALAFSMDGQTIFSGH 370 (510)
Q Consensus 328 ~~~dg~i~iwd~~~~~-----------------------------------~~~~~~~--~~~i~~i~~~~~~~~l~~~~ 370 (510)
.+.|.+|++|.+.... +.+.+.. ...++++.++.|+..++++.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 7889999999875321 1111111 12378999999999888775
Q ss_pred CCCcEEEEECCCCceee---eecccc----cccEEEEEEcCC-CCEEEEEecCCcEEEEEcCCceee----eEeecCCC-
Q 010470 371 IDGNLRLWDIQTGKLLS---EVAAHS----LAAVTSISLSRS-GNIILTSGRDNLHNLFDIRSLEVC----GSLRATGN- 437 (510)
Q Consensus 371 ~dg~i~i~d~~~~~~~~---~~~~~~----~~~i~~i~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~- 437 (510)
|=.|.+|++.-..... .++.+. ...|++..|+|. .+.++-++..|.|++.|++..... ..+..+..
T Consensus 184 -dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred -ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 5689999986433222 222221 135888999995 567888889999999999853322 11111111
Q ss_pred -------eeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC-CcceeecccccC------------cCE---EEEEEeCCC
Q 010470 438 -------RVASNWSRSCISPDESYVAAGSADGSVYIWSIS-KADIVRTLKEHT------------APV---LSCSWSGLG 494 (510)
Q Consensus 438 -------~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~------------~~v---~~~~~~~~~ 494 (510)
.+...++.+.|+++|+|+++-+. -+|++||+. ..+++.+++-|. ..| ..++|+.++
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 12345677899999999998765 469999994 456666665443 223 568999999
Q ss_pred CcEEEeeCCCeEEEcC
Q 010470 495 KPLASADKNGVVCVWT 510 (510)
Q Consensus 495 ~~l~s~~~dg~i~iwd 510 (510)
.+++||+....+++|+
T Consensus 342 ~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFN 357 (433)
T ss_pred ceEecccccceEEEec
Confidence 9999999999999875
No 263
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=1.6e-13 Score=125.43 Aligned_cols=281 Identities=13% Similarity=0.202 Sum_probs=194.9
Q ss_pred eeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC-------CcceecccccccceeEEEEecCCCEEEEEeCCCe
Q 010470 218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT-------GSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNN 290 (510)
Q Consensus 218 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 290 (510)
...+.||+..|..++--.+.+-+++++.|.+|++|.+.. ..+..++..|..+|.++.|-.+.++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 346889999999998777888999999999999999853 23566788999999999999988877654 788
Q ss_pred EEEEEcCCCCeeEeecC--CCCceEEEEEecC-CCCEEEEE-eCCCcEEEEECCCCeEeeeeeec------CceeEEEEc
Q 010470 291 LYVWDVNSGRVRHTLTG--HTDKVCAVDVSKI-SSRHVVSA-AYDRTLKVWDLHKGYCVNTIIFH------SNCNALAFS 360 (510)
Q Consensus 291 i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~-~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~------~~i~~i~~~ 360 (510)
|.+||.--++++..+.. ..+.+..+...+. +..+++.| +...+|+++|.+.+.....+... .-+.++++.
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 99999887776553321 1233333444443 34444444 67899999999988766665432 237899999
Q ss_pred CCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEE-EEcCCceeeeEeecCCCee
Q 010470 361 MDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNL-FDIRSLEVCGSLRATGNRV 439 (510)
Q Consensus 361 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i-~d~~~~~~~~~~~~~~~~~ 439 (510)
+.|++++++-.+|+|.+.|.++|+.+..+.... .....++ .|..+.++.+..|..+.+ |..-.+........+..+.
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpme-cdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepa 963 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWRPME-CDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPA 963 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCCccc-chhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcch
Confidence 999999999999999999999999888776543 2222222 355667777778888888 8766655444443333222
Q ss_pred ecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC----cceeeccc--ccCcCEEEEEEeCCCCcEEEeeCCCeEEE
Q 010470 440 ASNWSRSCISPDESYVAAGSADGSVYIWSISK----ADIVRTLK--EHTAPVLSCSWSGLGKPLASADKNGVVCV 508 (510)
Q Consensus 440 ~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~i 508 (510)
.. +..-|.-+++......+.||--.. ...+..++ ...+..++++--|-+..+..|+..|.|.+
T Consensus 964 hf------lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 964 HF------LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred hh------hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 11 122355667766666677774211 11111222 13466788888888888888888888875
No 264
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=7.2e-12 Score=121.46 Aligned_cols=207 Identities=14% Similarity=0.117 Sum_probs=132.3
Q ss_pred eccccccceEEEEEecCCCEEEEeeCC---CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEE-eCCC--eEEE
Q 010470 220 KINAHEGGCASILFEYNSARLISGGQD---KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAA-SSSN--NLYV 293 (510)
Q Consensus 220 ~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~--~i~i 293 (510)
.+..+...+.+..|||||+.|+..+.+ ..|.+||+.+++... +....+......|+|||+.|+.. +.+| .|++
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 444556678899999999998876543 258899998876422 22223334578999999988754 4555 4888
Q ss_pred EEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEe-CCC--cEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEec
Q 010470 294 WDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAA-YDR--TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGH 370 (510)
Q Consensus 294 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 370 (510)
||+.+++.. .+..+........|+| ++..++..+ .++ .|.++|+.++...............+|+|||++|+..+
T Consensus 291 ~dl~tg~~~-~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 291 VDIATKALT-RITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred EECCCCCeE-ECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEE
Confidence 888877654 4444555667789999 666555444 333 57777887776543322222234578999999988654
Q ss_pred C-CC--cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC-C--cEEEEEcCCceeeeEee
Q 010470 371 I-DG--NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD-N--LHNLFDIRSLEVCGSLR 433 (510)
Q Consensus 371 ~-dg--~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-~--~i~i~d~~~~~~~~~~~ 433 (510)
. ++ .|.++|+.++... .+... .......|+|+|+.|+..+.+ + .+.+++.. +.....+.
T Consensus 369 ~~~g~~~I~~~dl~~g~~~-~lt~~--~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~ 433 (448)
T PRK04792 369 RTNGKFNIARQDLETGAMQ-VLTST--RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLP 433 (448)
T ss_pred ecCCceEEEEEECCCCCeE-EccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECc
Confidence 4 33 4667888777643 23222 122345799999988776544 3 36667764 44444443
No 265
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=3.3e-10 Score=99.35 Aligned_cols=263 Identities=18% Similarity=0.271 Sum_probs=173.3
Q ss_pred CCeEEEEeCCCC--cc-eecccccccceeEEEEecCCCEEEEEeC---CCeEEEEEcCC--CCee--EeecCCCCceEEE
Q 010470 246 DKSIKLWDTNTG--SL-SSTLYGCLGSVLDLAITHDNRSVIAASS---SNNLYVWDVNS--GRVR--HTLTGHTDKVCAV 315 (510)
Q Consensus 246 dg~i~iwd~~~~--~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~--~~~~--~~~~~~~~~v~~i 315 (510)
+.-|.+|++++. +. ...+....+.++-++|+|+++.|+++.. +|.|..|.++. |+.. ........+.+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 456999998742 22 2223356778899999999999998864 46777777664 5432 2222233444789
Q ss_pred EEecCCCCEEEEEeC-CCcEEEEECCC-CeE---eeeeeecCc----------eeEEEEcCCCCEEEEec-CCCcEEEEE
Q 010470 316 DVSKISSRHVVSAAY-DRTLKVWDLHK-GYC---VNTIIFHSN----------CNALAFSMDGQTIFSGH-IDGNLRLWD 379 (510)
Q Consensus 316 ~~~~~~~~~l~s~~~-dg~i~iwd~~~-~~~---~~~~~~~~~----------i~~i~~~~~~~~l~~~~-~dg~i~i~d 379 (510)
++++ ++.+++++.. .|.|.++-+.. |.. +..+.+... +.+..+.|+++++++.+ .--.|.+|+
T Consensus 95 svd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 95 SVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EECC-CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 9988 7777777665 58999998865 332 222322222 78899999999998764 233799999
Q ss_pred CCCCceeee--ecccccccEEEEEEcCCCCEEEEEe-cCCcEEEEEcCCc----eeeeEeecCCC--eeecCceeEEEcC
Q 010470 380 IQTGKLLSE--VAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDIRSL----EVCGSLRATGN--RVASNWSRSCISP 450 (510)
Q Consensus 380 ~~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~----~~~~~~~~~~~--~~~~~~~~~~~s~ 450 (510)
+..|+.... .........+-|.|+|++++.++.+ -+++|.+|..... +.++.+..... .-......+.+++
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~ 253 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP 253 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence 987754321 1223337889999999999887655 5789999988763 22222221111 1112334578999
Q ss_pred CCCEEEEEcC-CCeEEEEeCCCc-ce---eecccccCcCEEEEEEeCCCCcEEEeeCCC-eEEEc
Q 010470 451 DESYVAAGSA-DGSVYIWSISKA-DI---VRTLKEHTAPVLSCSWSGLGKPLASADKNG-VVCVW 509 (510)
Q Consensus 451 ~~~~l~~~~~-dg~i~iwd~~~~-~~---~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-~i~iw 509 (510)
||++|+++.. ...|.+|.+... .. +.....+......+.|+|+|++|++++.++ .|.+|
T Consensus 254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 9999998764 347888887653 22 222333555578999999999998887653 45554
No 266
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.48 E-value=5.9e-11 Score=125.54 Aligned_cols=236 Identities=12% Similarity=0.080 Sum_probs=158.1
Q ss_pred eEEEEecC-CCEEEEEeCCCeEEEEEcCCCCeeEeecC--------------CCCceEEEEEecCCCCEEEE-EeCCCcE
Q 010470 271 LDLAITHD-NRSVIAASSSNNLYVWDVNSGRVRHTLTG--------------HTDKVCAVDVSKISSRHVVS-AAYDRTL 334 (510)
Q Consensus 271 ~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--------------~~~~v~~i~~~~~~~~~l~s-~~~dg~i 334 (510)
..++++++ +..+++-+.++.|++||.. +..+..+.+ .-....++++.+ +++.|++ -..++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 46888875 5566666778899999975 554444332 112357888988 5555444 4456789
Q ss_pred EEEECCCCeEeeeeee------------------cCceeEEEEcC-CCCEEEEecCCCcEEEEECCCCceeeeeccc---
Q 010470 335 KVWDLHKGYCVNTIIF------------------HSNCNALAFSM-DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH--- 392 (510)
Q Consensus 335 ~iwd~~~~~~~~~~~~------------------~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--- 392 (510)
+++|+.++.. .++.. -..+..++++| ++..+++.+.++.|++||..++.... +...
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~ 726 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYE 726 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCcc
Confidence 9999877653 33311 12356899999 56667777888999999987765432 1110
Q ss_pred -----------ccccEEEEEEcCCCCE-EEEEecCCcEEEEEcCCceeeeEeecC-------------CC----eeecCc
Q 010470 393 -----------SLAAVTSISLSRSGNI-ILTSGRDNLHNLFDIRSLEVCGSLRAT-------------GN----RVASNW 443 (510)
Q Consensus 393 -----------~~~~i~~i~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~-------------~~----~~~~~~ 443 (510)
....+..|+++|+|.. +++.+.++.|++||+.++.......+. .. ......
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 1134677999999984 455566789999999876532111000 00 001123
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeeccc-------------ccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 444 SRSCISPDESYVAAGSADGSVYIWSISKADIVRTLK-------------EHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 444 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
..++++++|+++++.+.+++|++||..++....... +.-....+++++++|+.+++.+.++.|++||
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 458899999999999999999999988776542221 1223578999999999888888999999996
No 267
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.47 E-value=2e-11 Score=110.95 Aligned_cols=273 Identities=13% Similarity=0.118 Sum_probs=184.7
Q ss_pred ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCC--------------
Q 010470 223 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS-------------- 288 (510)
Q Consensus 223 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------- 288 (510)
.-.-++..++|||.|.+|++....| |.+|+-..+..+..+. ...|..+.|+|+++||.+-+..
T Consensus 30 ~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~ 106 (561)
T COG5354 30 SENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS 106 (561)
T ss_pred ccCcchhheeecCcchheehhhccc-eEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCccc
Confidence 3556899999999999999887654 9999887776544443 4578999999999999987643
Q ss_pred -CeEEEEEcCCCCeeEeecCCCCc--eE-EEEEecCCCCEEEEEeCCCcEEEEECCCCeEee-eee--ecCceeEEEEcC
Q 010470 289 -NNLYVWDVNSGRVRHTLTGHTDK--VC-AVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN-TII--FHSNCNALAFSM 361 (510)
Q Consensus 289 -~~i~iwd~~~~~~~~~~~~~~~~--v~-~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~--~~~~i~~i~~~~ 361 (510)
+.+.+||..+|..+..+.+...+ .+ -+.|+- ++.+++-. ....++|+++ ++.... .+. ....+....|+|
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP 183 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISP 183 (561)
T ss_pred cCceeEEeccCceeEeeccccCCcccccceeeeee-cchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecC
Confidence 35999999999999998876666 44 567776 55555443 3457999997 332211 111 124588899998
Q ss_pred CC--CEEEE-----ecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEe-----------cCCcEEEEEc
Q 010470 362 DG--QTIFS-----GHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG-----------RDNLHNLFDI 423 (510)
Q Consensus 362 ~~--~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-----------~d~~i~i~d~ 423 (510)
.| ..|+. ++..+.+++|.+..+..+....... ..-..+.|.+.|.++++-- ....++++++
T Consensus 184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk-~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~ 262 (561)
T COG5354 184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK-VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRI 262 (561)
T ss_pred CCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe-ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEee
Confidence 54 34443 5667889999998777665544433 3344588999999876431 1246777877
Q ss_pred CCceeeeEeecCCCeeecCceeEEEcCCCCEEEEE--cCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEee
Q 010470 424 RSLEVCGSLRATGNRVASNWSRSCISPDESYVAAG--SADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASAD 501 (510)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 501 (510)
....+.-.. ....+ +...+|.|.++.+++. -.+-.+.++|+... +...+ ....=+.+.|+|.+++++.+|
T Consensus 263 ~e~~i~V~~-~~~~p----Vhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~ag 334 (561)
T COG5354 263 TERSIPVEK-DLKDP----VHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAG 334 (561)
T ss_pred cccccceec-ccccc----ceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEec
Confidence 633322211 22233 3348999988876654 46788999998765 33333 234446778888888888866
Q ss_pred CC---CeEEEcC
Q 010470 502 KN---GVVCVWT 510 (510)
Q Consensus 502 ~d---g~i~iwd 510 (510)
-| |.+-+||
T Consensus 335 F~nl~gni~i~~ 346 (561)
T COG5354 335 FDNLQGNIEIFD 346 (561)
T ss_pred CCccccceEEec
Confidence 55 5566664
No 268
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=7.2e-10 Score=97.26 Aligned_cols=265 Identities=13% Similarity=0.206 Sum_probs=174.4
Q ss_pred cccccceEEEEEecCCCEEEEeeCC---CeEEEEeCCC--Ccc--eecccccccceeEEEEecCCCEEEEEeC-CCeEEE
Q 010470 222 NAHEGGCASILFEYNSARLISGGQD---KSIKLWDTNT--GSL--SSTLYGCLGSVLDLAITHDNRSVIAASS-SNNLYV 293 (510)
Q Consensus 222 ~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i 293 (510)
-.+.+.++-++|+|++++|.++..+ |.|-.|.++. |.. +........+.+.++++++|++++++.. .|.|.+
T Consensus 36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v 115 (346)
T COG2706 36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSV 115 (346)
T ss_pred ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEE
Confidence 3566788999999999999888654 6777777654 544 2222233344488999999999999984 579999
Q ss_pred EEcCC-CCeeEe--ecCCCCc----------eEEEEEecCCCCEEEEEeC-CCcEEEEECCCCeEeee----eeecCcee
Q 010470 294 WDVNS-GRVRHT--LTGHTDK----------VCAVDVSKISSRHVVSAAY-DRTLKVWDLHKGYCVNT----IIFHSNCN 355 (510)
Q Consensus 294 wd~~~-~~~~~~--~~~~~~~----------v~~i~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~----~~~~~~i~ 355 (510)
+-+.. |.+... ...|.+. +....+.| +++++++.+- -..|.+|++..|..... +.....+.
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPR 194 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPR 194 (346)
T ss_pred EEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcc
Confidence 99865 432221 2224444 88889999 7778777653 34799999987764332 23445689
Q ss_pred EEEEcCCCCEEEEec-CCCcEEEEECCCC--c--eeeeecc-----cccccEEEEEEcCCCCEEEEEecC-CcEEEEEcC
Q 010470 356 ALAFSMDGQTIFSGH-IDGNLRLWDIQTG--K--LLSEVAA-----HSLAAVTSISLSRSGNIILTSGRD-NLHNLFDIR 424 (510)
Q Consensus 356 ~i~~~~~~~~l~~~~-~dg~i~i~d~~~~--~--~~~~~~~-----~~~~~i~~i~~~~~~~~l~~~~~d-~~i~i~d~~ 424 (510)
.|.|+|++++..+.+ -+++|.+|..... + .++.+.. ........|.++|+|++|+++.+. ..|.+|.+.
T Consensus 195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 999999999887654 5889999988763 2 1222111 112567889999999999998754 467777765
Q ss_pred C--ceee--eEeecCCCeeecCceeEEEcCCCCEEEEEcCC-CeEEEEeCC--Ccceeeccc-ccCcCEEEEEEe
Q 010470 425 S--LEVC--GSLRATGNRVASNWSRSCISPDESYVAAGSAD-GSVYIWSIS--KADIVRTLK-EHTAPVLSCSWS 491 (510)
Q Consensus 425 ~--~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-g~i~iwd~~--~~~~~~~~~-~~~~~v~~~~~~ 491 (510)
. ++.. .....++.. .....|+++|++|++.+.+ ..|.+|.++ +|++-.... .......|+.|.
T Consensus 275 ~~~g~L~~~~~~~teg~~----PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 275 PDGGKLELVGITPTEGQF----PRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCCCEEEEEEEeccCCcC----CccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 3 3221 112222221 2236789999999988865 468888765 454433322 133344566664
No 269
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.46 E-value=2.6e-11 Score=102.63 Aligned_cols=256 Identities=19% Similarity=0.242 Sum_probs=168.0
Q ss_pred CCeEEEEeCCCCccee--cc-cccccceeEEEEec---CCC-EEEEEeCCCeEEEEEcCCCCeeEeecCCCC------ce
Q 010470 246 DKSIKLWDTNTGSLSS--TL-YGCLGSVLDLAITH---DNR-SVIAASSSNNLYVWDVNSGRVRHTLTGHTD------KV 312 (510)
Q Consensus 246 dg~i~iwd~~~~~~~~--~~-~~~~~~v~~~~~~~---~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~------~v 312 (510)
.|.+.+|++...+... ++ ......+..+.|.. +|. .++-+...|.|.+|..........+.+-.. ..
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4678899887665433 11 12344566677743 344 456667789999998765444444433211 24
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEECCCCeEee--eeeec-CceeEEEEcC-CCCEEEEecCCCcEEEEECC-CCceee
Q 010470 313 CAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN--TIIFH-SNCNALAFSM-DGQTIFSGHIDGNLRLWDIQ-TGKLLS 387 (510)
Q Consensus 313 ~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~-~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~-~~~~~~ 387 (510)
.++.|++ .+..++++..+|.+.+-+........ ....| -.+....|+. +.+.+++|+.||.+..||+| .++.+.
T Consensus 125 lslD~~~-~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 125 LSLDIST-SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eEEEeec-cCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 5678888 67778888889999866654443332 44444 3466677765 45688899999999999999 344444
Q ss_pred e-ecccccccEEEEEEcC-CCCEEEEEecCCcEEEEEcCC-ceeeeEeecCCCeeecCceeEEEcCC--CCEEEEEcCCC
Q 010470 388 E-VAAHSLAAVTSISLSR-SGNIILTSGRDNLHNLFDIRS-LEVCGSLRATGNRVASNWSRSCISPD--ESYVAAGSADG 462 (510)
Q Consensus 388 ~-~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~~~~dg 462 (510)
. ...|+ ..|.+|.-+| .+.++++|+.|..|++||.|+ ++++..- .+...+.++..+|. +..++++-.+|
T Consensus 204 ~n~kvH~-~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-----~v~GGVWRi~~~p~~~~~lL~~CMh~G 277 (339)
T KOG0280|consen 204 HNSKVHT-SGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-----KVGGGVWRIKHHPEIFHRLLAACMHNG 277 (339)
T ss_pred ecceeee-cceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-----ccccceEEEEecchhhhHHHHHHHhcC
Confidence 4 33444 8899998876 577999999999999999995 4443322 23345666888884 44566666666
Q ss_pred eEEEEeCCCcc-----eeecccccCcCEEEEEEeCCCCcEEEee-CCCeEE-Ec
Q 010470 463 SVYIWSISKAD-----IVRTLKEHTAPVLSCSWSGLGKPLASAD-KNGVVC-VW 509 (510)
Q Consensus 463 ~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~-iw 509 (510)
.+|-+...+. .+...+.|.+-+.+-.|......|+||+ .|+.++ +|
T Consensus 278 -~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 278 -AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred -ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeee
Confidence 7788776543 3344566777777777755445688865 466644 66
No 270
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=5.7e-11 Score=114.28 Aligned_cols=209 Identities=12% Similarity=0.100 Sum_probs=130.7
Q ss_pred eccccccceEEEEEecCCCEE---EEeeCCC--eEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeC-CC----
Q 010470 220 KINAHEGGCASILFEYNSARL---ISGGQDK--SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS-SN---- 289 (510)
Q Consensus 220 ~~~~h~~~v~~~~~s~~~~~l---~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~---- 289 (510)
.+......+.+-.|||||+.+ ++...+| .|.+.++.++.... +....+......|+|||+.|+..+. +|
T Consensus 179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di 257 (428)
T PRK01029 179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDL 257 (428)
T ss_pred EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcce
Confidence 344455567788999999752 2444343 57888888775432 2333445567899999998887653 22
Q ss_pred eEEEEEcCCC---CeeEeecCCCCceEEEEEecCCCCEEEEEe-CCCcEEEE--ECCC-CeEeeeeee-cCceeEEEEcC
Q 010470 290 NLYVWDVNSG---RVRHTLTGHTDKVCAVDVSKISSRHVVSAA-YDRTLKVW--DLHK-GYCVNTIIF-HSNCNALAFSM 361 (510)
Q Consensus 290 ~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~-~dg~i~iw--d~~~-~~~~~~~~~-~~~i~~i~~~~ 361 (510)
.+.+|++..+ ........+........|+| ++..|+..+ .+|...+| ++.. +.....+.. ...+....|+|
T Consensus 258 ~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP 336 (428)
T PRK01029 258 FIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP 336 (428)
T ss_pred eEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECC
Confidence 3444776653 33333333334456789999 676655544 46654454 5432 222333332 23467889999
Q ss_pred CCCEEEEecCC---CcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEec---CCcEEEEEcCCceeeeEe
Q 010470 362 DGQTIFSGHID---GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR---DNLHNLFDIRSLEVCGSL 432 (510)
Q Consensus 362 ~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~ 432 (510)
||+.|+..+.+ ..|.+||+.+++... +.... ..+....|+|||+.|+.... ...|.++|+.+++.....
T Consensus 337 DG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~-~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 337 DGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSP-ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCC-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 99988865432 369999998887543 33222 45678999999998875443 346888898877654444
No 271
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1.2e-10 Score=111.15 Aligned_cols=212 Identities=16% Similarity=0.152 Sum_probs=160.5
Q ss_pred CCCccceeeccccccceEEEEEecCC------------CEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecC-
Q 010470 212 TVPSTCKHKINAHEGGCASILFEYNS------------ARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHD- 278 (510)
Q Consensus 212 ~~~~~~~~~~~~h~~~v~~~~~s~~~------------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~- 278 (510)
....+.+..+.-|...|+.+.|.|-. -+||++...|.|.+||...+..+..+..|..++.+++|-+.
T Consensus 42 s~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~r 121 (1062)
T KOG1912|consen 42 SRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPAR 121 (1062)
T ss_pred hhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeecc
Confidence 34566778889999999999998732 25778888899999999999998999999999999999663
Q ss_pred --C-CEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC-------CeEeeee
Q 010470 279 --N-RSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK-------GYCVNTI 348 (510)
Q Consensus 279 --~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~ 348 (510)
. ..|++-.....+.+|+..+|+....+........|+.+.|.+...+...+..|.+.+.+.-. |+..+..
T Consensus 122 d~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~ 201 (1062)
T KOG1912|consen 122 DDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQIT 201 (1062)
T ss_pred CcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEe
Confidence 3 45666677889999999999999998877788889999999888888888888888876531 2222111
Q ss_pred eecCc--------------------------eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEE
Q 010470 349 IFHSN--------------------------CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISL 402 (510)
Q Consensus 349 ~~~~~--------------------------i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~ 402 (510)
..++. +..++|+|.-+.++.......+.++|++-..++..+.... +.+.-+.+
T Consensus 202 sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier-~~akfv~v 280 (1062)
T KOG1912|consen 202 SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIER-GGAKFVDV 280 (1062)
T ss_pred cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEecc-CCcceeEe
Confidence 11100 2235667766655555566789999998888877777665 55666677
Q ss_pred cCCC--CEEEEEecCCcEEEEEcC
Q 010470 403 SRSG--NIILTSGRDNLHNLFDIR 424 (510)
Q Consensus 403 ~~~~--~~l~~~~~d~~i~i~d~~ 424 (510)
-|++ ..|++...||.+.+|-.+
T Consensus 281 lP~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 281 LPDPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred ccCCCcceEEEEecCCeEEEEEee
Confidence 6665 478899999999888654
No 272
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.42 E-value=3.9e-11 Score=101.54 Aligned_cols=198 Identities=17% Similarity=0.179 Sum_probs=140.9
Q ss_pred cceEEEEEec---CCC-EEEEeeCCCeEEEEeCCCCcceecccccc------cceeEEEEecCCCEEEEEeCCCeEEEEE
Q 010470 226 GGCASILFEY---NSA-RLISGGQDKSIKLWDTNTGSLSSTLYGCL------GSVLDLAITHDNRSVIAASSSNNLYVWD 295 (510)
Q Consensus 226 ~~v~~~~~s~---~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~d~~i~iwd 295 (510)
..+..+.|.. +|. .++-+..+|.|.+|..........+.+-. ....++.|++.+..++++..+|.+.+-+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 3466666653 455 56667778999999765433322222211 1245788999999999999999998666
Q ss_pred cCCCCee--EeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECC-CCeEeee--eeecCceeEEEEcC-CCCEEEEe
Q 010470 296 VNSGRVR--HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH-KGYCVNT--IIFHSNCNALAFSM-DGQTIFSG 369 (510)
Q Consensus 296 ~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~--~~~~~~i~~i~~~~-~~~~l~~~ 369 (510)
....... +.++.|.-+.+...|+..+++++++||.|+.+..||++ .++.+.. ..+...|.+|.-+| .+.+|++|
T Consensus 150 ~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TG 229 (339)
T KOG0280|consen 150 ETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATG 229 (339)
T ss_pred cceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEe
Confidence 5555443 47889999999999998888999999999999999999 3333333 23345688888876 67899999
Q ss_pred cCCCcEEEEECC-CCceeeeecccccccEEEEEEcCCCC-EEEEEecCCcEEEEEcCC
Q 010470 370 HIDGNLRLWDIQ-TGKLLSEVAAHSLAAVTSISLSRSGN-IILTSGRDNLHNLFDIRS 425 (510)
Q Consensus 370 ~~dg~i~i~d~~-~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~i~d~~~ 425 (510)
+.|-.|++||.| .++++..-... +.|..+.++|.-. .+++++.-+-.+|.+...
T Consensus 230 sYDe~i~~~DtRnm~kPl~~~~v~--GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~ 285 (339)
T KOG0280|consen 230 SYDECIRVLDTRNMGKPLFKAKVG--GGVWRIKHHPEIFHRLLAACMHNGAKILDSSD 285 (339)
T ss_pred ccccceeeeehhcccCccccCccc--cceEEEEecchhhhHHHHHHHhcCceEEEecc
Confidence 999999999999 46776655544 8999999999533 233333333455666553
No 273
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=1.1e-12 Score=120.08 Aligned_cols=239 Identities=17% Similarity=0.294 Sum_probs=169.5
Q ss_pred ecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC-------CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCc
Q 010470 261 STLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS-------GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRT 333 (510)
Q Consensus 261 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~ 333 (510)
..+.||...|..++--.+.+.+++++.|++|++|.+.. ..+..++..|..+|.++.|.. +.++++++ ||.
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIASC--DGG 805 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeeec--cCc
Confidence 45678888888888777888899999999999999863 237778899999999999987 66666655 799
Q ss_pred EEEEECCCCeEeeeeee---cCceeEEEEcC--CCCEEEEe-cCCCcEEEEECCCCceeeeeccc----ccccEEEEEEc
Q 010470 334 LKVWDLHKGYCVNTIIF---HSNCNALAFSM--DGQTIFSG-HIDGNLRLWDIQTGKLLSEVAAH----SLAAVTSISLS 403 (510)
Q Consensus 334 i~iwd~~~~~~~~~~~~---~~~i~~i~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~----~~~~i~~i~~~ 403 (510)
|.+||.--++.+..+.. ++.+..+..-| +...++.| +...+|+++|.+.+.....++.. ...-+.++++.
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 99999987776654432 23333344334 34445544 67889999999998776665432 22568999999
Q ss_pred CCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEE-EeCCCcceeecccccC
Q 010470 404 RSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYI-WSISKADIVRTLKEHT 482 (510)
Q Consensus 404 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~~ 482 (510)
+.|+.++++-.+|+|.+.|.++|..+..++...-.... + -.|..+.++....|.++.| |...+|......+...
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllq----l-aapsdq~L~~saldHslaVnWhaldgimh~q~kppp 960 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQ----L-AAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPP 960 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhh----h-cCchhHHHHhhcccceeEeeehhcCCeeeeccCCCC
Confidence 99999999999999999999999988776544332221 2 2577788888888999999 9877776555544322
Q ss_pred cCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 483 APVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 483 ~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
.+..-+ -.-|..|+++.....+.+|
T Consensus 961 epahfl--qsvgpSLV~a~~Gn~lgVY 985 (1034)
T KOG4190|consen 961 EPAHFL--QSVGPSLVTAQNGNILGVY 985 (1034)
T ss_pred cchhhh--hccCceeEEeccCcEEEEE
Confidence 221111 1124455555555455544
No 274
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.37 E-value=3.9e-12 Score=131.22 Aligned_cols=222 Identities=16% Similarity=0.275 Sum_probs=162.6
Q ss_pred ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeec-CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 010470 265 GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLT-GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY 343 (510)
Q Consensus 265 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 343 (510)
.+-..|.++.-+|...+.++|+.||.|++|....+..+..+. .....|+.+.|+. .|+.+..+..||.+.+|.+. .+
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccC-Cc
Confidence 345677788888999999999999999999998888776664 2347899999998 78888888889999999986 44
Q ss_pred EeeeeeecC-ceeEEEEcCCCCEEEEe---cCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEE
Q 010470 344 CVNTIIFHS-NCNALAFSMDGQTIFSG---HIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHN 419 (510)
Q Consensus 344 ~~~~~~~~~-~i~~i~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~ 419 (510)
+......|. ....+.|-. ..+++. +.++++.+||.--.....-+...+.+.++++++-|....|++|+.+|.|.
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVC 2361 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEE
Confidence 444444443 356666653 445543 35789999997533222222233348999999999999999999999999
Q ss_pred EEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccc-c--CcC--E--EEEEEeC
Q 010470 420 LFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE-H--TAP--V--LSCSWSG 492 (510)
Q Consensus 420 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~--~~~--v--~~~~~~~ 492 (510)
+||++..+..+.+.. +. ...+|++|+..|.++||++.....+.+++. | .+- + ..+-. .
T Consensus 2362 l~D~rqrql~h~~~~-------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v-~ 2426 (2439)
T KOG1064|consen 2362 LFDIRQRQLRHTFQA-------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINV-G 2426 (2439)
T ss_pred EeehHHHHHHHHhhh-------------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeee-c
Confidence 999998777666543 23 567899999999999999998887777754 2 111 0 11222 2
Q ss_pred CCCcEEEeeCCCe
Q 010470 493 LGKPLASADKNGV 505 (510)
Q Consensus 493 ~~~~l~s~~~dg~ 505 (510)
.++.|.+|+.||+
T Consensus 2427 ~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2427 QCNRIFSCGADGT 2439 (2439)
T ss_pred cCceEEEecCCCC
Confidence 2456888888874
No 275
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=1.4e-11 Score=116.21 Aligned_cols=234 Identities=15% Similarity=0.177 Sum_probs=167.2
Q ss_pred cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC---------------eeEeecCCCCceEEEEEecCCCCEEEEEeC
Q 010470 266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR---------------VRHTLTGHTDKVCAVDVSKISSRHVVSAAY 330 (510)
Q Consensus 266 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---------------~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~ 330 (510)
......|+.|+....++++|+.||.+++..+.+.. .-+++.||...|..+.|+. ....+-++..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTtSDt 91 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLTTSDT 91 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-ccccccccCC
Confidence 34567899999999999999999999999876431 2346789999999999987 7788999999
Q ss_pred CCcEEEEECCCCeEeeeeeec---CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCC
Q 010470 331 DRTLKVWDLHKGYCVNTIIFH---SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGN 407 (510)
Q Consensus 331 dg~i~iwd~~~~~~~~~~~~~---~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 407 (510)
+|.|.+|-+-.|......... +-|.+++|+.+|..++....||.|.+=.+. |..+.--.... .....+.|++|..
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgKeLkg-~~l~hv~ws~D~~ 169 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGKELKG-QLLAHVLWSEDLE 169 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecchhcch-heccceeecccHH
Confidence 999999998877655444333 448999999999999999999999887764 33332222211 3455789999999
Q ss_pred EEEEEecCCcEEEEEcCCcee-----ee--EeecCCCeeecCceeEEE--------cCCCCEEEEEcCCCeEEEEeCCCc
Q 010470 408 IILTSGRDNLHNLFDIRSLEV-----CG--SLRATGNRVASNWSRSCI--------SPDESYVAAGSADGSVYIWSISKA 472 (510)
Q Consensus 408 ~l~~~~~d~~i~i~d~~~~~~-----~~--~~~~~~~~~~~~~~~~~~--------s~~~~~l~~~~~dg~i~iwd~~~~ 472 (510)
.++.+-.+|.+.+||....-. .. ...+........+..++| -|+-..++++-.+|.+.|..-.+.
T Consensus 170 ~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND 249 (1189)
T KOG2041|consen 170 QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND 249 (1189)
T ss_pred HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC
Confidence 999999999999999753210 00 000000000011112332 468889999999999988865443
Q ss_pred ceeecccccCcCEEEEEEeCCCCcEEEeeCC
Q 010470 473 DIVRTLKEHTAPVLSCSWSGLGKPLASADKN 503 (510)
Q Consensus 473 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 503 (510)
.....+. ..-.+.+..|+++|..|+.||.+
T Consensus 250 ~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 250 PEPVVVD-TGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred CCCeEEe-cccEeecceecCCCcEEEEccCc
Confidence 3222222 22568899999999999999865
No 276
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.37 E-value=5e-12 Score=119.59 Aligned_cols=280 Identities=15% Similarity=0.252 Sum_probs=187.4
Q ss_pred ccceEEEEEecCCCEEEEeeCCCeEEEEeCC-CCcceeccc-ccccceeEEEEecC--CCEEEEEeCCCeEEEEEcCC--
Q 010470 225 EGGCASILFEYNSARLISGGQDKSIKLWDTN-TGSLSSTLY-GCLGSVLDLAITHD--NRSVIAASSSNNLYVWDVNS-- 298 (510)
Q Consensus 225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~-- 298 (510)
.+++.++.++|.|+-++.++.-| +.+.|+. .+.+..-+. ...-.|-.+.|+|. -.+.++......-.+|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 46788999999999999999877 4455554 344333322 12234566778765 34666666667778998853
Q ss_pred -CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe-Eeeeee-ecCceeEEEEcCCCCEEEEecCCCcE
Q 010470 299 -GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY-CVNTII-FHSNCNALAFSMDGQTIFSGHIDGNL 375 (510)
Q Consensus 299 -~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i 375 (510)
......+.+|...|+.+.|+|.....+++++.|-.+..||+++.. ++..+. -+.....+.|+.....+.+.+....|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 335566789999999999999888999999999999999998753 333332 34557789998754445555556789
Q ss_pred EEEECCCCc-eeeeecccccccEEEEEEcCC-CCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCC
Q 010470 376 RLWDIQTGK-LLSEVAAHSLAAVTSISLSRS-GNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES 453 (510)
Q Consensus 376 ~i~d~~~~~-~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 453 (510)
++||.+.|. ++..++.+. ..+.++.|..- ...+.+++.|++|+.||..+......... ....++..-++-|-|.
T Consensus 183 ~vwd~r~gs~pl~s~K~~v-s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v---tt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHV-SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV---TTNFPIWRGRYLPFGE 258 (1081)
T ss_pred EEEeccCCCcceEEecccc-eeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec---cccCcceeccccccCc
Confidence 999999864 555666654 78888888753 44678899999999999875332111111 1111222234445333
Q ss_pred --EEEEEcCCCeEEEE---------eCCC-cceeecccccCcCEEEEEEeCCC----------CcEEEeeCCCeEEEc
Q 010470 454 --YVAAGSADGSVYIW---------SISK-ADIVRTLKEHTAPVLSCSWSGLG----------KPLASADKNGVVCVW 509 (510)
Q Consensus 454 --~l~~~~~dg~i~iw---------d~~~-~~~~~~~~~~~~~v~~~~~~~~~----------~~l~s~~~dg~i~iw 509 (510)
++.---.+..|.++ +..+ ..++.++.||...|..+-|-..+ -.|+|-+.|..+++|
T Consensus 259 g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 259 GYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred eeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 22211112234444 3333 46788999999988877774322 269999999999999
No 277
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.37 E-value=5.8e-10 Score=107.15 Aligned_cols=256 Identities=13% Similarity=0.144 Sum_probs=168.0
Q ss_pred CCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCce----
Q 010470 237 SARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKV---- 312 (510)
Q Consensus 237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v---- 312 (510)
+..++.++.+|.+..+|..+|+.+............... .+..+++++.++.+..+|..+|+.+..+......+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 457778888999999999999987766543221111222 24567778889999999999999888776431111
Q ss_pred -EEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc--------eeEEEEcC--CCCEEEEecCCCcEEEEECC
Q 010470 313 -CAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN--------CNALAFSM--DGQTIFSGHIDGNLRLWDIQ 381 (510)
Q Consensus 313 -~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------i~~i~~~~--~~~~l~~~~~dg~i~i~d~~ 381 (510)
.+... .+..++.++.+|.+..+|..+|+.+.......+ ...+..+| .+..+++++.+|.+..+|..
T Consensus 198 ~~sP~v---~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 198 ESAPAT---AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred CCCCEE---ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence 11111 124566777899999999999987766543211 11111222 35567777789999999999
Q ss_pred CCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC
Q 010470 382 TGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD 461 (510)
Q Consensus 382 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 461 (510)
+|+.+....... ...+. ..+..+++++.+|.+..+|..+++.+............ ...+ .+.+|+.++.+
T Consensus 275 tG~~~W~~~~~~---~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~---sp~v--~~g~l~v~~~~ 344 (394)
T PRK11138 275 SGQIVWKREYGS---VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLT---APVL--YNGYLVVGDSE 344 (394)
T ss_pred CCCEEEeecCCC---ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCccc---CCEE--ECCEEEEEeCC
Confidence 998876654321 11222 24677888889999999999998775544321111111 1112 35678889999
Q ss_pred CeEEEEeCCCcceeecccccCcCEE-EEEEeCCCCcEEEeeCCCeEEEc
Q 010470 462 GSVYIWSISKADIVRTLKEHTAPVL-SCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 462 g~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
|.|+++|..+|+.+...+.....+. ...+ .+..|+.++.||.|+.+
T Consensus 345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~ 391 (394)
T PRK11138 345 GYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAI 391 (394)
T ss_pred CEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEE
Confidence 9999999999998877654333332 2233 24478888999998875
No 278
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.37 E-value=5.2e-12 Score=130.33 Aligned_cols=198 Identities=14% Similarity=0.245 Sum_probs=159.8
Q ss_pred cccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc-ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC
Q 010470 222 NAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY-GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR 300 (510)
Q Consensus 222 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 300 (510)
+.|-..|.++.-+|.-.+.+||+.||.|++|....+..+..+. .....|+.+.|+.+|+.+..+..||.+.+|... .+
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Cc
Confidence 3344567888888888899999999999999998887766554 234889999999999999999999999999976 67
Q ss_pred eeEeecCCCCceEEEEEecCCCCEEEEEe---CCCcEEEEECCCC---eEeeeeeecCceeEEEEcCCCCEEEEecCCCc
Q 010470 301 VRHTLTGHTDKVCAVDVSKISSRHVVSAA---YDRTLKVWDLHKG---YCVNTIIFHSNCNALAFSMDGQTIFSGHIDGN 374 (510)
Q Consensus 301 ~~~~~~~~~~~v~~i~~~~~~~~~l~s~~---~dg~i~iwd~~~~---~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~ 374 (510)
+....+.|+.....+.|.. ..+++++ .++.+.+||..-. .++. ..+.+.++++++-|....|++|+.+|.
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGE 2359 (2439)
T ss_pred ceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCc
Confidence 7777888998888888864 5566654 4689999997532 2333 334466999999999999999999999
Q ss_pred EEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecC
Q 010470 375 LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRAT 435 (510)
Q Consensus 375 i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 435 (510)
|++||++..+....+.. ++ ...++++++..|.++||++.....+..+...
T Consensus 2360 v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2360 VCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred EEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCchh
Confidence 99999998877766654 33 5678999999999999999988777766543
No 279
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.37 E-value=2e-09 Score=111.95 Aligned_cols=278 Identities=14% Similarity=0.161 Sum_probs=182.5
Q ss_pred cccceEEEEEecCCCEEEEeeCCCeEEEE----eCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 010470 224 HEGGCASILFEYNSARLISGGQDKSIKLW----DTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG 299 (510)
Q Consensus 224 h~~~v~~~~~s~~~~~l~s~~~dg~i~iw----d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 299 (510)
..+.|.++.|-++...++.+..+|.|.++ +..+... ...-.-...|.+++||||+..|+..+.++++.+.+-. .
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-f 151 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD-F 151 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-c
Confidence 45689999999999999999999999999 5443332 2222346789999999999999999999988776421 1
Q ss_pred Ce----------------e--------EeecC------------------------CCCceEEEEEecCCCCEEEEEeC-
Q 010470 300 RV----------------R--------HTLTG------------------------HTDKVCAVDVSKISSRHVVSAAY- 330 (510)
Q Consensus 300 ~~----------------~--------~~~~~------------------------~~~~v~~i~~~~~~~~~l~s~~~- 330 (510)
.+ + ..|.| +.+.-..|+|-. |+.+|++.+.
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG-DG~yFAVss~~ 230 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG-DGEYFAVSSVE 230 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC-CCcEEEEEEEE
Confidence 10 0 01110 223445688877 8888888764
Q ss_pred -----CCcEEEEECCCCeEeeeeeecCc-eeEEEEcCCCCEEEEecC---CCcEEEEECCCCceeeeecc---cccccEE
Q 010470 331 -----DRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHI---DGNLRLWDIQTGKLLSEVAA---HSLAAVT 398 (510)
Q Consensus 331 -----dg~i~iwd~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~---~~~~~i~ 398 (510)
-+.++||+-+ |....+...-.. -.+++|.|.|++|++... ...|.+|. ++|-.-..|.. +....|.
T Consensus 231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~ 308 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVI 308 (928)
T ss_pred cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceee
Confidence 2579999965 654433332222 468999999999997654 34677787 45544444433 2336899
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEEcCCceeeeE--eecCCCeeecCceeEEEcCC-CCEEEEEcCCCeEEEEeC----CC
Q 010470 399 SISLSRSGNIILTSGRDNLHNLFDIRSLEVCGS--LRATGNRVASNWSRSCISPD-ESYVAAGSADGSVYIWSI----SK 471 (510)
Q Consensus 399 ~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~i~iwd~----~~ 471 (510)
.+.|++++..|+....|. |.+|-..+..-..+ +....... ...+.|+|. ...|...+.+|.+..++. ..
T Consensus 309 ~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~---~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~ 384 (928)
T PF04762_consen 309 ELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSES---VNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSR 384 (928)
T ss_pred EEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCC---CCceEECCCCCCEEEEEecCCcEEEEEEEEEEEe
Confidence 999999999999977555 99999887554322 22221111 112678884 334555655565554432 11
Q ss_pred cc--------eeec----------c-----c--------ccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 472 AD--------IVRT----------L-----K--------EHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 472 ~~--------~~~~----------~-----~--------~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+. .+.. + + .-..+|.+++|++++..+++-..||.|.+|.
T Consensus 385 s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 385 SPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred cCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 10 0111 1 0 1346799999999988899999999998873
No 280
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.37 E-value=6.3e-11 Score=101.07 Aligned_cols=241 Identities=13% Similarity=0.237 Sum_probs=160.3
Q ss_pred cceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc-----ceecccccc------------cceeEEEEecCC--CEEEEEe
Q 010470 226 GGCASILFEYNSARLISGGQDKSIKLWDTNTGS-----LSSTLYGCL------------GSVLDLAITHDN--RSVIAAS 286 (510)
Q Consensus 226 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~~~~ 286 (510)
..|+++.|...|.||++|...|.|.+|.-+... ....+++|. ..|..+.|..++ ..++..+
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 469999999999999999999999999765432 233355553 357778886654 3578888
Q ss_pred CCCeEEEEEcCCCC------------------------------------------eeEee-cCCCCceEEEEEecCCCC
Q 010470 287 SSNNLYVWDVNSGR------------------------------------------VRHTL-TGHTDKVCAVDVSKISSR 323 (510)
Q Consensus 287 ~d~~i~iwd~~~~~------------------------------------------~~~~~-~~~~~~v~~i~~~~~~~~ 323 (510)
.|.+|++|.+.... +.+.+ ..|...+.++.++. +..
T Consensus 107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~e 185 (460)
T COG5170 107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DKE 185 (460)
T ss_pred CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-chh
Confidence 99999999875320 00111 35667788888887 666
Q ss_pred EEEEEeCCCcEEEEECCCCe---Eeeeeeec------CceeEEEEcCC-CCEEEEecCCCcEEEEECCCCce------ee
Q 010470 324 HVVSAAYDRTLKVWDLHKGY---CVNTIIFH------SNCNALAFSMD-GQTIFSGHIDGNLRLWDIQTGKL------LS 387 (510)
Q Consensus 324 ~l~s~~~dg~i~iwd~~~~~---~~~~~~~~------~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~------~~ 387 (510)
.++++. |-.|.+|++.-.. .+-.+..+ .-|++..|+|. .+.+.-.+..|.|++.|++.... +.
T Consensus 186 t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 666665 7889999986322 12222222 12788999994 45666677889999999984321 11
Q ss_pred ee---------cccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC-ceeeeEeecCCCe-----------eecCceeE
Q 010470 388 EV---------AAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS-LEVCGSLRATGNR-----------VASNWSRS 446 (510)
Q Consensus 388 ~~---------~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~-----------~~~~~~~~ 446 (510)
.. ...-...|..+.|+++|+++++-+. .+++|||.+. ..++.++..+... ....-..+
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFei 343 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEI 343 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEE
Confidence 11 0111257889999999999987644 4899999985 4455555433211 01112336
Q ss_pred EEcCCCCEEEEEcCCCeEEEEeC
Q 010470 447 CISPDESYVAAGSADGSVYIWSI 469 (510)
Q Consensus 447 ~~s~~~~~l~~~~~dg~i~iwd~ 469 (510)
.||.|...+.+|+..+..-||-+
T Consensus 344 sfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 344 SFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EecCCcccccccccccceeeecc
Confidence 78888888888888777767653
No 281
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.37 E-value=9.8e-10 Score=98.09 Aligned_cols=219 Identities=21% Similarity=0.233 Sum_probs=146.1
Q ss_pred CCeEEEEeCCCCcceecccccccceeEEE--EecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCC
Q 010470 246 DKSIKLWDTNTGSLSSTLYGCLGSVLDLA--ITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR 323 (510)
Q Consensus 246 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 323 (510)
+|.|..||..+|+.+..... ........ ..+++..+++++.++.++.||..+|+.+..+.. ...+...... .+.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~--~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV--DGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE--ETT
T ss_pred CCEEEEEECCCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee--ccc
Confidence 68899999999988777643 11122222 334677788889999999999999998887764 2222111111 356
Q ss_pred EEEEEeCCCcEEEEECCCCeEeeee-eecCc----eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccc---
Q 010470 324 HVVSAAYDRTLKVWDLHKGYCVNTI-IFHSN----CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLA--- 395 (510)
Q Consensus 324 ~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~----i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--- 395 (510)
.++.++.++.+..+|..+|+.+... ....+ ........++..++++..+|.|..+|+++|+.+.........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 6677778889999999999998884 33211 122223334888888888999999999999998877663311
Q ss_pred c------EEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470 396 A------VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI 469 (510)
Q Consensus 396 ~------i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~ 469 (510)
. +.+-.+..++ .++.++.++.+.-+|+.+++...... ... .. ....+++..|++++.++.|..||+
T Consensus 158 ~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~-~~-----~~~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 158 PISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISG-IY-----SLPSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp -EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS--EC-----ECEECCCTEEEEEETTTEEEEEET
T ss_pred ceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CCC-cc-----CCceeeCCEEEEEeCCCEEEEEEC
Confidence 1 1222222344 77777777754444999998654322 222 11 124567888888889999999999
Q ss_pred CCcceee
Q 010470 470 SKADIVR 476 (510)
Q Consensus 470 ~~~~~~~ 476 (510)
.+|+.+.
T Consensus 230 ~tG~~~W 236 (238)
T PF13360_consen 230 KTGKVVW 236 (238)
T ss_dssp TTTEEEE
T ss_pred CCCCEEe
Confidence 9998764
No 282
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.35 E-value=6.4e-09 Score=93.04 Aligned_cols=218 Identities=15% Similarity=0.160 Sum_probs=143.8
Q ss_pred EEEEec-CCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee
Q 010470 272 DLAITH-DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF 350 (510)
Q Consensus 272 ~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 350 (510)
+++|.+ ++.++++....+.|+.|+..++.... +.... ..++.+...+ ..++.+.. +.+.++|+.+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~-~~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADS-GGIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEET-TCEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEc-CceEEEecCCCcEEEEeec
Confidence 578998 56656665678999999988775433 22222 6677777324 55555554 4556669998866554443
Q ss_pred ------cCceeEEEEcCCCCEEEEecCC--------CcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEE-EEecC
Q 010470 351 ------HSNCNALAFSMDGQTIFSGHID--------GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIIL-TSGRD 415 (510)
Q Consensus 351 ------~~~i~~i~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d 415 (510)
...++.+++.|+|++.++.... |.|+.++.. ++.......- ...+.|+|+|+++.|+ +.+..
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~--~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL--GFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE--SSEEEEEEETTSSEEEEEETTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc--ccccceEECCcchheeeccccc
Confidence 1238999999999977765433 568888876 5544333332 6789999999999775 56677
Q ss_pred CcEEEEEcCCce--e--eeEe-ecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEE
Q 010470 416 NLHNLFDIRSLE--V--CGSL-RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSW 490 (510)
Q Consensus 416 ~~i~i~d~~~~~--~--~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 490 (510)
+.|..|++.... . ...+ ...... .....++++.+|++.++....+.|.+++.. |+.+..+......+++++|
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~--g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGP--GYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSS--CEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCC--cCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 889999986321 1 1122 111111 112348999999998888888999999976 8888877766568999999
Q ss_pred e-CCCCcEEEe
Q 010470 491 S-GLGKPLASA 500 (510)
Q Consensus 491 ~-~~~~~l~s~ 500 (510)
. ++.+.|+..
T Consensus 233 gg~~~~~L~vT 243 (246)
T PF08450_consen 233 GGPDGKTLYVT 243 (246)
T ss_dssp ESTTSSEEEEE
T ss_pred ECCCCCEEEEE
Confidence 5 665655443
No 283
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=4.5e-09 Score=93.20 Aligned_cols=256 Identities=15% Similarity=0.143 Sum_probs=159.2
Q ss_pred EEEEeCCCCcceecccccccceeEEEEecCCC-EEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEE
Q 010470 249 IKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR-SVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVS 327 (510)
Q Consensus 249 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s 327 (510)
|++.+..+.+....+.++...|.+++|+|... ++..++.++.|.|.|+++..++..+..+ ..+++++|.-++.++|+.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 67777766666677788899999999999988 7888999999999999999999888877 889999999888899999
Q ss_pred EeCCCcEEEEECCCCeE-eeeeeec---CceeEE------EEcCCCCEEEEecCCCcEEEEECC--CCceeeeecccccc
Q 010470 328 AAYDRTLKVWDLHKGYC-VNTIIFH---SNCNAL------AFSMDGQTIFSGHIDGNLRLWDIQ--TGKLLSEVAAHSLA 395 (510)
Q Consensus 328 ~~~dg~i~iwd~~~~~~-~~~~~~~---~~i~~i------~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~ 395 (510)
|..+|.|.|||++...- +..+... .++..+ ...+.|.+++....+ +..|.+. .+...........+
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG 331 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPG 331 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCc
Confidence 99999999999985432 1111111 122222 223345555544443 4556553 22333333333336
Q ss_pred cEEEEEEcCCCCEEEEEecCC----cEE----EEEcCCceeeeEee-cCCCeeecC---ceeEEEcCCCCEEEE-EcCCC
Q 010470 396 AVTSISLSRSGNIILTSGRDN----LHN----LFDIRSLEVCGSLR-ATGNRVASN---WSRSCISPDESYVAA-GSADG 462 (510)
Q Consensus 396 ~i~~i~~~~~~~~l~~~~~d~----~i~----i~d~~~~~~~~~~~-~~~~~~~~~---~~~~~~s~~~~~l~~-~~~dg 462 (510)
...++.+.+..+.++...+.+ .++ -.|..++.++...+ ...+..... -..+.-.++.++|+. |+..+
T Consensus 332 ~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn 411 (463)
T KOG1645|consen 332 ICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTN 411 (463)
T ss_pred ceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcc
Confidence 777778877666666554431 011 11222333322221 110110000 001112345566554 55567
Q ss_pred eEEEEeCCCcceeecccccCcCEEEEEEeC-CCC-cEEEeeCCCeEEEc
Q 010470 463 SVYIWSISKADIVRTLKEHTAPVLSCSWSG-LGK-PLASADKNGVVCVW 509 (510)
Q Consensus 463 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~-~l~s~~~dg~i~iw 509 (510)
.+.+||..+++.+.++.-. .+|.+++... +|. +|++-. |..++||
T Consensus 412 ~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LT-d~~v~Iy 458 (463)
T KOG1645|consen 412 ELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLT-DDRVHIY 458 (463)
T ss_pred eeEEeccchhheeeecccC-cceeecceeecCCcchhhhee-cceEEEE
Confidence 8999999999999988744 6888876543 333 555554 4466665
No 284
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.34 E-value=8.2e-09 Score=92.36 Aligned_cols=217 Identities=16% Similarity=0.143 Sum_probs=147.2
Q ss_pred EEEEec-CCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEe-cCCCEEEEEeCCCeEEEEEcCCCCeeEeecC
Q 010470 230 SILFEY-NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT-HDNRSVIAASSSNNLYVWDVNSGRVRHTLTG 307 (510)
Q Consensus 230 ~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 307 (510)
+++|.+ ++.++++....+.|..|+..++.... +.. .. ...+++. ++ ..++++...+ +.++|+.+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~-~~-~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL-PG-PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES-SS-EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec-CC-CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 578888 77777787788999999998876533 211 11 6778888 55 5566666544 55569888865433332
Q ss_pred -----CCCceEEEEEecCCCCEEEEEeCC--------CcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEE-EecCCC
Q 010470 308 -----HTDKVCAVDVSKISSRHVVSAAYD--------RTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIF-SGHIDG 373 (510)
Q Consensus 308 -----~~~~v~~i~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~dg 373 (510)
.....+.+++.| ++++.++.... |.|..++.. ++.......-...+.++|+|+++.|+ +-+..+
T Consensus 79 ~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccc
Confidence 345678899999 77777765543 568888887 66555555556689999999999776 567788
Q ss_pred cEEEEECCCCce----eeeec-ccc-cccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEE
Q 010470 374 NLRLWDIQTGKL----LSEVA-AHS-LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSC 447 (510)
Q Consensus 374 ~i~i~d~~~~~~----~~~~~-~~~-~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (510)
.|..|++..... ...+. ... .+.+..++++.+|++.++....+.|.++|.. ++.+..+..+.... +.++
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~----t~~~ 231 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRP----TNCA 231 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSE----EEEE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCE----EEEE
Confidence 899999853221 12221 111 1358899999999999988889999999988 88877777663333 3478
Q ss_pred E-cCCCCEEEEE
Q 010470 448 I-SPDESYVAAG 458 (510)
Q Consensus 448 ~-s~~~~~l~~~ 458 (510)
| .++.+.|++.
T Consensus 232 fgg~~~~~L~vT 243 (246)
T PF08450_consen 232 FGGPDGKTLYVT 243 (246)
T ss_dssp EESTTSSEEEEE
T ss_pred EECCCCCEEEEE
Confidence 8 4665655543
No 285
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.34 E-value=2.7e-09 Score=96.48 Aligned_cols=218 Identities=13% Similarity=0.191 Sum_probs=154.5
Q ss_pred EEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecC-----------CCCceEEEE-EecCCCCEEEEEeCCCcEEEEECCC
Q 010470 274 AITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTG-----------HTDKVCAVD-VSKISSRHVVSAAYDRTLKVWDLHK 341 (510)
Q Consensus 274 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----------~~~~v~~i~-~~~~~~~~l~s~~~dg~i~iwd~~~ 341 (510)
..+.||+.++.. ..|.|++||..+.+....--+ ...++.-+. |++.++.+++..| .|...+.+...
T Consensus 273 ~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~ 350 (668)
T COG4946 273 NANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWD 350 (668)
T ss_pred ccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCC
Confidence 345688877654 447899999876553221111 001111122 4555788888888 68888888776
Q ss_pred CeEeeeeeecCceeEEEEcCCCCEEEEecCCC-cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEE
Q 010470 342 GYCVNTIIFHSNCNALAFSMDGQTIFSGHIDG-NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNL 420 (510)
Q Consensus 342 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i 420 (510)
+..++ +.....|.-..+..++.-++.|..|| .+-|||.++++.......- +.|.++..+|+|++++++.....+.+
T Consensus 351 ~~~iq-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~l--g~I~av~vs~dGK~~vvaNdr~el~v 427 (668)
T COG4946 351 GYSIQ-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDL--GNIEAVKVSPDGKKVVVANDRFELWV 427 (668)
T ss_pred CeeEE-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCc--cceEEEEEcCCCcEEEEEcCceEEEE
Confidence 65544 34445587778877888899999999 8999999887754444333 89999999999999999999999999
Q ss_pred EEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCC----eEEEEeCCCcceeecccccCcCEEEEEEeCCCCc
Q 010470 421 FDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADG----SVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKP 496 (510)
Q Consensus 421 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 496 (510)
+|+.++.....-+....-+ ..+.|+|++++||.+--+| .|++||+.+++....-. ..+.=.+-+|.|+|++
T Consensus 428 ididngnv~~idkS~~~lI----tdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ry 502 (668)
T COG4946 428 IDIDNGNVRLIDKSEYGLI----TDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRY 502 (668)
T ss_pred EEecCCCeeEeccccccee----EEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcE
Confidence 9999988755444444333 3489999999999987776 59999999888765433 2222356689999998
Q ss_pred EEEee
Q 010470 497 LASAD 501 (510)
Q Consensus 497 l~s~~ 501 (510)
|..-+
T Consensus 503 LYfLs 507 (668)
T COG4946 503 LYFLS 507 (668)
T ss_pred EEEEe
Confidence 76543
No 286
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=1.8e-09 Score=103.20 Aligned_cols=211 Identities=17% Similarity=0.110 Sum_probs=132.8
Q ss_pred CeEEEEeCCCCcceecccccccceeEEEEecCCCE-EEEEeC---CCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCC
Q 010470 247 KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRS-VIAASS---SNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISS 322 (510)
Q Consensus 247 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~ 322 (510)
..|.+-|.+... ...+... +......|+|||+. ++..+. +..|+++|+.+++...... ..+......|+| ++
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SP-DG 244 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSK-DG 244 (419)
T ss_pred ceEEEECCCCCc-eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECC-CC
Confidence 456665665433 2333333 37788999999985 555443 3579999998887654443 455566788999 55
Q ss_pred C-EEEEEeCC--CcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecC-CC--cEEEEECCCCceeeeeccccccc
Q 010470 323 R-HVVSAAYD--RTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI-DG--NLRLWDIQTGKLLSEVAAHSLAA 396 (510)
Q Consensus 323 ~-~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~ 396 (510)
. ++++.+.+ ..|.++|+.++................|+|||+.|+..+. .| .|+++|+.+++........ ..
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g--~~ 322 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG--KN 322 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC--Cc
Confidence 5 44454434 5688889887765443333332445689999998776543 33 5888898877654333222 11
Q ss_pred EEEEEEcCCCCEEEEEecC---------CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC---CeE
Q 010470 397 VTSISLSRSGNIILTSGRD---------NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD---GSV 464 (510)
Q Consensus 397 i~~i~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~i 464 (510)
...|+|+|+.++..+.. ..|.+.|+.++.... +.... .. ....|+|||+.|+..+.+ ..+
T Consensus 323 --~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~-~~----~~p~~SPDG~~I~f~~~~~~~~~L 394 (419)
T PRK04043 323 --NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTANG-VN----QFPRFSSDGGSIMFIKYLGNQSAL 394 (419)
T ss_pred --CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCCC-Cc----CCeEECCCCCEEEEEEccCCcEEE
Confidence 24899999988877644 368888888776533 22221 11 126899999988766543 236
Q ss_pred EEEeCCC
Q 010470 465 YIWSISK 471 (510)
Q Consensus 465 ~iwd~~~ 471 (510)
.++++..
T Consensus 395 ~~~~l~g 401 (419)
T PRK04043 395 GIIRLNY 401 (419)
T ss_pred EEEecCC
Confidence 6777654
No 287
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=1.8e-12 Score=124.96 Aligned_cols=261 Identities=18% Similarity=0.220 Sum_probs=185.7
Q ss_pred cceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCC--eEEE
Q 010470 216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSN--NLYV 293 (510)
Q Consensus 216 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~i 293 (510)
+...+|+.|+...+|++|+.+.++|+.|+..|.|++|++.+|.......+|.++|+.+.-+.+|..+++.+.-. -..+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 44566888999999999999999999999999999999999999999999999999999999999888776443 4689
Q ss_pred EEcCC-CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-----CceeEEEEcCCCCEEE
Q 010470 294 WDVNS-GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-----SNCNALAFSMDGQTIF 367 (510)
Q Consensus 294 wd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~ 367 (510)
|++.+ +...++|.. -.++.|+. ....-+.|.......+||+.++.+..++... ..-++..|+|+...++
T Consensus 1172 W~~~s~~~~~Hsf~e----d~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred hccccccCccccccc----cceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 99864 455555543 35677876 3334444555567899999999887774332 2347899999988776
Q ss_pred EecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEE
Q 010470 368 SGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSC 447 (510)
Q Consensus 368 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (510)
- || .+||.+....+..|.... .--.-.|+|+|.-++..+. |||+++.+.++....-. -+.+.
T Consensus 1247 n---dG--vLWDvR~~~aIh~FD~ft--~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld------qc~Vt 1308 (1516)
T KOG1832|consen 1247 N---DG--VLWDVRIPEAIHRFDQFT--DYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD------QCAVT 1308 (1516)
T ss_pred e---Cc--eeeeeccHHHHhhhhhhe--ecccccccCCCceEEeech-----hhhhHHHHHHhcCcccc------ceEEE
Confidence 3 44 479999888777776542 2223468999999888764 89999988776654332 23367
Q ss_pred EcCCCCEEEEEcC------C-----------CeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEe
Q 010470 448 ISPDESYVAAGSA------D-----------GSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASA 500 (510)
Q Consensus 448 ~s~~~~~l~~~~~------d-----------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 500 (510)
|+..|+.++..-. | ...+-|+..+.+.+.++.. ..+|..++-+|...+|...
T Consensus 1309 FNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v-~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1309 FNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPV-DRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred eccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeec-ccchhhhhcCCccceEEEE
Confidence 8888877654330 0 1233344444444555543 3356666666766666554
No 288
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.29 E-value=9.5e-10 Score=92.11 Aligned_cols=225 Identities=11% Similarity=-0.021 Sum_probs=148.1
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCe-eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-Ccee
Q 010470 278 DNRSVIAASSSNNLYVWDVNSGRV-RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCN 355 (510)
Q Consensus 278 ~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~ 355 (510)
...+|+.|+..|...+|...+.+. ......|...|+-+.-.-+...-+..++.|.+++++++..+......... -..+
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 445789999999999999987653 33334455544332222223345667788999999988654433322222 2388
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEECCCC-ce-eeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEee
Q 010470 356 ALAFSMDGQTIFSGHIDGNLRLWDIQTG-KL-LSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLR 433 (510)
Q Consensus 356 ~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 433 (510)
++.++++++++++.+....|..|.+... .. +..........-.+..|+.....++++..||++.|||++.........
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence 9999999999999999999999988643 32 232333333566788999999999999999999999999754433322
Q ss_pred -cCCCeeecCceeEEEcCCCC--EEEEEcCCCeEEEEeCCCcceeeccc-------ccC-cCEEEEEEeCCCCcEEEeeC
Q 010470 434 -ATGNRVASNWSRSCISPDES--YVAAGSADGSVYIWSISKADIVRTLK-------EHT-APVLSCSWSGLGKPLASADK 502 (510)
Q Consensus 434 -~~~~~~~~~~~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~-~~v~~~~~~~~~~~l~s~~~ 502 (510)
.........+..+.|++.|. +|+..-.-+.+.+.|++++.....+. .|. ..|.+-.|+.++..+.+.+.
T Consensus 243 sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 243 SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence 22222334455578898664 35555456789999999876543332 233 23777788877765555443
No 289
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.27 E-value=7.2e-09 Score=88.38 Aligned_cols=234 Identities=18% Similarity=0.223 Sum_probs=134.2
Q ss_pred EEEecCCCEEEEeeCCCeEEEEeCCCC--cceecc---cccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee
Q 010470 231 ILFEYNSARLISGGQDKSIKLWDTNTG--SLSSTL---YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL 305 (510)
Q Consensus 231 ~~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 305 (510)
++.+.+|+.||.-- |..|.|-...+. ..+... ......-..++|+||+..|+.+...|+|++||+.. ..+..+
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI 80 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence 56678898887754 667777655432 111211 22233446799999999999999999999999874 333333
Q ss_pred cC-------CCCceEEEEEecCC-----CCEEEEEeCCCcEEEEECCC-----CeEeeeeee----cCceeEEEEcCCCC
Q 010470 306 TG-------HTDKVCAVDVSKIS-----SRHVVSAAYDRTLKVWDLHK-----GYCVNTIIF----HSNCNALAFSMDGQ 364 (510)
Q Consensus 306 ~~-------~~~~v~~i~~~~~~-----~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~----~~~i~~i~~~~~~~ 364 (510)
.. -...|.++.|.+.. ...|++-..+|.++-|-+.. .+....+.. +..|+++.++|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 22 23556777776532 23566777788887776532 233344433 24699999999988
Q ss_pred EEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCE-E-EEEecCCc------EEEEEcCCceeeeEeecCC
Q 010470 365 TIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNI-I-LTSGRDNL------HNLFDIRSLEVCGSLRATG 436 (510)
Q Consensus 365 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l-~~~~~d~~------i~i~d~~~~~~~~~~~~~~ 436 (510)
.|++|+.... .++. .. .. ...+++-.+-.+..+ . ++...|+. ..+|.+-+.......
T Consensus 161 LLlVgG~~~~------~~~~--s~--a~-~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~---- 225 (282)
T PF15492_consen 161 LLLVGGCEQN------QDGM--SK--AS-SCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQ---- 225 (282)
T ss_pred EEEEeccCCC------CCcc--cc--cc-ccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecc----
Confidence 8887764322 0000 00 00 022222222211111 1 11111111 122322222111111
Q ss_pred CeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeeccccc
Q 010470 437 NRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEH 481 (510)
Q Consensus 437 ~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 481 (510)
......+..+.+||||..||+...+|.|.+|++.+-.+...+..+
T Consensus 226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 111223445899999999999999999999999998877776544
No 290
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=1.8e-10 Score=109.89 Aligned_cols=260 Identities=9% Similarity=0.015 Sum_probs=182.7
Q ss_pred eEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCC------------CEEEEEeCCCeEEEEE
Q 010470 228 CASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDN------------RSVIAASSSNNLYVWD 295 (510)
Q Consensus 228 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~d~~i~iwd 295 (510)
-.++.|+|.| +||.|+. ..|.+.|..+.+.+..+..|...|+.+.|.|-. -.|+++...|.|.+||
T Consensus 18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 6778999877 7777774 479999999999999999999999999997732 2466677789999999
Q ss_pred cCCCCeeEeecCCCCceEEEEEecC--CC-CEEEEEeCCCcEEEEECCCCeEeeeeeecCc-eeEEEEcC-CCCEEEEec
Q 010470 296 VNSGRVRHTLTGHTDKVCAVDVSKI--SS-RHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSM-DGQTIFSGH 370 (510)
Q Consensus 296 ~~~~~~~~~~~~~~~~v~~i~~~~~--~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-i~~i~~~~-~~~~l~~~~ 370 (510)
...+..+..+..|.+++..++|.+. +. ..++......++.+|+..+|........... ..|+.+.| |.+.+..-+
T Consensus 96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~ 175 (1062)
T KOG1912|consen 96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLG 175 (1062)
T ss_pred ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEc
Confidence 9999999999999999999999874 22 5677777788999999999999888877665 45699999 667777777
Q ss_pred CCCcEEEEECCCCceeeeecccccccEEEEEEcCC-----CCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCcee
Q 010470 371 IDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRS-----GNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSR 445 (510)
Q Consensus 371 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~-----~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 445 (510)
..|.+.+.+.-..+.. . .+..-+.+..+ ..-..+++.+ ..+.. ............
T Consensus 176 s~g~vl~~~~l~~sep-~------~pgk~~qI~sd~Sdl~~lere~at~n-------s~ts~------~~sa~fity~a~ 235 (1062)
T KOG1912|consen 176 SKGFVLSCKDLGLSEP-D------VPGKEFQITSDHSDLAHLERETATGN-------STTST------PASAYFITYCAQ 235 (1062)
T ss_pred cCceEEEEeccCCCCC-C------CCceeEEEecCccchhhhhhhhhccc-------cccCC------CcchhHHHHHHh
Confidence 7788877765321110 0 11111111111 0011111110 00000 000000111223
Q ss_pred EEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCC--cEEEeeCCCeEEEc
Q 010470 446 SCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGK--PLASADKNGVVCVW 509 (510)
Q Consensus 446 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg~i~iw 509 (510)
++|+|.-+-++.......+.|+|+.-..++....-..+.+.-+.|-|+++ .|++.-.||.+.+|
T Consensus 236 faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 236 FAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred hhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEE
Confidence 67888766666666677799999998888888877777788888888876 68889999999988
No 291
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.26 E-value=6.8e-09 Score=93.94 Aligned_cols=147 Identities=19% Similarity=0.308 Sum_probs=122.9
Q ss_pred cccccceEEEEEecCCCEEEEeeCCC-eEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC
Q 010470 222 NAHEGGCASILFEYNSARLISGGQDK-SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR 300 (510)
Q Consensus 222 ~~h~~~v~~~~~s~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 300 (510)
-+|.+.|.-..+..+++-++.|..|| .+-|||..+++. ..+...-+.|.++..+|+|++++++.....+.++|+.++.
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 36888899999999999999999999 899999997765 4456677899999999999999999999999999999998
Q ss_pred eeEeecCCCCceEEEEEecCCCCEEEEEeCCC----cEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEec
Q 010470 301 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR----TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGH 370 (510)
Q Consensus 301 ~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 370 (510)
....-+...+-|+.+.|+| ++..++-+--+| .|+++|+.+++..........-.+-+|.|++++|..-+
T Consensus 435 v~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 435 VRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred eeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 7766666778899999999 888888776554 68999999888766655555556778999999887544
No 292
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.26 E-value=2.7e-09 Score=102.48 Aligned_cols=260 Identities=12% Similarity=0.082 Sum_probs=164.5
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCcceeccccccc----------ce-eEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEe
Q 010470 236 NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLG----------SV-LDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT 304 (510)
Q Consensus 236 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------~v-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 304 (510)
.+..+++++.+|.+.-+|..+|+.+........ .+ ..+.. ++..++.++.+|.++.+|..+|+.+..
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 356888888899999999999988765432210 00 01112 356688888999999999999998887
Q ss_pred ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEE--EEcC--CCCEEEEecCCCcEEEEEC
Q 010470 305 LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNAL--AFSM--DGQTIFSGHIDGNLRLWDI 380 (510)
Q Consensus 305 ~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i--~~~~--~~~~l~~~~~dg~i~i~d~ 380 (510)
.........+..+ .+..++.++.+|.+..+|..+|+.+..+....+...+ ..+| .+..++.++.+|.+..+|.
T Consensus 146 ~~~~~~~~ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 146 TKVAGEALSRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ccCCCceecCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEc
Confidence 7643322211222 2456777778999999999999988887654221000 0112 2345777888999999999
Q ss_pred CCCceeeeecccccc------cEEEEEEcC--CCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCC
Q 010470 381 QTGKLLSEVAAHSLA------AVTSISLSR--SGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE 452 (510)
Q Consensus 381 ~~~~~~~~~~~~~~~------~i~~i~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 452 (510)
.+|+........... ....+..+| .+..+++++.+|.+..+|..+++.......... . .+ ...+
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~--~----~~--~~~~ 294 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSV--N----DF--AVDG 294 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCc--c----Cc--EEEC
Confidence 999877665422100 011111222 356777788899999999999887655432211 0 01 2256
Q ss_pred CEEEEEcCCCeEEEEeCCCcceeecccccC-cCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 453 SYVAAGSADGSVYIWSISKADIVRTLKEHT-APVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 453 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
..|+.++.+|.++.+|..+|+.+....... ....+... .+..|+.++.||.|...|
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWIN 351 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEE
Confidence 778888889999999999998765443211 11122222 244677777888877653
No 293
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.25 E-value=2.6e-10 Score=98.74 Aligned_cols=243 Identities=17% Similarity=0.278 Sum_probs=175.9
Q ss_pred ceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcC-CCCeeEee-cCCCCceEEEEEecCCCCEEEEEeCCCcEEE
Q 010470 259 LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVN-SGRVRHTL-TGHTDKVCAVDVSKISSRHVVSAAYDRTLKV 336 (510)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~i 336 (510)
.+..+.||...+++...-|...-+++.+.|.+++||--. .++.-..+ .....+++++.+.+ ....|++|-..|++.-
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~-e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS-ESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec-cceEEEEEEecceEEE
Confidence 356678899999998888888889999999999999543 34433222 23457788899888 7888999999999998
Q ss_pred EECCC----CeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEE
Q 010470 337 WDLHK----GYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILT 411 (510)
Q Consensus 337 wd~~~----~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 411 (510)
+.+.. ...++....+ ..+..+.|+....++++.+.|..+.-.-.+.+..+..+... ...+++.+.-. +.+.
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~--~~~t~~~~d~~--~~fv 170 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE--TPASALQFDAL--YAFV 170 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee--ccCCCCceeeE--EEEe
Confidence 86643 2333333333 45888888888889999998877765555555544333221 11112222211 5566
Q ss_pred EecCCcEEEEEc--CCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcce-eecccccCcCEEEE
Q 010470 412 SGRDNLHNLFDI--RSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADI-VRTLKEHTAPVLSC 488 (510)
Q Consensus 412 ~~~d~~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~ 488 (510)
|...|.|....+ .....+..+.++...+.+ ++|.|....+++|..|..|.+||+..++- ...+.+|...|..+
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~----l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTC----LKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQAL 246 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcccceEE----EEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhh
Confidence 666676665544 345566677777666655 89999999999999999999999976543 45677899999999
Q ss_pred EEeCCCCcEEEeeCCCeEEEcC
Q 010470 489 SWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 489 ~~~~~~~~l~s~~~dg~i~iwd 510 (510)
..-+.-+.|++++.||.|.+|+
T Consensus 247 ~~~~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 247 SYAQHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred hhhhhheeeeeccCCCeEEEEe
Confidence 9888889999999999999996
No 294
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.23 E-value=7.1e-09 Score=92.55 Aligned_cols=216 Identities=19% Similarity=0.175 Sum_probs=142.6
Q ss_pred CCeEEEEEcCCCCeeEeecCC--CCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCE
Q 010470 288 SNNLYVWDVNSGRVRHTLTGH--TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQT 365 (510)
Q Consensus 288 d~~i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~ 365 (510)
+|.|..||..+|+.+.....- .....+..+ + .+..+++++.++.|..||..+|+.+..+.....+...- ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P-DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E-ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-E-eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccc
Confidence 688999999999988887531 122221122 2 46677777889999999999999998888765533222 224566
Q ss_pred EEEecCCCcEEEEECCCCceeeee-cccc--cccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeec-
Q 010470 366 IFSGHIDGNLRLWDIQTGKLLSEV-AAHS--LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVAS- 441 (510)
Q Consensus 366 l~~~~~dg~i~i~d~~~~~~~~~~-~~~~--~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~- 441 (510)
+++++.++.|+.+|..+|+.+... .... ............+..++++..++.+..+|+++++.+............
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 677777889999999999998884 3221 011222333334888899988999999999999998888764433211
Q ss_pred -----CceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 442 -----NWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 442 -----~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
.+..-.+..++ .++.++.+|.+.-+|+.+++.+.... ...+.. ...+++..|+.++.+|.|..||
T Consensus 159 ~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 159 ISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEE
T ss_pred eeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEE
Confidence 11222233345 77777777764444999998664333 222332 1456777888888899999886
No 295
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=1.5e-08 Score=97.01 Aligned_cols=200 Identities=14% Similarity=0.102 Sum_probs=127.3
Q ss_pred CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCC-EEEEEeC---CCcEEEEECCCCeEeeeeeecCceeEEEEcCCCC
Q 010470 289 NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR-HVVSAAY---DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQ 364 (510)
Q Consensus 289 ~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~-~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~ 364 (510)
..|.+-|..... .+.+.... ......|+| +++ .++..+. +..|.++|+.+++...............|+|||+
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCC
Confidence 356665654333 33343333 778899999 555 3554333 3579999998887666555555566788999998
Q ss_pred EEEEe-cC--CCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC-C--cEEEEEcCCceeeeEeecCCCe
Q 010470 365 TIFSG-HI--DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD-N--LHNLFDIRSLEVCGSLRATGNR 438 (510)
Q Consensus 365 ~l~~~-~~--dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~~ 438 (510)
.++.. +. +..|+++|+.++.. ..+.... .......|+|||+.|+..+.. + .|+++|+.+++....... ...
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~-~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~ 322 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTL-TQITNYP-GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN 322 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcE-EEcccCC-CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc
Confidence 77643 32 35688889877764 3343332 234456899999977766533 3 688888887766333221 111
Q ss_pred eecCceeEEEcCCCCEEEEEcCC---------CeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeC
Q 010470 439 VASNWSRSCISPDESYVAAGSAD---------GSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADK 502 (510)
Q Consensus 439 ~~~~~~~~~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 502 (510)
. ..|+|||++|+..+.. ..|++.|+.++... .+... .......|+|||+.|+....
T Consensus 323 --~----~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 323 --N----SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred --C----ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEc
Confidence 1 4799999998876543 36888898877643 33322 22335899999997766544
No 296
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=9e-10 Score=98.81 Aligned_cols=252 Identities=17% Similarity=0.222 Sum_probs=176.9
Q ss_pred cccceEEEEEecCCCEEEEeeCCCeEEEEeCCC---CcceecccccccceeEEEEecCCCEEEEEeC-CCeEEEEEcCCC
Q 010470 224 HEGGCASILFEYNSARLISGGQDKSIKLWDTNT---GSLSSTLYGCLGSVLDLAITHDNRSVIAASS-SNNLYVWDVNSG 299 (510)
Q Consensus 224 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~ 299 (510)
|...|+.+..+. .+++++++.||.++.|.... -..+..+..|.+.|.+++.+-++..+.+.+. |..++++|+.+-
T Consensus 8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 777787776553 56999999999999997543 2345667788999999999999999999787 999999999875
Q ss_pred CeeEeec--CCCCceEEEEEecCCC--CEEEEEeCCCcEEEEECCCCeEeeee---eecCceeEEEEcCCCCEEEEecCC
Q 010470 300 RVRHTLT--GHTDKVCAVDVSKISS--RHVVSAAYDRTLKVWDLHKGYCVNTI---IFHSNCNALAFSMDGQTIFSGHID 372 (510)
Q Consensus 300 ~~~~~~~--~~~~~v~~i~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~d 372 (510)
..+.-++ ...+.+..+ .++.+. .+-++.-.+|.+.++|-..+.+...+ .+.++|.++.+++.+..+++....
T Consensus 87 DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred chhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 5443222 122222222 223111 22333445789999998755432222 233679999999999999999999
Q ss_pred CcEEEEECCC------Cceeeeecc--------cccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCC-
Q 010470 373 GNLRLWDIQT------GKLLSEVAA--------HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGN- 437 (510)
Q Consensus 373 g~i~i~d~~~------~~~~~~~~~--------~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~- 437 (510)
|.|.-|.... .+....++. .....+.++.|+|+|..+.+-+.|..|++++.++++.++.+.....
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~ 245 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTD 245 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchh
Confidence 9999998762 111111111 1125788999999999999999999999999998877655421100
Q ss_pred ----------------------------eeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecc
Q 010470 438 ----------------------------RVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTL 478 (510)
Q Consensus 438 ----------------------------~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 478 (510)
........++|...|++|+.|+.=| |+|.++.++.+.+.+
T Consensus 246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 0011233477999999999999887 999999988776554
No 297
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.20 E-value=7.8e-09 Score=86.75 Aligned_cols=241 Identities=12% Similarity=0.045 Sum_probs=157.6
Q ss_pred EEEEEec-----CCCEEEEeeCCCeEEEEeCCCCcc-eecccccccceeEEEE-ecCCCEEEEEeCCCeEEEEEcCCCCe
Q 010470 229 ASILFEY-----NSARLISGGQDKSIKLWDTNTGSL-SSTLYGCLGSVLDLAI-THDNRSVIAASSSNNLYVWDVNSGRV 301 (510)
Q Consensus 229 ~~~~~s~-----~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~ 301 (510)
..+.|.| ...+||.||..|...+|...+... ......|...|+-+.= .....-+..++.|.++++.++..+..
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence 3455555 235899999999999999986554 2223333333322111 11223467788888999988875544
Q ss_pred eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC--eEeeeeeec--CceeEEEEcCCCCEEEEecCCCcEEE
Q 010470 302 RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG--YCVNTIIFH--SNCNALAFSMDGQTIFSGHIDGNLRL 377 (510)
Q Consensus 302 ~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~dg~i~i 377 (510)
........-.+.++.+++ ++.+.++.+....|..|.+... ........+ ..--+..|+.....++++..||++.|
T Consensus 151 ~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I 229 (344)
T KOG4532|consen 151 KFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAI 229 (344)
T ss_pred cceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEE
Confidence 333322223378899998 8999999999999999988643 223322222 23567888888899999999999999
Q ss_pred EECCCCceee----eecccccccEEEEEEcCCCC--EEEEEecCCcEEEEEcCCceeeeEeecCCCeee----cCceeEE
Q 010470 378 WDIQTGKLLS----EVAAHSLAAVTSISLSRSGN--IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVA----SNWSRSC 447 (510)
Q Consensus 378 ~d~~~~~~~~----~~~~~~~~~i~~i~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~----~~~~~~~ 447 (510)
||++....+. ....++.+.+..+.|++.|. +|+.+-.-+.+.+.|++++.....+........ ..+...+
T Consensus 230 ~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~ 309 (344)
T KOG4532|consen 230 YDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTN 309 (344)
T ss_pred EEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccccccccc
Confidence 9999764433 23445669999999998665 566666668899999999877766654443311 1233355
Q ss_pred EcCCCCEEEEEcCCCeEEEEeCCC
Q 010470 448 ISPDESYVAAGSADGSVYIWSISK 471 (510)
Q Consensus 448 ~s~~~~~l~~~~~dg~i~iwd~~~ 471 (510)
|+.++.-+.+.+.+. +.=|++.+
T Consensus 310 f~~~n~s~~v~~e~~-~ae~ni~s 332 (344)
T KOG4532|consen 310 FNNENESNDVKNELQ-GAEYNILS 332 (344)
T ss_pred ccCCCcccccccchh-hheeeccc
Confidence 666666655555443 45555544
No 298
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.20 E-value=1.8e-11 Score=118.25 Aligned_cols=220 Identities=16% Similarity=0.233 Sum_probs=162.6
Q ss_pred ceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEE-EeCCC-cEEE
Q 010470 259 LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVS-AAYDR-TLKV 336 (510)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s-~~~dg-~i~i 336 (510)
...++..|....+|++|+.+.+.|++|+..|.|++|++.+|.......+|..+|+.+.-+. ++...++ ++... -..+
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHHH
Confidence 3456777888999999999999999999999999999999999999999999999998887 5555444 44333 5789
Q ss_pred EECCC-CeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccc---cccEEEEEEcCCCCEEEEE
Q 010470 337 WDLHK-GYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS---LAAVTSISLSRSGNIILTS 412 (510)
Q Consensus 337 wd~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~i~~i~~~~~~~~l~~~ 412 (510)
|++.+ +...+++ ....++.|+.....-+.|+......+||+.++.++.++.... ...-++..|+|+..+++-
T Consensus 1172 W~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln- 1247 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN- 1247 (1516)
T ss_pred hccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee-
Confidence 99864 2223333 235678888765555667766789999999998877643321 123477899999888773
Q ss_pred ecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeC
Q 010470 413 GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 492 (510)
Q Consensus 413 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 492 (510)
||. +||.+..+.++.|........ -.|+|+|.-++..+. |||+.+.+.+...+.-. -..+.|+.
T Consensus 1248 --dGv--LWDvR~~~aIh~FD~ft~~~~-----G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld--qc~VtFNs 1311 (1516)
T KOG1832|consen 1248 --DGV--LWDVRIPEAIHRFDQFTDYGG-----GGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD--QCAVTFNS 1311 (1516)
T ss_pred --Cce--eeeeccHHHHhhhhhheeccc-----ccccCCCceEEeech-----hhhhHHHHHHhcCcccc--ceEEEecc
Confidence 443 799998887777765543333 258999999988764 89999998887765422 35677887
Q ss_pred CCCcEEE
Q 010470 493 LGKPLAS 499 (510)
Q Consensus 493 ~~~~l~s 499 (510)
.|..++.
T Consensus 1312 tG~VmYa 1318 (1516)
T KOG1832|consen 1312 TGDVMYA 1318 (1516)
T ss_pred Cccchhh
Confidence 7775543
No 299
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=8.7e-09 Score=95.06 Aligned_cols=222 Identities=14% Similarity=0.221 Sum_probs=153.0
Q ss_pred ceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeC-----------CCcEEEE
Q 010470 269 SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY-----------DRTLKVW 337 (510)
Q Consensus 269 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~-----------dg~i~iw 337 (510)
.-+-+.|||.|.||++-..-| |.+|--.+-..++.+. | ..|.-+.|+| ..++|++-+. ...+.||
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCC-ccceEEEecCCccccCcccCCCceEEEE
Confidence 346789999999999988766 8899755545555554 4 3578899999 8889998654 2579999
Q ss_pred ECCCCeEeeeeeecCc----eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEe
Q 010470 338 DLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG 413 (510)
Q Consensus 338 d~~~~~~~~~~~~~~~----i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 413 (510)
|+.+|...+.+..... -.-+.||.|+++++.-..+ .|.||+..+..++..-... ...|....|+|.+++|+--.
T Consensus 288 DI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslk-i~gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLK-ISGIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred EccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccC-CccccCcccCCCcceEEEEc
Confidence 9999999888876321 3467899999999976654 7999998765444332222 27899999999988887543
Q ss_pred cC-----CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC-------CC---eEEEEeCCCcce-eec
Q 010470 414 RD-----NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA-------DG---SVYIWSISKADI-VRT 477 (510)
Q Consensus 414 ~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-------dg---~i~iwd~~~~~~-~~~ 477 (510)
.. ..+.+..+.+++.+.+...+.-.- +.+.|-.+|.||+.--. .| .+-|+.+..... +..
T Consensus 366 pe~~~~parvtL~evPs~~~iRt~nlfnVsD----ckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ 441 (698)
T KOG2314|consen 366 PETNNIPARVTLMEVPSKREIRTKNLFNVSD----CKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV 441 (698)
T ss_pred ccccCCcceEEEEecCccceeeeccceeeec----cEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee
Confidence 21 356677777666665544333222 23778889999886321 11 355666654432 222
Q ss_pred ccccCcCEEEEEEeCCCCcEEEee
Q 010470 478 LKEHTAPVLSCSWSGLGKPLASAD 501 (510)
Q Consensus 478 ~~~~~~~v~~~~~~~~~~~l~s~~ 501 (510)
+. -..+|...+|-|.|..+++-+
T Consensus 442 ve-lke~vi~FaWEP~gdkF~vi~ 464 (698)
T KOG2314|consen 442 VE-LKESVIAFAWEPHGDKFAVIS 464 (698)
T ss_pred ee-cchheeeeeeccCCCeEEEEE
Confidence 22 456789999999999776644
No 300
>PRK02888 nitrous-oxide reductase; Validated
Probab=99.18 E-value=2.5e-08 Score=96.10 Aligned_cols=254 Identities=14% Similarity=0.151 Sum_probs=158.2
Q ss_pred EEEeeCCCeEEEEeCCCCcceecccccc-------------ccee-------EEEE-------------ecCCCEEEEEe
Q 010470 240 LISGGQDKSIKLWDTNTGSLSSTLYGCL-------------GSVL-------DLAI-------------THDNRSVIAAS 286 (510)
Q Consensus 240 l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------------~~v~-------~~~~-------------~~~~~~l~~~~ 286 (510)
|.||+..|.|+|+-+.+++.+..+.-.. ..|. .+.| .-||++++.-.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find 148 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND 148 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence 6788899999999998887655432110 0010 0111 12677777776
Q ss_pred C-CCeEEEEEcCCCCeeEeecC-CCCceEEEEE-------------------ecCCCCEE-EEEeCCCcEEEEECCCCeE
Q 010470 287 S-SNNLYVWDVNSGRVRHTLTG-HTDKVCAVDV-------------------SKISSRHV-VSAAYDRTLKVWDLHKGYC 344 (510)
Q Consensus 287 ~-d~~i~iwd~~~~~~~~~~~~-~~~~v~~i~~-------------------~~~~~~~l-~s~~~dg~i~iwd~~~~~~ 344 (510)
. +..|...++...++-..+.- ....+.++.+ .| ++..+ .+.-..+.+.+.|..+.+.
T Consensus 149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~Plpn-DGk~l~~~~ey~~~vSvID~etmeV 227 (635)
T PRK02888 149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPN-DGKDLDDPKKYRSLFTAVDAETMEV 227 (635)
T ss_pred CCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCC-CCCEeecccceeEEEEEEECccceE
Confidence 3 55666666655443322211 1111222222 22 33332 2233356788889888888
Q ss_pred eeeeeecCceeEEEEcCCCCEEEEec----------------------------------------CCCcEEEEECCC--
Q 010470 345 VNTIIFHSNCNALAFSMDGQTIFSGH----------------------------------------IDGNLRLWDIQT-- 382 (510)
Q Consensus 345 ~~~~~~~~~i~~i~~~~~~~~l~~~~----------------------------------------~dg~i~i~d~~~-- 382 (510)
..++........+.++|+|.++++.+ .++.|.++|.++
T Consensus 228 ~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~ 307 (635)
T PRK02888 228 AWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAA 307 (635)
T ss_pred EEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCccc
Confidence 88888888888889999999888775 124477778776
Q ss_pred ---CceeeeecccccccEEEEEEcCCCCEEEEEe-cCCcEEEEEcCCcee------------eeEeecCCCeeecCceeE
Q 010470 383 ---GKLLSEVAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDIRSLEV------------CGSLRATGNRVASNWSRS 446 (510)
Q Consensus 383 ---~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~~~------------~~~~~~~~~~~~~~~~~~ 446 (510)
...+..+... ..+..+.++|||+++++++ .++++.|+|+.+.+. .........+ ...
T Consensus 308 ~~~~~v~~yIPVG--KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-----LHT 380 (635)
T PRK02888 308 NAGSALTRYVPVP--KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-----LHT 380 (635)
T ss_pred cCCcceEEEEECC--CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc-----ceE
Confidence 3444444444 5788899999999887766 478999999987553 2333222222 236
Q ss_pred EEcCCCCEEEEEcCCCeEEEEeCCC----------cceeecccccCcCE-----EEEEEeCCCCcEEEee
Q 010470 447 CISPDESYVAAGSADGSVYIWSISK----------ADIVRTLKEHTAPV-----LSCSWSGLGKPLASAD 501 (510)
Q Consensus 447 ~~s~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v-----~~~~~~~~~~~l~s~~ 501 (510)
+|+++|+...+-.-|..|..||+.. ...+..+.-|-.+- .+=.-.|+|++|++..
T Consensus 381 aFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 381 AFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred EECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 8999999888888899999999876 23444444343322 1223368888888764
No 301
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.16 E-value=1.3e-09 Score=93.20 Aligned_cols=242 Identities=17% Similarity=0.303 Sum_probs=159.7
Q ss_pred cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC-----eeEeecCCC------------CceEEEEEecC-CCCEEEE
Q 010470 266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR-----VRHTLTGHT------------DKVCAVDVSKI-SSRHVVS 327 (510)
Q Consensus 266 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~------------~~v~~i~~~~~-~~~~l~s 327 (510)
....|+++.|...|.|+++|...|.|.+|.-.... ....+++|. ..|..+.|... +...++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35678999999999999999999999999755432 122344443 35777888753 3456777
Q ss_pred EeCCCcEEEEECCCCe-------------------------------------Eeee-----e--eecCceeEEEEcCCC
Q 010470 328 AAYDRTLKVWDLHKGY-------------------------------------CVNT-----I--IFHSNCNALAFSMDG 363 (510)
Q Consensus 328 ~~~dg~i~iwd~~~~~-------------------------------------~~~~-----~--~~~~~i~~i~~~~~~ 363 (510)
.+.|.+|++|.+.... .+.. . .++..++++.++.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7789999999874320 0000 0 011237888998888
Q ss_pred CEEEEecCCCcEEEEECCCCcee---eeecccc----cccEEEEEEcCC-CCEEEEEecCCcEEEEEcCCceeee----E
Q 010470 364 QTIFSGHIDGNLRLWDIQTGKLL---SEVAAHS----LAAVTSISLSRS-GNIILTSGRDNLHNLFDIRSLEVCG----S 431 (510)
Q Consensus 364 ~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~----~~~i~~i~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~----~ 431 (510)
..++++. |=.|.+|++.-.... ..+..+. ...|++..|+|. .+.+.-++..|.|++-|++...... .
T Consensus 185 et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 8777664 568999988643322 2223332 135888999995 4566667788999999998432211 1
Q ss_pred eecC--------CCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC-cceeecccccC------------cCE---EE
Q 010470 432 LRAT--------GNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK-ADIVRTLKEHT------------APV---LS 487 (510)
Q Consensus 432 ~~~~--------~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~------------~~v---~~ 487 (510)
+... ...+.+.++.+.|+++|+||++-+. -+|+|||+.. ..++.+++.|. ..| ..
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 1111 1122345677899999999998775 4699999876 45666664432 233 45
Q ss_pred EEEeCCCCcEEEeeCCCeEEEc
Q 010470 488 CSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 488 ~~~~~~~~~l~s~~~dg~i~iw 509 (510)
+.||.|.+.+.+|+..+..-+|
T Consensus 343 isfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 343 ISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred EEecCCcccccccccccceeee
Confidence 7899998899998887665554
No 302
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.14 E-value=1.2e-07 Score=98.94 Aligned_cols=284 Identities=14% Similarity=0.184 Sum_probs=176.0
Q ss_pred eccccccceEEEEEecCCCEEEEeeC---C---CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeC---CCe
Q 010470 220 KINAHEGGCASILFEYNSARLISGGQ---D---KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS---SNN 290 (510)
Q Consensus 220 ~~~~h~~~v~~~~~s~~~~~l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~ 290 (510)
.+. +...-..++|-.||.++|+.+- . ..++||+-+ |....+...-.+--.+++|.|.|++|++... ...
T Consensus 205 ~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~ 282 (928)
T PF04762_consen 205 KLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHD 282 (928)
T ss_pred ccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcE
Confidence 344 6667788999999999998875 2 579999987 6655544444444567899999998888764 346
Q ss_pred EEEEEcCCCCeeEee----cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE--eeeeeec--CceeEEEEcCC
Q 010470 291 LYVWDVNSGRVRHTL----TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC--VNTIIFH--SNCNALAFSMD 362 (510)
Q Consensus 291 i~iwd~~~~~~~~~~----~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~--~~i~~i~~~~~ 362 (510)
|.+|. ++|-....| ......|..+.|++ ++..|+....|. |.+|-..+... .+.+... ..+..+.|+|.
T Consensus 283 VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~-ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe 359 (928)
T PF04762_consen 283 VVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNS-DSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPE 359 (928)
T ss_pred EEEEe-cCCcEeeeEecCCCCCCceeeEEEECC-CCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCC
Confidence 77776 334332233 23456899999999 888888877555 99999876542 3333333 33566999984
Q ss_pred -CCEEEEecCCCcEEEEECC----CCc--------eeeee----------------------cccccccEEEEEEcCCCC
Q 010470 363 -GQTIFSGHIDGNLRLWDIQ----TGK--------LLSEV----------------------AAHSLAAVTSISLSRSGN 407 (510)
Q Consensus 363 -~~~l~~~~~dg~i~i~d~~----~~~--------~~~~~----------------------~~~~~~~i~~i~~~~~~~ 407 (510)
...|.+.+.+|.+..+++. .+. .+..+ ...-..+|.+++|++++.
T Consensus 360 ~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~ 439 (928)
T PF04762_consen 360 KPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNS 439 (928)
T ss_pred CCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCC
Confidence 4456666666666555431 110 01100 001126799999999998
Q ss_pred EEEEEecCCcEEEEEcCCceee--------eEeec------CCCeeecCceeEEEcCCCCEEEEEcCC---CeEEEEeCC
Q 010470 408 IILTSGRDNLHNLFDIRSLEVC--------GSLRA------TGNRVASNWSRSCISPDESYVAAGSAD---GSVYIWSIS 470 (510)
Q Consensus 408 ~l~~~~~d~~i~i~d~~~~~~~--------~~~~~------~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~i~iwd~~ 470 (510)
.+++-..||.+.+|........ ..+.. ........+..++|..+..+++....+ +.+.++++.
T Consensus 440 ~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 519 (928)
T PF04762_consen 440 RFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDID 519 (928)
T ss_pred eEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEec
Confidence 8999999999999985432211 11111 011112234456777767666655543 678888874
Q ss_pred Ccc---eeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEE
Q 010470 471 KAD---IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCV 508 (510)
Q Consensus 471 ~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i 508 (510)
... .+.....-.+.+..+...++...++.-..+|.+..
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~ 560 (928)
T PF04762_consen 520 DSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQ 560 (928)
T ss_pred cCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEE
Confidence 432 22222223445555666665544555566777653
No 303
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.13 E-value=1.3e-09 Score=106.25 Aligned_cols=184 Identities=20% Similarity=0.287 Sum_probs=144.7
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEE
Q 010470 236 NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAV 315 (510)
Q Consensus 236 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i 315 (510)
++..++.|+-...+..+|+.+.+..+...-..+.|+-++. +++++++|...|+|.+-|.++.+.++++..|.+.|.++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 3556777777778889999988877766555545655554 68899999999999999999999999999999999998
Q ss_pred EEecCCCCEEEEEeC---------CCcEEEEECCCCeEeeeeeecCceeEEEEcCC-CCEEEEecCCCcEEEEEC---CC
Q 010470 316 DVSKISSRHVVSAAY---------DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMD-GQTIFSGHIDGNLRLWDI---QT 382 (510)
Q Consensus 316 ~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~---~~ 382 (510)
.+ .++.|+++|. |..|+|||++.-+.+.-+..+....-+.|+|. ...+++++..|...+.|. .+
T Consensus 224 Dv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 DV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred ec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCC
Confidence 77 5788888876 56789999998888877777777777888884 456777888899999993 33
Q ss_pred CceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC
Q 010470 383 GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR 424 (510)
Q Consensus 383 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 424 (510)
...-........+.+..++++++|+.++.|..+|.|.+|.-+
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 321112222222559999999999999999999999999743
No 304
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.13 E-value=2.6e-07 Score=84.15 Aligned_cols=273 Identities=18% Similarity=0.150 Sum_probs=138.7
Q ss_pred EEEecCCCEEEEeeC-CC--eEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecC
Q 010470 231 ILFEYNSARLISGGQ-DK--SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTG 307 (510)
Q Consensus 231 ~~~s~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 307 (510)
=+|.+||+.|+.++. || .+.+.|+.+++..+.-.+.........++|+++.++-...+..|.-.|+.+.+....+..
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 367889977665554 54 567778888877655444333344677889999888777777899999999887666666
Q ss_pred CCCceEEEEEecC-CCCEEEEEeC----------------------CCcEEEEECCCCeEeeeeeecCceeEEEEcCCCC
Q 010470 308 HTDKVCAVDVSKI-SSRHVVSAAY----------------------DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQ 364 (510)
Q Consensus 308 ~~~~v~~i~~~~~-~~~~l~s~~~----------------------dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~ 364 (510)
....+-...|... +...++..-. ...|.-.|+.+|+....+....-+..+.|+|...
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp 200 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDP 200 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEE
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCC
Confidence 6666655566432 3444332211 2346667888888766666666688999999655
Q ss_pred EEEE-ecC---CC-cEEEEECC-CCceeeeecccc-cccEEEEEEcCCCCEEEEEec-----CCcEEEEEcCCceeeeEe
Q 010470 365 TIFS-GHI---DG-NLRLWDIQ-TGKLLSEVAAHS-LAAVTSISLSRSGNIILTSGR-----DNLHNLFDIRSLEVCGSL 432 (510)
Q Consensus 365 ~l~~-~~~---dg-~i~i~d~~-~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~-----d~~i~i~d~~~~~~~~~~ 432 (510)
.+++ |.. +. .-+||-++ .+.....+..+. ...+.-=-|.|+|..|.--+. +..|.-+|+.+++.....
T Consensus 201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~ 280 (386)
T PF14583_consen 201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM 280 (386)
T ss_dssp EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE
T ss_pred CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE
Confidence 4444 432 11 12445443 233333333322 234555678999987655332 335667788877654332
Q ss_pred ecCCCeeecCceeEEEcCCCCEEEEEcCCC----------------eEEEEeCCCcceeec---------ccccCc-CEE
Q 010470 433 RATGNRVASNWSRSCISPDESYVAAGSADG----------------SVYIWSISKADIVRT---------LKEHTA-PVL 486 (510)
Q Consensus 433 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg----------------~i~iwd~~~~~~~~~---------~~~~~~-~v~ 486 (510)
..+. ......++||++++.-+.|. .|+++++..+..... +.++.. .=.
T Consensus 281 ~~p~------~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hP 354 (386)
T PF14583_consen 281 EMPW------CSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHP 354 (386)
T ss_dssp EE-S------EEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT--
T ss_pred eCCc------eeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCC
Confidence 2221 12355689999988655442 466778776554211 121111 124
Q ss_pred EEEEeCCCCcEE-EeeCCCeEEEc
Q 010470 487 SCSWSGLGKPLA-SADKNGVVCVW 509 (510)
Q Consensus 487 ~~~~~~~~~~l~-s~~~dg~i~iw 509 (510)
...|+|||++++ +++..|...||
T Consensus 355 hp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 355 HPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp --EE-TTSSEEEEEE-TTSS-EEE
T ss_pred CCccCCCCCEEEEECCCCCCccEE
Confidence 679999999655 56677776665
No 305
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=2.5e-09 Score=96.05 Aligned_cols=274 Identities=17% Similarity=0.143 Sum_probs=185.2
Q ss_pred chHHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeC-CCeEEEEeCCCCcceecc
Q 010470 185 GLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQ-DKSIKLWDTNTGSLSSTL 263 (510)
Q Consensus 185 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~ 263 (510)
...-+.+++.||.++.|..... .-...+..+..|.+.|.+++.+.+|..+.|++. |..++++|+.+-..+.-+
T Consensus 19 ka~fiiqASlDGh~KFWkKs~i------sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dminmi 92 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRI------SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMI 92 (558)
T ss_pred hhheEEeeecchhhhhcCCCCc------cceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhc
Confidence 3445667889999999985431 112355667899999999999999999999888 999999999876554332
Q ss_pred cccccceeEEEE-ecCC--C-EEEEE-eCCCeEEEEEcCCCC--eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEE
Q 010470 264 YGCLGSVLDLAI-THDN--R-SVIAA-SSSNNLYVWDVNSGR--VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV 336 (510)
Q Consensus 264 ~~~~~~v~~~~~-~~~~--~-~l~~~-~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~i 336 (510)
....-+ -.+.| ...| . .++++ -.++.+.++|-...- ....-.-|..+|.++.+++ .+..+++....|.|.-
T Consensus 93 KL~~lP-g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~~gmVEy 170 (558)
T KOG0882|consen 93 KLVDLP-GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDISGMVEY 170 (558)
T ss_pred ccccCC-CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec-cccceeeccccceeEe
Confidence 211111 11222 2222 1 23333 367899999965433 2333356999999999999 7888999999999999
Q ss_pred EECCC------CeEeeee----------eecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecc---------
Q 010470 337 WDLHK------GYCVNTI----------IFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAA--------- 391 (510)
Q Consensus 337 wd~~~------~~~~~~~----------~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------- 391 (510)
|.... +.....+ .....+.++.|+|+|..+.+-..|..|+++++++|+.++.+..
T Consensus 171 Ws~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ 250 (558)
T KOG0882|consen 171 WSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQP 250 (558)
T ss_pred ecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcc
Confidence 98863 1111111 1224478999999999999999999999999999876554421
Q ss_pred -----------------------cccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCe----------
Q 010470 392 -----------------------HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNR---------- 438 (510)
Q Consensus 392 -----------------------~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---------- 438 (510)
+....-+.+.|+..|++|+-++.=| |+++++.++.+...+......
T Consensus 251 ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~ 329 (558)
T KOG0882|consen 251 KSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFTRLSLYQG 329 (558)
T ss_pred ccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccchhhhhhhHHHHhh
Confidence 1112345678889999998887654 788888888777665321100
Q ss_pred -----------eecCceeEEEcCCCCEEEEEcCCCeEEEE
Q 010470 439 -----------VASNWSRSCISPDESYVAAGSADGSVYIW 467 (510)
Q Consensus 439 -----------~~~~~~~~~~s~~~~~l~~~~~dg~i~iw 467 (510)
..+.-..+.+.+|...++++-...++++|
T Consensus 330 ~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 330 AQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred hhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 00000113356677778888778888888
No 306
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.11 E-value=1.6e-09 Score=96.10 Aligned_cols=161 Identities=19% Similarity=0.192 Sum_probs=115.3
Q ss_pred eeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe----eEeecCCCCceEEEEEecCCCCEEEE---EeCCCcEEEEECCCC
Q 010470 270 VLDLAITHDNRSVIAASSSNNLYVWDVNSGRV----RHTLTGHTDKVCAVDVSKISSRHVVS---AAYDRTLKVWDLHKG 342 (510)
Q Consensus 270 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~v~~i~~~~~~~~~l~s---~~~dg~i~iwd~~~~ 342 (510)
+..+..++.+++++++..+....++++..... ...+. -...-+++.+.. ....+.. .+....+.+|....+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeee-ccceEEEEeecCCceeeeeeccccc
Confidence 34556678888888888888777777654332 22222 222334444444 2233333 334455666666556
Q ss_pred eEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEE
Q 010470 343 YCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFD 422 (510)
Q Consensus 343 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d 422 (510)
.+...+.+-+-+..++|+||+++|+++..|..|++-.......+..+...|..-|..++.-++ ..|++++.|+++++||
T Consensus 143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWD 221 (390)
T ss_pred CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEe
Confidence 666666666779999999999999999999999998888777788887766688999998765 5589999999999999
Q ss_pred cCCceeeeEee
Q 010470 423 IRSLEVCGSLR 433 (510)
Q Consensus 423 ~~~~~~~~~~~ 433 (510)
+.+++...++.
T Consensus 222 ~~sgk~L~t~d 232 (390)
T KOG3914|consen 222 ITSGKLLDTCD 232 (390)
T ss_pred cccCCcccccc
Confidence 99998876654
No 307
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.10 E-value=4.3e-07 Score=80.26 Aligned_cols=228 Identities=16% Similarity=0.166 Sum_probs=151.4
Q ss_pred eeEEEEecC-CCEEEEEeCCC-eEEEEEcCCCCeeEeecCCCCce--EEEEEecCCCCEEEEEeC-----CCcEEEEECC
Q 010470 270 VLDLAITHD-NRSVIAASSSN-NLYVWDVNSGRVRHTLTGHTDKV--CAVDVSKISSRHVVSAAY-----DRTLKVWDLH 340 (510)
Q Consensus 270 v~~~~~~~~-~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~v--~~i~~~~~~~~~l~s~~~-----dg~i~iwd~~ 340 (510)
...++.+|. ...++.+-.-| ...+||..+++....+....+.- -...|++ ++.+|++.-. .|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECc
Confidence 356788884 44555565555 57899999998877765433332 1256888 8888887644 4899999998
Q ss_pred -CCeEeeeeeecC-ceeEEEEcCCCCEEEEecC------------------CCcEEEEECCCCceeeeecc---cccccE
Q 010470 341 -KGYCVNTIIFHS-NCNALAFSMDGQTIFSGHI------------------DGNLRLWDIQTGKLLSEVAA---HSLAAV 397 (510)
Q Consensus 341 -~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~~~~~---~~~~~i 397 (510)
+-..+..+..+. .+..+.+.|||..|+++.. +-++...|..+|+.+..... .+...+
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 555666665543 4778889999988877532 22466677888888777443 223689
Q ss_pred EEEEEcCCCCEEEEEecCCc-------EEEEEcCCceeeeEeecCC---CeeecCceeEEEcCCCCEEEEEc-CCCeEEE
Q 010470 398 TSISLSRSGNIILTSGRDNL-------HNLFDIRSLEVCGSLRATG---NRVASNWSRSCISPDESYVAAGS-ADGSVYI 466 (510)
Q Consensus 398 ~~i~~~~~~~~l~~~~~d~~-------i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~i 466 (510)
.-+++.++|..++..-..|. +-+++. +.....+.... ......+.+++++++|.++++.+ ..|.+.+
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 99999999988777655442 333332 22222222221 12233455699999999886655 4678999
Q ss_pred EeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCC
Q 010470 467 WSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKN 503 (510)
Q Consensus 467 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 503 (510)
||..++..+...... .+..++-.+++ ++++.+..
T Consensus 244 ~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 244 WDAATGRLLGSVPLP--DACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred EECCCCCEeeccccC--ceeeeeecCCc-eEEeCCCc
Confidence 999999988776533 36677777766 56665544
No 308
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.08 E-value=8.9e-10 Score=107.23 Aligned_cols=180 Identities=18% Similarity=0.325 Sum_probs=138.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEE
Q 010470 321 SSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTS 399 (510)
Q Consensus 321 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~ 399 (510)
++..++.|+....+..+|+++.+..+...... .+.-++. +++++++|...|+|.+-|.++.+.+.++..|. +.+..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs-~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS-GSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccc-cceee
Confidence 45677778888889999999988877776654 4555544 68999999999999999999999999999998 77766
Q ss_pred EEEcCCCCEEEEEec---------CCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCC-CCEEEEEcCCCeEEEEeC
Q 010470 400 ISLSRSGNIILTSGR---------DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD-ESYVAAGSADGSVYIWSI 469 (510)
Q Consensus 400 i~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~i~iwd~ 469 (510)
+.. .|+.|++++. |..|+|||+|+.+.+..+..+..+.. +.|.|. ...+++.+..|...+-|.
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~f-----lrf~Psl~t~~~V~S~sGq~q~vd~ 295 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQF-----LRFHPSLTTRLAVTSQSGQFQFVDT 295 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchh-----hhhcccccceEEEEecccceeeccc
Confidence 554 6899999875 44689999998887766665555432 566774 446777888899999984
Q ss_pred CC-cce---eecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 470 SK-ADI---VRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 470 ~~-~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
.+ +.+ +.-+....+.+.+++++++|..++.|..+|.|.+|.
T Consensus 296 ~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 296 ATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 33 222 122222344589999999999999999999999994
No 309
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.08 E-value=2.7e-09 Score=89.02 Aligned_cols=167 Identities=15% Similarity=0.168 Sum_probs=109.8
Q ss_pred cceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc-eecccccccceeEEEEecCCCEEEEEeC-----CC
Q 010470 216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL-SSTLYGCLGSVLDLAITHDNRSVIAASS-----SN 289 (510)
Q Consensus 216 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~ 289 (510)
...+.+..|+++-.+-+.+-.++.+++++.||.+.+++.+.-.. ...+..-...-.+.++...++.+.++.. -+
T Consensus 80 ~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d 159 (319)
T KOG4714|consen 80 DPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQD 159 (319)
T ss_pred CceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecc
Confidence 34455556776666666666778999999999999999765211 1112211111223334445555554432 23
Q ss_pred eEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEee-eeee-cCceeEEEEcC-CCCEE
Q 010470 290 NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN-TIIF-HSNCNALAFSM-DGQTI 366 (510)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~-~~~i~~i~~~~-~~~~l 366 (510)
..++|+++..+....-......|.+++-+|...+.+++|+.||.+.+||.+...... .+.. ...+..+-|+| ++..|
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence 566777654332222222234499999999888889999999999999998764322 2222 35689999999 77899
Q ss_pred EEecCCCcEEEEECCC
Q 010470 367 FSGHIDGNLRLWDIQT 382 (510)
Q Consensus 367 ~~~~~dg~i~i~d~~~ 382 (510)
++++.||.+..||..+
T Consensus 240 ft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDAST 255 (319)
T ss_pred eEecCCCcEEEEcCCC
Confidence 9999999999999743
No 310
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=4.7e-10 Score=97.22 Aligned_cols=161 Identities=17% Similarity=0.244 Sum_probs=126.0
Q ss_pred EEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCC-----ceeeeecccccccEEEE
Q 010470 326 VSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTG-----KLLSEVAAHSLAAVTSI 400 (510)
Q Consensus 326 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~i~~i 400 (510)
++.+.+-.|-+-|+.+|.. +.+...++|.+..|...++.++.|+.+|.|..+|++.. .+...+... +.|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~--Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHD--SSVTSL 304 (425)
T ss_pred ecccccceeEEEEeecccc-cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcC--cchhhh
Confidence 5566688899999987753 44556678999999988999999999999999999864 344444433 789998
Q ss_pred EEcC-CCCEEEEEecCCcEEEEEcCCcee---eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceee
Q 010470 401 SLSR-SGNIILTSGRDNLHNLFDIRSLEV---CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVR 476 (510)
Q Consensus 401 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 476 (510)
..-. ++.+|.+++.+|.|++||++.-+. +..+.+|.+.... ..+.+.+....|++++.|...+||.+++|.++.
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~--l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ 382 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAY--LPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC 382 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccc--cccccccccceEEEccCeeEEEEEecccCceee
Confidence 8776 789999999999999999997665 7777777665443 225567888899999999999999999999998
Q ss_pred cccccCc----CEEEEEEe
Q 010470 477 TLKEHTA----PVLSCSWS 491 (510)
Q Consensus 477 ~~~~~~~----~v~~~~~~ 491 (510)
+++.... .+.+++|.
T Consensus 383 tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 383 TIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred ccCCCCccccccccceehh
Confidence 8865332 34555654
No 311
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.04 E-value=9.5e-07 Score=78.11 Aligned_cols=229 Identities=17% Similarity=0.199 Sum_probs=152.3
Q ss_pred eEEEEEec-CCCEEEEeeCCCe-EEEEeCCCCcceecccccccce--eEEEEecCCCEEEEEeC-----CCeEEEEEcC-
Q 010470 228 CASILFEY-NSARLISGGQDKS-IKLWDTNTGSLSSTLYGCLGSV--LDLAITHDNRSVIAASS-----SNNLYVWDVN- 297 (510)
Q Consensus 228 v~~~~~s~-~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-----d~~i~iwd~~- 297 (510)
...++.+| .+..++.+-.-|. ..+||..++.....+....+.- -.-+|++||++|++.-+ .|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 34567778 4556666666654 7889999888776554322221 13689999999999754 4799999998
Q ss_pred CCCeeEeecCCCCceEEEEEecCCCCEEEEEe------------------CCCcEEEEECCCCeEeeeeeec-----Cce
Q 010470 298 SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAA------------------YDRTLKVWDLHKGYCVNTIIFH-----SNC 354 (510)
Q Consensus 298 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~------------------~dg~i~iwd~~~~~~~~~~~~~-----~~i 354 (510)
+.+.+..+..|.-....+.+.| ++..|+++- .+-++...|..+|..+...... ..+
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 5667788888877778888988 665555442 1345667788889888776542 258
Q ss_pred eEEEEcCCCCEEEEecCCCc-------EEEEECCCCceeeeeccc------ccccEEEEEEcCCCCEEEEEe-cCCcEEE
Q 010470 355 NALAFSMDGQTIFSGHIDGN-------LRLWDIQTGKLLSEVAAH------SLAAVTSISLSRSGNIILTSG-RDNLHNL 420 (510)
Q Consensus 355 ~~i~~~~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~~~------~~~~i~~i~~~~~~~~l~~~~-~d~~i~i 420 (510)
..+++.++|..++..-..|. |.+++ .+..+..+... -...+-+|++++++.++++++ ..|.+.+
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 99999999987776544442 44444 23323323221 126799999999998776555 6789999
Q ss_pred EEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEE
Q 010470 421 FDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIW 467 (510)
Q Consensus 421 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iw 467 (510)
||..++..+........ +.++..+++ ++++.+ .|.+...
T Consensus 244 ~d~~tg~~~~~~~l~D~------cGva~~~~~-f~~ssG-~G~~~~~ 282 (305)
T PF07433_consen 244 WDAATGRLLGSVPLPDA------CGVAPTDDG-FLVSSG-QGQLIRL 282 (305)
T ss_pred EECCCCCEeeccccCce------eeeeecCCc-eEEeCC-CccEEEc
Confidence 99999988766654332 225555555 454444 4544333
No 312
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.04 E-value=7.4e-09 Score=86.49 Aligned_cols=196 Identities=12% Similarity=0.116 Sum_probs=115.4
Q ss_pred eEEEEEecCCCEEEEeeCCCeEEEEeCCCCcce------------ecccccccceeEEEEecCCCEEEEEeCCCeEEEEE
Q 010470 228 CASILFEYNSARLISGGQDKSIKLWDTNTGSLS------------STLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD 295 (510)
Q Consensus 228 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 295 (510)
|+.+.|+.+ ..|+++..++.+..+....+.+. ..+..|.++-.+-+.+-.++.++++..||.+.+++
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 666666543 36677766666655544333221 22222333222223333466799999999999998
Q ss_pred cCCCC-eeEeecCCCCceEEEEEecCCCCEEEEEeC-----CCcEEEEECCCCeEe-eeeeecCceeEEEEcCCC-CEEE
Q 010470 296 VNSGR-VRHTLTGHTDKVCAVDVSKISSRHVVSAAY-----DRTLKVWDLHKGYCV-NTIIFHSNCNALAFSMDG-QTIF 367 (510)
Q Consensus 296 ~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~-~~~~~~~~i~~i~~~~~~-~~l~ 367 (510)
.+... ..+.+......-.+.++.. .++.+.+++- -+..+.|+++..+.. ........+.+++-+|.. +.++
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~-~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~ 196 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICR-HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVC 196 (319)
T ss_pred chHHHhhhhhcccccccccccceee-cccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEE
Confidence 76411 1111111111111222222 2444444331 234556665432211 111122348899999954 5666
Q ss_pred EecCCCcEEEEECCCCceeeeecccccccEEEEEEcC-CCCEEEEEecCCcEEEEEcCC
Q 010470 368 SGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSR-SGNIILTSGRDNLHNLFDIRS 425 (510)
Q Consensus 368 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~i~d~~~ 425 (510)
+|+.||.+-+||.++...+..+...+..++.-+-|+| ++..|++++.||.+.-||..+
T Consensus 197 cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 197 CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 8899999999999988666555544458999999999 567899999999999999864
No 313
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.03 E-value=2.9e-07 Score=77.32 Aligned_cols=258 Identities=15% Similarity=0.091 Sum_probs=145.9
Q ss_pred CCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEE
Q 010470 237 SARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVD 316 (510)
Q Consensus 237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~ 316 (510)
|++++.|+..|.+++.+..+|.....+.....--......+++..+..++.|++.+..|..+..++.+.+...+...+-.
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~ 142 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPV 142 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccce
Confidence 67899999999999999999977666554332223345677899999999999999999999888888775555444555
Q ss_pred EecCCCCEEEEEeCCCcEEEEECCCC--eEeeeeeecCceeE--EEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccc
Q 010470 317 VSKISSRHVVSAAYDRTLKVWDLHKG--YCVNTIIFHSNCNA--LAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH 392 (510)
Q Consensus 317 ~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~i~~--i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 392 (510)
..| ....++.+...|.+.--..+.+ ..+.......++-+ +++ +..+..++-||.+.-+| ..|+.+..+...
T Consensus 143 i~~-g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~ 217 (354)
T KOG4649|consen 143 IAP-GDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPATK 217 (354)
T ss_pred ecC-CCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeecCC
Confidence 566 3445555555666665555444 22222222222211 222 34455566677777777 566666654433
Q ss_pred ccccEEE-EEEc-CCCCEEEEEecCC--------cEEEEEcCCceeeeEeecCCCeeecCceeEEE-cC---CCCEEEEE
Q 010470 393 SLAAVTS-ISLS-RSGNIILTSGRDN--------LHNLFDIRSLEVCGSLRATGNRVASNWSRSCI-SP---DESYVAAG 458 (510)
Q Consensus 393 ~~~~i~~-i~~~-~~~~~l~~~~~d~--------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-s~---~~~~l~~~ 458 (510)
++|.. -+.+ |..+.+..+..+- .-.+|...++...+.+..+.-. ..+ +| ..+++..+
T Consensus 218 --GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~l~-------F~~h~~~~S~~~ll~~~ 288 (354)
T KOG4649|consen 218 --GPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPKLR-------FDLHSPGISYPKLLRRS 288 (354)
T ss_pred --CceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcccc-------eeccCCCCcchhhhhhh
Confidence 33221 1112 3333333333332 2235655555333333222111 111 12 24567788
Q ss_pred cCCCeEEEEeCCCcceeecccccCcCEEEEE--------Ee-CC--CCcEEEeeCCCeEEEcC
Q 010470 459 SADGSVYIWSISKADIVRTLKEHTAPVLSCS--------WS-GL--GKPLASADKNGVVCVWT 510 (510)
Q Consensus 459 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~--------~~-~~--~~~l~s~~~dg~i~iwd 510 (510)
+.||.+.|..+... +.....|.+.+..+. |+ |- +..|+.|+.|..++-||
T Consensus 289 s~dgkv~il~~~~s--l~~~~s~~g~lq~~~~~el~~eIFsSPvii~grl~igcRDdYv~cld 349 (354)
T KOG4649|consen 289 SGDGKVMILMTSKS--LAEISSNGGELQNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLD 349 (354)
T ss_pred cCCCcEEEEEeccc--ccccccCCCccceEEEeecCcccccCCeEEccEEEEEEccCeEEEEe
Confidence 89999988854322 333333333322221 11 10 23577788888999886
No 314
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=99.02 E-value=3.2e-07 Score=90.37 Aligned_cols=261 Identities=15% Similarity=0.205 Sum_probs=161.6
Q ss_pred CCEEEEeeCCCeEEEEeCCCCcceeccccccc------cee--EEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCC
Q 010470 237 SARLISGGQDKSIKLWDTNTGSLSSTLYGCLG------SVL--DLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGH 308 (510)
Q Consensus 237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 308 (510)
+..++.++.++.|.-.|..+|+.+..+..... .+. .+.+. ++..++.++.++.|+.+|..+|+.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 44677788889999999999988766543221 110 11111 2267888889999999999999998887643
Q ss_pred CCc-----eE-EEEEecCCCCEEEEEe---------CCCcEEEEECCCCeEeeeeeecCc--------------------
Q 010470 309 TDK-----VC-AVDVSKISSRHVVSAA---------YDRTLKVWDLHKGYCVNTIIFHSN-------------------- 353 (510)
Q Consensus 309 ~~~-----v~-~i~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~-------------------- 353 (510)
... +. +..+. +..++.++ .+|.+..+|..+|+.+..+.....
T Consensus 140 ~~~~~~~~i~ssP~v~---~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ 216 (488)
T cd00216 140 DQVPPGYTMTGAPTIV---KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG 216 (488)
T ss_pred CCcCcceEecCCCEEE---CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence 321 11 11221 24455543 368899999999998887754311
Q ss_pred -e-eEEEEcCCCCEEEEecCCC------------------cEEEEECCCCceeeeecccccc-----cEEEEEEc----C
Q 010470 354 -C-NALAFSMDGQTIFSGHIDG------------------NLRLWDIQTGKLLSEVAAHSLA-----AVTSISLS----R 404 (510)
Q Consensus 354 -i-~~i~~~~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~~~~~-----~i~~i~~~----~ 404 (510)
+ ...++.+.+..+++++.++ .|.-+|..+|+....+...... ......+. -
T Consensus 217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~ 296 (488)
T cd00216 217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPK 296 (488)
T ss_pred CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecccc
Confidence 0 1344555567788887665 6999999999998887532100 00001111 1
Q ss_pred CCC---EEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEE------------------cCCCe
Q 010470 405 SGN---IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAG------------------SADGS 463 (510)
Q Consensus 405 ~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~------------------~~dg~ 463 (510)
+|. .+++++.+|.+..+|..+++.+......... +..+| ..++.+ ..+|.
T Consensus 297 ~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~-------~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~ 367 (488)
T cd00216 297 DGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQP-------MAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG 367 (488)
T ss_pred CCCeeEEEEEECCCceEEEEECCCCcEeeEeEeeccc-------cccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence 333 6788889999999999999988766533111 22333 222222 24678
Q ss_pred EEEEeCCCcceeecccccC--------cCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 464 VYIWSISKADIVRTLKEHT--------APVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 464 i~iwd~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
|.-+|+.+|+.+....... .+...-.....+..|+.++.||.|+.+|
T Consensus 368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence 8888998888876654320 1111111112456788888899887664
No 315
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.01 E-value=5.3e-09 Score=92.84 Aligned_cols=162 Identities=20% Similarity=0.326 Sum_probs=114.0
Q ss_pred ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc---eecccccccceeEEEEecCCCEEEEEeCCC---eEEEEEcCCCC
Q 010470 227 GCASILFEYNSARLISGGQDKSIKLWDTNTGSL---SSTLYGCLGSVLDLAITHDNRSVIAASSSN---NLYVWDVNSGR 300 (510)
Q Consensus 227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~ 300 (510)
.+..+.+++.++++|++..+....++++..... ......-....+.+.|..+...+..+..-| .+.+|....+.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 345566778888888888888877777654332 111112223345566666666666665444 45555555443
Q ss_pred eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee-cC-ceeEEEEcCCCCEEEEecCCCcEEEE
Q 010470 301 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF-HS-NCNALAFSMDGQTIFSGHIDGNLRLW 378 (510)
Q Consensus 301 ~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~-~i~~i~~~~~~~~l~~~~~dg~i~i~ 378 (510)
...+-||-.-++.++|+| ++.+|+++..|..|++-....-..+..+.. |. -|..+++.+ +..|++|+.|++|++|
T Consensus 144 -~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 144 -CEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLW 220 (390)
T ss_pred -cchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEE
Confidence 334567999999999999 789999999999999988876666666654 32 388888874 5568999999999999
Q ss_pred ECCCCceeeeecc
Q 010470 379 DIQTGKLLSEVAA 391 (510)
Q Consensus 379 d~~~~~~~~~~~~ 391 (510)
|+++|+.+..+..
T Consensus 221 d~~sgk~L~t~dl 233 (390)
T KOG3914|consen 221 DITSGKLLDTCDL 233 (390)
T ss_pred ecccCCcccccch
Confidence 9999998866543
No 316
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.00 E-value=1.6e-09 Score=103.06 Aligned_cols=208 Identities=17% Similarity=0.260 Sum_probs=150.0
Q ss_pred cceeeccccccceEEEEEecC-CCEEEEeeCCCeEEEEeCCCCcc-eecccccccceeEEEEecCCCEEEEEeCCCeEEE
Q 010470 216 TCKHKINAHEGGCASILFEYN-SARLISGGQDKSIKLWDTNTGSL-SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYV 293 (510)
Q Consensus 216 ~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 293 (510)
.....+.||..+|+.+.|+|. ...+++++.|-.+..||+.+... +.....-....+.+.|+-....+++.+..+.|.+
T Consensus 105 aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~v 184 (1081)
T KOG0309|consen 105 AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFV 184 (1081)
T ss_pred ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEE
Confidence 355678899999999999985 45889999999999999976543 4444444556678999887777888888889999
Q ss_pred EEcCCCC-eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe--EeeeeeecCceeEEEEcCCCC--EEEE
Q 010470 294 WDVNSGR-VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY--CVNTIIFHSNCNALAFSMDGQ--TIFS 368 (510)
Q Consensus 294 wd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~i~~i~~~~~~~--~l~~ 368 (510)
||++.|. ++..+++|...|..+.|+......+.+++.||+|+.||..... ...++....++.--++.|-|. ++.-
T Consensus 185 wd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp 264 (1081)
T KOG0309|consen 185 WDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMP 264 (1081)
T ss_pred EeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEecc
Confidence 9998764 8889999999999999987667789999999999999987543 333344445566666666443 2221
Q ss_pred ecCCCcEEEEECC----------CCceeeeecccccccEEEEEEcCC----------CCEEEEEecCCcEEEEEcC
Q 010470 369 GHIDGNLRLWDIQ----------TGKLLSEVAAHSLAAVTSISLSRS----------GNIILTSGRDNLHNLFDIR 424 (510)
Q Consensus 369 ~~~dg~i~i~d~~----------~~~~~~~~~~~~~~~i~~i~~~~~----------~~~l~~~~~d~~i~i~d~~ 424 (510)
--.+..+.+++.+ ...++..|.+|. ..|....|-.. .-.|++-+.|..+++|-+.
T Consensus 265 ~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~-D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 265 MVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHD-DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred ccCCeeeeeccccchhhhhccccCCcceeeecCcc-hHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 1112234444332 235777888876 55554444321 2268999999999999875
No 317
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.00 E-value=2.3e-07 Score=79.40 Aligned_cols=199 Identities=13% Similarity=0.157 Sum_probs=118.2
Q ss_pred eEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccc-------cccceeEEEEecCC------CEEEEEeCCCeEEEE
Q 010470 228 CASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYG-------CLGSVLDLAITHDN------RSVIAASSSNNLYVW 294 (510)
Q Consensus 228 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~------~~l~~~~~d~~i~iw 294 (510)
=.-++||||+..||.+.+.|+|++||+.... +..+.. -...|..+.|.+.. ..|++-..+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 4678999999999999999999999997433 223221 23466777775432 257777888888877
Q ss_pred EcCCC-----CeeEeec---CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEE
Q 010470 295 DVNSG-----RVRHTLT---GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTI 366 (510)
Q Consensus 295 d~~~~-----~~~~~~~---~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l 366 (510)
-+..+ +..+.+. .+...|.++.++| ..++|+.||.... .++. .......+++-.+..+..+.
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~LLlVgG~~~~------~~~~---s~a~~~GLtaWRiL~~~Pyy 194 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KHRLLLVGGCEQN------QDGM---SKASSCGLTAWRILSDSPYY 194 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcC-CCCEEEEeccCCC------CCcc---ccccccCceEEEEcCCCCcE
Confidence 76332 2333333 2467899999999 6677776664321 0000 00001112222221111111
Q ss_pred --EEecCCC------cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCe
Q 010470 367 --FSGHIDG------NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNR 438 (510)
Q Consensus 367 --~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 438 (510)
++...++ +..+|.+-+.+.... .......|..|..||||..|++...+|.|.+|++.+......+.....+
T Consensus 195 k~v~~~~~~~~~~~~~~~~~~~~~~~~fs~-~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eqP 273 (282)
T PF15492_consen 195 KQVTSSEDDITASSKRRGLLRIPSFKFFSR-QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQP 273 (282)
T ss_pred EEccccCccccccccccceeeccceeeeec-cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhCC
Confidence 1111111 112333332222221 1223378999999999999999999999999999987777666554433
No 318
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.99 E-value=1.4e-06 Score=73.33 Aligned_cols=143 Identities=13% Similarity=0.069 Sum_probs=99.0
Q ss_pred CCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEE-E
Q 010470 237 SARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCA-V 315 (510)
Q Consensus 237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~-i 315 (510)
..+++.|+..+.+.-.|..+|+....-. -...+-+-+.- -|++++.|+..|.+++.+..+|.....+... +.|.+ .
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~~a 99 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKVRA 99 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh-hhhccce
Confidence 4578889999999999999988755422 12233322222 4778999999999999999999888777643 23332 2
Q ss_pred EEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc-eeEEEEcCCCCEEEEecCCCcEEEEECCCC
Q 010470 316 DVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTG 383 (510)
Q Consensus 316 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~ 383 (510)
...+ ++..+..|+.|+..+..|.++..++......+. ..+-++.|-...|+.+...|.+.--.....
T Consensus 100 ~~d~-~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 100 QCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred EEcC-CCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 3334 789999999999999999999999988776654 345556663334454555566555554433
No 319
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=9.8e-08 Score=93.00 Aligned_cols=203 Identities=16% Similarity=0.219 Sum_probs=134.0
Q ss_pred EEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCc-eEEEEEecCCCCEEEEEeCCC-----cEEEEECCCC-----
Q 010470 274 AITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDK-VCAVDVSKISSRHVVSAAYDR-----TLKVWDLHKG----- 342 (510)
Q Consensus 274 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~i~~~~~~~~~l~s~~~dg-----~i~iwd~~~~----- 342 (510)
+|++.+..++.|+.+|.|.+++ ++-+.++.+..+... |..+.... ..+++++.+.|+ .++|||++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 5678899999999999998887 445556777777766 44444333 557888877765 4899998632
Q ss_pred -eEe---eeee-----ecCceeEEEEcCCCCEEEEecCCCcEEEEECC---CCceeeeecccccccEEEEEEcCCCCEEE
Q 010470 343 -YCV---NTII-----FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQ---TGKLLSEVAAHSLAAVTSISLSRSGNIIL 410 (510)
Q Consensus 343 -~~~---~~~~-----~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 410 (510)
.++ +.+. .+.++.+++++.+-+.+++|-.+|.|..+.-. .......+......+|+.+.+..++..++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 233 2222 12457889999999999999999999998532 11112223333448999999999988744
Q ss_pred EEecCCcEEEEEcCCcee-eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeeccc-ccCc
Q 010470 411 TSGRDNLHNLFDIRSLEV-CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLK-EHTA 483 (510)
Q Consensus 411 ~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~ 483 (510)
....-..|.+|.+....+ ...+..++.... +..+++....+++++.. .+.+|+.+...+-..+. +|..
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~ln----Css~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLN----CSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred EEEecceeEEEEecCCCcceeeeccCCccce----eeecCCCCccEEEecCc-eEEEEcCCCcceeeeecCCCeE
Confidence 444456788999874442 233444444443 35666655535555544 49999988766666665 5543
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=3e-08 Score=95.73 Aligned_cols=186 Identities=19% Similarity=0.223 Sum_probs=133.7
Q ss_pred cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeee
Q 010470 268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT 347 (510)
Q Consensus 268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 347 (510)
..++|++++ ++.++.|+.+|.|++++.. +.+ .+...|... ..+|.++++|+.||.|.|..+-++....+
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~-------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS-------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc-------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 455666664 7789999999999999965 333 333335443 23799999999999999999999999999
Q ss_pred eeecCceeEEEEcCC-----CCEEEEecCCCcEEEEECCC-CceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEE
Q 010470 348 IIFHSNCNALAFSMD-----GQTIFSGHIDGNLRLWDIQT-GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLF 421 (510)
Q Consensus 348 ~~~~~~i~~i~~~~~-----~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~ 421 (510)
+..+.++.+++++|+ .+.+++|+.-| +.++.-+- |...........++|.++.|. |++++-++.+| |+||
T Consensus 109 ~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vy 184 (846)
T KOG2066|consen 109 YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVY 184 (846)
T ss_pred EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEE
Confidence 999999999999997 56789999888 77776331 111111222333899999995 77887776665 8899
Q ss_pred EcCCceeeeEeecCCCeeec--CceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470 422 DIRSLEVCGSLRATGNRVAS--NWSRSCISPDESYVAAGSADGSVYIWSIS 470 (510)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 470 (510)
|+.+.+.+..+..+...+.. ....+.|.++.+ |+.|-.| +|+|..+.
T Consensus 185 d~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 185 DTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGD-SVKICSIK 233 (846)
T ss_pred eccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCC-eEEEEEEe
Confidence 99998888777665543332 123466766554 4445444 58888887
No 321
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=3.2e-09 Score=92.19 Aligned_cols=158 Identities=19% Similarity=0.317 Sum_probs=123.9
Q ss_pred EEec--CCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC-----CeeEe
Q 010470 232 LFEY--NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG-----RVRHT 304 (510)
Q Consensus 232 ~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----~~~~~ 304 (510)
+|+- .|-. ++.|.+-.|-+-|+++|-. ..+ ...+.|.++.|...+++++.|+.+|.|..+|++.. .+.+.
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeecccc-ccc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 5553 2334 5555677888999988753 223 36788999999998999999999999999999864 24444
Q ss_pred ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE---eeeeeecCc---eeEEEEcCCCCEEEEecCCCcEEEE
Q 010470 305 LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC---VNTIIFHSN---CNALAFSMDGQTIFSGHIDGNLRLW 378 (510)
Q Consensus 305 ~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~---i~~i~~~~~~~~l~~~~~dg~i~i~ 378 (510)
+. |...|+++.....++.+|++.+.+|.|++||++--++ +.++.+|.+ ..-+-+.+....+++++.|...+||
T Consensus 295 ly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiW 373 (425)
T KOG2695|consen 295 LY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIW 373 (425)
T ss_pred EE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEE
Confidence 44 8999999988776788999999999999999987666 777777643 3445566777888999999999999
Q ss_pred ECCCCceeeeecccc
Q 010470 379 DIQTGKLLSEVAAHS 393 (510)
Q Consensus 379 d~~~~~~~~~~~~~~ 393 (510)
.++.|..+.++....
T Consensus 374 sl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 374 SLDSGHLLCTIPFPY 388 (425)
T ss_pred ecccCceeeccCCCC
Confidence 999999888877553
No 322
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=3.9e-08 Score=95.04 Aligned_cols=183 Identities=11% Similarity=0.117 Sum_probs=133.2
Q ss_pred ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEe
Q 010470 225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT 304 (510)
Q Consensus 225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 304 (510)
...++|++++ +++|+-|+.+|.|++++.+.. . .+...|+.. ..+|.++++|+.||+|.|..+.+.+...+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 3567888887 679999999999999998733 3 444445444 56899999999999999999998887777
Q ss_pred ecCCCCceEEEEEecC----CCCEEEEEeCCCcEEEEECC---CCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEE
Q 010470 305 LTGHTDKVCAVDVSKI----SSRHVVSAAYDRTLKVWDLH---KGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRL 377 (510)
Q Consensus 305 ~~~~~~~v~~i~~~~~----~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i 377 (510)
+. ...++.+++++|+ ..+.+++||.-| +.++.-+ ....+......++|.+++|. |++++-++.+| |++
T Consensus 109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~v 183 (846)
T KOG2066|consen 109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKV 183 (846)
T ss_pred Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEE
Confidence 76 4578999999994 357899999888 7776532 11222222344679999995 89999888776 999
Q ss_pred EECCCCceeeeeccccc-----ccEEEEEEcCCCCEEEEEecCCcEEEEEcC
Q 010470 378 WDIQTGKLLSEVAAHSL-----AAVTSISLSRSGNIILTSGRDNLHNLFDIR 424 (510)
Q Consensus 378 ~d~~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 424 (510)
||+.+++.+..+..+.. .....+.|.++.+ |+.| ...+|+|..++
T Consensus 184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK 233 (846)
T ss_pred EeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence 99999888877765541 1234567766544 4444 44478888777
No 323
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=2.4e-06 Score=76.32 Aligned_cols=244 Identities=17% Similarity=0.166 Sum_probs=143.3
Q ss_pred eeeccccccceEEEEEecCCC-EEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCC-EEEEEeCCCeEEEEE
Q 010470 218 KHKINAHEGGCASILFEYNSA-RLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR-SVIAASSSNNLYVWD 295 (510)
Q Consensus 218 ~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd 295 (510)
..-+.+|...|..++|||... ++..++.+..|+|.|+++...+..+..+ ..+++++|.-|.. +|++|..+|.|.|||
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence 345677888999999999776 7888999999999999999988888877 8899999987765 566677899999999
Q ss_pred cCCCC-eeEeecC--CCCceEEEEEecC-----CCCEEEEEeCCCcEEEEECC----CCeEeeeeeecCceeEEEEcCCC
Q 010470 296 VNSGR-VRHTLTG--HTDKVCAVDVSKI-----SSRHVVSAAYDRTLKVWDLH----KGYCVNTIIFHSNCNALAFSMDG 363 (510)
Q Consensus 296 ~~~~~-~~~~~~~--~~~~v~~i~~~~~-----~~~~l~s~~~dg~i~iwd~~----~~~~~~~~~~~~~i~~i~~~~~~ 363 (510)
++..+ +...+.+ ...+|..++..+. .+.+++..+. .+..|++. ...++..+..++.+.++.+++..
T Consensus 265 ~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~s 342 (463)
T KOG1645|consen 265 MRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQYHGVS 342 (463)
T ss_pred ccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeeeecCcc
Confidence 98654 2222222 2345555443331 2333443332 24455543 12223333334556666776655
Q ss_pred CEEEEecCC-Cc------EE-EEECCCCceeeeecccc-cc------cEEEEEEcCCCCEEEE-EecCCcEEEEEcCCce
Q 010470 364 QTIFSGHID-GN------LR-LWDIQTGKLLSEVAAHS-LA------AVTSISLSRSGNIILT-SGRDNLHNLFDIRSLE 427 (510)
Q Consensus 364 ~~l~~~~~d-g~------i~-i~d~~~~~~~~~~~~~~-~~------~i~~i~~~~~~~~l~~-~~~d~~i~i~d~~~~~ 427 (510)
+.++..... .+ |- --|.++|.++....... .+ .-..+.-.+++++++. ++..+.+.+||..+++
T Consensus 343 nh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~e 422 (463)
T KOG1645|consen 343 NHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFE 422 (463)
T ss_pred ceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhh
Confidence 555543322 10 00 11223444433222111 01 0111222345555544 4455789999999999
Q ss_pred eeeEeecCCCeeecCceeEEE-cCC-CCEEEEEcCCCeEEEEeCC
Q 010470 428 VCGSLRATGNRVASNWSRSCI-SPD-ESYVAAGSADGSVYIWSIS 470 (510)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~-s~~-~~~l~~~~~dg~i~iwd~~ 470 (510)
.+..+.... ++.. ++. .-+ +.||++-. |..++||...
T Consensus 423 vvQ~l~~~e-pv~D----icp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 423 VVQTLALSE-PVLD----ICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred eeeecccCc-ceee----cceeecCCcchhhhee-cceEEEEecC
Confidence 998887652 2211 222 223 44666555 5568888643
No 324
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.93 E-value=1.1e-06 Score=86.53 Aligned_cols=234 Identities=16% Similarity=0.156 Sum_probs=147.3
Q ss_pred CEEEEeeCCCeEEEEeCCCCcceecccccccc-----e-eEEEEecCCCEEEEEe---------CCCeEEEEEcCCCCee
Q 010470 238 ARLISGGQDKSIKLWDTNTGSLSSTLYGCLGS-----V-LDLAITHDNRSVIAAS---------SSNNLYVWDVNSGRVR 302 (510)
Q Consensus 238 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----v-~~~~~~~~~~~l~~~~---------~d~~i~iwd~~~~~~~ 302 (510)
..++.++.+|.|.-+|..+|+.+..+...... + ....+. +..+++++ .+|.+..+|..+|+.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 67888888999999999999987665532220 1 112222 24455554 3678999999999988
Q ss_pred EeecCCCCc--------------------eE-EEEEecCCCCEEEEEeCCC------------------cEEEEECCCCe
Q 010470 303 HTLTGHTDK--------------------VC-AVDVSKISSRHVVSAAYDR------------------TLKVWDLHKGY 343 (510)
Q Consensus 303 ~~~~~~~~~--------------------v~-~i~~~~~~~~~l~s~~~dg------------------~i~iwd~~~~~ 343 (510)
..+...... +. ...+.+ .+..++.++.++ .|.-+|..+|+
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 877542110 11 123333 356677776554 79999999999
Q ss_pred EeeeeeecCc-e------eEEEEc----CCCC---EEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEE
Q 010470 344 CVNTIIFHSN-C------NALAFS----MDGQ---TIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNII 409 (510)
Q Consensus 344 ~~~~~~~~~~-i------~~i~~~----~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 409 (510)
.+..+..... . ....+. -+|. .+++++.+|.++.+|..+|+.+....... ..+..+| ..+
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~----~~~~~~~--~~v 341 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE----QPMAYDP--GLV 341 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec----cccccCC--ceE
Confidence 9888753211 1 111111 1343 57788899999999999999888765321 1123333 223
Q ss_pred EEE------------------ecCCcEEEEEcCCceeeeEeecCCCeee----cCceeEEEcCCCCEEEEEcCCCeEEEE
Q 010470 410 LTS------------------GRDNLHNLFDIRSLEVCGSLRATGNRVA----SNWSRSCISPDESYVAAGSADGSVYIW 467 (510)
Q Consensus 410 ~~~------------------~~d~~i~i~d~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~~~l~~~~~dg~i~iw 467 (510)
+.+ ..+|.+.-+|+.+++.+-.......... ...........+.+|++++.||.|+.+
T Consensus 342 yv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~al 421 (488)
T cd00216 342 YLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAF 421 (488)
T ss_pred EEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEE
Confidence 222 2357888889998888776654411100 000000112356789999999999999
Q ss_pred eCCCcceeecccc
Q 010470 468 SISKADIVRTLKE 480 (510)
Q Consensus 468 d~~~~~~~~~~~~ 480 (510)
|..+|+.+..++.
T Consensus 422 d~~tG~~lW~~~~ 434 (488)
T cd00216 422 DATTGKELWKFRT 434 (488)
T ss_pred ECCCCceeeEEEC
Confidence 9999999888764
No 325
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.90 E-value=7.7e-07 Score=90.23 Aligned_cols=241 Identities=12% Similarity=0.105 Sum_probs=144.3
Q ss_pred cccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeE
Q 010470 224 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH 303 (510)
Q Consensus 224 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 303 (510)
..+.|.++.|..++.-++.+..+|.|.+-|..+.... ......+.|.+++|+||+..++..+..+++.+-+ .+..++.
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~ 144 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIA 144 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchh
Confidence 3468999999999999999999999999988766532 2233467899999999999999999988877654 2222222
Q ss_pred eecCC-----CCceEEEEEecCCCCEEEEEeCCCcEEEEECCC-CeEeeeeeecCceeEEEEcCCCCEEEE-----ecCC
Q 010470 304 TLTGH-----TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK-GYCVNTIIFHSNCNALAFSMDGQTIFS-----GHID 372 (510)
Q Consensus 304 ~~~~~-----~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~-----~~~d 372 (510)
...-+ .+....+-|-. . ..=+-|+ .|.....+... .+.......++.-++|+|--||.++++ ....
T Consensus 145 E~~L~~d~~~~sk~v~VGwGr-k-eTqfrgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGR-K-ETQFRGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred ccccccccccccccceecccc-c-ceeeecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 21111 11222233322 0 1111111 11111111110 011111122334567999999999987 2333
Q ss_pred CcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEe---cCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEc
Q 010470 373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG---RDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCIS 449 (510)
Q Consensus 373 g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s 449 (510)
..|++||-. |.. ........+--.+++|-|.|..+++-. .++.|.+|.-..... ..|......-...+..++|+
T Consensus 222 RkirV~drE-g~L-ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~h-g~f~l~~p~de~~ve~L~Wn 298 (1265)
T KOG1920|consen 222 RKIRVYDRE-GAL-NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRH-GEFVLPFPLDEKEVEELAWN 298 (1265)
T ss_pred eeEEEeccc-chh-hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccc-cccccCCcccccchheeeec
Confidence 689999965 433 333333335667899999999998754 455788887543221 22211111111124559999
Q ss_pred CCCCEEEE---EcCCCeEEEEeCCCc
Q 010470 450 PDESYVAA---GSADGSVYIWSISKA 472 (510)
Q Consensus 450 ~~~~~l~~---~~~dg~i~iwd~~~~ 472 (510)
.++..|++ ......|++|-+.+.
T Consensus 299 s~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 299 SNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CCCCceeeeecccccceEEEEEecCe
Confidence 99999988 444556999988763
No 326
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.86 E-value=7.2e-09 Score=62.56 Aligned_cols=38 Identities=29% Similarity=0.596 Sum_probs=36.1
Q ss_pred cceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEe
Q 010470 216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWD 253 (510)
Q Consensus 216 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 253 (510)
++..++.+|.++|++++|+|++.+|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999999999999999997
No 327
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=8.7e-06 Score=77.44 Aligned_cols=256 Identities=18% Similarity=0.219 Sum_probs=166.7
Q ss_pred EEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeC-CCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEE
Q 010470 249 IKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS-SNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVS 327 (510)
Q Consensus 249 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s 327 (510)
+.+++..+......+..+. ....+...+++..+..... ...+...+...................+.+++...+.+++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~ 91 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVT 91 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEe
Confidence 5555544444433333222 4566788888865555542 2245555544222222122111344567888855556777
Q ss_pred EeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecC---CCcEEEEECCCCceeeeecccccccEEEEEEcC
Q 010470 328 AAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI---DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSR 404 (510)
Q Consensus 328 ~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~ 404 (510)
...++.|.+.|..+............+..++++|++..++++.. ++.+.+.|..+++......... .+ ..++++|
T Consensus 92 ~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P-~~~a~~p 169 (381)
T COG3391 92 TGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-TP-TGVAVDP 169 (381)
T ss_pred cCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-Cc-ceEEECC
Confidence 77779999999988888888887778899999999988876654 6899999999888888755443 34 8999999
Q ss_pred CCCEEEEEe-cCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC---CeEEEEeCCCcceeec-cc
Q 010470 405 SGNIILTSG-RDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD---GSVYIWSISKADIVRT-LK 479 (510)
Q Consensus 405 ~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~-~~ 479 (510)
+|..+++.. .++.+.++|.......................+.++|+|.++++.... +.+...|..++..... ..
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~ 249 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP 249 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc
Confidence 999666655 788999999876655531101111222223347899999976665443 5899999988877665 22
Q ss_pred ccCcCEEEEEEeCCCCcEEEeeCC-CeEE
Q 010470 480 EHTAPVLSCSWSGLGKPLASADKN-GVVC 507 (510)
Q Consensus 480 ~~~~~v~~~~~~~~~~~l~s~~~d-g~i~ 507 (510)
........+..+|+|..+.+.... +.+.
T Consensus 250 ~~~~~~~~v~~~p~g~~~yv~~~~~~~V~ 278 (381)
T COG3391 250 VGSGAPRGVAVDPAGKAAYVANSQGGTVS 278 (381)
T ss_pred cccCCCCceeECCCCCEEEEEecCCCeEE
Confidence 211145678999999987776433 4444
No 328
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.83 E-value=1e-06 Score=85.21 Aligned_cols=217 Identities=11% Similarity=0.032 Sum_probs=135.5
Q ss_pred EecCCCEEEEe-eCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCC----eEEEEEcCCCCeeEeecC
Q 010470 233 FEYNSARLISG-GQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSN----NLYVWDVNSGRVRHTLTG 307 (510)
Q Consensus 233 ~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~ 307 (510)
++|||+.+... -..+.+.+.|.++.+...++.- .+....+.++|+|+++++.+.+. ++..-+..+......+..
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 45566655332 2346677888887776666543 22446788999999998887432 233332222111111111
Q ss_pred CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC-----CeEeeeeeecCceeEEEEcCCCCEEEEec-CCCcEEEEECC
Q 010470 308 HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK-----GYCVNTIIFHSNCNALAFSMDGQTIFSGH-IDGNLRLWDIQ 381 (510)
Q Consensus 308 ~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~ 381 (510)
.. +. .+.+ ++++... .++.|.++|..+ ...+..+..+..+..+.++|||+++++++ .+.+|.|+|+.
T Consensus 279 ~~--ie--a~vk-dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~ 351 (635)
T PRK02888 279 AR--IE--EAVK-AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVR 351 (635)
T ss_pred HH--HH--Hhhh-CCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEECh
Confidence 00 00 1223 4555554 267899999998 46777788888899999999999988654 58899999998
Q ss_pred CCce------------eeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC----------ceeeeEeecCCCee
Q 010470 382 TGKL------------LSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS----------LEVCGSLRATGNRV 439 (510)
Q Consensus 382 ~~~~------------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~----------~~~~~~~~~~~~~~ 439 (510)
+.+. +...... .......|+++|+...+-.-|..|..|++.+ ...+..+..+..+.
T Consensus 352 k~k~~~~~~~~~~~~vvaevevG--lGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pg 429 (635)
T PRK02888 352 KLDDLFDGKIKPRDAVVAEPELG--LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPG 429 (635)
T ss_pred hhhhhhhccCCccceEEEeeccC--CCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccc
Confidence 7553 3333332 4455688999999888889999999999875 34444444443332
Q ss_pred ecCc-eeEEEcCCCCEEEEEc
Q 010470 440 ASNW-SRSCISPDESYVAAGS 459 (510)
Q Consensus 440 ~~~~-~~~~~s~~~~~l~~~~ 459 (510)
.... ..=.-.|||+||++.+
T Consensus 430 h~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 430 HNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred eeeecCCCcCCCCCCEEEEcc
Confidence 2100 0011267888887764
No 329
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.83 E-value=3.7e-06 Score=79.39 Aligned_cols=260 Identities=21% Similarity=0.208 Sum_probs=142.5
Q ss_pred ecCCCEEEEee---------CCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEe
Q 010470 234 EYNSARLISGG---------QDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT 304 (510)
Q Consensus 234 s~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 304 (510)
|||+++++... ..+.+.|||+.++........ ...+....|+|+|+.++.... +.|++++..++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEET-TEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEec-CceEEEECCCCCeEEe
Confidence 57888776632 246799999998776444333 678899999999999888864 6899998877643322
Q ss_pred e-cC-------C---------CCceEEEEEecCCCCEEEEEeC-CCc---------------------------------
Q 010470 305 L-TG-------H---------TDKVCAVDVSKISSRHVVSAAY-DRT--------------------------------- 333 (510)
Q Consensus 305 ~-~~-------~---------~~~v~~i~~~~~~~~~l~s~~~-dg~--------------------------------- 333 (510)
- .+ - -+.-.++-|+| ++..|+.... +..
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~ 157 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPR 157 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---E
T ss_pred ccccceeEEcCccceeccccccccccceEECC-CCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCc
Confidence 1 11 0 11235677999 6666664432 222
Q ss_pred --EEEEECCCCeEeeeeee------cCceeEEEEcCCCCEEEE--ecCCC---cEEEEECCCCceeeeecccccccE---
Q 010470 334 --LKVWDLHKGYCVNTIIF------HSNCNALAFSMDGQTIFS--GHIDG---NLRLWDIQTGKLLSEVAAHSLAAV--- 397 (510)
Q Consensus 334 --i~iwd~~~~~~~~~~~~------~~~i~~i~~~~~~~~l~~--~~~dg---~i~i~d~~~~~~~~~~~~~~~~~i--- 397 (510)
+.|+|+.+++....-.. ..-+..+.|.+++..|++ ...+. .+.++|..++...........+.+
T Consensus 158 v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~ 237 (353)
T PF00930_consen 158 VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVY 237 (353)
T ss_dssp EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSS
T ss_pred eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeee
Confidence 33455555543211111 112678899998884443 23322 467778877655433332221222
Q ss_pred EEEEEc-CCCC-EEEEEecCCc--EEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEE-EEcCC----CeEEEEe
Q 010470 398 TSISLS-RSGN-IILTSGRDNL--HNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVA-AGSAD----GSVYIWS 468 (510)
Q Consensus 398 ~~i~~~-~~~~-~l~~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~d----g~i~iwd 468 (510)
..+.|. +++. ++.....+|. |.+++...+... .+......+.. .+.++++++.|+ ++..+ ..|+.-+
T Consensus 238 ~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~~~V~~---i~~~d~~~~~iyf~a~~~~p~~r~lY~v~ 313 (353)
T PF00930_consen 238 DPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGDWEVTS---ILGWDEDNNRIYFTANGDNPGERHLYRVS 313 (353)
T ss_dssp SEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SSS-EEE---EEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred cccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCceeecc---cceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence 244444 5554 5555667774 555566655533 22222222211 267888877654 44432 3566667
Q ss_pred CCCcceeecccccCcCEEEEEEeCCCCcEEEe
Q 010470 469 ISKADIVRTLKEHTAPVLSCSWSGLGKPLASA 500 (510)
Q Consensus 469 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 500 (510)
+..+..+..+....+....+.|||+|++++..
T Consensus 314 ~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 314 LDSGGEPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp TTETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred eCCCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence 76233334444333222799999999977643
No 330
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=1.3e-06 Score=85.42 Aligned_cols=202 Identities=13% Similarity=0.178 Sum_probs=134.0
Q ss_pred ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccc-eeEEEEecCCCEEEEEeCCC-----eEEEEEcCCC-
Q 010470 227 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGS-VLDLAITHDNRSVIAASSSN-----NLYVWDVNSG- 299 (510)
Q Consensus 227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~- 299 (510)
.|+| |++.+..++.|+.+|.|.+.+-. .+.+..+..+... |..+.......+|++.+.|+ .++||+++.-
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4444 57888999999999999888743 3444667777666 55444444446777776554 5899998642
Q ss_pred -----Cee--EeecC-----CCCceEEEEEecCCCCEEEEEeCCCcEEEEECC--C--C-eEeeeeeecCceeEEEEcCC
Q 010470 300 -----RVR--HTLTG-----HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH--K--G-YCVNTIIFHSNCNALAFSMD 362 (510)
Q Consensus 300 -----~~~--~~~~~-----~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~--~--~-~~~~~~~~~~~i~~i~~~~~ 362 (510)
.++ +.+.. ...++.+++++. +-..+++|-.+|.|..+.-. . | +......+..+|+.+.+..+
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 233 12222 246788899988 68889999999999988421 1 1 22223344567999999988
Q ss_pred CCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEee
Q 010470 363 GQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLR 433 (510)
Q Consensus 363 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 433 (510)
+..++.......|.+|.+....+......+++.+..|..+++....+++++ +..+.+|+.....+...+.
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 887333333357999998743334443444447899999988666455553 4578999988766666665
No 331
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.81 E-value=1.2e-05 Score=72.03 Aligned_cols=257 Identities=13% Similarity=0.129 Sum_probs=159.9
Q ss_pred CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeC----------CCeEEEEEcCCCCeeEeecCCCC------
Q 010470 247 KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS----------SNNLYVWDVNSGRVRHTLTGHTD------ 310 (510)
Q Consensus 247 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~------ 310 (510)
+.+.|+|.++++.+..+... -.-.+..+|+++.+++++. .-.|.+||..+..+...+.-...
T Consensus 17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 58999999999987776532 2334678999999987642 34799999999877765532221
Q ss_pred -ceEEEEEecCCCCEEEEEe--CCCcEEEEECCCCeEeeeeeecCceeEEEEcCC-CCEEEEecCCCcEEEEECC-CCce
Q 010470 311 -KVCAVDVSKISSRHVVSAA--YDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMD-GQTIFSGHIDGNLRLWDIQ-TGKL 385 (510)
Q Consensus 311 -~v~~i~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~-~~~~ 385 (510)
....+.++. ++++++... --.+|.|.|+..++.+..+..++.. -+.|. .+-|.+-|.||.+.-+.+. .|+.
T Consensus 95 ~~~~~~~ls~-dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~---~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 95 PYKNMFALSA-DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCW---LIYPSGNRGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp --GGGEEE-T-TSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEE---EEEEEETTEEEEEETTSCEEEEEETSTSSE
T ss_pred ccccceEEcc-CCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEE---EEEecCCCceEEEecCCceEEEEECCCCCE
Confidence 112245555 555555432 2457888888888887777665532 22232 2457777889999988887 4554
Q ss_pred eeee----cccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceee--eEeec------CCCeeecCceeEEEcCCCC
Q 010470 386 LSEV----AAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVC--GSLRA------TGNRVASNWSRSCISPDES 453 (510)
Q Consensus 386 ~~~~----~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~------~~~~~~~~~~~~~~s~~~~ 453 (510)
.... .......+..-.++..+..++..+.+|.|+-.|+...... ..+.. ....-...|..+++++..+
T Consensus 171 ~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~ 250 (342)
T PF06433_consen 171 AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASG 250 (342)
T ss_dssp EEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTT
T ss_pred eEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccC
Confidence 4222 1111112223344555666666788999999888764432 22221 1234445667788988666
Q ss_pred EEEEEcC---CC-------eEEEEeCCCcceeecccccCcCEEEEEEeCCCC-cEEEe-eCCCeEEEcC
Q 010470 454 YVAAGSA---DG-------SVYIWSISKADIVRTLKEHTAPVLSCSWSGLGK-PLASA-DKNGVVCVWT 510 (510)
Q Consensus 454 ~l~~~~~---dg-------~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~~dg~i~iwd 510 (510)
.|++--. +| .|.+||+.+++.+..+.. ..++.++..+.+.+ .|++. ..++.+.+||
T Consensus 251 rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 251 RLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp EEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred eEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 6555322 22 488889999999999874 24577999998876 55544 4578999986
No 332
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.80 E-value=9.6e-09 Score=62.00 Aligned_cols=39 Identities=36% Similarity=0.659 Sum_probs=36.5
Q ss_pred cceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 472 ADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 472 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
++++.++.+|.++|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467788999999999999999999999999999999997
No 333
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=3.4e-05 Score=73.41 Aligned_cols=261 Identities=15% Similarity=0.153 Sum_probs=170.4
Q ss_pred ceEEEEEecCCCEEEEee-CCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCCCCeeEe
Q 010470 227 GCASILFEYNSARLISGG-QDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRVRHT 304 (510)
Q Consensus 227 ~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~ 304 (510)
....+.+.++|..+.... ....+...+...................++.++.+..+++.. .++.|.+.|..+.+....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 566677888885544333 222455555442222221111114456788888888655555 558999999887777766
Q ss_pred ecCCCCceEEEEEecCCCCEEEEEeC---CCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEec-CCCcEEEEEC
Q 010470 305 LTGHTDKVCAVDVSKISSRHVVSAAY---DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGH-IDGNLRLWDI 380 (510)
Q Consensus 305 ~~~~~~~v~~i~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~ 380 (510)
..... ....+++.| ++..++.+.. ++.+.+.|..+++.+...........++++|+|..+++.. .++.|.++|.
T Consensus 112 ~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~ 189 (381)
T COG3391 112 IPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDT 189 (381)
T ss_pred eeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeC
Confidence 65332 567788998 5544444443 7999999999999888866555568999999999766554 7889999997
Q ss_pred CCCceeeeec----ccccccEEEEEEcCCCCEEEEEecC---CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCC
Q 010470 381 QTGKLLSEVA----AHSLAAVTSISLSRSGNIILTSGRD---NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES 453 (510)
Q Consensus 381 ~~~~~~~~~~----~~~~~~i~~i~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 453 (510)
....... -. .........+.++|+|..+++.... +.+...|..++............ ....+.++|+|.
T Consensus 190 ~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~---~~~~v~~~p~g~ 265 (381)
T COG3391 190 SGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG---APRGVAVDPAGK 265 (381)
T ss_pred CCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC---CCCceeECCCCC
Confidence 6655443 11 1111456779999999977766554 48999999887776552221111 112278899999
Q ss_pred EEEEEcC-CCeEEEEeCCCcceeecccccC---cCEEEEEEeCC
Q 010470 454 YVAAGSA-DGSVYIWSISKADIVRTLKEHT---APVLSCSWSGL 493 (510)
Q Consensus 454 ~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~~~~ 493 (510)
++.+... .+.+.+.|..+......+.... ..+..+++.+.
T Consensus 266 ~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 266 AAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred EEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 9888744 4889999988877766554322 23445555443
No 334
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.72 E-value=8.1e-06 Score=78.05 Aligned_cols=228 Identities=13% Similarity=0.112 Sum_probs=120.5
Q ss_pred eeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcC
Q 010470 218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVN 297 (510)
Q Consensus 218 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 297 (510)
...+....-.+..+.++|+|+++++++ ||...||.....+.. ..+.-...+|.+.++ +++-..++.|.|+.--
T Consensus 25 ~k~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k-----~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 25 VKELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNK-----AFGSGLSFVWSSRNR-YAVLESSSTIKIYKNF 97 (443)
T ss_dssp -EEEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEE-----EEEE-SEEEE-TSSE-EEEE-TTS-EEEEETT
T ss_pred eccCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccc-----ccCceeEEEEecCcc-EEEEECCCeEEEEEcC
Confidence 333444555688999999999998854 788888874333221 134456789998554 6666668889997432
Q ss_pred CCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEE
Q 010470 298 SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRL 377 (510)
Q Consensus 298 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i 377 (510)
+......+... ..+..+- + |.+|...+ ++.|.+||+.+++.+..+.... |..+.|+++|.+++..+.+ .+++
T Consensus 98 ~~~~~k~i~~~-~~~~~If--~--G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~i 169 (443)
T PF04053_consen 98 KNEVVKSIKLP-FSVEKIF--G--GNLLGVKS-SDFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYI 169 (443)
T ss_dssp EE-TT-----S-S-EEEEE-----SSSEEEEE-TTEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEE
T ss_pred ccccceEEcCC-cccceEE--c--CcEEEEEC-CCCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEE
Confidence 33332233311 2233332 2 66666666 4589999999999999988664 8999999999999988765 7888
Q ss_pred EECCCC-----------ceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeE
Q 010470 378 WDIQTG-----------KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRS 446 (510)
Q Consensus 378 ~d~~~~-----------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 446 (510)
++.... .....+..-. ..|.+..|..+ .++-.+.. .++. +.+|+. .++..-..+.. -+
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~E~~-~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~-~~i~~ld~~~y----ll 238 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIHEIS-ERIKSGCWVED--CFIYTTSN-HLKY--LVNGET-GIIAHLDKPLY----LL 238 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEETT--EEEEE-TT-EEEE--EETTEE-EEEEE-SS--E----EE
T ss_pred EEecchhcccccccCchhceEEEEEec-ceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCc-ceEEEcCCceE----EE
Confidence 775332 0222222212 67888888765 44444444 5554 333332 22222222222 25
Q ss_pred EEcCCCCEEEEEcCCCeEEEEeCCC
Q 010470 447 CISPDESYVAAGSADGSVYIWSISK 471 (510)
Q Consensus 447 ~~s~~~~~l~~~~~dg~i~iwd~~~ 471 (510)
.+.|..+.++....|+.|..+.++.
T Consensus 239 gy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 239 GYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEETTTTEEEEE-TT--EEEEE--H
T ss_pred EEEccCCEEEEEECCCCEEEEEECH
Confidence 6677777888888888888887654
No 335
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.71 E-value=4.1e-05 Score=68.81 Aligned_cols=243 Identities=13% Similarity=0.178 Sum_probs=149.2
Q ss_pred EEEEEecCCCEEEEeeC----------CCeEEEEeCCCCcceeccccc-------ccceeEEEEecCCCEEEEEeC--CC
Q 010470 229 ASILFEYNSARLISGGQ----------DKSIKLWDTNTGSLSSTLYGC-------LGSVLDLAITHDNRSVIAASS--SN 289 (510)
Q Consensus 229 ~~~~~s~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~ 289 (510)
-.+.++|+|+.+++++. .-.|.+||..+..+...+.-. ......+.++.|++++++... -.
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 34678999999887542 346999999988765533211 122345688899998888753 45
Q ss_pred eEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECC-CCeEeeeee--ec---Cc-eeEEEEcCC
Q 010470 290 NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH-KGYCVNTII--FH---SN-CNALAFSMD 362 (510)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~--~~---~~-i~~i~~~~~ 362 (510)
.|.|.|+..++.+..+.... |.-..|..+.-|.+.+.||.+.-..+. .|+...+.. +. .+ +..-.+...
T Consensus 119 SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~ 194 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEIDTPG----CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD 194 (342)
T ss_dssp EEEEEETTTTEEEEEEEGTS----EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred eEEEEECCCCceeeeecCCC----EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence 79999999888887776322 222234445668888889999999887 555543221 11 11 233344445
Q ss_pred CCEEEEecCCCcEEEEECCCCcee--eeeccc---------ccccEEEEEEcCCCCEEEEEecC--------C--cEEEE
Q 010470 363 GQTIFSGHIDGNLRLWDIQTGKLL--SEVAAH---------SLAAVTSISLSRSGNIILTSGRD--------N--LHNLF 421 (510)
Q Consensus 363 ~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~---------~~~~i~~i~~~~~~~~l~~~~~d--------~--~i~i~ 421 (510)
+..++.-+.+|.|+-.|+...... ..+... ..+.-.-+++++..+.|++--.. + .|.+|
T Consensus 195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~ 274 (342)
T PF06433_consen 195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY 274 (342)
T ss_dssp TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence 555666778899999998655422 122110 01334457787766655553221 1 58888
Q ss_pred EcCCceeeeEeecCCCeeecCceeEEEcCCCC-EEEE-EcCCCeEEEEeCCCcceeecccc
Q 010470 422 DIRSLEVCGSLRATGNRVASNWSRSCISPDES-YVAA-GSADGSVYIWSISKADIVRTLKE 480 (510)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~-~~~dg~i~iwd~~~~~~~~~~~~ 480 (510)
|+.+++.+..+..... + .++.++.+.+ +|++ ...++.+.+||..+|+.+.++..
T Consensus 275 D~~t~krv~Ri~l~~~-~----~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 275 DLKTHKRVARIPLEHP-I----DSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp ETTTTEEEEEEEEEEE-E----SEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ECCCCeEEEEEeCCCc-c----ceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 9999999888875432 2 2377888766 5544 45689999999999999888764
No 336
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.71 E-value=1.2e-05 Score=70.31 Aligned_cols=203 Identities=9% Similarity=0.123 Sum_probs=120.3
Q ss_pred eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec--CceeEEEEcCCCCEEEEecCCCcEEEEECC
Q 010470 304 TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH--SNCNALAFSMDGQTIFSGHIDGNLRLWDIQ 381 (510)
Q Consensus 304 ~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~ 381 (510)
.+.+-...+.+++|+|..+.++++....+.|..++. +|+.++.+... ...-.|++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 455666679999999966777888888899999997 58888887665 468899998888887777778999999884
Q ss_pred CCc------eeeeec--c--cccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC---ceeeeEee---cC-CCeeecCce
Q 010470 382 TGK------LLSEVA--A--HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS---LEVCGSLR---AT-GNRVASNWS 444 (510)
Q Consensus 382 ~~~------~~~~~~--~--~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~---~~-~~~~~~~~~ 444 (510)
... ....+. . .....+-.++|+|.++.|+++....-..+|.+.. ........ .. .......++
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 111222 1 2335689999999988888877776666776653 11111111 01 122233466
Q ss_pred eEEEcCC-CCEEEEEcCCCeEEEEeCCCcceeecccccC---------cCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 445 RSCISPD-ESYVAAGSADGSVYIWSISKADIVRTLKEHT---------APVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 445 ~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
.++++|. |.+++.+..+..|.++| .+|+++..+.-.. ...-+|+|.++|++.+++ .-+.+++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 7888885 56677777788999999 6677665443211 246899999999755554 55566655
No 337
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.69 E-value=6.5e-06 Score=83.78 Aligned_cols=196 Identities=16% Similarity=0.127 Sum_probs=131.7
Q ss_pred CCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEEC----CCCc
Q 010470 309 TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDI----QTGK 384 (510)
Q Consensus 309 ~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~----~~~~ 384 (510)
.+.|.++.|.. +.+.++.+..+|.|.+-|..+....-.-.....|.+++|+||+..++..+..+++.+-+- -..+
T Consensus 68 d~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLA-DTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEec-ccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 46899999987 778888888899999998877655444455677999999999999998888777766432 1111
Q ss_pred ee-------------------eeecccc--------------------cccEEEEEEcCCCCEEEEEe----cC-CcEEE
Q 010470 385 LL-------------------SEVAAHS--------------------LAAVTSISLSRSGNIILTSG----RD-NLHNL 420 (510)
Q Consensus 385 ~~-------------------~~~~~~~--------------------~~~i~~i~~~~~~~~l~~~~----~d-~~i~i 420 (510)
++ ..|.+.. ...-++|+|--||.++++.. .+ ..|+|
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 11 1121110 01234589999999998843 23 68999
Q ss_pred EEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEE---cCCCeEEEEeCCC---cceeecccccCcCEEEEEEeCCC
Q 010470 421 FDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAG---SADGSVYIWSISK---ADIVRTLKEHTAPVLSCSWSGLG 494 (510)
Q Consensus 421 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~---~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~ 494 (510)
||-. +.. .....+....-.+++|-|.|..+++- ++|+.|.+|.-+. |+..-.++.....|..++|+.++
T Consensus 227 ~drE-g~L----ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~s 301 (1265)
T KOG1920|consen 227 YDRE-GAL----NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNS 301 (1265)
T ss_pred eccc-chh----hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCC
Confidence 9976 322 22222222223448999999999875 3466799998432 33333344445559999999999
Q ss_pred CcEEE---eeCCCeEEEcC
Q 010470 495 KPLAS---ADKNGVVCVWT 510 (510)
Q Consensus 495 ~~l~s---~~~dg~i~iwd 510 (510)
..|++ +.....|++|.
T Consensus 302 diLAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 302 DILAVVTSNLENSLVQLWT 320 (1265)
T ss_pred CceeeeecccccceEEEEE
Confidence 98887 44455599983
No 338
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.69 E-value=7.1e-05 Score=74.12 Aligned_cols=268 Identities=15% Similarity=0.183 Sum_probs=162.0
Q ss_pred CCEEEEeeCCCeEEEEeCCCCcceecccccc-ccee----------EEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee
Q 010470 237 SARLISGGQDKSIKLWDTNTGSLSSTLYGCL-GSVL----------DLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL 305 (510)
Q Consensus 237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~----------~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 305 (510)
+..++.++.++.|.-+|..+|+.+..+.... ..+. .+++ .+..++.++.|+.+..+|..+|+.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4577777888899999999998876654211 1111 1222 2456788889999999999999988776
Q ss_pred cCCC----CceEE-EEEecCCCCEEEEEe------CCCcEEEEECCCCeEeeeeeecCc---------------------
Q 010470 306 TGHT----DKVCA-VDVSKISSRHVVSAA------YDRTLKVWDLHKGYCVNTIIFHSN--------------------- 353 (510)
Q Consensus 306 ~~~~----~~v~~-i~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~--------------------- 353 (510)
.... ..+.+ ..+. ++ .++.+. .+|.|..+|..+|+.+..+.....
T Consensus 147 ~~~~~~~~~~~tssP~v~--~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVV--KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred ccccccccccccCCcEEE--CC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 5311 11111 1111 33 445443 268999999999988776533210
Q ss_pred ------------eeEEEEcCCCCEEEEecCC-----C-----------cEEEEECCCCceeeeeccccc--------ccE
Q 010470 354 ------------CNALAFSMDGQTIFSGHID-----G-----------NLRLWDIQTGKLLSEVAAHSL--------AAV 397 (510)
Q Consensus 354 ------------i~~i~~~~~~~~l~~~~~d-----g-----------~i~i~d~~~~~~~~~~~~~~~--------~~i 397 (510)
-..+++.|...+++.+..+ + .|.-.|+++|+....+...+. ...
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p 303 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM 303 (527)
T ss_pred CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence 1234666766677765522 2 577789999998877764321 122
Q ss_pred EEEEEcCCCC---EEEEEecCCcEEEEEcCCceeeeE--------ee---c-C-------------------------CC
Q 010470 398 TSISLSRSGN---IILTSGRDNLHNLFDIRSLEVCGS--------LR---A-T-------------------------GN 437 (510)
Q Consensus 398 ~~i~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~--------~~---~-~-------------------------~~ 437 (510)
.-+.+..+|+ .++.+..+|.++++|..+++.+.. +. . . ..
T Consensus 304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~ 383 (527)
T TIGR03075 304 ILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGF 383 (527)
T ss_pred EEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCC
Confidence 2333445666 788999999999999999887521 10 0 0 00
Q ss_pred eeecCceeEEEcCCCCEEEEEcCC---------------------------------CeEEEEeCCCcceeecccccCcC
Q 010470 438 RVASNWSRSCISPDESYVAAGSAD---------------------------------GSVYIWSISKADIVRTLKEHTAP 484 (510)
Q Consensus 438 ~~~~~~~~~~~s~~~~~l~~~~~d---------------------------------g~i~iwd~~~~~~~~~~~~~~~~ 484 (510)
.-...|..++++|+..+++....+ |.|.-+|+.+++...........
T Consensus 384 ~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~ 463 (527)
T TIGR03075 384 LGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPL 463 (527)
T ss_pred cCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCC
Confidence 001124446777776666554333 45777788888777665432211
Q ss_pred EEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 485 VLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 485 v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
..+. ..-.+..++.++.||.++.+|
T Consensus 464 ~~~~-l~t~g~lvf~g~~~G~l~a~D 488 (527)
T TIGR03075 464 WGGV-LATAGDLVFYGTLEGYFKAFD 488 (527)
T ss_pred CCcc-eEECCcEEEEECCCCeEEEEE
Confidence 1121 112445666777899988775
No 339
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.68 E-value=5.6e-05 Score=71.75 Aligned_cols=113 Identities=14% Similarity=0.182 Sum_probs=77.5
Q ss_pred ccEEEEEEcCC-CCEEEEE----ecCCc----EEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEE
Q 010470 395 AAVTSISLSRS-GNIILTS----GRDNL----HNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVY 465 (510)
Q Consensus 395 ~~i~~i~~~~~-~~~l~~~----~~d~~----i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~ 465 (510)
..+.++.||-. .+.+.+. +.+|. ..+|++...+ ++......-+..+.+.+++++|+...++.|+.||+|.
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~k-lqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNK-LQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSII 284 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCc-eeEEEEEEEecCCcceEEecCcccceEEEEecCCeEE
Confidence 34566777763 3333332 23332 3456665433 2233333334555667789999999999999999999
Q ss_pred EEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 466 IWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 466 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+||...+... +....-.++.++|+|+|..+++|+..|.+.+||
T Consensus 285 LyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 285 LYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFD 327 (545)
T ss_pred EEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEE
Confidence 9998766333 223445678999999999999999999999997
No 340
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.66 E-value=1.7e-06 Score=84.45 Aligned_cols=109 Identities=9% Similarity=0.111 Sum_probs=85.2
Q ss_pred EEEEEecCCCEEEEeeC----CCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEe
Q 010470 229 ASILFEYNSARLISGGQ----DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT 304 (510)
Q Consensus 229 ~~~~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 304 (510)
+-..|+|...++++++- .|+|.||- ++|.+..... ..-.++++||+|..-.|+.|-.-|.+.+|...+.+.-..
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence 34578888888877653 58898883 5565433221 223456799999998889998999999999877666666
Q ss_pred ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 010470 305 LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH 340 (510)
Q Consensus 305 ~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~ 340 (510)
...|..+|..+.|+| +++.++++..-|.+.+|...
T Consensus 97 ~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence 667999999999999 89999999999999999764
No 341
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.66 E-value=5.9e-06 Score=79.33 Aligned_cols=116 Identities=18% Similarity=0.218 Sum_probs=91.0
Q ss_pred ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc-ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCee-
Q 010470 225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY-GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR- 302 (510)
Q Consensus 225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~- 302 (510)
...|.--+++..+++++.|++-|.+++|+-..+.....-. +..+.+..++.+++..++++|+..|.|.++-++.+.+.
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 3445566777889999999999999999998776543322 34556677788989999999999999999988764321
Q ss_pred ----Eee-cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 010470 303 ----HTL-TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK 341 (510)
Q Consensus 303 ----~~~-~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~ 341 (510)
... ..|...|+++.|++ ++..+++|...|.|..-.+.+
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEech
Confidence 111 23788999999999 899999999999999988876
No 342
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.63 E-value=3.1e-06 Score=80.56 Aligned_cols=201 Identities=22% Similarity=0.211 Sum_probs=123.0
Q ss_pred eEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCC---CcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEE
Q 010470 290 NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD---RTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTI 366 (510)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l 366 (510)
.+.+-|.. +.....+......+..-.|+|......+..-.. ..+.++|+.++...........-....|+|||+.|
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l 252 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKL 252 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEE
Confidence 34444433 555555655566677788888444433332222 35999999998877777766666778999999987
Q ss_pred EE-ecCCCc--EEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC-C--cEEEEEcCCceeeeEeecCCCeee
Q 010470 367 FS-GHIDGN--LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD-N--LHNLFDIRSLEVCGSLRATGNRVA 440 (510)
Q Consensus 367 ~~-~~~dg~--i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~~~~ 440 (510)
+. ...||. |+++|+..+.... +.... +.-..-.|+|+|+.++..+.. | .|.++++................
T Consensus 253 ~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~-gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~- 329 (425)
T COG0823 253 AFSSSRDGSPDIYLMDLDGKNLPR-LTNGF-GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS- 329 (425)
T ss_pred EEEECCCCCccEEEEcCCCCccee-cccCC-ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc-
Confidence 74 445554 7777887666333 43332 444477899999988766543 4 56667776655432222222221
Q ss_pred cCceeEEEcCCCCEEEEEcCC-Ce--EEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEE
Q 010470 441 SNWSRSCISPDESYVAAGSAD-GS--VYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLAS 499 (510)
Q Consensus 441 ~~~~~~~~s~~~~~l~~~~~d-g~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 499 (510)
...++|||++|+..+.. |. |.+.|+.++..+..+. +......-+|.|+|..++.
T Consensus 330 ----~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 330 ----NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMF 386 (425)
T ss_pred ----CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEE
Confidence 25789999999877643 44 6777776655333332 2222334456666665544
No 343
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.62 E-value=5.7e-05 Score=68.92 Aligned_cols=228 Identities=18% Similarity=0.249 Sum_probs=134.6
Q ss_pred cCCCEEEEeeCCCeEEEEeCC-CCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEe---------
Q 010470 235 YNSARLISGGQDKSIKLWDTN-TGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT--------- 304 (510)
Q Consensus 235 ~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--------- 304 (510)
..++.|+.|+.+| +.+++.. ........ +..+|..+...|+-+.+++-+. +.++++++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLsd-~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLSD-GQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEcC-CccEEEEchhhcccccccccccccc
Confidence 4578999999998 9999983 22222222 2334999999998887777654 9999999876443321
Q ss_pred -----ecCCCCceEEEE-EecCCCCEEEEEeCCCcEEEEECCCC-----eEeeeeeecCceeEEEEcCCCCEEEEecCCC
Q 010470 305 -----LTGHTDKVCAVD-VSKISSRHVVSAAYDRTLKVWDLHKG-----YCVNTIIFHSNCNALAFSMDGQTIFSGHIDG 373 (510)
Q Consensus 305 -----~~~~~~~v~~i~-~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg 373 (510)
.-.....+..++ .....+...+.......|.+|..... ...+.+..+..+.+++|. ++.+++|..+
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~- 157 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK- 157 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-
Confidence 011223444444 11223334444444668888877642 466777788889999998 6777878755
Q ss_pred cEEEEECCCCceeeeecccc-----------cccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeee--EeecCCCeee
Q 010470 374 NLRLWDIQTGKLLSEVAAHS-----------LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCG--SLRATGNRVA 440 (510)
Q Consensus 374 ~i~i~d~~~~~~~~~~~~~~-----------~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~ 440 (510)
...+.|+.++.....+.... ..++..+.. +++.+|++. +..-.+.|. .|+... .+.-...+.
T Consensus 158 ~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~~~p~- 232 (275)
T PF00780_consen 158 GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWSSAPQ- 232 (275)
T ss_pred ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccEEEcCCchh-
Confidence 48888998776544332211 123333333 344555543 333333343 333222 222221111
Q ss_pred cCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeeccccc
Q 010470 441 SNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEH 481 (510)
Q Consensus 441 ~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 481 (510)
.+++ ...||++.+.++ |.||++.+++++..+...
T Consensus 233 ----~~~~--~~pyli~~~~~~-iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 233 ----SVAY--SSPYLIAFSSNS-IEVRSLETGELVQTIPLP 266 (275)
T ss_pred ----EEEE--ECCEEEEECCCE-EEEEECcCCcEEEEEECC
Confidence 1333 445777777654 999999999988887643
No 344
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.57 E-value=5.7e-05 Score=66.09 Aligned_cols=199 Identities=12% Similarity=0.227 Sum_probs=113.7
Q ss_pred eeccccccceEEEEEecCCC-EEEEeeCCCeEEEEeCCCCcceeccccc-ccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470 219 HKINAHEGGCASILFEYNSA-RLISGGQDKSIKLWDTNTGSLSSTLYGC-LGSVLDLAITHDNRSVIAASSSNNLYVWDV 296 (510)
Q Consensus 219 ~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 296 (510)
+.+.+-...+++++|+|+.+ ++++....+.|..++.. |+.+..+.-. .+..-.|++..++.++++.-.++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 34556666799999999765 55666677888888874 7777766432 466788999888887777767899999998
Q ss_pred CCCC------eeEeec-----CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC---CeEeeeee---------ecCc
Q 010470 297 NSGR------VRHTLT-----GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK---GYCVNTII---------FHSN 353 (510)
Q Consensus 297 ~~~~------~~~~~~-----~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~---------~~~~ 353 (510)
.... ....+. .++..+-+++|.| .++.|+.+-...-..+|.+.. +..+.... .-..
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 4321 111221 2455689999999 445555555555555655542 11111111 1134
Q ss_pred eeEEEEcCC-CCEEEEecCCCcEEEEECCCCceeeeecccc--------cccEEEEEEcCCCCEEEEEecCCcEEEE
Q 010470 354 CNALAFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS--------LAAVTSISLSRSGNIILTSGRDNLHNLF 421 (510)
Q Consensus 354 i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~i~~i~~~~~~~~l~~~~~d~~i~i~ 421 (510)
+.+++++|. |.+++.+..+..|..+| .+|+++..+.... ....-.|+|+++|++.+++ .-+..++|
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 789999994 56666788888999999 6787766554332 1358899999999766655 45555444
No 345
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.54 E-value=7.4e-05 Score=69.74 Aligned_cols=174 Identities=18% Similarity=0.186 Sum_probs=107.5
Q ss_pred CeEEEEeCCCCcceecccc-cccceeEEE---EecC----CCEEEEEeC---------C-CeEEEEEcCCC----CeeEe
Q 010470 247 KSIKLWDTNTGSLSSTLYG-CLGSVLDLA---ITHD----NRSVIAASS---------S-NNLYVWDVNSG----RVRHT 304 (510)
Q Consensus 247 g~i~iwd~~~~~~~~~~~~-~~~~v~~~~---~~~~----~~~l~~~~~---------d-~~i~iwd~~~~----~~~~~ 304 (510)
+.|++.|..+...+.++.- ....+++++ +..+ ..++++|+. . |.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3577888777766555432 222334333 3322 467777753 2 89999999884 12221
Q ss_pred e--cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe-EeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECC
Q 010470 305 L--TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY-CVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQ 381 (510)
Q Consensus 305 ~--~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~ 381 (510)
+ ....++|++++... +. ++++. ++.|.+|++.... ....-..+.++...+....++++++|+....+.++...
T Consensus 82 i~~~~~~g~V~ai~~~~--~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFN--GR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEEESS-EEEEEEET--TE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEE
T ss_pred EEEEeecCcceEhhhhC--CE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEE
Confidence 1 23578899988763 44 44444 5899999998777 55555554544444444457799999988888877443
Q ss_pred C-Cceeeee-cccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC
Q 010470 382 T-GKLLSEV-AAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR 424 (510)
Q Consensus 382 ~-~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 424 (510)
. +..+..+ .......++++.|-++++.++++..+|.+.++...
T Consensus 158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 3 3323222 22223678899998777899999999999998875
No 346
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.54 E-value=0.0001 Score=67.03 Aligned_cols=217 Identities=12% Similarity=0.130 Sum_probs=131.5
Q ss_pred EEEecCCCEEEEEe-CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec
Q 010470 273 LAITHDNRSVIAAS-SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH 351 (510)
Q Consensus 273 ~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 351 (510)
..|.++...|+.+. ..+.|.-|+..+++.. .+. +.+.+.++.... .+..|+++. ..+.+++..++..+..+...
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d-~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALID-AGGRLIACE--HGVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeec-CCCeEEEEc--cccEEEeccCCceeEEeccc
Confidence 45667777555444 6778999998766432 222 223334444433 445555554 35667776655553333211
Q ss_pred ------CceeEEEEcCCCCEEEEecC-----------CCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEec
Q 010470 352 ------SNCNALAFSMDGQTIFSGHI-----------DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR 414 (510)
Q Consensus 352 ------~~i~~i~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 414 (510)
...+.+.+.|+|.+.+.... -|.|+.+|. .+.....+..+- ...+.|+||||++.|+.+..
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~-~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDL-TIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcE-EecCceEECCCCCEEEEEeC
Confidence 34788999999997775433 244666665 455555554433 67789999999987776655
Q ss_pred -CCcEEEEEcCC--ceeee---EeecCCCeeecCceeEEEcCCCCEEEEEcCCC-eEEEEeCCCcceeecccccCcCEEE
Q 010470 415 -DNLHNLFDIRS--LEVCG---SLRATGNRVASNWSRSCISPDESYVAAGSADG-SVYIWSISKADIVRTLKEHTAPVLS 487 (510)
Q Consensus 415 -d~~i~i~d~~~--~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~ 487 (510)
.+.|.-|++.. +.... .+.... .....-.+++..+|.+.+++..+| .|.+|+.. |+++..+..+...+++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~--~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~ 259 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDE--EPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTN 259 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccC--CCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCcc
Confidence 47888887752 11111 111110 111122377888999886655554 89999987 9998888877677888
Q ss_pred EEEeC-CCCcEEE
Q 010470 488 CSWSG-LGKPLAS 499 (510)
Q Consensus 488 ~~~~~-~~~~l~s 499 (510)
++|-- +.+.|+.
T Consensus 260 ~~FgG~~~~~L~i 272 (307)
T COG3386 260 PAFGGPDLNTLYI 272 (307)
T ss_pred ceEeCCCcCEEEE
Confidence 99863 4444433
No 347
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.53 E-value=3.7e-05 Score=72.57 Aligned_cols=263 Identities=14% Similarity=0.131 Sum_probs=138.9
Q ss_pred ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC---C----
Q 010470 227 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS---G---- 299 (510)
Q Consensus 227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---~---- 299 (510)
.|+.+.|+++..-|++|...|.|.||.+...+... .....+-..+.+.+- ...++.-.+-|+.. .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 58999999999999999999999999876443221 000001111111110 00111122223321 1
Q ss_pred --CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC---------ceeEEEEcC-----CC
Q 010470 300 --RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS---------NCNALAFSM-----DG 363 (510)
Q Consensus 300 --~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~i~~i~~~~-----~~ 363 (510)
.+...+....++|++++.+ +-.+++.|..+|.+.|.|++....+..-.... .++++.|.. |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccCchhheeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 1344455568999999996 47899999999999999999888776643222 367777752 33
Q ss_pred ---CEEEEecCCCcEEEEECCC---Cceeeeec---ccccccEEEEE-EcCC-C-------------------CEEEEEe
Q 010470 364 ---QTIFSGHIDGNLRLWDIQT---GKLLSEVA---AHSLAAVTSIS-LSRS-G-------------------NIILTSG 413 (510)
Q Consensus 364 ---~~l~~~~~dg~i~i~d~~~---~~~~~~~~---~~~~~~i~~i~-~~~~-~-------------------~~l~~~~ 413 (510)
-.+++|+..|.+.+|.+-- +.....+. ....+++..|. ++.+ | +-+++..
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 4688999999999998741 21111111 11124555444 3211 0 1244445
Q ss_pred cCCcEEEEEcCCceeeeEeecCCCeeecCceeEEE-----cCCCCEEEEEcCCCeEEEEeCCCcceeecccccC----cC
Q 010470 414 RDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCI-----SPDESYVAAGSADGSVYIWSISKADIVRTLKEHT----AP 484 (510)
Q Consensus 414 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~ 484 (510)
.+..++++.+.+.+..+... .....+. .+++ ...+..|++-..+|.|++|.+..-+.+..++.+. ..
T Consensus 233 Se~~irv~~~~~~k~~~K~~--~~~~~~~--~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~ 308 (395)
T PF08596_consen 233 SESDIRVFKPPKSKGAHKSF--DDPFLCS--SASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRR 308 (395)
T ss_dssp -SSEEEEE-TT---EEEEE---SS-EEEE--EEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHH
T ss_pred cccceEEEeCCCCcccceee--ccccccc--eEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccc
Confidence 57789999998877665554 2212211 1233 2356778888999999999999988776665422 23
Q ss_pred EEEEEEeCCCCcEEEeeCC
Q 010470 485 VLSCSWSGLGKPLASADKN 503 (510)
Q Consensus 485 v~~~~~~~~~~~l~s~~~d 503 (510)
+...+++++|..++-.|..
T Consensus 309 ~~~ssis~~Gdi~~~~gps 327 (395)
T PF08596_consen 309 LSSSSISRNGDIFYWTGPS 327 (395)
T ss_dssp HTT-EE-TTS-EEEE-SSS
T ss_pred ccccEECCCCCEEEEeCcc
Confidence 4456778888876655443
No 348
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=1.9e-06 Score=84.09 Aligned_cols=109 Identities=13% Similarity=0.190 Sum_probs=85.7
Q ss_pred EEEEEecCCCCEEEEEe----CCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeee
Q 010470 313 CAVDVSKISSRHVVSAA----YDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSE 388 (510)
Q Consensus 313 ~~i~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 388 (510)
+-..|+| ...++++++ ..|+|.||- .+|.+...+..+-.++++||+|..-.|+.|-.-|.+.+|...+.+.-..
T Consensus 19 ti~SWHP-sePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 19 TISSWHP-SEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred cccccCC-CCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence 3456777 556666554 358888884 4677666666666688999999999999999999999999766554444
Q ss_pred ecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC
Q 010470 389 VAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR 424 (510)
Q Consensus 389 ~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 424 (510)
...|. .+|..+.|||+|..++++..-|.+.+|...
T Consensus 97 ~~th~-a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHP-APIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccCCC-CCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 44444 899999999999999999999999999765
No 349
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.53 E-value=1.9e-05 Score=75.27 Aligned_cols=204 Identities=18% Similarity=0.172 Sum_probs=123.9
Q ss_pred EEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe---CC-CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCE
Q 010470 249 IKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS---SS-NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRH 324 (510)
Q Consensus 249 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d-~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 324 (510)
+.+-|.+ +.....+......+..-.|+|++..++..+ .. ..++++++.+++...... ..+.-....|+|++..+
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l 252 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKL 252 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEE
Confidence 4444444 444445555556777789999998766553 22 469999999887554444 23334456799955556
Q ss_pred EEEEeCCCc--EEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEec-CCC--cEEEEECCCCceeeeecccccccEEE
Q 010470 325 VVSAAYDRT--LKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGH-IDG--NLRLWDIQTGKLLSEVAAHSLAAVTS 399 (510)
Q Consensus 325 l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~i~~ 399 (510)
+++...||. |.++|+.++...+.....+.-..-.|+|||+.++..+ ..| .|.++|...+.. ..+.... ..-..
T Consensus 253 ~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~-~~~~~ 330 (425)
T COG0823 253 AFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSG-GGNSN 330 (425)
T ss_pred EEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccC-CCCcC
Confidence 666666765 5666877666444222223334678899999888654 344 477777755544 3443332 22337
Q ss_pred EEEcCCCCEEEEEecC-Cc--EEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC
Q 010470 400 ISLSRSGNIILTSGRD-NL--HNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD 461 (510)
Q Consensus 400 i~~~~~~~~l~~~~~d-~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 461 (510)
-.|+|+|++|+..+.. |. |.++|+.++.....+........ ..+.++|..++..+..
T Consensus 331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~-----ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 331 PVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNES-----PSWAPNGRMIMFSSGQ 390 (425)
T ss_pred ccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCC-----CCcCCCCceEEEeccC
Confidence 8899999999887743 43 66667665553333332222111 4578888887765543
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.51 E-value=9.6e-05 Score=70.82 Aligned_cols=218 Identities=14% Similarity=0.172 Sum_probs=111.4
Q ss_pred cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEe
Q 010470 266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV 345 (510)
Q Consensus 266 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 345 (510)
....+..+.++|+|+++++ +.+|.-.||.....+... .+.-..+.|.+ .+.+++-...+.|.++.--+....
T Consensus 31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~--~n~yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-----FGSGLSFVWSS--RNRYAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-----EEE-SEEEE-T--SSEEEEE-TTS-EEEEETTEE-TT
T ss_pred CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-----cCceeEEEEec--CccEEEEECCCeEEEEEcCccccc
Confidence 3445788999999998888 566778888743333222 13344577876 445666666889999743333333
Q ss_pred eeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC
Q 010470 346 NTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS 425 (510)
Q Consensus 346 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~ 425 (510)
..+..+..+..+-. |..|...+.+ .|.+||..+++.+..+... +|..+.|+++|.+++..+.+ .+.|++...
T Consensus 103 k~i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 103 KSIKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS---AVKYVIWSDDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp -----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred eEEcCCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC---CCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence 34444444444433 7777766544 8999999999999998864 48999999999999998765 566665432
Q ss_pred ce-----------eeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCC
Q 010470 426 LE-----------VCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLG 494 (510)
Q Consensus 426 ~~-----------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 494 (510)
.. ....+...... +.+.+|..+ .++..+.+ .++.+ .+|+. .++..-..++.=+.+.|..
T Consensus 175 ~~~~~~~~~g~e~~f~~~~E~~~~----IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge~-~~i~~ld~~~yllgy~~~~ 244 (443)
T PF04053_consen 175 EAVAAIPEEGVEDAFELIHEISER----IKSGCWVED--CFIYTTSN-HLKYL--VNGET-GIIAHLDKPLYLLGYLPKE 244 (443)
T ss_dssp HHHHHBTTTB-GGGEEEEEEE-S------SEEEEETT--EEEEE-TT-EEEEE--ETTEE-EEEEE-SS--EEEEEETTT
T ss_pred hhcccccccCchhceEEEEEecce----eEEEEEEcC--EEEEEcCC-eEEEE--EcCCc-ceEEEcCCceEEEEEEccC
Confidence 20 11111110111 222445444 33333323 45442 22221 1222223466777788877
Q ss_pred CcEEEeeCCCeEEEc
Q 010470 495 KPLASADKNGVVCVW 509 (510)
Q Consensus 495 ~~l~s~~~dg~i~iw 509 (510)
+.++..+.|+.|..+
T Consensus 245 ~~ly~~Dr~~~v~~~ 259 (443)
T PF04053_consen 245 NRLYLIDRDGNVISY 259 (443)
T ss_dssp TEEEEE-TT--EEEE
T ss_pred CEEEEEECCCCEEEE
Confidence 788888888887654
No 351
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.45 E-value=0.00036 Score=69.22 Aligned_cols=238 Identities=11% Similarity=0.106 Sum_probs=144.4
Q ss_pred CCEEEEeeCCCeEEEEeCCCCcceeccccc--c--cceeEEEEecCCCEEEEEeC------CCeEEEEEcCCCCeeEeec
Q 010470 237 SARLISGGQDKSIKLWDTNTGSLSSTLYGC--L--GSVLDLAITHDNRSVIAASS------SNNLYVWDVNSGRVRHTLT 306 (510)
Q Consensus 237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~--~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~ 306 (510)
+..++.++.|+.+.-.|..+|+.+...... . ..+++--.-.++ .+++++. +|.|..+|..+|+.+..+.
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 356778888999999999999987655421 1 111111111134 4555442 6899999999999877654
Q ss_pred CCCC-------------------------------ceE-EEEEecCCCCEEEEEeC-----CC-----------cEEEEE
Q 010470 307 GHTD-------------------------------KVC-AVDVSKISSRHVVSAAY-----DR-----------TLKVWD 338 (510)
Q Consensus 307 ~~~~-------------------------------~v~-~i~~~~~~~~~l~s~~~-----dg-----------~i~iwd 338 (510)
.-.. .++ .+++.| ..++++.+.. ++ +|.-.|
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 2111 111 234544 3445554441 12 678889
Q ss_pred CCCCeEeeeeeec-C---------ceeEEEEcCCCC---EEEEecCCCcEEEEECCCCceeee--------e----cccc
Q 010470 339 LHKGYCVNTIIFH-S---------NCNALAFSMDGQ---TIFSGHIDGNLRLWDIQTGKLLSE--------V----AAHS 393 (510)
Q Consensus 339 ~~~~~~~~~~~~~-~---------~i~~i~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~--------~----~~~~ 393 (510)
+++|+....+... . ...-+.+..+|+ .++.+..+|.++++|-++|+++.. + ....
T Consensus 278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~ 357 (527)
T TIGR03075 278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKT 357 (527)
T ss_pred cccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCC
Confidence 9999988777542 1 122333334676 777899999999999999987621 1 0000
Q ss_pred ccc----------------------------EEEEEEcCCCCEEEEEecC------------------------------
Q 010470 394 LAA----------------------------VTSISLSRSGNIILTSGRD------------------------------ 415 (510)
Q Consensus 394 ~~~----------------------------i~~i~~~~~~~~l~~~~~d------------------------------ 415 (510)
..+ -..++++|+..++++...+
T Consensus 358 g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~ 437 (527)
T TIGR03075 358 GRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPD 437 (527)
T ss_pred CCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCC
Confidence 000 0125666766665544333
Q ss_pred ---CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeeccccc
Q 010470 416 ---NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEH 481 (510)
Q Consensus 416 ---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 481 (510)
|.+.-+|+.+++..-........... . +.-.|.+++.++.+|.++.+|..+|+.+..++..
T Consensus 438 ~~~g~l~AiD~~tGk~~W~~~~~~p~~~~----~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 438 DHMGSLIAWDPITGKIVWEHKEDFPLWGG----V-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCceeEEEEeCCCCceeeEecCCCCCCCc----c-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 34666777777776655433222111 1 2225567778888999999999999999887653
No 352
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.43 E-value=2e-05 Score=74.64 Aligned_cols=113 Identities=15% Similarity=0.240 Sum_probs=80.2
Q ss_pred eeEEEEecC-CCEEEEE----eCCCe----EEEEEcCCCCeeEe---ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEE
Q 010470 270 VLDLAITHD-NRSVIAA----SSSNN----LYVWDVNSGRVRHT---LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 337 (510)
Q Consensus 270 v~~~~~~~~-~~~l~~~----~~d~~----i~iwd~~~~~~~~~---~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iw 337 (510)
..++.|+.. +..+.+. +.+|. -.+|++..++.... --.....|.+.+++| +...++.|+.||+|.+|
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILY 286 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEEE
Confidence 356667653 3344443 23342 35677665543221 123678899999999 88899999999999999
Q ss_pred ECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCc
Q 010470 338 DLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK 384 (510)
Q Consensus 338 d~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~ 384 (510)
|...+..... ...-.++.++|+|+|..+++|+..|.+.+||+.-..
T Consensus 287 D~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 287 DTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 9977643322 334458899999999999999999999999986443
No 353
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.43 E-value=7e-08 Score=90.93 Aligned_cols=199 Identities=16% Similarity=0.246 Sum_probs=131.5
Q ss_pred cceeEEEEecCC--CEEEEEeCCCeEEEEEcCCCCe--eEeecCCCCceEEEEEecCCCCEEEEEe----CCCcEEEEEC
Q 010470 268 GSVLDLAITHDN--RSVIAASSSNNLYVWDVNSGRV--RHTLTGHTDKVCAVDVSKISSRHVVSAA----YDRTLKVWDL 339 (510)
Q Consensus 268 ~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~l~s~~----~dg~i~iwd~ 339 (510)
..+.|+++.-+. ..+++|..+|.|.+-.+....- -....+|..+.++++|++.+.+.|+.|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 345556554333 4677888899999988765432 2344678889999999998888888774 3678999999
Q ss_pred CCC--eEeeeeee----cCceeEEEEcCCCCEEEEecCCCcEEEEECCCC-ceeeeecccccccEEEEEEcC-CCCEEEE
Q 010470 340 HKG--YCVNTIIF----HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTG-KLLSEVAAHSLAAVTSISLSR-SGNIILT 411 (510)
Q Consensus 340 ~~~--~~~~~~~~----~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~i~~i~~~~-~~~~l~~ 411 (510)
.++ .+...... ....+++||..+.+.+.+|.....+.++|++.. .....+.. ..+..+.++| .++|+++
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT---k~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT---KYVQGITVDPFSPNYFCS 213 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh---hhcccceecCCCCCceec
Confidence 877 22222221 234678999988999999999999999999833 22222222 3567788888 6777776
Q ss_pred EecCCcEEEEE-cCCce-eeeEeecCCCeeecCceeEEEcCC--CCEEEEEcCCCeEEEEeCC
Q 010470 412 SGRDNLHNLFD-IRSLE-VCGSLRATGNRVASNWSRSCISPD--ESYVAAGSADGSVYIWSIS 470 (510)
Q Consensus 412 ~~~d~~i~i~d-~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~~~~dg~i~iwd~~ 470 (510)
.. ||.|.+|| .++.+ ++..+....+........++|+|. |...+..-..++|+.|++.
T Consensus 214 ~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 214 NS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 65 99999999 44432 222222333332233455888884 3333334445789999875
No 354
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.40 E-value=0.0006 Score=66.32 Aligned_cols=241 Identities=11% Similarity=0.125 Sum_probs=127.1
Q ss_pred ceEEEEEecCCCEEEEe-eCCC----eEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCC-----------e
Q 010470 227 GCASILFEYNSARLISG-GQDK----SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSN-----------N 290 (510)
Q Consensus 227 ~v~~~~~s~~~~~l~s~-~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----------~ 290 (510)
.+....+||+|+++|.+ +..| .|+++|+.+|+.+....... ....+.|.++++.|+....+. .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 34467899999998755 3333 59999999997754321111 122399999998887765332 4
Q ss_pred EEEEEcCCCCe--eEeecCCCCc--eEEEEEecCCCCEEEE-EeC--C-CcEEEEECCCC----eEeeeeee-cCceeEE
Q 010470 291 LYVWDVNSGRV--RHTLTGHTDK--VCAVDVSKISSRHVVS-AAY--D-RTLKVWDLHKG----YCVNTIIF-HSNCNAL 357 (510)
Q Consensus 291 i~iwd~~~~~~--~~~~~~~~~~--v~~i~~~~~~~~~l~s-~~~--d-g~i~iwd~~~~----~~~~~~~~-~~~i~~i 357 (510)
|+.|.+.++.. ...+...... ...+..++ ++++++. ... + ..+.+.|+..+ .....+.. ...+...
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 78888876643 2344433333 56777887 6666554 332 2 45888888764 22233332 2333332
Q ss_pred EEcCCCCEEEEe---cCCCcEEEEECCCCce---eeeeccccc-ccEEEEEEcCCCCEEEEEe-cCC--cEEEEEcCCce
Q 010470 358 AFSMDGQTIFSG---HIDGNLRLWDIQTGKL---LSEVAAHSL-AAVTSISLSRSGNIILTSG-RDN--LHNLFDIRSLE 427 (510)
Q Consensus 358 ~~~~~~~~l~~~---~~dg~i~i~d~~~~~~---~~~~~~~~~-~~i~~i~~~~~~~~l~~~~-~d~--~i~i~d~~~~~ 427 (510)
.-+..+.+++.. ..++.|...++..... ...+..+.. ..+..+.. .+++|+... .++ .|.++++..+.
T Consensus 283 v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 283 VDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGK 360 (414)
T ss_dssp EEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred EEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCc
Confidence 222244444433 2346787788877653 223333321 23444444 455555544 343 68889998333
Q ss_pred eeeEeecCCCeeecCceeEEEcCCCCEEEE--EcC--CCeEEEEeCCCcce
Q 010470 428 VCGSLRATGNRVASNWSRSCISPDESYVAA--GSA--DGSVYIWSISKADI 474 (510)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--~~~--dg~i~iwd~~~~~~ 474 (510)
....+....... +..+...++++.+.. .|. -++++.||+.+++.
T Consensus 361 ~~~~~~~p~~g~---v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 361 ESREIPLPEAGS---VSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEEESSSSSE---EEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EEeeecCCcceE---EeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 333333332221 112333455544332 222 36788888888765
No 355
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.40 E-value=1e-07 Score=89.91 Aligned_cols=197 Identities=15% Similarity=0.214 Sum_probs=128.3
Q ss_pred cceEEEEEecCC--CEEEEeeCCCeEEEEeCCCCcc--eecccccccceeEEEEecCCC-EEEEEe----CCCeEEEEEc
Q 010470 226 GGCASILFEYNS--ARLISGGQDKSIKLWDTNTGSL--SSTLYGCLGSVLDLAITHDNR-SVIAAS----SSNNLYVWDV 296 (510)
Q Consensus 226 ~~v~~~~~s~~~--~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~-~l~~~~----~d~~i~iwd~ 296 (510)
..+.|++++.+. ..++.|..+|.|.+-.+..... .....++..++++++|++-.. .|++|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 357777776544 4688999999999987754322 234567888999999988544 444442 3568999999
Q ss_pred CCC--CeeE--eecC-CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcC-CCCEEEEec
Q 010470 297 NSG--RVRH--TLTG-HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSM-DGQTIFSGH 370 (510)
Q Consensus 297 ~~~--~~~~--~~~~-~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~ 370 (510)
.++ .+.. .+.+ ......+++|.. +...+++|.....+.++|++.............+..+.+.| .++++++-.
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~ 215 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS 215 (783)
T ss_pred ccccCCCccccccccccccCcccccccc-CcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc
Confidence 876 2222 1222 334455788875 78889999999999999998332211111222467788888 777776655
Q ss_pred CCCcEEEEE-CCCCc-eeeeecccc---cccEEEEEEcCCCC-EEEEEe-cCCcEEEEEcC
Q 010470 371 IDGNLRLWD-IQTGK-LLSEVAAHS---LAAVTSISLSRSGN-IILTSG-RDNLHNLFDIR 424 (510)
Q Consensus 371 ~dg~i~i~d-~~~~~-~~~~~~~~~---~~~i~~i~~~~~~~-~l~~~~-~d~~i~i~d~~ 424 (510)
||.|.+|| .++-+ ++..+.... ...+..++|.|... .+++.. ..++|++||+.
T Consensus 216 -dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 216 -DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred -cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 89999999 44332 222222111 13588999999533 344444 44789999986
No 356
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.34 E-value=0.00021 Score=67.53 Aligned_cols=219 Identities=19% Similarity=0.239 Sum_probs=123.4
Q ss_pred ecCCCEEEEEe---------CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEee
Q 010470 276 THDNRSVIAAS---------SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN 346 (510)
Q Consensus 276 ~~~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 346 (510)
|||+++++... ..+.+.+||+.+++....... ...+....|+| +++.++... ++.|.+++..++...+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEE
Confidence 57888777743 246799999998765444333 67788899999 788877776 6889999988775443
Q ss_pred eeeec------------------CceeEEEEcCCCCEEEEecCC-C----------------------------------
Q 010470 347 TIIFH------------------SNCNALAFSMDGQTIFSGHID-G---------------------------------- 373 (510)
Q Consensus 347 ~~~~~------------------~~i~~i~~~~~~~~l~~~~~d-g---------------------------------- 373 (510)
..... ..-..+-|+|||++|+....| .
T Consensus 78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~ 157 (353)
T PF00930_consen 78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPR 157 (353)
T ss_dssp SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---E
T ss_pred eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCc
Confidence 32211 123678899999987753321 1
Q ss_pred -cEEEEECCCCceee-eec---ccccccEEEEEEcCCCCEEEEE--ecCC---cEEEEEcCCceeeeEeecCCCeeecCc
Q 010470 374 -NLRLWDIQTGKLLS-EVA---AHSLAAVTSISLSRSGNIILTS--GRDN---LHNLFDIRSLEVCGSLRATGNRVASNW 443 (510)
Q Consensus 374 -~i~i~d~~~~~~~~-~~~---~~~~~~i~~i~~~~~~~~l~~~--~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~ 443 (510)
.+.++|+.+++... ... .....-+..+.|.+++..|+.. .++. .+.++|..++............-....
T Consensus 158 v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~ 237 (353)
T PF00930_consen 158 VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVY 237 (353)
T ss_dssp EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSS
T ss_pred eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeee
Confidence 13445555444321 111 1122567889999998844433 3332 466778776554333332222111222
Q ss_pred eeEEEc-CCCC-EEEEEcCCCe--EEEEeCCCcceeecccccCcCEEE-EEEeCCCCcEE
Q 010470 444 SRSCIS-PDES-YVAAGSADGS--VYIWSISKADIVRTLKEHTAPVLS-CSWSGLGKPLA 498 (510)
Q Consensus 444 ~~~~~s-~~~~-~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~ 498 (510)
....+. +++. +|.....+|. |++++...+.. ..+....-.|.. +.|+++++.|+
T Consensus 238 ~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iy 296 (353)
T PF00930_consen 238 DPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIY 296 (353)
T ss_dssp SEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEE
T ss_pred cccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccCceeecccceEcCCCCEEE
Confidence 234444 5554 5555556665 55556555553 345445556755 67888877554
No 357
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.31 E-value=0.00064 Score=65.22 Aligned_cols=190 Identities=14% Similarity=0.228 Sum_probs=105.5
Q ss_pred eEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-----ceeE-----EEE
Q 010470 290 NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-----NCNA-----LAF 359 (510)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~i~~-----i~~ 359 (510)
.|.||+. .|+.+..+.-..+.+.++.|.. ...|++...||.+++||+. |.. .+.... .+.. ..+
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~--~e~LvvV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~ 135 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTD--DEELVVVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIWF 135 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECC--CCeEEEEEcCCEEEEEeCC-Cce--eechhhhccccCccccccccccc
Confidence 5888884 4777777665558999999976 4556667789999999996 433 222221 1211 122
Q ss_pred cCCCCEEEEecCCCcEEEEECCCCc-eeeeecccc--------cccEEE-EEEcCCCCEEEEEecCCcEEEEEcCCceee
Q 010470 360 SMDGQTIFSGHIDGNLRLWDIQTGK-LLSEVAAHS--------LAAVTS-ISLSRSGNIILTSGRDNLHNLFDIRSLEVC 429 (510)
Q Consensus 360 ~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~--------~~~i~~-i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 429 (510)
..+| ++.-+.++.+++..--... ....+.... ...... ..++.+....+....++.+.+.+-.....
T Consensus 136 ~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~- 212 (410)
T PF04841_consen 136 YKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ- 212 (410)
T ss_pred CCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc-
Confidence 2245 3333344555554322211 111111000 001111 23444444444444555555444322111
Q ss_pred eEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeeccccc-CcCEEEEEEeCCCC
Q 010470 430 GSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEH-TAPVLSCSWSGLGK 495 (510)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~ 495 (510)
+ ....++..+++||+|++||.-..+|.+.|.+.+-.+.+..+... ...+..+.|..++.
T Consensus 213 --i-----~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 213 --I-----DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred --c-----cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 1 11234666999999999999999999999987666665555433 34566777776543
No 358
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.28 E-value=7.9e-05 Score=75.31 Aligned_cols=140 Identities=19% Similarity=0.191 Sum_probs=95.4
Q ss_pred CCEEEEe-cCCCcEEEEECCCCceeeeecccccccEEEEEEcC-----CCCEEEEEecCCcEEEEEcCCce-eeeEeecC
Q 010470 363 GQTIFSG-HIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSR-----SGNIILTSGRDNLHNLFDIRSLE-VCGSLRAT 435 (510)
Q Consensus 363 ~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~-----~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~ 435 (510)
.++|+.. .....|+-.|+..|+.+..+..+...+|..++-.. ++.-.++|-.++.+..||.|-.. .+..-..+
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444443 45678999999999999999988755565554331 13345677788899999998532 11111222
Q ss_pred CCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCC
Q 010470 436 GNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKN 503 (510)
Q Consensus 436 ~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 503 (510)
.......+++++-+.+| +||+|+.+|.|++||-........+++-..||.+|..+.||++|++.+..
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t 639 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT 639 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc
Confidence 33333455666665555 78899999999999954333344466778999999999999988776544
No 359
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.28 E-value=0.00075 Score=61.44 Aligned_cols=217 Identities=17% Similarity=0.164 Sum_probs=127.4
Q ss_pred EEecCCC-EEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeec----
Q 010470 232 LFEYNSA-RLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLT---- 306 (510)
Q Consensus 232 ~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---- 306 (510)
.|.++.. ++++.-..+.|.-|+..++.... + .+.+.+.++..-..+..|+++.. .+.+++..++..+..+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~-~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV-F-PSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE-E-ECCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence 4667666 45666667889999988664321 1 22333445544445555555543 35666766555532221
Q ss_pred C-CCCceEEEEEecCCCCEEEEEeC-----------CCcEEEEECCCCeEeeeeee-cCceeEEEEcCCCCEEEEec-CC
Q 010470 307 G-HTDKVCAVDVSKISSRHVVSAAY-----------DRTLKVWDLHKGYCVNTIIF-HSNCNALAFSMDGQTIFSGH-ID 372 (510)
Q Consensus 307 ~-~~~~v~~i~~~~~~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~-~d 372 (510)
+ .....+.+.+.| ++.+.++... -|.|+.+|. .+..+..+.. -...+.++|+||++.++... ..
T Consensus 107 ~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 107 GLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred CCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence 1 123455677777 5555444332 144555555 3555554444 34578999999998777654 45
Q ss_pred CcEEEEECCC--C----ceeeeecccccccEEEEEEcCCCCEEEEEecCC-cEEEEEcCCceeeeEeecCCCeeecCcee
Q 010470 373 GNLRLWDIQT--G----KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDN-LHNLFDIRSLEVCGSLRATGNRVASNWSR 445 (510)
Q Consensus 373 g~i~i~d~~~--~----~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 445 (510)
+.|+.|++.. + +....+.....+..-.++...+|.+.+++..+| .|.+|+.. ++.+..+..+.....+
T Consensus 185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~---- 259 (307)
T COG3386 185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTN---- 259 (307)
T ss_pred CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCcc----
Confidence 7888887752 1 111222222336778889999999886555554 99999998 8888887776433332
Q ss_pred EEE-cCCCCEEEEEc
Q 010470 446 SCI-SPDESYVAAGS 459 (510)
Q Consensus 446 ~~~-s~~~~~l~~~~ 459 (510)
++| .|+.+.|++.+
T Consensus 260 ~~FgG~~~~~L~iTs 274 (307)
T COG3386 260 PAFGGPDLNTLYITS 274 (307)
T ss_pred ceEeCCCcCEEEEEe
Confidence 455 44555544443
No 360
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.27 E-value=0.00043 Score=64.60 Aligned_cols=213 Identities=15% Similarity=0.156 Sum_probs=121.6
Q ss_pred CeEEEEEcCCCCeeEeecCC-CCceEEEEEecCC------CCEEEEEeC---------C-CcEEEEECCCC-------eE
Q 010470 289 NNLYVWDVNSGRVRHTLTGH-TDKVCAVDVSKIS------SRHVVSAAY---------D-RTLKVWDLHKG-------YC 344 (510)
Q Consensus 289 ~~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~------~~~l~s~~~---------d-g~i~iwd~~~~-------~~ 344 (510)
+.|++.|..+.+.+..+.-. ...+.+++..... ..+|+.|+. . |.|.++++... +.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35788888777766665432 2334444332211 466776653 2 89999999884 23
Q ss_pred eeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCc-eeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEc
Q 010470 345 VNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK-LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDI 423 (510)
Q Consensus 345 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~ 423 (510)
+......++|++++-. +|. |+++. ++.|.+|++...+ ....-..+....+.++... ++++++|.....+.++..
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 3344556778888876 444 44444 3689999998877 4443333332456666554 669999998888887754
Q ss_pred CC-ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC-------cc-eee-cccc-cCcCEEEE---E
Q 010470 424 RS-LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK-------AD-IVR-TLKE-HTAPVLSC---S 489 (510)
Q Consensus 424 ~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~-------~~-~~~-~~~~-~~~~v~~~---~ 489 (510)
.. ...+..+..... ...+.++.+-++++.++++..+|.+.++.... +. .+. ...- ....|+++ +
T Consensus 157 ~~~~~~l~~va~d~~--~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~ 234 (321)
T PF03178_consen 157 DEENNKLILVARDYQ--PRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGS 234 (321)
T ss_dssp ETTTE-EEEEEEESS---BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--
T ss_pred EccCCEEEEEEecCC--CccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEE
Confidence 43 222222222211 12234466665667999999999999998763 11 111 1111 24567777 5
Q ss_pred EeCC--CC------cEEEeeCCCeEEE
Q 010470 490 WSGL--GK------PLASADKNGVVCV 508 (510)
Q Consensus 490 ~~~~--~~------~l~s~~~dg~i~i 508 (510)
+.|. +. .++.++.+|.|.+
T Consensus 235 l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 235 LIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred eeecCCCCcccccceEEEEecCCEEEE
Confidence 4552 22 3888889998863
No 361
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.25 E-value=0.0022 Score=61.56 Aligned_cols=176 Identities=15% Similarity=0.125 Sum_probs=95.6
Q ss_pred eEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee-------cCCCCceEEEEEecC
Q 010470 248 SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL-------TGHTDKVCAVDVSKI 320 (510)
Q Consensus 248 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-------~~~~~~v~~i~~~~~ 320 (510)
.|.||+.. |+.+.++.-..+.+.++.|+.+ ..|++...||.+++||+. |+....+ .-....+....+.
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~-- 136 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFY-- 136 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccC--
Confidence 59999876 6666665544489999999875 557777899999999986 3331111 1111112222222
Q ss_pred CCCEEEEEeCCCcEEEEECCCCe-Eeeeee-ecC---------ceeE-EEEcCCCCEEEEecCCCcEEEEECCCCceeee
Q 010470 321 SSRHVVSAAYDRTLKVWDLHKGY-CVNTII-FHS---------NCNA-LAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSE 388 (510)
Q Consensus 321 ~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~-~~~---------~i~~-i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 388 (510)
+...++. ..++.+.+.+-.... ....+. .+. .... ..++.+....+....++.+.+.+-...+.
T Consensus 137 ~~GivvL-t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~--- 212 (410)
T PF04841_consen 137 KNGIVVL-TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ--- 212 (410)
T ss_pred CCCEEEE-CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---
Confidence 1233333 234444444322211 111110 010 0111 22333444444444455555444322211
Q ss_pred ecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeec
Q 010470 389 VAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRA 434 (510)
Q Consensus 389 ~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 434 (510)
+.. .+++..+++||+|++++.-..+|.+.+.+..-.+....+..
T Consensus 213 i~~--~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~ 256 (410)
T PF04841_consen 213 IDS--DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT 256 (410)
T ss_pred ccC--CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec
Confidence 221 26899999999999999999999998887655555444443
No 362
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.25 E-value=0.00081 Score=61.32 Aligned_cols=215 Identities=16% Similarity=0.190 Sum_probs=121.9
Q ss_pred cCCCEEEEEeCCCeEEEEEcCC-CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEee---------
Q 010470 277 HDNRSVIAASSSNNLYVWDVNS-GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN--------- 346 (510)
Q Consensus 277 ~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--------- 346 (510)
..++.|+.|+.+| +++++... ....... +...|..+.+.| .-+.+++-+ |+.+.++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 4578899999888 99999833 2333322 233499999988 556666555 6999999987544333
Q ss_pred ------eeeecCceeEEE--EcCCC-CEEEEecCCCcEEEEECCCC-----ceeeeecccccccEEEEEEcCCCCEEEEE
Q 010470 347 ------TIIFHSNCNALA--FSMDG-QTIFSGHIDGNLRLWDIQTG-----KLLSEVAAHSLAAVTSISLSRSGNIILTS 412 (510)
Q Consensus 347 ------~~~~~~~i~~i~--~~~~~-~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 412 (510)
.+.....+..++ -.+.+ ..++++. ...|.+|..... +....+... ..+.++.|. ++.++.|
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp--~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLP--DPPSSIAFL--GNKICVG 154 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcC--CCcEEEEEe--CCEEEEE
Confidence 112223344444 12233 3444444 458888877543 455666655 688999998 5677777
Q ss_pred ecCCcEEEEEcCCceeeeEeecCCCe--------eecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceee--cccccC
Q 010470 413 GRDNLHNLFDIRSLEVCGSLRATGNR--------VASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVR--TLKEHT 482 (510)
Q Consensus 413 ~~d~~i~i~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~ 482 (510)
..+ ...+.|+.++.....+...... ...+.. +.--+++.+|++.. ..-.+.|. .|++.. .+.- .
T Consensus 155 ~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~Ll~~~--~~g~fv~~-~G~~~r~~~i~W-~ 228 (275)
T PF00780_consen 155 TSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLG-IFQLSDNEFLLCYD--NIGVFVNK-NGEPSRKSTIQW-S 228 (275)
T ss_pred eCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceE-EEEeCCceEEEEec--ceEEEEcC-CCCcCcccEEEc-C
Confidence 655 4778899876665444322211 011111 22223456666543 32333343 444433 2222 2
Q ss_pred cCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 483 APVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 483 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
..+.++++. .++|+..+.+ .|.||+
T Consensus 229 ~~p~~~~~~--~pyli~~~~~-~iEV~~ 253 (275)
T PF00780_consen 229 SAPQSVAYS--SPYLIAFSSN-SIEVRS 253 (275)
T ss_pred CchhEEEEE--CCEEEEECCC-EEEEEE
Confidence 345566663 3477777664 487774
No 363
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.22 E-value=2.6e-05 Score=75.04 Aligned_cols=116 Identities=20% Similarity=0.318 Sum_probs=85.6
Q ss_pred cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEe-ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 010470 266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT-LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC 344 (510)
Q Consensus 266 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 344 (510)
+...|.--+++..+++++.|+.-|.+++|+-..+..... ..+..+.+....+++ ...+++.|+..|.|.++-+..+.+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCC
Confidence 344555556777899999999999999999766553322 223444555666666 778888999999999998876432
Q ss_pred eeee---e----ecCceeEEEEcCCCCEEEEecCCCcEEEEECCC
Q 010470 345 VNTI---I----FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQT 382 (510)
Q Consensus 345 ~~~~---~----~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~ 382 (510)
.... . +...|++++|++++..+++|...|.|..-.+.+
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 2211 1 123599999999999999999999999888766
No 364
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.17 E-value=0.00011 Score=74.23 Aligned_cols=143 Identities=22% Similarity=0.313 Sum_probs=98.4
Q ss_pred CCCEEEEE-eCCCeEEEEEcCCCCeeEeecCCCCc-eEEEEEec----CCCCEEEEEeCCCcEEEEECCCCe--Eee---
Q 010470 278 DNRSVIAA-SSSNNLYVWDVNSGRVRHTLTGHTDK-VCAVDVSK----ISSRHVVSAAYDRTLKVWDLHKGY--CVN--- 346 (510)
Q Consensus 278 ~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~i~~~~----~~~~~l~s~~~dg~i~iwd~~~~~--~~~--- 346 (510)
+.++|+.. ...+.|+-.|++.|+.+..+..|... |..++-.. ..+...+.|-.++.+..||++-.. ++.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 33444443 34578999999999999999887654 55543221 123456677778999999998532 222
Q ss_pred -eeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEc
Q 010470 347 -TIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDI 423 (510)
Q Consensus 347 -~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~ 423 (510)
.+.......|++-+.+| +||+|+.+|.|++|| +.|+...+.-..-+.+|..|+.+.||+++++.+.. .+.+++.
T Consensus 572 k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd-~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYD-RLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred cccccCCCceEEEecCCc-eEEEEeCCCcEEeec-ccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 12223457888887666 688999999999999 45544444333333899999999999999888755 4556654
No 365
>PHA02713 hypothetical protein; Provisional
Probab=98.16 E-value=0.0003 Score=70.50 Aligned_cols=224 Identities=11% Similarity=0.066 Sum_probs=111.7
Q ss_pred eEEEEeCCCCccee--cccccccceeEEEEecCCCEEEEEeCC------CeEEEEEcCCCCeeE--eecCCCCceEEEEE
Q 010470 248 SIKLWDTNTGSLSS--TLYGCLGSVLDLAITHDNRSVIAASSS------NNLYVWDVNSGRVRH--TLTGHTDKVCAVDV 317 (510)
Q Consensus 248 ~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~--~~~~~~~~v~~i~~ 317 (510)
.+..||..+++... .+...... .+++. -++..+++|+.+ ..+..||+.++.... .+....... +++.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE
Confidence 56778887665321 22211111 12222 366777777743 357788887664321 111111111 2222
Q ss_pred ecCCCCEEEEEeCCC-----cEEEEECCCCeEeeeeeecCc--eeEEEEcCCCCEEEEecCCC-----------------
Q 010470 318 SKISSRHVVSAAYDR-----TLKVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFSGHIDG----------------- 373 (510)
Q Consensus 318 ~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~dg----------------- 373 (510)
. ++.+.+.||.++ .+..||..++.....-..+.+ -.+++ ..+|...+.|+.++
T Consensus 350 ~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 350 I--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred E--CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE-EECCEEEEEeCCCcccccccccccccccccc
Confidence 2 577778888754 488899987754332222221 11222 22677777777542
Q ss_pred ------cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC------CcEEEEEcCC-ceeeeEeecCCCeee
Q 010470 374 ------NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD------NLHNLFDIRS-LEVCGSLRATGNRVA 440 (510)
Q Consensus 374 ------~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------~~i~i~d~~~-~~~~~~~~~~~~~~~ 440 (510)
.+..||+.+.+-...-.... .....-...-+|.+.+.|+.+ ..+..||..+ .+-......+.....
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~~m~~-~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~ 505 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLPNFWT-GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA 505 (557)
T ss_pred cccccceEEEECCCCCeEeecCCCCc-ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence 47788887654321111111 111111122346666777654 2467888876 332211111111111
Q ss_pred cCceeEEEcCCCCEEEEEcCCC--eEEEEeCCCcceeecccccC
Q 010470 441 SNWSRSCISPDESYVAAGSADG--SVYIWSISKADIVRTLKEHT 482 (510)
Q Consensus 441 ~~~~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~ 482 (510)
. -...-+|.+.++|+.+| ++..||..+.+=......|.
T Consensus 506 ~----~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 506 L----HTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred c----eeEEECCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence 1 12233788888999888 77788877665333333343
No 366
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.15 E-value=0.004 Score=54.38 Aligned_cols=185 Identities=11% Similarity=0.071 Sum_probs=121.4
Q ss_pred ceEEEEEecCCCCEEEEEeCCC--cEEEEECCCCeEeeeeeecCc--eeEEEEcCCCCEEEEecCCCcEEEEECCCCcee
Q 010470 311 KVCAVDVSKISSRHVVSAAYDR--TLKVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL 386 (510)
Q Consensus 311 ~v~~i~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 386 (510)
-..++.|.. ++.++-+.+.-| .|+.+|+.+++.......+.. --.++.. ++......-.+|...+||..+.+.+
T Consensus 46 FTQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 46 FTQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cCccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEE
Confidence 345677755 677777777766 799999999998887777655 3445554 3444556677899999999999998
Q ss_pred eeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCe-eecCceeEEEcCCCCEEEEEcCCCeEE
Q 010470 387 SEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNR-VASNWSRSCISPDESYVAAGSADGSVY 465 (510)
Q Consensus 387 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~dg~i~ 465 (510)
..+... +.-..++ .+|..|+.+.....++++|..+.+....+...... ....++-+-+- +|...|=.-....|.
T Consensus 124 ~~~~y~--~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~ 198 (264)
T PF05096_consen 124 GTFPYP--GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIV 198 (264)
T ss_dssp EEEE-S--SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEecC--CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEE
Confidence 888766 3445555 56788888888889999999998887776644322 22234445443 566666566667788
Q ss_pred EEeCCCcceeecccc------------c---CcCEEEEEEeCCCCcEEEeeC
Q 010470 466 IWSISKADIVRTLKE------------H---TAPVLSCSWSGLGKPLASADK 502 (510)
Q Consensus 466 iwd~~~~~~~~~~~~------------~---~~~v~~~~~~~~~~~l~s~~~ 502 (510)
..|..+|..+..+.. + ..-.++++|.|.+..|...|.
T Consensus 199 ~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 199 RIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 889999887665421 1 345799999998776555443
No 367
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.11 E-value=0.0015 Score=54.77 Aligned_cols=208 Identities=13% Similarity=0.175 Sum_probs=116.5
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCeeE-eecCCCCceEEEEEecCCC---CEEEEEeCCCcEEEEECCC--CeEeeeeee--
Q 010470 279 NRSVIAASSSNNLYVWDVNSGRVRH-TLTGHTDKVCAVDVSKISS---RHVVSAAYDRTLKVWDLHK--GYCVNTIIF-- 350 (510)
Q Consensus 279 ~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~---~~l~s~~~dg~i~iwd~~~--~~~~~~~~~-- 350 (510)
+.++.+--..|.|.-||..+++... ++.+.. +.++.+ |..+ .+.+.++..-.|.-||... -....++..
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~il-pv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~ 103 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFIL-PVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQ 103 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEE-EecCCCceEEEeecceEEEEEcccccceeeeeeeccccC
Confidence 3344444466777779887765433 233221 223322 2222 3444445444556677432 223333211
Q ss_pred ----cCceeEEEEcCCCCEEEEecC----------CCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEE-EEecC
Q 010470 351 ----HSNCNALAFSMDGQTIFSGHI----------DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIIL-TSGRD 415 (510)
Q Consensus 351 ----~~~i~~i~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d 415 (510)
....+.-..+|+|++++ |.. .|.++.|-. +..+..+...- .-.+.++|+.+.+.++ +-+.+
T Consensus 104 ~d~kknR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v-~IsNgl~Wd~d~K~fY~iDsln 179 (310)
T KOG4499|consen 104 PDRKKNRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLA--GHQVELIWNCV-GISNGLAWDSDAKKFYYIDSLN 179 (310)
T ss_pred chHHhcccccCccCCCCceee-eeeccccccccccccEEEEecc--CCCceeeehhc-cCCccccccccCcEEEEEccCc
Confidence 23467788899999844 332 133344332 11111111111 3456788888777654 44556
Q ss_pred CcEEEEE--cCCcee-----eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEE
Q 010470 416 NLHNLFD--IRSLEV-----CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSC 488 (510)
Q Consensus 416 ~~i~i~d--~~~~~~-----~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 488 (510)
-.|.-|| ..++.. +..++.....-......+++..+|++.++.-..|+|..+|..+|+.+.+++-....|+++
T Consensus 180 ~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsc 259 (310)
T KOG4499|consen 180 YEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSC 259 (310)
T ss_pred eEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEE
Confidence 6776676 444332 222222111111111236678889999998889999999999999999998888999999
Q ss_pred EEeCC
Q 010470 489 SWSGL 493 (510)
Q Consensus 489 ~~~~~ 493 (510)
+|...
T Consensus 260 cFgGk 264 (310)
T KOG4499|consen 260 CFGGK 264 (310)
T ss_pred EecCC
Confidence 99643
No 368
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.09 E-value=0.00015 Score=68.62 Aligned_cols=220 Identities=12% Similarity=0.137 Sum_probs=113.4
Q ss_pred ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceec--cc------ccccceeEEEEec-----CC---C
Q 010470 217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSST--LY------GCLGSVLDLAITH-----DN---R 280 (510)
Q Consensus 217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~------~~~~~v~~~~~~~-----~~---~ 280 (510)
+...+....++|++++.|.=| +++.|..+|.+.|.|+.....+.. +. .....|+++.|.. |+ -
T Consensus 78 P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi 156 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI 156 (395)
T ss_dssp EEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred chhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence 445566679999999998554 999999999999999976655443 11 1344677888852 22 3
Q ss_pred EEEEEeCCCeEEEEEcCC---CCeeEeec----CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec--
Q 010470 281 SVIAASSSNNLYVWDVNS---GRVRHTLT----GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-- 351 (510)
Q Consensus 281 ~l~~~~~d~~i~iwd~~~---~~~~~~~~----~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-- 351 (510)
.+++|.+.|.+.+|.+.- +.....+. .+.++|. .|..+|..+|.........
T Consensus 157 ~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~-------------------~I~~i~~~~G~~a~At~~~~~ 217 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPIL-------------------SIIPINADTGESALATISAMQ 217 (395)
T ss_dssp EEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS-----------------------EEEEEETTT--B-B-BHHHHH
T ss_pred EEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceE-------------------EEEEEECCCCCcccCchhHhh
Confidence 678888889999987641 11111110 1111111 2333344444322111100
Q ss_pred CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEc-----CCCCEEEEEecCCcEEEEEcCCc
Q 010470 352 SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLS-----RSGNIILTSGRDNLHNLFDIRSL 426 (510)
Q Consensus 352 ~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~-----~~~~~l~~~~~d~~i~i~d~~~~ 426 (510)
.--..+.. .| ++++++ +..++++...+.+...+..... .....+.+- ..+..|++-..+|.+++|.+...
T Consensus 218 ~l~~g~~i--~g-~vVvvS-e~~irv~~~~~~k~~~K~~~~~-~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L 292 (395)
T PF08596_consen 218 GLSKGISI--PG-YVVVVS-ESDIRVFKPPKSKGAHKSFDDP-FLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL 292 (395)
T ss_dssp GGGGT------E-EEEEE--SSEEEEE-TT---EEEEE-SS--EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-
T ss_pred ccccCCCc--Cc-EEEEEc-ccceEEEeCCCCcccceeeccc-cccceEEEEeecccCCceEEEEEECCCcEEEEECCCc
Confidence 00001111 12 333333 5679999998887766655322 333444452 35678888899999999999999
Q ss_pred eeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC
Q 010470 427 EVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD 461 (510)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 461 (510)
+.+.................+++++|..++..+..
T Consensus 293 kei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gps 327 (395)
T PF08596_consen 293 KEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPS 327 (395)
T ss_dssp -EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSS
T ss_pred hHhhcccCCCccccccccccEECCCCCEEEEeCcc
Confidence 98888877644333334457889999988766543
No 369
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.00025 Score=66.29 Aligned_cols=139 Identities=17% Similarity=0.208 Sum_probs=96.3
Q ss_pred CCCEEE-EecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCE-------EEEEecCCcEEEEEcCCc-e-eeeE
Q 010470 362 DGQTIF-SGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNI-------ILTSGRDNLHNLFDIRSL-E-VCGS 431 (510)
Q Consensus 362 ~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-------l~~~~~d~~i~i~d~~~~-~-~~~~ 431 (510)
+.++|+ .+.....++-.|+..|+.+..+..+. .|+-+.+.|+++. -+.|-.++.|.-||+|-. . .+..
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~--di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFED--DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccC--CcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 344444 56666779999999999999999885 3777888887542 245667888999998832 1 2222
Q ss_pred eecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCC
Q 010470 432 LRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKN 503 (510)
Q Consensus 432 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 503 (510)
...+.......+.|.+-.. ..+|++||.+|.|++||--.......+++-..+|..+..+.+|++|+..+..
T Consensus 422 ~q~kqy~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred eeccccccccccceeeecC-CceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence 3333333333444444444 4488999999999999963333344567888999999999999987766543
No 370
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.06 E-value=0.00055 Score=68.40 Aligned_cols=232 Identities=14% Similarity=0.175 Sum_probs=123.8
Q ss_pred ecCCCEEEEeeCCC------eEEEEeCCCCcceeccc-ccccceeEEEEecCCCEEEEEeCC------CeEEEEEcCCCC
Q 010470 234 EYNSARLISGGQDK------SIKLWDTNTGSLSSTLY-GCLGSVLDLAITHDNRSVIAASSS------NNLYVWDVNSGR 300 (510)
Q Consensus 234 s~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~ 300 (510)
+..+.+++.||.++ .+..||..++....... .....-.+++.. +|...++|+.| .++..||..+++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 33456777777773 58888888774322211 122223344444 56777888877 367888888776
Q ss_pred eeEeecCCCCceEEEEEecCCCCEEEEEeCCC-----cEEEEECCCCeEeeeeeecCceeEEE-EcCCCCEEEEecCCC-
Q 010470 301 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR-----TLKVWDLHKGYCVNTIIFHSNCNALA-FSMDGQTIFSGHIDG- 373 (510)
Q Consensus 301 ~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~i~~i~-~~~~~~~l~~~~~dg- 373 (510)
-.. +.....+-..+.....++.+.++||.|| +|-.||..+.+.-..-.......... ..-+|...++|+.+|
T Consensus 361 W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 361 WTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGS 439 (571)
T ss_pred eec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCC
Confidence 333 2222222222222223688889999886 47778887665332222221211111 122688888887554
Q ss_pred -----cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCC-----cEEEEEcCCceeeeEeecCCCeeecCc
Q 010470 374 -----NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDN-----LHNLFDIRSLEVCGSLRATGNRVASNW 443 (510)
Q Consensus 374 -----~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~~ 443 (510)
.+..||..++.-...-.......-..++ .-++.+.++|+.|+ .|..||..+.+....-.........
T Consensus 440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~-- 516 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAV-- 516 (571)
T ss_pred ccccceEEEEcCCCCceeecCCcccccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccc--
Confidence 4778898776533222211111111122 22567778888776 3777888765543331111111111
Q ss_pred eeEEEcCCCCEEEEEcCCC-----eEEEEeCCCc
Q 010470 444 SRSCISPDESYVAAGSADG-----SVYIWSISKA 472 (510)
Q Consensus 444 ~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~ 472 (510)
-+..-++...++|+.|| +|..||..++
T Consensus 517 --g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 517 --GVVVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred --cEEEECCEEEEEecccCccccceeEEcCCCCC
Confidence 11233677777888776 4666765543
No 371
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.05 E-value=0.00063 Score=50.33 Aligned_cols=101 Identities=14% Similarity=0.159 Sum_probs=73.3
Q ss_pred eEEEEEecC---CCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeee
Q 010470 312 VCAVDVSKI---SSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSE 388 (510)
Q Consensus 312 v~~i~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 388 (510)
|+++++... +.+.|++|+.|..|++|+- ...+..+.....+.+++-... ..|+.+..+|+|-+|+- ...+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceeee
Confidence 556666543 3478999999999999984 577888888888999988765 66888999999999984 444555
Q ss_pred ecccccccEEEEEEcC-CC---CEEEEEecCCcEE
Q 010470 389 VAAHSLAAVTSISLSR-SG---NIILTSGRDNLHN 419 (510)
Q Consensus 389 ~~~~~~~~i~~i~~~~-~~---~~l~~~~~d~~i~ 419 (510)
++.. ..+.++.+.. ++ .-|++|-.+|.|-
T Consensus 77 iKSK--~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKSK--NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eccC--CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 5544 3456655443 32 2688888888764
No 372
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.04 E-value=0.011 Score=60.14 Aligned_cols=274 Identities=14% Similarity=0.115 Sum_probs=159.7
Q ss_pred ceEEEEEecCCCEEEEeeCCCeEEEEeC--CCCcceec--ccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCee
Q 010470 227 GCASILFEYNSARLISGGQDKSIKLWDT--NTGSLSST--LYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR 302 (510)
Q Consensus 227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~--~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 302 (510)
.|.-..|-.|+.+|.++..||.+.-|.+ .+|..... ..-...++.--.|+..++.-+.+.+|.-..+|.- +++..
T Consensus 585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~-n~kLv 663 (1096)
T KOG1897|consen 585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSS-NGKLV 663 (1096)
T ss_pred heeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEec-CCcEE
Confidence 3555556667889999999999877655 44443211 1223456666677777776666777777777763 34433
Q ss_pred EeecCCCCceEE-EEEecC-CCCEEEEEeCCCcEEEEECCC--CeEeeeeeecCceeEEEEcCCCCEEEEecCC------
Q 010470 303 HTLTGHTDKVCA-VDVSKI-SSRHVVSAAYDRTLKVWDLHK--GYCVNTIIFHSNCNALAFSMDGQTIFSGHID------ 372 (510)
Q Consensus 303 ~~~~~~~~~v~~-i~~~~~-~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------ 372 (510)
.+--... .+.. ..|+.. .+..++++. .+.+.+.-+.. .-.++++..+..+..+++.+....+.+.+..
T Consensus 664 ~spls~k-ev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~ 741 (1096)
T KOG1897|consen 664 YSPLSLK-EVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAE 741 (1096)
T ss_pred EeccchH-HhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchh
Confidence 2211111 1111 112211 233455544 55677765543 2334556666778888888755555443321
Q ss_pred --------CcEEEEECCCCceeeeecccccc---cEEEEEEcCC-CCEEEEEe----------cCCcEEEEEcCCceeee
Q 010470 373 --------GNLRLWDIQTGKLLSEVAAHSLA---AVTSISLSRS-GNIILTSG----------RDNLHNLFDIRSLEVCG 430 (510)
Q Consensus 373 --------g~i~i~d~~~~~~~~~~~~~~~~---~i~~i~~~~~-~~~l~~~~----------~d~~i~i~d~~~~~~~~ 430 (510)
..++++|-.+.+.+......... .+.+..|..| +.++++|. ..|.|.+|.......+.
T Consensus 742 ~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~ 821 (1096)
T KOG1897|consen 742 YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLE 821 (1096)
T ss_pred hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCcee
Confidence 13677777766655544433222 3455558777 66777775 34777787766522222
Q ss_pred EeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEE
Q 010470 431 SLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCV 508 (510)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i 508 (510)
... ...+...+..+ .-.+|+++|.- +..|++|+..+.+.+..-..|..++..+...-.|..++.|+.=++|.+
T Consensus 822 ~v~--e~~v~Gav~aL-~~fngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 822 LVA--ETVVKGAVYAL-VEFNGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred eee--eeeeccceeeh-hhhCCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 211 11111111111 12467777654 457999999988777777778889999999888999999887666643
No 373
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.04 E-value=0.0081 Score=55.49 Aligned_cols=244 Identities=15% Similarity=0.109 Sum_probs=116.0
Q ss_pred eCCCCcceecccccc-----cceeEEEEecCCCEEEEEeC-C--CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCE
Q 010470 253 DTNTGSLSSTLYGCL-----GSVLDLAITHDNRSVIAASS-S--NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRH 324 (510)
Q Consensus 253 d~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 324 (510)
|..+|..+..+.... ...+.=+|.++|+.|+.++. + ..+++.|+.+++..+.-.+......+..++| +++.
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~-~~~~ 94 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSP-DDRA 94 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-T-TSSE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEec-CCCe
Confidence 455665555554322 23344577889987777664 4 4678888888876655443323333455667 5566
Q ss_pred EEEEeCCCcEEEEECCCCeEeeeeeecCcee-EEEE--cCCCCEEEEec---C-------------------CCcEEEEE
Q 010470 325 VVSAAYDRTLKVWDLHKGYCVNTIIFHSNCN-ALAF--SMDGQTIFSGH---I-------------------DGNLRLWD 379 (510)
Q Consensus 325 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~-~i~~--~~~~~~l~~~~---~-------------------dg~i~i~d 379 (510)
++-......|.-.|+.+.+....+..+.... ...| +.++..++-.- . ...|...|
T Consensus 95 ~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~id 174 (386)
T PF14583_consen 95 LYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTID 174 (386)
T ss_dssp EEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEE
T ss_pred EEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEE
Confidence 6555556789999999987666666555422 2444 34565544211 1 12466667
Q ss_pred CCCCceeeeecccccccEEEEEEcCCCCEEEEEecCC-----cEEEEEcCC-ceeeeEeecCCCeeecCceeEEEcCCCC
Q 010470 380 IQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDN-----LHNLFDIRS-LEVCGSLRATGNRVASNWSRSCISPDES 453 (510)
Q Consensus 380 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~-----~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 453 (510)
+.+|+....+... ..+.-+.|+|....+++-|..| .-+||-+++ +.....+..+.. ...+..=-|.|||.
T Consensus 175 l~tG~~~~v~~~~--~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~--~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 175 LKTGERKVVFEDT--DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME--GESVGHEFWVPDGS 250 (386)
T ss_dssp TTT--EEEEEEES--S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T--TEEEEEEEE-TTSS
T ss_pred CCCCceeEEEecC--ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC--CcccccccccCCCC
Confidence 8887765555544 6788899999777666655443 125565442 222222222211 11223345899999
Q ss_pred EEEEEc-----CCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCC
Q 010470 454 YVAAGS-----ADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKN 503 (510)
Q Consensus 454 ~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 503 (510)
.|..-+ .+..|.-+|+.+++...... ......+--++||++++--|.|
T Consensus 251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE--
T ss_pred EEEEEeecCCCCceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCC
Confidence 876532 24467778888876533222 2244566677888877665544
No 374
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.0082 Score=52.33 Aligned_cols=268 Identities=13% Similarity=0.084 Sum_probs=149.1
Q ss_pred ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc--ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC---e
Q 010470 227 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY--GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR---V 301 (510)
Q Consensus 227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~ 301 (510)
-+..+.++ +++...+..+.-++|.|+.+......+. ...+.-. .|.-.|++..++..|.-+.++|+.+.. .
T Consensus 88 l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyay--gv~vsGn~aYVadlddgfLivdvsdpssP~l 163 (370)
T COG5276 88 LFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAY--GVYVSGNYAYVADLDDGFLIVDVSDPSSPQL 163 (370)
T ss_pred hhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEE--EEEecCCEEEEeeccCcEEEEECCCCCCcee
Confidence 34555565 4577777777789999997654433221 1112233 344468889888866677788887643 3
Q ss_pred eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC---eEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEE
Q 010470 302 RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG---YCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLW 378 (510)
Q Consensus 302 ~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~ 378 (510)
...+......-+.+++ .+++.+.+..|+-+.+.|+... ..+........+.++..+++..+++.... -+.+-
T Consensus 164 agrya~~~~d~~~v~I---SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e--gvliv 238 (370)
T COG5276 164 AGRYALPGGDTHDVAI---SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE--GVLIV 238 (370)
T ss_pred eeeeccCCCCceeEEE---ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc--ceEEE
Confidence 3333333444455665 4677777888999999998654 33333344446778888776666655543 47777
Q ss_pred ECCCCceeeeecccccccEEEE-EEcCCCCEEEEEecCCcEEEEEcCCceee---eEeecCCCeeecCceeEEEcCCCCE
Q 010470 379 DIQTGKLLSEVAAHSLAAVTSI-SLSRSGNIILTSGRDNLHNLFDIRSLEVC---GSLRATGNRVASNWSRSCISPDESY 454 (510)
Q Consensus 379 d~~~~~~~~~~~~~~~~~i~~i-~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~s~~~~~ 454 (510)
|....+.+..+.......+.++ .+.-.+++......+.-+.+.|+.+.... ..+...+... -.+...|.+
T Consensus 239 d~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a------~gi~ay~~y 312 (370)
T COG5276 239 DVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQA------AGIRAYGNY 312 (370)
T ss_pred ecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccc------cceEEecCe
Confidence 8777665555543332333333 33335666666666666666666542211 1111111000 112223444
Q ss_pred EEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 455 VAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 455 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+.....+ ...+-+....+......+...-+.+++.+-+.+.+.+...+|-+.+|+
T Consensus 313 ~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~ 367 (370)
T COG5276 313 NYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIE 367 (370)
T ss_pred eEeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEE
Confidence 4444444 344445443333322222222344445555566788888899888885
No 375
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.01 E-value=0.008 Score=52.52 Aligned_cols=186 Identities=13% Similarity=0.097 Sum_probs=119.2
Q ss_pred ceeEEEEecCCCEEEEEeCCC--eEEEEEcCCCCeeEeecCCC-CceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEe
Q 010470 269 SVLDLAITHDNRSVIAASSSN--NLYVWDVNSGRVRHTLTGHT-DKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV 345 (510)
Q Consensus 269 ~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 345 (510)
-...+.|..+|.++-+.+.-| .|+.+|+.+++......-.. ----+++.. ++.+....-.++...+||..+-+.+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEE
Confidence 345688877888777777655 89999999999776554222 122334443 3455555666899999999999999
Q ss_pred eeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccc----cccEEEEEEcCCCCEEEEEecCCcEEEE
Q 010470 346 NTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS----LAAVTSISLSRSGNIILTSGRDNLHNLF 421 (510)
Q Consensus 346 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~i~~i~~~~~~~~l~~~~~d~~i~i~ 421 (510)
.++.....-..++ .+|..|+.+.....++++|..+.+....+.... ...++-+.|- +|.+.+=.-....|...
T Consensus 124 ~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I 200 (264)
T PF05096_consen 124 GTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI 200 (264)
T ss_dssp EEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence 9998887777787 467777777667799999998887776665432 1245556664 56666666677788999
Q ss_pred EcCCceeeeEeecCC-----------CeeecCceeEEEcCCCCEEEEEc
Q 010470 422 DIRSLEVCGSLRATG-----------NRVASNWSRSCISPDESYVAAGS 459 (510)
Q Consensus 422 d~~~~~~~~~~~~~~-----------~~~~~~~~~~~~s~~~~~l~~~~ 459 (510)
|..+|++...+.... .+.....+.+++.|.++.|...+
T Consensus 201 dp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 201 DPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp ETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 999999887764211 01122356699988766554444
No 376
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.99 E-value=0.0038 Score=64.22 Aligned_cols=200 Identities=13% Similarity=0.156 Sum_probs=126.2
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCc--------eEEEEEec---------------CCCCEEEEEeCCCcEE
Q 010470 279 NRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDK--------VCAVDVSK---------------ISSRHVVSAAYDRTLK 335 (510)
Q Consensus 279 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--------v~~i~~~~---------------~~~~~l~s~~~dg~i~ 335 (510)
+..++.++.++.|.-.|..+|+.+..+...... ...+.+.. .....++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 567888888899999999999988887543211 12233321 1345788888899999
Q ss_pred EEECCCCeEeeeeeecCcee-------------EEEEcC--CCCEEEEecC----------CCcEEEEECCCCceeeeec
Q 010470 336 VWDLHKGYCVNTIIFHSNCN-------------ALAFSM--DGQTIFSGHI----------DGNLRLWDIQTGKLLSEVA 390 (510)
Q Consensus 336 iwd~~~~~~~~~~~~~~~i~-------------~i~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~ 390 (510)
-.|..+|+....+.....+. .+.-.| .+..+++|+. +|.|+-||.++|+.+..+.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 99999999887765433221 111122 2445666642 6889999999999988775
Q ss_pred ccc----------------cccE-EEEEEcCCCCEEEEEe------------------cCCcEEEEEcCCceeeeEeecC
Q 010470 391 AHS----------------LAAV-TSISLSRSGNIILTSG------------------RDNLHNLFDIRSLEVCGSLRAT 435 (510)
Q Consensus 391 ~~~----------------~~~i-~~i~~~~~~~~l~~~~------------------~d~~i~i~d~~~~~~~~~~~~~ 435 (510)
... ...+ ..+++++....++.+. ..+.|.-.|+.+++..-.+...
T Consensus 354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~ 433 (764)
T TIGR03074 354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV 433 (764)
T ss_pred cCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc
Confidence 321 0011 2345555555544422 1245666788888887777652
Q ss_pred CCee-----ecCceeEEEcC-CCC---EEEEEcCCCeEEEEeCCCcceeecc
Q 010470 436 GNRV-----ASNWSRSCISP-DES---YVAAGSADGSVYIWSISKADIVRTL 478 (510)
Q Consensus 436 ~~~~-----~~~~~~~~~s~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~~ 478 (510)
.+.. .....-+.+.. +|+ .++.++.+|.++++|-.+|+++...
T Consensus 434 ~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 434 HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 2211 11111122333 563 7999999999999999999887654
No 377
>PHA02713 hypothetical protein; Provisional
Probab=97.98 E-value=0.0012 Score=66.17 Aligned_cols=202 Identities=10% Similarity=0.103 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCeeE--eecCCCCceEEEEEecCCCCEEEEEeCC------CcEEEEECCCCeEeeeeeecCc--eeEEEE
Q 010470 290 NLYVWDVNSGRVRH--TLTGHTDKVCAVDVSKISSRHVVSAAYD------RTLKVWDLHKGYCVNTIIFHSN--CNALAF 359 (510)
Q Consensus 290 ~i~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~--i~~i~~ 359 (510)
.+..||..+++... .+..... -.+++.. ++.+++.||.+ ..+..||+.++.....-..+.+ -.+++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~-~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~- 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHII-NYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA- 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCcccc-ceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE-
Confidence 46677776654322 1211111 1222322 56777777753 3477899887754322211111 11222
Q ss_pred cCCCCEEEEecCCC-----cEEEEECCCCceee--eecccccccEEEEEEcCCCCEEEEEecCC----------------
Q 010470 360 SMDGQTIFSGHIDG-----NLRLWDIQTGKLLS--EVAAHSLAAVTSISLSRSGNIILTSGRDN---------------- 416 (510)
Q Consensus 360 ~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~--~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---------------- 416 (510)
..+|...+.|+.+| .+..||..+..-.. .+.... .....+. -+|.+.+.|+.++
T Consensus 349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r-~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~ 425 (557)
T PHA02713 349 VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIAL-SSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDME 425 (557)
T ss_pred EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccc-ccccEEE--ECCEEEEEeCCCccccccccccccccccc
Confidence 23677778887654 48889987654221 111111 1111222 2577777776542
Q ss_pred -------cEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC------CeEEEEeCCC---cceeecccc
Q 010470 417 -------LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD------GSVYIWSISK---ADIVRTLKE 480 (510)
Q Consensus 417 -------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d------g~i~iwd~~~---~~~~~~~~~ 480 (510)
.+..||..+.+-...-......... ....-+|+..+.|+.+ ..+..||..+ ...+..++.
T Consensus 426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~----~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~ 501 (557)
T PHA02713 426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP----GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES 501 (557)
T ss_pred ccccccceEEEECCCCCeEeecCCCCcccccC----cEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc
Confidence 4677887765432211111111111 1223457777777654 2467899876 334444543
Q ss_pred cCcCEEEEEEeCCCCcEEEeeCCC
Q 010470 481 HTAPVLSCSWSGLGKPLASADKNG 504 (510)
Q Consensus 481 ~~~~v~~~~~~~~~~~l~s~~~dg 504 (510)
.......+++ +|+..++||.||
T Consensus 502 ~r~~~~~~~~--~~~iyv~Gg~~~ 523 (557)
T PHA02713 502 RLSALHTILH--DNTIMMLHCYES 523 (557)
T ss_pred ccccceeEEE--CCEEEEEeeecc
Confidence 3333333344 677888898887
No 378
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.95 E-value=0.0012 Score=48.98 Aligned_cols=100 Identities=20% Similarity=0.278 Sum_probs=71.6
Q ss_pred eeEEEEec---CC-CEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEe
Q 010470 270 VLDLAITH---DN-RSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV 345 (510)
Q Consensus 270 v~~~~~~~---~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 345 (510)
|+++++.. +| +.|++|+.|..|++|+- ...+..+. -.+.|+++.-.. ...|+.+..+|+|-+|+- ...+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~--~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLG--GGRFAYALANGTVGVYDR--SQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcC--CCEEEEEecCCEEEEEeC--ccee
Confidence 55666643 22 57999999999999973 35666666 456777777655 578999999999999985 4445
Q ss_pred eeeeecCceeEEEEcC-CC---CEEEEecCCCcEE
Q 010470 346 NTIIFHSNCNALAFSM-DG---QTIFSGHIDGNLR 376 (510)
Q Consensus 346 ~~~~~~~~i~~i~~~~-~~---~~l~~~~~dg~i~ 376 (510)
..+.....+.++.+.. ++ ..|++|-.+|.|-
T Consensus 75 WRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 5556666677777654 22 3688898888874
No 379
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.00023 Score=72.18 Aligned_cols=102 Identities=17% Similarity=0.285 Sum_probs=76.4
Q ss_pred CCCEEEEeeCCCeEEEEeCCCC-cceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEE
Q 010470 236 NSARLISGGQDKSIKLWDTNTG-SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCA 314 (510)
Q Consensus 236 ~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 314 (510)
-+..++.|++.|.|-..|+... .+...-....++|++++|+.+|..++.|-.+|.|.+||+..++..+.+..|..+.++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 3557889999999999887643 212222344689999999999999999999999999999999999998877777666
Q ss_pred EEEecC--CCCEEEEEeCCCcEEEEEC
Q 010470 315 VDVSKI--SSRHVVSAAYDRTLKVWDL 339 (510)
Q Consensus 315 i~~~~~--~~~~l~s~~~dg~i~iwd~ 339 (510)
+-+.-. ++..++++...|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 544321 3446777777776 5544
No 380
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.90 E-value=0.0093 Score=56.42 Aligned_cols=89 Identities=16% Similarity=0.199 Sum_probs=60.0
Q ss_pred EEEEecCCCEEEEeeCCCeEEE---EeCCC-----Ccceec----cccc-ccceeEEEEec-----------CCCEEEEE
Q 010470 230 SILFEYNSARLISGGQDKSIKL---WDTNT-----GSLSST----LYGC-LGSVLDLAITH-----------DNRSVIAA 285 (510)
Q Consensus 230 ~~~~s~~~~~l~s~~~dg~i~i---wd~~~-----~~~~~~----~~~~-~~~v~~~~~~~-----------~~~~l~~~ 285 (510)
+++.+|+|+.|+.+..+..+.+ |+... +..... +... ...|+++.|-| |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4678899999999988776665 54311 111111 1111 14677777643 46789999
Q ss_pred eCCCeEEEEEcCCCCeeEeecCCCCceEEEEEec
Q 010470 286 SSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSK 319 (510)
Q Consensus 286 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 319 (510)
..+|.|++|. ++|..+..-.-|..+|..+.+..
T Consensus 86 ~ssG~vrfyt-e~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYT-ENGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEe-ccchHHHHHhcCccceEEEEecc
Confidence 9999999998 46776666666888888887754
No 381
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.89 E-value=0.025 Score=53.75 Aligned_cols=266 Identities=14% Similarity=0.150 Sum_probs=140.6
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCcce--ec-c-cccccceeEEEEec----CCCEEEEEeCCCeEEEEEcCC--CC-----
Q 010470 236 NSARLISGGQDKSIKLWDTNTGSLS--ST-L-YGCLGSVLDLAITH----DNRSVIAASSSNNLYVWDVNS--GR----- 300 (510)
Q Consensus 236 ~~~~l~s~~~dg~i~iwd~~~~~~~--~~-~-~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~iwd~~~--~~----- 300 (510)
+...|++||..|.++||+...+... .. + ..-..+|..+..-+ .....++.-.-..+.||.+.. |.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 3468999999999999998543311 01 0 12346777776532 233344445566788888732 11
Q ss_pred --eeEeecCCC--CceEEEEEecCC----CCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCC
Q 010470 301 --VRHTLTGHT--DKVCAVDVSKIS----SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHID 372 (510)
Q Consensus 301 --~~~~~~~~~--~~v~~i~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 372 (510)
.+..+..|. .....+++-|.+ ..++.+-+.||.+.+|+-+.-.....+...--+..+++.+....|++++.+
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss 195 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSS 195 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCc
Confidence 112222232 223333333322 467888899999999997654433333332235668888888899999988
Q ss_pred CcEEEEECCC--------------------Cc---eeeeecccccccEEEE---EEcCCCCEEEEEecCCcEEEEEcCCc
Q 010470 373 GNLRLWDIQT--------------------GK---LLSEVAAHSLAAVTSI---SLSRSGNIILTSGRDNLHNLFDIRSL 426 (510)
Q Consensus 373 g~i~i~d~~~--------------------~~---~~~~~~~~~~~~i~~i---~~~~~~~~l~~~~~d~~i~i~d~~~~ 426 (510)
..+..|.... ++ +-..+... ..+..| .++.....+++-+. ..+.+++. +|
T Consensus 196 ~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlG--E~~l~i~v~~~~~~~~~IvvLge-r~Lf~l~~-~G 271 (418)
T PF14727_consen 196 WTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLG--EQALDIQVVRFSSSESDIVVLGE-RSLFCLKD-NG 271 (418)
T ss_pred eeEEEecHHHhhhccccccccccccccccccccccceeEEECC--ceeEEEEEEEcCCCCceEEEEec-ceEEEEcC-CC
Confidence 8888886421 11 11111111 233333 33323333333332 23444443 34
Q ss_pred eeeeEeecCCCeeecCceeEEEcCCC---CEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEE---EeCCCCcEEEe
Q 010470 427 EVCGSLRATGNRVASNWSRSCISPDE---SYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCS---WSGLGKPLASA 500 (510)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~---~~~~~~~l~s~ 500 (510)
......+....+.......+....++ ..+++++.++++.||. ..+++...+....|| ++. |..-...|++-
T Consensus 272 ~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~l~~~PV-al~v~~~~~~~G~IV~L 348 (418)
T PF14727_consen 272 SLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQLPHVPV-ALSVANFNGLKGLIVSL 348 (418)
T ss_pred eEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEecCCCCCCE-EEEecccCCCCceEEEE
Confidence 44333333333222111111111222 2488889999999996 344444444333343 332 33334478888
Q ss_pred eCCCeEEE
Q 010470 501 DKNGVVCV 508 (510)
Q Consensus 501 ~~dg~i~i 508 (510)
+.+|.+.+
T Consensus 349 s~~G~L~v 356 (418)
T PF14727_consen 349 SDEGQLSV 356 (418)
T ss_pred cCCCcEEE
Confidence 88888765
No 382
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.88 E-value=0.0013 Score=65.82 Aligned_cols=216 Identities=15% Similarity=0.153 Sum_probs=116.8
Q ss_pred CCEEEEEeCC------CeEEEEEcCCCCeeEeecC-CCCceEEEEEecCCCCEEEEEeCC------CcEEEEECCCCeEe
Q 010470 279 NRSVIAASSS------NNLYVWDVNSGRVRHTLTG-HTDKVCAVDVSKISSRHVVSAAYD------RTLKVWDLHKGYCV 345 (510)
Q Consensus 279 ~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~ 345 (510)
+..+++|+.+ ..+..||..++.......- ....-.++++. ++.+.++||.| .++..||...++..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 4445555544 3677888877643322211 22223444444 46888889888 36788898887744
Q ss_pred eeeeecCc--eeEEEEcCCCCEEEEecCCCc-----EEEEECCCCceeeeecccc-cccEEEEEEcCCCCEEEEEecCC-
Q 010470 346 NTIIFHSN--CNALAFSMDGQTIFSGHIDGN-----LRLWDIQTGKLLSEVAAHS-LAAVTSISLSRSGNIILTSGRDN- 416 (510)
Q Consensus 346 ~~~~~~~~--i~~i~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~- 416 (510)
..-..... -.+++. -+|...++|+.||. +-.||..+.+--..-.... ....... .-+|.+.++|+.++
T Consensus 363 ~~a~M~~~R~~~~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~--~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVA--VLGGKLYIIGGGDGS 439 (571)
T ss_pred ccCCccCccccceeEE-ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEE--EECCEEEEEcCcCCC
Confidence 42222211 112222 27888889998874 7788876654221111111 0112222 23577778887554
Q ss_pred -----cEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCC-----eEEEEeCCCcc--eeecccccCcC
Q 010470 417 -----LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADG-----SVYIWSISKAD--IVRTLKEHTAP 484 (510)
Q Consensus 417 -----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~--~~~~~~~~~~~ 484 (510)
.+..||..+..-...-......... -...-++.+.++|+.|| +|..||..+.+ .+.......+.
T Consensus 440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~~~----g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~ 515 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWTLIAPMNTRRSGF----GVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA 515 (571)
T ss_pred ccccceEEEEcCCCCceeecCCcccccccc----eEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccc
Confidence 5677888765443222222111111 12234677888888776 37778877654 33333333333
Q ss_pred EEEEEEeCCCCcEEEeeCCCe
Q 010470 485 VLSCSWSGLGKPLASADKNGV 505 (510)
Q Consensus 485 v~~~~~~~~~~~l~s~~~dg~ 505 (510)
+..+.+ ++...++||.||.
T Consensus 516 ~g~~~~--~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 516 VGVVVL--GGKLYAVGGFDGN 534 (571)
T ss_pred ccEEEE--CCEEEEEecccCc
Confidence 333333 5667778887765
No 383
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.82 E-value=0.027 Score=52.64 Aligned_cols=223 Identities=17% Similarity=0.192 Sum_probs=105.8
Q ss_pred CCCEEEEee-CCCeEEEEeCCCC----cceecccc-------cccceeEEEEecCCCEEEEEeC------CCeEEEEEcC
Q 010470 236 NSARLISGG-QDKSIKLWDTNTG----SLSSTLYG-------CLGSVLDLAITHDNRSVIAASS------SNNLYVWDVN 297 (510)
Q Consensus 236 ~~~~l~s~~-~dg~i~iwd~~~~----~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~ 297 (510)
+.++|+..+ .++.|.|+|+.+. +..+.+.. .-.....+..-|+|..++++-. -|.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 355676666 6789999998743 22233321 1123344555688988888632 2578888887
Q ss_pred CCCeeEeecCCC---CceEEEEEecCCCCEEEEEeC--------------------CCcEEEEECCCCeEeeeeeecCc-
Q 010470 298 SGRVRHTLTGHT---DKVCAVDVSKISSRHVVSAAY--------------------DRTLKVWDLHKGYCVNTIIFHSN- 353 (510)
Q Consensus 298 ~~~~~~~~~~~~---~~v~~i~~~~~~~~~l~s~~~--------------------dg~i~iwd~~~~~~~~~~~~~~~- 353 (510)
+.+......... ..-+.+-|.| ..+.++|+.. ..++.+||+.+.+.++++.....
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp T--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred cccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 777776665422 2345677777 6777777643 46899999999999999987642
Q ss_pred --eeEEEEc--CCCCEEEEec-CCCcEEEEEC-CCCc----eeeeeccc--------c--------cccEEEEEEcCCCC
Q 010470 354 --CNALAFS--MDGQTIFSGH-IDGNLRLWDI-QTGK----LLSEVAAH--------S--------LAAVTSISLSRSGN 407 (510)
Q Consensus 354 --i~~i~~~--~~~~~l~~~~-~dg~i~i~d~-~~~~----~~~~~~~~--------~--------~~~i~~i~~~~~~~ 407 (510)
+..+.|. |+..+=++|+ -.++|..|-- ..+. .+..+... . ..-|+.|.+|.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 5566664 4444444333 3344544432 3332 12222111 0 14589999999999
Q ss_pred EEEEEe-cCCcEEEEEcCC---ceeeeEeecC------------CCeeecCceeEEEcCCCCEEEEEc
Q 010470 408 IILTSG-RDNLHNLFDIRS---LEVCGSLRAT------------GNRVASNWSRSCISPDESYVAAGS 459 (510)
Q Consensus 408 ~l~~~~-~d~~i~i~d~~~---~~~~~~~~~~------------~~~~~~~~~~~~~s~~~~~l~~~~ 459 (510)
+|++++ ..|.++.||+.. .+.+..+... +..+......+.+|.||+.|+..+
T Consensus 325 fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 988776 578999999975 2333332211 112222334578899999888765
No 384
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.82 E-value=0.013 Score=57.00 Aligned_cols=219 Identities=13% Similarity=0.135 Sum_probs=112.8
Q ss_pred ceeEEEEecCCCEEEEEe-CCC----eEEEEEcCCCCeeEee-cCCCCceEEEEEecCCCCEEEEEeCC-----------
Q 010470 269 SVLDLAITHDNRSVIAAS-SSN----NLYVWDVNSGRVRHTL-TGHTDKVCAVDVSKISSRHVVSAAYD----------- 331 (510)
Q Consensus 269 ~v~~~~~~~~~~~l~~~~-~d~----~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~s~~~d----------- 331 (510)
.+..+.++|+|++++.+- ..| .++++|+.+|+.+... .. .....+.|.+ ++..|+....+
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECT-TSSEEEEEECSTTTSS-CCGCC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeC-CCCEEEEEEeCcccccccCCCC
Confidence 344678999999988763 333 6999999999765432 21 1122389998 54444443322
Q ss_pred CcEEEEECCCCeEe--eeeeec--Cc-eeEEEEcCCCCEEEEecC---C-CcEEEEECCCC----ceeeeecccccccEE
Q 010470 332 RTLKVWDLHKGYCV--NTIIFH--SN-CNALAFSMDGQTIFSGHI---D-GNLRLWDIQTG----KLLSEVAAHSLAAVT 398 (510)
Q Consensus 332 g~i~iwd~~~~~~~--~~~~~~--~~-i~~i~~~~~~~~l~~~~~---d-g~i~i~d~~~~----~~~~~~~~~~~~~i~ 398 (510)
..|+.|.+.++..- ..+... .. ...+..++++++++.... + ..+++.|+..+ .....+.....+...
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~ 281 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY 281 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence 24788888765432 222222 22 557888999999875332 2 45888888764 233333333313333
Q ss_pred EEEEcCCCCEEEEEec---CCcEEEEEcCCcee---eeEeecCCCeeecCceeEEEcCCCCEEEE-EcCCC--eEEEEeC
Q 010470 399 SISLSRSGNIILTSGR---DNLHNLFDIRSLEV---CGSLRATGNRVASNWSRSCISPDESYVAA-GSADG--SVYIWSI 469 (510)
Q Consensus 399 ~i~~~~~~~~l~~~~~---d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-~~~dg--~i~iwd~ 469 (510)
.+... .+.+++.+.. ++.|.-.++.+... ...+..+.....- ..+...+.+|+. ...++ .|+++++
T Consensus 282 ~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l----~~~~~~~~~Lvl~~~~~~~~~l~v~~~ 356 (414)
T PF02897_consen 282 YVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSL----EDVSLFKDYLVLSYRENGSSRLRVYDL 356 (414)
T ss_dssp EEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEE----EEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred EEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeE----EEEEEECCEEEEEEEECCccEEEEEEC
Confidence 34333 3334443332 34666677776542 2233333221111 233444555444 44444 5889998
Q ss_pred CCcceeecccc-cCcCEEEEEEeCCCC
Q 010470 470 SKADIVRTLKE-HTAPVLSCSWSGLGK 495 (510)
Q Consensus 470 ~~~~~~~~~~~-~~~~v~~~~~~~~~~ 495 (510)
..+.....+.. -.+.|..+...++++
T Consensus 357 ~~~~~~~~~~~p~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 357 DDGKESREIPLPEAGSVSGVSGDFDSD 383 (414)
T ss_dssp T-TEEEEEEESSSSSEEEEEES-TT-S
T ss_pred CCCcEEeeecCCcceEEeccCCCCCCC
Confidence 83333333322 234456666555555
No 385
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.78 E-value=0.06 Score=54.97 Aligned_cols=240 Identities=11% Similarity=0.146 Sum_probs=133.4
Q ss_pred cceEEEEEec-C---CCEEEEee---CCCeEEEEeCCCCcc---eecccccccceeEEE--EecC-CCEEEEEeCCCeEE
Q 010470 226 GGCASILFEY-N---SARLISGG---QDKSIKLWDTNTGSL---SSTLYGCLGSVLDLA--ITHD-NRSVIAASSSNNLY 292 (510)
Q Consensus 226 ~~v~~~~~s~-~---~~~l~s~~---~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~--~~~~-~~~l~~~~~d~~i~ 292 (510)
+||..++.-. + +..++|++ .||++++....-+-. ...+.| ...++.+. ++++ ..+++.+-. +.-+
T Consensus 354 gPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~-~eTr 431 (1096)
T KOG1897|consen 354 GPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFI-SETR 431 (1096)
T ss_pred cceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEec-cceE
Confidence 5787777643 2 23566654 388999986432211 122333 34556665 3332 124444433 3344
Q ss_pred EEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCC
Q 010470 293 VWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHID 372 (510)
Q Consensus 293 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 372 (510)
+..+...-......+.......+.++...++.++=.. ...|++++-. .....+..+..++....+.+...++.++.+
T Consensus 432 vl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~ 508 (1096)
T KOG1897|consen 432 VLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVT-SNSIRLVSSA--GLRSEWRPPGKITIGVVSANASQVVVAGGG 508 (1096)
T ss_pred EEEEccceEEeccccccccCceEEEEccCCceEEEEe-cccEEEEcch--hhhhcccCCCceEEEEEeecceEEEEecCc
Confidence 5555433122223344444555555554555544443 3467777654 233444455555555555666677878777
Q ss_pred CcEEEEECCCCceeeeecccccccEEEEEEcCCC------CEEEEEecCCcEEEE-EcCCceeeeEeecCCCeeecCcee
Q 010470 373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSG------NIILTSGRDNLHNLF-DIRSLEVCGSLRATGNRVASNWSR 445 (510)
Q Consensus 373 g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~------~~l~~~~~d~~i~i~-d~~~~~~~~~~~~~~~~~~~~~~~ 445 (510)
+.+...++..+.............|.|+.++|-| +++++|..+..+.+. -+.+.............+...+..
T Consensus 509 ~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~ 588 (1096)
T KOG1897|consen 509 LALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILL 588 (1096)
T ss_pred cEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheee
Confidence 8888888776653222222223689999999742 268888777654443 333444433333333444444444
Q ss_pred EEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470 446 SCISPDESYVAAGSADGSVYIWSIS 470 (510)
Q Consensus 446 ~~~s~~~~~l~~~~~dg~i~iwd~~ 470 (510)
.++-.|..+|.++..||.+.-|-+.
T Consensus 589 ~~~e~d~~yLlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 589 TTFEGDIHYLLVALGDGALLYFVLD 613 (1096)
T ss_pred EEeeccceEEEEEcCCceEEEEEEE
Confidence 5666778999999999988766443
No 386
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.00013 Score=69.48 Aligned_cols=94 Identities=18% Similarity=0.223 Sum_probs=78.0
Q ss_pred CCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-Ccee-EEEEcCCCCEEEEecCCCcEEEEECCCCcee
Q 010470 309 TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCN-ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL 386 (510)
Q Consensus 309 ~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~-~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 386 (510)
...+.-+.|+| .-.+++.+..+|.|.+.-+. .+.+.++..+ .+++ +++|.|||+.|++|-.||+|++.|..++..+
T Consensus 20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 35677889999 88899999999999999887 6777787744 4566 9999999999999999999999999999888
Q ss_pred eeecccccccEEEEEEcC
Q 010470 387 SEVAAHSLAAVTSISLSR 404 (510)
Q Consensus 387 ~~~~~~~~~~i~~i~~~~ 404 (510)
..+.......|.++.|++
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 775433336788888864
No 387
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.0017 Score=60.95 Aligned_cols=140 Identities=14% Similarity=0.178 Sum_probs=96.4
Q ss_pred EEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCE-------EEEecCCCcEEEEECCCCce--eeeeccc--
Q 010470 324 HVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQT-------IFSGHIDGNLRLWDIQTGKL--LSEVAAH-- 392 (510)
Q Consensus 324 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~-------l~~~~~dg~i~i~d~~~~~~--~~~~~~~-- 392 (510)
++.++.....++-.|++.|+.+.....+..|+-+.+.|+.+. -++|-.+..|.-||+|-... +.....+
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 445566677899999999999999999988999999887542 34577788999999984322 1111111
Q ss_pred -ccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470 393 -SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI 469 (510)
Q Consensus 393 -~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~ 469 (510)
......|++-..+ .++++|+.+|.|++||--.......+++.+.++. .+..+.+|++|++.+ +.++.+.++
T Consensus 428 ~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~----hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 428 STKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIK----HVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred ccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCcee----eEEeeccCcEEEEec-ccEEEEEEE
Confidence 1134555555444 4789999999999999743333334445554444 488999999988777 445666664
No 388
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.75 E-value=6.8e-05 Score=44.35 Aligned_cols=37 Identities=32% Similarity=0.574 Sum_probs=33.5
Q ss_pred ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEe
Q 010470 217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWD 253 (510)
Q Consensus 217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 253 (510)
+...+.+|...|.++.|++++..+++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4566778999999999999999999999999999996
No 389
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.74 E-value=0.017 Score=50.22 Aligned_cols=103 Identities=17% Similarity=0.268 Sum_probs=72.6
Q ss_pred CceEEEEEecCCCCEEEEEeCCCc-EEEEECCCCeEeeeeeecCc---eeEEEEcCCCCEEEEecC-----CCcEEEEEC
Q 010470 310 DKVCAVDVSKISSRHVVSAAYDRT-LKVWDLHKGYCVNTIIFHSN---CNALAFSMDGQTIFSGHI-----DGNLRLWDI 380 (510)
Q Consensus 310 ~~v~~i~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~---i~~i~~~~~~~~l~~~~~-----dg~i~i~d~ 380 (510)
..-..+.++|....-++.+-.-|+ ..+||....+...++..... .-.-+|+|||.+|+..-. .|.|-|||.
T Consensus 68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEec
Confidence 334557788866666777666554 56889888776666654322 345678999999987533 478999999
Q ss_pred CCC-ceeeeecccccccEEEEEEcCCCCEEEEEe
Q 010470 381 QTG-KLLSEVAAHSLAAVTSISLSRSGNIILTSG 413 (510)
Q Consensus 381 ~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 413 (510)
+.+ ..+-.+..+. -....+.+.+||+.++...
T Consensus 148 r~~fqrvgE~~t~G-iGpHev~lm~DGrtlvvan 180 (366)
T COG3490 148 REGFQRVGEFSTHG-IGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ccccceecccccCC-cCcceeEEecCCcEEEEeC
Confidence 754 4455666665 5678899999999888764
No 390
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.73 E-value=7.5e-05 Score=44.13 Aligned_cols=38 Identities=45% Similarity=0.745 Sum_probs=33.2
Q ss_pred ceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 473 DIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 473 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
.+...+..|...|.++.|++++..+++++.||.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44556667888999999999999999999999999997
No 391
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.72 E-value=0.0069 Score=60.73 Aligned_cols=185 Identities=18% Similarity=0.195 Sum_probs=101.2
Q ss_pred CceEEEEEecCCCCEEEEEe------CC--CcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCC---------
Q 010470 310 DKVCAVDVSKISSRHVVSAA------YD--RTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHID--------- 372 (510)
Q Consensus 310 ~~v~~i~~~~~~~~~l~s~~------~d--g~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--------- 372 (510)
..+.+.+++| ++..++... .| ..|.+++.. +.. ..+........-.|+|+|..+++....
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4677888999 565555443 23 356666653 322 333333347889999998877765432
Q ss_pred ---CcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEE---EEcCCceeeeEeec---CCCeeecCc
Q 010470 373 ---GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNL---FDIRSLEVCGSLRA---TGNRVASNW 443 (510)
Q Consensus 373 ---g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i---~d~~~~~~~~~~~~---~~~~~~~~~ 443 (510)
+.+++.++..+.... ...+.|..+.|||||..++... ++.|++ -....+. ..+.. -........
T Consensus 427 ~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~~~~ 499 (591)
T PRK13616 427 PATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALTNPREVGPGLGDTA 499 (591)
T ss_pred CCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeecccEEeecccCCcc
Confidence 233333443333222 1125799999999999888766 467766 3433443 11100 000111112
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeCCC-cceeecccc--cCcCEEEEEEeCCCCcEEEeeCCCeEE
Q 010470 444 SRSCISPDESYVAAGSADGSVYIWSISK-ADIVRTLKE--HTAPVLSCSWSGLGKPLASADKNGVVC 507 (510)
Q Consensus 444 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~i~ 507 (510)
..+.|..++.++ ++..++...+|.+.- |.....+.. ...++.+++=+++ .++..+.+|.+.
T Consensus 500 ~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 500 VSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred ccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 347899999865 444444444554332 222222232 3567777877763 455656666554
No 392
>PRK10115 protease 2; Provisional
Probab=97.72 E-value=0.081 Score=54.68 Aligned_cols=240 Identities=8% Similarity=0.052 Sum_probs=120.2
Q ss_pred ceEEEEEecCCCEEEEeeCC-----CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCC------CeEEEEE
Q 010470 227 GCASILFEYNSARLISGGQD-----KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS------NNLYVWD 295 (510)
Q Consensus 227 ~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd 295 (510)
.+..+.+||||++|+.+.+. ..|++.|+.+|..+........ ..++|.+|++.|+.+..+ ..|+.++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 47778999999988765432 3588999988864332222211 459999999877766542 3688888
Q ss_pred cCCC--CeeEeecCCCCceEEEEEecCCCCEEEEEeC---CCcEEEEECC--CCeEeeeeeecCceeEEEEcCCCCEEEE
Q 010470 296 VNSG--RVRHTLTGHTDKVCAVDVSKISSRHVVSAAY---DRTLKVWDLH--KGYCVNTIIFHSNCNALAFSMDGQTIFS 368 (510)
Q Consensus 296 ~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~---dg~i~iwd~~--~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 368 (510)
+.++ +-...+........-..+.+.++.+++..+. ++.+.+++.. ++.....+.....+..-..+..+.+++.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~ 285 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYLR 285 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEEE
Confidence 8887 3333444333333322233325555544332 4578888843 3332222222222221112223333332
Q ss_pred ec---CCCcEEEEECCCCceeeeeccc-ccccEEEEEEcCCCCEEEEEecCCcEEE--EEcCCceeeeEeecCCCeeecC
Q 010470 369 GH---IDGNLRLWDIQTGKLLSEVAAH-SLAAVTSISLSRSGNIILTSGRDNLHNL--FDIRSLEVCGSLRATGNRVASN 442 (510)
Q Consensus 369 ~~---~dg~i~i~d~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~i--~d~~~~~~~~~~~~~~~~~~~~ 442 (510)
.. ....|...++........+..+ ....+..+.+. .+.++++...+|.-.+ ++..+.. ...+........
T Consensus 286 tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~-~~~l~~~~~~~~-- 361 (686)
T PRK10115 286 SNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTRE-VIGIAFDDPAYV-- 361 (686)
T ss_pred EcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCc-eEEecCCCCceE--
Confidence 22 2223444455422222233333 22468888887 3345555555665444 4543332 222221111110
Q ss_pred ceeEEEc--CCCC-EEEEEcC---CCeEEEEeCCCcc
Q 010470 443 WSRSCIS--PDES-YVAAGSA---DGSVYIWSISKAD 473 (510)
Q Consensus 443 ~~~~~~s--~~~~-~l~~~~~---dg~i~iwd~~~~~ 473 (510)
..+.++ +++. ++++.++ -+.++.||+.+++
T Consensus 362 -~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 362 -TWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred -eeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 112233 4443 4443332 4678888887654
No 393
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.71 E-value=0.0098 Score=59.67 Aligned_cols=170 Identities=18% Similarity=0.194 Sum_probs=95.1
Q ss_pred CCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe------CCC--eEEEEEcCCCCeeEeecCCCCceEEEEE
Q 010470 246 DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS------SSN--NLYVWDVNSGRVRHTLTGHTDKVCAVDV 317 (510)
Q Consensus 246 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~--~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 317 (510)
+|.+.-.+-..-..+.-..+....+.+.+++|+|+.++... .|+ .|.+++. .+.......+ ...+.-.|
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsW 404 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSW 404 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceE
Confidence 56555443222222222223345678899999999887765 243 4555554 2333222232 23778889
Q ss_pred ecCCCCEEEEEeC------------CCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEE---EECCC
Q 010470 318 SKISSRHVVSAAY------------DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRL---WDIQT 382 (510)
Q Consensus 318 ~~~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i---~d~~~ 382 (510)
+| ++..+++... .+.+.+.++..+.... .....|..+.|+|||..++... +|.|++ -....
T Consensus 405 sp-DG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~ 480 (591)
T PRK13616 405 SL-DADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTED 480 (591)
T ss_pred CC-CCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCC
Confidence 98 5555555432 2344444554443322 3345699999999999888765 477777 44344
Q ss_pred Cce-e---eeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEc
Q 010470 383 GKL-L---SEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDI 423 (510)
Q Consensus 383 ~~~-~---~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~ 423 (510)
|.. + ..+.......+.++.|.+++.++ ++..++...+|.+
T Consensus 481 G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 481 GQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred CceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 431 1 11222221346889999998865 4444444444443
No 394
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.70 E-value=0.019 Score=50.32 Aligned_cols=192 Identities=12% Similarity=0.148 Sum_probs=122.3
Q ss_pred cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec--CceeEEEEcCCCCEEEEecCCCcEEEEECCCC
Q 010470 306 TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH--SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTG 383 (510)
Q Consensus 306 ~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~ 383 (510)
.+-...+.++.|+| +.+.|++......-.||=...|..+.++... +..-.+.+.-+|.+.++--.++.++++.+...
T Consensus 82 ~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 44455699999999 6666666666666666666679999888655 45778888888888888888999998877654
Q ss_pred ceeeeec---------ccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeec------CCCeeecCceeEEE
Q 010470 384 KLLSEVA---------AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRA------TGNRVASNWSRSCI 448 (510)
Q Consensus 384 ~~~~~~~---------~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~~~~~~~~~~~ 448 (510)
..+..+. .+.....-.++|+|....|+.+-.-+-+.||............. ........++.+.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 3222111 12136788999999999988888888777777653221111111 11112234556777
Q ss_pred cC-CCCEEEEEcCCCeEEEEeCCCcceeecccc----c--C---cCEEEEEEeCCCCcEEE
Q 010470 449 SP-DESYVAAGSADGSVYIWSISKADIVRTLKE----H--T---APVLSCSWSGLGKPLAS 499 (510)
Q Consensus 449 s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~--~---~~v~~~~~~~~~~~l~s 499 (510)
.+ .+.+++-+..++.+.-.|.. |.++..+.. | . ...-+++..++|..-++
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv 300 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV 300 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence 76 45666667777777777754 443333321 1 1 12356788777764333
No 395
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.68 E-value=0.034 Score=49.13 Aligned_cols=221 Identities=12% Similarity=0.144 Sum_probs=129.2
Q ss_pred ceeEEEEecCCCEEEEEeCCCeEEEEEcC------CC-CeeEeecC-----CCCceEEEEEecCC-----------CCEE
Q 010470 269 SVLDLAITHDNRSVIAASSSNNLYVWDVN------SG-RVRHTLTG-----HTDKVCAVDVSKIS-----------SRHV 325 (510)
Q Consensus 269 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~------~~-~~~~~~~~-----~~~~v~~i~~~~~~-----------~~~l 325 (510)
.-+.|+++|.+...++....+...+||.. .. .++-++.. .....+.+.|+... ...+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45789999999988888888999999986 11 23334432 12456777776521 1236
Q ss_pred EEEeCCCcEEEEECCCCeE-----eeeeeec--Cc-eeEEEEcC--CCCEEEEe-cCCCcEEEEECCCCceee--eeccc
Q 010470 326 VSAAYDRTLKVWDLHKGYC-----VNTIIFH--SN-CNALAFSM--DGQTIFSG-HIDGNLRLWDIQTGKLLS--EVAAH 392 (510)
Q Consensus 326 ~s~~~dg~i~iwd~~~~~~-----~~~~~~~--~~-i~~i~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~--~~~~~ 392 (510)
+.++.||+|.-|...-+.. ...+... .. ...+++.. .+.+|+.. -..++|.+||-.-.+... .+...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 7788899999998543222 1111111 11 34555543 35566544 467899999854322211 11111
Q ss_pred c---c------------ccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcC------C
Q 010470 393 S---L------------AAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP------D 451 (510)
Q Consensus 393 ~---~------------~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~------~ 451 (510)
. . --|+-..-.++++.=+.+..-|.|-+||+. +..++.+ .+......+|- ++..| .
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~-as~g~LNaPWG-~a~APa~FG~~s 260 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRV-ASSGRLNAPWG-LAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEe-ccCCcccCCce-eeeChhhhCCCC
Confidence 0 0 011112222333333334455789999985 4555555 33444444443 55543 5
Q ss_pred CCEEEEEcCCCeEEEEeCCCcceeecccccC------cCEEEEEEeC
Q 010470 452 ESYVAAGSADGSVYIWSISKADIVRTLKEHT------APVLSCSWSG 492 (510)
Q Consensus 452 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~v~~~~~~~ 492 (510)
|.+|+---.||+|..||..++..+..+.... ..++.++|..
T Consensus 261 g~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 6777777779999999999998877776533 2457788865
No 396
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00026 Score=67.57 Aligned_cols=92 Identities=10% Similarity=0.099 Sum_probs=80.7
Q ss_pred ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceE-EEEEecCCCCEEEEEeCCCcEEEEECCCCeEe
Q 010470 267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVC-AVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV 345 (510)
Q Consensus 267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 345 (510)
...+.-+.|+|.-..++.+..+|.|.+..++ .+.+.++..|...++ +++|.| +++.++.|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 4467789999999999999999999999988 778888887888887 999999 7999999999999999999999888
Q ss_pred ee--eeecCceeEEEEc
Q 010470 346 NT--IIFHSNCNALAFS 360 (510)
Q Consensus 346 ~~--~~~~~~i~~i~~~ 360 (510)
.. +....++.++-|.
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 87 4555668888886
No 397
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.66 E-value=0.023 Score=49.84 Aligned_cols=163 Identities=13% Similarity=0.198 Sum_probs=107.7
Q ss_pred ccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCC-CCceEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 010470 263 LYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGH-TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK 341 (510)
Q Consensus 263 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~ 341 (510)
+.+-...+.++.|+|+.+.|++..+...-.||=-..|+.+.++.-. -...-.|.+.. ++.++++--.++.+.++.+..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcC
Confidence 3455566999999999999999998888778766779988887521 22334566765 666777777788888887765
Q ss_pred CeEeee-----eee------cCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeee---cccc------cccEEEEE
Q 010470 342 GYCVNT-----IIF------HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEV---AAHS------LAAVTSIS 401 (510)
Q Consensus 342 ~~~~~~-----~~~------~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~------~~~i~~i~ 401 (510)
+..+.. +.. +...-.++|+|.+..|+.+-...-+.||....+...... ..+. ...+.++.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 432211 111 233678999998888888887777777766433211111 1110 13467788
Q ss_pred EcCC-CCEEEEEecCCcEEEEEcCCc
Q 010470 402 LSRS-GNIILTSGRDNLHNLFDIRSL 426 (510)
Q Consensus 402 ~~~~-~~~l~~~~~d~~i~i~d~~~~ 426 (510)
|++. +.+++.+..++.+.-.|....
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC
Confidence 8864 556666777777777776543
No 398
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.60 E-value=0.036 Score=57.33 Aligned_cols=195 Identities=15% Similarity=0.144 Sum_probs=123.3
Q ss_pred CCEEEEeeCCCeEEEEeCCCCcceeccccccc--------ceeEEEEe----------------cCCCEEEEEeCCCeEE
Q 010470 237 SARLISGGQDKSIKLWDTNTGSLSSTLYGCLG--------SVLDLAIT----------------HDNRSVIAASSSNNLY 292 (510)
Q Consensus 237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------~v~~~~~~----------------~~~~~l~~~~~d~~i~ 292 (510)
+..++.++.++.|.-.|..+|+.+..+..... ....+.+. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 56788888889999999999988766543221 01223332 1345788899999999
Q ss_pred EEEcCCCCeeEeecCCCCceE-------------EEEEecC-CCCEEEEEeC----------CCcEEEEECCCCeEeeee
Q 010470 293 VWDVNSGRVRHTLTGHTDKVC-------------AVDVSKI-SSRHVVSAAY----------DRTLKVWDLHKGYCVNTI 348 (510)
Q Consensus 293 iwd~~~~~~~~~~~~~~~~v~-------------~i~~~~~-~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~ 348 (510)
-.|..+|+.+..+.. .+.|. .+.-.|. .+..+++|+. +|.|+-+|.++|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998877642 11110 0111110 2345666643 688999999999988876
Q ss_pred eecC------------------ce-eEEEEcCCCCEEEEec------------------CCCcEEEEECCCCceeeeecc
Q 010470 349 IFHS------------------NC-NALAFSMDGQTIFSGH------------------IDGNLRLWDIQTGKLLSEVAA 391 (510)
Q Consensus 349 ~~~~------------------~i-~~i~~~~~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~~~~ 391 (510)
.... .+ ..+++++....++.+. ..+.|.-.|.++|+....+..
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 5320 01 2345555544444322 134577778889988887765
Q ss_pred cc-c-------ccEEEEEEcC-CCC---EEEEEecCCcEEEEEcCCceeeeEe
Q 010470 392 HS-L-------AAVTSISLSR-SGN---IILTSGRDNLHNLFDIRSLEVCGSL 432 (510)
Q Consensus 392 ~~-~-------~~i~~i~~~~-~~~---~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (510)
.+ . ....-+.+.. +|. .++.++.+|.++++|.++++.+...
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 22 0 1122233333 553 7899999999999999998877653
No 399
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.59 E-value=0.047 Score=51.12 Aligned_cols=223 Identities=16% Similarity=0.132 Sum_probs=105.6
Q ss_pred CCCEEEEEe-CCCeEEEEEcCCC----CeeEeecC---CC----CceEEEEEecCCCCEEEEEeC------CCcEEEEEC
Q 010470 278 DNRSVIAAS-SSNNLYVWDVNSG----RVRHTLTG---HT----DKVCAVDVSKISSRHVVSAAY------DRTLKVWDL 339 (510)
Q Consensus 278 ~~~~l~~~~-~d~~i~iwd~~~~----~~~~~~~~---~~----~~v~~i~~~~~~~~~l~s~~~------dg~i~iwd~ 339 (510)
+.++|+..+ ..+.|+|+|+.+. +..+.+.. +. .....+...| ++.+++|+-. -|.+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcC
Confidence 466788777 6789999998743 23344332 11 1223344445 6777777532 357888888
Q ss_pred CCCeEeeeeeecCc----eeEEEEcCCCCEEEEecC--------------------CCcEEEEECCCCceeeeecccccc
Q 010470 340 HKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHI--------------------DGNLRLWDIQTGKLLSEVAAHSLA 395 (510)
Q Consensus 340 ~~~~~~~~~~~~~~----i~~i~~~~~~~~l~~~~~--------------------dg~i~i~d~~~~~~~~~~~~~~~~ 395 (510)
++............ -..+-+.|..+.+++... ..++.+||+.+.+.++.+.....+
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 87776666654322 467778888887776542 347999999999999998876433
Q ss_pred -cEEEEEEcCC--CCEEEEE-ecCCcEEEEEc-CCce--eeeEeecCCC---------------eeecCceeEEEcCCCC
Q 010470 396 -AVTSISLSRS--GNIILTS-GRDNLHNLFDI-RSLE--VCGSLRATGN---------------RVASNWSRSCISPDES 453 (510)
Q Consensus 396 -~i~~i~~~~~--~~~l~~~-~~d~~i~i~d~-~~~~--~~~~~~~~~~---------------~~~~~~~~~~~s~~~~ 453 (510)
.+..|.|..+ ..+=+++ --.+.|..|-- ..+. ....+..... .+..-++.+.+|.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 4556777544 4443333 33444544433 3222 1112211111 1123456688999999
Q ss_pred EEEEEcC-CCeEEEEeCCCcc---eeeccc----------------ccCcCEEEEEEeCCCCcEEEee
Q 010470 454 YVAAGSA-DGSVYIWSISKAD---IVRTLK----------------EHTAPVLSCSWSGLGKPLASAD 501 (510)
Q Consensus 454 ~l~~~~~-dg~i~iwd~~~~~---~~~~~~----------------~~~~~v~~~~~~~~~~~l~s~~ 501 (510)
+|+.++. .|.|+.||+.... ++..+. .-.+...-+..|-||+.|...+
T Consensus 325 fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 9887665 8999999997632 222211 0122346677888888776543
No 400
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.58 E-value=0.048 Score=48.29 Aligned_cols=209 Identities=14% Similarity=0.155 Sum_probs=125.5
Q ss_pred ceEEEEEecCCCEEEEeeCCCeEEEEeCCC-------Ccceecccc-----cccceeEEEEecCCC------------EE
Q 010470 227 GCASILFEYNSARLISGGQDKSIKLWDTNT-------GSLSSTLYG-----CLGSVLDLAITHDNR------------SV 282 (510)
Q Consensus 227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~-----~~~~v~~~~~~~~~~------------~l 282 (510)
--+.|+|+|.+.+-++....+...+||.+. ..++.++.. ..+..+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 357899999998888888889999999861 122333331 234677888875333 36
Q ss_pred EEEeCCCeEEEEEcCCCCe-----eEeec-CCCCce-EEEEEecC-CCCEEE-EEeCCCcEEEEECCCCeEe--eeeeec
Q 010470 283 IAASSSNNLYVWDVNSGRV-----RHTLT-GHTDKV-CAVDVSKI-SSRHVV-SAAYDRTLKVWDLHKGYCV--NTIIFH 351 (510)
Q Consensus 283 ~~~~~d~~i~iwd~~~~~~-----~~~~~-~~~~~v-~~i~~~~~-~~~~l~-s~~~dg~i~iwd~~~~~~~--~~~~~~ 351 (510)
+.++.||+|.-|...-+.. ...+. .....| ..+++... .+++|+ +--..+.|.|||-.-.... ..+..+
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 7788999999998532222 12222 112333 34555432 234444 4445789999986422211 001100
Q ss_pred -----C-c-----------eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccc-ccccEEEEEEcC------CCC
Q 010470 352 -----S-N-----------CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH-SLAAVTSISLSR------SGN 407 (510)
Q Consensus 352 -----~-~-----------i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~i~~i~~~~------~~~ 407 (510)
. + |+...-.++++.=+.|-.-|.|-+||+ .|..++++... .......|+..| .|.
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 0 0 111122233333334555689999997 78888877433 224566677655 577
Q ss_pred EEEEEecCCcEEEEEcCCceeeeEeecCC
Q 010470 408 IILTSGRDNLHNLFDIRSLEVCGSLRATG 436 (510)
Q Consensus 408 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 436 (510)
+|+---.||+|..||..++..+..+....
T Consensus 263 lLVGNFGDG~InaFD~~sG~~~g~L~~~~ 291 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGAQLGQLLDPD 291 (336)
T ss_pred eEEeecCCceeEEecCCCCceeeeecCCC
Confidence 88888889999999999888877776543
No 401
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=97.56 E-value=0.0014 Score=43.29 Aligned_cols=58 Identities=17% Similarity=0.201 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 81 SSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEM 138 (510)
Q Consensus 81 ~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~ 138 (510)
.++++.+.+.-+.-++++++.++++++.+...+.+++++.+..+..|+++++..+..+
T Consensus 12 ~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~l 69 (70)
T PF08606_consen 12 TLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAEL 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhc
Confidence 3455566666667779999999999999999999999999999999999999887654
No 402
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.53 E-value=0.066 Score=48.65 Aligned_cols=271 Identities=12% Similarity=0.083 Sum_probs=121.4
Q ss_pred cceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecc--ccc---ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC
Q 010470 226 GGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTL--YGC---LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR 300 (510)
Q Consensus 226 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 300 (510)
.++..|.|..+..-+++|. .+.| +-..+.|+.-... ... .-...++.|..+ ..++ ++..+. .+...+.|+
T Consensus 17 ~~l~dV~F~d~~~G~~VG~-~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~i-vG~~g~-ll~T~DgG~ 91 (302)
T PF14870_consen 17 KPLLDVAFVDPNHGWAVGA-YGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWI-VGEPGL-LLHTTDGGK 91 (302)
T ss_dssp S-EEEEEESSSS-EEEEET-TTEE-EEESSTTSS-EE-----S-----EEEEEEEETT-EEEE-EEETTE-EEEESSTTS
T ss_pred CceEEEEEecCCEEEEEec-CCEE-EEECCCCccccccccCCCccceeeEEEEEecCC-ceEE-EcCCce-EEEecCCCC
Confidence 4788999985555555554 5543 2222333321111 111 123566777643 3344 444453 333444454
Q ss_pred eeEeec---CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee--ecCceeEEEEcCCCCEEEEecCCCcE
Q 010470 301 VRHTLT---GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII--FHSNCNALAFSMDGQTIFSGHIDGNL 375 (510)
Q Consensus 301 ~~~~~~---~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i 375 (510)
.-..+. .-......+.... ++ .+...+..|.|+.=. ..|+.=..+. ....+..+..+++|.+++++......
T Consensus 92 tW~~v~l~~~lpgs~~~i~~l~-~~-~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~ 168 (302)
T PF14870_consen 92 TWERVPLSSKLPGSPFGITALG-DG-SAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFY 168 (302)
T ss_dssp S-EE----TT-SS-EEEEEEEE-TT-EEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEE
T ss_pred CcEEeecCCCCCCCeeEEEEcC-CC-cEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEE
Confidence 332221 1223334444433 23 333334445443322 2232222222 22457888889999999888765555
Q ss_pred EEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEc-CCceeeeEeecCCCeeecCceeEEEcCCCCE
Q 010470 376 RLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDI-RSLEVCGSLRATGNRVASNWSRSCISPDESY 454 (510)
Q Consensus 376 ~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 454 (510)
.-||.-... -..........|.++.|+|++.+.+++ ..|.|++=+. ........-..........+..+++.+++..
T Consensus 169 ~s~~~G~~~-w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~ 246 (302)
T PF14870_consen 169 SSWDPGQTT-WQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEI 246 (302)
T ss_dssp EEE-TT-SS--EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-E
T ss_pred EEecCCCcc-ceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCE
Confidence 677743221 222222223789999999998876655 8888888772 2222221111111111222455789988888
Q ss_pred EEEEcCCCeEEEEeCCCcceeeccc---ccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 455 VAAGSADGSVYIWSISKADIVRTLK---EHTAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 455 l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
.++|+ .|.+ +...+.|+.-..-+ .-...+..+.|.++.+ -...+.+|.|--|
T Consensus 247 wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~-gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 247 WAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK-GFVLGQDGVLLRY 301 (302)
T ss_dssp EEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTE-EEEE-STTEEEEE
T ss_pred EEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCc-eEEECCCcEEEEe
Confidence 77766 4533 34445555433322 2345678888876544 4445578887655
No 403
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.50 E-value=0.021 Score=48.16 Aligned_cols=142 Identities=14% Similarity=0.198 Sum_probs=90.2
Q ss_pred cceeEEEEecCCCEEEEEeCC---------CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEE
Q 010470 268 GSVLDLAITHDNRSVIAASSS---------NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD 338 (510)
Q Consensus 268 ~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd 338 (510)
...++-..+|+|+++.-.-.| |.++.|-. +..+..+...-.--..++|......+.++-+.+-+|.-||
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence 345566778999984322222 44555532 2222222223334466888864445556666778887787
Q ss_pred --CCCCe-----Eeeeeeec-----CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcC-C
Q 010470 339 --LHKGY-----CVNTIIFH-----SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSR-S 405 (510)
Q Consensus 339 --~~~~~-----~~~~~~~~-----~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~-~ 405 (510)
..+|. .+..+... ..+..+++..+|++.++.-..|+|..+|+.+|+.+..+..+. ..++|++|-- +
T Consensus 187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt-~qitsccFgGkn 265 (310)
T KOG4499|consen 187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPT-PQITSCCFGGKN 265 (310)
T ss_pred cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCC-CceEEEEecCCC
Confidence 55543 22222221 125567777789999998899999999999999999999886 8899999964 3
Q ss_pred CCEEEEE
Q 010470 406 GNIILTS 412 (510)
Q Consensus 406 ~~~l~~~ 412 (510)
-..+++.
T Consensus 266 ~d~~yvT 272 (310)
T KOG4499|consen 266 LDILYVT 272 (310)
T ss_pred ccEEEEE
Confidence 3444444
No 404
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.49 E-value=0.099 Score=49.78 Aligned_cols=143 Identities=14% Similarity=0.183 Sum_probs=87.2
Q ss_pred CCEEEEEeCCCeEEEEEcCCCC-----eeEeecCCCCceEEEEEecC---CCCEEEEEeCCCcEEEEECCC--Ce-----
Q 010470 279 NRSVIAASSSNNLYVWDVNSGR-----VRHTLTGHTDKVCAVDVSKI---SSRHVVSAAYDRTLKVWDLHK--GY----- 343 (510)
Q Consensus 279 ~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~v~~i~~~~~---~~~~l~s~~~dg~i~iwd~~~--~~----- 343 (510)
...|++|+..|.++||+...+. .+-. ..-..+|..+..-+. .....++.-.-..+.+|.+.. |.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 4579999999999999985543 1111 124567777665431 222233334466777777621 11
Q ss_pred --Eeeee---eecCceeEEEEcCC-----CCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEe
Q 010470 344 --CVNTI---IFHSNCNALAFSMD-----GQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG 413 (510)
Q Consensus 344 --~~~~~---~~~~~i~~i~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 413 (510)
.+..+ ........+++-|- ..+|++-+-||.+.+|+-+.......+.. .--+..+.|.+.-+.|++++
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~--~llPgPl~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD--FLLPGPLCYCPRTDSFVTAS 193 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC--CCCCcCeEEeecCCEEEEec
Confidence 11111 22233445555442 35778889999999999655443333333 24455688889889999999
Q ss_pred cCCcEEEEEcC
Q 010470 414 RDNLHNLFDIR 424 (510)
Q Consensus 414 ~d~~i~i~d~~ 424 (510)
.+..+.-|...
T Consensus 194 ss~~l~~Yky~ 204 (418)
T PF14727_consen 194 SSWTLECYKYQ 204 (418)
T ss_pred CceeEEEecHH
Confidence 88888888653
No 405
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.47 E-value=0.095 Score=48.98 Aligned_cols=233 Identities=17% Similarity=0.166 Sum_probs=118.0
Q ss_pred ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc---eec----ccccccceeEEEEecC---CCEEEEEeC-C-------
Q 010470 227 GCASILFEYNSARLISGGQDKSIKLWDTNTGSL---SST----LYGCLGSVLDLAITHD---NRSVIAASS-S------- 288 (510)
Q Consensus 227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~---~~~----~~~~~~~v~~~~~~~~---~~~l~~~~~-d------- 288 (510)
..++|+|.|||.++++ ...|.|++++ ..+.. +.. ..........++++|+ +.+|++... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999977665 5599999999 33332 222 2234567899999994 344444333 1
Q ss_pred -CeEEEEEcCCC--C------eeEeecC---CCCceEEEEEecCCCCEEEEEeCC-------------CcEEEEECCCCe
Q 010470 289 -NNLYVWDVNSG--R------VRHTLTG---HTDKVCAVDVSKISSRHVVSAAYD-------------RTLKVWDLHKGY 343 (510)
Q Consensus 289 -~~i~iwd~~~~--~------~~~~~~~---~~~~v~~i~~~~~~~~~l~s~~~d-------------g~i~iwd~~~~~ 343 (510)
..|.-|....+ . .+..+.. ....-..+.|.| ++.+.++.+.. |.|.-.+.. +.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~ 158 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GS 158 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SS
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEeccc-Cc
Confidence 24555555443 1 1111222 234456799999 66666665543 233334432 21
Q ss_pred E-------------eeee-eecCceeEEEEcCC-CCEEEEe-cCCCcEEEEECCCCc-----------------------
Q 010470 344 C-------------VNTI-IFHSNCNALAFSMD-GQTIFSG-HIDGNLRLWDIQTGK----------------------- 384 (510)
Q Consensus 344 ~-------------~~~~-~~~~~i~~i~~~~~-~~~l~~~-~~dg~i~i~d~~~~~----------------------- 384 (510)
. ...+ ....++..++|+|. |.++++- +.++.=.|.-+..|.
T Consensus 159 ~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~ 238 (331)
T PF07995_consen 159 IPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS 238 (331)
T ss_dssp B-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred CCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence 1 0111 12234678999998 6655542 122222222222211
Q ss_pred ------eeeeecccccccEEEEEEcC-------CCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCC
Q 010470 385 ------LLSEVAAHSLAAVTSISLSR-------SGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD 451 (510)
Q Consensus 385 ------~~~~~~~~~~~~i~~i~~~~-------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 451 (510)
+...+..+ ..+..+.|.. .|.++++....+.|....+.....+.............+..+++.||
T Consensus 239 ~~~~~~P~~~~~~~--~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD 316 (331)
T PF07995_consen 239 CPGFVPPVFAYPPH--SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD 316 (331)
T ss_dssp -TTS---SEEETTT----EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT
T ss_pred CCCcCccceeecCc--cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCC
Confidence 11222222 5666777753 34566666666788888776443222221111222223445889999
Q ss_pred CCEEEEEcCCCeEE
Q 010470 452 ESYVAAGSADGSVY 465 (510)
Q Consensus 452 ~~~l~~~~~dg~i~ 465 (510)
|.+.++.+.+|.|+
T Consensus 317 G~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 317 GALYVSDDSDGKIY 330 (331)
T ss_dssp SEEEEEE-TTTTEE
T ss_pred CeEEEEECCCCeEe
Confidence 98888877788764
No 406
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.45 E-value=0.00016 Score=60.31 Aligned_cols=140 Identities=13% Similarity=0.149 Sum_probs=83.2
Q ss_pred EEEEeCCCeEEEEEcCCCCee-EeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC-eEeeeeeec-Cce-eEE
Q 010470 282 VIAASSSNNLYVWDVNSGRVR-HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG-YCVNTIIFH-SNC-NAL 357 (510)
Q Consensus 282 l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~-~~i-~~i 357 (510)
+...+.+|.|.-+++...+.. +.-..|... .. .+..+..+++|+.+|.|.+|+..-. .....+... ..+ ..+
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~---v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG-QR---VVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc-ee---ecccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 455667777777776543311 111112222 11 1224677899999999999988621 111111111 112 222
Q ss_pred EEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEE--ecCCcEEEEEcCC
Q 010470 358 AFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTS--GRDNLHNLFDIRS 425 (510)
Q Consensus 358 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~--~~d~~i~i~d~~~ 425 (510)
....++.+.++++.+|.|+.|++.-.+.+.....|...++.....+..+..+..+ +.|..++.|++..
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 2233556788999999999999988887777666654555555566666666666 6677777777653
No 407
>PHA03098 kelch-like protein; Provisional
Probab=97.42 E-value=0.012 Score=59.51 Aligned_cols=184 Identities=16% Similarity=0.139 Sum_probs=91.9
Q ss_pred cCCCEEEEeeCCC------eEEEEeCCCCcceec--ccccccceeEEEEecCCCEEEEEeCC-----CeEEEEEcCCCCe
Q 010470 235 YNSARLISGGQDK------SIKLWDTNTGSLSST--LYGCLGSVLDLAITHDNRSVIAASSS-----NNLYVWDVNSGRV 301 (510)
Q Consensus 235 ~~~~~l~s~~~dg------~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~ 301 (510)
.++..++.||.++ .+..||..+.+.... +.........+ .-++..++.|+.+ ..+..||..+++-
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 4556777777543 577888876654221 11111111222 2367777777754 3577888876653
Q ss_pred eEeecC-CCCceEEEEEecCCCCEEEEEeCC------CcEEEEECCCCeEeeeeeecCc--eeEEEEcCCCCEEEEecCC
Q 010470 302 RHTLTG-HTDKVCAVDVSKISSRHVVSAAYD------RTLKVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFSGHID 372 (510)
Q Consensus 302 ~~~~~~-~~~~v~~i~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~d 372 (510)
...-.. +...-.+++.. ++.+++.||.+ +.+..||+.+++....-..+.+ ..+++. .++..++.|+.+
T Consensus 371 ~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 447 (534)
T PHA03098 371 REEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY-HDGKIYVIGGIS 447 (534)
T ss_pred eeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE-ECCEEEEECCcc
Confidence 221110 11111122222 56777777632 4688999887654432222211 122222 356666677643
Q ss_pred C--------cEEEEECCCCceeee--ecccccccEEEEEEcCCCCEEEEEecC-----CcEEEEEcCCc
Q 010470 373 G--------NLRLWDIQTGKLLSE--VAAHSLAAVTSISLSRSGNIILTSGRD-----NLHNLFDIRSL 426 (510)
Q Consensus 373 g--------~i~i~d~~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~i~d~~~~ 426 (510)
+ .+.+||+.+++-... ...+. .....+.+ ++.+++.|+.+ +.+.+||..+.
T Consensus 448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPR-INASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCCCcccceEEEecCCCCceeeCCCCCccc-ccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 2 388899876643221 11111 11122222 56666777654 35677776654
No 408
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.42 E-value=0.038 Score=48.16 Aligned_cols=158 Identities=11% Similarity=0.151 Sum_probs=103.3
Q ss_pred CCeEeeeeeecCceeEEEEcCCC-CEEEEecCCCc-EEEEECCCCceeeeecccccc-cEEEEEEcCCCCEEEEEecC--
Q 010470 341 KGYCVNTIIFHSNCNALAFSMDG-QTIFSGHIDGN-LRLWDIQTGKLLSEVAAHSLA-AVTSISLSRSGNIILTSGRD-- 415 (510)
Q Consensus 341 ~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~d-- 415 (510)
.|+++.....+.....++++|.- .-++.+-.-|+ ..+||......+..+...... -.-.=.|||||.+|++.-.|
T Consensus 57 aGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd 136 (366)
T COG3490 57 AGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFD 136 (366)
T ss_pred CCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCC
Confidence 46677777777778889999954 45556655555 578898877766555443211 12224699999999987654
Q ss_pred ---CcEEEEEcCC-ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC------------------CCeEEEEeCCCcc
Q 010470 416 ---NLHNLFDIRS-LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA------------------DGSVYIWSISKAD 473 (510)
Q Consensus 416 ---~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~------------------dg~i~iwd~~~~~ 473 (510)
|.|-|||.+. ...+..+..++-.... +.+.+||+.++..+. .-++.+.|..+|.
T Consensus 137 ~~rGViGvYd~r~~fqrvgE~~t~GiGpHe----v~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~ 212 (366)
T COG3490 137 PNRGVIGVYDAREGFQRVGEFSTHGIGPHE----VTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGN 212 (366)
T ss_pred CCCceEEEEecccccceecccccCCcCcce----eEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccc
Confidence 6899999984 4455566655544443 789999999887643 1123444444555
Q ss_pred eeec--cc--ccCcCEEEEEEeCCCCcEEEeeC
Q 010470 474 IVRT--LK--EHTAPVLSCSWSGLGKPLASADK 502 (510)
Q Consensus 474 ~~~~--~~--~~~~~v~~~~~~~~~~~l~s~~~ 502 (510)
++.. +. .+..+|..++..+||..++.|-.
T Consensus 213 liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy 245 (366)
T COG3490 213 LIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQY 245 (366)
T ss_pred hhhhccCchhhhhcceeeeeeCCCCcEEEEEEe
Confidence 4432 22 35567888999999887666543
No 409
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.41 E-value=0.051 Score=50.42 Aligned_cols=26 Identities=12% Similarity=0.013 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccchh
Q 010470 7 AREAIKHALKALRKRHLVEEGAHAPA 32 (510)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (510)
+-+.+.|+++.|+++-..-+..+.++
T Consensus 69 ~Lely~~~c~EL~~~I~egr~~~~~~ 94 (325)
T PF08317_consen 69 MLELYQFSCRELKKYISEGRQIFEEI 94 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567789999998874444444433
No 410
>PRK09039 hypothetical protein; Validated
Probab=97.39 E-value=0.052 Score=50.57 Aligned_cols=106 Identities=11% Similarity=0.141 Sum_probs=58.8
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHH---------------------HHHHHHHHHHHH
Q 010470 46 EWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESL---------------------ITSLQEELTQIR 104 (510)
Q Consensus 46 ~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------------------i~~l~~~l~~l~ 104 (510)
-+.+++..++++|+++.....++++.|.-.......+...+.++... ..+++..+.++.
T Consensus 43 fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~ 122 (343)
T PRK09039 43 FLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELA 122 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHH
Confidence 35566666666666666666666644433333222222222222211 112334445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 105 DECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKM 151 (510)
Q Consensus 105 ~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~ 151 (510)
.++...+..+.+...+...|+.|.++|+.++..++..+...+.....
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~ 169 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRE 169 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666667777777777777777777777666555533
No 411
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.37 E-value=0.023 Score=57.78 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhhhhhhhcccchhh
Q 010470 9 EAIKHALKALRKRHLVEEGAHAPAI 33 (510)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (510)
+.=+..+.+|.||.+.|..+...+-
T Consensus 484 q~DKq~l~~LEkrL~eE~~~R~~lE 508 (697)
T PF09726_consen 484 QQDKQSLQQLEKRLAEERRQRASLE 508 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334466666666666555544433
No 412
>PRK11637 AmiB activator; Provisional
Probab=97.37 E-value=0.16 Score=49.36 Aligned_cols=23 Identities=4% Similarity=0.188 Sum_probs=10.5
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhh
Q 010470 46 EWKEKADNLETELQQCYKAQSRL 68 (510)
Q Consensus 46 ~~~~~~~~l~~el~~~~k~~~~~ 68 (510)
.+++++..+++++.+..+.+...
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~ 66 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQ 66 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555544444433333
No 413
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.00079 Score=68.43 Aligned_cols=105 Identities=17% Similarity=0.250 Sum_probs=79.0
Q ss_pred CCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeec
Q 010470 362 DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVAS 441 (510)
Q Consensus 362 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 441 (510)
.+-.++.|++.|.+..+|....-.......+..++|++++|+.+|..++.|-.+|.|.+||...++..+.+..++.+...
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 46678899999999999986532212333344489999999999999999999999999999999999888877777665
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470 442 NWSRSCISPDESYVAAGSADGSVYIWSI 469 (510)
Q Consensus 442 ~~~~~~~s~~~~~l~~~~~dg~i~iwd~ 469 (510)
.+. +.+..++..+.++...|. +|.+
T Consensus 178 vi~-v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIF-VGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEE-EEEeCCCcEEEEccCCCc--eEEE
Confidence 333 344455557777777775 5543
No 414
>PHA03098 kelch-like protein; Provisional
Probab=97.32 E-value=0.021 Score=57.68 Aligned_cols=187 Identities=10% Similarity=0.062 Sum_probs=92.3
Q ss_pred cCCCEEEEEeCCC------eEEEEEcCCCCeeEee--cCCCCceEEEEEecCCCCEEEEEeCC-----CcEEEEECCCCe
Q 010470 277 HDNRSVIAASSSN------NLYVWDVNSGRVRHTL--TGHTDKVCAVDVSKISSRHVVSAAYD-----RTLKVWDLHKGY 343 (510)
Q Consensus 277 ~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~ 343 (510)
.++..++.|+.++ .+..||..+++....- ....... ++.. - ++.+++.||.+ ..+..||..+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~-~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTV-F-NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEE-E-CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 3566667776432 5778888776542211 1111111 2222 1 56777777765 357788887765
Q ss_pred EeeeeeecCc--eeEEEEcCCCCEEEEecCC------CcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC
Q 010470 344 CVNTIIFHSN--CNALAFSMDGQTIFSGHID------GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD 415 (510)
Q Consensus 344 ~~~~~~~~~~--i~~i~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 415 (510)
....-..+.+ -.+++. .++..++.|+.+ ..+..||+.+.+-...-..+....-.++ ...++.+++.|+.+
T Consensus 370 W~~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~ 447 (534)
T PHA03098 370 WREEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKIYVIGGIS 447 (534)
T ss_pred eeeCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCEEEEECCcc
Confidence 4332221111 122222 356777777632 3588899876543221111110111122 22355666666643
Q ss_pred --------CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC-----CeEEEEeCCCc
Q 010470 416 --------NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD-----GSVYIWSISKA 472 (510)
Q Consensus 416 --------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~ 472 (510)
..+.+||..+.+-...-........ . .....++..++.|+.+ +.|.+||..+.
T Consensus 448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~--~--~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRIN--A--SLCIFNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCCCcccceEEEecCCCCceeeCCCCCccccc--c--eEEEECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 2378889876543322111111111 1 1122367777777754 46888887764
No 415
>PRK13684 Ycf48-like protein; Provisional
Probab=97.31 E-value=0.15 Score=47.71 Aligned_cols=272 Identities=13% Similarity=0.090 Sum_probs=131.5
Q ss_pred ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceec----ccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC
Q 010470 225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSST----LYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR 300 (510)
Q Consensus 225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 300 (510)
...+.+|.|.....-+++|. +|.|..= .+.|+.-.. +......+.++.|.++ ..++ ++..+.|..- -+.|+
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~il~T-~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~-~G~~g~i~~S-~DgG~ 119 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTLLET-NDGGETWEERSLDLPEENFRLISISFKGD-EGWI-VGQPSLLLHT-TDGGK 119 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEEEEE-cCCCCCceECccCCcccccceeeeEEcCC-cEEE-eCCCceEEEE-CCCCC
Confidence 45788999986566566664 4543321 122322111 1112334677877643 3333 3444544332 22233
Q ss_pred eeEeec---CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee--ecCceeEEEEcCCCCEEEEecCCCcE
Q 010470 301 VRHTLT---GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII--FHSNCNALAFSMDGQTIFSGHIDGNL 375 (510)
Q Consensus 301 ~~~~~~---~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i 375 (510)
.-..+. ...+....+.... .+..++ ++..|.|..=+- .|+.-..+. ....+.++.+.|++.+++++. .|.+
T Consensus 120 tW~~~~~~~~~~~~~~~i~~~~-~~~~~~-~g~~G~i~~S~D-gG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~-~G~i 195 (334)
T PRK13684 120 NWTRIPLSEKLPGSPYLITALG-PGTAEM-ATNVGAIYRTTD-GGKNWEALVEDAAGVVRNLRRSPDGKYVAVSS-RGNF 195 (334)
T ss_pred CCeEccCCcCCCCCceEEEEEC-CCccee-eeccceEEEECC-CCCCceeCcCCCcceEEEEEECCCCeEEEEeC-CceE
Confidence 222211 0111122222222 222333 333444433221 222211111 124578899999887766665 4555
Q ss_pred EEE-ECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCE
Q 010470 376 RLW-DIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESY 454 (510)
Q Consensus 376 ~i~-d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 454 (510)
..- | ..++.-..........++++.+.+++..++++ ..|.+.+-....+........+.......+..+.+.|++..
T Consensus 196 ~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~ 273 (334)
T PRK13684 196 YSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEI 273 (334)
T ss_pred EEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCE
Confidence 432 2 22333333333444689999999999877765 45655432233333322222111111122344778888876
Q ss_pred EEEEcCCCeEEEEeCCCcceeeccc---ccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 455 VAAGSADGSVYIWSISKADIVRTLK---EHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 455 l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+++| .+|.|. ...+.++...... .-....+.+.|..++..++ .+..|.|..|+
T Consensus 274 ~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 274 WAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred EEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 6655 467554 4445555444332 1223577888877666555 55677876653
No 416
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.23 E-value=0.0018 Score=54.31 Aligned_cols=103 Identities=18% Similarity=0.268 Sum_probs=65.6
Q ss_pred CCEEEEeeCCCeEEEEeCCCCcce-ecccccccce-eEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCC-CceE
Q 010470 237 SARLISGGQDKSIKLWDTNTGSLS-STLYGCLGSV-LDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHT-DKVC 313 (510)
Q Consensus 237 ~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~ 313 (510)
+..+++|+.+|.|.+|+.+..... ..+..-...| ..+.-..++.+..+++.+|.|+.|++..++.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 457899999999999998732211 1111112222 223334455678889999999999999888887777777 4444
Q ss_pred EEEEecCCCCEEEEE--eCCCcEEEEECC
Q 010470 314 AVDVSKISSRHVVSA--AYDRTLKVWDLH 340 (510)
Q Consensus 314 ~i~~~~~~~~~l~s~--~~dg~i~iwd~~ 340 (510)
...++. .+.++.++ |.|..++.|++.
T Consensus 150 ~~ivv~-sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 150 ELIVVG-SDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeEEec-CCceEEeeccccchhhhhcchh
Confidence 444443 44555555 556666666654
No 417
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=97.22 E-value=0.21 Score=47.70 Aligned_cols=196 Identities=15% Similarity=0.100 Sum_probs=116.9
Q ss_pred cCCCEEEEeeCCCeEEEEeCCCCcceeccccc--ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCC-Cc
Q 010470 235 YNSARLISGGQDKSIKLWDTNTGSLSSTLYGC--LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHT-DK 311 (510)
Q Consensus 235 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~ 311 (510)
.+| .++.+..+|.|.-.|..++..+.....- ...+.+-.+..+|+ +++++.++.++.+|..+|..+....... ..
T Consensus 67 ~dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~ 144 (370)
T COG1520 67 GDG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPY 144 (370)
T ss_pred eCC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeE
Confidence 344 5555577888888898888865433222 12233333333565 8888888999999988999888887555 11
Q ss_pred eEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc----eeEEEEcCCCCEEEEecC--CCcEEEEECCCCce
Q 010470 312 VCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHI--DGNLRLWDIQTGKL 385 (510)
Q Consensus 312 v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~ 385 (510)
+..-.+. ....++.++.+|.+...|..+|........... +..-.. .....++.+.. ++.+.-+|..+|..
T Consensus 145 ~~~~~v~--~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~ 221 (370)
T COG1520 145 YASPPVV--GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGTL 221 (370)
T ss_pred EecCcEE--cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccCCcE
Confidence 1111111 234455555789999999999988777554331 111111 12334455555 66788888888887
Q ss_pred eeeecccccccEEE---EEEcCC-----CCEEEEEecCCcEEEEEcCCceeeeEeecC
Q 010470 386 LSEVAAHSLAAVTS---ISLSRS-----GNIILTSGRDNLHNLFDIRSLEVCGSLRAT 435 (510)
Q Consensus 386 ~~~~~~~~~~~i~~---i~~~~~-----~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 435 (510)
.............. ...... +..++.++.++.+..+|..+++.+..+...
T Consensus 222 ~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 222 KWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 77643221111110 111111 223356667788888999999888877765
No 418
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=97.21 E-value=0.11 Score=44.18 Aligned_cols=73 Identities=15% Similarity=0.120 Sum_probs=40.4
Q ss_pred ccchhhHhhcCccccccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 28 AHAPAIIALSRPIISQGSEWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIR 104 (510)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~ 104 (510)
+|..+-..||.-. ..-.+.+..|..++.++++........+.....+.+.+..-++..+.++.+|+..+..+.
T Consensus 10 af~~iK~YYndIT----~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~ 82 (201)
T PF13851_consen 10 AFQEIKNYYNDIT----LNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYE 82 (201)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555554222 234456667777777776666666555555555555555555555555555555554433
No 419
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.18 E-value=0.038 Score=53.20 Aligned_cols=151 Identities=11% Similarity=0.128 Sum_probs=91.2
Q ss_pred cccceeEEEEecCCCEEEEEe---CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecC---CCCEEEEEeCCCcEEEEEC
Q 010470 266 CLGSVLDLAITHDNRSVIAAS---SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKI---SSRHVVSAAYDRTLKVWDL 339 (510)
Q Consensus 266 ~~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~---~~~~l~s~~~dg~i~iwd~ 339 (510)
.-.++..++|. ||+.++-.. .+|.+++=| .+.+ +.-..|.++.|.|. +...+++......|.||.+
T Consensus 18 AiHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL 89 (671)
T PF15390_consen 18 AIHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL 89 (671)
T ss_pred hhccccceEec-CCCEEEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence 34578899998 565544332 234433322 2223 33456899999985 2334555566889999987
Q ss_pred C-----CCeEeeeee--e--cCc--eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCE
Q 010470 340 H-----KGYCVNTII--F--HSN--CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNI 408 (510)
Q Consensus 340 ~-----~~~~~~~~~--~--~~~--i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 408 (510)
. .++.+.... . .-+ ...+.|+|....|++-+....-.+++++.............+.|.|.+|.+||+.
T Consensus 90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~R 169 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQR 169 (671)
T ss_pred ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCE
Confidence 5 222222211 1 111 4678899999988876655444566665443333333333389999999999998
Q ss_pred EEEEecC-CcEEEEEcC
Q 010470 409 ILTSGRD-NLHNLFDIR 424 (510)
Q Consensus 409 l~~~~~d-~~i~i~d~~ 424 (510)
|+++-.. =.-++||-.
T Consensus 170 LVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 170 LVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEEeCCeEEEEEecCc
Confidence 8776444 356778753
No 420
>PRK11637 AmiB activator; Provisional
Probab=97.15 E-value=0.14 Score=49.87 Aligned_cols=77 Identities=13% Similarity=0.219 Sum_probs=47.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 45 SEWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKAL 121 (510)
Q Consensus 45 ~~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~ 121 (510)
..+++++..+++++.+..+.+.+...++......+..+...+.+.+..|..++.++.+++.++.+++.+++.....+
T Consensus 50 ~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 50 KSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777777777777766666666666665555555555555555555555555555555555555444443
No 421
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=97.13 E-value=0.26 Score=47.05 Aligned_cols=196 Identities=14% Similarity=0.165 Sum_probs=113.2
Q ss_pred CEEEEEeCCCeEEEEEcCCCCeeEeecCCC--CceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC--cee
Q 010470 280 RSVIAASSSNNLYVWDVNSGRVRHTLTGHT--DKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS--NCN 355 (510)
Q Consensus 280 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~i~ 355 (510)
..++++..+|.|.-.|..++..+.....-. ..+.+-.+.. ...++.++.+|.+..+|..+|..+....... .+.
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~--~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS--DGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe--CCeEEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 346666888889999998888665443221 2222222222 3448888889999999999999888887776 111
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccccc--ccEEEEEEcCCCCEEEEEec--CCcEEEEEcCCceeeeE
Q 010470 356 ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL--AAVTSISLSRSGNIILTSGR--DNLHNLFDIRSLEVCGS 431 (510)
Q Consensus 356 ~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~ 431 (510)
.-.+-.++ .++.++.+|.+...|..+|........... ..+..-.. .....++.+.. ++.+.-+|..++.....
T Consensus 147 ~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 147 SPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred cCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccCCcEeee
Confidence 22222233 444455789999999988988776554320 11111111 12334444444 56677777777776655
Q ss_pred eecCCCeeecCc------eeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccc
Q 010470 432 LRATGNRVASNW------SRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE 480 (510)
Q Consensus 432 ~~~~~~~~~~~~------~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 480 (510)
............ ..-.+.-++ -++.++.+|.+...+..+++.+..+..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 225 QKVSQTIGRTAISTTPAVDGGPVYVDG-GVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred eeeecccCcccccccccccCceEEECC-cEEEEecCCeEEEEEcCCCceEEEEec
Confidence 432221111100 000111122 235666778888889898988877765
No 422
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.09 Score=52.20 Aligned_cols=200 Identities=11% Similarity=0.124 Sum_probs=105.5
Q ss_pred cccceEEEEEecCCCE-EEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCee
Q 010470 224 HEGGCASILFEYNSAR-LISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR 302 (510)
Q Consensus 224 h~~~v~~~~~s~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 302 (510)
..|++.++..+|..-. ++ +.--.|+||+.. |..+..+.-..+.+..+.|+.+. -|++...+|++++|++. |..+
T Consensus 42 p~gGpIAV~r~p~~~~~~~--~a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~-ge~i 116 (829)
T KOG2280|consen 42 PFGGPIAVTRSPSKLVPLY--SARPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLL-GEFI 116 (829)
T ss_pred ccCCceEEEeccccccccc--ccceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecc-hhhh
Confidence 4455666666663211 11 334568999876 66666665555588899999654 57788899999999975 3333
Q ss_pred Eee----cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee-c---CceeEEEEcCCCC--E-EE-Eec
Q 010470 303 HTL----TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF-H---SNCNALAFSMDGQ--T-IF-SGH 370 (510)
Q Consensus 303 ~~~----~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~---~~i~~i~~~~~~~--~-l~-~~~ 370 (510)
... ......|..+.+.. +|-.+++. +|.+.+-+-........... + .+.+|..+.+++. . ++ +.-
T Consensus 117 e~~svg~e~~~~~I~ec~~f~-~GVavlt~--~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~ 193 (829)
T KOG2280|consen 117 ESNSVGFESQMSDIVECRFFH-NGVAVLTV--SGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDV 193 (829)
T ss_pred cccccccccccCceeEEEEec-CceEEEec--CCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeech
Confidence 221 12233344444444 34333333 44444433222212222221 1 1123333333322 1 11 110
Q ss_pred CCCcEEEEECCCC-ceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEee
Q 010470 371 IDGNLRLWDIQTG-KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLR 433 (510)
Q Consensus 371 ~dg~i~i~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 433 (510)
..| ..++-...+ .....+.... +.+.-+.+||+.++|+.-...|.|.+-+....+....+.
T Consensus 194 ~v~-~~~~q~~~~~~q~~~~~~~~-~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 194 AVG-LHICQVEESRVQLHALSWPN-SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred hhh-hcccceecccccccccCCCC-ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 111 011111111 1122222222 678889999999999999999999998887666555554
No 423
>PHA02790 Kelch-like protein; Provisional
Probab=97.10 E-value=0.051 Score=53.77 Aligned_cols=180 Identities=9% Similarity=-0.002 Sum_probs=88.2
Q ss_pred cCCCEEEEeeCCC-----eEEEEeCCCCccee--cccccccceeEEEEecCCCEEEEEeCC--CeEEEEEcCCCCeeEee
Q 010470 235 YNSARLISGGQDK-----SIKLWDTNTGSLSS--TLYGCLGSVLDLAITHDNRSVIAASSS--NNLYVWDVNSGRVRHTL 305 (510)
Q Consensus 235 ~~~~~l~s~~~dg-----~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~ 305 (510)
.++..+++||.++ .+..||..++.... .+....... +++ .-++...++|+.+ ..+..||..+++-...
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~- 346 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNM- 346 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeEEEC-
Confidence 3455667777543 47778887654322 221111111 122 2367777777753 3678888765543221
Q ss_pred cCCCCceE--EEEEecCCCCEEEEEeCCC---cEEEEECCCCeEeeeeeecCc--eeEEEEcCCCCEEEEecCCCcEEEE
Q 010470 306 TGHTDKVC--AVDVSKISSRHVVSAAYDR---TLKVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFSGHIDGNLRLW 378 (510)
Q Consensus 306 ~~~~~~v~--~i~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~dg~i~i~ 378 (510)
..-..+.. ++.. .++.+.+.||.++ .+..||..++.....-....+ -.+++ ..+|...+.| |.+.+|
T Consensus 347 ~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~G---G~~e~y 420 (480)
T PHA02790 347 PSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVG---RNAEFY 420 (480)
T ss_pred CCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEEC---CceEEe
Confidence 11111111 2222 1577777777653 477899887654432222211 11222 2356666666 357889
Q ss_pred ECCCCceeeeecccc-cccEEEEEEcCCCCEEEEEecC-----CcEEEEEcCC
Q 010470 379 DIQTGKLLSEVAAHS-LAAVTSISLSRSGNIILTSGRD-----NLHNLFDIRS 425 (510)
Q Consensus 379 d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d-----~~i~i~d~~~ 425 (510)
|..+++-...-.... ......+. -+|.+.++|+.+ ..+..||..+
T Consensus 421 dp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 421 CESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred cCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCC
Confidence 987654322111111 01222222 256777777654 2344555543
No 424
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.09 E-value=0.31 Score=47.27 Aligned_cols=146 Identities=11% Similarity=0.120 Sum_probs=86.0
Q ss_pred cceEEEEEecCCCEE-EEee--CCCeEEEEeCCCCcceecccccccceeEEEEecC----CCEEEEEeCCCeEEEEEcC-
Q 010470 226 GGCASILFEYNSARL-ISGG--QDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHD----NRSVIAASSSNNLYVWDVN- 297 (510)
Q Consensus 226 ~~v~~~~~s~~~~~l-~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~d~~i~iwd~~- 297 (510)
.+|..++|. ||+.+ .|.- .+|.+++=| .+ ..|.-..|..++|.|- ...+++......|.||-+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~----viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SK----VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---cc----EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 368889997 55543 3322 233333221 11 2234456889999885 3467777788899999885
Q ss_pred ----CCCeeEeecCCC---Cc--eEEEEEecCCCCEEEEEeCCCcEEEEECCC--CeEeeeeeecCceeEEEEcCCCCEE
Q 010470 298 ----SGRVRHTLTGHT---DK--VCAVDVSKISSRHVVSAAYDRTLKVWDLHK--GYCVNTIIFHSNCNALAFSMDGQTI 366 (510)
Q Consensus 298 ----~~~~~~~~~~~~---~~--v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~i~~i~~~~~~~~l 366 (510)
.++.+..-..+- -+ ..++.|+| ....++.-.....-.+++++. .+....+...+-|.|.||.+||+.|
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL 170 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence 233322222111 11 24567999 666666655444445555543 3344445556679999999999988
Q ss_pred EEecC-CCcEEEEEC
Q 010470 367 FSGHI-DGNLRLWDI 380 (510)
Q Consensus 367 ~~~~~-dg~i~i~d~ 380 (510)
+++-. .=.-++||-
T Consensus 171 VVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDS 185 (671)
T ss_pred EEEeCCeEEEEEecC
Confidence 76532 334678874
No 425
>PHA02790 Kelch-like protein; Provisional
Probab=97.07 E-value=0.05 Score=53.80 Aligned_cols=183 Identities=9% Similarity=-0.040 Sum_probs=86.9
Q ss_pred CCCEEEEEeCC-----CeEEEEEcCCCCeeEe--ecCCCCceEEEEEecCCCCEEEEEeCC--CcEEEEECCCCeEeeee
Q 010470 278 DNRSVIAASSS-----NNLYVWDVNSGRVRHT--LTGHTDKVCAVDVSKISSRHVVSAAYD--RTLKVWDLHKGYCVNTI 348 (510)
Q Consensus 278 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~ 348 (510)
++..+++|+.+ ..+..||..++..... +....... ++.. - ++.+.+.||.+ ..+..||..++.....-
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v~-~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGVP-A-NNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEEE-E-CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 45555666643 2577788776553221 11111111 2222 2 56777777754 46888988766543322
Q ss_pred eecCce-eEEEEcCCCCEEEEecCCC---cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC
Q 010470 349 IFHSNC-NALAFSMDGQTIFSGHIDG---NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR 424 (510)
Q Consensus 349 ~~~~~i-~~i~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 424 (510)
..+.+. ......-+|...+.|+.++ .+..||..+..-...-.......-.++ ..-+|.+.+.|+ .+.+||..
T Consensus 348 ~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~-~~~~~~IYv~GG---~~e~ydp~ 423 (480)
T PHA02790 348 SLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCA-LVFGRRLFLVGR---NAEFYCES 423 (480)
T ss_pred CCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceE-EEECCEEEEECC---ceEEecCC
Confidence 222211 1111223677777777553 477888876543221111110111112 123455556553 56788887
Q ss_pred CceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC-----CeEEEEeCCC
Q 010470 425 SLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD-----GSVYIWSISK 471 (510)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~ 471 (510)
+.+-...-......... -+...+|+..++|+.+ .+|.+||..+
T Consensus 424 ~~~W~~~~~m~~~r~~~----~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 424 SNTWTLIDDPIYPRDNP----ELIIVDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CCcEeEcCCCCCCcccc----EEEEECCEEEEECCcCCCcccceEEEEECCC
Confidence 65433221111111111 1223467777777754 2455666544
No 426
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=97.06 E-value=0.24 Score=45.32 Aligned_cols=18 Identities=22% Similarity=0.084 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 010470 7 AREAIKHALKALRKRHLV 24 (510)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~ 24 (510)
+-+.+.++|+.|+++=..
T Consensus 64 ~LElY~~sC~EL~~~I~e 81 (312)
T smart00787 64 LLELYQFSCKELKKYISE 81 (312)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456778899999987633
No 427
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.06 E-value=0.2 Score=51.28 Aligned_cols=68 Identities=13% Similarity=0.049 Sum_probs=36.2
Q ss_pred HHHHHHhhhhhhhcccchhhHhhcCccccccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHH
Q 010470 14 ALKALRKRHLVEEGAHAPAIIALSRPIISQGSEWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSS 82 (510)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~ 82 (510)
.++.||.-...-++.-.++-...+.... ....+...+..++.+..+++.+...+.......++....+
T Consensus 426 dvkkLraeLq~~Rq~E~ELRsqis~l~~-~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~L 493 (697)
T PF09726_consen 426 DVKKLRAELQSSRQSEQELRSQISSLTN-NERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQL 493 (697)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhhccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555665555555555555555443332 2235566666666666666665555555444444443333
No 428
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=97.05 E-value=0.1 Score=40.91 Aligned_cols=69 Identities=26% Similarity=0.294 Sum_probs=30.7
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 46 EWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTEL 114 (510)
Q Consensus 46 ~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l 114 (510)
.+++++..|+++|......+..+.-...........+...++.....+..+..++..++.+...|...+
T Consensus 21 sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~l 89 (140)
T PF10473_consen 21 SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKEL 89 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777766554444443333333333333333333333333333333333333333333333
No 429
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=97.04 E-value=0.059 Score=45.87 Aligned_cols=65 Identities=22% Similarity=0.326 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 47 WKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLK 111 (510)
Q Consensus 47 ~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~ 111 (510)
..+++..+++++.+..+...+....+..............+..+..+..++..+..+.++..++.
T Consensus 86 ~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 86 LQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433333333333333333222233333333333333333333333333333
No 430
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=97.03 E-value=0.19 Score=43.72 Aligned_cols=196 Identities=15% Similarity=0.089 Sum_probs=127.7
Q ss_pred ceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee
Q 010470 269 SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI 348 (510)
Q Consensus 269 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 348 (510)
....++-.|||...+++...+.|--.|..+|+....--+.......|..-| ++..-++-+.. -|.-+|.++.... .+
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt-~f 139 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVT-RF 139 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccceE-Ee
Confidence 345678889999999999888888889999987766555666667777777 55544443322 5555666554322 22
Q ss_pred ee-----cCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEc
Q 010470 349 IF-----HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDI 423 (510)
Q Consensus 349 ~~-----~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~ 423 (510)
.. ..+.+...|.+.|+.-+++.. |.---.|.. ...+..+..........|+..|+|...++.-.++.|-..|.
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp 217 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDP 217 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeecc-ccceecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccc
Confidence 21 245788999999998888763 222222322 22344455444467888999999999999888888888887
Q ss_pred CCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC
Q 010470 424 RSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK 471 (510)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 471 (510)
.++. ...+...... ......+..+|.|..-++....+.++.||..+
T Consensus 218 ~~~~-aev~p~P~~~-~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 218 FAGH-AEVVPQPNAL-KAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred ccCC-cceecCCCcc-cccccccccCccCcEEEeccCCceeeEeCccc
Confidence 7662 2223222221 11122345577888888877788888888654
No 431
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.0076 Score=62.00 Aligned_cols=142 Identities=14% Similarity=0.158 Sum_probs=93.9
Q ss_pred ceeEEEEecCCCEEEEEe--CCCeEEEEEcCCCCee-----Eeec------CCCCceEEEEEecCCCCEEEEEeCCCcEE
Q 010470 269 SVLDLAITHDNRSVIAAS--SSNNLYVWDVNSGRVR-----HTLT------GHTDKVCAVDVSKISSRHVVSAAYDRTLK 335 (510)
Q Consensus 269 ~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~-----~~~~------~~~~~v~~i~~~~~~~~~l~s~~~dg~i~ 335 (510)
++..+...+|+...++.. ++-.|..||+.+-..- .-+. .....+.++.|+|.-....+.+..|+.|.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 455566667766555443 4448899998753211 1111 12234567888886566677788899999
Q ss_pred EEECCCC-eEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccc---ccccEEEEEEcCCCCEEEE
Q 010470 336 VWDLHKG-YCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH---SLAAVTSISLSRSGNIILT 411 (510)
Q Consensus 336 iwd~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~~ 411 (510)
+..+.-. ..+..+......++++|+|.|+.+++|...|++.-|.. .+.....+... ....|.+|+|-....++++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 9877532 22333455566899999999999999999999998875 34433333322 2367999999877666655
No 432
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.00 E-value=0.34 Score=46.12 Aligned_cols=143 Identities=14% Similarity=0.133 Sum_probs=82.4
Q ss_pred cceEEEEEecCCCEEEEee-----------CCC-eEEEEeCCC--Ccc--eecccccccceeEEEEecCCCEEEEEeCCC
Q 010470 226 GGCASILFEYNSARLISGG-----------QDK-SIKLWDTNT--GSL--SSTLYGCLGSVLDLAITHDNRSVIAASSSN 289 (510)
Q Consensus 226 ~~v~~~~~s~~~~~l~s~~-----------~dg-~i~iwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 289 (510)
.....|+|+++|+++++-. ..+ .|.+++-.+ |+. ...+.........+++.+++ |++++..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~- 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP- 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC-
Confidence 3467899999998877753 223 777776432 332 22333334456889999888 4445444
Q ss_pred eEEEE-EcCCC-----Ce---eEeecC----CCCceEEEEEecCCCCEEEEEeC-------------------CCcEEEE
Q 010470 290 NLYVW-DVNSG-----RV---RHTLTG----HTDKVCAVDVSKISSRHVVSAAY-------------------DRTLKVW 337 (510)
Q Consensus 290 ~i~iw-d~~~~-----~~---~~~~~~----~~~~v~~i~~~~~~~~~l~s~~~-------------------dg~i~iw 337 (510)
.|..| |.... +. ...+.. +......+.|.| ++.+.++.+. .|.|.-+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 34434 44321 21 112222 124467889988 6666555442 1456666
Q ss_pred ECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCC
Q 010470 338 DLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHID 372 (510)
Q Consensus 338 d~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 372 (510)
|..++..............++|+|+|.++++-..+
T Consensus 170 ~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 170 NPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred ecCCCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence 76655433222333457899999999988765543
No 433
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=96.97 E-value=0.065 Score=53.24 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhhhhhhhcccchhhH
Q 010470 8 REAIKHALKALRKRHLVEEGAHAPAII 34 (510)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (510)
.-+.|---.+||||+|+-.+.+.+.--
T Consensus 389 ~QplrsENaqLrRrLrilnqqlreqe~ 415 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLRILNQQLREQEK 415 (861)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 334444556788888877766666433
No 434
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.96 E-value=0.089 Score=46.97 Aligned_cols=146 Identities=17% Similarity=0.130 Sum_probs=87.7
Q ss_pred ceeEEEEcCCCCEEEEec---CCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEE-cCCcee
Q 010470 353 NCNALAFSMDGQTIFSGH---IDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFD-IRSLEV 428 (510)
Q Consensus 353 ~i~~i~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d-~~~~~~ 428 (510)
.+.+.+++++|..++... ....++++. .+......... ..+....|++++...++...+....++. ...+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 588999999999877554 333455554 33333333222 4788889999988777777666666663 222222
Q ss_pred e-eEeecCCCeeecCceeEEEcCCCCEEEEEc---CCCeEEEEeCC---Cc------ceeecccccCcCEEEEEEeCCCC
Q 010470 429 C-GSLRATGNRVASNWSRSCISPDESYVAAGS---ADGSVYIWSIS---KA------DIVRTLKEHTAPVLSCSWSGLGK 495 (510)
Q Consensus 429 ~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~---~dg~i~iwd~~---~~------~~~~~~~~~~~~v~~~~~~~~~~ 495 (510)
. ........ ...+..+.+||||..++... .++.|++--+. .+ .+..........+.+++|.+++.
T Consensus 101 ~~~~v~~~~~--~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 101 EPVEVDWPGL--RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST 178 (253)
T ss_pred eeEEeccccc--CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence 1 11111111 11456699999999877655 35777777543 23 11112222346789999999998
Q ss_pred cEEEeeCCC
Q 010470 496 PLASADKNG 504 (510)
Q Consensus 496 ~l~s~~~dg 504 (510)
+++.+...+
T Consensus 179 L~V~~~~~~ 187 (253)
T PF10647_consen 179 LVVLGRSAG 187 (253)
T ss_pred EEEEeCCCC
Confidence 776655443
No 435
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=96.92 E-value=0.19 Score=48.42 Aligned_cols=270 Identities=12% Similarity=0.088 Sum_probs=136.0
Q ss_pred ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccc-cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeE
Q 010470 225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCL-GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH 303 (510)
Q Consensus 225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 303 (510)
..+|.++.++..| .+..|+.|| +..||..+++.+..-.... ..|..+..+-.+. +.+|+.+| |++.+....+...
T Consensus 164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhhccccc
Confidence 4578888888877 566777776 6777877777665544433 5666666665555 66676665 7777766532221
Q ss_pred eecC-CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec---CceeEEEEcCCCCEEEEecCCCcEEEEE
Q 010470 304 TLTG-HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH---SNCNALAFSMDGQTIFSGHIDGNLRLWD 379 (510)
Q Consensus 304 ~~~~-~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~i~~~~~~~~l~~~~~dg~i~i~d 379 (510)
-... ....|..+.-. ....+..|+.+|..+.--.+.+-.......+ +.++++..+.+|. +.+++.+|.+++-+
T Consensus 240 ~~~~lp~~~I~ll~qD--~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~~ 316 (671)
T COG3292 240 WGPMLPSGNILLLVQD--AQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYLT 316 (671)
T ss_pred cCCCCcchheeeeecc--cCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEEEec
Confidence 1111 22334333322 3455666766654433322222222222222 3466677666776 56677666665543
Q ss_pred CCCCceeeeecccccccEEEEEEcC--CCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEE
Q 010470 380 IQTGKLLSEVAAHSLAAVTSISLSR--SGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAA 457 (510)
Q Consensus 380 ~~~~~~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 457 (510)
. .......+.......+......| .+..+-.....|.+.+-+-.++..+.....-.. ..++.+++..+| .+..
T Consensus 317 a-~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg---~nit~~~~d~~g-~lWl 391 (671)
T COG3292 317 A-DWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRG---MNITTTLEDSRG-RLWL 391 (671)
T ss_pred c-hhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccc---cccchhhhccCC-cEEE
Confidence 2 22221122221111222222222 111111122222333344444444433221111 123335666644 4455
Q ss_pred EcCCCeEEEEeCCC-cceeecccc-cCcCEEEEEEeCCCCcEEEeeCCCeEE
Q 010470 458 GSADGSVYIWSISK-ADIVRTLKE-HTAPVLSCSWSGLGKPLASADKNGVVC 507 (510)
Q Consensus 458 ~~~dg~i~iwd~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~ 507 (510)
|+...-+.-|+..+ +-.+....+ ..++|..+.=.|+++ |..|+.+|.++
T Consensus 392 gs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk 442 (671)
T COG3292 392 GSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVK 442 (671)
T ss_pred EecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEe
Confidence 55553377777666 333333333 466788888888887 88888888765
No 436
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.019 Score=56.77 Aligned_cols=180 Identities=8% Similarity=0.048 Sum_probs=94.4
Q ss_pred ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceec-c--cccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 010470 223 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSST-L--YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG 299 (510)
Q Consensus 223 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 299 (510)
-..+.+..+.|+.+. .|++...+|++.||++........ . ......|..+.|..+| +++-..+|.+.+-+-...
T Consensus 81 w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~ 157 (829)
T KOG2280|consen 81 WKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG--VAVLTVSGQVILINGVEE 157 (829)
T ss_pred hcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--eEEEecCCcEEEEcCCCc
Confidence 344588999999765 666778899999999863322110 1 2223345556665555 344444455544432222
Q ss_pred CeeEeecC---CCCceEEEEEecCCC--CEEEEEe-CCC-cEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCC
Q 010470 300 RVRHTLTG---HTDKVCAVDVSKISS--RHVVSAA-YDR-TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHID 372 (510)
Q Consensus 300 ~~~~~~~~---~~~~v~~i~~~~~~~--~~l~s~~-~dg-~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 372 (510)
....+++. ...+-.|....+... ..++-.. ..+ .+..-+....+.......++.+.-+.++|+.++|+.-+..
T Consensus 158 ~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~ 237 (829)
T KOG2280|consen 158 PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTET 237 (829)
T ss_pred chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecC
Confidence 12222221 111212333222111 1111111 000 0111111112222222224668889999999999999999
Q ss_pred CcEEEEECCCCceeeeecccccccEEEEEEcCC
Q 010470 373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRS 405 (510)
Q Consensus 373 g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~ 405 (510)
|.|.+-+....+....+......+...++|..+
T Consensus 238 G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgn 270 (829)
T KOG2280|consen 238 GKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGN 270 (829)
T ss_pred CcEEEEecchhhhhhccCCCCCCchHhceeecC
Confidence 999999988777777776443345556666443
No 437
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.88 E-value=0.052 Score=51.66 Aligned_cols=148 Identities=14% Similarity=0.115 Sum_probs=80.8
Q ss_pred CceeEEEEcCCCCEEEEec-----------CCC-cEEEEECCC--Cce--eeeecccccccEEEEEEcCCCCEEEEEecC
Q 010470 352 SNCNALAFSMDGQTIFSGH-----------IDG-NLRLWDIQT--GKL--LSEVAAHSLAAVTSISLSRSGNIILTSGRD 415 (510)
Q Consensus 352 ~~i~~i~~~~~~~~l~~~~-----------~dg-~i~i~d~~~--~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 415 (510)
..+..++|.++|+++++-. ..+ .|.+++-.+ |+. ...+...- .....+++.++| |++++..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l-~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL-SMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC-CCccceeEecCC--EEEeCCC
Confidence 4577899999999877643 223 787776543 332 23333222 567889999988 4444444
Q ss_pred CcEEEEEcCCc-----eeeeE---eecCCCeeecCceeEEEcCCCCEEEEEcCC-------------------CeEEEEe
Q 010470 416 NLHNLFDIRSL-----EVCGS---LRATGNRVASNWSRSCISPDESYVAAGSAD-------------------GSVYIWS 468 (510)
Q Consensus 416 ~~i~i~d~~~~-----~~~~~---~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-------------------g~i~iwd 468 (510)
...++.|.... +.... +.............+.+.|||.+.++-+.. |.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 33334344321 11111 211101012224458899999876654421 4566666
Q ss_pred CCCcceeecccccCcCEEEEEEeCCCCcEEEeeCC
Q 010470 469 ISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKN 503 (510)
Q Consensus 469 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 503 (510)
..+++....-.++ .....++|+|+|.++++-..+
T Consensus 171 pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 171 PDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCCCeEEEEecCc-CCCccceECCCCCEEEEccCC
Confidence 5554432222333 345789999999877764433
No 438
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.071 Score=44.26 Aligned_cols=178 Identities=12% Similarity=0.116 Sum_probs=102.3
Q ss_pred CCCEEEEEe--CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCcee
Q 010470 278 DNRSVIAAS--SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCN 355 (510)
Q Consensus 278 ~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~ 355 (510)
+|.++.+.+ ....|++||+.+++.+..-+-....+..=-.....+.+..-.-.+|.-..+|.++-+++..+...+.-.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW 134 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW 134 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence 455555555 345899999999987765543222222211111123333344458889999999988888888887777
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEECCCCceeeeec----ccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeE
Q 010470 356 ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVA----AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGS 431 (510)
Q Consensus 356 ~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 431 (510)
.++. |+..|+.++...+++.-|.++.....++. +.....++-+.|- +|...+-.-.+..|...|..+++.+..
T Consensus 135 gLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~w 211 (262)
T COG3823 135 GLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAW 211 (262)
T ss_pred eeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEE
Confidence 7765 56667777666788888876654333322 2111223333332 455555555555666777777777666
Q ss_pred eecCCCe--------eecCceeEEEcCCCC-EEEEE
Q 010470 432 LRATGNR--------VASNWSRSCISPDES-YVAAG 458 (510)
Q Consensus 432 ~~~~~~~--------~~~~~~~~~~s~~~~-~l~~~ 458 (510)
+...+-. .....+.+++.|++. ++++|
T Consensus 212 idlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 212 IDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 5432211 111234578888764 44444
No 439
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.83 E-value=0.28 Score=47.79 Aligned_cols=45 Identities=11% Similarity=0.203 Sum_probs=21.9
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHH
Q 010470 46 EWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKE 90 (510)
Q Consensus 46 ~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~ 90 (510)
-.+..+..++..|++..+.+..+...+.....++..++..+.+.+
T Consensus 89 ~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~ 133 (546)
T KOG0977|consen 89 KYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAE 133 (546)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344445555555555555555554444444444444444444443
No 440
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.82 E-value=0.38 Score=43.81 Aligned_cols=224 Identities=13% Similarity=0.149 Sum_probs=104.4
Q ss_pred ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee--cCC---CCceEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 010470 267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL--TGH---TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK 341 (510)
Q Consensus 267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~---~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~ 341 (510)
..++.+|.|..+..-+++| ..+.|.- ..+.|+.=... ... .-...++.|.. ...+++|. .+ +.+.....
T Consensus 16 ~~~l~dV~F~d~~~G~~VG-~~g~il~-T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~ivG~-~g-~ll~T~Dg 89 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVG-AYGTILK-TTDGGKTWQPVSLDLDNPFDYHLNSISFDG--NEGWIVGE-PG-LLLHTTDG 89 (302)
T ss_dssp SS-EEEEEESSSS-EEEEE-TTTEEEE-ESSTTSS-EE-----S-----EEEEEEEET--TEEEEEEE-TT-EEEEESST
T ss_pred CCceEEEEEecCCEEEEEe-cCCEEEE-ECCCCccccccccCCCccceeeEEEEEecC--CceEEEcC-Cc-eEEEecCC
Confidence 4578899998555555554 4454422 22333321111 111 12356677754 34444443 44 34444444
Q ss_pred CeEeeeeee----cCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCc
Q 010470 342 GYCVNTIIF----HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNL 417 (510)
Q Consensus 342 ~~~~~~~~~----~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~ 417 (510)
|..-..+.. +.....+....++..++++ ..|.|+.- ...|+.-..+.....+.+..+..+++|.+++++.....
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~-~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~ 167 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALGDGSAELAG-DRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNF 167 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEETTEEEEEE-TT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSE
T ss_pred CCCcEEeecCCCCCCCeeEEEEcCCCcEEEEc-CCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccE
Confidence 443333321 2233444444444444444 44655432 23454444444444478999999999999999987777
Q ss_pred EEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEe-CCCccee----ecccccCcCEEEEEEeC
Q 010470 418 HNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWS-ISKADIV----RTLKEHTAPVLSCSWSG 492 (510)
Q Consensus 418 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd-~~~~~~~----~~~~~~~~~v~~~~~~~ 492 (510)
..-||.-...- ..+.......+..+.|+|++.+.+++ ..|.|++=+ ....+.. ..+....-.+.+++|.+
T Consensus 168 ~~s~~~G~~~w----~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~ 242 (302)
T PF14870_consen 168 YSSWDPGQTTW----QPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP 242 (302)
T ss_dssp EEEE-TT-SS-----EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS
T ss_pred EEEecCCCccc----eEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecC
Confidence 77777543111 11222222344558999998887755 678788776 2222221 12222334589999999
Q ss_pred CCCcEEEeeCC
Q 010470 493 LGKPLASADKN 503 (510)
Q Consensus 493 ~~~~l~s~~~d 503 (510)
++...++|+..
T Consensus 243 ~~~~wa~gg~G 253 (302)
T PF14870_consen 243 PNEIWAVGGSG 253 (302)
T ss_dssp SS-EEEEESTT
T ss_pred CCCEEEEeCCc
Confidence 87777766544
No 441
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.81 E-value=0.56 Score=48.37 Aligned_cols=94 Identities=12% Similarity=0.125 Sum_probs=52.4
Q ss_pred ccceeEEEEecCCCEEEEEeCCCeEEEEEcCC-CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEe
Q 010470 267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNS-GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV 345 (510)
Q Consensus 267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 345 (510)
.-.|..+.++|+|++++..|..|. .|-.+.. ......+.+....+.|-.+ |.+..++ ..+
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~-~v~~~~~-~~~---------------- 144 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTV-PVDERFF-TSN---------------- 144 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEE-Eechhhc-cCC----------------
Confidence 346788999999999998888664 4444432 1111223322333333222 1122222 111
Q ss_pred eeeeecCceeEEEEcCC---CCEEEEecCCCcEEEEECCCC
Q 010470 346 NTIIFHSNCNALAFSMD---GQTIFSGHIDGNLRLWDIQTG 383 (510)
Q Consensus 346 ~~~~~~~~i~~i~~~~~---~~~l~~~~~dg~i~i~d~~~~ 383 (510)
....+..+.|+|. +.+|++-+.|+.+++||+...
T Consensus 145 ----~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 145 ----SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred ----CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 1123566778774 577888788888888888654
No 442
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.80 E-value=0.043 Score=46.54 Aligned_cols=24 Identities=8% Similarity=0.266 Sum_probs=15.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhhh
Q 010470 45 SEWKEKADNLETELQQCYKAQSRL 68 (510)
Q Consensus 45 ~~~~~~~~~l~~el~~~~k~~~~~ 68 (510)
+.+..++..++++++++.....+.
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~ 112 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNI 112 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777665444444
No 443
>PRK09039 hypothetical protein; Validated
Probab=96.80 E-value=0.15 Score=47.50 Aligned_cols=90 Identities=16% Similarity=0.193 Sum_probs=39.5
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 46 EWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVV 125 (510)
Q Consensus 46 ~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~ 125 (510)
.+++++..++..+..+...+.++...+....... .+.+.....+..++...+.+..+...++..+.++++.|+
T Consensus 78 ~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~-------~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr 150 (343)
T PRK09039 78 DLQDSVANLRASLSAAEAERSRLQALLAELAGAG-------AAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALR 150 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-------chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5666666666666665555555544333211111 122333333334444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010470 126 SENQQIRAQLEEMTMKA 142 (510)
Q Consensus 126 ~e~~~l~~~~~~~~~~~ 142 (510)
.++..+..++...+.+.
T Consensus 151 ~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 151 RQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 444
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.77 E-value=0.0056 Score=37.80 Aligned_cols=32 Identities=6% Similarity=0.086 Sum_probs=28.8
Q ss_pred cceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc
Q 010470 226 GGCASILFEYNSARLISGGQDKSIKLWDTNTGS 258 (510)
Q Consensus 226 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 258 (510)
..|.+++|+|..++||.|+.+|.|.+|.+ +++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 46999999999999999999999999998 444
No 445
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.67 E-value=0.44 Score=42.59 Aligned_cols=148 Identities=19% Similarity=0.161 Sum_probs=86.0
Q ss_pred ceEEEEEecCCCCEEEEEe---CCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEE-CCCCce-
Q 010470 311 KVCAVDVSKISSRHVVSAA---YDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWD-IQTGKL- 385 (510)
Q Consensus 311 ~v~~i~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d-~~~~~~- 385 (510)
.+.+.++++ ++..++... ....+.++.. +...........+..-.|++++...++...+....++. ...+..
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcC--CCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 678889999 555544433 3345555544 33333333444688889999988777766666666663 333322
Q ss_pred eeeecccccc-cEEEEEEcCCCCEEEEEe---cCCcEEEEEcC---CceeeeEee---cCCCeeecCceeEEEcCCCCEE
Q 010470 386 LSEVAAHSLA-AVTSISLSRSGNIILTSG---RDNLHNLFDIR---SLEVCGSLR---ATGNRVASNWSRSCISPDESYV 455 (510)
Q Consensus 386 ~~~~~~~~~~-~i~~i~~~~~~~~l~~~~---~d~~i~i~d~~---~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~~l 455 (510)
...+...... .|..+.+||||..++... .++.|.+--+. .+ ....+. .........+..+.|.+++.++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g-~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG-VPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC-CcceeccceEecccccCcceeeeecCCCEEE
Confidence 2222222212 899999999999877665 34667666543 22 011111 1111112345568999999988
Q ss_pred EEEcCCC
Q 010470 456 AAGSADG 462 (510)
Q Consensus 456 ~~~~~dg 462 (510)
+.+...+
T Consensus 181 V~~~~~~ 187 (253)
T PF10647_consen 181 VLGRSAG 187 (253)
T ss_pred EEeCCCC
Confidence 8776644
No 446
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.61 E-value=0.37 Score=40.98 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 96 LQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKA 142 (510)
Q Consensus 96 l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~ 142 (510)
++..+..++.++..|.-+.+.+.+....+..|++.+...++..-...
T Consensus 91 ~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~ev 137 (201)
T PF13851_consen 91 LKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEV 137 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666666666666666666665555443333
No 447
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.073 Score=49.58 Aligned_cols=144 Identities=11% Similarity=0.107 Sum_probs=89.7
Q ss_pred eeEEEEcCCCCEEEEecCCCcEEEEECCC--CceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeE
Q 010470 354 CNALAFSMDGQTIFSGHIDGNLRLWDIQT--GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGS 431 (510)
Q Consensus 354 i~~i~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 431 (510)
.+.+-|...++.+++ ...|.+.-|-... ...+..+.....++|.+|.||+|++.+++--.+..|.+++....+....
T Consensus 25 sngvFfDDaNkqlfa-vrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~ 103 (657)
T KOG2377|consen 25 SNGVFFDDANKQLFA-VRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE 103 (657)
T ss_pred ccceeeccCcceEEE-EecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence 345555544444443 3344555555432 3344455555558999999999999999999999999998743333222
Q ss_pred eecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC-cceeecccccCcCEEEEEEeCCCCcEEEe
Q 010470 432 LRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK-ADIVRTLKEHTAPVLSCSWSGLGKPLASA 500 (510)
Q Consensus 432 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 500 (510)
...........+-..+|+.+ .-+|..+..| +-+|-+.. ...++..+.|.-.|+-..|.++.+.+.-+
T Consensus 104 ~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 104 YTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred HHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence 22221222222344677665 5566666566 77776654 34456667788889999999988754433
No 448
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.59 E-value=0.44 Score=41.60 Aligned_cols=237 Identities=11% Similarity=0.048 Sum_probs=148.9
Q ss_pred ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCee-Eee
Q 010470 227 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR-HTL 305 (510)
Q Consensus 227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~ 305 (510)
.-..++-+|||..-+++...|.|--.|..+|+....--+.......|...|||...++-+.. .|.-.|-++.... ..+
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l 141 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL 141 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence 46678889999999999888889888999998876666667777889999999988776655 4555565555432 122
Q ss_pred --cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee--cCceeEEEEcCCCCEEEEecCCCcEEEEECC
Q 010470 306 --TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF--HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQ 381 (510)
Q Consensus 306 --~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~ 381 (510)
...........|.+ .+++-+++.. |.---.|..+ ..+..+.. ....+.||..|+|..-++.-.+..|...|..
T Consensus 142 p~~~a~~nlet~vfD~-~G~lWFt~q~-G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~ 218 (353)
T COG4257 142 PLEHADANLETAVFDP-WGNLWFTGQI-GAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPF 218 (353)
T ss_pred ccccCCCcccceeeCC-CccEEEeecc-ccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccc
Confidence 22234566677777 6777777652 2211222211 12222222 2347889999999998888778888888887
Q ss_pred CCceeeeecccc--cccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEc
Q 010470 382 TGKLLSEVAAHS--LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGS 459 (510)
Q Consensus 382 ~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 459 (510)
++.. ..+.... ...-..+-.+|.|..-++....+.+.-||..... -..+......... ..+.+...|+.-.+--
T Consensus 219 ~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arp--ys~rVD~~grVW~sea 294 (353)
T COG4257 219 AGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARP--YSMRVDRHGRVWLSEA 294 (353)
T ss_pred cCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCc--ceeeeccCCcEEeecc
Confidence 7632 2222221 1455667778889988888888899888876543 2333322221111 1134455555544444
Q ss_pred CCCeEEEEeCCC
Q 010470 460 ADGSVYIWSISK 471 (510)
Q Consensus 460 ~dg~i~iwd~~~ 471 (510)
..|.|.-||..+
T Consensus 295 ~agai~rfdpet 306 (353)
T COG4257 295 DAGAIGRFDPET 306 (353)
T ss_pred ccCceeecCccc
Confidence 455666666544
No 449
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=96.55 E-value=0.93 Score=44.81 Aligned_cols=143 Identities=18% Similarity=0.158 Sum_probs=75.1
Q ss_pred CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc----eeEEEEcCC
Q 010470 287 SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMD 362 (510)
Q Consensus 287 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----i~~i~~~~~ 362 (510)
..+...++|. .|..+..+.........+...+ ++.+++..+ +.+..+|+. |+.+........ -..+...|+
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~-nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~n 200 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLP-NGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPN 200 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-T-TS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TT
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcC-CCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCC
Confidence 4456777773 4666666543322222244555 566555444 889999985 777666665553 257778899
Q ss_pred CCEEEEecC-------------CCcEEEEECCCCceeeeeccc--------------------------ccccEEEEEEc
Q 010470 363 GQTIFSGHI-------------DGNLRLWDIQTGKLLSEVAAH--------------------------SLAAVTSISLS 403 (510)
Q Consensus 363 ~~~l~~~~~-------------dg~i~i~d~~~~~~~~~~~~~--------------------------~~~~i~~i~~~ 403 (510)
|++|+.+.. .-.|..+| .+|+.+..+... .-..++++.+.
T Consensus 201 Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd 279 (477)
T PF05935_consen 201 GNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD 279 (477)
T ss_dssp S-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred CCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence 999887761 11355666 667665543210 00248899999
Q ss_pred CCCCEEEEEecC-CcEEEEEcCCceeeeEeecC
Q 010470 404 RSGNIILTSGRD-NLHNLFDIRSLEVCGSLRAT 435 (510)
Q Consensus 404 ~~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~ 435 (510)
+....|+++++. ..|..+|.++++....+..+
T Consensus 280 ~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 280 PSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp TTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred CCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 955555555554 58888998888887776554
No 450
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.52 E-value=0.11 Score=33.88 Aligned_cols=59 Identities=22% Similarity=0.296 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 82 SKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTM 140 (510)
Q Consensus 82 ~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~ 140 (510)
+...++..-..|+-|+-+++.++++...|..+...+....+.|..|..+++.+-..-++
T Consensus 9 LE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQe 67 (79)
T COG3074 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQE 67 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555666666666666666666666665555555555555555554443333
No 451
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.51 E-value=0.22 Score=44.49 Aligned_cols=98 Identities=15% Similarity=0.183 Sum_probs=46.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 44 GSEWKEKADNLETELQQCYKAQSRLSEQLVVEVAESR-----------SSKALLQEKESLITSLQEELTQIRDECSQLKT 112 (510)
Q Consensus 44 ~~~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~ 112 (510)
...|.+++..|+.|...+......+...-....+..+ .....+..+..++....++.....+++..|..
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Lls 241 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLS 241 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888888888877665554444422211111111 12222233333333333334444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 113 ELEEKIKALELVVSENQQIRAQLEEMTMK 141 (510)
Q Consensus 113 ~l~~~~~~~~~l~~e~~~l~~~~~~~~~~ 141 (510)
++-.+.+....+..|.+.+...+......
T Consensus 242 qivdlQ~r~k~~~~EnEeL~q~L~~ske~ 270 (306)
T PF04849_consen 242 QIVDLQQRCKQLAAENEELQQHLQASKES 270 (306)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 55555554444455555555544444333
No 452
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.51 E-value=0.64 Score=47.29 Aligned_cols=65 Identities=23% Similarity=0.282 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 90 ESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKMLVD 154 (510)
Q Consensus 90 ~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~ 154 (510)
++++.+|...++++..+..+++.+.+...+..+.++.|+..+..+++.++..+....+.......
T Consensus 465 ~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~ 529 (980)
T KOG0980|consen 465 EEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLA 529 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33344445555555555555555666666666677777777777777777766555544443333
No 453
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.50 E-value=0.17 Score=50.59 Aligned_cols=113 Identities=14% Similarity=0.176 Sum_probs=74.3
Q ss_pred eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEc--CCCCEEEEEecCCcEEEEEcC-------
Q 010470 354 CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLS--RSGNIILTSGRDNLHNLFDIR------- 424 (510)
Q Consensus 354 i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~--~~~~~l~~~~~d~~i~i~d~~------- 424 (510)
+.-+.-+.-++..++.+....+.|||.+.+.....-.....+.|.++.|. |+|+.+++.|..+.|.+|.-.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 45555555666666666667899999988875554443334889999886 688999999999999998542
Q ss_pred --CceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470 425 --SLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI 469 (510)
Q Consensus 425 --~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~ 469 (510)
+...+..+.... ....++...+|.++|.+++..+ +.++|+|-
T Consensus 112 ~p~w~~i~~i~i~~-~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 112 GPSWAPIRKIDISS-HTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred CcccceeEEEEeec-CCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 223333333221 1122345588999998776554 35888873
No 454
>PLN02153 epithiospecifier protein
Probab=96.48 E-value=0.78 Score=43.25 Aligned_cols=147 Identities=12% Similarity=0.115 Sum_probs=71.1
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEeeeeee-----cCc--eeEEEEcCCCCEEEEecCC-----------CcEEE
Q 010470 321 SSRHVVSAAYD-----RTLKVWDLHKGYCVNTIIF-----HSN--CNALAFSMDGQTIFSGHID-----------GNLRL 377 (510)
Q Consensus 321 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~-----~~~--i~~i~~~~~~~~l~~~~~d-----------g~i~i 377 (510)
++.+++.|+.+ ..+.+||+.+......-.. +.. ..+++. .++++++.|+.+ ..+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEE
Confidence 46677777753 3578899887654322111 111 122232 356666666643 24778
Q ss_pred EECCCCceeeeeccc-----ccccEEEEEEcCCCCEEEEEecC-------------CcEEEEEcCCceeeeEeecCCCee
Q 010470 378 WDIQTGKLLSEVAAH-----SLAAVTSISLSRSGNIILTSGRD-------------NLHNLFDIRSLEVCGSLRATGNRV 439 (510)
Q Consensus 378 ~d~~~~~~~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~d-------------~~i~i~d~~~~~~~~~~~~~~~~~ 439 (510)
||+.+.+-.. +... ..... +++. -++++++.++.+ +.+.+||+.+.+-...-.....+.
T Consensus 164 yd~~~~~W~~-l~~~~~~~~~r~~~-~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~ 240 (341)
T PLN02153 164 YNIADGKWVQ-LPDPGENFEKRGGA-GFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPS 240 (341)
T ss_pred EECCCCeEee-CCCCCCCCCCCCcc-eEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCC
Confidence 8987654221 1111 10111 2222 245655555422 468889987654332211100011
Q ss_pred ecCceeEEEcCCCCEEEEEcCC--------------CeEEEEeCCCc
Q 010470 440 ASNWSRSCISPDESYVAAGSAD--------------GSVYIWSISKA 472 (510)
Q Consensus 440 ~~~~~~~~~s~~~~~l~~~~~d--------------g~i~iwd~~~~ 472 (510)
.. ....+...++.+++.|+.. ..|..||+.+.
T Consensus 241 ~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~ 286 (341)
T PLN02153 241 AR-SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL 286 (341)
T ss_pred Cc-ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence 10 0112233457777777742 25788887654
No 455
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.45 E-value=0.83 Score=47.93 Aligned_cols=11 Identities=18% Similarity=0.329 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 010470 8 REAIKHALKAL 18 (510)
Q Consensus 8 ~~~~~~~~~~~ 18 (510)
...|+.+++.|
T Consensus 1517 ~~~I~e~v~sL 1527 (1758)
T KOG0994|consen 1517 TGEIQERVASL 1527 (1758)
T ss_pred HHHHHHHHHhc
Confidence 33444444443
No 456
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.43 E-value=0.9 Score=43.36 Aligned_cols=81 Identities=14% Similarity=0.205 Sum_probs=57.9
Q ss_pred eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCC----------------C--EEEEEecC
Q 010470 354 CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSG----------------N--IILTSGRD 415 (510)
Q Consensus 354 i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~----------------~--~l~~~~~d 415 (510)
+.+++.+|++++.++...-|.|.++|+.++..++.+++.....+.-+.....+ . +++-.-.-
T Consensus 310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprR 389 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRR 389 (415)
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccC
Confidence 78899999999999988889999999999988877776543333322222111 1 23345577
Q ss_pred CcEEEEEcCCceeeeEeec
Q 010470 416 NLHNLFDIRSLEVCGSLRA 434 (510)
Q Consensus 416 ~~i~i~d~~~~~~~~~~~~ 434 (510)
|.|.||.++.+..+..+..
T Consensus 390 g~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 390 GILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred CeEEEEecCCCCEEEEEEe
Confidence 8999999998877666543
No 457
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.42 E-value=0.011 Score=36.53 Aligned_cols=35 Identities=14% Similarity=0.243 Sum_probs=30.2
Q ss_pred ecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCce
Q 010470 350 FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL 385 (510)
Q Consensus 350 ~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 385 (510)
....|.+++|+|....|+.|+.+|.|.+|.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3456899999999999999999999999998 5543
No 458
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.41 E-value=0.55 Score=40.63 Aligned_cols=6 Identities=33% Similarity=0.606 Sum_probs=2.1
Q ss_pred HHHHHH
Q 010470 55 ETELQQ 60 (510)
Q Consensus 55 ~~el~~ 60 (510)
+.++..
T Consensus 37 ~~e~e~ 42 (239)
T COG1579 37 KAELEA 42 (239)
T ss_pred HHHHHH
Confidence 333333
No 459
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.40 E-value=0.17 Score=34.55 Aligned_cols=52 Identities=25% Similarity=0.289 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 86 LQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEE 137 (510)
Q Consensus 86 ~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~ 137 (510)
++..-..|..|+.+++.++++...|..+-+++..+++.++.++......+..
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444555555555544444444444444444444444444443333
No 460
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=0.46 Score=45.39 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=18.8
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Q 010470 46 EWKEKADNLETELQQCYKAQSRLSEQLVVEVAE 78 (510)
Q Consensus 46 ~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~ 78 (510)
.|+++.+.|+.+++.+........+.+.+....
T Consensus 47 ~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~ 79 (772)
T KOG0999|consen 47 DLKQQLEELEAEYDLARTELDQTKEALGQYRSQ 79 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677777776665555555554444443333
No 461
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.34 E-value=0.74 Score=48.26 Aligned_cols=15 Identities=40% Similarity=0.826 Sum_probs=8.0
Q ss_pred EEEcCCCCEEEEecC
Q 010470 357 LAFSMDGQTIFSGHI 371 (510)
Q Consensus 357 i~~~~~~~~l~~~~~ 371 (510)
.++.+||..++.++.
T Consensus 623 ~aytldg~~~~~~g~ 637 (1074)
T KOG0250|consen 623 KAYTLDGRQIFAGGP 637 (1074)
T ss_pred eeeccCccccccCCC
Confidence 345556665555544
No 462
>PRK10115 protease 2; Provisional
Probab=96.33 E-value=1.7 Score=45.27 Aligned_cols=111 Identities=11% Similarity=-0.025 Sum_probs=65.4
Q ss_pred cceeEEEEecCCCEEEEEeCC-----CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCC-----CcEEEE
Q 010470 268 GSVLDLAITHDNRSVIAASSS-----NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD-----RTLKVW 337 (510)
Q Consensus 268 ~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d-----g~i~iw 337 (510)
-.+..+.|+||+++|+.+... ..|++.|+.+|..+...-.... ..+.|.+++..++++...+ ..|+.+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 356678899999988876432 3688999988864322211111 4589998444444544322 368888
Q ss_pred ECCCC--eEeeeeeecCc-ee-EEEEcCCCCEEEEec---CCCcEEEEEC
Q 010470 338 DLHKG--YCVNTIIFHSN-CN-ALAFSMDGQTIFSGH---IDGNLRLWDI 380 (510)
Q Consensus 338 d~~~~--~~~~~~~~~~~-i~-~i~~~~~~~~l~~~~---~dg~i~i~d~ 380 (510)
++.++ .-...+..... .. .+..+.++++++..+ .++.+.+|+.
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 88877 22233332222 22 333344788766433 3457888885
No 463
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.32 E-value=0.54 Score=49.19 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=6.8
Q ss_pred EEcCCCCEEEEEec
Q 010470 401 SLSRSGNIILTSGR 414 (510)
Q Consensus 401 ~~~~~~~~l~~~~~ 414 (510)
+|.+||..+..++.
T Consensus 624 aytldg~~~~~~g~ 637 (1074)
T KOG0250|consen 624 AYTLDGRQIFAGGP 637 (1074)
T ss_pred eeccCccccccCCC
Confidence 44555555444443
No 464
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=0.054 Score=56.12 Aligned_cols=143 Identities=12% Similarity=0.016 Sum_probs=89.3
Q ss_pred ceeEEEEcCCCCEEEEe--cCCCcEEEEECCCCceee-----eec-----ccccccEEEEEEcCCCC-EEEEEecCCcEE
Q 010470 353 NCNALAFSMDGQTIFSG--HIDGNLRLWDIQTGKLLS-----EVA-----AHSLAAVTSISLSRSGN-IILTSGRDNLHN 419 (510)
Q Consensus 353 ~i~~i~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~-----~~~-----~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~ 419 (510)
.+..+.+.+|+...++. +.+-.|+.||+++..... .+. ........++.|+|.-. ..+++..|+.|.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 35566666777655543 333478999997542211 011 11124566788888643 456677888888
Q ss_pred EEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccc----cCcCEEEEEEeCCCC
Q 010470 420 LFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE----HTAPVLSCSWSGLGK 495 (510)
Q Consensus 420 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~ 495 (510)
+..+.-... .....+.....++++|+|.|+.+++|..+|++.-|.. ..+....+.+ ....|.+|+|-..-.
T Consensus 182 V~~~~~~~~----~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 182 VKSTKQLAQ----NVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQE 256 (1405)
T ss_pred hhhhhhhhh----hhcccCcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEeccee
Confidence 876653211 1122344445567999999999999999999998873 3444343332 246799999987766
Q ss_pred cEEEe
Q 010470 496 PLASA 500 (510)
Q Consensus 496 ~l~s~ 500 (510)
++++-
T Consensus 257 flvvy 261 (1405)
T KOG3630|consen 257 FLVVY 261 (1405)
T ss_pred EEEEe
Confidence 66653
No 465
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.31 E-value=1.2 Score=43.52 Aligned_cols=26 Identities=15% Similarity=0.337 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHH
Q 010470 47 WKEKADNLETELQQCYKAQSRLSEQL 72 (510)
Q Consensus 47 ~~~~~~~l~~el~~~~k~~~~~~~~l 72 (510)
++.++...+++..++.+....+.+++
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~ 166 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEV 166 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 466
>PLN02153 epithiospecifier protein
Probab=96.30 E-value=1 Score=42.52 Aligned_cols=186 Identities=17% Similarity=0.179 Sum_probs=89.1
Q ss_pred CCCEEEEeeCC-------CeEEEEeCCCCcceeccc-c--ccc---ceeEEEEecCCCEEEEEeCC-----CeEEEEEcC
Q 010470 236 NSARLISGGQD-------KSIKLWDTNTGSLSSTLY-G--CLG---SVLDLAITHDNRSVIAASSS-----NNLYVWDVN 297 (510)
Q Consensus 236 ~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~-~--~~~---~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~ 297 (510)
++.+++.|+.+ ..+.+||+.+..-..... + ... ....+.+ ++.+++.|+.+ ..+.+||+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 45666777653 257888887654322111 0 000 1112222 46666676643 357888887
Q ss_pred CCCeeE--eecC---CCCc-eEEEEEecCCCCEEEEEeCC-----------CcEEEEECCCCeEeeeeeec----Cc-ee
Q 010470 298 SGRVRH--TLTG---HTDK-VCAVDVSKISSRHVVSAAYD-----------RTLKVWDLHKGYCVNTIIFH----SN-CN 355 (510)
Q Consensus 298 ~~~~~~--~~~~---~~~~-v~~i~~~~~~~~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~----~~-i~ 355 (510)
+.+-.. .+.. .... -.++... ++.+++.|+.+ ..+.+||+.+..-...-... .. -.
T Consensus 110 t~~W~~~~~~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~ 187 (341)
T PLN02153 110 KNEWTFLTKLDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGA 187 (341)
T ss_pred CCEEEEeccCCCCCCCCCceeeEEEEE--CCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcc
Confidence 654322 1110 1111 1222222 46677777753 24778898876543321111 11 11
Q ss_pred EEEEcCCCCEEEEecCC-------------CcEEEEECCCCceeeeecc---cccccEEEEEEcCCCCEEEEEecC----
Q 010470 356 ALAFSMDGQTIFSGHID-------------GNLRLWDIQTGKLLSEVAA---HSLAAVTSISLSRSGNIILTSGRD---- 415 (510)
Q Consensus 356 ~i~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~d---- 415 (510)
+++. .++++++.|+.+ ..+.+||+.+.+-...-.. +......++ ...++.+++.|+..
T Consensus 188 ~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~-~~~~~~iyv~GG~~~~~~ 265 (341)
T PLN02153 188 GFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAH-AVVGKYIIIFGGEVWPDL 265 (341)
T ss_pred eEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeee-EEECCEEEEECcccCCcc
Confidence 2222 256666655432 4588899876643321110 110111222 22246677777742
Q ss_pred ----------CcEEEEEcCCce
Q 010470 416 ----------NLHNLFDIRSLE 427 (510)
Q Consensus 416 ----------~~i~i~d~~~~~ 427 (510)
+.+..||+.+..
T Consensus 266 ~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 266 KGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred ccccccccccccEEEEEcCccE
Confidence 257788887544
No 467
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=96.30 E-value=0.96 Score=42.26 Aligned_cols=106 Identities=10% Similarity=0.093 Sum_probs=52.9
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEe---eeee-ecCc--eeEEEEcCCCCEEEEecC-----CCcEEEEECCCCc
Q 010470 321 SSRHVVSAAYD-----RTLKVWDLHKGYCV---NTII-FHSN--CNALAFSMDGQTIFSGHI-----DGNLRLWDIQTGK 384 (510)
Q Consensus 321 ~~~~l~s~~~d-----g~i~iwd~~~~~~~---~~~~-~~~~--i~~i~~~~~~~~l~~~~~-----dg~i~i~d~~~~~ 384 (510)
++.+++.|+.+ ..+..||+.+.... ..+. .+.. -.+++. -++.+.+.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 45666777754 35677787665531 1111 1111 122222 25666666664 2358889987654
Q ss_pred eeeeecccccccEEEEEEcCCCCEEEEEecCC----cEEEEEcCCce
Q 010470 385 LLSEVAAHSLAAVTSISLSRSGNIILTSGRDN----LHNLFDIRSLE 427 (510)
Q Consensus 385 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~----~i~i~d~~~~~ 427 (510)
-...-...............++++.+.|+.++ .+.+||+.+..
T Consensus 151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 22211111101111222234567777777653 35678887654
No 468
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.26 E-value=1 Score=42.16 Aligned_cols=230 Identities=16% Similarity=0.144 Sum_probs=117.6
Q ss_pred ceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe---eEee----cCCCCceEEEEEecC--CCCEEEEEeCC--------
Q 010470 269 SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV---RHTL----TGHTDKVCAVDVSKI--SSRHVVSAAYD-------- 331 (510)
Q Consensus 269 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~----~~~~~~v~~i~~~~~--~~~~l~s~~~d-------- 331 (510)
..+.|+|.|||+.++ +...|.|++++ ..+.. +..+ .........++++|. .+.+|+.....
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 357899999987655 56699999999 44443 2222 223456789999983 23444433331
Q ss_pred -CcEEEEECCCC-------eEe-eeeee----cCceeEEEEcCCCCEEEEecCC-------------CcEEEEECCCCce
Q 010470 332 -RTLKVWDLHKG-------YCV-NTIIF----HSNCNALAFSMDGQTIFSGHID-------------GNLRLWDIQTGKL 385 (510)
Q Consensus 332 -g~i~iwd~~~~-------~~~-~~~~~----~~~i~~i~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~~ 385 (510)
..|.-|....+ +.+ ..... .+....+.|.|||.+.++.+.. |.|.-.+.. ++.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~ 159 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSI 159 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcC
Confidence 24544544333 111 11122 2336779999999766654432 334444432 221
Q ss_pred -------------eeeecccccccEEEEEEcCC-CCEEEEEe-cCCcEEEEEcCCcee----------------------
Q 010470 386 -------------LSEVAAHSLAAVTSISLSRS-GNIILTSG-RDNLHNLFDIRSLEV---------------------- 428 (510)
Q Consensus 386 -------------~~~~~~~~~~~i~~i~~~~~-~~~l~~~~-~d~~i~i~d~~~~~~---------------------- 428 (510)
...+... ......++|+|. |.++++-. .++.=.|.-+..+..
T Consensus 160 p~dnP~~~~~~~~~~i~A~G-lRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~ 238 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYG-LRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS 238 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred CCCCccccCCCceEEEEEeC-CCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence 0111111 145678999998 66555432 222222222221111
Q ss_pred -------eeEeecCCCeeecCceeEEEc-------CCCCEEEEEcCCCeEEEEeCCCcceee----cccccCcCEEEEEE
Q 010470 429 -------CGSLRATGNRVASNWSRSCIS-------PDESYVAAGSADGSVYIWSISKADIVR----TLKEHTAPVLSCSW 490 (510)
Q Consensus 429 -------~~~~~~~~~~~~~~~~~~~~s-------~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~ 490 (510)
...+..+ .....+.|- -.|.+|++.-..+.|....+..+..+. .+......+.++++
T Consensus 239 ~~~~~~P~~~~~~~-----~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~ 313 (331)
T PF07995_consen 239 CPGFVPPVFAYPPH-----SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQ 313 (331)
T ss_dssp -TTS---SEEETTT-------EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEE
T ss_pred CCCcCccceeecCc-----cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEE
Confidence 0001111 011223332 145677777767788888876443221 12334457999999
Q ss_pred eCCCCcEEEeeCCCeEE
Q 010470 491 SGLGKPLASADKNGVVC 507 (510)
Q Consensus 491 ~~~~~~l~s~~~dg~i~ 507 (510)
.|||.+.++.+.+|.|+
T Consensus 314 ~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 314 GPDGALYVSDDSDGKIY 330 (331)
T ss_dssp ETTSEEEEEE-TTTTEE
T ss_pred cCCCeEEEEECCCCeEe
Confidence 99999888888888875
No 469
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=96.25 E-value=0.21 Score=34.04 Aligned_cols=61 Identities=21% Similarity=0.278 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 82 SKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKA 142 (510)
Q Consensus 82 ~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~ 142 (510)
+...++..-..|.-|+.++++++++...|..+.+.+....+.|..+..+++.+...-+.++
T Consensus 9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerL 69 (79)
T PRK15422 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555556666666666666666666655555555555555555554444433333
No 470
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.25 E-value=0.89 Score=46.30 Aligned_cols=104 Identities=15% Similarity=0.116 Sum_probs=64.2
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 46 EWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVV 125 (510)
Q Consensus 46 ~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~ 125 (510)
.+..++..|+.||..+....+...............+....+..+.+...++.++.+++.+-..|...+.++..++-.|+
T Consensus 31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQ 110 (717)
T PF09730_consen 31 YLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQ 110 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 56777888888887766555555544444444444555556666666666777777777766677777777777766666
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHH
Q 010470 126 SENQQIRA---QLEEMTMKAKNAEAEN 149 (510)
Q Consensus 126 ~e~~~l~~---~~~~~~~~~~~~~~~~ 149 (510)
+....|+. +++.+.-.++.++++.
T Consensus 111 Kqvs~Lk~sQvefE~~Khei~rl~Ee~ 137 (717)
T PF09730_consen 111 KQVSVLKQSQVEFEGLKHEIKRLEEEI 137 (717)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 66555533 3444444455554443
No 471
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=96.23 E-value=0.61 Score=39.64 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=6.0
Q ss_pred HHHHHHHHhhhhhHHH
Q 010470 57 ELQQCYKAQSRLSEQL 72 (510)
Q Consensus 57 el~~~~k~~~~~~~~l 72 (510)
++.+.+....++++++
T Consensus 82 e~~~~~~~l~~l~~el 97 (191)
T PF04156_consen 82 ELSELQQQLQQLQEEL 97 (191)
T ss_pred hHHhHHHHHHHHHHHH
Confidence 3333333333333333
No 472
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.23 E-value=0.74 Score=46.04 Aligned_cols=43 Identities=35% Similarity=0.463 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 112 TELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKMLVD 154 (510)
Q Consensus 112 ~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~ 154 (510)
.+++...+..+....|.++++.++.+++.++.++-.+...+..
T Consensus 472 t~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ 514 (1118)
T KOG1029|consen 472 TEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNH 514 (1118)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3345555555666778888888888888877777666554443
No 473
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.23 E-value=0.74 Score=42.15 Aligned_cols=33 Identities=15% Similarity=0.385 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 112 TELEEKIKALELVVSENQQIRAQLEEMTMKAKN 144 (510)
Q Consensus 112 ~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~ 144 (510)
.++.+...+++..+.+...++.++..+...++.
T Consensus 211 ~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~ 243 (312)
T smart00787 211 EKLKKLLQEIMIKVKKLEELEEELQELESKIED 243 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344444444333333
No 474
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.22 E-value=0.2 Score=42.55 Aligned_cols=38 Identities=18% Similarity=0.194 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 112 TELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAEN 149 (510)
Q Consensus 112 ~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~ 149 (510)
.++++....+..|+.++++|+.++..++.+.+.++.++
T Consensus 125 ~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 125 QKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444445444444444444443333
No 475
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.59 Score=46.70 Aligned_cols=30 Identities=23% Similarity=0.171 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 010470 47 WKEKADNLETELQQCYKAQSRLSEQLVVEV 76 (510)
Q Consensus 47 ~~~~~~~l~~el~~~~k~~~~~~~~l~~~~ 76 (510)
+..+...|+.||..+.-.+.++.++|...+
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr 464 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVR 464 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhe
Confidence 444555566666666656666665554433
No 476
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.33 Score=40.46 Aligned_cols=173 Identities=14% Similarity=0.121 Sum_probs=97.0
Q ss_pred CCCEEEEeeC--CCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEE-eCCCeEEEEEcCCCCeeEeecCCCCce
Q 010470 236 NSARLISGGQ--DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAA-SSSNNLYVWDVNSGRVRHTLTGHTDKV 312 (510)
Q Consensus 236 ~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v 312 (510)
+|.++.+.+. ...|++||+.+|+.+.+-.-....+..=-...-+.++..- -.+|....||.++-+.+..+. ..+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 4566666654 3469999999988765433221122211111223334333 367888899988887776665 33444
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec------CceeEEEEcCCCCEEEEecCCCcEEEEECCCCcee
Q 010470 313 CAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH------SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL 386 (510)
Q Consensus 313 ~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 386 (510)
+.++. ++..++.++...++..-|..+-....++... ...+.+.|- +|...+-.-.+..|...|..+|+.+
T Consensus 134 WgLt~---d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~ 209 (262)
T COG3823 134 WGLTS---DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVV 209 (262)
T ss_pred eeeec---CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEE
Confidence 55543 3334555544567777777654433333221 224555553 6665554444556666777777766
Q ss_pred eeecc-----------cccccEEEEEEcCCCCEEEEEe
Q 010470 387 SEVAA-----------HSLAAVTSISLSRSGNIILTSG 413 (510)
Q Consensus 387 ~~~~~-----------~~~~~i~~i~~~~~~~~l~~~~ 413 (510)
..+.. .+....+.|++.|++..++..+
T Consensus 210 ~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 210 AWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 54432 1224577899999875554443
No 477
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=96.17 E-value=0.42 Score=41.38 Aligned_cols=88 Identities=10% Similarity=0.135 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 51 ADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQ 130 (510)
Q Consensus 51 ~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~ 130 (510)
+..++..+.+..+.+.++.+.+....+ -...+++..+++..|..|...+.+++++....+..+...+..++.|+..
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e~----ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~ 78 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLEN----EEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNK 78 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544444444333322222 2233333344444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHH
Q 010470 131 IRAQLEEMTMKA 142 (510)
Q Consensus 131 l~~~~~~~~~~~ 142 (510)
.+..+..+...+
T Consensus 79 ~~~~i~r~~eey 90 (230)
T PF10146_consen 79 RQEKIQRLYEEY 90 (230)
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 478
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.17 E-value=1.3 Score=42.41 Aligned_cols=149 Identities=13% Similarity=0.098 Sum_probs=80.9
Q ss_pred eeEEEEcCCCCEEEEecCCCcEEEEECCCCcee-eeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeee--
Q 010470 354 CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL-SEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCG-- 430 (510)
Q Consensus 354 i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-- 430 (510)
...+..+++|.++++|.....++-|| .+... ..........+.++.+.+++..++++ ..|.+. +....+..-.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence 34456677887777766533233344 33321 22333333678999999999888776 445443 3333332110
Q ss_pred EeecCC-CeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeeccc---ccCcCEEEEEEeCCCCcEEEeeCCCeE
Q 010470 431 SLRATG-NRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLK---EHTAPVLSCSWSGLGKPLASADKNGVV 506 (510)
Q Consensus 431 ~~~~~~-~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i 506 (510)
.+.... ......+..+.+.+++..+++|. +|.+.... ..|+...... .-..+.+.+.|.++++.+++ +.+|.|
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~-~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~i 393 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEAWAAGG-SGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVL 393 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcEEEEEC-CCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEE
Confidence 111111 11112244477888877766654 67565553 5555433332 23456889999877665555 467887
Q ss_pred EEc
Q 010470 507 CVW 509 (510)
Q Consensus 507 ~iw 509 (510)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 655
No 479
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=96.15 E-value=0.74 Score=39.82 Aligned_cols=67 Identities=21% Similarity=0.266 Sum_probs=38.6
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 46 EWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKT 112 (510)
Q Consensus 46 ~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~ 112 (510)
...++|..|+..|+.+.|.+..-.=+|......++..++...+....+..|+.++..+.+.+..|+.
T Consensus 15 ~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek 81 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEK 81 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHH
Confidence 5677888888888887777766655555555554444444444444444455555444444443333
No 480
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.14 E-value=1.2 Score=46.80 Aligned_cols=9 Identities=22% Similarity=0.405 Sum_probs=3.5
Q ss_pred HHHHHHhhh
Q 010470 14 ALKALRKRH 22 (510)
Q Consensus 14 ~~~~~~~~~ 22 (510)
+.++|+.-+
T Consensus 1568 V~eaL~~Ad 1576 (1758)
T KOG0994|consen 1568 VVEALEEAD 1576 (1758)
T ss_pred HHHHHHHHH
Confidence 333444333
No 481
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=96.14 E-value=0.4 Score=37.04 Aligned_cols=112 Identities=8% Similarity=0.170 Sum_probs=72.6
Q ss_pred EEecCCCEEEEEeCCCeEEEEEcCCCC--------eeEeecCCCCceEEEEEecC----CCCEEEEEeCCCcEEEEECCC
Q 010470 274 AITHDNRSVIAASSSNNLYVWDVNSGR--------VRHTLTGHTDKVCAVDVSKI----SSRHVVSAAYDRTLKVWDLHK 341 (510)
Q Consensus 274 ~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~v~~i~~~~~----~~~~l~s~~~dg~i~iwd~~~ 341 (510)
.|......|++++..|.|.|++..... .+..+. ....|++++-.+. ....|+.|+ ...+..||+..
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVEN 82 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEccc
Confidence 455555678888888999999876332 333343 5567777766553 245566665 67899999998
Q ss_pred CeEeeeeeecCceeEEEEcC----CCCEEEEecCCCcEEEEECCCCceeee
Q 010470 342 GYCVNTIIFHSNCNALAFSM----DGQTIFSGHIDGNLRLWDIQTGKLLSE 388 (510)
Q Consensus 342 ~~~~~~~~~~~~i~~i~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~ 388 (510)
..-+..-..+..++++.+-. ....+++|+ +..|.-||....+....
T Consensus 83 N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 83 NSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWT 132 (136)
T ss_pred CchhhhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEE
Confidence 87766666667788877732 234444544 56787788654444433
No 482
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=96.11 E-value=0.23 Score=45.69 Aligned_cols=112 Identities=21% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHH------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 51 ADNLETELQQCYKAQSRLSEQLVVEV------AESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELV 124 (510)
Q Consensus 51 ~~~l~~el~~~~k~~~~~~~~l~~~~------~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l 124 (510)
+..++.++.++.+....+...+.... .....+...++..+.+..++.+++.+++.+..++..++.++..+.+.+
T Consensus 11 ~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 11 LEQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp -------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010470 125 VSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQ 162 (510)
Q Consensus 125 ~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (510)
..+-...-...+.++..+....++...+.........+
T Consensus 91 ~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~ 128 (314)
T PF04111_consen 91 DEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQ 128 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.10 E-value=0.25 Score=49.45 Aligned_cols=111 Identities=18% Similarity=0.283 Sum_probs=74.5
Q ss_pred ceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee--cCceeEEEEc--CCCCEEEEecCCCcEEEEECC-----
Q 010470 311 KVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF--HSNCNALAFS--MDGQTIFSGHIDGNLRLWDIQ----- 381 (510)
Q Consensus 311 ~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~i~~i~~~--~~~~~l~~~~~dg~i~i~d~~----- 381 (510)
...-+.-+. -+...++.+....+.|||.+.+.....-.. ...|.++.|. |+|+.+++.+..+.|.+|.-.
T Consensus 31 ~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 31 NPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344444444 344555555567899999998876555444 5678888885 688988888888899988541
Q ss_pred ----CCceeeee--cccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC
Q 010470 382 ----TGKLLSEV--AAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR 424 (510)
Q Consensus 382 ----~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 424 (510)
+-.++..+ ..+...+|.+..|.++|.+++.++ +.+.|+|-.
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 11233333 334446899999999998777653 467777643
No 484
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.03 E-value=1.3 Score=41.23 Aligned_cols=40 Identities=30% Similarity=0.467 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 100 LTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMT 139 (510)
Q Consensus 100 l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~ 139 (510)
+.+++.++..+..++++..+.+..++.++..+...++.+.
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~ 250 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELE 250 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433334444433333333333
No 485
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=96.02 E-value=0.77 Score=38.90 Aligned_cols=145 Identities=15% Similarity=0.132 Sum_probs=78.5
Q ss_pred CEEEEEeCCCcEEEEECC--CCeEeeeeeecCceeEEEEcCCCCEEEEecCC---C---cEEEE---ECC--CCceee--
Q 010470 323 RHVVSAAYDRTLKVWDLH--KGYCVNTIIFHSNCNALAFSMDGQTIFSGHID---G---NLRLW---DIQ--TGKLLS-- 387 (510)
Q Consensus 323 ~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g---~i~i~---d~~--~~~~~~-- 387 (510)
..++.+...+.|.+|++. .......+..-+.+..+.++..|+++++--.+ . .+++| ... ...++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 455444557889999987 34556666666889999999999999984322 2 45664 221 111111
Q ss_pred -------------------eecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCcee-ee-----EeecCCCeeecC
Q 010470 388 -------------------EVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV-CG-----SLRATGNRVASN 442 (510)
Q Consensus 388 -------------------~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~-----~~~~~~~~~~~~ 442 (510)
.+..+-..++.+++..|-..-|++|+ ++.+.+|.+..... .. .|....-.+...
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~ 187 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN 187 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence 11112224566777777544444444 45788888764333 11 111111111111
Q ss_pred ceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470 443 WSRSCISPDESYVAAGSADGSVYIWSI 469 (510)
Q Consensus 443 ~~~~~~s~~~~~l~~~~~dg~i~iwd~ 469 (510)
+....++--+.|+|..+.. .++++.+
T Consensus 188 ~~p~~v~ic~~yiA~~s~~-ev~Vlkl 213 (215)
T PF14761_consen 188 FKPTQVAICEGYIAVMSDL-EVLVLKL 213 (215)
T ss_pred ceEEEEEEEeeEEEEecCC-EEEEEEE
Confidence 1112233346778777644 4777654
No 486
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.97 E-value=0.17 Score=47.98 Aligned_cols=143 Identities=13% Similarity=0.136 Sum_probs=90.8
Q ss_pred CCCEEE-EEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCC-------EEEEecCCCcEEEEECCC-Cceeeeecc
Q 010470 321 SSRHVV-SAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQ-------TIFSGHIDGNLRLWDIQT-GKLLSEVAA 391 (510)
Q Consensus 321 ~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~-------~l~~~~~dg~i~i~d~~~-~~~~~~~~~ 391 (510)
+..+|+ .|+....++-.|+..|+.+.....+..+ -+.|.|+.+ .-++|-++..|.-.|.+- |..+.....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es 556 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES 556 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence 444444 5566678888999999999999888887 788887532 234566666777778764 322221111
Q ss_pred c---ccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEe
Q 010470 392 H---SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWS 468 (510)
Q Consensus 392 ~---~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd 468 (510)
. ......|..- ....++++++..|.|++||--.......+++.+..+. .+..+.+|++|++.+. ..+.+-|
T Consensus 557 KdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk----~idvta~Gk~ilaTCk-~yllL~d 630 (776)
T COG5167 557 KDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIK----HIDVTANGKHILATCK-NYLLLTD 630 (776)
T ss_pred hhcccccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCccccccee----eeEeecCCcEEEEeec-ceEEEEe
Confidence 1 1122222222 2456899999999999999654444334444444443 3788899999887774 3577777
Q ss_pred CC
Q 010470 469 IS 470 (510)
Q Consensus 469 ~~ 470 (510)
+.
T Consensus 631 ~~ 632 (776)
T COG5167 631 VP 632 (776)
T ss_pred cc
Confidence 54
No 487
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=95.96 E-value=1.5 Score=41.44 Aligned_cols=40 Identities=5% Similarity=-0.070 Sum_probs=20.6
Q ss_pred CcEEEEECCCCeEeeeeeecC--ceeEEEEcCCCCEEEEecC
Q 010470 332 RTLKVWDLHKGYCVNTIIFHS--NCNALAFSMDGQTIFSGHI 371 (510)
Q Consensus 332 g~i~iwd~~~~~~~~~~~~~~--~i~~i~~~~~~~~l~~~~~ 371 (510)
..+.+||..+++....-..+. .........++++++.|+.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 209 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGE 209 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeee
Confidence 468889988765443222221 1111222236777777764
No 488
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.94 E-value=1.3 Score=40.48 Aligned_cols=29 Identities=7% Similarity=0.125 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 103 IRDECSQLKTELEEKIKALELVVSENQQI 131 (510)
Q Consensus 103 l~~~~~~l~~~l~~~~~~~~~l~~e~~~l 131 (510)
++.++..|-.+...+..+++.|..+..+|
T Consensus 149 lqtrl~~l~~qr~ql~aq~qsl~a~~k~L 177 (499)
T COG4372 149 LQTRLKTLAEQRRQLEAQAQSLQASQKQL 177 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 489
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=95.93 E-value=1.1 Score=39.79 Aligned_cols=57 Identities=28% Similarity=0.222 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 46 EWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQI 103 (510)
Q Consensus 46 ~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l 103 (510)
.+-+++..|+.+|..+.+..... ..+.....+...++....++...|.++.++.+.+
T Consensus 135 ~lvq~I~~L~k~le~~~k~~e~~-~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~ 191 (294)
T COG1340 135 ELVQKIKELRKELEDAKKALEEN-EKLKELKAEIDELKKKAREIHEKIQELANEAQEY 191 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888888887765444443 4444444443333333333333333333333333
No 490
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=95.93 E-value=0.38 Score=39.99 Aligned_cols=97 Identities=13% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH-----HHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 51 ADNLETELQQCY-----KAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVV 125 (510)
Q Consensus 51 ~~~l~~el~~~~-----k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~ 125 (510)
+.-.++||..+. |.+..+ -.+-..++....++..+++..++..+|.+++..++.+..++...++.+..++..|.
T Consensus 105 ~elvrkEl~nAlvRAGLktL~~v-~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~Le 183 (290)
T COG4026 105 VELVRKELKNALVRAGLKTLQRV-PEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLE 183 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010470 126 SENQQIRAQLEEMTMKAKNAEAE 148 (510)
Q Consensus 126 ~e~~~l~~~~~~~~~~~~~~~~~ 148 (510)
..++.+..++..+..+...++..
T Consensus 184 E~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 184 EMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHhchhHHHHHHHHHHHhccc
No 491
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.90 E-value=0.67 Score=36.93 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 116 EKIKALELVVSENQQIRAQLEEMTMKAKNA 145 (510)
Q Consensus 116 ~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~ 145 (510)
.+.+.++.|..+.+.....+.....+++.+
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~ 106 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREA 106 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555454444444444
No 492
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=95.89 E-value=1.1 Score=42.71 Aligned_cols=74 Identities=19% Similarity=0.280 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 82 SKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDR 155 (510)
Q Consensus 82 ~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 155 (510)
....+....+++..+-.++.++.+++..|..++-.+.+.+..+..|.+.+..-+......-+.++.+...+.++
T Consensus 210 tN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDk 283 (596)
T KOG4360|consen 210 TNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDK 283 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33334444455555566666666677777777776666666666666666666666555555555555544443
No 493
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.87 E-value=0.66 Score=36.54 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHH
Q 010470 50 KADNLETELQQCYKAQSRLSEQLVV 74 (510)
Q Consensus 50 ~~~~l~~el~~~~k~~~~~~~~l~~ 74 (510)
++..++.++..+.........++..
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~ 28 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQS 28 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333333
No 494
>PRK05560 DNA gyrase subunit A; Validated
Probab=95.87 E-value=3 Score=44.12 Aligned_cols=306 Identities=10% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 010470 84 ALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLE-----EMTMKAKNAEAENKMLVDRWML 158 (510)
Q Consensus 84 ~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 158 (510)
++.+-...++.++++|++++.+++.+++.-|..-.+....+..|+..++.++. .+.... .+.....++.
T Consensus 423 ~L~~LT~~e~~kL~~E~~~l~~ei~~l~~iL~~~~~l~~~i~~EL~~ikkkfg~~RRT~I~~~~--~~i~~edlI~---- 496 (805)
T PRK05560 423 RLQRLTGLERDKIEDEYKELLALIADLKDILASPERLLEIIKEELLEIKEKFGDPRRTEIIEGE--GDIDDEDLIP---- 496 (805)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCceEeeccc--cccchhhccC----
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhhhcchHHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCC
Q 010470 159 QKMQDAERLNEANALYEDMIDRLKASGLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSA 238 (510)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 238 (510)
.-+.++.-+.+|.++.-....-......-.......++....-+..+..+....
T Consensus 497 --------------------------~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~D~l~~~~~~~t~d~ 550 (805)
T PRK05560 497 --------------------------EEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKEDDFVEHLFVASTHDT 550 (805)
T ss_pred --------------------------CCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCCCeeEEEEEecCCCe
Q ss_pred EEEEeeCCCeEEE--EeCCCCcce---------ecccccccceeEEEEe--cCCCEEEEEeCCCeEEEEEcCC-------
Q 010470 239 RLISGGQDKSIKL--WDTNTGSLS---------STLYGCLGSVLDLAIT--HDNRSVIAASSSNNLYVWDVNS------- 298 (510)
Q Consensus 239 ~l~s~~~dg~i~i--wd~~~~~~~---------~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~------- 298 (510)
.++..+....+++ +++...... ..+.....-+..+.+. ++..+++..+.+|.++--++..
T Consensus 551 LllfTs~Grv~~l~v~~iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~ 630 (805)
T PRK05560 551 LLFFTNRGRVYRLKVYEIPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSN 630 (805)
T ss_pred EEEEecCCeEEEEEhhhCcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccC
Q ss_pred CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECC---------CCeEeeeeeecCceeEEEEcCCCC-EEEE
Q 010470 299 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH---------KGYCVNTIIFHSNCNALAFSMDGQ-TIFS 368 (510)
Q Consensus 299 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~---------~~~~~~~~~~~~~i~~i~~~~~~~-~l~~ 368 (510)
|.....+. -.+.+..+.... ....++..+..|.+..+... .|.....+.....+.++...++.. +++.
T Consensus 631 G~~~ikLk-e~D~lv~v~~~~-~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~~il~ 708 (805)
T PRK05560 631 GIIAINLD-EGDELIGVRLTD-GDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVREDSQEILT 708 (805)
T ss_pred CceeeccC-CCCEEEEEEEeC-CCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEcCCCcEEEE
Q ss_pred ecCCCcEEEEEC-------CCCceeeeecccc-cccEEEEEEcCCCCEEEEEecCCcEEEEEc
Q 010470 369 GHIDGNLRLWDI-------QTGKLLSEVAAHS-LAAVTSISLSRSGNIILTSGRDNLHNLFDI 423 (510)
Q Consensus 369 ~~~dg~i~i~d~-------~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~ 423 (510)
.+..|.+....+ +.++.+..+.... ...+..+........++..+.+|.+..++.
T Consensus 709 vTk~G~iKr~~l~e~~~~~R~~kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~ 771 (805)
T PRK05560 709 VTENGYGKRTPVSEYRLQGRGGKGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRV 771 (805)
T ss_pred EEeCCeEEEEEHHHhhccCCCCCcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEH
No 495
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.86 E-value=0.21 Score=47.35 Aligned_cols=138 Identities=18% Similarity=0.210 Sum_probs=87.8
Q ss_pred CCCEEE-EecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCC-------EEEEEecCCcEEEEEcCC-ceeeeEe
Q 010470 362 DGQTIF-SGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGN-------IILTSGRDNLHNLFDIRS-LEVCGSL 432 (510)
Q Consensus 362 ~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-------~l~~~~~d~~i~i~d~~~-~~~~~~~ 432 (510)
+.+.|+ .|.....++-.|+..|+.+..+..+. .+ -+.|.|+.. .-++|-.+..|.-.|.+- +..+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~d--dv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKD--DV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCC--cc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 444444 46666788888999999999998874 33 577777543 123444555666666653 3222222
Q ss_pred ecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCC
Q 010470 433 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKN 503 (510)
Q Consensus 433 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 503 (510)
..........+++ .......||+++|..|.|++||--.......+++-...|..+..+.+|+++++.+..
T Consensus 555 esKdY~tKn~Fss-~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 555 ESKDYKTKNKFSS-GMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred eehhccccccccc-cccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence 2111111112221 233456699999999999999965444455567777889999999999987766554
No 496
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.86 E-value=1 Score=50.60 Aligned_cols=134 Identities=23% Similarity=0.250 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 46 EWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVV 125 (510)
Q Consensus 46 ~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~ 125 (510)
.+...+..++.++.++......+..++.......+.++..+...+..+..++.++..++.++..+..++..+.+....+.
T Consensus 681 ~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~ 760 (1179)
T TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 010470 126 SENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMID 179 (510)
Q Consensus 126 ~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (510)
.+...+...+..++..+..+..+...+...........................
T Consensus 761 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 814 (1179)
T TIGR02168 761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL 814 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=95.84 E-value=0.32 Score=44.75 Aligned_cols=95 Identities=17% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 55 ETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQ 134 (510)
Q Consensus 55 ~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~ 134 (510)
..++.+..+....+.+.-....++++.+++...++.+++.+++.+..++.++..+.-........+...+.++++.+..+
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q 121 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQ 121 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 010470 135 LEEMTMKAKNAEAEN 149 (510)
Q Consensus 135 ~~~~~~~~~~~~~~~ 149 (510)
+......++.++.-+
T Consensus 122 ~~~~~~~L~~L~ktN 136 (314)
T PF04111_consen 122 YEYASNQLDRLRKTN 136 (314)
T ss_dssp HHHHHHHHHCHHT--
T ss_pred HHHHHHHHHHHHhcC
No 498
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=95.84 E-value=1.1 Score=38.98 Aligned_cols=100 Identities=15% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 56 TELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQL 135 (510)
Q Consensus 56 ~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~ 135 (510)
.+|..--.....+...+.......+.-...+++..+++..|..|...+.+++++....+..+...+..++.|+...+..+
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i 83 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKI 83 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010470 136 EEMTMKAKNAEAENKMLVDR 155 (510)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~ 155 (510)
..+...+..+..+-..+...
T Consensus 84 ~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 84 QRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 499
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.84 E-value=0.59 Score=35.72 Aligned_cols=107 Identities=16% Similarity=0.190 Sum_probs=0.0
Q ss_pred HhhcCccccccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 34 IALSRPIISQGSEWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTE 113 (510)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~ 113 (510)
+....|.+.....+...+..++.|+..++.....+..+-....+++-.+.....+... ...++..++.++.+|..+
T Consensus 8 ~~~~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~----~~~~~~~L~~el~~l~~r 83 (120)
T PF12325_consen 8 TSSGGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRA----LKKEVEELEQELEELQQR 83 (120)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 114 LEEKIKALELVVSENQQIRAQLEEMTMKAKN 144 (510)
Q Consensus 114 l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~ 144 (510)
++.+..-+-.-..+.+.|+..+..+..-++.
T Consensus 84 y~t~LellGEK~E~veEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 84 YQTLLELLGEKSEEVEELRADVQDLKEMYRE 114 (120)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
No 500
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.83 E-value=0.0014 Score=60.92 Aligned_cols=147 Identities=10% Similarity=0.130 Sum_probs=0.0
Q ss_pred CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCC-EEEEEecCCcEEEEEcCCceeee
Q 010470 352 SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGN-IILTSGRDNLHNLFDIRSLEVCG 430 (510)
Q Consensus 352 ~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~ 430 (510)
..+....|.|.+.-++.++.+..+..|| +.++........ +....++|+.+|. .++.+-..+.+.+||+.+.....
T Consensus 35 v~pi~~~w~~e~~nlavaca~tiv~~YD-~agq~~le~n~t--g~aldm~wDkegdvlavlAek~~piylwd~n~eytqq 111 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACANTIVIYYD-KAGQVILELNPT--GKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ 111 (615)
T ss_pred cccceeeEecCCCceehhhhhhHHHhhh-hhcceecccCCc--hhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH
Q ss_pred EeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeE
Q 010470 431 SLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVV 506 (510)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i 506 (510)
.-.+......- ..|++.+..++.|...|.+.|++..+.+.......|...+++++|.+.+ +.+.++.|..+
T Consensus 112 LE~gg~~s~sl----l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L 182 (615)
T KOG2247|consen 112 LESGGTSSKSL----LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTL 182 (615)
T ss_pred HhccCcchHHH----HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHH
Done!