Query 010470
Match_columns 510
No_of_seqs 1111 out of 2787
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 07:30:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010470.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010470hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 2.8E-51 9.4E-56 396.5 41.3 288 217-510 100-408 (410)
2 1got_B GT-beta; complex (GTP-b 100.0 9.1E-49 3.1E-53 369.4 48.1 293 213-510 43-340 (340)
3 3ow8_A WD repeat-containing pr 100.0 8.9E-49 3.1E-53 365.7 39.2 288 217-510 24-318 (321)
4 2pbi_B Guanine nucleotide-bind 100.0 5.3E-48 1.8E-52 365.9 43.3 293 214-510 53-354 (354)
5 2ynn_A Coatomer subunit beta'; 100.0 1.2E-47 4.2E-52 355.7 41.7 287 216-507 4-297 (304)
6 3iz6_a 40S ribosomal protein R 100.0 2.4E-48 8.2E-53 372.3 34.6 296 214-510 55-372 (380)
7 4ery_A WD repeat-containing pr 100.0 1.8E-46 6E-51 349.8 43.5 294 215-510 13-309 (312)
8 3frx_A Guanine nucleotide-bind 100.0 1.1E-45 3.9E-50 344.9 40.3 287 215-510 7-314 (319)
9 1erj_A Transcriptional repress 100.0 2.5E-45 8.6E-50 353.0 40.2 281 223-510 62-386 (393)
10 1nr0_A Actin interacting prote 100.0 1.3E-45 4.4E-50 375.3 39.0 307 188-510 162-608 (611)
11 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.1E-45 1.4E-49 345.0 38.2 291 215-510 5-332 (345)
12 2xzm_R RACK1; ribosome, transl 100.0 9.8E-45 3.4E-49 342.4 40.4 287 215-510 11-337 (343)
13 4gqb_B Methylosome protein 50; 100.0 4.5E-45 1.5E-49 343.1 37.0 280 223-510 28-328 (344)
14 4g56_B MGC81050 protein; prote 100.0 2.6E-45 8.8E-50 347.7 35.5 282 222-510 39-340 (357)
15 1nr0_A Actin interacting prote 100.0 4.1E-44 1.4E-48 364.3 42.7 288 217-510 139-564 (611)
16 2hes_X YDR267CP; beta-propelle 100.0 6.9E-44 2.4E-48 334.5 38.9 287 215-510 4-325 (330)
17 2ymu_A WD-40 repeat protein; u 100.0 2.8E-43 9.6E-48 357.0 42.4 301 188-510 276-577 (577)
18 3zwl_B Eukaryotic translation 100.0 5.9E-43 2E-47 333.8 39.2 286 217-510 24-343 (369)
19 3ow8_A WD repeat-containing pr 100.0 7.4E-43 2.5E-47 325.7 37.0 270 188-470 50-320 (321)
20 4aow_A Guanine nucleotide-bind 100.0 3.6E-42 1.2E-46 324.7 42.0 287 216-510 29-334 (340)
21 1vyh_C Platelet-activating fac 100.0 4.7E-43 1.6E-47 338.8 35.5 268 187-469 121-409 (410)
22 1sq9_A Antiviral protein SKI8; 100.0 5.7E-43 1.9E-47 337.7 35.6 286 216-510 7-392 (397)
23 1gxr_A ESG1, transducin-like e 100.0 4.1E-41 1.4E-45 316.9 43.3 281 220-510 46-334 (337)
24 1r5m_A SIR4-interacting protei 100.0 1.6E-42 5.5E-47 337.4 34.5 314 188-510 60-422 (425)
25 3dm0_A Maltose-binding peripla 100.0 6.8E-42 2.3E-46 353.7 40.5 286 217-510 374-690 (694)
26 2ymu_A WD-40 repeat protein; u 100.0 2.8E-41 9.5E-46 342.3 43.1 301 188-510 235-536 (577)
27 3ei3_B DNA damage-binding prot 100.0 1.1E-41 3.8E-46 326.9 35.9 288 215-510 63-379 (383)
28 2pm9_A Protein WEB1, protein t 100.0 1.4E-42 4.7E-47 337.1 29.5 306 193-510 42-411 (416)
29 3vl1_A 26S proteasome regulato 100.0 8.5E-42 2.9E-46 332.0 34.9 308 187-510 69-416 (420)
30 3k26_A Polycomb protein EED; W 100.0 6E-42 2.1E-46 326.5 32.2 284 220-510 13-363 (366)
31 3odt_A Protein DOA1; ubiquitin 100.0 7.3E-41 2.5E-45 311.8 38.9 282 214-510 7-293 (313)
32 1k8k_C P40, ARP2/3 complex 41 100.0 2.4E-41 8.1E-46 323.3 35.3 283 221-510 4-358 (372)
33 1got_B GT-beta; complex (GTP-b 100.0 6E-41 2.1E-45 315.9 36.6 267 187-468 68-340 (340)
34 3i2n_A WD repeat-containing pr 100.0 1.2E-41 4E-46 323.4 32.0 290 214-510 7-350 (357)
35 4gqb_B Methylosome protein 50; 100.0 5.4E-41 1.8E-45 315.4 33.9 247 221-474 78-334 (344)
36 3gre_A Serine/threonine-protei 100.0 3E-41 1E-45 329.9 33.4 294 215-510 52-437 (437)
37 2ynn_A Coatomer subunit beta'; 100.0 1.1E-40 3.7E-45 309.0 34.9 246 259-510 5-256 (304)
38 3frx_A Guanine nucleotide-bind 100.0 2.1E-40 7.3E-45 309.2 36.2 278 187-472 31-318 (319)
39 1r5m_A SIR4-interacting protei 100.0 1.2E-40 3.9E-45 324.3 35.3 280 222-510 42-358 (425)
40 2pbi_B Guanine nucleotide-bind 100.0 5.2E-40 1.8E-44 311.0 37.1 269 187-468 77-354 (354)
41 4e54_B DNA damage-binding prot 100.0 1.1E-40 3.8E-45 325.2 32.2 290 217-510 111-427 (435)
42 3dwl_C Actin-related protein 2 100.0 9.7E-42 3.3E-46 326.7 24.3 282 221-510 7-376 (377)
43 3mkq_A Coatomer beta'-subunit; 100.0 5.5E-40 1.9E-44 346.5 38.0 289 216-509 4-298 (814)
44 2pm9_A Protein WEB1, protein t 100.0 6.1E-41 2.1E-45 325.5 28.2 283 224-510 11-334 (416)
45 3iz6_a 40S ribosomal protein R 100.0 2.6E-40 8.7E-45 316.6 30.8 278 187-473 79-377 (380)
46 2j04_B YDR362CP, TAU91; beta p 100.0 3E-41 1E-45 332.7 25.0 313 186-510 173-514 (524)
47 4aez_A CDC20, WD repeat-contai 100.0 1.4E-39 4.6E-44 314.2 35.6 282 220-510 86-377 (401)
48 4gga_A P55CDC, cell division c 100.0 6.7E-39 2.3E-43 311.2 40.4 273 227-510 107-392 (420)
49 4a11_B DNA excision repair pro 100.0 4.4E-39 1.5E-43 311.5 38.7 293 216-510 34-362 (408)
50 2ovr_B FBW7, F-BOX/WD repeat p 100.0 8.3E-39 2.8E-43 313.2 39.6 300 187-510 130-439 (445)
51 3v7d_B Cell division control p 100.0 1.1E-38 3.7E-43 314.3 40.6 300 187-509 133-459 (464)
52 4g56_B MGC81050 protein; prote 100.0 1.4E-39 4.7E-44 308.4 32.5 249 218-473 87-345 (357)
53 4h5i_A Guanine nucleotide-exch 100.0 6.4E-40 2.2E-44 311.4 30.2 277 226-510 15-340 (365)
54 3sfz_A APAF-1, apoptotic pepti 100.0 1.5E-39 5.2E-44 358.2 37.8 311 189-510 630-1031(1249)
55 3vl1_A 26S proteasome regulato 100.0 5.5E-40 1.9E-44 319.2 28.5 278 226-510 57-362 (420)
56 1yfq_A Cell cycle arrest prote 100.0 9.9E-40 3.4E-44 308.3 28.9 280 219-505 5-315 (342)
57 3v7d_B Cell division control p 100.0 1.6E-38 5.5E-43 313.1 38.7 280 217-510 113-418 (464)
58 1gxr_A ESG1, transducin-like e 100.0 6.9E-39 2.4E-43 301.7 34.1 278 224-510 8-293 (337)
59 3dw8_B Serine/threonine-protei 100.0 6.2E-39 2.1E-43 314.5 34.7 283 223-509 26-442 (447)
60 3mmy_A MRNA export factor; mRN 100.0 6.4E-39 2.2E-43 305.7 33.9 295 211-509 25-342 (368)
61 3sfz_A APAF-1, apoptotic pepti 100.0 8.6E-39 2.9E-43 352.2 39.8 290 216-510 606-910 (1249)
62 2oaj_A Protein SNI1; WD40 repe 100.0 3.9E-39 1.3E-43 339.2 35.4 188 187-387 30-247 (902)
63 4ggc_A P55CDC, cell division c 100.0 7.3E-38 2.5E-42 292.3 39.8 287 213-510 9-312 (318)
64 2xzm_R RACK1; ribosome, transl 100.0 1.6E-38 5.3E-43 299.9 35.2 280 187-473 40-342 (343)
65 3fm0_A Protein CIAO1; WDR39,SG 100.0 9E-39 3.1E-43 301.6 33.4 281 187-478 29-342 (345)
66 4ery_A WD repeat-containing pr 100.0 5E-38 1.7E-42 292.6 37.0 270 187-470 36-311 (312)
67 2hes_X YDR267CP; beta-propelle 100.0 1.9E-38 6.4E-43 297.5 33.7 272 188-471 26-328 (330)
68 1pgu_A Actin interacting prote 100.0 4E-38 1.4E-42 321.6 38.0 305 188-510 175-611 (615)
69 1pgu_A Actin interacting prote 100.0 4.4E-38 1.5E-42 321.2 38.0 302 195-510 38-363 (615)
70 3f3f_A Nucleoporin SEH1; struc 100.0 9.3E-39 3.2E-43 302.1 30.5 287 218-510 4-334 (351)
71 1p22_A F-BOX/WD-repeat protein 100.0 4.5E-38 1.6E-42 306.9 36.1 272 219-510 127-411 (435)
72 2pm7_B Protein transport prote 100.0 5E-38 1.7E-42 290.1 33.8 249 219-470 3-284 (297)
73 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.8E-37 6.1E-42 303.8 39.1 275 217-510 110-388 (445)
74 1erj_A Transcriptional repress 100.0 8.7E-38 3E-42 300.4 36.2 242 225-472 123-390 (393)
75 2oaj_A Protein SNI1; WD40 repe 100.0 6.9E-38 2.3E-42 329.8 36.1 306 188-510 71-658 (902)
76 3mkq_A Coatomer beta'-subunit; 100.0 9.6E-38 3.3E-42 329.3 36.8 308 187-510 26-383 (814)
77 2pm7_B Protein transport prote 100.0 2E-37 7E-42 286.0 33.5 245 261-510 3-282 (297)
78 1sq9_A Antiviral protein SKI8; 100.0 1.9E-37 6.5E-42 299.0 32.0 281 187-473 27-397 (397)
79 3dm0_A Maltose-binding peripla 100.0 5.1E-37 1.7E-41 317.2 36.4 277 187-470 396-692 (694)
80 3bg1_A Protein SEC13 homolog; 100.0 9.9E-38 3.4E-42 290.7 27.8 247 219-470 7-292 (316)
81 4aez_A CDC20, WD repeat-contai 100.0 2.9E-36 9.8E-41 290.9 35.1 272 189-478 106-387 (401)
82 3bg1_A Protein SEC13 homolog; 100.0 3.5E-37 1.2E-41 287.0 26.1 244 262-510 8-290 (316)
83 2aq5_A Coronin-1A; WD40 repeat 100.0 6.6E-37 2.3E-41 295.6 28.7 279 227-510 36-339 (402)
84 3jrp_A Fusion protein of prote 100.0 2.2E-36 7.4E-41 289.5 30.5 253 217-471 3-287 (379)
85 4aow_A Guanine nucleotide-bind 100.0 2E-35 6.9E-40 278.5 36.7 280 187-473 52-339 (340)
86 3zwl_B Eukaryotic translation 100.0 1.7E-35 6E-40 282.0 35.9 274 188-478 46-353 (369)
87 4gga_A P55CDC, cell division c 100.0 3.3E-35 1.1E-39 285.2 36.4 282 193-490 122-414 (420)
88 3ei3_B DNA damage-binding prot 100.0 1.3E-35 4.4E-40 284.7 32.0 270 187-471 87-382 (383)
89 3jrp_A Fusion protein of prote 100.0 1.2E-35 4.1E-40 284.3 31.2 249 257-510 1-284 (379)
90 3i2n_A WD repeat-containing pr 100.0 7E-36 2.4E-40 283.6 28.6 272 189-474 34-356 (357)
91 3k26_A Polycomb protein EED; W 100.0 3.1E-36 1.1E-40 287.0 25.8 267 189-470 37-365 (366)
92 3odt_A Protein DOA1; ubiquitin 100.0 6.9E-35 2.3E-39 271.4 33.9 269 187-478 30-303 (313)
93 3vu4_A KMHSV2; beta-propeller 100.0 5.5E-35 1.9E-39 276.6 33.6 277 217-510 11-333 (355)
94 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.9E-35 1.7E-39 286.7 34.3 281 225-509 4-387 (450)
95 2j04_B YDR362CP, TAU91; beta p 100.0 3.4E-36 1.1E-40 296.8 25.2 269 214-510 123-425 (524)
96 3jro_A Fusion protein of prote 100.0 6.7E-36 2.3E-40 310.5 27.6 252 218-471 2-285 (753)
97 4e54_B DNA damage-binding prot 100.0 1E-35 3.6E-40 290.0 27.3 277 187-475 133-434 (435)
98 3bws_A Protein LP49; two-domai 100.0 2.5E-34 8.4E-39 280.6 35.7 283 218-510 116-429 (433)
99 2aq5_A Coronin-1A; WD40 repeat 100.0 6.4E-35 2.2E-39 281.7 30.3 276 189-474 50-345 (402)
100 2j04_A TAU60, YPL007P, hypothe 100.0 1.5E-35 5.2E-40 284.4 25.5 257 224-510 14-294 (588)
101 1k8k_C P40, ARP2/3 complex 41 100.0 1.1E-34 3.7E-39 277.0 31.1 242 263-510 4-271 (372)
102 3dwl_C Actin-related protein 2 100.0 6.4E-36 2.2E-40 286.2 21.5 240 264-509 8-278 (377)
103 3lrv_A PRE-mRNA-splicing facto 100.0 3.2E-35 1.1E-39 277.3 25.7 265 232-509 43-329 (343)
104 2xyi_A Probable histone-bindin 100.0 2.5E-34 8.5E-39 279.8 31.9 245 261-510 122-407 (430)
105 3gre_A Serine/threonine-protei 100.0 1E-35 3.5E-40 290.7 22.1 265 232-510 34-356 (437)
106 1p22_A F-BOX/WD-repeat protein 100.0 2.9E-34 1E-38 280.0 31.8 277 188-492 145-434 (435)
107 4a11_B DNA excision repair pro 100.0 4.9E-34 1.7E-38 276.0 31.7 316 187-510 57-402 (408)
108 1l0q_A Surface layer protein; 100.0 9.4E-33 3.2E-37 265.6 38.4 276 189-484 5-288 (391)
109 2xyi_A Probable histone-bindin 100.0 8E-34 2.7E-38 276.2 30.5 250 218-472 121-411 (430)
110 1l0q_A Surface layer protein; 100.0 7.3E-33 2.5E-37 266.3 36.8 262 238-510 3-272 (391)
111 4ggc_A P55CDC, cell division c 100.0 2.7E-32 9.3E-37 254.4 36.4 263 193-473 42-317 (318)
112 3jro_A Fusion protein of prote 100.0 7.3E-34 2.5E-38 295.2 28.5 245 261-510 3-282 (753)
113 3dw8_B Serine/threonine-protei 100.0 1.1E-33 3.8E-38 277.1 26.8 242 265-510 26-370 (447)
114 2j04_A TAU60, YPL007P, hypothe 100.0 2.9E-33 9.9E-38 268.7 28.7 278 187-502 28-350 (588)
115 4h5i_A Guanine nucleotide-exch 100.0 2.6E-33 8.9E-38 265.9 26.7 268 195-472 42-344 (365)
116 1yfq_A Cell cycle arrest prote 100.0 5.3E-33 1.8E-37 262.1 28.2 239 262-510 6-279 (342)
117 4gq1_A NUP37; propeller, trans 100.0 8.8E-34 3E-38 272.2 22.2 256 222-506 86-383 (393)
118 3mmy_A MRNA export factor; mRN 100.0 2.7E-31 9.4E-36 252.8 33.8 252 252-510 24-301 (368)
119 3vu4_A KMHSV2; beta-propeller 100.0 1.3E-31 4.4E-36 253.5 28.0 244 251-510 3-268 (355)
120 2w18_A PALB2, fancn, partner a 100.0 3.7E-31 1.3E-35 238.6 28.3 283 217-510 27-354 (356)
121 3f3f_A Nucleoporin SEH1; struc 100.0 1.4E-31 4.6E-36 252.8 25.5 282 187-478 24-344 (351)
122 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5.4E-31 1.8E-35 258.0 29.5 236 267-510 4-336 (450)
123 3lrv_A PRE-mRNA-splicing facto 100.0 6.8E-32 2.3E-36 254.5 20.2 226 274-510 43-289 (343)
124 1nir_A Nitrite reductase; hemo 100.0 6.3E-30 2.1E-34 254.2 34.7 304 191-510 154-511 (543)
125 3bws_A Protein LP49; two-domai 100.0 1.2E-29 4.2E-34 247.3 35.3 243 220-471 164-432 (433)
126 2hqs_A Protein TOLB; TOLB, PAL 100.0 6.1E-29 2.1E-33 239.9 26.7 276 224-510 61-384 (415)
127 2hqs_A Protein TOLB; TOLB, PAL 100.0 2.3E-28 7.9E-33 235.9 30.6 278 197-495 94-410 (415)
128 1nir_A Nitrite reductase; hemo 100.0 3.1E-28 1.1E-32 242.0 30.0 274 232-510 144-455 (543)
129 2w18_A PALB2, fancn, partner a 100.0 2.1E-28 7.2E-33 220.8 23.8 201 222-423 108-355 (356)
130 4gq1_A NUP37; propeller, trans 100.0 4.4E-29 1.5E-33 239.6 20.3 232 187-424 102-388 (393)
131 3u4y_A Uncharacterized protein 100.0 5.8E-27 2E-31 219.7 33.8 272 231-510 3-301 (331)
132 2ecf_A Dipeptidyl peptidase IV 100.0 9E-28 3.1E-32 250.4 31.3 281 225-510 36-410 (741)
133 3vgz_A Uncharacterized protein 100.0 2.5E-26 8.5E-31 217.4 36.8 271 224-503 39-334 (353)
134 1ri6_A Putative isomerase YBHE 100.0 2.3E-26 7.7E-31 216.7 29.8 269 239-510 7-305 (343)
135 2ojh_A Uncharacterized protein 99.9 4.2E-26 1.4E-30 209.9 24.9 253 242-504 17-293 (297)
136 1pby_B Quinohemoprotein amine 99.9 6.7E-26 2.3E-30 212.9 26.7 262 238-510 2-307 (337)
137 1xfd_A DIP, dipeptidyl aminope 99.9 2E-26 6.8E-31 239.6 23.8 280 227-510 18-390 (723)
138 2ecf_A Dipeptidyl peptidase IV 99.9 9.2E-26 3.2E-30 235.2 27.7 273 227-509 110-455 (741)
139 3u4y_A Uncharacterized protein 99.9 2.1E-24 7.1E-29 202.3 32.7 272 189-474 13-307 (331)
140 3o4h_A Acylamino-acid-releasin 99.9 2.8E-25 9.6E-30 224.8 27.9 271 225-510 21-312 (582)
141 1xfd_A DIP, dipeptidyl aminope 99.9 2.9E-25 1E-29 230.8 28.0 294 193-500 34-427 (723)
142 1ri6_A Putative isomerase YBHE 99.9 2.1E-24 7.3E-29 203.1 31.0 288 192-495 11-335 (343)
143 1k32_A Tricorn protease; prote 99.9 6.4E-25 2.2E-29 236.6 29.6 279 218-510 196-499 (1045)
144 2z3z_A Dipeptidyl aminopeptida 99.9 1.4E-24 4.8E-29 225.0 29.7 275 226-510 82-432 (706)
145 1pby_B Quinohemoprotein amine 99.9 1.5E-24 5.1E-29 203.6 26.3 274 189-482 4-321 (337)
146 2z3z_A Dipeptidyl aminopeptida 99.9 8.3E-25 2.8E-29 226.7 26.9 267 228-503 28-376 (706)
147 3hfq_A Uncharacterized protein 99.9 8.8E-24 3E-28 199.4 31.6 262 246-509 15-313 (347)
148 2ojh_A Uncharacterized protein 99.9 5.4E-24 1.8E-28 195.7 27.2 252 192-462 18-293 (297)
149 3pe7_A Oligogalacturonate lyas 99.9 6.3E-24 2.1E-28 203.7 27.6 291 216-509 21-378 (388)
150 1jmx_B Amine dehydrogenase; ox 99.9 6.5E-24 2.2E-28 200.4 26.9 261 230-510 4-322 (349)
151 1k32_A Tricorn protease; prote 99.9 1.5E-23 5.1E-28 225.9 29.5 275 224-510 294-634 (1045)
152 3vgz_A Uncharacterized protein 99.9 7.4E-23 2.5E-27 193.5 29.2 239 267-510 40-300 (353)
153 3hfq_A Uncharacterized protein 99.9 4E-22 1.4E-26 188.0 29.5 248 222-475 36-323 (347)
154 3scy_A Hypothetical bacterial 99.9 1.4E-21 4.7E-26 185.4 32.1 267 238-509 14-333 (361)
155 2oit_A Nucleoporin 214KDA; NH2 99.9 9.6E-22 3.3E-26 190.2 29.4 200 225-426 36-279 (434)
156 3scy_A Hypothetical bacterial 99.9 3.3E-21 1.1E-25 182.8 32.6 260 224-491 48-360 (361)
157 1z68_A Fibroblast activation p 99.9 6.2E-23 2.1E-27 213.1 22.4 273 230-509 20-387 (719)
158 3c5m_A Oligogalacturonate lyas 99.9 5.4E-22 1.8E-26 190.7 22.5 275 226-509 36-378 (396)
159 1jof_A Carboxy-CIS,CIS-muconat 99.9 2.6E-21 8.9E-26 183.6 26.4 270 239-510 4-338 (365)
160 2oiz_A Aromatic amine dehydrog 99.9 6.8E-21 2.3E-25 179.8 28.6 268 217-495 43-360 (361)
161 1jmx_B Amine dehydrogenase; ox 99.9 5.5E-21 1.9E-25 180.2 28.0 272 189-481 14-335 (349)
162 3o4h_A Acylamino-acid-releasin 99.9 4.8E-22 1.7E-26 201.0 19.5 230 267-510 21-273 (582)
163 1z68_A Fibroblast activation p 99.9 1.7E-21 6E-26 202.2 21.8 299 194-510 34-440 (719)
164 2oit_A Nucleoporin 214KDA; NH2 99.9 6.1E-21 2.1E-25 184.5 22.4 215 247-472 23-279 (434)
165 2oiz_A Aromatic amine dehydrog 99.9 3.3E-20 1.1E-24 175.1 26.2 257 245-510 29-331 (361)
166 1jof_A Carboxy-CIS,CIS-muconat 99.9 3.2E-20 1.1E-24 176.1 26.1 243 224-472 38-342 (365)
167 3fvz_A Peptidyl-glycine alpha- 99.9 1.6E-19 5.6E-24 168.5 29.7 246 224-471 22-322 (329)
168 3azo_A Aminopeptidase; POP fam 99.9 4.1E-20 1.4E-24 190.0 27.1 287 219-509 17-363 (662)
169 4a5s_A Dipeptidyl peptidase 4 99.9 3.1E-20 1.1E-24 192.8 25.5 267 227-500 18-380 (740)
170 2dg1_A DRP35, lactonase; beta 99.9 9E-20 3.1E-24 170.8 25.1 269 226-503 6-300 (333)
171 1q7f_A NHL, brain tumor CG1071 99.9 2E-18 6.8E-23 157.9 31.5 244 222-474 26-283 (286)
172 1q7f_A NHL, brain tumor CG1071 99.9 2E-18 6.7E-23 157.9 31.2 239 264-510 26-277 (286)
173 3fvz_A Peptidyl-glycine alpha- 99.8 6.9E-19 2.4E-23 164.2 27.2 240 267-510 23-319 (329)
174 1qks_A Cytochrome CD1 nitrite 99.8 1.3E-17 4.3E-22 165.2 37.2 286 217-510 189-535 (567)
175 3dsm_A Uncharacterized protein 99.8 3.7E-18 1.3E-22 159.0 30.8 255 245-510 15-299 (328)
176 2z2n_A Virginiamycin B lyase; 99.8 1E-16 3.5E-21 147.3 38.7 276 221-507 10-290 (299)
177 3e5z_A Putative gluconolactona 99.8 1.3E-17 4.4E-22 153.3 31.1 245 217-475 19-290 (296)
178 2gop_A Trilobed protease; beta 99.8 4.7E-18 1.6E-22 160.1 28.6 252 227-509 16-327 (347)
179 3e5z_A Putative gluconolactona 99.8 2.2E-17 7.6E-22 151.7 30.6 234 261-508 21-282 (296)
180 3pe7_A Oligogalacturonate lyas 99.8 7.3E-19 2.5E-23 168.3 20.9 254 251-510 14-326 (388)
181 3dsm_A Uncharacterized protein 99.8 1.6E-17 5.6E-22 154.6 29.3 254 227-491 45-320 (328)
182 3no2_A Uncharacterized protein 99.8 1.6E-17 5.4E-22 150.1 28.0 245 236-488 4-271 (276)
183 4a5s_A Dipeptidyl peptidase 4 99.8 6.6E-19 2.3E-23 182.9 21.4 237 269-509 18-349 (740)
184 1qks_A Cytochrome CD1 nitrite 99.8 7.5E-17 2.6E-21 159.7 33.9 273 234-510 164-474 (567)
185 2dg1_A DRP35, lactonase; beta 99.8 1.4E-16 4.7E-21 149.1 33.8 252 217-470 36-315 (333)
186 1rwi_B Serine/threonine-protei 99.8 5.6E-17 1.9E-21 146.8 28.2 241 227-474 25-267 (270)
187 3azo_A Aminopeptidase; POP fam 99.8 1.2E-17 4E-22 171.7 25.0 246 218-474 60-372 (662)
188 2qc5_A Streptogramin B lactona 99.8 2E-15 6.9E-20 138.7 36.9 275 223-509 17-296 (300)
189 3no2_A Uncharacterized protein 99.8 6.2E-17 2.1E-21 146.2 25.8 212 278-500 4-230 (276)
190 1rwi_B Serine/threonine-protei 99.8 8.3E-17 2.8E-21 145.7 26.1 234 269-510 25-261 (270)
191 2bkl_A Prolyl endopeptidase; m 99.8 1.6E-17 5.6E-22 171.1 22.8 243 223-474 118-400 (695)
192 2xdw_A Prolyl endopeptidase; a 99.8 1E-16 3.6E-21 165.6 28.8 245 223-473 122-416 (710)
193 2mad_H Methylamine dehydrogena 99.8 2E-15 6.8E-20 142.4 34.4 268 233-510 28-347 (373)
194 3c5m_A Oligogalacturonate lyas 99.8 1.1E-17 3.8E-22 160.5 19.2 243 250-501 13-301 (396)
195 2xdw_A Prolyl endopeptidase; a 99.8 2E-16 6.7E-21 163.6 28.6 239 266-510 123-411 (710)
196 3sjl_D Methylamine dehydrogena 99.8 5.4E-16 1.8E-20 144.0 26.4 271 233-510 40-360 (386)
197 2gop_A Trilobed protease; beta 99.8 3.7E-16 1.3E-20 147.0 25.7 231 226-482 59-340 (347)
198 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 8.5E-15 2.9E-19 135.6 31.5 242 222-471 14-299 (314)
199 3c75_H MADH, methylamine dehyd 99.7 8.2E-16 2.8E-20 145.5 24.8 269 235-510 82-399 (426)
200 2mad_H Methylamine dehydrogena 99.7 2.4E-14 8.3E-19 134.9 34.9 249 217-478 59-357 (373)
201 2bkl_A Prolyl endopeptidase; m 99.7 3E-16 1E-20 161.7 22.1 266 235-510 77-394 (695)
202 3sjl_D Methylamine dehydrogena 99.7 3.4E-15 1.2E-19 138.6 26.8 266 215-493 69-384 (386)
203 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 1E-14 3.6E-19 134.9 28.7 237 268-510 18-296 (314)
204 2z2n_A Virginiamycin B lyase; 99.7 4.2E-14 1.4E-18 129.8 32.5 236 265-510 12-252 (299)
205 3hrp_A Uncharacterized protein 99.7 2.7E-14 9.3E-19 136.6 31.5 239 225-469 130-408 (409)
206 2qe8_A Uncharacterized protein 99.7 5.5E-15 1.9E-19 138.5 22.5 261 226-505 17-313 (343)
207 3c75_H MADH, methylamine dehyd 99.7 1.2E-14 4E-19 137.6 24.6 253 215-478 109-409 (426)
208 1yr2_A Prolyl oligopeptidase; 99.7 7.2E-15 2.5E-19 152.5 25.3 266 235-510 116-438 (741)
209 1yr2_A Prolyl oligopeptidase; 99.7 1E-14 3.4E-19 151.4 25.1 243 223-473 160-443 (741)
210 3hrp_A Uncharacterized protein 99.7 7.4E-14 2.5E-18 133.6 28.0 236 268-509 131-406 (409)
211 3dr2_A Exported gluconolactona 99.6 1.4E-13 4.6E-18 126.8 27.9 233 262-508 39-302 (305)
212 2qc5_A Streptogramin B lactona 99.6 1.1E-12 3.8E-17 120.3 33.2 235 266-510 18-257 (300)
213 3g4e_A Regucalcin; six bladed 99.6 5.6E-13 1.9E-17 122.1 29.7 224 269-501 14-260 (297)
214 3g4e_A Regucalcin; six bladed 99.6 1.3E-12 4.3E-17 119.7 31.0 227 223-460 10-261 (297)
215 3dr2_A Exported gluconolactona 99.6 4.9E-13 1.7E-17 123.1 27.1 238 217-468 36-303 (305)
216 2ghs_A AGR_C_1268P; regucalcin 99.6 5.9E-12 2E-16 116.9 33.2 221 227-460 50-291 (326)
217 2ghs_A AGR_C_1268P; regucalcin 99.6 2.9E-12 9.9E-17 118.9 30.4 221 270-501 51-290 (326)
218 3q7m_A Lipoprotein YFGL, BAMB; 99.6 2.1E-12 7.1E-17 122.8 30.1 258 236-510 102-375 (376)
219 1xip_A Nucleoporin NUP159; bet 99.6 5.2E-14 1.8E-18 131.3 18.4 173 227-412 39-231 (388)
220 1yiq_A Quinohemoprotein alcoho 99.6 8.6E-13 3E-17 134.6 27.7 255 236-498 120-533 (689)
221 1kb0_A Quinohemoprotein alcoho 99.6 2.6E-13 8.9E-18 138.2 23.6 268 237-510 77-504 (677)
222 1mda_H Methylamine dehydrogena 99.6 2E-13 6.9E-18 127.1 20.8 247 248-510 47-343 (368)
223 1mda_H Methylamine dehydrogena 99.6 1.2E-13 4.2E-18 128.5 19.4 259 215-492 56-366 (368)
224 2hz6_A Endoplasmic reticulum t 99.6 5.8E-17 2E-21 153.2 -4.3 255 236-509 8-275 (369)
225 1kb0_A Quinohemoprotein alcoho 99.6 2.6E-12 8.8E-17 130.9 28.7 257 236-499 127-536 (677)
226 3iuj_A Prolyl endopeptidase; h 99.5 6.6E-13 2.3E-17 136.4 23.9 240 223-473 126-407 (693)
227 1yiq_A Quinohemoprotein alcoho 99.5 9.2E-13 3.2E-17 134.4 24.2 271 237-510 70-502 (689)
228 3hxj_A Pyrrolo-quinoline quino 99.5 2.6E-12 9E-17 119.6 24.5 269 217-509 51-320 (330)
229 3q7m_A Lipoprotein YFGL, BAMB; 99.5 5.1E-12 1.8E-16 120.0 26.4 259 236-510 52-334 (376)
230 1fwx_A Nitrous oxide reductase 99.5 1.6E-12 5.5E-17 125.6 22.8 217 278-502 100-407 (595)
231 1xip_A Nucleoporin NUP159; bet 99.5 4.4E-13 1.5E-17 125.0 17.3 171 311-500 39-231 (388)
232 2ece_A 462AA long hypothetical 99.5 3.2E-11 1.1E-15 112.6 28.1 226 274-501 88-399 (462)
233 3hxj_A Pyrrolo-quinoline quino 99.5 7.1E-13 2.4E-17 123.5 16.7 258 229-510 23-281 (330)
234 1npe_A Nidogen, entactin; glyc 99.5 1.7E-10 5.8E-15 103.8 31.6 250 238-495 2-263 (267)
235 2ece_A 462AA long hypothetical 99.4 1.2E-10 4E-15 108.9 27.8 223 235-459 93-399 (462)
236 2hz6_A Endoplasmic reticulum t 99.4 7.5E-14 2.6E-18 131.8 5.9 202 278-495 8-216 (369)
237 3iuj_A Prolyl endopeptidase; h 99.4 1.6E-11 5.4E-16 126.2 22.1 233 266-510 127-402 (693)
238 1fwx_A Nitrous oxide reductase 99.4 3.7E-11 1.3E-15 116.2 21.1 234 235-473 99-433 (595)
239 2qe8_A Uncharacterized protein 99.4 1E-11 3.5E-16 116.1 16.2 228 223-468 64-318 (343)
240 1kv9_A Type II quinohemoprotei 99.4 8.6E-11 2.9E-15 119.6 24.0 268 237-510 66-485 (668)
241 2fp8_A Strictosidine synthase; 99.4 8.7E-10 3E-14 102.1 28.6 244 222-471 15-313 (322)
242 2ad6_A Methanol dehydrogenase 99.3 5.5E-10 1.9E-14 111.2 26.6 268 237-510 62-491 (571)
243 1kv9_A Type II quinohemoprotei 99.3 4.6E-10 1.6E-14 114.2 25.9 256 237-500 117-519 (668)
244 2iwa_A Glutamine cyclotransfer 99.3 3.5E-10 1.2E-14 99.4 21.6 200 269-472 22-238 (266)
245 1w6s_A Methanol dehydrogenase 99.3 1.7E-09 5.9E-14 107.5 27.8 270 237-510 62-500 (599)
246 3nol_A Glutamine cyclotransfer 99.3 8.6E-10 2.9E-14 95.6 21.8 194 301-502 33-244 (262)
247 2iwa_A Glutamine cyclotransfer 99.3 1.2E-09 4.1E-14 96.0 23.1 202 301-508 11-232 (266)
248 4a2l_A BT_4663, two-component 99.3 3.4E-08 1.2E-12 103.3 36.5 275 225-509 214-522 (795)
249 2ad6_A Methanol dehydrogenase 99.3 3.7E-09 1.3E-13 105.3 27.6 255 237-499 115-523 (571)
250 3nol_A Glutamine cyclotransfer 99.2 3E-09 1E-13 92.1 23.0 187 270-461 45-245 (262)
251 1npe_A Nidogen, entactin; glyc 99.2 2.7E-08 9.2E-13 89.2 29.6 221 226-453 36-263 (267)
252 2p4o_A Hypothetical protein; p 99.2 4.7E-08 1.6E-12 89.6 31.7 224 268-502 32-277 (306)
253 1w6s_A Methanol dehydrogenase 99.2 5.7E-09 2E-13 103.8 26.0 258 231-496 111-529 (599)
254 2fp8_A Strictosidine synthase; 99.2 1.3E-08 4.3E-13 94.2 26.8 230 269-509 20-309 (322)
255 1flg_A Protein (quinoprotein e 99.2 1.1E-08 3.8E-13 102.0 28.0 256 237-498 117-544 (582)
256 3nok_A Glutaminyl cyclase; bet 99.2 4.3E-09 1.5E-13 91.1 21.5 182 270-459 57-253 (268)
257 3nok_A Glutaminyl cyclase; bet 99.2 5.6E-09 1.9E-13 90.4 22.1 189 217-414 45-254 (268)
258 4a2l_A BT_4663, two-component 99.2 1.8E-07 6.3E-12 97.7 37.7 269 225-505 309-607 (795)
259 3mbr_X Glutamine cyclotransfer 99.2 1.3E-08 4.3E-13 87.5 23.7 194 301-502 11-223 (243)
260 3v64_C Agrin; beta propeller, 99.2 8.3E-08 2.8E-12 89.4 31.3 246 225-479 33-283 (349)
261 1flg_A Protein (quinoprotein e 99.2 1.3E-08 4.6E-13 101.3 26.7 271 237-510 68-513 (582)
262 1k3i_A Galactose oxidase precu 99.2 4.2E-09 1.4E-13 107.4 23.3 271 230-502 190-530 (656)
263 3mbr_X Glutamine cyclotransfer 99.2 2.4E-08 8.3E-13 85.8 23.9 187 268-460 21-223 (243)
264 2p4o_A Hypothetical protein; p 99.1 5.1E-08 1.7E-12 89.4 27.8 235 215-462 22-279 (306)
265 3v65_B Low-density lipoprotein 99.1 1.5E-07 5.1E-12 89.1 29.8 255 227-490 78-337 (386)
266 3v9f_A Two-component system se 99.1 6.3E-07 2.2E-11 93.5 35.4 277 225-510 257-565 (781)
267 3tc9_A Hypothetical hydrolase; 99.1 9.5E-08 3.2E-12 91.7 26.7 237 269-509 138-426 (430)
268 1ijq_A LDL receptor, low-densi 99.0 1.8E-06 6.2E-11 79.2 33.0 227 247-478 10-245 (316)
269 3tc9_A Hypothetical hydrolase; 99.0 2.6E-07 9E-12 88.6 27.9 240 227-470 138-429 (430)
270 4hw6_A Hypothetical protein, I 99.0 4.1E-07 1.4E-11 87.2 28.7 240 226-470 139-432 (433)
271 3v9f_A Two-component system se 99.0 9.7E-07 3.3E-11 92.1 33.2 273 224-506 311-605 (781)
272 3a7p_A Autophagy protein 16; c 99.0 2.2E-08 7.5E-13 75.8 13.7 83 90-172 67-149 (152)
273 2xbg_A YCF48-like protein; pho 99.0 9.4E-06 3.2E-10 74.8 34.8 272 226-510 36-319 (327)
274 3qqz_A Putative uncharacterize 98.9 6.6E-07 2.2E-11 78.1 24.6 203 304-509 21-249 (255)
275 4hw6_A Hypothetical protein, I 98.9 5.8E-07 2E-11 86.2 26.7 238 269-509 140-429 (433)
276 3p5b_L Low density lipoprotein 98.9 7.1E-06 2.4E-10 77.8 33.9 245 239-489 85-338 (400)
277 3sov_A LRP-6, low-density lipo 98.9 1.4E-06 4.8E-11 79.8 28.0 227 246-478 12-245 (318)
278 3qqz_A Putative uncharacterize 98.9 2.2E-06 7.4E-11 74.9 27.1 201 219-423 20-251 (255)
279 3kya_A Putative phosphatase; s 98.9 1.3E-06 4.4E-11 83.8 27.1 247 227-476 140-480 (496)
280 3v64_C Agrin; beta propeller, 98.9 5.4E-06 1.9E-10 77.1 29.1 205 226-433 73-283 (349)
281 3kya_A Putative phosphatase; s 98.8 3.4E-06 1.2E-10 80.9 27.5 238 269-509 140-471 (496)
282 1ijq_A LDL receptor, low-densi 98.8 1.1E-05 3.8E-10 73.9 30.1 219 282-509 4-234 (316)
283 3amr_A 3-phytase; beta-propell 98.8 3.6E-06 1.2E-10 76.2 24.7 196 235-434 38-273 (355)
284 3v65_B Low-density lipoprotein 98.8 5.9E-06 2E-10 78.1 27.6 206 225-433 115-326 (386)
285 2xe4_A Oligopeptidase B; hydro 98.8 1.2E-06 4.1E-11 90.6 24.3 192 227-423 175-398 (751)
286 3sov_A LRP-6, low-density lipo 98.7 7.6E-06 2.6E-10 74.9 26.0 215 288-509 12-234 (318)
287 2xzh_A Clathrin heavy chain 1; 98.7 9.3E-05 3.2E-09 65.6 31.1 251 246-507 48-326 (365)
288 1bpo_A Protein (clathrin); cla 98.7 0.00015 5.2E-09 66.9 32.4 252 246-507 47-325 (494)
289 3p5b_L Low density lipoprotein 98.7 4.8E-05 1.6E-09 72.1 30.3 209 224-433 110-328 (400)
290 2p9w_A MAL S 1 allergenic prot 98.7 2.5E-05 8.4E-10 70.1 26.3 205 221-427 8-267 (334)
291 4a0p_A LRP6, LRP-6, low-densit 98.7 6.2E-05 2.1E-09 75.5 32.5 230 239-477 8-243 (628)
292 3m0c_C LDL receptor, low-densi 98.7 2.4E-05 8.2E-10 80.3 30.0 228 246-478 403-639 (791)
293 1k3i_A Galactose oxidase precu 98.7 2.1E-06 7.3E-11 87.4 21.6 232 226-460 243-530 (656)
294 3amr_A 3-phytase; beta-propell 98.6 1.7E-05 5.7E-10 71.9 24.0 193 278-478 39-271 (355)
295 1n7d_A LDL receptor, low-densi 98.6 4.9E-07 1.7E-11 92.2 15.9 240 246-490 385-633 (699)
296 3s94_A LRP-6, low-density lipo 98.6 0.00011 3.9E-09 73.6 32.5 160 226-386 84-247 (619)
297 4a0p_A LRP6, LRP-6, low-densit 98.6 0.00048 1.7E-08 69.1 36.8 199 226-427 37-239 (628)
298 3s94_A LRP-6, low-density lipo 98.6 5.9E-05 2E-09 75.6 29.4 225 246-477 17-249 (619)
299 2p9w_A MAL S 1 allergenic prot 98.6 2.4E-05 8.4E-10 70.1 22.9 202 306-508 9-260 (334)
300 3m0c_C LDL receptor, low-densi 98.5 0.00017 6E-09 74.0 31.1 207 225-432 423-639 (791)
301 2ism_A Putative oxidoreductase 98.5 0.00014 4.9E-09 67.5 27.2 224 268-501 31-333 (352)
302 2ism_A Putative oxidoreductase 98.5 0.00018 6.1E-09 66.9 27.3 221 226-459 31-333 (352)
303 3a9g_A Putative uncharacterize 98.5 0.00052 1.8E-08 63.7 29.7 228 225-459 28-330 (354)
304 2vpj_A Kelch-like protein 12; 98.4 6.2E-05 2.1E-09 68.4 23.1 226 236-473 14-280 (301)
305 2xe4_A Oligopeptidase B; hydro 98.4 2.6E-05 9E-10 80.6 22.4 192 311-509 175-394 (751)
306 3ei3_A DNA damage-binding prot 98.4 0.00084 2.9E-08 72.1 33.4 278 225-510 553-910 (1158)
307 1n7d_A LDL receptor, low-densi 98.3 5.7E-06 2E-10 84.4 14.6 206 226-434 406-623 (699)
308 3a9g_A Putative uncharacterize 98.3 0.00096 3.3E-08 61.9 28.3 226 268-501 29-330 (354)
309 2xbg_A YCF48-like protein; pho 98.3 0.0013 4.3E-08 60.4 28.9 231 225-468 79-319 (327)
310 3ott_A Two-component system se 98.3 0.004 1.4E-07 64.5 35.8 267 225-506 62-346 (758)
311 2xn4_A Kelch-like protein 2; s 98.3 0.00014 4.9E-09 66.0 21.6 225 237-473 16-278 (302)
312 3ii7_A Kelch-like protein 7; p 98.3 0.00037 1.3E-08 63.4 23.9 222 239-472 14-273 (306)
313 2g8s_A Glucose/sorbosone dehyd 98.2 0.0013 4.6E-08 60.9 25.7 238 268-507 18-348 (353)
314 1zgk_A Kelch-like ECH-associat 98.2 0.00046 1.6E-08 62.9 22.1 226 235-472 23-288 (308)
315 2vpj_A Kelch-like protein 12; 98.1 0.0002 7E-09 65.0 19.1 203 289-503 31-263 (301)
316 3sre_A PON1, serum paraoxonase 98.1 0.00087 3E-08 61.6 22.9 191 270-469 52-296 (355)
317 2g8s_A Glucose/sorbosone dehyd 98.1 0.0032 1.1E-07 58.4 27.2 235 225-464 17-347 (353)
318 3sbq_A Nitrous-oxide reductase 98.1 0.0017 5.8E-08 62.0 23.9 259 239-501 72-453 (638)
319 4asc_A Kelch repeat and BTB do 98.1 0.00096 3.3E-08 60.9 22.3 223 239-473 7-279 (315)
320 2be1_A Serine/threonine-protei 98.1 8.1E-05 2.8E-09 67.7 14.6 194 280-476 11-236 (339)
321 2xn4_A Kelch-like protein 2; s 98.1 0.00039 1.3E-08 63.1 19.4 204 289-504 30-262 (302)
322 3sre_A PON1, serum paraoxonase 98.0 0.0082 2.8E-07 55.1 30.2 199 221-424 45-297 (355)
323 3das_A Putative oxidoreductase 98.0 0.0081 2.8E-07 54.9 26.9 234 218-458 24-325 (347)
324 3ott_A Two-component system se 98.0 0.021 7.1E-07 59.2 35.8 261 225-504 21-299 (758)
325 3ii7_A Kelch-like protein 7; p 98.0 0.00094 3.2E-08 60.7 20.8 211 281-503 14-257 (306)
326 1xi4_A Clathrin heavy chain; a 98.0 0.0006 2E-08 72.5 20.4 250 246-506 47-324 (1630)
327 3ei3_A DNA damage-binding prot 97.9 0.025 8.6E-07 60.8 32.1 238 225-470 374-635 (1158)
328 4gdk_C APG16-like 1, autophagy 97.9 3.8E-06 1.3E-10 46.4 1.3 30 11-40 7-36 (36)
329 2woz_A Kelch repeat and BTB do 97.8 0.0035 1.2E-07 57.3 21.7 223 239-473 18-289 (318)
330 1zgk_A Kelch-like ECH-associat 97.8 0.0016 5.4E-08 59.2 19.3 215 278-504 24-273 (308)
331 2uvk_A YJHT; unknown function, 97.8 0.002 6.9E-08 60.0 20.1 233 236-478 19-349 (357)
332 4asc_A Kelch repeat and BTB do 97.8 0.0022 7.7E-08 58.4 19.9 210 282-503 8-253 (315)
333 2be1_A Serine/threonine-protei 97.7 0.0024 8.2E-08 58.1 17.7 189 238-430 11-236 (339)
334 1cru_A Protein (soluble quinop 97.7 0.046 1.6E-06 52.4 29.0 104 225-329 26-162 (454)
335 1bpo_A Protein (clathrin); cla 97.6 0.039 1.3E-06 51.2 29.6 235 230-475 70-335 (494)
336 2xzh_A Clathrin heavy chain 1; 97.6 0.031 1.1E-06 49.8 30.5 234 231-475 72-336 (365)
337 2woz_A Kelch repeat and BTB do 97.6 0.0064 2.2E-07 55.4 19.5 205 290-503 25-263 (318)
338 3das_A Putative oxidoreductase 97.6 0.044 1.5E-06 50.1 29.5 231 267-500 31-325 (347)
339 1cru_A Protein (soluble quinop 97.6 0.062 2.1E-06 51.5 29.2 143 268-412 27-245 (454)
340 1tl2_A L10, protein (tachylect 97.6 0.0058 2E-07 51.1 16.2 176 322-507 4-204 (236)
341 3b7f_A Glycosyl hydrolase, BNR 97.5 0.072 2.5E-06 50.1 28.4 260 226-491 55-391 (394)
342 2v71_A Nuclear distribution pr 97.5 0.018 6.3E-07 46.3 17.5 73 82-154 47-123 (189)
343 2uvk_A YJHT; unknown function, 97.4 0.0074 2.5E-07 56.0 17.6 219 278-504 19-327 (357)
344 3pbp_A Nucleoporin NUP82; beta 97.4 0.032 1.1E-06 51.7 20.1 145 321-467 31-208 (452)
345 1tl2_A L10, protein (tachylect 97.3 0.01 3.6E-07 49.6 15.2 176 278-465 3-204 (236)
346 3s25_A Hypothetical 7-bladed b 97.3 0.083 2.8E-06 47.4 25.6 209 234-471 22-255 (302)
347 2zwa_A Leucine carboxyl methyl 97.3 0.026 8.7E-07 57.6 21.1 192 235-429 396-639 (695)
348 2zwa_A Leucine carboxyl methyl 97.3 0.042 1.4E-06 56.0 22.6 196 277-473 396-637 (695)
349 3pbp_A Nucleoporin NUP82; beta 97.2 0.039 1.3E-06 51.2 18.7 142 276-421 29-208 (452)
350 2v71_A Nuclear distribution pr 97.1 0.073 2.5E-06 42.8 21.0 53 93-145 90-142 (189)
351 3sbq_A Nitrous-oxide reductase 97.1 0.22 7.4E-06 47.9 24.9 216 235-459 140-453 (638)
352 3a7p_A Autophagy protein 16; c 97.1 0.0073 2.5E-07 46.0 10.5 21 14-35 30-50 (152)
353 1xi4_A Clathrin heavy chain; a 96.9 0.046 1.6E-06 58.6 18.4 233 232-474 72-334 (1630)
354 3na7_A HP0958; flagellar bioge 96.9 0.18 6.3E-06 43.8 22.4 51 96-146 95-145 (256)
355 3s25_A Hypothetical 7-bladed b 96.9 0.24 8.1E-06 44.4 24.7 176 230-425 57-255 (302)
356 2dfs_A Myosin-5A; myosin-V, in 96.8 0.11 3.8E-06 55.1 20.8 36 96-131 982-1017(1080)
357 3u1c_A Tropomyosin alpha-1 cha 96.8 0.08 2.7E-06 38.2 14.4 27 46-72 6-32 (101)
358 3na7_A HP0958; flagellar bioge 96.8 0.22 7.6E-06 43.3 20.2 16 239-254 221-236 (256)
359 3o0z_A RHO-associated protein 96.7 0.14 4.8E-06 40.0 19.0 12 50-61 7-18 (168)
360 3mq7_A Bone marrow stromal ant 96.6 0.1 3.6E-06 37.2 14.1 24 51-74 27-50 (121)
361 2jee_A YIIU; FTSZ, septum, coi 96.6 0.088 3E-06 35.4 11.7 61 82-142 11-71 (81)
362 3b7f_A Glycosyl hydrolase, BNR 96.5 0.52 1.8E-05 44.1 27.6 179 238-421 23-258 (394)
363 3qhy_B Beta-lactamase inhibito 96.5 0.41 1.4E-05 42.4 20.3 218 268-509 24-242 (282)
364 2dfs_A Myosin-5A; myosin-V, in 96.5 0.12 4.1E-06 54.8 18.3 31 91-121 984-1014(1080)
365 3u59_A Tropomyosin beta chain; 96.5 0.14 4.8E-06 37.0 14.2 30 46-75 6-35 (101)
366 3vkg_A Dynein heavy chain, cyt 96.5 0.1 3.4E-06 61.2 18.8 24 17-40 1885-1908(3245)
367 3hnw_A Uncharacterized protein 96.3 0.089 3.1E-06 40.3 11.7 54 86-139 77-130 (138)
368 3hnw_A Uncharacterized protein 96.2 0.22 7.6E-06 38.1 13.8 58 90-147 74-131 (138)
369 3u1c_A Tropomyosin alpha-1 cha 96.1 0.23 8E-06 35.7 15.0 48 96-143 28-75 (101)
370 2wg3_C Hedgehog-interacting pr 95.9 1.3 4.4E-05 42.3 28.8 232 226-459 14-354 (463)
371 3qhy_B Beta-lactamase inhibito 95.9 0.89 3E-05 40.2 23.5 239 227-493 25-264 (282)
372 2v66_B Nuclear distribution pr 95.8 0.33 1.1E-05 35.1 15.8 69 86-154 30-98 (111)
373 1ic2_A Tropomyosin alpha chain 95.7 0.26 9E-06 33.8 11.1 34 109-142 38-71 (81)
374 1i84_S Smooth muscle myosin he 95.7 0.055 1.9E-06 58.5 11.5 27 47-73 862-888 (1184)
375 3o0z_A RHO-associated protein 95.7 0.55 1.9E-05 36.8 20.8 12 89-100 67-78 (168)
376 4gkw_A Spindle assembly abnorm 95.7 0.39 1.3E-05 35.0 15.7 21 48-68 59-79 (167)
377 4h22_A Leucine-rich repeat fli 95.6 0.29 9.9E-06 34.5 10.8 61 82-142 21-81 (103)
378 3q8t_A Beclin-1; autophagy, AT 95.6 0.38 1.3E-05 34.1 14.9 88 51-145 6-93 (96)
379 1deq_A Fibrinogen (alpha chain 95.6 0.67 2.3E-05 41.3 15.5 94 46-142 64-157 (390)
380 3vkg_A Dynein heavy chain, cyt 95.4 1 3.5E-05 53.1 20.7 27 46-72 1938-1964(3245)
381 4hvt_A Ritya.17583.B, post-pro 95.4 2.7 9.2E-05 42.6 24.1 237 228-470 131-429 (711)
382 3q6k_A 43.2 kDa salivary prote 95.4 1.6 5.6E-05 40.1 20.8 166 333-500 124-341 (381)
383 2ocy_A RAB guanine nucleotide 95.4 0.69 2.4E-05 35.8 15.1 78 49-126 58-136 (154)
384 1i84_S Smooth muscle myosin he 95.3 0.06 2E-06 58.2 10.1 37 47-83 855-891 (1184)
385 3kci_A Probable E3 ubiquitin-p 95.3 1.8 6.3E-05 40.3 27.9 222 278-509 61-341 (389)
386 3a7o_A Autophagy protein 16; c 95.3 0.3 1E-05 31.2 9.1 55 92-146 19-73 (75)
387 1wt6_A Myotonin-protein kinase 95.2 0.31 1E-05 32.5 9.3 40 64-103 25-64 (81)
388 3ghg_A Fibrinogen alpha chain; 95.1 0.33 1.1E-05 45.2 12.5 38 102-139 114-151 (562)
389 1x79_B RAB GTPase binding effe 95.0 0.66 2.3E-05 33.6 11.5 10 143-152 94-103 (112)
390 3u59_A Tropomyosin beta chain; 95.0 0.66 2.3E-05 33.4 14.5 50 96-145 28-77 (101)
391 3tnu_A Keratin, type I cytoske 94.9 0.89 3E-05 34.6 13.7 37 91-127 84-120 (131)
392 2b5u_A Colicin E3; high resolu 94.8 1.8 6E-05 40.1 16.3 23 49-71 321-343 (551)
393 2wg3_C Hedgehog-interacting pr 94.5 3.5 0.00012 39.3 25.5 104 268-371 14-158 (463)
394 3ghg_A Fibrinogen alpha chain; 94.2 1.2 4E-05 41.6 13.8 39 109-147 114-152 (562)
395 2v4h_A NF-kappa-B essential mo 94.1 1.1 3.7E-05 32.0 13.4 9 51-59 26-34 (110)
396 2jee_A YIIU; FTSZ, septum, coi 94.1 0.86 2.9E-05 30.7 12.6 12 119-130 34-45 (81)
397 3no0_A DNA gyrase subunit A; D 93.9 3 0.0001 36.6 24.5 198 267-471 23-246 (276)
398 3no0_A DNA gyrase subunit A; D 93.9 3.1 0.0001 36.5 22.4 193 226-424 24-245 (276)
399 1wp5_A Topoisomerase IV; broke 93.8 3.6 0.00012 37.0 26.7 190 235-425 3-225 (323)
400 1ic2_A Tropomyosin alpha chain 93.8 1.1 3.7E-05 30.7 11.7 26 47-72 4-29 (81)
401 1suu_A DNA gyrase subunit A; t 93.6 3.9 0.00013 36.7 27.7 189 235-425 6-231 (312)
402 1wt6_A Myotonin-protein kinase 93.6 1 3.5E-05 30.0 10.2 42 96-137 29-70 (81)
403 3uc1_A DNA gyrase subunit A; D 93.5 4.1 0.00014 36.7 27.8 262 238-504 4-321 (327)
404 3nmd_A CGMP dependent protein 93.4 0.6 2.1E-05 30.5 7.6 19 111-129 46-64 (72)
405 3s4r_A Vimentin; alpha-helix, 93.3 1.5 5E-05 30.9 12.3 38 103-140 54-91 (93)
406 3ni0_A Bone marrow stromal ant 93.1 1.4 4.8E-05 30.2 11.3 9 54-62 23-31 (99)
407 3i00_A HIP-I, huntingtin-inter 93.0 2 7E-05 31.8 11.2 54 86-139 28-81 (120)
408 4hvt_A Ritya.17583.B, post-pro 93.0 8.7 0.0003 38.9 19.6 219 271-498 132-411 (711)
409 1wle_A Seryl-tRNA synthetase; 93.0 2.4 8.4E-05 40.5 14.5 29 12-40 6-34 (501)
410 2efr_A General control protein 92.9 2.6 9E-05 32.7 20.8 42 96-137 75-116 (155)
411 3tnu_A Keratin, type I cytoske 92.2 2.9 0.0001 31.7 12.6 27 81-107 42-68 (131)
412 1m1j_A Fibrinogen alpha subuni 92.2 6.4 0.00022 36.1 15.1 39 101-139 114-152 (491)
413 3uc1_A DNA gyrase subunit A; D 91.9 6.9 0.00024 35.2 26.2 197 227-425 43-279 (327)
414 2eqb_B RAB guanine nucleotide 91.9 2.3 8E-05 29.7 13.7 11 93-103 49-59 (97)
415 3l6v_A GYRA, DNA gyrase subuni 91.8 7.7 0.00026 35.6 26.1 190 234-425 4-265 (370)
416 3m91_A Proteasome-associated A 91.8 1.3 4.6E-05 26.9 7.2 36 95-130 13-48 (51)
417 3tnu_B Keratin, type II cytosk 91.8 3.3 0.00011 31.3 12.8 15 131-145 80-94 (129)
418 3cvf_A Homer-3, homer protein 91.5 2.2 7.4E-05 28.7 10.7 26 82-107 25-50 (79)
419 2e7s_A RAB guanine nucleotide 91.4 0.29 1E-05 36.7 4.9 32 86-117 84-115 (135)
420 3mq9_A Bone marrow stromal ant 91.4 4.1 0.00014 39.0 14.5 79 52-130 355-436 (471)
421 1zi0_A DNA gyrase subunit A; b 91.3 7.6 0.00026 34.6 27.5 188 235-424 1-225 (307)
422 2ocy_A RAB guanine nucleotide 91.2 4.2 0.00014 31.4 18.9 42 101-142 54-95 (154)
423 3mq9_A Bone marrow stromal ant 90.7 7.3 0.00025 37.3 15.5 12 48-59 372-383 (471)
424 2xv5_A Lamin-A/C; structural p 90.7 2.5 8.7E-05 28.1 8.4 50 84-133 5-54 (74)
425 3ol1_A Vimentin; structural ge 90.6 4.1 0.00014 30.2 14.7 37 46-82 17-53 (119)
426 1x8y_A Lamin A/C; structural p 90.5 3.1 0.00011 28.7 11.1 52 84-135 28-79 (86)
427 2b9c_A Striated-muscle alpha t 90.4 5 0.00017 31.0 13.6 65 88-152 49-113 (147)
428 4d9s_A UVB-resistance protein 90.4 11 0.00039 35.1 32.3 265 227-509 17-353 (406)
429 2efr_A General control protein 90.4 5.2 0.00018 31.1 21.7 52 96-147 68-119 (155)
430 1t6f_A Geminin; coiled-coil, c 90.2 1.2 4.3E-05 24.0 5.2 23 80-102 10-32 (37)
431 1suu_A DNA gyrase subunit A; t 89.9 10 0.00035 33.8 27.0 188 277-471 6-231 (312)
432 3q8t_A Beclin-1; autophagy, AT 89.6 4.1 0.00014 28.8 14.7 6 97-102 38-43 (96)
433 2k48_A Nucleoprotein; viral pr 89.5 3.2 0.00011 29.1 8.3 16 46-61 32-47 (107)
434 4h22_A Leucine-rich repeat fli 89.2 4.4 0.00015 28.6 10.0 43 95-137 41-83 (103)
435 1deq_A Fibrinogen (alpha chain 89.0 12 0.00042 33.4 14.0 100 46-148 53-156 (390)
436 3mq7_A Bone marrow stromal ant 88.9 5 0.00017 28.8 15.8 26 124-149 76-101 (121)
437 2oxj_A Hybrid alpha/beta pepti 88.8 1.2 4.1E-05 23.8 4.4 27 107-133 3-29 (34)
438 1go4_E MAD1 (mitotic arrest de 88.8 3.9 0.00013 28.9 8.4 24 91-114 19-42 (100)
439 2e7s_A RAB guanine nucleotide 88.3 6 0.0002 29.7 9.7 37 106-142 47-83 (135)
440 1sqj_A OXG-RCBH, oligoxylogluc 88.0 26 0.0009 36.0 25.9 150 225-376 14-195 (789)
441 1gk4_A Vimentin; intermediate 88.0 4.9 0.00017 27.6 12.3 48 86-133 28-75 (84)
442 1zvu_A Topoisomerase IV subuni 87.5 24 0.00083 35.1 22.1 73 309-382 553-633 (716)
443 4gq2_M Nucleoporin NUP120; bet 87.5 9.6 0.00033 40.2 14.7 38 269-306 237-274 (950)
444 3q6k_A 43.2 kDa salivary prote 87.5 17 0.00059 33.4 23.6 187 226-412 87-341 (381)
445 4emc_A Monopolin complex subun 87.3 6.8 0.00023 31.2 9.9 18 90-107 19-36 (190)
446 3s9g_A Protein hexim1; cyclin 86.9 5.9 0.0002 27.4 9.5 22 132-153 64-85 (104)
447 2k48_A Nucleoprotein; viral pr 86.8 6.3 0.00022 27.7 11.2 27 95-121 39-65 (107)
448 1sqj_A OXG-RCBH, oligoxylogluc 86.7 31 0.0011 35.5 25.6 147 267-415 14-190 (789)
449 4gq2_M Nucleoporin NUP120; bet 86.7 27 0.00093 36.8 17.5 37 354-390 238-274 (950)
450 2avr_X Adhesion A; antiparalle 86.7 7.5 0.00026 28.4 14.0 18 45-62 5-22 (119)
451 4emc_A Monopolin complex subun 86.6 7.7 0.00026 30.9 9.9 18 96-113 32-49 (190)
452 2v4h_A NF-kappa-B essential mo 86.4 7.2 0.00025 27.9 13.4 14 89-102 43-56 (110)
453 3i00_A HIP-I, huntingtin-inter 86.3 8.3 0.00029 28.5 11.1 16 116-131 65-80 (120)
454 2w83_C C-JUN-amino-terminal ki 85.9 5.6 0.00019 26.1 9.4 34 111-144 36-69 (77)
455 1kd8_A GABH AIV, GCN4 acid bas 85.9 2 7E-05 23.2 4.3 28 108-135 4-31 (36)
456 1wp5_A Topoisomerase IV; broke 85.8 19 0.00066 32.2 26.1 190 277-471 3-225 (323)
457 3c3f_A Alpha/beta peptide with 85.7 2.3 7.9E-05 22.6 4.4 26 108-133 4-29 (34)
458 2wt7_B Transcription factor MA 85.7 7 0.00024 27.0 10.6 36 101-136 51-86 (90)
459 3he5_B Synzip2; heterodimeric 85.5 3.4 0.00011 23.2 6.9 35 98-132 10-44 (52)
460 3qh9_A Liprin-beta-2; coiled-c 85.2 6.4 0.00022 26.2 10.8 37 91-127 26-62 (81)
461 3ljm_A Coil Ser L9C; de novo d 85.1 2.2 7.4E-05 21.3 3.9 24 100-123 3-26 (31)
462 2xnx_M M protein, M1-BC1; cell 85.1 4.7 0.00016 30.4 7.6 33 113-145 74-106 (146)
463 1kd8_B GABH BLL, GCN4 acid bas 84.8 3.3 0.00011 22.5 5.1 27 108-134 4-30 (36)
464 4dnd_A Syntaxin-10, SYN10; str 84.7 11 0.00037 28.4 10.1 20 39-58 28-47 (130)
465 3qh9_A Liprin-beta-2; coiled-c 84.5 7 0.00024 26.1 10.0 37 83-119 32-68 (81)
466 1zi0_A DNA gyrase subunit A; b 84.5 21 0.00074 31.7 26.7 223 277-506 1-270 (307)
467 3c3g_A Alpha/beta peptide with 84.3 3 0.0001 22.1 4.4 26 108-133 3-28 (33)
468 2p22_A Suppressor protein STP2 84.1 9.7 0.00033 30.2 9.5 16 48-63 11-26 (174)
469 4dzn_A Coiled-coil peptide CC- 83.8 2.9 0.0001 21.1 4.8 28 92-119 3-30 (33)
470 1gk6_A Vimentin; intermediate 83.7 6.2 0.00021 24.9 7.3 45 89-133 5-49 (59)
471 2xzr_A Immunoglobulin-binding 83.7 8.4 0.00029 26.4 14.7 91 46-136 17-107 (114)
472 2xdj_A Uncharacterized protein 83.4 8.6 0.00029 26.2 9.2 69 45-113 2-70 (83)
473 3lay_A Zinc resistance-associa 83.4 5.6 0.00019 31.8 8.1 73 48-120 70-142 (175)
474 3ghg_B Fibrinogen beta chain; 82.8 12 0.00043 34.7 11.0 100 43-142 89-193 (461)
475 4e61_A Protein BIM1; EB1-like 82.5 11 0.00038 26.9 9.5 55 93-147 6-60 (106)
476 3l6v_A GYRA, DNA gyrase subuni 82.3 30 0.001 31.7 27.9 229 277-507 5-310 (370)
477 2oqq_A Transcription factor HY 82.2 5.1 0.00017 22.7 5.9 34 93-126 5-38 (42)
478 3kci_A Probable E3 ubiquitin-p 82.1 31 0.0011 31.8 28.4 275 231-508 56-384 (389)
479 3efg_A Protein SLYX homolog; x 81.7 7.5 0.00026 26.2 7.0 54 95-148 11-64 (78)
480 2ic6_A Nucleocapsid protein; h 81.7 9.3 0.00032 25.4 8.1 64 57-120 6-74 (78)
481 2bni_A General control protein 81.7 3.1 0.00011 22.3 3.9 29 105-133 1-29 (34)
482 4a9v_A PHOX; hydrolase, beta-p 81.6 6.9 0.00024 38.0 9.4 61 352-412 476-548 (592)
483 2yy0_A C-MYC-binding protein; 81.4 4.7 0.00016 24.8 5.3 31 98-128 19-49 (53)
484 3m91_A Proteasome-associated A 81.4 6.9 0.00024 23.7 7.2 42 104-145 8-49 (51)
485 3m48_A General control protein 81.3 4.2 0.00015 21.6 4.3 25 109-133 4-28 (33)
486 2i1j_A Moesin; FERM, coiled-co 81.3 2.2 7.6E-05 41.8 6.1 126 46-171 332-457 (575)
487 2xdj_A Uncharacterized protein 80.9 11 0.00037 25.7 10.4 62 68-129 4-65 (83)
488 3lay_A Zinc resistance-associa 80.9 20 0.00067 28.6 10.3 61 76-136 70-137 (175)
489 3iox_A AGI/II, PA; alpha helix 80.8 37 0.0013 31.8 15.7 101 47-147 7-108 (497)
490 3bas_A Myosin heavy chain, str 80.8 12 0.0004 26.0 12.3 78 66-143 10-87 (89)
491 4fi5_A Nucleoprotein; structur 80.7 8.9 0.0003 27.4 7.2 72 58-129 24-100 (113)
492 3iv1_A Tumor susceptibility ge 80.7 10 0.00035 25.3 11.0 64 83-146 10-73 (78)
493 1ci6_A Transcription factor AT 80.5 9 0.00031 24.5 7.9 46 81-126 13-58 (63)
494 2no2_A HIP-I, huntingtin-inter 80.4 14 0.00048 26.7 15.9 96 57-152 2-101 (107)
495 4dzn_A Coiled-coil peptide CC- 80.1 4.3 0.00015 20.5 5.2 30 106-135 3-32 (33)
496 4fla_A Regulation of nuclear P 79.9 19 0.00066 27.9 11.9 80 59-138 68-147 (152)
497 1go4_E MAD1 (mitotic arrest de 79.7 14 0.00047 26.1 8.4 66 75-140 10-96 (100)
498 3uux_B Mitochondrial division 79.6 26 0.00088 29.2 11.3 76 65-140 151-226 (242)
499 2zuo_A MVP, major vault protei 79.5 56 0.0019 33.0 22.3 152 48-200 669-821 (861)
500 2w6a_A ARF GTPase-activating p 79.2 8.8 0.0003 23.6 8.5 49 98-146 13-61 (63)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.8e-51 Score=396.46 Aligned_cols=288 Identities=25% Similarity=0.442 Sum_probs=272.7
Q ss_pred ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470 217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV 296 (510)
Q Consensus 217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 296 (510)
....+.+|.++|++++|+|++.+|++|+.||+|+|||+.+++....+.+|.+.|.+++|+|++++|++|+.|+.|++||+
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 179 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcCCCCEEEEecCCCcE
Q 010470 297 NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNL 375 (510)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i 375 (510)
.+++++..+.+|...|.+++|+| ++.+|++|+.|++|++||+.++.++..+..+. .+.++.++|+|.+|++|+.||.|
T Consensus 180 ~~~~~~~~~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v 258 (410)
T 1vyh_C 180 QGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258 (410)
T ss_dssp TSSCEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCceeEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeE
Confidence 99999999999999999999999 88999999999999999999999999888765 49999999999999999999999
Q ss_pred EEEECCCCceeeeecccccccEEEEEEcCC--------------------CCEEEEEecCCcEEEEEcCCceeeeEeecC
Q 010470 376 RLWDIQTGKLLSEVAAHSLAAVTSISLSRS--------------------GNIILTSGRDNLHNLFDIRSLEVCGSLRAT 435 (510)
Q Consensus 376 ~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~--------------------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 435 (510)
++||++++.....+..|. ..|.+++|+|+ |.+|++|+.|+.|++||++++..+..+.+|
T Consensus 259 ~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h 337 (410)
T 1vyh_C 259 RVWVVATKECKAELREHR-HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 337 (410)
T ss_dssp EEEETTTCCEEEEECCCS-SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred EEEECCCCceeeEecCCC-ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECC
Confidence 999999999988888877 89999999996 678999999999999999999999999888
Q ss_pred CCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 436 GNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 436 ~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
...+.. ++|+|+|.+|++|+.||.|++||+.+++++..+.+|...|++++|+|++.+|++|+.||.|++|+
T Consensus 338 ~~~v~~----v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 338 DNWVRG----VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp SSCEEE----EEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCcEEE----EEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 766554 89999999999999999999999999999999999999999999999999999999999999997
No 2
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=9.1e-49 Score=369.41 Aligned_cols=293 Identities=20% Similarity=0.328 Sum_probs=268.4
Q ss_pred CCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEE
Q 010470 213 VPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLY 292 (510)
Q Consensus 213 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 292 (510)
.+.....++.+|.++|++++|+|++++|++|+.||.|++||+.++..+..+..|...|.+++|+|+++++++++.|+.|+
T Consensus 43 ~~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~ 122 (340)
T 1got_B 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122 (340)
T ss_dssp CCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred ccchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEE
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCC----eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEE
Q 010470 293 VWDVNSGR----VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIF 367 (510)
Q Consensus 293 iwd~~~~~----~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~ 367 (510)
+|++.++. ....+.+|.+.|.++.|++ + ..+++++.|+.|++||+.++.++..+..+ ..+.+++|+|++.+++
T Consensus 123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~-~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 200 (340)
T 1got_B 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLD-D-NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200 (340)
T ss_dssp EEETTTCSBSCEEEEEEECCSSCEEEEEEEE-T-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEECccCCCcceeEEEecCCCccEEEEEECC-C-CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEE
Confidence 99998753 5567889999999999988 3 45899999999999999999999888766 4699999999999999
Q ss_pred EecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEE
Q 010470 368 SGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSC 447 (510)
Q Consensus 368 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (510)
+|+.||.|++||++++.....+..|. ..|.+++|+|++++|++++.||.|++||++++.....+.... ....+.+++
T Consensus 201 sg~~d~~v~~wd~~~~~~~~~~~~h~-~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~--~~~~v~~~~ 277 (340)
T 1got_B 201 SGACDASAKLWDVREGMCRQTFTGHE-SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN--IICGITSVS 277 (340)
T ss_dssp EEETTSCEEEEETTTCSEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT--CCSCEEEEE
T ss_pred EEeCCCcEEEEECCCCeeEEEEcCCc-CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCC--cccceEEEE
Confidence 99999999999999999999988877 899999999999999999999999999999988776665332 223456699
Q ss_pred EcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 448 ISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 448 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
|+|+|++|++|+.||.|++||+.+++.+..+.+|.++|.+++|+|+|.+|++|+.||.|++||
T Consensus 278 ~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999999999999999999999999999999999999999999999999999999999997
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.9e-49 Score=365.72 Aligned_cols=288 Identities=21% Similarity=0.405 Sum_probs=265.6
Q ss_pred ceeeccccccceEEEEEecC----CCEEEEeeCCCeEEEEeCCCCcc--eecccccccceeEEEEecCCCEEEEEeCCCe
Q 010470 217 CKHKINAHEGGCASILFEYN----SARLISGGQDKSIKLWDTNTGSL--SSTLYGCLGSVLDLAITHDNRSVIAASSSNN 290 (510)
Q Consensus 217 ~~~~~~~h~~~v~~~~~s~~----~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 290 (510)
....+.+|.++|++++|+|+ +.+|++|+.|++|+||++.++.. ...+.+|...|.+++|+|++.++++++.|+.
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 45667899999999999975 67999999999999999987654 4567899999999999999999999999999
Q ss_pred EEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcCCCCEEEEe
Q 010470 291 LYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSG 369 (510)
Q Consensus 291 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~ 369 (510)
|++||+.+++.+..+..|...+.+++|+| ++.+|++++.||.|++||+.++.....+..+. .+.+++|+|+|++|++|
T Consensus 104 i~lWd~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 104 IRLWDLENGKQIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEEETTTTEEEEEEECCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 99999999999999999999999999999 89999999999999999999998888776654 59999999999999999
Q ss_pred cCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEc
Q 010470 370 HIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCIS 449 (510)
Q Consensus 370 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s 449 (510)
+.||.|++||+++++.+..+..+. .+|.+++|+|++.+|++++.|+.|++||++++.....+.++...+.. ++|+
T Consensus 183 ~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~----~~~s 257 (321)
T 3ow8_A 183 AIDGIINIFDIATGKLLHTLEGHA-MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLN----VAFC 257 (321)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCS-SCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEE----EEEC
T ss_pred cCCCeEEEEECCCCcEEEEEcccC-CceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEE----EEEC
Confidence 999999999999999999988876 89999999999999999999999999999999988888877766554 9999
Q ss_pred CCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 450 PDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 450 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
|++.+|++|+.||+|++||+.+++++..+.+|...|.+++|+|++.+|++++.||.|++||
T Consensus 258 p~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 258 PDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred CCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999997
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.3e-48 Score=365.86 Aligned_cols=293 Identities=19% Similarity=0.297 Sum_probs=266.3
Q ss_pred CccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEE
Q 010470 214 PSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYV 293 (510)
Q Consensus 214 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 293 (510)
+.....++.+|.+.|++++|+|++.+|++|+.||+|+|||..+++....+..|...|.+++|+|++.++++++.|+.+++
T Consensus 53 ~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v 132 (354)
T 2pbi_B 53 VMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 132 (354)
T ss_dssp CCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEE
T ss_pred ccEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEE
Confidence 34577889999999999999999999999999999999999999988888899999999999999999999999999999
Q ss_pred EEcCCC------CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcC--CCC
Q 010470 294 WDVNSG------RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSM--DGQ 364 (510)
Q Consensus 294 wd~~~~------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~--~~~ 364 (510)
|++... .....+.+|...|.++.|+| ++..|++++.||+|++||+.+++++..+..+. .+.+++|+| +|+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~ 211 (354)
T 2pbi_B 133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN 211 (354)
T ss_dssp EECCCCTTCCSGGGCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC
T ss_pred EEEeccccccccccceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC
Confidence 998653 24566778999999999999 78899999999999999999999999888764 588999987 578
Q ss_pred EEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCce
Q 010470 365 TIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWS 444 (510)
Q Consensus 365 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 444 (510)
+|++|+.||.|++||+++++.+..+..|. ..|.+++|+|++.+|++++.|+.|++||+++......+..+.. ...+.
T Consensus 212 ~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~-~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~--~~~~~ 288 (354)
T 2pbi_B 212 TFVSGGCDKKAMVWDMRSGQCVQAFETHE-SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESI--IFGAS 288 (354)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTC--CSCEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCC-CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCc--cccee
Confidence 99999999999999999999999888877 8999999999999999999999999999998877666654322 22345
Q ss_pred eEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 445 RSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 445 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
.++|+|+|.+|++|+.||.|++||+.+++.+..+.+|.+.|++++|+|+|++|++|+.||.|++|+
T Consensus 289 ~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 289 SVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 689999999999999999999999999999999999999999999999999999999999999997
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.2e-47 Score=355.74 Aligned_cols=287 Identities=18% Similarity=0.255 Sum_probs=261.0
Q ss_pred cceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEE
Q 010470 216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD 295 (510)
Q Consensus 216 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 295 (510)
....+|.+|.+.|++++|+|+|++|++|+.||.|++||+.++..+..+..|..+|.+++|+|++++|++|+.|+.|++||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC-eEeeeeeec-CceeEEEEcC-CCCEEEEecCC
Q 010470 296 VNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG-YCVNTIIFH-SNCNALAFSM-DGQTIFSGHID 372 (510)
Q Consensus 296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~-~~i~~i~~~~-~~~~l~~~~~d 372 (510)
+.+++.+..+.+|...|.+++|+| ++.+|++|+.||+|++||++++ .....+..+ ..|.+++|+| ++..|++|+.|
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D 162 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC
Confidence 999999999999999999999999 8899999999999999999877 444555555 4599999999 67899999999
Q ss_pred CcEEEEECCCCceeeeecccccccEEEEEEcC--CCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcC
Q 010470 373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSR--SGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP 450 (510)
Q Consensus 373 g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 450 (510)
|.|++||++++.....+..++...+..+.|+| ++.+|++++.|+.|++||+++++.+..+.+|...+.. ++|+|
T Consensus 163 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~----~~~~p 238 (304)
T 2ynn_A 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF----AVFHP 238 (304)
T ss_dssp SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE----EEECS
T ss_pred CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEE----EEECC
Confidence 99999999988877777666557899999987 6789999999999999999999999999888776654 89999
Q ss_pred CCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCC--cEEEeeCCCeEE
Q 010470 451 DESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGK--PLASADKNGVVC 507 (510)
Q Consensus 451 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg~i~ 507 (510)
++.+|++|+.||+|++||+.+++.+..+..|...+.+++|+|++. ++++|+.||.+.
T Consensus 239 ~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~ 297 (304)
T 2ynn_A 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297 (304)
T ss_dssp SSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEE
Confidence 999999999999999999999999999999999999999999886 577777776543
No 6
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.4e-48 Score=372.25 Aligned_cols=296 Identities=20% Similarity=0.342 Sum_probs=263.6
Q ss_pred CccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEE
Q 010470 214 PSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYV 293 (510)
Q Consensus 214 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 293 (510)
...+..++.+|.+.|++++|+|+|++|++|+.||+|+|||+.++.....+..|...|.+++|+|++++|++|+.|+.+++
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 35578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCC-------eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee-----ec-CceeEEEEc
Q 010470 294 WDVNSGR-------VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII-----FH-SNCNALAFS 360 (510)
Q Consensus 294 wd~~~~~-------~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~-~~i~~i~~~ 360 (510)
|++.+.. ....+.+|.+.|.++.|+|.++..|++|+.|++|++||+.++..+..+. .+ ..+.+++|+
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 214 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence 9987532 3456789999999999999667789999999999999999999887763 22 458999998
Q ss_pred C-CCCEEEEecCCCcEEEEECC-CCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCe
Q 010470 361 M-DGQTIFSGHIDGNLRLWDIQ-TGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNR 438 (510)
Q Consensus 361 ~-~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 438 (510)
| ++.+|++|+.||.|++||++ .+..+..+..|. ..|.+++|+|++.+|++++.|+.|++||++++..+..+..+...
T Consensus 215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~-~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~ 293 (380)
T 3iz6_a 215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHE-GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDR 293 (380)
T ss_dssp SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCS-SCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSS
T ss_pred cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcC-CCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccc
Confidence 7 88999999999999999998 456777777776 89999999999999999999999999999999888877654332
Q ss_pred ---eecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecc----cccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 439 ---VASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTL----KEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 439 ---~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
....+.+++|+|+|++|++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|+|.+|++|+.||.|++|+
T Consensus 294 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~ 372 (380)
T 3iz6_a 294 NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWA 372 (380)
T ss_dssp SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred cccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence 1123567999999999999999999999999988877666 67999999999999999999999999999996
No 7
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.8e-46 Score=349.81 Aligned_cols=294 Identities=28% Similarity=0.495 Sum_probs=269.1
Q ss_pred ccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEE
Q 010470 215 STCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVW 294 (510)
Q Consensus 215 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 294 (510)
.....++.+|.++|++++|+|+|++|++|+.||.|++|++.+++....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCC
Q 010470 295 DVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDG 373 (510)
Q Consensus 295 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg 373 (510)
|+.+++.+..+.+|...|.++.|+| ++.++++|+.||.|++||+++++++..+..+ ..+.+++|+|++.+|++|+.||
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 171 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 9999999999999999999999999 8899999999999999999999988888766 4699999999999999999999
Q ss_pred cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCC
Q 010470 374 NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES 453 (510)
Q Consensus 374 ~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 453 (510)
.|++||+++++.+..+......++.+++|+|++++|++++.|+.|++||+++++....+..+....... ......+++.
T Consensus 172 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 250 (312)
T 4ery_A 172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGK 250 (312)
T ss_dssp CEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCC-CEEEECSSSC
T ss_pred cEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEE-EEEEEeCCCc
Confidence 999999999998888766655789999999999999999999999999999999988887766543321 1123346889
Q ss_pred EEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEee--CCCeEEEcC
Q 010470 454 YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASAD--KNGVVCVWT 510 (510)
Q Consensus 454 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~dg~i~iwd 510 (510)
+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++ .||.|++|+
T Consensus 251 ~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 251 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309 (312)
T ss_dssp EEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred EEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence 999999999999999999999999999999999999999999999987 699999995
No 8
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.1e-45 Score=344.86 Aligned_cols=287 Identities=23% Similarity=0.439 Sum_probs=253.4
Q ss_pred ccceeeccccccceEEEEEecCC-CEEEEeeCCCeEEEEeCCC-----CcceecccccccceeEEEEecCCCEEEEEeCC
Q 010470 215 STCKHKINAHEGGCASILFEYNS-ARLISGGQDKSIKLWDTNT-----GSLSSTLYGCLGSVLDLAITHDNRSVIAASSS 288 (510)
Q Consensus 215 ~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 288 (510)
.....++.+|.++|++++|+|++ ++|++|+.|++|++|++.. +.++..+.+|...|.+++|+|++++|++++.|
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD 86 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence 34667899999999999999965 8999999999999999864 33466788999999999999999999999999
Q ss_pred CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCC-----
Q 010470 289 NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMD----- 362 (510)
Q Consensus 289 ~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~----- 362 (510)
++|++||+.+++.+..+.+|...|.+++|+| ++.++++|+.|++|++||++. .++..+..+ ..+.++.+.|.
T Consensus 87 ~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~ 164 (319)
T 3frx_A 87 KTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADD 164 (319)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC-----
T ss_pred CEEEEEECCCCCeeEEEccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCC
Confidence 9999999999999999999999999999999 889999999999999999974 455555554 55899999985
Q ss_pred -CCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeec
Q 010470 363 -GQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVAS 441 (510)
Q Consensus 363 -~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 441 (510)
+..+++++.||.|++||+++++....+..|. ..|.+++|+|+|.+|++++.||.|++||+.+++.+..+..+.
T Consensus 165 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~-~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----- 238 (319)
T 3frx_A 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHN-SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD----- 238 (319)
T ss_dssp -CCEEEEEETTSCEEEEETTTTEEEEEECCCC-SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCS-----
T ss_pred CccEEEEEeCCCEEEEEECCcchhheeecCCC-CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC-----
Confidence 4589999999999999999999888888877 899999999999999999999999999999999888887543
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeeccc--------ccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 442 NWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLK--------EHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 442 ~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
.+..++|+|++.+|++++.++ +++|++..+..+..+. .|...+.+++|+|+|++|++|+.||.|++||
T Consensus 239 ~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp CEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 344599999999999988655 9999998876655443 3567899999999999999999999999996
No 9
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.5e-45 Score=352.96 Aligned_cols=281 Identities=22% Similarity=0.433 Sum_probs=249.5
Q ss_pred ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccccc------------------ceeEEEEecCCCEEEE
Q 010470 223 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLG------------------SVLDLAITHDNRSVIA 284 (510)
Q Consensus 223 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~l~~ 284 (510)
+|.+.|.+++|+|+|++|++|+ ++.+++|++.++..+..+..|.. .|.+++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999987 68999999999988777655432 4899999999999999
Q ss_pred EeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcC-CC
Q 010470 285 ASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSM-DG 363 (510)
Q Consensus 285 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~-~~ 363 (510)
|+.|+.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.|++|++||++++.+...+..+..+.+++|+| ++
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 219 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG 219 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTC
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCC
Confidence 99999999999999999999999999999999999 88999999999999999999999998888888899999999 89
Q ss_pred CEEEEecCCCcEEEEECCCCceeeeec-------ccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCce---------
Q 010470 364 QTIFSGHIDGNLRLWDIQTGKLLSEVA-------AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLE--------- 427 (510)
Q Consensus 364 ~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~--------- 427 (510)
.+|++|+.||.|++||++++..+..+. .|. ..|.+++|+|+|.+|++++.|+.|++||+++..
T Consensus 220 ~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~-~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~ 298 (393)
T 1erj_A 220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK-DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298 (393)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEEC------CCCS-SCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCC-CCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC
Confidence 999999999999999999998877662 343 789999999999999999999999999997643
Q ss_pred ---eeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeC------CCCcEE
Q 010470 428 ---VCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG------LGKPLA 498 (510)
Q Consensus 428 ---~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~ 498 (510)
....+.+|...+ .+++|+|++.+|++|+.||.|++||+.+++++..+.+|.+.|.+++|++ ++++|+
T Consensus 299 ~~~~~~~~~~h~~~v----~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~ 374 (393)
T 1erj_A 299 SGTCEVTYIGHKDFV----LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA 374 (393)
T ss_dssp --CEEEEEECCSSCE----EEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEE
T ss_pred CCcceEEEecccCcE----EEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEE
Confidence 233444454443 4589999999999999999999999999999999999999999999986 678999
Q ss_pred EeeCCCeEEEcC
Q 010470 499 SADKNGVVCVWT 510 (510)
Q Consensus 499 s~~~dg~i~iwd 510 (510)
+|+.||.|++|+
T Consensus 375 sgs~Dg~i~iW~ 386 (393)
T 1erj_A 375 TGSGDCKARIWK 386 (393)
T ss_dssp EEETTSEEEEEE
T ss_pred EECCCCcEEECc
Confidence 999999999996
No 10
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.3e-45 Score=375.26 Aligned_cols=307 Identities=21% Similarity=0.356 Sum_probs=258.5
Q ss_pred HhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc---
Q 010470 188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY--- 264 (510)
Q Consensus 188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--- 264 (510)
.+++++.|+.+++|+.. +.++..++.+|.+.|.+++|+|+|++|++|+.|++|++||+.+++....+.
T Consensus 162 ~l~s~s~D~~v~lwd~~---------~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~ 232 (611)
T 1nr0_A 162 RIISGSDDNTVAIFEGP---------PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS 232 (611)
T ss_dssp EEEEEETTSCEEEEETT---------TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTT
T ss_pred EEEEEeCCCeEEEEECC---------CCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccc
Confidence 37788899999999733 245677899999999999999999999999999999999999998877763
Q ss_pred ----ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeE-------------------------------------
Q 010470 265 ----GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH------------------------------------- 303 (510)
Q Consensus 265 ----~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~------------------------------------- 303 (510)
+|.+.|.+++|+|++++|++++.|++|++||+.+++...
T Consensus 233 ~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~ 312 (611)
T 1nr0_A 233 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 312 (611)
T ss_dssp SSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred ccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCC
Confidence 799999999999999999999999999999998776443
Q ss_pred ------eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee-----------------------------
Q 010470 304 ------TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI----------------------------- 348 (510)
Q Consensus 304 ------~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----------------------------- 348 (510)
.+.+|...|.+++|+| ++.+|++++.|+.|++||+.++.+...+
T Consensus 313 ~~~~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~ 391 (611)
T 1nr0_A 313 LGSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLK 391 (611)
T ss_dssp TTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEE
T ss_pred CCCcceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceE
Confidence 3457999999999999 8999999999999999999876543221
Q ss_pred ------------------------------------------------------eecCceeEEEEcCCCCEEEEecCCCc
Q 010470 349 ------------------------------------------------------IFHSNCNALAFSMDGQTIFSGHIDGN 374 (510)
Q Consensus 349 ------------------------------------------------------~~~~~i~~i~~~~~~~~l~~~~~dg~ 374 (510)
.....+.+++|+|+|++|++|+.||.
T Consensus 392 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~ 471 (611)
T 1nr0_A 392 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSK 471 (611)
T ss_dssp EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSE
T ss_pred EeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCe
Confidence 00123578999999999999999999
Q ss_pred EEEEECCCCceee-eecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC-ceeeeE--eecCCCeeecCceeEEEcC
Q 010470 375 LRLWDIQTGKLLS-EVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS-LEVCGS--LRATGNRVASNWSRSCISP 450 (510)
Q Consensus 375 i~i~d~~~~~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~--~~~~~~~~~~~~~~~~~s~ 450 (510)
|++||+.++.... ....|. ..|.+++|+|+|++|++++.|+.|++||+.+ ++.... +..|.. .+.+++|+|
T Consensus 472 v~lwd~~~~~~~~~~~~~h~-~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~----~V~~v~fsp 546 (611)
T 1nr0_A 472 VHVYKLSGASVSEVKTIVHP-AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA----KVACVSWSP 546 (611)
T ss_dssp EEEEEEETTEEEEEEEEECS-SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSS----CEEEEEECT
T ss_pred EEEEEccCCceeeeeccCCC-CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeeccc----ceeEEEECC
Confidence 9999997765321 123344 8899999999999999999999999999987 554432 122433 455699999
Q ss_pred CCCEEEEEcCCCeEEEEeCCCcc-ee-eccccc-CcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 451 DESYVAAGSADGSVYIWSISKAD-IV-RTLKEH-TAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 451 ~~~~l~~~~~dg~i~iwd~~~~~-~~-~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+|++|++|+.|++|++|++.++. .. ..+.+| ...|.+++|+|++. |++++.||+|++|+
T Consensus 547 dg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~ 608 (611)
T 1nr0_A 547 DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWN 608 (611)
T ss_dssp TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred CCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEe
Confidence 99999999999999999998865 33 567789 89999999999998 99999999999996
No 11
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.1e-45 Score=345.00 Aligned_cols=291 Identities=18% Similarity=0.288 Sum_probs=244.2
Q ss_pred ccceeecccccc-ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCccee---cccccccceeEEEEecCCCEEEEEeCCCe
Q 010470 215 STCKHKINAHEG-GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSS---TLYGCLGSVLDLAITHDNRSVIAASSSNN 290 (510)
Q Consensus 215 ~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 290 (510)
..+..++.+|.+ .|.+++|+|+|++|++|+.|++|+|||+.++.... ...+|...|.+++|+|++++|++++.|+.
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 356788999988 99999999999999999999999999998775432 23689999999999999999999999999
Q ss_pred EEEEEcCCCC--eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe---Eeeeeeec-CceeEEEEcCCCC
Q 010470 291 LYVWDVNSGR--VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY---CVNTIIFH-SNCNALAFSMDGQ 364 (510)
Q Consensus 291 i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~-~~i~~i~~~~~~~ 364 (510)
|++|++.++. ++..+.+|...|.+++|+| ++++|++|+.|+.|++||+.++. ++..+..+ ..+.+++|+|++.
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 163 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence 9999998764 5778899999999999999 89999999999999999998763 34444444 4599999999999
Q ss_pred EEEEecCCCcEEEEECCCCce--eeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCc---------------e
Q 010470 365 TIFSGHIDGNLRLWDIQTGKL--LSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL---------------E 427 (510)
Q Consensus 365 ~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~---------------~ 427 (510)
+|++|+.||.|++||.+++.. ...+..|. ..|.+++|+|+|++|++++.|+.|++||.... .
T Consensus 164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~-~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~ 242 (345)
T 3fm0_A 164 LLASASYDDTVKLYREEEDDWVCCATLEGHE-STVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK 242 (345)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEE
T ss_pred EEEEEeCCCcEEEEEecCCCEEEEEEecCCC-CceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccc
Confidence 999999999999999987753 45666666 89999999999999999999999999997422 1
Q ss_pred eeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcce---------eecccccCcCEEEEEEeCCCC-cE
Q 010470 428 VCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADI---------VRTLKEHTAPVLSCSWSGLGK-PL 497 (510)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~---------~~~~~~~~~~v~~~~~~~~~~-~l 497 (510)
.+..+.. .....+..++|+|++..|++++.|+.|++|+...+.. .....+|...|++++|+|++. +|
T Consensus 243 ~~~~~~~---~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l 319 (345)
T 3fm0_A 243 CICTLSG---FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLL 319 (345)
T ss_dssp EEEEECS---SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEE
T ss_pred eeEEecC---CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEE
Confidence 1222222 1223455699999999999999999999999875431 123457999999999999985 89
Q ss_pred EEeeCCCeEEEcC
Q 010470 498 ASADKNGVVCVWT 510 (510)
Q Consensus 498 ~s~~~dg~i~iwd 510 (510)
++|+.||.|++|+
T Consensus 320 aS~s~Dg~v~~W~ 332 (345)
T 3fm0_A 320 ASCSDDGEVAFWK 332 (345)
T ss_dssp EEEETTSCEEEEE
T ss_pred EEcCCCCcEEEEE
Confidence 9999999999996
No 12
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=9.8e-45 Score=342.37 Aligned_cols=287 Identities=25% Similarity=0.405 Sum_probs=243.0
Q ss_pred ccceeeccccccceEEEEE-----ec-CCCEEEEeeCCCeEEEEeCCCC-------cceecccccccceeEEEEecCCCE
Q 010470 215 STCKHKINAHEGGCASILF-----EY-NSARLISGGQDKSIKLWDTNTG-------SLSSTLYGCLGSVLDLAITHDNRS 281 (510)
Q Consensus 215 ~~~~~~~~~h~~~v~~~~~-----s~-~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~ 281 (510)
..+...+.+|.+.|++++| ++ ++.+|++|+.|++|++||+.++ .....+.+|...|.+++|+|++.+
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence 3467789999999999999 76 8999999999999999998753 345678899999999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee---eecCceeEEE
Q 010470 282 VIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI---IFHSNCNALA 358 (510)
Q Consensus 282 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~i~~i~ 358 (510)
+++++.|+.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.|+.|++||+......... .....+.+++
T Consensus 91 l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~ 169 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVR 169 (343)
T ss_dssp EEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS-STTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEE
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeee
Confidence 99999999999999999999999999999999999999 8899999999999999999744332222 1234599999
Q ss_pred EcCCC----------CEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC-ce
Q 010470 359 FSMDG----------QTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS-LE 427 (510)
Q Consensus 359 ~~~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~-~~ 427 (510)
|+|++ .+|++++.||.|++|| ..+.....+..|. ..|.+++|+|+|++|++++.|+.|++||+.. ..
T Consensus 170 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~-~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~ 247 (343)
T 2xzm_R 170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHE-SNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY 247 (343)
T ss_dssp ECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCS-SCEEEEEECTTSSEEEEEETTCEEEEEESSCCSS
T ss_pred eccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCcc-ccceEEEECCCCCEEEEEcCCCeEEEEECCCCcc
Confidence 99987 7899999999999999 4566667777776 8999999999999999999999999999954 33
Q ss_pred eeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceee--ccc-----------ccCcCEEEEEEeCCC
Q 010470 428 VCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVR--TLK-----------EHTAPVLSCSWSGLG 494 (510)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~-----------~~~~~v~~~~~~~~~ 494 (510)
....+. +.. .+..++|+|++.++++|+ |+.|++|++.+++... .+. +|...|.+++|+|+|
T Consensus 248 ~~~~~~-~~~----~v~~v~~sp~~~~la~~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 321 (343)
T 2xzm_R 248 PQREFD-AGS----TINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALG 321 (343)
T ss_dssp CSEEEE-CSS----CEEEEEECSSSCEEEEEE-SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSS
T ss_pred cceeec-CCC----cEEEEEECCCCCEEEEEC-CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCC
Confidence 333332 222 345699999999887665 7779999998766543 332 688899999999999
Q ss_pred CcEEEeeCCCeEEEcC
Q 010470 495 KPLASADKNGVVCVWT 510 (510)
Q Consensus 495 ~~l~s~~~dg~i~iwd 510 (510)
++|++|+.||.|++|+
T Consensus 322 ~~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 322 KKLFAGFTDGVIRTFS 337 (343)
T ss_dssp CCEEEEETTSEEEEEE
T ss_pred CeEEEecCCceEEEEE
Confidence 9999999999999996
No 13
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.5e-45 Score=343.12 Aligned_cols=280 Identities=21% Similarity=0.278 Sum_probs=235.3
Q ss_pred ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC-----------CcceecccccccceeEEEEecCCCEEEEEeCCCeE
Q 010470 223 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNT-----------GSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNL 291 (510)
Q Consensus 223 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 291 (510)
.|...|.+++|+|||.+|++++ |+++++||... .........+...|.+++|+|++ .|++|+.||.|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence 5777899999999999999887 67788876321 11111223456789999999985 68899999999
Q ss_pred EEEEcCCCCeeEe----ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCC-E
Q 010470 292 YVWDVNSGRVRHT----LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQ-T 365 (510)
Q Consensus 292 ~iwd~~~~~~~~~----~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~-~ 365 (510)
+|||+.+++.... +.+|.+.|++++|+| ++.+|++|+.||+|++||+.+++++..+..| ..|.+++|+|++. +
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence 9999999875543 458999999999999 8999999999999999999999999999876 4599999999885 7
Q ss_pred EEEecCCCcEEEEECCCCceeeeeccc-ccccEEEEEEcCC-CCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCc
Q 010470 366 IFSGHIDGNLRLWDIQTGKLLSEVAAH-SLAAVTSISLSRS-GNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNW 443 (510)
Q Consensus 366 l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~i~~i~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 443 (510)
|++|+.||.|++||+++++....+... +...+.+++|+|+ +.+|++|+.||.|++||+++++.+..+..|...+..
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~-- 262 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTG-- 262 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEE--
T ss_pred eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEE--
Confidence 889999999999999999988877543 2257899999995 568899999999999999999999999888776654
Q ss_pred eeEEEcCCC-CEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCc-EEEeeCCCeEEEcC
Q 010470 444 SRSCISPDE-SYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKP-LASADKNGVVCVWT 510 (510)
Q Consensus 444 ~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~iwd 510 (510)
++|+|+| ++|++|+.||+|+|||+.+++++ .+.+|.+.|++++|+|++.. |++||.||.|++|+
T Consensus 263 --v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 263 --LVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp --EEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred --EEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 9999998 57999999999999999988765 46789999999999999875 66899999999995
No 14
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.6e-45 Score=347.65 Aligned_cols=282 Identities=19% Similarity=0.249 Sum_probs=237.4
Q ss_pred cccccceEEEEEecCCCEEEEeeC------CCeEEEEeCCCCcceec----ccccccceeEEEEecCCCEEEEEeCCCeE
Q 010470 222 NAHEGGCASILFEYNSARLISGGQ------DKSIKLWDTNTGSLSST----LYGCLGSVLDLAITHDNRSVIAASSSNNL 291 (510)
Q Consensus 222 ~~h~~~v~~~~~s~~~~~l~s~~~------dg~i~iwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 291 (510)
.+|.+.|++++|||||++|++|+. |+.|++|+..++..... ..+|...|++++|+|++. +++++.||.|
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v 117 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAV 117 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCE
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEE
Confidence 479999999999999999999997 78899999887765433 346888999999999975 5678889999
Q ss_pred EEEEcCCCCeeE----eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCC-E
Q 010470 292 YVWDVNSGRVRH----TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQ-T 365 (510)
Q Consensus 292 ~iwd~~~~~~~~----~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~-~ 365 (510)
++||+.+++... ...+|...|.+++|+| ++.+|++|+.||.|++||+.+++++..+..+ ..+++++|+|++. +
T Consensus 118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~ 196 (357)
T 4g56_B 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTI 196 (357)
T ss_dssp EEC--------CCCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSC
T ss_pred EEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCce
Confidence 999998876432 3457999999999999 8899999999999999999999999998776 4599999999875 7
Q ss_pred EEEecCCCcEEEEECCCCceeeeeccc-ccccEEEEEEcCC-CCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCc
Q 010470 366 IFSGHIDGNLRLWDIQTGKLLSEVAAH-SLAAVTSISLSRS-GNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNW 443 (510)
Q Consensus 366 l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~i~~i~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 443 (510)
+++++.||.|++||+++++....+... +...+.+++|+|+ +.+|++++.|+.|++||+++++....+..+...+..
T Consensus 197 ~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~-- 274 (357)
T 4g56_B 197 FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITG-- 274 (357)
T ss_dssp EEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEE--
T ss_pred eeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEE--
Confidence 889999999999999998877665432 3367999999997 468889999999999999999998888877766554
Q ss_pred eeEEEcCCC-CEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeC-CCCcEEEeeCCCeEEEcC
Q 010470 444 SRSCISPDE-SYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG-LGKPLASADKNGVVCVWT 510 (510)
Q Consensus 444 ~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd 510 (510)
++|+|++ ++|++|+.||+|+|||+.+++++..+ +|.+.|++++|+| ++.+|++|+.||.|++|+
T Consensus 275 --l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 275 --LAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp --EEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred --EEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence 9999987 57999999999999999999887765 6999999999998 788999999999999996
No 15
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.1e-44 Score=364.26 Aligned_cols=288 Identities=21% Similarity=0.332 Sum_probs=247.6
Q ss_pred ceeeccccccceEEEEEecCCC-EEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEE
Q 010470 217 CKHKINAHEGGCASILFEYNSA-RLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD 295 (510)
Q Consensus 217 ~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 295 (510)
+...+.+|.+.|++++|+|++. .|++|+.|++|++||..+++....+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 139 ~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd 218 (611)
T 1nr0_A 139 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN 218 (611)
T ss_dssp BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEE
Confidence 4557889999999999999987 599999999999999999998899999999999999999999999999999999999
Q ss_pred cCCCCeeEeec-------CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee-------------------
Q 010470 296 VNSGRVRHTLT-------GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII------------------- 349 (510)
Q Consensus 296 ~~~~~~~~~~~-------~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------------- 349 (510)
+.+++....+. +|.+.|.+++|+| ++.+|++++.|++|++||+.+++++..+.
T Consensus 219 ~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (611)
T 1nr0_A 219 GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 297 (611)
T ss_dssp TTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCE
T ss_pred CCCCcEeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEE
Confidence 99999888874 7999999999999 88999999999999999999887665442
Q ss_pred ------------------------ec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecc-------------
Q 010470 350 ------------------------FH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAA------------- 391 (510)
Q Consensus 350 ------------------------~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------- 391 (510)
.| ..|.+++|+|+|++|++++.||.|++||+.++.....+..
T Consensus 298 ~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~ 377 (611)
T 1nr0_A 298 VSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS 377 (611)
T ss_dssp EEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECT
T ss_pred EEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECC
Confidence 22 3589999999999999999999999999987654322100
Q ss_pred --------------------------------------------------------------------cccccEEEEEEc
Q 010470 392 --------------------------------------------------------------------HSLAAVTSISLS 403 (510)
Q Consensus 392 --------------------------------------------------------------------~~~~~i~~i~~~ 403 (510)
.+...+.+++|+
T Consensus 378 ~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~s 457 (611)
T 1nr0_A 378 KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALS 457 (611)
T ss_dssp TSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEEC
T ss_pred CCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEe
Confidence 001346789999
Q ss_pred CCCCEEEEEecCCcEEEEEcCCceee--eEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC-cceeec--c
Q 010470 404 RSGNIILTSGRDNLHNLFDIRSLEVC--GSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK-ADIVRT--L 478 (510)
Q Consensus 404 ~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~--~ 478 (510)
|+|++|++++.|+.|++||+.++... .. ..+... +.+++|+|+|++|++++.|++|++|++.+ ++.... +
T Consensus 458 pdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~----v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~ 532 (611)
T 1nr0_A 458 NDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAE----ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSW 532 (611)
T ss_dssp TTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSC----EEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCC
T ss_pred CCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCc----eEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeee
Confidence 99999999999999999999876432 22 334433 45599999999999999999999999987 666554 3
Q ss_pred cccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 479 KEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 479 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
..|...|.+++|+|+|++|++|+.||.|++||
T Consensus 533 ~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 533 TFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eecccceeEEEECCCCCEEEEEECCCcEEEEE
Confidence 45999999999999999999999999999996
No 16
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-44 Score=334.46 Aligned_cols=287 Identities=15% Similarity=0.236 Sum_probs=233.4
Q ss_pred ccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCC--cceecc-cc-cccceeEEEEecCCCEEEEEeCCCe
Q 010470 215 STCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG--SLSSTL-YG-CLGSVLDLAITHDNRSVIAASSSNN 290 (510)
Q Consensus 215 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~d~~ 290 (510)
..+..++.+|.++|.+++|+|+ +|++|+.|+.|++||+.++ .....+ .+ |...|.+++|+|++++|++++.|+.
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 81 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST 81 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence 3467789999999999999987 9999999999999999875 334444 34 9999999999999999999999999
Q ss_pred EEEEEcCC-------CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC----eEeeeeeec-CceeEEE
Q 010470 291 LYVWDVNS-------GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG----YCVNTIIFH-SNCNALA 358 (510)
Q Consensus 291 i~iwd~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~-~~i~~i~ 358 (510)
|++||+.. .+....+.+|...|.+++|+| ++.+|++|+.|++|++||+... .++..+..+ ..|.+++
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 99999853 346677889999999999999 8899999999999999999432 455666555 4599999
Q ss_pred EcCCCCEEEEecCCCcEEEEECCCC--ceeeeecccccccEEEEEEcCC--CCEEEEEecCCcEEEEEcCCc--------
Q 010470 359 FSMDGQTIFSGHIDGNLRLWDIQTG--KLLSEVAAHSLAAVTSISLSRS--GNIILTSGRDNLHNLFDIRSL-------- 426 (510)
Q Consensus 359 ~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~d~~i~i~d~~~~-------- 426 (510)
|+|++.+|++|+.||.|++||..++ +++..+..|. ..|.+++|+|+ +.+|++++.|+.|++||+.++
T Consensus 161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~ 239 (330)
T 2hes_X 161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHE-GTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEW 239 (330)
T ss_dssp ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCS-SCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCC-CcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccccee
Confidence 9999999999999999999998776 5677777776 89999999998 778999999999999998754
Q ss_pred eeeeEeec-CCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc--eee-cccccCc-CEEEEEEeC--CCCcEEE
Q 010470 427 EVCGSLRA-TGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD--IVR-TLKEHTA-PVLSCSWSG--LGKPLAS 499 (510)
Q Consensus 427 ~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~-~~~~~~~-~v~~~~~~~--~~~~l~s 499 (510)
.....+.. +.. .+..++|++++ +|++++.||.|++|+..++. .+. .+.+|.. .|.+++|+| ++++|++
T Consensus 240 ~~~~~~~~~h~~----~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las 314 (330)
T 2hes_X 240 VCEAILPDVHKR----QVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILAT 314 (330)
T ss_dssp EEEEECCSCCSS----CEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEE
T ss_pred EEeeeccccccc----ceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEE
Confidence 22333322 333 34558999765 88999999999999988763 332 3456876 899999999 6889999
Q ss_pred eeCCCeEEEcC
Q 010470 500 ADKNGVVCVWT 510 (510)
Q Consensus 500 ~~~dg~i~iwd 510 (510)
|+.||.|++||
T Consensus 315 ~s~Dg~v~~W~ 325 (330)
T 2hes_X 315 GGDDGIVNFWS 325 (330)
T ss_dssp EETTSEEEEEE
T ss_pred ecCCCcEEEEE
Confidence 99999999996
No 17
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.8e-43 Score=356.95 Aligned_cols=301 Identities=28% Similarity=0.481 Sum_probs=268.3
Q ss_pred HhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccc
Q 010470 188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCL 267 (510)
Q Consensus 188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 267 (510)
.+++++.|+.+++|+.. ......+.+|.+.|.+++|+|++.+|++++.||.|++||... ..+..+.+|.
T Consensus 276 ~l~~~~~d~~i~~w~~~----------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~ 344 (577)
T 2ymu_A 276 TIASASDDKTVKLWNRN----------GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHS 344 (577)
T ss_dssp EEEEEETTSCEEEEETT----------SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCS
T ss_pred EEEEEeCCCEEEEEeCC----------CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCC
Confidence 35566777888888632 345677889999999999999999999999999999999864 4456778899
Q ss_pred cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeee
Q 010470 268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT 347 (510)
Q Consensus 268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 347 (510)
..|.+++|+|+++++++++.|+.|++||. +++.+..+.+|...|.+++|+| ++.+|++++.|+.|++||. +++.+..
T Consensus 345 ~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~ 421 (577)
T 2ymu_A 345 SSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQT 421 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEE
Confidence 99999999999999999999999999994 5788889999999999999999 8899999999999999996 5666666
Q ss_pred eeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCc
Q 010470 348 IIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL 426 (510)
Q Consensus 348 ~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~ 426 (510)
+..+ ..+.+++|+|++++|++++.|+.|++||. +++.+..+..+. ..|.+++|+|++++|++++.|+.|++||. ++
T Consensus 422 ~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~-~~v~~~~~spd~~~las~~~d~~i~iw~~-~~ 498 (577)
T 2ymu_A 422 LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHS-SSVRGVAFSPDGQTIASASDDKTVKLWNR-NG 498 (577)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCS-SCEEEEEECTTSCEEEEEETTSEEEEEET-TS
T ss_pred ecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCC-CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CC
Confidence 6655 56999999999999999999999999996 677777887776 89999999999999999999999999995 67
Q ss_pred eeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeE
Q 010470 427 EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVV 506 (510)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i 506 (510)
+.+..+.+|...+. +++|+|+|++|++++.||.|++||. +++++..+.+|.++|++++|+|||++|++++.||.|
T Consensus 499 ~~~~~~~~h~~~v~----~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i 573 (577)
T 2ymu_A 499 QLLQTLTGHSSSVR----GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTV 573 (577)
T ss_dssp CEEEEEECCSSCEE----EEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred CEEEEEeCCCCCEE----EEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEE
Confidence 77888888776654 4999999999999999999999995 688889999999999999999999999999999999
Q ss_pred EEcC
Q 010470 507 CVWT 510 (510)
Q Consensus 507 ~iwd 510 (510)
++||
T Consensus 574 ~~Wd 577 (577)
T 2ymu_A 574 KLWN 577 (577)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9998
No 18
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-43 Score=333.82 Aligned_cols=286 Identities=19% Similarity=0.351 Sum_probs=259.5
Q ss_pred ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470 217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV 296 (510)
Q Consensus 217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 296 (510)
....+.+|.+.|++++|+|+|++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCC-----CcEEEEECCCCeE-----------eeeeeec-C--ceeEE
Q 010470 297 NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD-----RTLKVWDLHKGYC-----------VNTIIFH-S--NCNAL 357 (510)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~-----------~~~~~~~-~--~i~~i 357 (510)
.+++.+..+. +...|.++.|+| ++.++++++.+ |.|.+||+..+.. ...+..+ . .+.++
T Consensus 104 ~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3zwl_B 104 SNGQCVATWK-SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181 (369)
T ss_dssp TTCCEEEEEE-CSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred CCCcEEEEee-cCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence 9999998888 889999999999 88999999988 9999999876532 2222222 2 69999
Q ss_pred EEcCCCCEEEEecCCCcEEEEECCC-CceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCC
Q 010470 358 AFSMDGQTIFSGHIDGNLRLWDIQT-GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATG 436 (510)
Q Consensus 358 ~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 436 (510)
+|+|++++|++++.||.|++||+++ +..+..+..+. ..|.+++|+|++.+|++++.|+.|++||+++++....+...
T Consensus 182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~- 259 (369)
T 3zwl_B 182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHE-KSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETD- 259 (369)
T ss_dssp EECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCS-SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS-
T ss_pred EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCC-CceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCC-
Confidence 9999999999999999999999998 67777777776 89999999999999999999999999999999988887733
Q ss_pred CeeecCceeEEEcCCCCEEEEEcCCC--------------eEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeC
Q 010470 437 NRVASNWSRSCISPDESYVAAGSADG--------------SVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADK 502 (510)
Q Consensus 437 ~~~~~~~~~~~~s~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 502 (510)
. .+..++|+|++.++++++.++ .+++||+.+++.+..+.+|...|.+++|+|++++|++++.
T Consensus 260 ~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 335 (369)
T 3zwl_B 260 C----PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGE 335 (369)
T ss_dssp S----CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred C----CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcC
Confidence 2 334589999999999999888 8999999999999999999999999999999999999999
Q ss_pred CCeEEEcC
Q 010470 503 NGVVCVWT 510 (510)
Q Consensus 503 dg~i~iwd 510 (510)
||.|++|+
T Consensus 336 dg~v~iw~ 343 (369)
T 3zwl_B 336 DGFIRLHH 343 (369)
T ss_dssp TSEEEEEE
T ss_pred CCeEEEEE
Confidence 99999996
No 19
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.4e-43 Score=325.71 Aligned_cols=270 Identities=17% Similarity=0.282 Sum_probs=249.0
Q ss_pred HhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccc
Q 010470 188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCL 267 (510)
Q Consensus 188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 267 (510)
.+++++.|+.+++|+.... .......+.+|...|.+++|++++.++++|+.|++|++||+.+++.+..+..|.
T Consensus 50 ~l~tgs~D~~v~vW~~~~~-------~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~ 122 (321)
T 3ow8_A 50 TVVTGSLDDLVKVWKWRDE-------RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGP 122 (321)
T ss_dssp EEEEEETTSCEEEEEEETT-------EEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCT
T ss_pred EEEEEcCCCCEEEEECCCC-------CeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCC
Confidence 4788999999999985431 123456789999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeee
Q 010470 268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT 347 (510)
Q Consensus 268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 347 (510)
..+.+++|+|++++|++++.||.|++|++.+++....+..|...|.+++|+| ++.+|++|+.||.|++||+.+++.+..
T Consensus 123 ~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~ 201 (321)
T 3ow8_A 123 VDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHT 201 (321)
T ss_dssp TCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred ccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence 9999999999999999999999999999999999999999999999999999 899999999999999999999999988
Q ss_pred eeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCc
Q 010470 348 IIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL 426 (510)
Q Consensus 348 ~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~ 426 (510)
+..+ ..+.+++|+|++.+|++|+.||.|++||++++.....+..|. ..|.+++|+|++.+|++++.|+.|++||+.++
T Consensus 202 ~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~ 280 (321)
T 3ow8_A 202 LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA-SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR 280 (321)
T ss_dssp ECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred EcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCC-CceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Confidence 8766 469999999999999999999999999999999998888877 89999999999999999999999999999999
Q ss_pred eeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470 427 EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS 470 (510)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 470 (510)
+.+..+..+...+. .++|+|+|.+|++++.||.|++||+.
T Consensus 281 ~~~~~~~~h~~~v~----~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 281 TCVHTFFDHQDQVW----GVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEEECCCSSCEE----EEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEEEEcCCCCcEE----EEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999888776654 49999999999999999999999964
No 20
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.6e-42 Score=324.73 Aligned_cols=287 Identities=23% Similarity=0.410 Sum_probs=249.5
Q ss_pred cceeeccccccceEEEEEecC-CCEEEEeeCCCeEEEEeCCCCc-----ceecccccccceeEEEEecCCCEEEEEeCCC
Q 010470 216 TCKHKINAHEGGCASILFEYN-SARLISGGQDKSIKLWDTNTGS-----LSSTLYGCLGSVLDLAITHDNRSVIAASSSN 289 (510)
Q Consensus 216 ~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 289 (510)
....+|+||.+.|++|+|+|+ +++|+|||.||+|+|||+.++. +...+.+|...|.+++|+|++++|++++.|+
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~ 108 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence 466789999999999999997 6899999999999999987654 3566789999999999999999999999999
Q ss_pred eEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee-e-cCceeEEEEcCCC--CE
Q 010470 290 NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII-F-HSNCNALAFSMDG--QT 365 (510)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~-~~~i~~i~~~~~~--~~ 365 (510)
.|++|+............+...+....+++ .+.+|++++.|+.+++||+.......... . ...+.+++|++++ .+
T Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 187 (340)
T 4aow_A 109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 187 (340)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCE
T ss_pred cceEEeecccceeeeecCCCCceeEEEEee-cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcE
Confidence 999999999988888888899999999988 78899999999999999998665443322 2 2458889998754 57
Q ss_pred EEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCcee
Q 010470 366 IFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSR 445 (510)
Q Consensus 366 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 445 (510)
+++++.|+.|++||+++++.+..+..+. ..|++++|+|++++|++++.|+.|++||+++.+.+..+..+.. +..
T Consensus 188 ~~s~~~d~~i~i~d~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~-----v~~ 261 (340)
T 4aow_A 188 IVSCGWDKLVKVWNLANCKLKTNHIGHT-GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-----INA 261 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCS-SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSC-----EEE
T ss_pred EEEEcCCCEEEEEECCCCceeeEecCCC-CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCce-----EEe
Confidence 8899999999999999999999888877 8999999999999999999999999999999998888776542 345
Q ss_pred EEEcCCCCEEEEEcCCCeEEEEeCCCcceeecc---------cccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 446 SCISPDESYVAAGSADGSVYIWSISKADIVRTL---------KEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 446 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
++|+|++.+++ ++.|+.|++||+.++..+..+ .+|...|++++|+|+|++|++|+.||.|+|||
T Consensus 262 ~~~~~~~~~~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 262 LCFSPNRYWLC-AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp EEECSSSSEEE-EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eecCCCCceee-ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 88999887665 556999999999887665544 35888999999999999999999999999996
No 21
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.7e-43 Score=338.79 Aligned_cols=268 Identities=23% Similarity=0.412 Sum_probs=247.3
Q ss_pred HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc
Q 010470 187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC 266 (510)
Q Consensus 187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 266 (510)
..+++++.||.+++|+... ..+..++.+|.+.|.+++|+|+|++|++|+.||+|++||+.+++.+..+.+|
T Consensus 121 ~~l~s~s~Dg~i~vwd~~~---------~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h 191 (410)
T 1vyh_C 121 SVMVSASEDATIKVWDYET---------GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGH 191 (410)
T ss_dssp SEEEEEESSSCEEEEETTT---------CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCC
T ss_pred CEEEEEeCCCeEEEEECCC---------CcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCC
Confidence 4567888899999998543 3456788999999999999999999999999999999999999999999999
Q ss_pred ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEee
Q 010470 267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN 346 (510)
Q Consensus 267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 346 (510)
...|.+++|+|++.+|++|+.|+.|++||+.++.++..+.+|...|.++.++| ++.++++|+.||.|++||+.++.+..
T Consensus 192 ~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~ 270 (410)
T 1vyh_C 192 DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKA 270 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceee
Confidence 99999999999999999999999999999999999999999999999999999 88999999999999999999999888
Q ss_pred eeeec-CceeEEEEcCC--------------------CCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCC
Q 010470 347 TIIFH-SNCNALAFSMD--------------------GQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRS 405 (510)
Q Consensus 347 ~~~~~-~~i~~i~~~~~--------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~ 405 (510)
.+..+ ..+.+++|+|+ |.+|++|+.||.|++||++++..+..+..|. ..|.+++|+|+
T Consensus 271 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~-~~v~~v~~~~~ 349 (410)
T 1vyh_C 271 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD-NWVRGVLFHSG 349 (410)
T ss_dssp EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCS-SCEEEEEECSS
T ss_pred EecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCC-CcEEEEEEcCC
Confidence 88666 45999999996 6789999999999999999999999998876 89999999999
Q ss_pred CCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470 406 GNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI 469 (510)
Q Consensus 406 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~ 469 (510)
|.+|++++.|+.|++||+.+++.+..+..|...+.. ++|+|++.+|++|+.||+|+||++
T Consensus 350 g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~----l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 350 GKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTS----LDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEE----EEECSSSSCEEEEETTSEEEEEC-
T ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEE----EEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999999999999998888888766554 999999999999999999999986
No 22
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5.7e-43 Score=337.68 Aligned_cols=286 Identities=16% Similarity=0.225 Sum_probs=257.3
Q ss_pred cceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc------ceecccccccceeEEEEecC----C---CEE
Q 010470 216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS------LSSTLYGCLGSVLDLAITHD----N---RSV 282 (510)
Q Consensus 216 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~----~---~~l 282 (510)
.....+.+|.++|++++|+| ++|++|+.||.|++||+.++. .+..+.+|...|.+++|+|+ + .+|
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 35677899999999999998 799999999999999999887 67888899999999999999 9 999
Q ss_pred EEEeCCCeEEEEEcCCCCe-----eEeecCC-----CCceEEEEEe----cCCCCE-EEEEeCCCcEEEEECCC------
Q 010470 283 IAASSSNNLYVWDVNSGRV-----RHTLTGH-----TDKVCAVDVS----KISSRH-VVSAAYDRTLKVWDLHK------ 341 (510)
Q Consensus 283 ~~~~~d~~i~iwd~~~~~~-----~~~~~~~-----~~~v~~i~~~----~~~~~~-l~s~~~dg~i~iwd~~~------ 341 (510)
++++.||.|++||+.+++. ...+..| ...|.+++|+ | ++.+ |++++.||.|++||+.+
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCccccccc
Confidence 9999999999999998887 8888888 5999999999 8 7888 99999999999999988
Q ss_pred CeEee-----eeee--------cCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecc---c---ccccEEEEEE
Q 010470 342 GYCVN-----TIIF--------HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAA---H---SLAAVTSISL 402 (510)
Q Consensus 342 ~~~~~-----~~~~--------~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~---~~~~i~~i~~ 402 (510)
+..+. .+.. ...+.+++|+|++ ++++|+.||.|++||+++++.+..+.. + . ..|.+++|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~-~~i~~i~~ 241 (397)
T 1sq9_A 164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNS-NSIRSVKF 241 (397)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCC-CCEEEEEE
T ss_pred cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccC-CccceEEE
Confidence 66555 5543 4569999999999 999999999999999999999988887 5 4 89999999
Q ss_pred cCCCCEEEEEecC---CcEEEEEcCCceeeeEeec-------------CCCeeecCceeEEEcCCCCEEEEEcCCCeEEE
Q 010470 403 SRSGNIILTSGRD---NLHNLFDIRSLEVCGSLRA-------------TGNRVASNWSRSCISPDESYVAAGSADGSVYI 466 (510)
Q Consensus 403 ~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~-------------~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~i 466 (510)
+|++.+|++++.| +.|++||+++++.+..+.. +... +.+++|+|++++|++++.||.|++
T Consensus 242 ~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg~i~i 317 (397)
T 1sq9_A 242 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW----VMSLSFNDSGETLCSAGWDGKLRF 317 (397)
T ss_dssp CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSC----EEEEEECSSSSEEEEEETTSEEEE
T ss_pred CCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCc----EEEEEECCCCCEEEEEeCCCeEEE
Confidence 9999999999999 9999999999998888876 4444 445999999999999999999999
Q ss_pred EeCCCcceeeccc------cc---------------CcCEEEEEEeCCC----------CcEEEeeCCCeEEEcC
Q 010470 467 WSISKADIVRTLK------EH---------------TAPVLSCSWSGLG----------KPLASADKNGVVCVWT 510 (510)
Q Consensus 467 wd~~~~~~~~~~~------~~---------------~~~v~~~~~~~~~----------~~l~s~~~dg~i~iwd 510 (510)
||+.+++.+..+. .| ..+|.+++|+|++ ++|++++.||.|++||
T Consensus 318 wd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 318 WDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp EETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred EEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 9999999999988 77 9999999999998 7999999999999996
No 23
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.1e-41 Score=316.92 Aligned_cols=281 Identities=17% Similarity=0.309 Sum_probs=249.4
Q ss_pred eccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc-----ccccceeEEEEecCCCEEEEEeCCCeEEEE
Q 010470 220 KINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY-----GCLGSVLDLAITHDNRSVIAASSSNNLYVW 294 (510)
Q Consensus 220 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 294 (510)
...+|.+.|++++|+|++++|++++ ||.|++||+.++.....+. +|...|.+++|+|+++++++++.||.|++|
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 124 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 3458999999999999999999999 9999999998776433332 789999999999999999999999999999
Q ss_pred EcCCCC--eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecC
Q 010470 295 DVNSGR--VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHI 371 (510)
Q Consensus 295 d~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~ 371 (510)
|+.+++ ....+..|...|.+++|+| ++.++++++.||.|++||+++++.+..+..+ ..+.+++|+|++++|++++.
T Consensus 125 d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 203 (337)
T 1gxr_A 125 DLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203 (337)
T ss_dssp ECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ECCCCCcceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec
Confidence 999887 6677888999999999999 8899999999999999999999988888765 56999999999999999999
Q ss_pred CCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCC
Q 010470 372 DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD 451 (510)
Q Consensus 372 dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 451 (510)
||.|++||+++++.+..+... ..+.+++|+|++.++++++.++.|++||+.++... .+..+... +..++|+|+
T Consensus 204 dg~i~~~d~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~----v~~~~~~~~ 276 (337)
T 1gxr_A 204 DNTVRSWDLREGRQLQQHDFT--SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESC----VLSLKFAYC 276 (337)
T ss_dssp TSEEEEEETTTTEEEEEEECS--SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSC----EEEEEECTT
T ss_pred CCcEEEEECCCCceEeeecCC--CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccc----eeEEEECCC
Confidence 999999999999888777543 78999999999999999999999999999987754 34444443 445999999
Q ss_pred CCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 452 ESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 452 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+++|++++.||.|++||+.+++.+... .|...|.+++|+|++++|++++.||.|++|+
T Consensus 277 ~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 277 GKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 999999999999999999998887544 4888999999999999999999999999996
No 24
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-42 Score=337.37 Aligned_cols=314 Identities=18% Similarity=0.262 Sum_probs=268.6
Q ss_pred HhhhhcCCceEEeccc----cccc-------ccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC
Q 010470 188 KLAKQQVDGVVRRSEE----GAEF-------FAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT 256 (510)
Q Consensus 188 ~~~~~~~d~~~~~~~~----~~~~-------~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 256 (510)
.+++++.||.+++|+. .... ......+........+|.+.|++++|+|++++|++|+.||.|++|| .+
T Consensus 60 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~ 138 (425)
T 1r5m_A 60 ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KT 138 (425)
T ss_dssp EEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TT
T ss_pred EEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CC
Confidence 5778888999999986 3211 0000111111122334788999999999999999999999999999 66
Q ss_pred CcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCc---------------eEEEEEecCC
Q 010470 257 GSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDK---------------VCAVDVSKIS 321 (510)
Q Consensus 257 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---------------v~~i~~~~~~ 321 (510)
+..+..+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+..+... +.++.|+|
T Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 216 (425)
T 1r5m_A 139 GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD-- 216 (425)
T ss_dssp SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEE--
T ss_pred CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcC--
Confidence 7888889999999999999999999999999999999999999999988888777 99999998
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEE
Q 010470 322 SRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSI 400 (510)
Q Consensus 322 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i 400 (510)
+..+++++.+|.|++||+.++..+..+..+ ..+.+++|+|++++|++++.||.|++||+++++.+..+..+. ..+.++
T Consensus 217 ~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~i~~~ 295 (425)
T 1r5m_A 217 DDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHS-QSIVSA 295 (425)
T ss_dssp TTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCS-SCEEEE
T ss_pred CCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCC-ccEEEE
Confidence 366889999999999999999888777655 569999999999999999999999999999999888887776 899999
Q ss_pred EEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc-------
Q 010470 401 SLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD------- 473 (510)
Q Consensus 401 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~------- 473 (510)
+|+|++ ++++++.|+.|++||+++++....+..+...+. .++|+|++++|++++.||.|++||+.++.
T Consensus 296 ~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~----~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~ 370 (425)
T 1r5m_A 296 SWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIF----AGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLY 370 (425)
T ss_dssp EEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEE----EEEECTTSSEEEEEETTSCEEEEECHHHHC------
T ss_pred EECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEE----EEEEcCCCCEEEEEECCCeEEEEECCCCccceeeee
Confidence 999999 999999999999999999999888887766554 48999999999999999999999999888
Q ss_pred -------------eeecccccCc--CEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 474 -------------IVRTLKEHTA--PVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 474 -------------~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
++..+..|.. .|++++|+|++++|++++.||.|++||
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 422 (425)
T 1r5m_A 371 GNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVA 422 (425)
T ss_dssp --------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEE
T ss_pred cccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEe
Confidence 8888998876 999999999999999999999999996
No 25
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=6.8e-42 Score=353.66 Aligned_cols=286 Identities=27% Similarity=0.452 Sum_probs=248.1
Q ss_pred ceeeccccccceEEEEEecCC-CEEEEeeCCCeEEEEeCCCCc-----ceecccccccceeEEEEecCCCEEEEEeCCCe
Q 010470 217 CKHKINAHEGGCASILFEYNS-ARLISGGQDKSIKLWDTNTGS-----LSSTLYGCLGSVLDLAITHDNRSVIAASSSNN 290 (510)
Q Consensus 217 ~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 290 (510)
....+.+|.+.|++++|+|++ ++|+||+.||+|++|++.+.. ....+.+|...|.+++|+|++++|++|+.||.
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence 455788999999999999864 799999999999999997643 34567899999999999999999999999999
Q ss_pred EEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee----ecCceeEEEEcCCC--C
Q 010470 291 LYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII----FHSNCNALAFSMDG--Q 364 (510)
Q Consensus 291 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~i~~i~~~~~~--~ 364 (510)
|++||+.++.....+.+|...|.+++|+| ++.+|++|+.|++|++||+.......... +...+.+++|+|++ .
T Consensus 454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 532 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP 532 (694)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred EEEEECCCCcceeEEeCCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence 99999999999999999999999999999 88999999999999999987554333221 22349999999987 6
Q ss_pred EEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCce
Q 010470 365 TIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWS 444 (510)
Q Consensus 365 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 444 (510)
.+++|+.||.|++||+++++....+..|. +.|++++|+|++++|++++.||.|++||+++++.+..+..+. .+.
T Consensus 533 ~l~s~s~d~~v~vwd~~~~~~~~~~~~h~-~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~-----~v~ 606 (694)
T 3dm0_A 533 TIVSASWDKTVKVWNLSNCKLRSTLAGHT-GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS-----VIH 606 (694)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCS-SCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSS-----CEE
T ss_pred eEEEEeCCCeEEEEECCCCcEEEEEcCCC-CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCC-----cEE
Confidence 89999999999999999999988888887 899999999999999999999999999999998877665432 345
Q ss_pred eEEEcCCCCEEEEEcCCCeEEEEeCCCcceeeccccc-------------------CcCEEEEEEeCCCCcEEEeeCCCe
Q 010470 445 RSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEH-------------------TAPVLSCSWSGLGKPLASADKNGV 505 (510)
Q Consensus 445 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------------~~~v~~~~~~~~~~~l~s~~~dg~ 505 (510)
+++|+|++.++++++ ++.|+|||+.++..+..+..+ ...+++++|+|+|++|++|+.||.
T Consensus 607 ~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~ 685 (694)
T 3dm0_A 607 ALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV 685 (694)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe
Confidence 699999999988876 455999999998877665432 123789999999999999999999
Q ss_pred EEEcC
Q 010470 506 VCVWT 510 (510)
Q Consensus 506 i~iwd 510 (510)
|++||
T Consensus 686 i~iW~ 690 (694)
T 3dm0_A 686 IRVWG 690 (694)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
No 26
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.8e-41 Score=342.31 Aligned_cols=301 Identities=29% Similarity=0.500 Sum_probs=268.0
Q ss_pred HhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccc
Q 010470 188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCL 267 (510)
Q Consensus 188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 267 (510)
.+++++.|+.+++|+.. ......+.+|...|++++|+|++..|++++.|+.|++||.. ++....+.+|.
T Consensus 235 ~l~~~~~d~~i~~w~~~----------~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~ 303 (577)
T 2ymu_A 235 TIASASDDKTVKLWNRN----------GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHS 303 (577)
T ss_dssp CEEEEETTSCEEEECTT----------SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCS
T ss_pred EEEEEeCCCEEEEEeCC----------CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCC
Confidence 45667788889988743 34667889999999999999999999999999999999975 66777888999
Q ss_pred cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeee
Q 010470 268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT 347 (510)
Q Consensus 268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 347 (510)
..|.+++|+|++.++++++.|+.|++||+. +..+..+.+|...|.+++|+| ++.++++++.||.|++||. ++..+..
T Consensus 304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~-~~~~~~~ 380 (577)
T 2ymu_A 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQT 380 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TCCEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcC-CCCEEEE
Confidence 999999999999999999999999999975 556677889999999999999 8899999999999999996 5666777
Q ss_pred eeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCc
Q 010470 348 IIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL 426 (510)
Q Consensus 348 ~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~ 426 (510)
+..+ ..+.+++|+|+|++|++++.|+.|++||. +++.+..+..+. ..|.+++|+|++++|++++.|+.|++||. ++
T Consensus 381 ~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~-~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~ 457 (577)
T 2ymu_A 381 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS-SSVWGVAFSPDDQTIASASDDKTVKLWNR-NG 457 (577)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCS-SCEEEEEECTTSSEEEEEETTSEEEEEET-TS
T ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCC-CCeEEEEECCCCCEEEEEcCCCEEEEEEC-CC
Confidence 6655 56999999999999999999999999995 677788888776 89999999999999999999999999996 45
Q ss_pred eeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeE
Q 010470 427 EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVV 506 (510)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i 506 (510)
+....+..+...+. +++|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+|+|++|++++.||.|
T Consensus 458 ~~~~~~~~~~~~v~----~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v 532 (577)
T 2ymu_A 458 QLLQTLTGHSSSVR----GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 532 (577)
T ss_dssp CEEEEEECCSSCEE----EEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred CEEEEEcCCCCCEE----EEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEE
Confidence 66777777766554 4999999999999999999999995 688889999999999999999999999999999999
Q ss_pred EEcC
Q 010470 507 CVWT 510 (510)
Q Consensus 507 ~iwd 510 (510)
++||
T Consensus 533 ~lwd 536 (577)
T 2ymu_A 533 KLWN 536 (577)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9997
No 27
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.1e-41 Score=326.93 Aligned_cols=288 Identities=15% Similarity=0.250 Sum_probs=243.9
Q ss_pred ccceeeccccccceEEEEEecCC-CEEEEeeCCCeEEEEeCCCCcceeccc--ccccceeEEEEec-CCCEEEEEeCCCe
Q 010470 215 STCKHKINAHEGGCASILFEYNS-ARLISGGQDKSIKLWDTNTGSLSSTLY--GCLGSVLDLAITH-DNRSVIAASSSNN 290 (510)
Q Consensus 215 ~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~d~~ 290 (510)
......+.+|.+.|++++|+|++ ++|++|+.||.|+|||+.++.....+. +|...|.+++|+| ++.+|++++.|+.
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 34566789999999999999999 999999999999999999887766654 6999999999999 7899999999999
Q ss_pred EEEEEcCCCCeeEeecC---CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCC-E
Q 010470 291 LYVWDVNSGRVRHTLTG---HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQ-T 365 (510)
Q Consensus 291 i~iwd~~~~~~~~~~~~---~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~-~ 365 (510)
|++||+.+ .....+.. |...|.+++|+| ++.+|++++.||.|++||+ ++..+..+..+ ..+.+++|+|++. +
T Consensus 143 i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~ 219 (383)
T 3ei3_B 143 TTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWL 219 (383)
T ss_dssp EEEEETTS-CEEEEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTE
T ss_pred EEEEECCC-CceEEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCE
Confidence 99999985 55555543 448899999999 8899999999999999999 56677777655 5699999999999 9
Q ss_pred EEEecCCCcEEEEECCC----CceeeeecccccccEEEEEEcC-CCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeee
Q 010470 366 IFSGHIDGNLRLWDIQT----GKLLSEVAAHSLAAVTSISLSR-SGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVA 440 (510)
Q Consensus 366 l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 440 (510)
+++|+.||.|++||+++ +..+..+ .+. ..|.+++|+| ++.+|++++.|+.|++||++++.....+..+.....
T Consensus 220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~-~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 297 (383)
T 3ei3_B 220 MATSSVDATVKLWDLRNIKDKNSYIAEM-PHE-KPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF 297 (383)
T ss_dssp EEEEETTSEEEEEEGGGCCSTTCEEEEE-ECS-SCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC
T ss_pred EEEEeCCCEEEEEeCCCCCcccceEEEe-cCC-CceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccc
Confidence 99999999999999987 5566555 343 8999999999 999999999999999999998877776665432211
Q ss_pred -------------cCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccc--cCcCEEEEEEeCCCCcEEEeeCCCe
Q 010470 441 -------------SNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE--HTAPVLSCSWSGLGKPLASADKNGV 505 (510)
Q Consensus 441 -------------~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~ 505 (510)
..+..++++|+|++ +|+.||.|++||+.+++.+..+.+ |...+..++|+|++++|++|+ ||.
T Consensus 298 ~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~ 374 (383)
T 3ei3_B 298 QHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFN 374 (383)
T ss_dssp TTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTE
T ss_pred ccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCc
Confidence 12223556666666 777899999999999999999887 567788889999999999997 999
Q ss_pred EEEcC
Q 010470 506 VCVWT 510 (510)
Q Consensus 506 i~iwd 510 (510)
|++||
T Consensus 375 i~iw~ 379 (383)
T 3ei3_B 375 ILIWN 379 (383)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
No 28
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-42 Score=337.10 Aligned_cols=306 Identities=15% Similarity=0.224 Sum_probs=261.8
Q ss_pred cCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC----Ccceeccccccc
Q 010470 193 QVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT----GSLSSTLYGCLG 268 (510)
Q Consensus 193 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~ 268 (510)
+.|+.+++|+....... .+...+ .|.+.|++++|+|++.+|++|+.||.|++||+.+ ...+..+.+|..
T Consensus 42 ~~d~~v~iw~~~~~~~~------~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~ 114 (416)
T 2pm9_A 42 STDSSLELWSLLAADSE------KPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSS 114 (416)
T ss_dssp CCCCCCEEEESSSGGGC------SCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSS
T ss_pred CCCCeEEEEEccCCCCC------cEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCcc
Confidence 67888999985442110 122223 5889999999999999999999999999999987 357788889999
Q ss_pred ceeEEEEecC-CCEEEEEeCCCeEEEEEcCCCC------eeEe---ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEE
Q 010470 269 SVLDLAITHD-NRSVIAASSSNNLYVWDVNSGR------VRHT---LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD 338 (510)
Q Consensus 269 ~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~------~~~~---~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd 338 (510)
.|.+++|+|+ +.+|++++.||.|++||+.+++ .... +..|...|.+++|+|.++.++++++.||.|++||
T Consensus 115 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd 194 (416)
T 2pm9_A 115 SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWD 194 (416)
T ss_dssp CCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEE
T ss_pred ceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEE
Confidence 9999999998 8999999999999999999876 3332 3679999999999995488999999999999999
Q ss_pred CCCCeEeeeeeec-------CceeEEEEcCCC-CEEEEecCCC---cEEEEECCCC-ceeeeec-ccccccEEEEEEcC-
Q 010470 339 LHKGYCVNTIIFH-------SNCNALAFSMDG-QTIFSGHIDG---NLRLWDIQTG-KLLSEVA-AHSLAAVTSISLSR- 404 (510)
Q Consensus 339 ~~~~~~~~~~~~~-------~~i~~i~~~~~~-~~l~~~~~dg---~i~i~d~~~~-~~~~~~~-~~~~~~i~~i~~~~- 404 (510)
++++..+..+..+ ..+.+++|+|++ .++++++.|| .|++||++++ .+...+. .+. ..|.+++|+|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~-~~v~~~~~s~~ 273 (416)
T 2pm9_A 195 LKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQ-KGILSLDWCHQ 273 (416)
T ss_dssp TTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCS-SCEEEEEECSS
T ss_pred CCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCcc-CceeEEEeCCC
Confidence 9999998888764 569999999997 6899999998 9999999986 5666666 555 8999999999
Q ss_pred CCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCC-CEEEEEcCCCeEEEEeCCCcceeeccc----
Q 010470 405 SGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE-SYVAAGSADGSVYIWSISKADIVRTLK---- 479 (510)
Q Consensus 405 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~---- 479 (510)
++.+|++++.|+.|++||+++++.+..+..+...+.. ++|+|++ .+|++++.||.|++|++.++.......
T Consensus 274 ~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~----~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~ 349 (416)
T 2pm9_A 274 DEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFK----TKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETET 349 (416)
T ss_dssp CSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCC----EEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-----
T ss_pred CCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEE----EEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccc
Confidence 9999999999999999999999999999887766554 9999999 899999999999999998765433221
Q ss_pred -------------------------------ccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 480 -------------------------------EHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 480 -------------------------------~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
.|..++.+++|+|+|++|++++.||.|+||+
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~ 411 (416)
T 2pm9_A 350 KQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITN 411 (416)
T ss_dssp -----------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBC
T ss_pred cccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEE
Confidence 1667888999999999999999999999997
No 29
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=8.5e-42 Score=332.02 Aligned_cols=308 Identities=19% Similarity=0.278 Sum_probs=259.9
Q ss_pred HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc
Q 010470 187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC 266 (510)
Q Consensus 187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 266 (510)
..+++++.|+.+++|+.... .....+.+| ..+....|+|++++|++|+.||.|++||+.++.....+.+|
T Consensus 69 ~~l~~~~~d~~v~i~d~~~~---------~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h 138 (420)
T 3vl1_A 69 SHLYKARLDGHDFLFNTIIR---------DGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAH 138 (420)
T ss_dssp TTEEEEEETTEEEEEECCSE---------ETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSS
T ss_pred CeEEEEEcCCcEEEEEeccc---------ceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccc
Confidence 34567777888888885432 122334455 45566688999999999999999999999999998888999
Q ss_pred ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEee
Q 010470 267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN 346 (510)
Q Consensus 267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 346 (510)
...|++++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.||.|++||+++++.+.
T Consensus 139 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~ 217 (420)
T 3vl1_A 139 VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIH 217 (420)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCceeE
Confidence 99999999999999999999999999999999999999999999999999999 88999999999999999999999888
Q ss_pred eeeec-------------------------CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEE
Q 010470 347 TIIFH-------------------------SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSIS 401 (510)
Q Consensus 347 ~~~~~-------------------------~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~ 401 (510)
.+..+ ..+.+++|+|++++|++|+.||.|++||+++++.+..+...+...|.+++
T Consensus 218 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 297 (420)
T 3vl1_A 218 TFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLT 297 (420)
T ss_dssp EECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEE
T ss_pred EeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEE
Confidence 88642 23455666899999999999999999999999988888766558999999
Q ss_pred EcCCCC-EEEEEecCCcEEEEEcCCcee-eeEeec-CCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc-----
Q 010470 402 LSRSGN-IILTSGRDNLHNLFDIRSLEV-CGSLRA-TGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD----- 473 (510)
Q Consensus 402 ~~~~~~-~l~~~~~d~~i~i~d~~~~~~-~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~----- 473 (510)
|+|++. +|++++.||.|++||++++.. +..+.. +...+. .+ +.+++.+|++++.||.|++|++....
T Consensus 298 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~----~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~ 372 (420)
T 3vl1_A 298 VDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPIN----NV-YFAAGALFVSSGFDTSIKLDIISDPESERPA 372 (420)
T ss_dssp ECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEE----EE-EEETTEEEEEETTTEEEEEEEECCTTCCSCE
T ss_pred EeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCce----EE-EeCCCCEEEEecCCccEEEEeccCCCCCccc
Confidence 999999 999999999999999998643 566665 333332 24 55688999999999999999987732
Q ss_pred ----eeecccccCcCEEEEEEeCCCC---cEEEeeCCCeEEEcC
Q 010470 474 ----IVRTLKEHTAPVLSCSWSGLGK---PLASADKNGVVCVWT 510 (510)
Q Consensus 474 ----~~~~~~~~~~~v~~~~~~~~~~---~l~s~~~dg~i~iwd 510 (510)
....+..|.+.|.+++|+|++. .|++++.+|.+.+|+
T Consensus 373 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 373 IEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYN 416 (420)
T ss_dssp ECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred eeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence 2223456888999999999999 788888999999995
No 30
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=6e-42 Score=326.50 Aligned_cols=284 Identities=17% Similarity=0.293 Sum_probs=245.0
Q ss_pred eccccccceEEEEEecC----CCEEEEeeCCCeEEEEeCCCCcceecccc-----cccceeEEEEecC----CCEEEEEe
Q 010470 220 KINAHEGGCASILFEYN----SARLISGGQDKSIKLWDTNTGSLSSTLYG-----CLGSVLDLAITHD----NRSVIAAS 286 (510)
Q Consensus 220 ~~~~h~~~v~~~~~s~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~----~~~l~~~~ 286 (510)
...+|.++|++++|+|+ ...+++++.++.|++||+.++..+..+.. |...|++++|+|+ +.+|++++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 34589999999999984 45677777788999999998877666654 5578999999999 67999999
Q ss_pred CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee----eecCceeEEEEcCC
Q 010470 287 SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI----IFHSNCNALAFSMD 362 (510)
Q Consensus 287 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~i~~i~~~~~ 362 (510)
.||.|++||+.+++.+..+.+|...|.+++|+|.++.+|++++.||.|++||+.+++.+..+ .....+.+++|+|+
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence 99999999999999999999999999999999977899999999999999999999988887 23456999999999
Q ss_pred CCEEEEecCCCcEEEEECCCCceeeeecc----------------------------cccccEEEEEEcCCCCEEEEEec
Q 010470 363 GQTIFSGHIDGNLRLWDIQTGKLLSEVAA----------------------------HSLAAVTSISLSRSGNIILTSGR 414 (510)
Q Consensus 363 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------------------------~~~~~i~~i~~~~~~~~l~~~~~ 414 (510)
+.+|++++.||.|++||+++++....+.. +. ..|.+++|+ ++++++++.
T Consensus 173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~--~~~l~~~~~ 249 (366)
T 3k26_A 173 GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHR-NYVDCVRWL--GDLILSKSC 249 (366)
T ss_dssp SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCS-SCCCEEEEE--TTEEEEECS
T ss_pred CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCc-ceEEEEEEc--CCEEEEEec
Confidence 99999999999999999998765544332 44 889999998 789999999
Q ss_pred CCcEEEEEcCCcee--------------eeEeecCCCeeecCceeEEEcCC--CCEEEEEcCCCeEEEEeCCCcceee--
Q 010470 415 DNLHNLFDIRSLEV--------------CGSLRATGNRVASNWSRSCISPD--ESYVAAGSADGSVYIWSISKADIVR-- 476 (510)
Q Consensus 415 d~~i~i~d~~~~~~--------------~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~-- 476 (510)
|+.|++||+.++.. +..+..+...+. .++|+|+ +++|++|+.||.|++||+.++++..
T Consensus 250 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~----~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 325 (366)
T 3k26_A 250 ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIW----YMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAK 325 (366)
T ss_dssp SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSS----CCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCE
T ss_pred CCEEEEEeCCCccccccccccCCcchheeccccccCCcEE----EEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcccc
Confidence 99999999987643 555555554443 4888998 9999999999999999999886543
Q ss_pred --ccccc--CcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 477 --TLKEH--TAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 477 --~~~~~--~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
.+..| ..+|++++|+|++++|++++.||.|++||
T Consensus 326 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 326 CTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD 363 (366)
T ss_dssp EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence 66666 78999999999999999999999999996
No 31
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-41 Score=311.81 Aligned_cols=282 Identities=16% Similarity=0.321 Sum_probs=253.0
Q ss_pred CccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEE
Q 010470 214 PSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYV 293 (510)
Q Consensus 214 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 293 (510)
+......+.+|.+.|++++| |++.+|++|+.||.|++||+.++.....+..|...|.+++|+|++.++++++.||.|++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 44678889999999999999 99999999999999999999999988889999999999999999999999999999999
Q ss_pred EEcCCC---CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcC-CCCEEEE
Q 010470 294 WDVNSG---RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSM-DGQTIFS 368 (510)
Q Consensus 294 wd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~-~~~~l~~ 368 (510)
|++... +....+.+|...|.++.|. ++++++++.||.|++|| .+.....+..+ ..+.++++.| ++..+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EEeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 998764 5677888999999999993 57999999999999999 56677776655 5689999988 9999999
Q ss_pred ecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEE
Q 010470 369 GHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCI 448 (510)
Q Consensus 369 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (510)
++.||.|++|| .++....+...+...+.+++|+|++. +++++.||.|++||+++++.+..+..+...+. +++|
T Consensus 161 ~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~----~~~~ 233 (313)
T 3odt_A 161 ASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVY----CIKL 233 (313)
T ss_dssp EETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEE----EEEE
T ss_pred EECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEE----EEEE
Confidence 99999999999 55666777764558999999999998 99999999999999999999999887776555 4999
Q ss_pred cCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 449 SPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 449 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+|++ .|++++.||.|++||+.+++.+..+..|..+|.+++|+|++. +++++.||.|++||
T Consensus 234 ~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 234 LPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFS 293 (313)
T ss_dssp CTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred ecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence 9999 588999999999999999999999999999999999999998 77899999999996
No 32
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.4e-41 Score=323.26 Aligned_cols=283 Identities=14% Similarity=0.203 Sum_probs=246.4
Q ss_pred ccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc--ceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 010470 221 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS--LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS 298 (510)
Q Consensus 221 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 298 (510)
+..|.++|++++|+|+|++|++|+.||.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 44599999999999999999999999999999999887 7888889999999999999999999999999999999988
Q ss_pred CCeeEe--ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE---eeee-e-ecCceeEEEEcCCCCEEEEecC
Q 010470 299 GRVRHT--LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC---VNTI-I-FHSNCNALAFSMDGQTIFSGHI 371 (510)
Q Consensus 299 ~~~~~~--~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~-~-~~~~i~~i~~~~~~~~l~~~~~ 371 (510)
++.... +..|...|.+++|+| ++.+|++++.||.|++||+..+.. ...+ . ....+.+++|+|++.+|++|+.
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 162 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 162 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred CeeeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence 875444 467899999999999 789999999999999999987752 2232 2 2356999999999999999999
Q ss_pred CCcEEEEECC------------------CCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEee
Q 010470 372 DGNLRLWDIQ------------------TGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLR 433 (510)
Q Consensus 372 dg~i~i~d~~------------------~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 433 (510)
||.|++||++ .++.+..+..+. ..+.+++|+|++.+|++++.|+.|++||+++++.+..+.
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 241 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC-GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA 241 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS-SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCC-CeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc
Confidence 9999999953 567777777665 899999999999999999999999999999999998888
Q ss_pred cCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC--cce--------------------------------e----
Q 010470 434 ATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK--ADI--------------------------------V---- 475 (510)
Q Consensus 434 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~~--------------------------------~---- 475 (510)
.+...+. .++|+|++.+|++| .||.|++|++.+ +.. .
T Consensus 242 ~~~~~v~----~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (372)
T 1k8k_C 242 SETLPLL----AVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAA 316 (372)
T ss_dssp CSSCCEE----EEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-------
T ss_pred cCCCCeE----EEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcc
Confidence 7765544 49999999999988 899999999987 420 0
Q ss_pred --ecc-cccCcCEEEEEEe-CCC---CcEEEeeCCCeEEEcC
Q 010470 476 --RTL-KEHTAPVLSCSWS-GLG---KPLASADKNGVVCVWT 510 (510)
Q Consensus 476 --~~~-~~~~~~v~~~~~~-~~~---~~l~s~~~dg~i~iwd 510 (510)
..+ .+|..+|++++|+ ++| .+|++|+.||.|++||
T Consensus 317 ~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 317 AGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp --CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred ccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 233 4799999999976 666 8999999999999996
No 33
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6e-41 Score=315.95 Aligned_cols=267 Identities=27% Similarity=0.430 Sum_probs=239.2
Q ss_pred HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc----ceec
Q 010470 187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS----LSST 262 (510)
Q Consensus 187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~----~~~~ 262 (510)
..+++++.||.+++|+... ......+..|.+.|.+++|+|+|++|++|+.|+.|++|++.++. ....
T Consensus 68 ~~l~s~s~Dg~v~iWd~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~ 138 (340)
T 1got_B 68 RLLLSASQDGKLIIWDSYT---------TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE 138 (340)
T ss_dssp SEEEEEETTTEEEEEETTT---------CCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEE
T ss_pred CEEEEEeCCCcEEEEECCC---------CCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEE
Confidence 3577888999999998443 34567788999999999999999999999999999999998653 4556
Q ss_pred ccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 010470 263 LYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG 342 (510)
Q Consensus 263 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~ 342 (510)
+.+|.+.|.++.|++++. +++++.|+.|++||+.+++.+..+.+|...|.+++|+| ++.++++|+.||.|++||++++
T Consensus 139 ~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~ 216 (340)
T 1got_B 139 LAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREG 216 (340)
T ss_dssp EECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC
T ss_pred ecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCC
Confidence 789999999999998875 89999999999999999999999999999999999999 8899999999999999999999
Q ss_pred eEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccc-cccEEEEEEcCCCCEEEEEecCCcEEE
Q 010470 343 YCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS-LAAVTSISLSRSGNIILTSGRDNLHNL 420 (510)
Q Consensus 343 ~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~~i~i 420 (510)
.++..+..+ ..|++++|+|++++|++|+.||.|++||+++++.+..+.... ...|.+++|+|+|.+|++|+.|+.|++
T Consensus 217 ~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~v 296 (340)
T 1got_B 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296 (340)
T ss_dssp SEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEE
Confidence 998888766 459999999999999999999999999999988877665332 247999999999999999999999999
Q ss_pred EEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEe
Q 010470 421 FDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWS 468 (510)
Q Consensus 421 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd 468 (510)
||+.++.....+.+|...+.+ ++|+|+|.+|++|+.||.|+|||
T Consensus 297 wd~~~~~~~~~~~~h~~~v~~----~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 297 WDALKADRAGVLAGHDNRVSC----LGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EETTTCCEEEEEECCSSCEEE----EEECTTSSCEEEEETTSCEEEEC
T ss_pred EEcccCcEeeEeecCCCcEEE----EEEcCCCCEEEEEcCCccEEecC
Confidence 999999999888888776654 99999999999999999999997
No 34
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.2e-41 Score=323.42 Aligned_cols=290 Identities=18% Similarity=0.296 Sum_probs=245.1
Q ss_pred CccceeeccccccceEEEEEecCCCEE-EEeeC---CCeEEEEeCCCCcceecc-cccccceeEEEEecC---CCEEEEE
Q 010470 214 PSTCKHKINAHEGGCASILFEYNSARL-ISGGQ---DKSIKLWDTNTGSLSSTL-YGCLGSVLDLAITHD---NRSVIAA 285 (510)
Q Consensus 214 ~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~---dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~---~~~l~~~ 285 (510)
|....+.+.+|.+.|.+++|+|++..+ ++|+. ||.|++||+.+++..... .+|...|.+++|+|+ +.+|+++
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 86 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATG 86 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEE
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEe
Confidence 344556678999999999999999655 55655 899999999988765443 378999999999999 6999999
Q ss_pred eCCCeEEEEEcCCCC-eeEeecCCCCceEEEEE------ecCCCCEEEEEeCCCcEEEEECCCCe-Eeeeeeec-----C
Q 010470 286 SSSNNLYVWDVNSGR-VRHTLTGHTDKVCAVDV------SKISSRHVVSAAYDRTLKVWDLHKGY-CVNTIIFH-----S 352 (510)
Q Consensus 286 ~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~i~~------~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~-----~ 352 (510)
+.||.|++||+.+++ ....+.+|...|.++.| +| ++.+|++++.||.|++||+.++. .+..+..+ .
T Consensus 87 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (357)
T 3i2n_A 87 DFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKR 165 (357)
T ss_dssp ETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCC
T ss_pred cCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCC
Confidence 999999999999988 88999999999999966 45 78899999999999999999886 56666543 2
Q ss_pred ceeEEE----EcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcC---CCCEEEEEecCCcEEEEEcCC
Q 010470 353 NCNALA----FSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSR---SGNIILTSGRDNLHNLFDIRS 425 (510)
Q Consensus 353 ~i~~i~----~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~---~~~~l~~~~~d~~i~i~d~~~ 425 (510)
.+.+++ |+|++.++++++.||.|++||+++++...... +. ..|.+++|+| ++.++++++.||.|++||+++
T Consensus 166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~-~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 243 (357)
T 3i2n_A 166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN-IK-NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT 243 (357)
T ss_dssp CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE-CS-SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC-CC-CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence 578888 78899999999999999999999988755433 33 7999999999 999999999999999999998
Q ss_pred ceeeeEee-----cCCCeeecCceeEEEcCCCC-EEEEEcCCCeEEEEeCCCc-------------------ceeecccc
Q 010470 426 LEVCGSLR-----ATGNRVASNWSRSCISPDES-YVAAGSADGSVYIWSISKA-------------------DIVRTLKE 480 (510)
Q Consensus 426 ~~~~~~~~-----~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~-------------------~~~~~~~~ 480 (510)
+.....+. .+... +..++|+|++. +|++|+.||.|++||+.++ +.+..+.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (357)
T 3i2n_A 244 QHPTKGFASVSEKAHKST----VWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL 319 (357)
T ss_dssp EETTTEEEEEEEECCSSC----EEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEEC
T ss_pred CCcccceeeeccCCCcCC----EEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecccc
Confidence 76655544 45444 44599999999 8999999999999998754 35667788
Q ss_pred cCcCEEEEEEeCCCCcEE-EeeCCCeEEEcC
Q 010470 481 HTAPVLSCSWSGLGKPLA-SADKNGVVCVWT 510 (510)
Q Consensus 481 ~~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd 510 (510)
|..+|++++|+|++++|+ +++.||.|++||
T Consensus 320 ~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 320 STQPISSLDWSPDKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp CSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred CCCCeeEEEEcCCCCeEEEEecCCCcEEEEE
Confidence 999999999999999998 899999999996
No 35
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.4e-41 Score=315.38 Aligned_cols=247 Identities=17% Similarity=0.218 Sum_probs=212.7
Q ss_pred ccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceec----ccccccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470 221 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSST----LYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV 296 (510)
Q Consensus 221 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 296 (510)
...|..+|.+++|+|++ .|++|+.||+|+|||+.+++.+.. ..+|.+.|++++|+|++++|++|+.|+.|++||+
T Consensus 78 ~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~ 156 (344)
T 4gqb_B 78 GVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL 156 (344)
T ss_dssp EEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 34567889999999985 788999999999999998876543 3489999999999999999999999999999999
Q ss_pred CCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec---CceeEEEEcC-CCCEEEEecCC
Q 010470 297 NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH---SNCNALAFSM-DGQTIFSGHID 372 (510)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~i~~~~-~~~~l~~~~~d 372 (510)
.+++++..+.+|...|.+++|+|.+..+|++++.||+|++||++++++...+... ..+.+++|+| ++.+|++|+.|
T Consensus 157 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d 236 (344)
T 4gqb_B 157 AQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN 236 (344)
T ss_dssp TTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT
T ss_pred CCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccC
Confidence 9999999999999999999999966678999999999999999999888777543 3488999999 56788999999
Q ss_pred CcEEEEECCCCceeeeecccccccEEEEEEcCCC-CEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCC
Q 010470 373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSG-NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD 451 (510)
Q Consensus 373 g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 451 (510)
|.|++||+++++.+..+..|. ..|++++|+|++ ++|++++.|+.|+|||+.+++.. .+.+|...+ .+++|+|+
T Consensus 237 g~v~~wd~~~~~~~~~~~~h~-~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V----~~v~~sp~ 310 (344)
T 4gqb_B 237 GTVSLVDTKSTSCVLSSAVHS-QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFV----RDATWSPL 310 (344)
T ss_dssp SEEEEEESCC--CCEEEECCS-SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCE----EEEEECSS
T ss_pred CcEEEEECCCCcEEEEEcCCC-CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCE----EEEEEeCC
Confidence 999999999999999999887 899999999998 57999999999999999988765 345665554 45999999
Q ss_pred CC-EEEEEcCCCeEEEEeCCCcce
Q 010470 452 ES-YVAAGSADGSVYIWSISKADI 474 (510)
Q Consensus 452 ~~-~l~~~~~dg~i~iwd~~~~~~ 474 (510)
+. +|++|+.||+|++|++.+...
T Consensus 311 ~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 311 NHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp STTEEEEEETTSCEEEEECCC---
T ss_pred CCeEEEEEcCCCeEEEEECCCCCC
Confidence 86 577899999999999987543
No 36
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-41 Score=329.89 Aligned_cols=294 Identities=15% Similarity=0.267 Sum_probs=246.7
Q ss_pred ccceeec-cccccceEEEEEec-CCCEEEEeeCCCeEEEEeCCC---Cccee-cc-cccccceeEEEEecCCCEEEEEeC
Q 010470 215 STCKHKI-NAHEGGCASILFEY-NSARLISGGQDKSIKLWDTNT---GSLSS-TL-YGCLGSVLDLAITHDNRSVIAASS 287 (510)
Q Consensus 215 ~~~~~~~-~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~---~~~~~-~~-~~~~~~v~~~~~~~~~~~l~~~~~ 287 (510)
......+ .+|.+.|++++|+| ++.+|++|+.||.|+|||+.+ +.... .+ .+|...|.+++|+|++.+|++++.
T Consensus 52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 131 (437)
T 3gre_A 52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSK 131 (437)
T ss_dssp CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeC
Confidence 4566777 89999999999999 999999999999999999876 43211 22 268999999999999999999999
Q ss_pred CCeEEEEEcC---CCCeeEeecC------------CCCceEEEE--EecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee
Q 010470 288 SNNLYVWDVN---SGRVRHTLTG------------HTDKVCAVD--VSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF 350 (510)
Q Consensus 288 d~~i~iwd~~---~~~~~~~~~~------------~~~~v~~i~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 350 (510)
||.|++||+. +++....+.+ +...+.++. +++ ++.++++++.||.|++||+++++++..+..
T Consensus 132 dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 210 (437)
T 3gre_A 132 DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLERLQIIEN 210 (437)
T ss_dssp TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeEEEcc
Confidence 9999999994 5655444332 445566666 335 688999999999999999999999998876
Q ss_pred ---cCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcC----CCCEEEEEecCCcEEEEEc
Q 010470 351 ---HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSR----SGNIILTSGRDNLHNLFDI 423 (510)
Q Consensus 351 ---~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~----~~~~l~~~~~d~~i~i~d~ 423 (510)
...+.+++|+|++.+|++|+.||.|++||+++++.+..+...+..+|.+++|+| ++.+|++++.||.|++||+
T Consensus 211 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 290 (437)
T 3gre_A 211 SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF 290 (437)
T ss_dssp CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEET
T ss_pred CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEc
Confidence 367999999999999999999999999999999999888643337999996654 6779999999999999999
Q ss_pred CCceeeeEeecCCCe----------------------eecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccc-
Q 010470 424 RSLEVCGSLRATGNR----------------------VASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE- 480 (510)
Q Consensus 424 ~~~~~~~~~~~~~~~----------------------~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~- 480 (510)
++++....+..+... ....+.+++|+ ++++|++|+.||.|++||+.+++....+.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 369 (437)
T 3gre_A 291 VKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISP 369 (437)
T ss_dssp TTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC
T ss_pred CCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecc
Confidence 999988888755322 22346678999 789999999999999999999887766654
Q ss_pred ------------------------------------cCcCEEEEEEeCC--CCcEEEeeCCCeEEEcC
Q 010470 481 ------------------------------------HTAPVLSCSWSGL--GKPLASADKNGVVCVWT 510 (510)
Q Consensus 481 ------------------------------------~~~~v~~~~~~~~--~~~l~s~~~dg~i~iwd 510 (510)
|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 370 SRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 8899999999998 77999999999999996
No 37
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.1e-40 Score=309.02 Aligned_cols=246 Identities=15% Similarity=0.215 Sum_probs=220.7
Q ss_pred ceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEE
Q 010470 259 LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD 338 (510)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd 338 (510)
...++.+|.+.|.+++|+|++++|++++.||.|++||+.++..+..+..|..+|.++.|+| ++++|++|+.|+.|++||
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEE
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 4567889999999999999999999999999999999999999999999999999999999 889999999999999999
Q ss_pred CCCCeEeeeeeecC-ceeEEEEcCCCCEEEEecCCCcEEEEECCCCce-eeeecccccccEEEEEEcC-CCCEEEEEecC
Q 010470 339 LHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL-LSEVAAHSLAAVTSISLSR-SGNIILTSGRD 415 (510)
Q Consensus 339 ~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d 415 (510)
+.++.++..+..+. .|.+++|+|++.+|++|+.||.|++||++++.. ...+..|. ..|.+++|+| ++.+|++++.|
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~-~~v~~v~~~p~~~~~l~sgs~D 162 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE-HFVMCVAFNPKDPSTFASGCLD 162 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCC-SCEEEEEECTTCTTEEEEEETT
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccC-CcEEEEEECCCCCCEEEEEeCC
Confidence 99999998888764 599999999999999999999999999988744 44556665 8999999999 67899999999
Q ss_pred CcEEEEEcCCceeeeEeecCC-CeeecCceeEEEcC--CCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeC
Q 010470 416 NLHNLFDIRSLEVCGSLRATG-NRVASNWSRSCISP--DESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 492 (510)
Q Consensus 416 ~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 492 (510)
+.|++||+++......+.... .. +..+.++| ++.+|++|+.||+|++||+.+++++..+.+|...|.+++|+|
T Consensus 163 ~~v~iwd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p 238 (304)
T 2ynn_A 163 RTVKVWSLGQSTPNFTLTTGQERG----VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238 (304)
T ss_dssp SEEEEEETTCSSCSEEEECCCTTC----EEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS
T ss_pred CeEEEEECCCCCccceeccCCcCc----EEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECC
Confidence 999999998776655554322 22 23367765 788999999999999999999999999999999999999999
Q ss_pred CCCcEEEeeCCCeEEEcC
Q 010470 493 LGKPLASADKNGVVCVWT 510 (510)
Q Consensus 493 ~~~~l~s~~~dg~i~iwd 510 (510)
++++|++|+.||.|++||
T Consensus 239 ~~~~l~s~s~Dg~i~iWd 256 (304)
T 2ynn_A 239 TLPIIISGSEDGTLKIWN 256 (304)
T ss_dssp SSSEEEEEETTSCEEEEE
T ss_pred CCCEEEEEcCCCeEEEEE
Confidence 999999999999999996
No 38
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.1e-40 Score=309.15 Aligned_cols=278 Identities=23% Similarity=0.329 Sum_probs=240.2
Q ss_pred HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc
Q 010470 187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC 266 (510)
Q Consensus 187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 266 (510)
..+++++.|+.+++|+..... .....+...+.+|...|.+++|+|+|.+|++|+.|++|++||+.+++.+..+.+|
T Consensus 31 ~~l~s~s~D~~v~~W~~~~~~----~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h 106 (319)
T 3frx_A 31 NLLLSASRDKTLISWKLTGDD----QKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106 (319)
T ss_dssp TEEEEEETTSEEEEEEEEEET----TEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred cEEEEecCCccEEEecCCCCC----ccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccC
Confidence 457888999999999854311 1112356789999999999999999999999999999999999999999999999
Q ss_pred ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecC-----CCCEEEEEeCCCcEEEEECCC
Q 010470 267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKI-----SSRHVVSAAYDRTLKVWDLHK 341 (510)
Q Consensus 267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-----~~~~l~s~~~dg~i~iwd~~~ 341 (510)
...|.+++|+|++.+|++++.|+.|++||+. +..+..+.+|...|.++.+.|. ++..+++++.|+.|++||+.+
T Consensus 107 ~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 185 (319)
T 3frx_A 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185 (319)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc
Confidence 9999999999999999999999999999986 6678888999999999999984 234899999999999999999
Q ss_pred CeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEE
Q 010470 342 GYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNL 420 (510)
Q Consensus 342 ~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i 420 (510)
+.....+..+ ..+.+++|+|+|.+|++|+.||.|++||+.+++.+..+..+ ..+.+++|+|++.++++++.+ .+++
T Consensus 186 ~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~~~la~~~~~-~i~v 262 (319)
T 3frx_A 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNRYWLAAATAT-GIKV 262 (319)
T ss_dssp TEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC--SCEEEEEECSSSSEEEEEETT-EEEE
T ss_pred chhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CcEEEEEEcCCCCEEEEEcCC-CcEE
Confidence 9888887765 56999999999999999999999999999999998888765 689999999999999888755 5999
Q ss_pred EEcCCceeeeEeecCCC----eeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc
Q 010470 421 FDIRSLEVCGSLRATGN----RVASNWSRSCISPDESYVAAGSADGSVYIWSISKA 472 (510)
Q Consensus 421 ~d~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 472 (510)
|++........+..+.. .....+.+++|+|+|++|++|+.||.|+|||+.++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 263 FSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 99998777666654322 12234556999999999999999999999998764
No 39
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-40 Score=324.28 Aligned_cols=280 Identities=16% Similarity=0.278 Sum_probs=248.9
Q ss_pred cccccceEEEEEecCCC-EEEEeeCCCeEEEEeC----CCCc------ceecccc----------cccceeEEEEecCCC
Q 010470 222 NAHEGGCASILFEYNSA-RLISGGQDKSIKLWDT----NTGS------LSSTLYG----------CLGSVLDLAITHDNR 280 (510)
Q Consensus 222 ~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~----~~~~------~~~~~~~----------~~~~v~~~~~~~~~~ 280 (510)
..|.++|++++|+|+|. +|++|+.||.|++|++ .++. ....+.. |.+.|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 45669999999999999 9999999999999999 8877 3333333 678999999999999
Q ss_pred EEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc-------
Q 010470 281 SVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN------- 353 (510)
Q Consensus 281 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------- 353 (510)
+|++++.||.|++|| .+++....+..|...|.+++|+| ++.+|++++.||.|++||+.++..+..+..+..
T Consensus 122 ~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 199 (425)
T 1r5m_A 122 SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINA 199 (425)
T ss_dssp EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEEEEECCC---------
T ss_pred EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceee
Confidence 999999999999999 67888999999999999999999 888999999999999999999998888766543
Q ss_pred ---------eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC
Q 010470 354 ---------CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR 424 (510)
Q Consensus 354 ---------i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 424 (510)
+.+++|+|++ .+++++.+|.|++||+++++.+..+..+. ..|.+++|+|++++|++++.|+.|++||++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 277 (425)
T 1r5m_A 200 ENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHH-GPISVLEFNDTNKLLLSASDDGTLRIWHGG 277 (425)
T ss_dssp ------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCS-SCEEEEEEETTTTEEEEEETTSCEEEECSS
T ss_pred ccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCC-CceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 8899999875 57888999999999999999888888776 899999999999999999999999999999
Q ss_pred CceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCC
Q 010470 425 SLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNG 504 (510)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 504 (510)
+++....+..+...+. .++|+|++ ++++++.||.|++||+.+++.+..+..|..+|.+++|+|++++|++++.||
T Consensus 278 ~~~~~~~~~~~~~~i~----~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 352 (425)
T 1r5m_A 278 NGNSQNCFYGHSQSIV----SASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDG 352 (425)
T ss_dssp SBSCSEEECCCSSCEE----EEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTS
T ss_pred CCccceEecCCCccEE----EEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCC
Confidence 9988888876665554 49999999 999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcC
Q 010470 505 VVCVWT 510 (510)
Q Consensus 505 ~i~iwd 510 (510)
.|++||
T Consensus 353 ~i~i~~ 358 (425)
T 1r5m_A 353 QVNVYD 358 (425)
T ss_dssp CEEEEE
T ss_pred eEEEEE
Confidence 999996
No 40
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.2e-40 Score=310.98 Aligned_cols=269 Identities=21% Similarity=0.373 Sum_probs=238.9
Q ss_pred HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCC------cce
Q 010470 187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG------SLS 260 (510)
Q Consensus 187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~------~~~ 260 (510)
..+++++.|+.+++|+... ......+..|...|.+++|+|+|.+|++|+.|+.+++|++... ...
T Consensus 77 ~~l~s~s~Dg~v~vWd~~~---------~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~ 147 (354)
T 2pbi_B 77 RRIVSSSQDGKVIVWDSFT---------TNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKK 147 (354)
T ss_dssp SEEEEEETTSEEEEEETTT---------CCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGC
T ss_pred CEEEEEeCCCeEEEEECCC---------CCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccc
Confidence 4577889999999998432 3456677889999999999999999999999999999998643 234
Q ss_pred ecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecC-CCCEEEEEeCCCcEEEEEC
Q 010470 261 STLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKI-SSRHVVSAAYDRTLKVWDL 339 (510)
Q Consensus 261 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~s~~~dg~i~iwd~ 339 (510)
..+.+|...|.+++|+|++..|++++.|++|++||+.+++++..+.+|...|.++.|+|. ++++|++|+.||.|++||+
T Consensus 148 ~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~ 227 (354)
T 2pbi_B 148 KSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM 227 (354)
T ss_dssp EEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEET
T ss_pred eeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEEC
Confidence 556789999999999999999999999999999999999999999999999999999884 3589999999999999999
Q ss_pred CCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccc-cccEEEEEEcCCCCEEEEEecCCc
Q 010470 340 HKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS-LAAVTSISLSRSGNIILTSGRDNL 417 (510)
Q Consensus 340 ~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~~ 417 (510)
++++++..+..+ ..|++++|+|++.+|++|+.||.|++||++.++.+..+..+. ...+.+++|+|+|.+|++++.|+.
T Consensus 228 ~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~ 307 (354)
T 2pbi_B 228 RSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYT 307 (354)
T ss_dssp TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCc
Confidence 999999888766 459999999999999999999999999999988776665432 247899999999999999999999
Q ss_pred EEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEe
Q 010470 418 HNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWS 468 (510)
Q Consensus 418 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd 468 (510)
|++||+.++..+..+.+|...+.. ++|+|+|++|++|+.||+|+||+
T Consensus 308 i~vwd~~~~~~~~~l~~h~~~v~~----l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 308 INVWDVLKGSRVSILFGHENRVST----LRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEETTTCSEEEEECCCSSCEEE----EEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEECCCCceEEEEECCCCcEEE----EEECCCCCEEEEEcCCCCEEecC
Confidence 999999999988888877766554 99999999999999999999996
No 41
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.1e-40 Score=325.22 Aligned_cols=290 Identities=16% Similarity=0.237 Sum_probs=234.3
Q ss_pred ceeeccccccceEEEEEec-CCCEEEEeeCCCeEEEEeCCCCcc--eecccccccceeEEEEec-CCCEEEEEeCCCeEE
Q 010470 217 CKHKINAHEGGCASILFEY-NSARLISGGQDKSIKLWDTNTGSL--SSTLYGCLGSVLDLAITH-DNRSVIAASSSNNLY 292 (510)
Q Consensus 217 ~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~ 292 (510)
......+|...|+|++|+| ++++||+|+.||.|+|||+.++.. ...+.+|.+.|++++|+| ++.+|++++.||+|+
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 4456678999999999999 567999999999999999987654 345668999999999998 688999999999999
Q ss_pred EEEcCCCCeeEeecC--CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCC-EEEE
Q 010470 293 VWDVNSGRVRHTLTG--HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQ-TIFS 368 (510)
Q Consensus 293 iwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~-~l~~ 368 (510)
+||+.++........ +...+.+++|+| ++.+|++|+.||.|++||++. +.+..+..+ ..|.+++|+|++. +|++
T Consensus 191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s 268 (435)
T 4e54_B 191 LQDFKGNILRVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLAT 268 (435)
T ss_dssp EEETTSCEEEEEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEE
T ss_pred EeeccCCceeEEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEE
Confidence 999987654433333 345678999999 889999999999999999964 455555554 5699999999876 7789
Q ss_pred ecCCCcEEEEECCCCceeeee---cccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeec--Cc
Q 010470 369 GHIDGNLRLWDIQTGKLLSEV---AAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVAS--NW 443 (510)
Q Consensus 369 ~~~dg~i~i~d~~~~~~~~~~---~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~--~~ 443 (510)
|+.||.|++||+++++....+ ..|. ..|++++|+|+|.+|++++.||.|++||+.++.....+..+...... ..
T Consensus 269 ~s~d~~v~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 347 (435)
T 4e54_B 269 ASVDQTVKIWDLRQVRGKASFLYSLPHR-HPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTP 347 (435)
T ss_dssp EETTSBCCEEETTTCCSSSCCSBCCBCS-SCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCC
T ss_pred ecCcceeeEEecccccccceEEEeeecc-ccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccccccee
Confidence 999999999999887654433 2343 78999999999999999999999999999998877776655433221 12
Q ss_pred eeEEEcCCCCEEEEEc------------CCCeEEEEeCCCcceeeccc-ccCcCEEEE-EEeCCCCcEEEeeCCCeEEEc
Q 010470 444 SRSCISPDESYVAAGS------------ADGSVYIWSISKADIVRTLK-EHTAPVLSC-SWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 444 ~~~~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~-~~~~~~~~l~s~~~dg~i~iw 509 (510)
....|+|++.++++++ .++.|++||..+++.+..+. +|...|.++ +|+|+|.+|++|+ |+.|+||
T Consensus 348 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW 426 (435)
T 4e54_B 348 IKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIW 426 (435)
T ss_dssp CBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEEC
T ss_pred EEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEE
Confidence 2346777777776664 23579999999999888764 588888887 6999999999876 8899999
Q ss_pred C
Q 010470 510 T 510 (510)
Q Consensus 510 d 510 (510)
|
T Consensus 427 ~ 427 (435)
T 4e54_B 427 S 427 (435)
T ss_dssp C
T ss_pred E
Confidence 7
No 42
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.7e-42 Score=326.66 Aligned_cols=282 Identities=13% Similarity=0.131 Sum_probs=229.5
Q ss_pred ccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCC--cceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 010470 221 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG--SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS 298 (510)
Q Consensus 221 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 298 (510)
+..|.++|++++|+|+|++|++|+.||.|++||+.++ .....+.+|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 4457789999999999999999999999999999988 77888999999999999999999999999999999999998
Q ss_pred CC---eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE---eeeeee--cCceeEEEEcCCCCEEEEec
Q 010470 299 GR---VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC---VNTIIF--HSNCNALAFSMDGQTIFSGH 370 (510)
Q Consensus 299 ~~---~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~--~~~i~~i~~~~~~~~l~~~~ 370 (510)
+. ....+.+|...|.+++|+| ++.+|++++.|+.|++||+.++.. ...+.. ...+.+++|+|++++|++|+
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 165 (377)
T 3dwl_C 87 DGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC 165 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE
T ss_pred CCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe
Confidence 77 6777888999999999999 889999999999999999998763 555554 45699999999999999999
Q ss_pred CCCcEEEEECC------------------CCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCcee----
Q 010470 371 IDGNLRLWDIQ------------------TGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV---- 428 (510)
Q Consensus 371 ~dg~i~i~d~~------------------~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~---- 428 (510)
.||.|++||+. .++.+..+ .+. ..|.+++|+|++++|++++.||.|++||+.++..
T Consensus 166 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 243 (377)
T 3dwl_C 166 ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG-GWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA 243 (377)
T ss_dssp SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS-SSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEE
T ss_pred CCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC-ceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCccee
Confidence 99999999985 24455555 444 8899999999999999999999999999998876
Q ss_pred eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc--ee-------------------------------
Q 010470 429 CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD--IV------------------------------- 475 (510)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~------------------------------- 475 (510)
+..+..+...+. +++|+|+|++|++|+.++.+ +|+..... ..
T Consensus 244 ~~~~~~~~~~v~----~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (377)
T 3dwl_C 244 LITVKLSQLPLR----SLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFT 318 (377)
T ss_dssp CCCEECSSSCEE----EEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------
T ss_pred eEeecCCCCceE----EEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccc
Confidence 666766665554 49999999999999877755 66654211 00
Q ss_pred ---e----------------cccccCcCEEEEEEeCCCC----cEEEeeCCCeEEEcC
Q 010470 476 ---R----------------TLKEHTAPVLSCSWSGLGK----PLASADKNGVVCVWT 510 (510)
Q Consensus 476 ---~----------------~~~~~~~~v~~~~~~~~~~----~l~s~~~dg~i~iwd 510 (510)
. ....|.+.|+++++.+... .|+|||.||.|++||
T Consensus 319 ~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 319 ALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp ------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred cccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence 0 0112899999999776544 599999999999997
No 43
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.5e-40 Score=346.49 Aligned_cols=289 Identities=17% Similarity=0.238 Sum_probs=263.4
Q ss_pred cceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEE
Q 010470 216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD 295 (510)
Q Consensus 216 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 295 (510)
...+.+.+|.+.|++++|+|+|.+|++|+.||.|+|||+.++..+..+.+|.++|.+++|+|++++|++++.||.|++||
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC-eEeeeeeec-CceeEEEEcC-CCCEEEEecCC
Q 010470 296 VNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG-YCVNTIIFH-SNCNALAFSM-DGQTIFSGHID 372 (510)
Q Consensus 296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~-~~i~~i~~~~-~~~~l~~~~~d 372 (510)
+.+++.+..+.+|.+.|.+++|+| ++.+|++++.||.|++||+.++ .....+..+ ..+.+++|+| ++..|++++.|
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 162 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred CCCCcEEEEEecCCCCEEEEEEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC
Confidence 999999999999999999999999 8889999999999999999887 566666554 5699999999 88999999999
Q ss_pred CcEEEEECCCCceeeeecccccccEEEEEEcC--CCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcC
Q 010470 373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSR--SGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP 450 (510)
Q Consensus 373 g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 450 (510)
|.|++||+.++.....+..++...+.+++|+| ++.++++++.||.|++||+.++.....+..+...+. +++|+|
T Consensus 163 g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~----~~~~~~ 238 (814)
T 3mkq_A 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVS----FAVFHP 238 (814)
T ss_dssp SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEE----EEEECS
T ss_pred CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEE----EEEEcC
Confidence 99999999998888888777668899999999 999999999999999999999999888887766554 499999
Q ss_pred CCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCc-EEEeeCCCeEEEc
Q 010470 451 DESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKP-LASADKNGVVCVW 509 (510)
Q Consensus 451 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~iw 509 (510)
+|.+|++|+.||.|++||+.+++.+..+..|...+.+++|+|+|.. +++++.++.+.+|
T Consensus 239 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (814)
T 3mkq_A 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298 (814)
T ss_dssp SSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEE
Confidence 9999999999999999999999999999999999999999999874 3555556666666
No 44
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-41 Score=325.50 Aligned_cols=283 Identities=16% Similarity=0.218 Sum_probs=246.2
Q ss_pred cccceEEEEEecCCC-EEEEe----------eCCCeEEEEeCCCCcce--ecccccccceeEEEEecCCCEEEEEeCCCe
Q 010470 224 HEGGCASILFEYNSA-RLISG----------GQDKSIKLWDTNTGSLS--STLYGCLGSVLDLAITHDNRSVIAASSSNN 290 (510)
Q Consensus 224 h~~~v~~~~~s~~~~-~l~s~----------~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 290 (510)
+...|.+++|+|+|. +|++| +.||.|+|||+.++... .....|...|.+++|+|++.+|++++.||.
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCe
Confidence 335689999999987 99999 88999999999987632 222368899999999999999999999999
Q ss_pred EEEEEcCC----CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe------Eeeee----eecCceeE
Q 010470 291 LYVWDVNS----GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY------CVNTI----IFHSNCNA 356 (510)
Q Consensus 291 i~iwd~~~----~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~----~~~~~i~~ 356 (510)
|++||+.+ .+....+.+|...|.+++|+|.++.+|++++.||.|++||+.++. ....+ .....+.+
T Consensus 91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 170 (416)
T 2pm9_A 91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVIS 170 (416)
T ss_dssp EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCE
T ss_pred EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeE
Confidence 99999987 458888999999999999999548999999999999999999876 33322 23356999
Q ss_pred EEEcCC-CCEEEEecCCCcEEEEECCCCceeeeecccc-----cccEEEEEEcCCC-CEEEEEecCC---cEEEEEcCCc
Q 010470 357 LAFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS-----LAAVTSISLSRSG-NIILTSGRDN---LHNLFDIRSL 426 (510)
Q Consensus 357 i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~i~~i~~~~~~-~~l~~~~~d~---~i~i~d~~~~ 426 (510)
++|+|+ +.+|++++.||.|++||+++++.+..+..+. ...+.+++|+|++ .++++++.|+ .|++||++++
T Consensus 171 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~ 250 (416)
T 2pm9_A 171 LAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA 250 (416)
T ss_dssp EEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred EEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence 999998 7899999999999999999999988887763 4889999999997 6899999998 9999999986
Q ss_pred -eeeeEee-cCCCeeecCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCC-CcEEEeeC
Q 010470 427 -EVCGSLR-ATGNRVASNWSRSCISP-DESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLG-KPLASADK 502 (510)
Q Consensus 427 -~~~~~~~-~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~ 502 (510)
.....+. .+...+ .+++|+| ++.+|++++.||.|++||+.+++.+..+..|...|.+++|+|++ .+|++++.
T Consensus 251 ~~~~~~~~~~~~~~v----~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~ 326 (416)
T 2pm9_A 251 NTPLQTLNQGHQKGI----LSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASF 326 (416)
T ss_dssp TSCSBCCCSCCSSCE----EEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCS
T ss_pred CCCcEEeecCccCce----eEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEec
Confidence 5555555 554444 4599999 99999999999999999999999999999999999999999999 79999999
Q ss_pred CCeEEEcC
Q 010470 503 NGVVCVWT 510 (510)
Q Consensus 503 dg~i~iwd 510 (510)
||.|++||
T Consensus 327 d~~i~iw~ 334 (416)
T 2pm9_A 327 DNKIEVQT 334 (416)
T ss_dssp SSEEEEEE
T ss_pred CCcEEEEE
Confidence 99999996
No 45
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.6e-40 Score=316.55 Aligned_cols=278 Identities=25% Similarity=0.356 Sum_probs=238.7
Q ss_pred HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc-------c
Q 010470 187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS-------L 259 (510)
Q Consensus 187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-------~ 259 (510)
..+++++.|+.+++|+... ......+.+|...|.+++|+|+|++|++|+.|+.|++||+.+.. .
T Consensus 79 ~~l~s~s~D~~v~iWd~~~---------~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~ 149 (380)
T 3iz6_a 79 NWIVSASQDGRLIVWNALT---------SQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPV 149 (380)
T ss_dssp SCEEEEETTSEEEEEETTT---------TEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTT
T ss_pred CEEEEEeCCCeEEEEECCC---------CccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccc
Confidence 4577889999999998543 34677889999999999999999999999999999999986532 3
Q ss_pred eecccccccceeEEEEecCC-CEEEEEeCCCeEEEEEcCCCCeeEee-----cCCCCceEEEEEecCCCCEEEEEeCCCc
Q 010470 260 SSTLYGCLGSVLDLAITHDN-RSVIAASSSNNLYVWDVNSGRVRHTL-----TGHTDKVCAVDVSKISSRHVVSAAYDRT 333 (510)
Q Consensus 260 ~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~v~~i~~~~~~~~~l~s~~~dg~ 333 (510)
...+.+|.+.|.++.|+|++ ..|++|+.|++|++||+.+++.+..+ .+|...|.++.|++.++++|++|+.||.
T Consensus 150 ~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~ 229 (380)
T 3iz6_a 150 SRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTT 229 (380)
T ss_dssp CCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSC
T ss_pred eeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCe
Confidence 45678999999999999974 57999999999999999999988777 6799999999998878899999999999
Q ss_pred EEEEECC-CCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccccc------ccEEEEEEcCC
Q 010470 334 LKVWDLH-KGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL------AAVTSISLSRS 405 (510)
Q Consensus 334 i~iwd~~-~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~~i~~i~~~~~ 405 (510)
|++||++ .+..+..+..+ ..|++++|+|++.+|++|+.||.|++||++++..+..+..+.. ..+++++|+|+
T Consensus 230 v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 309 (380)
T 3iz6_a 230 VRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSIS 309 (380)
T ss_dssp EEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSS
T ss_pred EEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCC
Confidence 9999998 45667777655 5699999999999999999999999999999998877765321 24899999999
Q ss_pred CCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc
Q 010470 406 GNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD 473 (510)
Q Consensus 406 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 473 (510)
|.+|++|+.||.|++||+.+++....+..........+.+++|+|+|.+|++|+.||+|+||++...+
T Consensus 310 g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 310 GRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 99999999999999999999888777743333333455669999999999999999999999987654
No 46
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-41 Score=332.72 Aligned_cols=313 Identities=12% Similarity=0.094 Sum_probs=231.9
Q ss_pred hHHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecC------CCEEEEeeCCCeEEEEeCCCCcc
Q 010470 186 LEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYN------SARLISGGQDKSIKLWDTNTGSL 259 (510)
Q Consensus 186 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~------~~~l~s~~~dg~i~iwd~~~~~~ 259 (510)
...+++++.|+.+++|+.... ........++.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++..
T Consensus 173 ~~~laS~s~D~tI~iWd~~~~-----~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~ 247 (524)
T 2j04_B 173 LEMFDKEKHSSCIQIFKMNTS-----TLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNAT 247 (524)
T ss_dssp ---------CEEEEEEEEETT-----TCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSS
T ss_pred hhhhccCCCCceEEEEEccCC-----CCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcc
Confidence 345678899999999985331 1111223457788999999999997 57999999999999999987642
Q ss_pred -----------eecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC-eeEeecCCCCceEEE--EEecCCC-CE
Q 010470 260 -----------SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR-VRHTLTGHTDKVCAV--DVSKISS-RH 324 (510)
Q Consensus 260 -----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~i--~~~~~~~-~~ 324 (510)
...+.+|...|++++|+|++ .|++|+.||+|++||+.++. +...+.+|...|.++ .|+| ++ .+
T Consensus 248 ~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-~g~~~ 325 (524)
T 2j04_B 248 DVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-FEDTV 325 (524)
T ss_dssp SSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT-TSCCE
T ss_pred ccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC-CCCeE
Confidence 23567899999999999864 89999999999999998764 556788999999999 4555 55 89
Q ss_pred EEEEeCCCcEEEEECCCCeEeeeeeecC---ceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEE
Q 010470 325 VVSAAYDRTLKVWDLHKGYCVNTIIFHS---NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSIS 401 (510)
Q Consensus 325 l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~ 401 (510)
|++++.|++|++||++++++...+..+. .+.+++|+|++..+++++.|++|++||++++..+..+..|. ..|.+++
T Consensus 326 laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~-~~V~sva 404 (524)
T 2j04_B 326 VSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRE-TTITAIG 404 (524)
T ss_dssp EEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECS-SCEEEEE
T ss_pred EEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCC-CceEEEE
Confidence 9999999999999999887776665543 47899999999999999999999999999998888888776 8999999
Q ss_pred EcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCee-ecCceeEEEcCCCCEEEEEcCCCeEEEEeCC-Ccceeeccc
Q 010470 402 LSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRV-ASNWSRSCISPDESYVAAGSADGSVYIWSIS-KADIVRTLK 479 (510)
Q Consensus 402 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~ 479 (510)
|+|+|++|++|+.|++|++||+... ............ ...+..++|+|+|..+.. .. .+.+|+.. ++..+..+.
T Consensus 405 ~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~--~~~~~~~~~~g~~~~~l~ 480 (524)
T 2j04_B 405 VSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI-DS--SYEVYPLTVNDVSKAKID 480 (524)
T ss_dssp CCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEE-CC--CCCCCC------------
T ss_pred eCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEc-cC--CceecccccCCcceeeec
Confidence 9999999999999999999998653 211111100000 011235788999985532 22 23444433 567788899
Q ss_pred ccCcCEEEEEEeCCCC---cEEEeeCCCeEEEcC
Q 010470 480 EHTAPVLSCSWSGLGK---PLASADKNGVVCVWT 510 (510)
Q Consensus 480 ~~~~~v~~~~~~~~~~---~l~s~~~dg~i~iwd 510 (510)
+|..+|.+++|+|++. .+++|+.||.|+||+
T Consensus 481 gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 481 AHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp -CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred CCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence 9999999999999965 899999999999995
No 47
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-39 Score=314.18 Aligned_cols=282 Identities=19% Similarity=0.302 Sum_probs=243.0
Q ss_pred eccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccc-cccceeEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 010470 220 KINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYG-CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS 298 (510)
Q Consensus 220 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 298 (510)
...+|...+.+.++++++..+++++.||.|++||+.++.....+.. |...|.+++|+|++.+|++++.||.|++||+.+
T Consensus 86 ~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 165 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES 165 (401)
T ss_dssp ECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred eCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC
Confidence 3447777655544444456788899999999999999988776665 789999999999999999999999999999999
Q ss_pred CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECC-CCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEE
Q 010470 299 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH-KGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLR 376 (510)
Q Consensus 299 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~ 376 (510)
++.+..+.+|...|.++.|+ +.++++++.||.|++||++ .+..+..+..+ ..+.+++|+|++.+|++|+.||.|+
T Consensus 166 ~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~ 242 (401)
T 4aez_A 166 QTKLRTMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQ 242 (401)
T ss_dssp CCEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CeEEEEecCCCCceEEEEEC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEE
Confidence 99999999999999999994 4799999999999999998 45556666555 5699999999999999999999999
Q ss_pred EEECCCCceeeeecccccccEEEEEEcCCCC-EEEEEe--cCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCC
Q 010470 377 LWDIQTGKLLSEVAAHSLAAVTSISLSRSGN-IILTSG--RDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES 453 (510)
Q Consensus 377 i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 453 (510)
+||++++..+..+..+. ..|.+++|+|++. ++++++ .|+.|++||+.+++....+.... .+..++|+|++.
T Consensus 243 iwd~~~~~~~~~~~~~~-~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~-----~v~~~~~s~~~~ 316 (401)
T 4aez_A 243 IWDARSSIPKFTKTNHN-AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGS-----QVTSLIWSPHSK 316 (401)
T ss_dssp EEETTCSSEEEEECCCS-SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSS-----CEEEEEECSSSS
T ss_pred EccCCCCCccEEecCCc-ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCC-----cEEEEEECCCCC
Confidence 99999999988888776 8999999999775 555544 69999999999999888876432 345599999999
Q ss_pred EEEE--EcCCCeEEEEeCCCcceee--cccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 454 YVAA--GSADGSVYIWSISKADIVR--TLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 454 ~l~~--~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+|++ |+.||.|++||+.++.... .+.+|...|.+++|+|+|.+|++++.||.|++|+
T Consensus 317 ~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~ 377 (401)
T 4aez_A 317 EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR 377 (401)
T ss_dssp EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 9999 5589999999999865544 4678999999999999999999999999999996
No 48
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=6.7e-39 Score=311.22 Aligned_cols=273 Identities=21% Similarity=0.300 Sum_probs=235.6
Q ss_pred ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecc--cccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEe
Q 010470 227 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTL--YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT 304 (510)
Q Consensus 227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 304 (510)
.++.|+||++ ++|++|. |++|+|||..+++....+ .+|...|++++|+|+|++|++|+.||.|++||+.+++.+..
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 4788999975 4777776 899999999999886654 46788999999999999999999999999999999999999
Q ss_pred ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC-eEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCC
Q 010470 305 LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG-YCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQT 382 (510)
Q Consensus 305 ~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~ 382 (510)
+.+|...+.++.++ +.++++|+.|+.+++||.... ..+..+..+ ..+..+.++|++.++++++.||.+++||..+
T Consensus 185 ~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~ 261 (420)
T 4gga_A 185 MTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261 (420)
T ss_dssp ECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred EeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence 99999999998875 579999999999999998864 344555554 4589999999999999999999999999987
Q ss_pred Cce----eeeecccccccEEEEEEcCCCC-EEEE--EecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEE
Q 010470 383 GKL----LSEVAAHSLAAVTSISLSRSGN-IILT--SGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 455 (510)
Q Consensus 383 ~~~----~~~~~~~~~~~i~~i~~~~~~~-~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 455 (510)
++. +.....+. ..|.+++|+|.+. ++++ |+.|+.|++||+.++.....+..+... ..+.|+|+++.+
T Consensus 262 ~~~~~~~~~~~~~~~-~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v-----~~~~~~~~~~~l 335 (420)
T 4gga_A 262 GEGGWVPLQTFTQHQ-GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV-----CSILWSPHYKEL 335 (420)
T ss_dssp CSSCSCCSEEECCCS-SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCE-----EEEEEETTTTEE
T ss_pred ccccceeeeeecccC-CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccce-----eeeeecCCCCeE
Confidence 653 33444444 8999999999765 4444 457899999999999998888766543 347899999988
Q ss_pred EEEc--CCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 456 AAGS--ADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 456 ~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
++++ .||.|+|||+.+++++..+.+|.+.|++++|+|+|.+|+||+.||+|+|||
T Consensus 336 v~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 336 ISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392 (420)
T ss_dssp EEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred EEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 8754 789999999999999999999999999999999999999999999999997
No 49
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.4e-39 Score=311.46 Aligned_cols=293 Identities=20% Similarity=0.259 Sum_probs=246.4
Q ss_pred cceeeccccccceEEEEEec-CCCEEEEeeCCCeEEEEeCCCCcceeccc-------------ccccceeEEEEec-CCC
Q 010470 216 TCKHKINAHEGGCASILFEY-NSARLISGGQDKSIKLWDTNTGSLSSTLY-------------GCLGSVLDLAITH-DNR 280 (510)
Q Consensus 216 ~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~v~~~~~~~-~~~ 280 (510)
.....+.+|.++|++++|+| ++++|++|+.||.|++||+.++.....+. +|...|.+++|+| ++.
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence 35667788999999999999 99999999999999999999887655543 5999999999999 778
Q ss_pred EEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCC--CCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEE
Q 010470 281 SVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKIS--SRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNAL 357 (510)
Q Consensus 281 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i 357 (510)
+|++++.||.|++||+.+++....+. +...+.++.++|.. +.++++++.||.|++||+.++..+..+..+ ..+.++
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~ 192 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAV 192 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEE
T ss_pred EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEE
Confidence 99999999999999999998888877 77889999999843 348999999999999999999888888755 569999
Q ss_pred EEcCCCC-EEEEecCCCcEEEEECCCCc-eeeee---------------cccccccEEEEEEcCCCCEEEEEecCCcEEE
Q 010470 358 AFSMDGQ-TIFSGHIDGNLRLWDIQTGK-LLSEV---------------AAHSLAAVTSISLSRSGNIILTSGRDNLHNL 420 (510)
Q Consensus 358 ~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~---------------~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i 420 (510)
+|+|++. .+++|+.||.|++||++++. .+..+ ..+ ...|.+++|+|++.+|++++.||.|++
T Consensus 193 ~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~v 271 (408)
T 4a11_B 193 SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAH-NGKVNGLCFTSDGLHLLTVGTDNRMRL 271 (408)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSC-SSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccc-cCceeEEEEcCCCCEEEEecCCCeEEE
Confidence 9999998 58899999999999998765 33333 233 378999999999999999999999999
Q ss_pred EEcCCceeeeEeecCCCeeec-CceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEE
Q 010470 421 FDIRSLEVCGSLRATGNRVAS-NWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLAS 499 (510)
Q Consensus 421 ~d~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 499 (510)
||+.+++....+......... ..........+..+++++.+|.|++||+.+++++..+.+|..+|++++|+|++++|++
T Consensus 272 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 351 (408)
T 4a11_B 272 WNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYS 351 (408)
T ss_dssp EETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred EECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEE
Confidence 999988765544332221111 1111223344566777788999999999999999999999999999999999999999
Q ss_pred eeCCCeEEEcC
Q 010470 500 ADKNGVVCVWT 510 (510)
Q Consensus 500 ~~~dg~i~iwd 510 (510)
++.||.|++||
T Consensus 352 ~~~dg~i~iw~ 362 (408)
T 4a11_B 352 GSRDCNILAWV 362 (408)
T ss_dssp EETTSCEEEEE
T ss_pred ECCCCeEEEEe
Confidence 99999999996
No 50
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=8.3e-39 Score=313.23 Aligned_cols=300 Identities=27% Similarity=0.513 Sum_probs=264.2
Q ss_pred HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc
Q 010470 187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC 266 (510)
Q Consensus 187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 266 (510)
..+++++.||.+++|+... ..+...+.+|.++|.+++|+ ++++++|+.||.|++||+.+++.+..+.+|
T Consensus 130 ~~l~sg~~dg~i~vwd~~~---------~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h 198 (445)
T 2ovr_B 130 NRIVSGSDDNTLKVWSAVT---------GKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGH 198 (445)
T ss_dssp TEEEEEETTSCEEEEETTT---------CCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CEEEEEECCCcEEEEECCC---------CcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCC
Confidence 3467788899999998543 34677889999999999998 569999999999999999999999999999
Q ss_pred ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEee
Q 010470 267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN 346 (510)
Q Consensus 267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 346 (510)
...|.++.|+ ++.+++++.||.|++||+.+++.+..+.+|...|.++.+ ++.++++++.||.|++||+.++.++.
T Consensus 199 ~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~ 273 (445)
T 2ovr_B 199 TSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLH 273 (445)
T ss_dssp SSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEEEE
T ss_pred CCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcEeE
Confidence 9999999995 678999999999999999999999999999999999998 56889999999999999999999998
Q ss_pred eeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC
Q 010470 347 TIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS 425 (510)
Q Consensus 347 ~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~ 425 (510)
.+..+ ..+.++.| ++.++++|+.||.|++||+++++.+..+..+. ..+.++.+ +++++++++.||.|++||+++
T Consensus 274 ~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~ 348 (445)
T 2ovr_B 274 TLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ-SLTSGMEL--KDNILVSGNADSTVKIWDIKT 348 (445)
T ss_dssp EECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCC-SCEEEEEE--ETTEEEEEETTSCEEEEETTT
T ss_pred EecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCc-ccEEEEEE--eCCEEEEEeCCCeEEEEECCC
Confidence 88765 45888888 78999999999999999999999999888776 78888777 467999999999999999999
Q ss_pred ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecc-----cccCcCEEEEEEeCCCCcEEEe
Q 010470 426 LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTL-----KEHTAPVLSCSWSGLGKPLASA 500 (510)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~s~ 500 (510)
++....+..+.. ....+.+++| ++++|++|+.||.|++||+.+++.+..+ ..|.+.|.+++|+|++.+|++|
T Consensus 349 ~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~ 425 (445)
T 2ovr_B 349 GQCLQTLQGPNK-HQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG 425 (445)
T ss_dssp CCEEEEECSTTS-CSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEE
T ss_pred CcEEEEEccCCC-CCCCEEEEEE--CCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEc
Confidence 998888876321 1123344666 5789999999999999999999988877 4688899999999999999999
Q ss_pred eCCCe----EEEcC
Q 010470 501 DKNGV----VCVWT 510 (510)
Q Consensus 501 ~~dg~----i~iwd 510 (510)
+.||. |.+||
T Consensus 426 ~~dg~~~~~l~v~d 439 (445)
T 2ovr_B 426 SRNGTEETKLLVLD 439 (445)
T ss_dssp CSSSSSCCEEEEEE
T ss_pred ccCCCCccEEEEEE
Confidence 99997 99986
No 51
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.1e-38 Score=314.27 Aligned_cols=300 Identities=21% Similarity=0.381 Sum_probs=259.5
Q ss_pred HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc
Q 010470 187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC 266 (510)
Q Consensus 187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 266 (510)
..+++++.||.+++|+... .++...+.+|.++|++++|+|++ +|++|+.||+|++||+.+++.+..+.+|
T Consensus 133 ~~l~sgs~dg~i~vwd~~~---------~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h 202 (464)
T 3v7d_B 133 NYVITGADDKMIRVYDSIN---------KKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGH 202 (464)
T ss_dssp TEEEEEETTSCEEEEETTT---------TEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CEEEEEcCCCcEEEEECCC---------CcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCC
Confidence 4567788999999998543 34677889999999999999988 9999999999999999999999999999
Q ss_pred ccceeEEEEe--cCCCEEEEEeCCCeEEEEEcCCCCe-----------------------eEeecCCCCceEEEEEecCC
Q 010470 267 LGSVLDLAIT--HDNRSVIAASSSNNLYVWDVNSGRV-----------------------RHTLTGHTDKVCAVDVSKIS 321 (510)
Q Consensus 267 ~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~-----------------------~~~~~~~~~~v~~i~~~~~~ 321 (510)
.+.|.+++|+ +++.++++++.||.|++||+.++.. ...+.+|...|.++. + +
T Consensus 203 ~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~-~ 279 (464)
T 3v7d_B 203 NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--G-H 279 (464)
T ss_dssp SSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--E-E
T ss_pred CCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--C-C
Confidence 9999999998 5778999999999999999987652 456778999998874 4 6
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEE
Q 010470 322 SRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSI 400 (510)
Q Consensus 322 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i 400 (510)
+.++++++.||.|++||+.++.++..+..+ ..+.+++|+|+++++++|+.||.|++||+++++.+..+..|. ..|.++
T Consensus 280 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~-~~v~~~ 358 (464)
T 3v7d_B 280 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHT-ALVGLL 358 (464)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCS-SCEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CcEEEE
Confidence 789999999999999999999999888765 559999999999999999999999999999999999998877 899999
Q ss_pred EEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeec-cc
Q 010470 401 SLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRT-LK 479 (510)
Q Consensus 401 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~ 479 (510)
.|+ +.+|++++.||.|++||+.++......... .. ...++|+|++.+|++|+ ||.|++||+.+++.+.. +.
T Consensus 359 ~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~----~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~ 430 (464)
T 3v7d_B 359 RLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHT-NL----SAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANIL 430 (464)
T ss_dssp EEC--SSEEEEEETTSEEEEEETTTCCEEEEEECT-TC----CCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTT
T ss_pred EEc--CCEEEEEeCCCcEEEEECCCCceeeeecCC-CC----ccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhc
Confidence 997 589999999999999999987766555322 22 23378999999999998 89999999999999876 66
Q ss_pred ccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 480 EHTAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 480 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
.|..+|.+++|+ ++..+++++.||.+.+|
T Consensus 431 ~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 431 KDADQIWSVNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp TTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred cCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence 789999999997 34456667778776655
No 52
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.4e-39 Score=308.35 Aligned_cols=249 Identities=18% Similarity=0.237 Sum_probs=209.3
Q ss_pred eeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceec----ccccccceeEEEEecCCCEEEEEeCCCeEEE
Q 010470 218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSST----LYGCLGSVLDLAITHDNRSVIAASSSNNLYV 293 (510)
Q Consensus 218 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 293 (510)
.....+|.+.|++++|+|++. +++++.||+|+|||+.+++.... ..+|.+.|++++|+|++++|++++.|+.|++
T Consensus 87 ~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~i 165 (357)
T 4g56_B 87 CTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKV 165 (357)
T ss_dssp CSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred ecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 344567999999999999985 55678899999999988765432 3479999999999999999999999999999
Q ss_pred EEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec---CceeEEEEcCC-CCEEEEe
Q 010470 294 WDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH---SNCNALAFSMD-GQTIFSG 369 (510)
Q Consensus 294 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~i~~~~~-~~~l~~~ 369 (510)
||+.+++.+..+.+|...|.+++|+|.+..++++++.||.|++||++++++...+... ..+.+++|+|+ +.+|++|
T Consensus 166 wd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g 245 (357)
T 4g56_B 166 WDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACG 245 (357)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEE
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEe
Confidence 9999999999999999999999999966678999999999999999998877665433 45899999997 5688899
Q ss_pred cCCCcEEEEECCCCceeeeecccccccEEEEEEcCCC-CEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEE
Q 010470 370 HIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSG-NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCI 448 (510)
Q Consensus 370 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (510)
+.|+.|++||+++++.+..+..+. ..|++++|+|++ ++|++++.|+.|+|||+++++.+..+ .|... +.+++|
T Consensus 246 ~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~----V~~vaf 319 (357)
T 4g56_B 246 DETGNVSLVNIKNPDSAQTSAVHS-QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDF----VTGVAW 319 (357)
T ss_dssp ESSSCEEEEESSCGGGCEEECCCS-SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSC----EEEEEE
T ss_pred ecccceeEEECCCCcEeEEEeccc-eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCC----EEEEEE
Confidence 999999999999999999988877 899999999987 57899999999999999999887655 44444 445999
Q ss_pred cC-CCCEEEEEcCCCeEEEEeCCCcc
Q 010470 449 SP-DESYVAAGSADGSVYIWSISKAD 473 (510)
Q Consensus 449 s~-~~~~l~~~~~dg~i~iwd~~~~~ 473 (510)
+| ++.+|++|+.||+|++|++.+..
T Consensus 320 sP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 320 SPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp CSSSTTEEEEEETTSCEEEEECC---
T ss_pred eCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 98 89999999999999999997643
No 53
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6.4e-40 Score=311.42 Aligned_cols=277 Identities=12% Similarity=0.115 Sum_probs=220.7
Q ss_pred cceEEEEEecCCCEEEEeeCCC-------eEEEEeCCCCcce----------ecccccccceeEEEEecCCCEEEEEe--
Q 010470 226 GGCASILFEYNSARLISGGQDK-------SIKLWDTNTGSLS----------STLYGCLGSVLDLAITHDNRSVIAAS-- 286 (510)
Q Consensus 226 ~~v~~~~~s~~~~~l~s~~~dg-------~i~iwd~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~l~~~~-- 286 (510)
-||+|++|+|||++|++||.+. .|++|++..+... ..+.+|...|.+++++ ++.+++|+
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence 4899999999999999997643 5999998765321 2356777888877664 56677664
Q ss_pred ---------CCCeEEEEEcCCCCeeE----ee-----cCCCCceEEEEEecCCCCEEE--EEeCCCcEEEEECCCCeEee
Q 010470 287 ---------SSNNLYVWDVNSGRVRH----TL-----TGHTDKVCAVDVSKISSRHVV--SAAYDRTLKVWDLHKGYCVN 346 (510)
Q Consensus 287 ---------~d~~i~iwd~~~~~~~~----~~-----~~~~~~v~~i~~~~~~~~~l~--s~~~dg~i~iwd~~~~~~~~ 346 (510)
.|+.+++|++.+..... .. ..+...+.+++|+| ++.+++ +++.|++|++||+.++.++.
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR-EGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT-TSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC-CCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 46789999987654211 11 23445689999999 777765 44578999999999999999
Q ss_pred eeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeee-cccccccEEEEEEcCCCCEEEEEecCC----cEEEE
Q 010470 347 TIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEV-AAHSLAAVTSISLSRSGNIILTSGRDN----LHNLF 421 (510)
Q Consensus 347 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~----~i~i~ 421 (510)
.+..+..|.+++|+|+|+++++++.+ .+.+|+..++..+... ...+...|.+++|+|++.++++++.++ .+.+|
T Consensus 172 ~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~ 250 (365)
T 4h5i_A 172 EIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKI 250 (365)
T ss_dssp EEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEE
T ss_pred EeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeec
Confidence 99888889999999999999999855 5677777777665433 333347899999999999999999887 68889
Q ss_pred EcCCceee----eEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeec-ccccCcCEEEEEEeCCCCc
Q 010470 422 DIRSLEVC----GSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRT-LKEHTAPVLSCSWSGLGKP 496 (510)
Q Consensus 422 d~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~ 496 (510)
++...... ..+..+... +.+++|+|+|++||+|+.||+|+|||+.+++++.. +.+|..+|++++|+|||++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~----V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~ 326 (365)
T 4h5i_A 251 SIKSGNTSVLRSKQVTNRFKG----ITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTY 326 (365)
T ss_dssp EEETTEEEEEEEEEEESSCSC----EEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCE
T ss_pred ccccceecceeeeeecCCCCC----eEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCE
Confidence 88765432 234444444 44599999999999999999999999999999887 4789999999999999999
Q ss_pred EEEeeCCCeEEEcC
Q 010470 497 LASADKNGVVCVWT 510 (510)
Q Consensus 497 l~s~~~dg~i~iwd 510 (510)
|++|+.|++|+|||
T Consensus 327 laS~S~D~tvrvw~ 340 (365)
T 4h5i_A 327 VASVSAANTIHIIK 340 (365)
T ss_dssp EEEEETTSEEEEEE
T ss_pred EEEEeCCCeEEEEE
Confidence 99999999999996
No 54
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.5e-39 Score=358.21 Aligned_cols=311 Identities=23% Similarity=0.342 Sum_probs=269.7
Q ss_pred hhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccccc
Q 010470 189 LAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLG 268 (510)
Q Consensus 189 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 268 (510)
+++++.||.+++|+... ......+.+|.+.|.+++|+|+|++|++|+.||.|+|||+.+++.+..+.+|..
T Consensus 630 l~s~~~d~~i~vw~~~~---------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~ 700 (1249)
T 3sfz_A 630 IASCGADKTLQVFKAET---------GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSE 700 (1249)
T ss_dssp EEEEETTSCEEEEETTT---------CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred EEEEeCCCeEEEEECCC---------CCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC
Confidence 44556677777777443 346778899999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEec--CCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEee
Q 010470 269 SVLDLAITH--DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN 346 (510)
Q Consensus 269 ~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 346 (510)
.|.+++|+| ++.++++++.||.|++||+.++++...+.+|.+.|.+++|+| ++.++++++.||.|++||+.++....
T Consensus 701 ~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~ 779 (1249)
T 3sfz_A 701 QVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERK 779 (1249)
T ss_dssp CEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEEEE
T ss_pred cEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCcccc
Confidence 999999999 556899999999999999999999999999999999999999 88999999999999999998775544
Q ss_pred eee--------------------------------------------------------ecCceeEEEEcCCCCEEEEec
Q 010470 347 TII--------------------------------------------------------FHSNCNALAFSMDGQTIFSGH 370 (510)
Q Consensus 347 ~~~--------------------------------------------------------~~~~i~~i~~~~~~~~l~~~~ 370 (510)
.+. ....+.+++|+|++.++++++
T Consensus 780 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 859 (1249)
T 3sfz_A 780 SINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL 859 (1249)
T ss_dssp EEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEEC
T ss_pred eecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEe
Confidence 331 123578999999999999999
Q ss_pred CCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceee---------------------
Q 010470 371 IDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVC--------------------- 429 (510)
Q Consensus 371 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--------------------- 429 (510)
.+|.|++||+.++..+..+..|. ..|.+++|+|+|.+|++++.||.|++||+.+....
T Consensus 860 ~dg~v~vwd~~~~~~~~~~~~h~-~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 938 (1249)
T 3sfz_A 860 SQYCVELWNIDSRLKVADCRGHL-SWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVL 938 (1249)
T ss_dssp SSSCEEEEETTTTEEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEE
T ss_pred CCCeEEEEEcCCCceeeecCCCc-cceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEE
Confidence 99999999999999999888887 89999999999999999999999999997532110
Q ss_pred --------eEeecCCC----eeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcE
Q 010470 430 --------GSLRATGN----RVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPL 497 (510)
Q Consensus 430 --------~~~~~~~~----~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 497 (510)
........ .....+.+++++|+|+++++|+.+|.|++|++.++.....+.+|...|.+++|+|+|++|
T Consensus 939 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 1018 (1249)
T 3sfz_A 939 AVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTL 1018 (1249)
T ss_dssp EEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCE
T ss_pred EecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEE
Confidence 00000000 011245678999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCeEEEcC
Q 010470 498 ASADKNGVVCVWT 510 (510)
Q Consensus 498 ~s~~~dg~i~iwd 510 (510)
++++.||.|++||
T Consensus 1019 ~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A 1019 ISSSEDSVIQVWN 1031 (1249)
T ss_dssp EEECSSSBEEEEE
T ss_pred EEEcCCCEEEEEE
Confidence 9999999999996
No 55
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5.5e-40 Score=319.24 Aligned_cols=278 Identities=18% Similarity=0.266 Sum_probs=240.3
Q ss_pred cceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee
Q 010470 226 GGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL 305 (510)
Q Consensus 226 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 305 (510)
..+++++|+|+|++|++|+.||.|++||+.++.....+..| ..+....|+|++++|++++.||.|++||+.+++....+
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 135 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID 135 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec
Confidence 34568999999999999999999999999988887777766 45556678999999999999999999999999998888
Q ss_pred cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCc
Q 010470 306 TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK 384 (510)
Q Consensus 306 ~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~ 384 (510)
.+|...|.+++|+| ++.+|++++.||.|++||+.+++.+..+..+ ..|.+++|+|++.+|++++.||.|++||+++++
T Consensus 136 ~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 214 (420)
T 3vl1_A 136 QAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT 214 (420)
T ss_dssp TSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred ccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence 89999999999999 7889999999999999999999988888765 569999999999999999999999999999999
Q ss_pred eeeeeccc--ccccEEE---------------------EEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeec-CCCeee
Q 010470 385 LLSEVAAH--SLAAVTS---------------------ISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRA-TGNRVA 440 (510)
Q Consensus 385 ~~~~~~~~--~~~~i~~---------------------i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~ 440 (510)
.+..+..+ +...+.+ ++|+|++++|++++.||.|++||++++.....+.. +..
T Consensus 215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--- 291 (420)
T 3vl1_A 215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTC--- 291 (420)
T ss_dssp EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSS---
T ss_pred eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCC---
Confidence 88887653 1234444 44578999999999999999999999887776644 333
Q ss_pred cCceeEEEcCCCC-EEEEEcCCCeEEEEeCCCcce-eecccc-cCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 441 SNWSRSCISPDES-YVAAGSADGSVYIWSISKADI-VRTLKE-HTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 441 ~~~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
.+.+++|+|++. +|++|+.||.|++||+.+++. +..+.. |..+|.++.| |++.+|++++.||.|++||
T Consensus 292 -~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 292 -SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp -CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEE
T ss_pred -CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEe
Confidence 345599999999 999999999999999998754 677766 6777888855 5778999999999999996
No 56
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=9.9e-40 Score=308.28 Aligned_cols=280 Identities=11% Similarity=0.107 Sum_probs=243.8
Q ss_pred eeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc---ceecccccccceeEEEEecCCC-EEEEEeCCCeEEEE
Q 010470 219 HKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS---LSSTLYGCLGSVLDLAITHDNR-SVIAASSSNNLYVW 294 (510)
Q Consensus 219 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iw 294 (510)
....+|.+.|++++|+|++.+|++|+.||.|++|++.++. ....+.+|...|.+++|+|+++ +|++++.||.|++|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence 3456899999999999999999999999999999998876 3455668999999999999999 99999999999999
Q ss_pred Ec-CCCCeeEeecC--CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC---------CeEeeeeeecCceeEEEEcCC
Q 010470 295 DV-NSGRVRHTLTG--HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK---------GYCVNTIIFHSNCNALAFSMD 362 (510)
Q Consensus 295 d~-~~~~~~~~~~~--~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~i~~i~~~~~ 362 (510)
|+ .+++. ..+.+ |...|.+++|+| +..+++++.||.|++||+++ ++++..+.....+.+++|+|+
T Consensus 85 d~~~~~~~-~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 85 DLIGSPSF-QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS 161 (342)
T ss_dssp CSSSSSSE-EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred EeccCCce-EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCC
Confidence 99 77655 67788 999999999998 78999999999999999987 777777776677999999988
Q ss_pred CCEEEEecCCCcEEEEECCC-Cce-eeeecccccccEEEEEEcC-CCCEEEEEecCCcEEEEEcCCc------eeeeEee
Q 010470 363 GQTIFSGHIDGNLRLWDIQT-GKL-LSEVAAHSLAAVTSISLSR-SGNIILTSGRDNLHNLFDIRSL------EVCGSLR 433 (510)
Q Consensus 363 ~~~l~~~~~dg~i~i~d~~~-~~~-~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~ 433 (510)
+ +++++.+|.|++||+++ +.. .......+...+.+++|+| ++.++++++.||.|++|++... .....+.
T Consensus 162 ~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 239 (342)
T 1yfq_A 162 R--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239 (342)
T ss_dssp E--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred c--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeee
Confidence 7 89999999999999988 543 2223333347899999999 9999999999999999999876 6667776
Q ss_pred cCCCe-----eecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeeccccc-CcCEEEEEEeCCCCcEEEeeCCCe
Q 010470 434 ATGNR-----VASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEH-TAPVLSCSWSGLGKPLASADKNGV 505 (510)
Q Consensus 434 ~~~~~-----~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~ 505 (510)
.+... ....+.+++|+|++++|++|+.||.|++||+.+++.+..+.+| ..+|.+++ |++.+|++++.||.
T Consensus 240 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred cccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 66441 1224566999999999999999999999999999999999998 99999999 99999999999998
No 57
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.6e-38 Score=313.06 Aligned_cols=280 Identities=22% Similarity=0.375 Sum_probs=244.1
Q ss_pred ceeeccccccce-EEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEE
Q 010470 217 CKHKINAHEGGC-ASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD 295 (510)
Q Consensus 217 ~~~~~~~h~~~v-~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 295 (510)
....+.+|.+.| .++.| ++++|++|+.||.|++||+.+++.+..+.+|.+.|++++|+|++ ++++|+.||.|++||
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd 189 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD 189 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEE
Confidence 456788999885 66655 56799999999999999999999999999999999999999988 999999999999999
Q ss_pred cCCCCeeEeecCCCCceEEEEEec-CCCCEEEEEeCCCcEEEEECCCCeEee-----------------------eeeec
Q 010470 296 VNSGRVRHTLTGHTDKVCAVDVSK-ISSRHVVSAAYDRTLKVWDLHKGYCVN-----------------------TIIFH 351 (510)
Q Consensus 296 ~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~-----------------------~~~~~ 351 (510)
+.+++.+..+.+|...|.+++|++ .++.++++++.||.|++||+.++.... .+..+
T Consensus 190 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (464)
T 3v7d_B 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 269 (464)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCC
T ss_pred CCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCc
Confidence 999999999999999999999996 266899999999999999998765332 22222
Q ss_pred -CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeee
Q 010470 352 -SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCG 430 (510)
Q Consensus 352 -~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 430 (510)
..+.+ +++++.++++|+.||.|++||+++++.+..+..+. ..|.+++|+|+++++++++.||.|++||+++++.+.
T Consensus 270 ~~~v~~--~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~ 346 (464)
T 3v7d_B 270 MASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT-DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY 346 (464)
T ss_dssp SSCEEE--EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS-SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred cceEEE--EcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE
Confidence 22444 46789999999999999999999999999998876 899999999999999999999999999999999999
Q ss_pred EeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 431 SLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
.+..+...+.. ++++ +.+|++|+.||.|++||+.++....... |...+..++|+|++.+|++|+ ||.|++||
T Consensus 347 ~~~~h~~~v~~----~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd 418 (464)
T 3v7d_B 347 TLQGHTALVGL----LRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYN 418 (464)
T ss_dssp EECCCSSCEEE----EEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred EEeCCCCcEEE----EEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence 99887766543 6665 6899999999999999999887665553 666788899999999999988 89999996
No 58
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6.9e-39 Score=301.68 Aligned_cols=278 Identities=20% Similarity=0.267 Sum_probs=241.9
Q ss_pred cccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe--
Q 010470 224 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV-- 301 (510)
Q Consensus 224 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-- 301 (510)
|.++|.+++|+|||++++++..++.+.+|............+|...|++++|+|+++++++++ ||.|++||+.++..
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 567899999999999999998888888877665554445558999999999999999999999 99999999987653
Q ss_pred -eEeec--CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe--Eeeeeeec-CceeEEEEcCCCCEEEEecCCCcE
Q 010470 302 -RHTLT--GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY--CVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNL 375 (510)
Q Consensus 302 -~~~~~--~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i 375 (510)
...+. .|...|.+++|+| ++.++++++.||.|++||+.++. ....+..+ ..+.+++|+|+++++++++.||.|
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 165 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeecccccCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 33333 7899999999999 88999999999999999999887 44444444 459999999999999999999999
Q ss_pred EEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEE
Q 010470 376 RLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 455 (510)
Q Consensus 376 ~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 455 (510)
++||+++++.+..+..+. ..+.+++|+|++++|++++.||.|++||+++++....+.... .+..++|+|++++|
T Consensus 166 ~~~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l 239 (337)
T 1gxr_A 166 AVWDLHNQTLVRQFQGHT-DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS-----QIFSLGYCPTGEWL 239 (337)
T ss_dssp EEEETTTTEEEEEECCCS-SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS-----CEEEEEECTTSSEE
T ss_pred EEEeCCCCceeeeeeccc-CceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCC-----ceEEEEECCCCCEE
Confidence 999999999998888776 899999999999999999999999999999998877765332 34458999999999
Q ss_pred EEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 456 AAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 456 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
++++.+|.|++||+.+++.. .+..|..+|.+++|+|++++|++++.||.|++||
T Consensus 240 ~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 240 AVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 99999999999999887754 5667999999999999999999999999999996
No 59
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=6.2e-39 Score=314.47 Aligned_cols=283 Identities=14% Similarity=0.245 Sum_probs=232.2
Q ss_pred ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc-----------ceecccccc------------cceeEEEEecCC
Q 010470 223 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS-----------LSSTLYGCL------------GSVLDLAITHDN 279 (510)
Q Consensus 223 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~ 279 (510)
.|.+.|++++|+|+|++|++|+.||.|+|||+.++. ....+.+|. ..|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 467899999999999999999999999999998876 467788898 889999999998
Q ss_pred --CEEEEEeCCCeEEEEEcCCCCee---------------------------------------Ee-ecCCCCceEEEEE
Q 010470 280 --RSVIAASSSNNLYVWDVNSGRVR---------------------------------------HT-LTGHTDKVCAVDV 317 (510)
Q Consensus 280 --~~l~~~~~d~~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~v~~i~~ 317 (510)
.+|++++.|+.|++||+.++... .. ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999999764331 12 3679999999999
Q ss_pred ecCCCCEEEEEeCCCcEEEEECCC-CeEeeee--------eecCceeEEEEcCCC-CEEEEecCCCcEEEEECCCCce--
Q 010470 318 SKISSRHVVSAAYDRTLKVWDLHK-GYCVNTI--------IFHSNCNALAFSMDG-QTIFSGHIDGNLRLWDIQTGKL-- 385 (510)
Q Consensus 318 ~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~--------~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~-- 385 (510)
+| ++.+|++| .||.|++||+.+ +.....+ .+...+.+++|+|++ .+|++|+.||.|++||+++++.
T Consensus 186 ~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 186 NS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp CT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred cC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 99 88899998 799999999984 4444432 223459999999998 9999999999999999999886
Q ss_pred --eeeeccccc-----------ccEEEEEEcCCCCEEEEEecCCcEEEEEcCC-ceeeeEeecCCCeee-----------
Q 010470 386 --LSEVAAHSL-----------AAVTSISLSRSGNIILTSGRDNLHNLFDIRS-LEVCGSLRATGNRVA----------- 440 (510)
Q Consensus 386 --~~~~~~~~~-----------~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~----------- 440 (510)
+..+..+.. ..|.+++|+|+|.+|++++. +.|++||+++ ++.+..+..+.....
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence 667776652 28999999999999999999 9999999997 887777776643221
Q ss_pred cCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecc--------------------------------cccCcCEEEE
Q 010470 441 SNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTL--------------------------------KEHTAPVLSC 488 (510)
Q Consensus 441 ~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------------------------------~~~~~~v~~~ 488 (510)
.....++|+|+|++|++|+.||.|++||+.+++.+... ..+...|.++
T Consensus 343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 422 (447)
T 3dw8_B 343 FDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHT 422 (447)
T ss_dssp GCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEE
T ss_pred ccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEE
Confidence 01223899999999999999999999999988764310 0234578999
Q ss_pred EEeCCCCcEEEeeCCCeEEEc
Q 010470 489 SWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 489 ~~~~~~~~l~s~~~dg~i~iw 509 (510)
+|+|++++|++++.++ +++|
T Consensus 423 ~~~p~~~~la~~~~~~-~~~~ 442 (447)
T 3dw8_B 423 AWHPKENIIAVATTNN-LYIF 442 (447)
T ss_dssp EECSSSSEEEEECSSC-EEEE
T ss_pred EECCCCCEEEEEecce-eeee
Confidence 9999999999998876 6665
No 60
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=6.4e-39 Score=305.73 Aligned_cols=295 Identities=14% Similarity=0.220 Sum_probs=248.7
Q ss_pred cCCCccceeeccccccceEEEEEecC---CCEEEEeeCCCeEEEEeCCC-Ccce-ecccccccceeEEEEecCCCEEEEE
Q 010470 211 STVPSTCKHKINAHEGGCASILFEYN---SARLISGGQDKSIKLWDTNT-GSLS-STLYGCLGSVLDLAITHDNRSVIAA 285 (510)
Q Consensus 211 ~~~~~~~~~~~~~h~~~v~~~~~s~~---~~~l~s~~~dg~i~iwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~ 285 (510)
...|......+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +..+ ..+.+|...|++++|+|++++|+++
T Consensus 25 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 104 (368)
T 3mmy_A 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTA 104 (368)
T ss_dssp SSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred CCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEE
Confidence 44677788899999999999999999 69999999999999999987 5444 6788999999999999999999999
Q ss_pred eCCCeEEEEEcCCCCeeEeecCCCCceEEEEE--ecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCC
Q 010470 286 SSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV--SKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDG 363 (510)
Q Consensus 286 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~ 363 (510)
+.||.|++||+.+++... +..|...|.++.| +| ++.+|++++.||.|++||+++++++..+..+..+.++.+. +
T Consensus 105 ~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~ 180 (368)
T 3mmy_A 105 SCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVI--Y 180 (368)
T ss_dssp ETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEE--T
T ss_pred cCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEec--C
Confidence 999999999999888766 5569999999999 66 7788999999999999999999999998888877777765 4
Q ss_pred CEEEEecCCCcEEEEECCCCceee-eecccccccEEEEEEcCCCCE----EEEEecCCcEEEEEcCCc---eeeeEeecC
Q 010470 364 QTIFSGHIDGNLRLWDIQTGKLLS-EVAAHSLAAVTSISLSRSGNI----ILTSGRDNLHNLFDIRSL---EVCGSLRAT 435 (510)
Q Consensus 364 ~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~i~~i~~~~~~~~----l~~~~~d~~i~i~d~~~~---~~~~~~~~~ 435 (510)
..+++++.++.+.+||++...... .........+.++.+.+++.. +++++.||.|++||++.. .....+..+
T Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 260 (368)
T 3mmy_A 181 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCH 260 (368)
T ss_dssp TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECS
T ss_pred CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeee
Confidence 578888899999999998765433 333333356677777666554 999999999999999876 445555544
Q ss_pred CCe--------eecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEE
Q 010470 436 GNR--------VASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVC 507 (510)
Q Consensus 436 ~~~--------~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 507 (510)
... ....+.+++|+|++++|++|+.||.|++||+.+++++..+..|..+|.+++|+|+|.+|++++.|+..+
T Consensus 261 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~ 340 (368)
T 3mmy_A 261 RSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSK 340 (368)
T ss_dssp EEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTT
T ss_pred ecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccc
Confidence 431 111466699999999999999999999999999999999999999999999999999999999987554
Q ss_pred Ec
Q 010470 508 VW 509 (510)
Q Consensus 508 iw 509 (510)
.|
T Consensus 341 ~~ 342 (368)
T 3mmy_A 341 GH 342 (368)
T ss_dssp CG
T ss_pred cc
Confidence 43
No 61
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8.6e-39 Score=352.23 Aligned_cols=290 Identities=23% Similarity=0.376 Sum_probs=262.9
Q ss_pred cceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEE
Q 010470 216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD 295 (510)
Q Consensus 216 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 295 (510)
.....+.+|.+.|++++|+|+|++|++|+.||.|++||+.++..+..+.+|.+.|.+++|+|+++++++++.||.|++||
T Consensus 606 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd 685 (1249)
T 3sfz_A 606 LSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD 685 (1249)
T ss_dssp CCSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence 34557889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeEeecCCCCceEEEEEecC-CCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCC
Q 010470 296 VNSGRVRHTLTGHTDKVCAVDVSKI-SSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDG 373 (510)
Q Consensus 296 ~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg 373 (510)
+.+++.+..+.+|...|.++.|+|. +..++++|+.||.|++||+.++.++..+..+ ..+.+++|+|+++++++|+.||
T Consensus 686 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg 765 (1249)
T 3sfz_A 686 SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADG 765 (1249)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSS
T ss_pred CCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCC
Confidence 9999999999999999999999985 3458899999999999999999998888766 4599999999999999999999
Q ss_pred cEEEEECCCCceeeeecccc------------cccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEee-cCCCeee
Q 010470 374 NLRLWDIQTGKLLSEVAAHS------------LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLR-ATGNRVA 440 (510)
Q Consensus 374 ~i~i~d~~~~~~~~~~~~~~------------~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~ 440 (510)
.|++||+.++.....+.... ...+.+++|+|+|..+++++ ++.+.+||+.++.....+. .+...
T Consensus 766 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~-- 842 (1249)
T 3sfz_A 766 TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHST-- 842 (1249)
T ss_dssp EEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSC--
T ss_pred eEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCCCCCc--
Confidence 99999999887766654321 13688999999999999987 6899999999988877765 33333
Q ss_pred cCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 441 SNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 441 ~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+..++|+|++.++++++.||.|++||+.++..+..+.+|.+.|.+++|+|+|.+|++++.||.|++||
T Consensus 843 --v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~ 910 (1249)
T 3sfz_A 843 --IQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910 (1249)
T ss_dssp --CCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred --eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 44589999999999999999999999999999999999999999999999999999999999999996
No 62
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-39 Score=339.22 Aligned_cols=188 Identities=13% Similarity=0.196 Sum_probs=162.0
Q ss_pred HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc
Q 010470 187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC 266 (510)
Q Consensus 187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 266 (510)
..+++++.||.+++|+... ..+... ..|.++|.+++|+| |++|++++.|++|+|||+.+++.+..+. |
T Consensus 30 ~~lAsgs~Dg~I~lw~~~~---------~~~~~~-~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~ 97 (902)
T 2oaj_A 30 NLLAIATVTGEVHIYGQQQ---------VEVVIK-LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-V 97 (902)
T ss_dssp TEEEEEETTSEEEEECSTT---------CEEEEE-CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-C
T ss_pred CEEEEEeCCCEEEEEeCCC---------cEEEEE-cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-C
Confidence 4578889999999998543 112222 34788999999999 8899999999999999999998887775 6
Q ss_pred ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCee-----------EeecCCCCceEEEEEecCCCCEEEEEeCCCcEE
Q 010470 267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR-----------HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLK 335 (510)
Q Consensus 267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----------~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~ 335 (510)
.+.|++++|+|+++++++|+.||.|++||+.+++.. ..+.+|.+.|.+++|+|.+...+++|+.||.|
T Consensus 98 ~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v- 176 (902)
T 2oaj_A 98 PGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL- 176 (902)
T ss_dssp SSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-
T ss_pred CCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-
Confidence 789999999999999999999999999999987753 23467999999999999656789999999999
Q ss_pred EEECCCCeEeeeeeec-------------------CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceee
Q 010470 336 VWDLHKGYCVNTIIFH-------------------SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLS 387 (510)
Q Consensus 336 iwd~~~~~~~~~~~~~-------------------~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 387 (510)
+||+++++++..+..+ ..|.+++|+|+|.+|++|+.||.|++||+++++.+.
T Consensus 177 lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 177 TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence 9999999988887655 459999999999999999999999999998876554
No 63
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=7.3e-38 Score=292.25 Aligned_cols=287 Identities=21% Similarity=0.275 Sum_probs=236.5
Q ss_pred CCccceeecccc--cc--ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecc--cccccceeEEEEecCCCEEEEEe
Q 010470 213 VPSTCKHKINAH--EG--GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTL--YGCLGSVLDLAITHDNRSVIAAS 286 (510)
Q Consensus 213 ~~~~~~~~~~~h--~~--~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~ 286 (510)
+|..+.+.|.+. .. .+++|+||+++ +|++|. |++|+|||+.+++.+..+ .+|...|++++|+|++++|++|+
T Consensus 9 ~p~~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs 86 (318)
T 4ggc_A 9 IPSLPDRILDAPEIRNDYYLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGT 86 (318)
T ss_dssp CCSSCSEEEECTTCCCCTTCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cCCCCCEEeeCCCCcccccceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEE
Confidence 444555555432 22 35789999886 777665 999999999999987765 46788899999999999999999
Q ss_pred CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe-Eeeeeeec-CceeEEEEcCCCC
Q 010470 287 SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY-CVNTIIFH-SNCNALAFSMDGQ 364 (510)
Q Consensus 287 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~-~~i~~i~~~~~~~ 364 (510)
.||.|++||+.+++.+..+.+|...+.++.+. +..+++++.++.+.+|+...+. .+..+..+ ..+..+.+++++.
T Consensus 87 ~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (318)
T 4ggc_A 87 SSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR 163 (318)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS
T ss_pred CCCcEEEeecCCceeEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC
Confidence 99999999999999999999999999887664 5799999999999999998654 34444444 5589999999999
Q ss_pred EEEEecCCCcEEEEECCCCcee----eeecccccccEEEEEEcCCCCEE---EEEecCCcEEEEEcCCceeeeEeecCCC
Q 010470 365 TIFSGHIDGNLRLWDIQTGKLL----SEVAAHSLAAVTSISLSRSGNII---LTSGRDNLHNLFDIRSLEVCGSLRATGN 437 (510)
Q Consensus 365 ~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~i~~i~~~~~~~~l---~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 437 (510)
++++++.||.|++||+++++.. .....+. +.|.++.++|++..+ ++++.++.|++||...............
T Consensus 164 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~ 242 (318)
T 4ggc_A 164 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ-GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ 242 (318)
T ss_dssp EEEEEETTSCEEEEESSCBTTBSCCSEEECCCC-SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSC
T ss_pred EEEEEecCcceeEEECCCCcccccceeeecccC-CceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceee
Confidence 9999999999999999886533 2233333 789999999977643 3567789999999998877666544433
Q ss_pred eeecCceeEEEcCCCCEEEEE--cCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 438 RVASNWSRSCISPDESYVAAG--SADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 438 ~~~~~~~~~~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+..++++|++..++++ +.||.|++||+.+++++..+.+|.++|++++|+|+|++|+||+.||+|+|||
T Consensus 243 -----v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 243 -----VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp -----EEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred -----eeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 2347899999987765 4799999999999999999999999999999999999999999999999997
No 64
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.6e-38 Score=299.92 Aligned_cols=280 Identities=21% Similarity=0.297 Sum_probs=224.5
Q ss_pred HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc
Q 010470 187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC 266 (510)
Q Consensus 187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 266 (510)
..+++++.|+.+++|+..... .......+...+.+|.+.|.+++|+|++.++++|+.|++|++||+.+++.+..+.+|
T Consensus 40 ~~l~sgs~D~~v~iWd~~~~~--~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h 117 (343)
T 2xzm_R 40 PVLISGSRDKTVMIWKLYEEE--QNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGH 117 (343)
T ss_dssp CEEEEEETTSCEEEEEECSSC--CSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECC
T ss_pred CEEEEEcCCCEEEEEECCcCC--cccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 357888999999999854311 001122356778999999999999999999999999999999999999999999999
Q ss_pred ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee---cCCCCceEEEEEecCC---------CCEEEEEeCCCcE
Q 010470 267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL---TGHTDKVCAVDVSKIS---------SRHVVSAAYDRTL 334 (510)
Q Consensus 267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~i~~~~~~---------~~~l~s~~~dg~i 334 (510)
...|.+++|+|++++|++++.|+.|++||+.. ...... .+|...|.++.|+|.. +.++++++.||.|
T Consensus 118 ~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i 196 (343)
T 2xzm_R 118 QSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRL 196 (343)
T ss_dssp CSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEE
T ss_pred CCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEE
Confidence 99999999999999999999999999999874 333333 3788999999999943 2689999999999
Q ss_pred EEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCC-CceeeeecccccccEEEEEEcCCCCEEEEE
Q 010470 335 KVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQT-GKLLSEVAAHSLAAVTSISLSRSGNIILTS 412 (510)
Q Consensus 335 ~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 412 (510)
++||. .+.....+..+ ..+.+++|+|+|++|++|+.||.|++||+.. ......+... ..|.+++|+|++.+++++
T Consensus 197 ~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~--~~v~~v~~sp~~~~la~~ 273 (343)
T 2xzm_R 197 KVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAG--STINQIAFNPKLQWVAVG 273 (343)
T ss_dssp EEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECS--SCEEEEEECSSSCEEEEE
T ss_pred EEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCC--CcEEEEEECCCCCEEEEE
Confidence 99995 45666666555 5699999999999999999999999999954 3444444332 579999999999887655
Q ss_pred ecCCcEEEEEcCCceeee--EeecCC-------CeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc
Q 010470 413 GRDNLHNLFDIRSLEVCG--SLRATG-------NRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD 473 (510)
Q Consensus 413 ~~d~~i~i~d~~~~~~~~--~~~~~~-------~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 473 (510)
.|+.|++||+.++.... .+.... ......+.+++|+|+|++|++|+.||.|++|++.++.
T Consensus 274 -~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 274 -TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp -ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred -CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 67889999998766543 322110 0122335669999999999999999999999987653
No 65
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=9e-39 Score=301.62 Aligned_cols=281 Identities=20% Similarity=0.248 Sum_probs=224.0
Q ss_pred HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc--ceeccc
Q 010470 187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS--LSSTLY 264 (510)
Q Consensus 187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~ 264 (510)
..+++++.|+.+++|+...... ........+|.+.|.+++|+|+|++|++|+.|+.|++|++.++. .+..+.
T Consensus 29 ~~las~~~D~~i~iw~~~~~~~------~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 102 (345)
T 3fm0_A 29 TLLASCGGDRRIRIWGTEGDSW------ICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE 102 (345)
T ss_dssp SCEEEEETTSCEEEEEEETTEE------EEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEEC
T ss_pred CEEEEEcCCCeEEEEEcCCCcc------eeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEcc
Confidence 4577889999999998543110 00112347899999999999999999999999999999988764 567888
Q ss_pred ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC---eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 010470 265 GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR---VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK 341 (510)
Q Consensus 265 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~ 341 (510)
+|...|.+++|+|++++|++++.|+.|++||+.++. ++..+.+|...|.+++|+| ++.+|++++.|+.|++||..+
T Consensus 103 ~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~ 181 (345)
T 3fm0_A 103 GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEE 181 (345)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEET
T ss_pred CCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999999999999999999998764 4567889999999999999 889999999999999999988
Q ss_pred CeE--eeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCC---------------ceeeeecccccccEEEEEEc
Q 010470 342 GYC--VNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTG---------------KLLSEVAAHSLAAVTSISLS 403 (510)
Q Consensus 342 ~~~--~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~---------------~~~~~~~~~~~~~i~~i~~~ 403 (510)
+.. ...+..+ ..|.+++|+|+|++|++|+.||.|++||...+ +.+..+...+...|.+++|+
T Consensus 182 ~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~ 261 (345)
T 3fm0_A 182 DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC 261 (345)
T ss_dssp TEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEEC
T ss_pred CCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEe
Confidence 753 3455544 56999999999999999999999999996432 22334444344789999999
Q ss_pred CCCCEEEEEecCCcEEEEEcCCcee----ee-----EeecCCCeeecCceeEEEcCCC-CEEEEEcCCCeEEEEeCCCcc
Q 010470 404 RSGNIILTSGRDNLHNLFDIRSLEV----CG-----SLRATGNRVASNWSRSCISPDE-SYVAAGSADGSVYIWSISKAD 473 (510)
Q Consensus 404 ~~~~~l~~~~~d~~i~i~d~~~~~~----~~-----~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~ 473 (510)
|++..|++++.|+.|++|+...... .. ....|.. .+.+++|+|++ .+|++|+.||+|++|++.+++
T Consensus 262 ~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~----~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 262 QLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQ----DVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp TTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSS----CEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred cCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccC----cEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 9999999999999999999875421 11 1123333 45569999998 599999999999999998877
Q ss_pred eeecc
Q 010470 474 IVRTL 478 (510)
Q Consensus 474 ~~~~~ 478 (510)
....+
T Consensus 338 ~~~~~ 342 (345)
T 3fm0_A 338 GLHHH 342 (345)
T ss_dssp -----
T ss_pred Ccccc
Confidence 65443
No 66
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=5e-38 Score=292.61 Aligned_cols=270 Identities=26% Similarity=0.488 Sum_probs=238.7
Q ss_pred HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc
Q 010470 187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC 266 (510)
Q Consensus 187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 266 (510)
..+++++.||.+++|+... ......+.+|...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|
T Consensus 36 ~~l~s~~~dg~i~iw~~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 106 (312)
T 4ery_A 36 EWLASSSADKLIKIWGAYD---------GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 106 (312)
T ss_dssp SEEEEEETTSCEEEEETTT---------CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CEEEEeeCCCeEEEEeCCC---------cccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCC
Confidence 3467778899999997433 3456778899999999999999999999999999999999999999999999
Q ss_pred ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEee
Q 010470 267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN 346 (510)
Q Consensus 267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 346 (510)
...|.+++|+|+++++++++.|+.|++||+.+++.+..+..|..+|.++.|+| ++.++++++.||.|++||+++++.+.
T Consensus 107 ~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~ 185 (312)
T 4ery_A 107 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLK 185 (312)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceee
Confidence 99999999999999999999999999999999999999999999999999999 88999999999999999999998887
Q ss_pred eeeec--CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccc--cEEEEEEcCCCCEEEEEecCCcEEEEE
Q 010470 347 TIIFH--SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLA--AVTSISLSRSGNIILTSGRDNLHNLFD 422 (510)
Q Consensus 347 ~~~~~--~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~i~~i~~~~~~~~l~~~~~d~~i~i~d 422 (510)
.+... ..+.+++|+|++++|++++.||.|++||+++++.+..+..+... .+......+++.+|++++.||.|++||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd 265 (312)
T 4ery_A 186 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265 (312)
T ss_dssp EECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEE
T ss_pred EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEE
Confidence 76543 45899999999999999999999999999999998888766521 223333446789999999999999999
Q ss_pred cCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEc--CCCeEEEEeCC
Q 010470 423 IRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGS--ADGSVYIWSIS 470 (510)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~dg~i~iwd~~ 470 (510)
+.+++.+..+.+|...+.. ++|+|++.++++++ .||.|++|+.+
T Consensus 266 ~~~~~~~~~~~~h~~~v~~----~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 266 LQTKEIVQKLQGHTDVVIS----TACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp TTTCCEEEEECCCSSCEEE----EEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred CCCchhhhhhhccCCcEEE----EeecCcCCceEEEEccCCccEEEecCC
Confidence 9999999999888766554 89999999999986 69999999864
No 67
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-38 Score=297.49 Aligned_cols=272 Identities=19% Similarity=0.292 Sum_probs=213.2
Q ss_pred HhhhhcCCceEEecccccccccccCCCccceeec-cc-cccceEEEEEecCCCEEEEeeCCCeEEEEeCCC-------Cc
Q 010470 188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKI-NA-HEGGCASILFEYNSARLISGGQDKSIKLWDTNT-------GS 258 (510)
Q Consensus 188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-------~~ 258 (510)
.+++++.|+.+++|+.... .......+ .+ |.+.|.+++|+|++++|++|+.|++|+|||+.. ..
T Consensus 26 ~las~~~D~~i~lw~~~~~-------~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~ 98 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYD-------DFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMD 98 (330)
T ss_dssp EEEEEESSSCEEEEECSSS-------CCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCE
T ss_pred EEEEEcCCCEEEEEEecCC-------CeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccce
Confidence 5778899999999985431 11233444 34 999999999999999999999999999999853 34
Q ss_pred ceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC----CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcE
Q 010470 259 LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG----RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTL 334 (510)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i 334 (510)
.+..+.+|...|.+++|+|++++|++++.|+.|++||+... +++..+.+|...|.++.|+| ++.+|++++.|++|
T Consensus 99 ~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i 177 (330)
T 2hes_X 99 LLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTV 177 (330)
T ss_dssp EEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCE
T ss_pred eEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeE
Confidence 56678899999999999999999999999999999999432 46678899999999999999 88999999999999
Q ss_pred EEEECCCC--eEeeeeeec-CceeEEEEcCC--CCEEEEecCCCcEEEEECCCC--------ceeeeecccccccEEEEE
Q 010470 335 KVWDLHKG--YCVNTIIFH-SNCNALAFSMD--GQTIFSGHIDGNLRLWDIQTG--------KLLSEVAAHSLAAVTSIS 401 (510)
Q Consensus 335 ~iwd~~~~--~~~~~~~~~-~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~~i~~i~ 401 (510)
++||..++ .++..+..+ ..|.+++|+|+ +..|++|+.||+|++||+..+ .....+...+...|.+++
T Consensus 178 ~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 257 (330)
T 2hes_X 178 RIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVA 257 (330)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEE
T ss_pred EEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEE
Confidence 99998776 566777655 46999999998 778999999999999998754 334444443448999999
Q ss_pred EcCCCCEEEEEecCCcEEEEEcCCcee--eeEe-ecCCCeeecCceeEEEcC--CCCEEEEEcCCCeEEEEeCCC
Q 010470 402 LSRSGNIILTSGRDNLHNLFDIRSLEV--CGSL-RATGNRVASNWSRSCISP--DESYVAAGSADGSVYIWSISK 471 (510)
Q Consensus 402 ~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~-~~~~~~~~~~~~~~~~s~--~~~~l~~~~~dg~i~iwd~~~ 471 (510)
|++++ +|++++.||.|++||..++.. .... ..+.. ..+.+++|+| ++++|++|+.||+|++|++..
T Consensus 258 ~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~---~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 258 WGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGV---YEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp ECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTT---SCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccccc---ceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 99765 899999999999999987642 2222 23332 1344589999 789999999999999999864
No 68
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4e-38 Score=321.58 Aligned_cols=305 Identities=20% Similarity=0.297 Sum_probs=253.5
Q ss_pred HhhhhcCCceEEecccccccccccCCCccceeecccccc---ceEEEEEecC-CCEEEEeeCCCeEEEEeCCCCcceecc
Q 010470 188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEG---GCASILFEYN-SARLISGGQDKSIKLWDTNTGSLSSTL 263 (510)
Q Consensus 188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~ 263 (510)
.+++++.|+.+++|+... ..+...+.+|.+ .|++++|+|+ +++|++++.||.|++||+.+++.+..+
T Consensus 175 ~l~~~~~d~~v~vwd~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 245 (615)
T 1pgu_A 175 RSMTVGDDGSVVFYQGPP---------FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI 245 (615)
T ss_dssp EEEEEETTTEEEEEETTT---------BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEEC
T ss_pred EEEEEeCCCcEEEEeCCC---------cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEe
Confidence 466778889999998432 456778889999 9999999999 999999999999999999999998888
Q ss_pred -c---ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCC----CCceEEEEEecCCCCEEEEEeCCCcEE
Q 010470 264 -Y---GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGH----TDKVCAVDVSKISSRHVVSAAYDRTLK 335 (510)
Q Consensus 264 -~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~v~~i~~~~~~~~~l~s~~~dg~i~ 335 (510)
. .|...|.+++|+ ++.+|++++.||.|++||+.+++.+..+..+ ...+.++.|. ++.++++++.||.|+
T Consensus 246 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~g~i~ 322 (615)
T 1pgu_A 246 EDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT--GNGRIISLSLDGTLN 322 (615)
T ss_dssp CBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE--ETTEEEEEETTSCEE
T ss_pred cccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC--CCCeEEEEECCCCEE
Confidence 6 899999999999 9999999999999999999999998888776 4677888884 688999999999999
Q ss_pred EEECCCCeEeeeeeecC-ceeE---------------------------------EEE----------------------
Q 010470 336 VWDLHKGYCVNTIIFHS-NCNA---------------------------------LAF---------------------- 359 (510)
Q Consensus 336 iwd~~~~~~~~~~~~~~-~i~~---------------------------------i~~---------------------- 359 (510)
+||+.++..+..+..+. .+.+ ++|
T Consensus 323 ~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~ 402 (615)
T 1pgu_A 323 FYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITK 402 (615)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEE
T ss_pred EEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEccc
Confidence 99998776665554321 1222 222
Q ss_pred ------------cCC--------------------------------------CCEEEEecC-CCcEEEEECCCCcee-e
Q 010470 360 ------------SMD--------------------------------------GQTIFSGHI-DGNLRLWDIQTGKLL-S 387 (510)
Q Consensus 360 ------------~~~--------------------------------------~~~l~~~~~-dg~i~i~d~~~~~~~-~ 387 (510)
+|+ +.++++++. ||.|++||+.++... .
T Consensus 403 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~ 482 (615)
T 1pgu_A 403 HEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFD 482 (615)
T ss_dssp EECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEE
T ss_pred CcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCcccccc
Confidence 111 445555555 666666666655443 3
Q ss_pred eecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeec-CCCeeecCceeEEEcC----------CCCEEE
Q 010470 388 EVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRA-TGNRVASNWSRSCISP----------DESYVA 456 (510)
Q Consensus 388 ~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~s~----------~~~~l~ 456 (510)
.+..+. ..|.+++|+|++++|++++.||.|++||+.+++.+..+.. +...+ .+++|+| ++++|+
T Consensus 483 ~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v----~~~~~sp~~~~~~~~~~~~~~l~ 557 (615)
T 1pgu_A 483 LKTPLR-AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKI----NAISWKPAEKGANEEEIEEDLVA 557 (615)
T ss_dssp CSSCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCE----EEEEECCCC------CCSCCEEE
T ss_pred ccCCcc-CceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCce----eEEEEcCccccccccccCCCEEE
Confidence 344444 7899999999999999999999999999999998887765 55444 4599999 999999
Q ss_pred EEcCCCeEEEEeCCCc-ceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 457 AGSADGSVYIWSISKA-DIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 457 ~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+|+.||.|++||+.++ +++..+.+|...|++++|+|++. |++++.||.|++|+
T Consensus 558 ~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 558 TGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 611 (615)
T ss_dssp EEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred EEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEe
Confidence 9999999999999998 78888999999999999999999 99999999999996
No 69
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.4e-38 Score=321.24 Aligned_cols=302 Identities=14% Similarity=0.240 Sum_probs=262.7
Q ss_pred CceEEecccccccccccCCCccceeeccccccc-eEEEEEec--CCCEEEEeeCCCeEEEEeCCCC--------cceecc
Q 010470 195 DGVVRRSEEGAEFFAESTVPSTCKHKINAHEGG-CASILFEY--NSARLISGGQDKSIKLWDTNTG--------SLSSTL 263 (510)
Q Consensus 195 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~--------~~~~~~ 263 (510)
++.+.+|+... ...+......+.+|.+. |++++|+| ++++|++|+.||.|++||+.++ .....+
T Consensus 38 ~~~v~v~~~~~-----~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~ 112 (615)
T 1pgu_A 38 GKSAFVRCLDD-----GDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF 112 (615)
T ss_dssp TTEEEEEECCS-----SCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEE
T ss_pred CCeEEEEECCC-----CCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchh
Confidence 66777777432 11222577889999999 99999999 9999999999999999999755 667778
Q ss_pred cccccceeEEEEecCCCEEEEEeCC----CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 010470 264 YGCLGSVLDLAITHDNRSVIAASSS----NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDL 339 (510)
Q Consensus 264 ~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~ 339 (510)
..|...|.+++|+|++++|++++.+ +.|++|| .++....+.+|...|.++.|+|.+...+++++.||.|++||+
T Consensus 113 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~ 190 (615)
T 1pgu_A 113 QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQG 190 (615)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEET
T ss_pred hcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeC
Confidence 8899999999999999999999987 6888887 677888999999999999999944448999999999999999
Q ss_pred CCCeEeeeeeecC----ceeEEEEcCC-CCEEEEecCCCcEEEEECCCCceeeee-c---ccccccEEEEEEcCCCCEEE
Q 010470 340 HKGYCVNTIIFHS----NCNALAFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEV-A---AHSLAAVTSISLSRSGNIIL 410 (510)
Q Consensus 340 ~~~~~~~~~~~~~----~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~-~---~~~~~~i~~i~~~~~~~~l~ 410 (510)
.+++.+..+..+. .+.+++|+|+ +++|++++.||.|++||+++++.+..+ . .+. ..|.+++|+ ++.+|+
T Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~v~~~~~~-~~~~l~ 268 (615)
T 1pgu_A 191 PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQ-GGIFALSWL-DSQKFA 268 (615)
T ss_dssp TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCC-SCEEEEEES-SSSEEE
T ss_pred CCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccC-CceEEEEEc-CCCEEE
Confidence 9999998888664 5999999999 999999999999999999999999888 4 444 899999999 999999
Q ss_pred EEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEE
Q 010470 411 TSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSW 490 (510)
Q Consensus 411 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 490 (510)
+++.|+.|++||+++++....+..+.......+..+.++ ++.++++++.||.|++||+.+++.+..+.+|..+|.+++|
T Consensus 269 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 347 (615)
T 1pgu_A 269 TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV 347 (615)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET
T ss_pred EEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe
Confidence 999999999999999999888887755444455556665 8999999999999999999999999999999999999998
Q ss_pred eCCCCcEEEeeCCCeEEEcC
Q 010470 491 SGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 491 ~~~~~~l~s~~~dg~i~iwd 510 (510)
|+ |++++.||.|++||
T Consensus 348 -~~---l~~~~~dg~i~~w~ 363 (615)
T 1pgu_A 348 -NP---LISGSYDGRIMEWS 363 (615)
T ss_dssp -TT---TEEEETTSCEEETT
T ss_pred -cC---cEEECCCCeEEEEE
Confidence 77 77777777777775
No 70
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=9.3e-39 Score=302.09 Aligned_cols=287 Identities=17% Similarity=0.240 Sum_probs=223.4
Q ss_pred eeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCC----cceecccccccceeEEEEec--CCCEEEEEeCCCeE
Q 010470 218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG----SLSSTLYGCLGSVLDLAITH--DNRSVIAASSSNNL 291 (510)
Q Consensus 218 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i 291 (510)
...+.+|.+.|++++|+|++++|++|+.||.|++||+.++ .....+.+|...|++++|+| ++.+|++++.||.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 3456899999999999999999999999999999999876 35667789999999999999 69999999999999
Q ss_pred EEEEcCCC---------CeeEeecCCCCceEEEEEecCC--CCEEEEEeCCCcEEEEECCCCeEeeeee-----------
Q 010470 292 YVWDVNSG---------RVRHTLTGHTDKVCAVDVSKIS--SRHVVSAAYDRTLKVWDLHKGYCVNTII----------- 349 (510)
Q Consensus 292 ~iwd~~~~---------~~~~~~~~~~~~v~~i~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------- 349 (510)
++||+.++ +....+..|...|.+++|+| + +.++++++.||.|++||++++..+..+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 162 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 162 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence 99999887 55778889999999999999 6 8899999999999999998876554432
Q ss_pred ---ecCceeEEEEcCC---CCEEEEecCCCcEEEEECCCCce--eeeecccccccEEEEEEcCCC----CEEEEEecCCc
Q 010470 350 ---FHSNCNALAFSMD---GQTIFSGHIDGNLRLWDIQTGKL--LSEVAAHSLAAVTSISLSRSG----NIILTSGRDNL 417 (510)
Q Consensus 350 ---~~~~i~~i~~~~~---~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~i~~~~~~----~~l~~~~~d~~ 417 (510)
....+.+++|+|+ +..+++++.++.+.+|+...+.. +..+..|. ..|.+++|+|++ ++|++++.||.
T Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~~~~~p~~~~~~~~l~s~~~dg~ 241 (351)
T 3f3f_A 163 PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHK-SLIRSISWAPSIGRWYQLIATGCKDGR 241 (351)
T ss_dssp CSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCC-SCEEEEEECCCSSCSSEEEEEEETTSC
T ss_pred cCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCC-cceeEEEECCCCCCcceEEEEEcCCCe
Confidence 2245899999997 99999999999998888877765 55565665 899999999998 89999999999
Q ss_pred EEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEE----cCCCeEEEEeCCCcceeecccccCcCEEEEEEeCC
Q 010470 418 HNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAG----SADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGL 493 (510)
Q Consensus 418 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 493 (510)
|++||++.+............... ...++....+..+ ...+.+.+|+....+.+..+.+|...|++++|+|+
T Consensus 242 i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 317 (351)
T 3f3f_A 242 IRIFKITEKLSPLASEESLTNSNM----FDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLT 317 (351)
T ss_dssp EEEEEEEECC-------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSS
T ss_pred EEEEeCCCCcCccccCCcccceec----cCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCC
Confidence 999999876443332222221111 2233333333333 34456777777778888999999999999999999
Q ss_pred CCcEEEeeCCCeEEEcC
Q 010470 494 GKPLASADKNGVVCVWT 510 (510)
Q Consensus 494 ~~~l~s~~~dg~i~iwd 510 (510)
+++|++++.||.|++||
T Consensus 318 ~~~l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 318 GTILSSAGDDGKVRLWK 334 (351)
T ss_dssp SCCEEEEETTSCEEEEE
T ss_pred CCEEEEecCCCcEEEEe
Confidence 99999999999999996
No 71
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=4.5e-38 Score=306.92 Aligned_cols=272 Identities=26% Similarity=0.487 Sum_probs=242.9
Q ss_pred eeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 010470 219 HKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS 298 (510)
Q Consensus 219 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 298 (510)
....+|..+|.|+.| ++++|++|+.||.|++||+.+++....+.+|.+.|.+++| +++++++|+.||.|++||+.+
T Consensus 127 ~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 127 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred ecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence 344567788999887 7899999999999999999999999999999999999998 788999999999999999999
Q ss_pred CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEe---eeeeec-CceeEEEEcCCCCEEEEecCCCc
Q 010470 299 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV---NTIIFH-SNCNALAFSMDGQTIFSGHIDGN 374 (510)
Q Consensus 299 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~ 374 (510)
++.+..+.+|...|.++.|++ ..+++|+.||.|++||+.++... ..+..+ ..+.++++ +++++++|+.||.
T Consensus 203 ~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~ 277 (435)
T 1p22_A 203 GEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRT 277 (435)
T ss_dssp CCEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSE
T ss_pred CcEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCe
Confidence 999999999999999999964 59999999999999999887655 333333 45888888 7899999999999
Q ss_pred EEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCE
Q 010470 375 LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESY 454 (510)
Q Consensus 375 i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 454 (510)
|++||+++++.+..+..+. ..+.++.+ ++.++++++.||.|++||++++..+..+..+...+.. +++ ++.+
T Consensus 278 i~vwd~~~~~~~~~~~~~~-~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~----~~~--~~~~ 348 (435)
T 1p22_A 278 IKVWNTSTCEFVRTLNGHK-RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC----IRF--DNKR 348 (435)
T ss_dssp EEEEETTTCCEEEEEECCS-SCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE----EEC--CSSE
T ss_pred EEEEECCcCcEEEEEcCCC-CcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEE----EEe--cCCE
Confidence 9999999999999998877 88999998 4789999999999999999999999998887766543 555 8999
Q ss_pred EEEEcCCCeEEEEeCCCcc---------eeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 455 VAAGSADGSVYIWSISKAD---------IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 455 l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
|++|+.||.|++||+.++. .+..+.+|.++|.+++| ++.+|++++.||.|++||
T Consensus 349 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd 411 (435)
T 1p22_A 349 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 411 (435)
T ss_dssp EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred EEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEE
Confidence 9999999999999998776 77888899999999999 778999999999999997
No 72
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=5e-38 Score=290.08 Aligned_cols=249 Identities=18% Similarity=0.273 Sum_probs=207.8
Q ss_pred eeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC--CcceecccccccceeEEEEecC--CCEEEEEeCCCeEEEE
Q 010470 219 HKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT--GSLSSTLYGCLGSVLDLAITHD--NRSVIAASSSNNLYVW 294 (510)
Q Consensus 219 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iw 294 (510)
..+.+|.+.|++++|+|+|++|++|+.|++|+|||+.+ .+.+.++.+|.++|.+++|+|+ +++|++|+.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 45789999999999999999999999999999999974 4667889999999999999864 8999999999999999
Q ss_pred EcCCCC--eeEeecCCCCceEEEEEecCC-CCEEEEEeCCCcEEEEECCCCeE--eeeeeec-CceeEEEEcCC------
Q 010470 295 DVNSGR--VRHTLTGHTDKVCAVDVSKIS-SRHVVSAAYDRTLKVWDLHKGYC--VNTIIFH-SNCNALAFSMD------ 362 (510)
Q Consensus 295 d~~~~~--~~~~~~~~~~~v~~i~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~-~~i~~i~~~~~------ 362 (510)
|+.+++ .+..+.+|...|.+++|+|.. +.+|++++.||.|++||++++.. ...+..+ ..+.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 998874 566778899999999999942 78999999999999999987632 2333333 46999999997
Q ss_pred -------CCEEEEecCCCcEEEEECCCCc----eeeeecccccccEEEEEEcCCC---CEEEEEecCCcEEEEEcCCcee
Q 010470 363 -------GQTIFSGHIDGNLRLWDIQTGK----LLSEVAAHSLAAVTSISLSRSG---NIILTSGRDNLHNLFDIRSLEV 428 (510)
Q Consensus 363 -------~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~i~~i~~~~~~---~~l~~~~~d~~i~i~d~~~~~~ 428 (510)
+++|++|+.||.|++||++++. ....+..|. ..|.+++|+|++ .+|++++.|+.|++||+.+...
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~-~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~ 241 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS-DWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG 241 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS-SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCC-CceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC
Confidence 5799999999999999998766 455666666 899999999985 8999999999999999986431
Q ss_pred ---eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470 429 ---CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS 470 (510)
Q Consensus 429 ---~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 470 (510)
...+. .......+..++|+|+|++|++++.||.|++|+..
T Consensus 242 ~~~~~~~~--~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 242 PWKKTLLK--EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CCEEEESS--SSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ccceeeee--cccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 11221 11122345569999999999999999999999976
No 73
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.8e-37 Score=303.76 Aligned_cols=275 Identities=25% Similarity=0.525 Sum_probs=246.1
Q ss_pred ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470 217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV 296 (510)
Q Consensus 217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 296 (510)
....+.+|.+.|.. +++++|++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+ ++++++++.||.|++||+
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~ 186 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNA 186 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEEC
Confidence 44678899987533 355568999999999999999999999999999999999999997 679999999999999999
Q ss_pred CCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcE
Q 010470 297 NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNL 375 (510)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i 375 (510)
.+++.+..+.+|...|.++.++ +..+++|+.||.|++||+.+++.+..+..+ ..+.++.+ ++.++++|+.||.|
T Consensus 187 ~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i 261 (445)
T 2ovr_B 187 ETGECIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMV 261 (445)
T ss_dssp TTTEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCE
T ss_pred CcCcEEEEECCCCCcEEEEEec---CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEE
Confidence 9999999999999999999995 467999999999999999999998888766 45888888 78899999999999
Q ss_pred EEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEE
Q 010470 376 RLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 455 (510)
Q Consensus 376 ~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 455 (510)
++||+++++.+..+..+. ..|.++.| ++.++++++.||.|++||+++++.+..+..+...+. +++++++++
T Consensus 262 ~iwd~~~~~~~~~~~~~~-~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~------~~~~~~~~l 332 (445)
T 2ovr_B 262 KVWDPETETCLHTLQGHT-NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS------GMELKDNIL 332 (445)
T ss_dssp EEEEGGGTEEEEEECCCS-SCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEE------EEEEETTEE
T ss_pred EEEECCCCcEeEEecCCC-CceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEE------EEEEeCCEE
Confidence 999999999999988776 89999999 789999999999999999999999888877765543 455578899
Q ss_pred EEEcCCCeEEEEeCCCcceeecccc---cCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 456 AAGSADGSVYIWSISKADIVRTLKE---HTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 456 ~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
++|+.||.|++||+.+++.+..+.. |..+|.+++|+ +.+|++|+.||.|++||
T Consensus 333 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd 388 (445)
T 2ovr_B 333 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD 388 (445)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence 9999999999999999999888876 88899999995 57999999999999996
No 74
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=8.7e-38 Score=300.39 Aligned_cols=242 Identities=24% Similarity=0.432 Sum_probs=213.5
Q ss_pred ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEe
Q 010470 225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT 304 (510)
Q Consensus 225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 304 (510)
...|.+++|+|+|++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|+.|++||+.+++....
T Consensus 123 ~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~ 202 (393)
T 1erj_A 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT 202 (393)
T ss_dssp CCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred ceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEE
Confidence 34599999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee--------ecCceeEEEEcCCCCEEEEecCCCcEE
Q 010470 305 LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII--------FHSNCNALAFSMDGQTIFSGHIDGNLR 376 (510)
Q Consensus 305 ~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~i~~i~~~~~~~~l~~~~~dg~i~ 376 (510)
+. +...+.+++|+|.++.+|++|+.||.|++||+.++..+..+. +...|.+++|+|+|.+|++|+.||.|+
T Consensus 203 ~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~ 281 (393)
T 1erj_A 203 LS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 281 (393)
T ss_dssp EE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence 76 567899999999788999999999999999999998877662 234599999999999999999999999
Q ss_pred EEECCCCc------------eeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCce
Q 010470 377 LWDIQTGK------------LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWS 444 (510)
Q Consensus 377 i~d~~~~~------------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 444 (510)
+||+++.. ....+..|. ..|.+++|+|++.+|++++.|+.|++||+.+++.+..+.+|...+..
T Consensus 282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~--- 357 (393)
T 1erj_A 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHK-DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS--- 357 (393)
T ss_dssp EEEC---------------CEEEEEECCS-SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE---
T ss_pred EEECCCCCCcccccCCCCCcceEEEeccc-CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEE---
Confidence 99997642 344555565 78999999999999999999999999999999999999888776654
Q ss_pred eEEEcC------CCCEEEEEcCCCeEEEEeCCCc
Q 010470 445 RSCISP------DESYVAAGSADGSVYIWSISKA 472 (510)
Q Consensus 445 ~~~~s~------~~~~l~~~~~dg~i~iwd~~~~ 472 (510)
++|++ ++++|++|+.||+|+||++...
T Consensus 358 -v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 358 -VAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp -EEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred -EEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 77765 7899999999999999997643
No 75
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-38 Score=329.80 Aligned_cols=306 Identities=17% Similarity=0.185 Sum_probs=239.4
Q ss_pred HhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcce-------
Q 010470 188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLS------- 260 (510)
Q Consensus 188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~------- 260 (510)
.+++++.|+.+++|+... ..+...+. |.+.|++++|+|++++|++|+.||.|++||+.++...
T Consensus 71 ~L~S~s~D~~v~lWd~~~---------~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~ 140 (902)
T 2oaj_A 71 YLVVINAKDTVYVLSLYS---------QKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNL 140 (902)
T ss_dssp EEEEEETTCEEEEEETTT---------CSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCH
T ss_pred EEEEEECcCeEEEEECCC---------CcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccc
Confidence 367788999999998543 23445554 6789999999999999999999999999999988753
Q ss_pred ----ecccccccceeEEEEecC-CCEEEEEeCCCeEEEEEcCCCCeeEeecCC------------------CCceEEEEE
Q 010470 261 ----STLYGCLGSVLDLAITHD-NRSVIAASSSNNLYVWDVNSGRVRHTLTGH------------------TDKVCAVDV 317 (510)
Q Consensus 261 ----~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------------~~~v~~i~~ 317 (510)
..+.+|.++|++++|+|+ +..+++|+.||.| +||+.++++...+..| ...|.+++|
T Consensus 141 ~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~f 219 (902)
T 2oaj_A 141 QKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLY 219 (902)
T ss_dssp HHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEE
T ss_pred cccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEE
Confidence 345679999999999996 4789999999999 9999999988888765 577999999
Q ss_pred ecCCCCEEEEEeCCCcEEEEECCCCeEeee--ee-----------------ecCceeEEE--------------------
Q 010470 318 SKISSRHVVSAAYDRTLKVWDLHKGYCVNT--II-----------------FHSNCNALA-------------------- 358 (510)
Q Consensus 318 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~-----------------~~~~i~~i~-------------------- 358 (510)
+| ++.+|++++.||.|++||+++++++.. +. ....|.+++
T Consensus 220 sp-dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~ 298 (902)
T 2oaj_A 220 HP-NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSIS 298 (902)
T ss_dssp CT-TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECST
T ss_pred cC-CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCC
Confidence 99 799999999999999999976654321 00 000111111
Q ss_pred --------------------------------------------------------------------------------
Q 010470 359 -------------------------------------------------------------------------------- 358 (510)
Q Consensus 359 -------------------------------------------------------------------------------- 358 (510)
T Consensus 299 ~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~ 378 (902)
T 2oaj_A 299 RGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIET 378 (902)
T ss_dssp TSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEE
T ss_pred CCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEE
Confidence
Q ss_pred ----------------------------------------------------------------EcCCCCEEEEecCCCc
Q 010470 359 ----------------------------------------------------------------FSMDGQTIFSGHIDGN 374 (510)
Q Consensus 359 ----------------------------------------------------------------~~~~~~~l~~~~~dg~ 374 (510)
|+|++++|++|+.||+
T Consensus 379 ~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~Dgt 458 (902)
T 2oaj_A 379 MLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGS 458 (902)
T ss_dssp EETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSE
T ss_pred EECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCc
Confidence 2345566777777777
Q ss_pred EEEEECCCCceee--eec--------ccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCce-----------------
Q 010470 375 LRLWDIQTGKLLS--EVA--------AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLE----------------- 427 (510)
Q Consensus 375 i~i~d~~~~~~~~--~~~--------~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~----------------- 427 (510)
|++||+.++.... .+. ..+...|.+++|+|+|++|++|+.||+|+|||+.+++
T Consensus 459 VrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~ 538 (902)
T 2oaj_A 459 VRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNF 538 (902)
T ss_dssp EEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------C
T ss_pred EEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceee
Confidence 7777776653210 010 0223689999999999999999999999999997652
Q ss_pred ----------------------------eeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceee---
Q 010470 428 ----------------------------VCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVR--- 476 (510)
Q Consensus 428 ----------------------------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--- 476 (510)
++..+..|... +.+++||||| +||+|+.||+|++||+.++..+.
T Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~----V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~ 613 (902)
T 2oaj_A 539 RRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGK----TSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMEN 613 (902)
T ss_dssp CSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCS----EEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred eeccccCCccccccccccCCCCCCCccceeEEEEcCCCc----EEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEee
Confidence 23444444444 4559999999 99999999999999998876543
Q ss_pred --ccc-ccCcCEEEEEEe-----CCC---CcEEEeeCCCeEEEcC
Q 010470 477 --TLK-EHTAPVLSCSWS-----GLG---KPLASADKNGVVCVWT 510 (510)
Q Consensus 477 --~~~-~~~~~v~~~~~~-----~~~---~~l~s~~~dg~i~iwd 510 (510)
.+. +|.+.|++++|+ ||| .+|++|+.||+|++||
T Consensus 614 ~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd 658 (902)
T 2oaj_A 614 IREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYK 658 (902)
T ss_dssp GGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEE
T ss_pred hhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEE
Confidence 454 899999999999 886 7999999999999996
No 76
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=9.6e-38 Score=329.35 Aligned_cols=308 Identities=19% Similarity=0.248 Sum_probs=264.7
Q ss_pred HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc
Q 010470 187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC 266 (510)
Q Consensus 187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 266 (510)
..++.+..+|.+.+|+... ......+.+|.++|++++|+|+|++|++|+.||.|++||+.+++.+..+.+|
T Consensus 26 ~~la~~~~~g~v~iwd~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 96 (814)
T 3mkq_A 26 PWVLTTLYSGRVEIWNYET---------QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96 (814)
T ss_dssp SEEEEEETTSEEEEEETTT---------TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CEEEEEeCCCEEEEEECCC---------CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecC
Confidence 3466777889999998543 3466788899999999999999999999999999999999999999999999
Q ss_pred ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC-CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEe
Q 010470 267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG-RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV 345 (510)
Q Consensus 267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 345 (510)
.+.|++++|+|++++|++++.||.|++||+.++ .....+.+|...|.+++|+|.++..+++++.||.|++||+.++...
T Consensus 97 ~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~ 176 (814)
T 3mkq_A 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176 (814)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCS
T ss_pred CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcce
Confidence 999999999999999999999999999999987 6778888999999999999966789999999999999999888777
Q ss_pred eeeeec--CceeEEEEcC--CCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEE
Q 010470 346 NTIIFH--SNCNALAFSM--DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLF 421 (510)
Q Consensus 346 ~~~~~~--~~i~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~ 421 (510)
..+..+ ..+.+++|+| ++.++++|+.||.|++||+.+++.+..+..+. ..|.+++|+|++.++++++.||.|++|
T Consensus 177 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~v~vw 255 (814)
T 3mkq_A 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM-SNVSFAVFHPTLPIIISGSEDGTLKIW 255 (814)
T ss_dssp EEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS-SCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred eEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC-CCEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 776654 5699999999 99999999999999999999999998888776 899999999999999999999999999
Q ss_pred EcCCceeeeEeecCCCeeecCceeEEEcCCCC--EEEEEcCCCeEEEEeCCCcceeec----------------------
Q 010470 422 DIRSLEVCGSLRATGNRVASNWSRSCISPDES--YVAAGSADGSVYIWSISKADIVRT---------------------- 477 (510)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~---------------------- 477 (510)
|+.+++....+..+...+. +++|+|+|. ++++++ ++.+.+|++..+.....
T Consensus 256 d~~~~~~~~~~~~~~~~v~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 330 (814)
T 3mkq_A 256 NSSTYKVEKTLNVGLERSW----CIATHPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFT 330 (814)
T ss_dssp ETTTCSEEEEECCSSSSEE----EEEECTTCGGGEEEEEE-TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEE
T ss_pred ECCCCcEEEEeecCCCcEE----EEEEccCCCceEEEEEe-CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeee
Confidence 9999998888877765544 489999987 466555 56688888754321111
Q ss_pred ---------------------ccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 478 ---------------------LKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 478 ---------------------~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+..+...+.+++|+|+|++|++++ ||.+.+|+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~ 383 (814)
T 3mkq_A 331 AVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYT 383 (814)
T ss_dssp EECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred eecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEE
Confidence 122444678899999999888887 88888885
No 77
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2e-37 Score=285.97 Aligned_cols=245 Identities=22% Similarity=0.347 Sum_probs=206.2
Q ss_pred ecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC--CCeeEeecCCCCceEEEEEecC-CCCEEEEEeCCCcEEEE
Q 010470 261 STLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS--GRVRHTLTGHTDKVCAVDVSKI-SSRHVVSAAYDRTLKVW 337 (510)
Q Consensus 261 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~v~~i~~~~~-~~~~l~s~~~dg~i~iw 337 (510)
..+.+|...|.+++|+|+|++|++|+.|+.|+|||+.+ .+.+..+.+|.++|.+++|+|. ++.+|++|+.||+|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 45678999999999999999999999999999999974 3678899999999999999863 47899999999999999
Q ss_pred ECCCCe--Eeeeeeec-CceeEEEEcCC--CCEEEEecCCCcEEEEECCCCce--eeeecccccccEEEEEEcCC-----
Q 010470 338 DLHKGY--CVNTIIFH-SNCNALAFSMD--GQTIFSGHIDGNLRLWDIQTGKL--LSEVAAHSLAAVTSISLSRS----- 405 (510)
Q Consensus 338 d~~~~~--~~~~~~~~-~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~i~~~~~----- 405 (510)
|+.++. .+..+..+ ..|.+++|+|+ |.+|++|+.||.|++||++++.. ...+..|. ..|.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~-~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHA-IGVNSASWAPATIEED 161 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCS-SCEEEEEECCCC----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeeccc-CccceEeecCCccccc
Confidence 998774 34444434 56999999997 89999999999999999987632 34455555 78999999997
Q ss_pred --------CCEEEEEecCCcEEEEEcCCce----eeeEeecCCCeeecCceeEEEcCCC---CEEEEEcCCCeEEEEeCC
Q 010470 406 --------GNIILTSGRDNLHNLFDIRSLE----VCGSLRATGNRVASNWSRSCISPDE---SYVAAGSADGSVYIWSIS 470 (510)
Q Consensus 406 --------~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~s~~~---~~l~~~~~dg~i~iwd~~ 470 (510)
+++|++++.|+.|++||++++. ....+.+|...+. +++|+|++ .+|++|+.||+|+|||+.
T Consensus 162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~----~v~~sp~~~~~~~las~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR----DVAWSPTVLLRSYMASVSQDRTCIIWTQD 237 (297)
T ss_dssp --------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEE----EEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceE----EEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence 5799999999999999998765 4556666666554 49999985 899999999999999987
Q ss_pred Ccc---eeecc--cccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 471 KAD---IVRTL--KEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 471 ~~~---~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+.. ....+ ..|...|.+++|+|+|++|++++.||.|++|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp STTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred CCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 743 11223 46888999999999999999999999999995
No 78
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.9e-37 Score=298.96 Aligned_cols=281 Identities=14% Similarity=0.161 Sum_probs=241.7
Q ss_pred HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecC----C---CEEEEeeCCCeEEEEeCCCCcc
Q 010470 187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYN----S---ARLISGGQDKSIKLWDTNTGSL 259 (510)
Q Consensus 187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~----~---~~l~s~~~dg~i~iwd~~~~~~ 259 (510)
..+++++.||.+++|+.... ....+..+...+.+|.++|++++|+|+ | .+|++++.||.|++||+.++..
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~ 103 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLL---DNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDE 103 (397)
T ss_dssp SEEEEEETTSEEEEEESBCC---TTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTT
T ss_pred CeEEEEcCCCEEEEEECCCc---ccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcc
Confidence 45678889999999986542 222344577888899999999999999 9 9999999999999999998887
Q ss_pred -----eeccccc-----ccceeEEEEe----cCCCE-EEEEeCCCeEEEEEcCC------CCeeE-----ee-------c
Q 010470 260 -----SSTLYGC-----LGSVLDLAIT----HDNRS-VIAASSSNNLYVWDVNS------GRVRH-----TL-------T 306 (510)
Q Consensus 260 -----~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~d~~i~iwd~~~------~~~~~-----~~-------~ 306 (510)
...+..| ...|.+++|+ |++.+ |++++.||.|++||+.+ ++.+. .+ .
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (397)
T 1sq9_A 104 TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPM 183 (397)
T ss_dssp TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSS
T ss_pred cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeecccc
Confidence 7888888 5999999999 99999 99999999999999998 66665 66 4
Q ss_pred CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee-------cCceeEEEEcCCCCEEEEecCC---CcEE
Q 010470 307 GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF-------HSNCNALAFSMDGQTIFSGHID---GNLR 376 (510)
Q Consensus 307 ~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~i~~i~~~~~~~~l~~~~~d---g~i~ 376 (510)
.|...|.+++|+| ++ ++++++.||.|++||++++..+..+.. ...+.+++|+|++.+|++++.| |.|+
T Consensus 184 ~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~ 261 (397)
T 1sq9_A 184 TPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCIT 261 (397)
T ss_dssp SSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEE
T ss_pred CCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEE
Confidence 4889999999999 66 999999999999999999999998887 5679999999999999999999 9999
Q ss_pred EEECCCCceeeeecc-------------cccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEee------cC--
Q 010470 377 LWDIQTGKLLSEVAA-------------HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLR------AT-- 435 (510)
Q Consensus 377 i~d~~~~~~~~~~~~-------------~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------~~-- 435 (510)
+||+++++.+..+.. +. ..|.+++|+|++++|++++.||.|++||+++++.+..+. .+
T Consensus 262 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 340 (397)
T 1sq9_A 262 LYETEFGERIGSLSVPTHSSQASLGEFAHS-SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEE 340 (397)
T ss_dssp EEETTTCCEEEEECBC--------CCBSBS-SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGG
T ss_pred EEECCCCcccceeccCcccccccccccccC-CcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchh
Confidence 999999999988887 55 899999999999999999999999999999999998888 44
Q ss_pred ---------CCeeecCceeEEEcCCC----------CEEEEEcCCCeEEEEeCCCcc
Q 010470 436 ---------GNRVASNWSRSCISPDE----------SYVAAGSADGSVYIWSISKAD 473 (510)
Q Consensus 436 ---------~~~~~~~~~~~~~s~~~----------~~l~~~~~dg~i~iwd~~~~~ 473 (510)
.......+..++|+|+| ++|++|+.||.|++|++.+|+
T Consensus 341 ~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 341 DILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp GCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred hhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 00002345569999998 799999999999999998763
No 79
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.1e-37 Score=317.21 Aligned_cols=277 Identities=23% Similarity=0.373 Sum_probs=233.5
Q ss_pred HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc
Q 010470 187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC 266 (510)
Q Consensus 187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 266 (510)
..+++++.|+.+++|+.... ......+...+.+|.+.|.+++|+|+|++|++|+.||.|+|||+.++.....+.+|
T Consensus 396 ~~l~s~s~D~~i~~W~~~~~----~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h 471 (694)
T 3dm0_A 396 DIIVSASRDKSIILWKLTKD----DKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGH 471 (694)
T ss_dssp SEEEEEETTSEEEEEECCCS----TTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CEEEEEeCCCcEEEEEccCC----CcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCC
Confidence 34778899999999985431 11123356788999999999999999999999999999999999999999999999
Q ss_pred ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee---cCCCCceEEEEEecCC-CCEEEEEeCCCcEEEEECCCC
Q 010470 267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL---TGHTDKVCAVDVSKIS-SRHVVSAAYDRTLKVWDLHKG 342 (510)
Q Consensus 267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~i~~~~~~-~~~l~s~~~dg~i~iwd~~~~ 342 (510)
...|.+++|+|++++|++++.|++|++||+......... .+|...|.+++|+|.. ...+++++.||.|++||++++
T Consensus 472 ~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~ 551 (694)
T 3dm0_A 472 TKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC 551 (694)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC
Confidence 999999999999999999999999999997654332222 4688999999999943 268999999999999999999
Q ss_pred eEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEE
Q 010470 343 YCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLF 421 (510)
Q Consensus 343 ~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~ 421 (510)
.+...+..| ..|.+++|+|+|++|++|+.||.|++||+++++.+..+..+ ..+.+++|+|++.++++++ ++.|++|
T Consensus 552 ~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~~~~-~~~i~iw 628 (694)
T 3dm0_A 552 KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN--SVIHALCFSPNRYWLCAAT-EHGIKIW 628 (694)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS--SCEEEEEECSSSSEEEEEE-TTEEEEE
T ss_pred cEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC--CcEEEEEEcCCCcEEEEEc-CCCEEEE
Confidence 988888766 45999999999999999999999999999999988777654 6899999999998887765 5669999
Q ss_pred EcCCceeeeEeecCCCee---------------ecCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470 422 DIRSLEVCGSLRATGNRV---------------ASNWSRSCISPDESYVAAGSADGSVYIWSIS 470 (510)
Q Consensus 422 d~~~~~~~~~~~~~~~~~---------------~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 470 (510)
|+.++..+..+..+.... ...+.+++|+|+|++|++|+.||.|+||++.
T Consensus 629 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 629 DLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 999998887765432210 1124568999999999999999999999985
No 80
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=9.9e-38 Score=290.70 Aligned_cols=247 Identities=20% Similarity=0.271 Sum_probs=200.8
Q ss_pred eeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc--ceecccccccceeEEEEec--CCCEEEEEeCCCeEEEE
Q 010470 219 HKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS--LSSTLYGCLGSVLDLAITH--DNRSVIAASSSNNLYVW 294 (510)
Q Consensus 219 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iw 294 (510)
..+.+|.+.|++++|+|+|++|++|+.|++|+|||+.++. .+..+.+|.+.|.+++|+| ++++|++++.|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 3567999999999999999999999999999999998764 4677889999999999986 48999999999999999
Q ss_pred EcCCCC--eeEeecCCCCceEEEEEecCC-CCEEEEEeCCCcEEEEECCCCeE---eeeeeec-CceeEEEEcCC-----
Q 010470 295 DVNSGR--VRHTLTGHTDKVCAVDVSKIS-SRHVVSAAYDRTLKVWDLHKGYC---VNTIIFH-SNCNALAFSMD----- 362 (510)
Q Consensus 295 d~~~~~--~~~~~~~~~~~v~~i~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~-~~i~~i~~~~~----- 362 (510)
|+.++. ....+.+|...|.+++|+|.. +.+|++|+.||.|++||+..+.. ...+..+ ..+.+++|+|+
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 166 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS 166 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence 998874 567788999999999999942 78999999999999999987532 2222233 45889999987
Q ss_pred ------------CCEEEEecCCCcEEEEECCCC---ceeeeecccccccEEEEEEcCCC----CEEEEEecCCcEEEEEc
Q 010470 363 ------------GQTIFSGHIDGNLRLWDIQTG---KLLSEVAAHSLAAVTSISLSRSG----NIILTSGRDNLHNLFDI 423 (510)
Q Consensus 363 ------------~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~i~~i~~~~~~----~~l~~~~~d~~i~i~d~ 423 (510)
+.+|++|+.||.|++||++.+ +....+..|. ..|.+++|+|++ .+|++++.|+.|++|++
T Consensus 167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~-~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~ 245 (316)
T 3bg1_A 167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHS-DWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTC 245 (316)
T ss_dssp ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCS-SCEEEEECCCCSSCSCCEEEEEETTCEEEEEEC
T ss_pred ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCC-CceEEEEecCCCCCCCceEEEEcCCCeEEEEEc
Confidence 478999999999999999755 3556666666 899999999986 79999999999999999
Q ss_pred CCce----eeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470 424 RSLE----VCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS 470 (510)
Q Consensus 424 ~~~~----~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 470 (510)
.+.. ....+..+.. .+..++|+|+|++|++++.||.|++|+..
T Consensus 246 ~~~~~~~~~~~~~~~~~~----~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 246 DDASSNTWSPKLLHKFND----VVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp SSTTCCCCBCCEEEECSS----CEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred cCccccchhhhhhhcCCC----cEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 7621 1122333333 34569999999999999999999999975
No 81
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.9e-36 Score=290.89 Aligned_cols=272 Identities=20% Similarity=0.288 Sum_probs=227.1
Q ss_pred hhhhcCCceEEecccccccccccCCCccceeeccc-cccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccc
Q 010470 189 LAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINA-HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCL 267 (510)
Q Consensus 189 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 267 (510)
++.++.|+.+++|+... ......+.. |.+.|++++|+|+|.+|++|+.||.|++||+.+++.+..+.+|.
T Consensus 106 l~~~~~d~~v~lw~~~~---------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 176 (401)
T 4aez_A 106 VVAVALERNVYVWNADS---------GSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQ 176 (401)
T ss_dssp EEEEEETTEEEEEETTT---------CCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred EEEEECCCeEEEeeCCC---------CcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCC
Confidence 45566778888887543 123333333 88999999999999999999999999999999999999999999
Q ss_pred cceeEEEEecCCCEEEEEeCCCeEEEEEcC-CCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEee
Q 010470 268 GSVLDLAITHDNRSVIAASSSNNLYVWDVN-SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN 346 (510)
Q Consensus 268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 346 (510)
..|.+++| ++.++++++.||.|++||+. .+.....+.+|...|.+++|+| ++.+|++++.||.|++||+.++.++.
T Consensus 177 ~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~ 253 (401)
T 4aez_A 177 ARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKF 253 (401)
T ss_dssp SCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEE
T ss_pred CceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccE
Confidence 99999999 46799999999999999998 4667888999999999999999 89999999999999999999998888
Q ss_pred eeeec-CceeEEEEcCCCC-EEEEec--CCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEE--ecCCcEEE
Q 010470 347 TIIFH-SNCNALAFSMDGQ-TIFSGH--IDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTS--GRDNLHNL 420 (510)
Q Consensus 347 ~~~~~-~~i~~i~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~--~~d~~i~i 420 (510)
.+..+ ..+.+++|+|++. ++++|+ .||.|++||+.+++.+..+..+ ..+.+++|+|++.+++++ +.||.|++
T Consensus 254 ~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~g~~dg~i~v 331 (401)
T 4aez_A 254 TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG--SQVTSLIWSPHSKEIMSTHGFPDNNLSI 331 (401)
T ss_dssp EECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS--SCEEEEEECSSSSEEEEEECTTTCEEEE
T ss_pred EecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC--CcEEEEEECCCCCeEEEEeecCCCcEEE
Confidence 87655 5699999999765 555654 7999999999999998888654 789999999999999994 48999999
Q ss_pred EEcCCceeeeE--eecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecc
Q 010470 421 FDIRSLEVCGS--LRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTL 478 (510)
Q Consensus 421 ~d~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 478 (510)
||+.++..... +..+...+ ..++|+|+|.+|++++.||.|++|++.+++.+...
T Consensus 332 ~~~~~~~~~~~~~~~~h~~~v----~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 332 WSYSSSGLTKQVDIPAHDTRV----LYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp EEEETTEEEEEEEEECCSSCC----CEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred EecCCccceeEEEecCCCCCE----EEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 99998665544 44554444 45999999999999999999999999998876654
No 82
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.5e-37 Score=286.98 Aligned_cols=244 Identities=23% Similarity=0.314 Sum_probs=200.1
Q ss_pred cccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC--eeEeecCCCCceEEEEEecC-CCCEEEEEeCCCcEEEEE
Q 010470 262 TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR--VRHTLTGHTDKVCAVDVSKI-SSRHVVSAAYDRTLKVWD 338 (510)
Q Consensus 262 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~-~~~~l~s~~~dg~i~iwd 338 (510)
.+.+|.+.|++++|+|+|++|++|+.|++|++||+.++. .+..+.+|.+.|.+++|+|. ++.+|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 356899999999999999999999999999999998875 46788999999999999763 478999999999999999
Q ss_pred CCCCe--Eeeeeeec-CceeEEEEcCC--CCEEEEecCCCcEEEEECCCCce---eeeecccccccEEEEEEcCC-----
Q 010470 339 LHKGY--CVNTIIFH-SNCNALAFSMD--GQTIFSGHIDGNLRLWDIQTGKL---LSEVAAHSLAAVTSISLSRS----- 405 (510)
Q Consensus 339 ~~~~~--~~~~~~~~-~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~i~~i~~~~~----- 405 (510)
++++. ....+..+ ..|.+++|+|+ +.+|++|+.||.|++||++.+.. ...+..|. ..+.++.|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~ 166 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT-IGCNAVSWAPAVVPGS 166 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSS-SCBCCCEECCCCCC--
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecccc-CCcceEEEccccCCcc
Confidence 98874 44455444 56999999997 78999999999999999987632 23334444 78999999997
Q ss_pred ------------CCEEEEEecCCcEEEEEcCCc---eeeeEeecCCCeeecCceeEEEcCCC----CEEEEEcCCCeEEE
Q 010470 406 ------------GNIILTSGRDNLHNLFDIRSL---EVCGSLRATGNRVASNWSRSCISPDE----SYVAAGSADGSVYI 466 (510)
Q Consensus 406 ------------~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~----~~l~~~~~dg~i~i 466 (510)
+.+|++++.|+.|++||++.. .....+..|...+. +++|+|++ .+|++|+.||+|++
T Consensus 167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~----~v~~sp~~~~~~~~las~s~D~~v~i 242 (316)
T 3bg1_A 167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVR----DVAWAPSIGLPTSTIASCSQDGRVFI 242 (316)
T ss_dssp ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEE----EEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceE----EEEecCCCCCCCceEEEEcCCCeEEE
Confidence 478999999999999999754 45556666665544 49999987 89999999999999
Q ss_pred EeCCCcc----eeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 467 WSISKAD----IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 467 wd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
|++.+.. ....+..|...|.+++|+|++++|++++.||.|++|+
T Consensus 243 w~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 243 WTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp EECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred EEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 9987631 2234566889999999999999999999999999995
No 83
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=6.6e-37 Score=295.60 Aligned_cols=279 Identities=19% Similarity=0.246 Sum_probs=231.6
Q ss_pred ceEEEEEecCCCEE-EEeeCCCeEEEEeCCCC----cceecccccccceeEEEEec-CCCEEEEEeCCCeEEEEEcCCC-
Q 010470 227 GCASILFEYNSARL-ISGGQDKSIKLWDTNTG----SLSSTLYGCLGSVLDLAITH-DNRSVIAASSSNNLYVWDVNSG- 299 (510)
Q Consensus 227 ~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~- 299 (510)
....++++|+...+ ++++.||.|+||++... .....+.+|.+.|++++|+| ++.+|++|+.||.|++||+.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 45568888876544 45788999999999654 23456779999999999999 9999999999999999999987
Q ss_pred ------CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee--ee-cCceeEEEEcCCCCEEEEec
Q 010470 300 ------RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI--IF-HSNCNALAFSMDGQTIFSGH 370 (510)
Q Consensus 300 ------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~-~~~i~~i~~~~~~~~l~~~~ 370 (510)
+++..+.+|...|.+++|+|.+.++|++++.||.|++||+.++..+..+ .. ...+.+++|+|++.+|++++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 6678899999999999999944479999999999999999999998888 43 35699999999999999999
Q ss_pred CCCcEEEEECCCCceeeee-cccccccEEEEEEcCCCCEEEEE---ecCCcEEEEEcCCcee-eeEeecCCCeeecCcee
Q 010470 371 IDGNLRLWDIQTGKLLSEV-AAHSLAAVTSISLSRSGNIILTS---GRDNLHNLFDIRSLEV-CGSLRATGNRVASNWSR 445 (510)
Q Consensus 371 ~dg~i~i~d~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~---~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~ 445 (510)
.||.|++||+++++.+..+ ..+....+.++.|+|++.+|+++ +.|+.|++||++++.. ....... ....+..
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~v~~ 272 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD---TSSGVLL 272 (402)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC---CCSSCEE
T ss_pred cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEecc---CCCceeE
Confidence 9999999999999999888 56653458999999999999999 7899999999998654 2222211 1123455
Q ss_pred EEEcCCCCEEE-EEcCCCeEEEEeCCCcce-eecccc--cCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 446 SCISPDESYVA-AGSADGSVYIWSISKADI-VRTLKE--HTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 446 ~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~-~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
++|+|++++|+ +|+.||.|++||+.+++. +..+.. |..+|.+++|+|++.++++ .++.+++|+
T Consensus 273 ~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~ 339 (402)
T 2aq5_A 273 PFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYK 339 (402)
T ss_dssp EEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred EEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEE
Confidence 89999999986 566799999999998874 444444 5589999999999988765 466889885
No 84
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-36 Score=289.48 Aligned_cols=253 Identities=18% Similarity=0.262 Sum_probs=213.0
Q ss_pred ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCC--CCcceecccccccceeEEEEecC--CCEEEEEeCCCeEE
Q 010470 217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTN--TGSLSSTLYGCLGSVLDLAITHD--NRSVIAASSSNNLY 292 (510)
Q Consensus 217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~ 292 (510)
+...+.+|.+.|++++|+|++++|++|+.||.|+|||+. ++..+..+.+|...|++++|+|+ +.+|++++.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 456788999999999999999999999999999999997 56677788899999999999987 99999999999999
Q ss_pred EEEcCCCC--eeEeecCCCCceEEEEEecCC--CCEEEEEeCCCcEEEEECCCCeEee--eee-ecCceeEEEEcC----
Q 010470 293 VWDVNSGR--VRHTLTGHTDKVCAVDVSKIS--SRHVVSAAYDRTLKVWDLHKGYCVN--TII-FHSNCNALAFSM---- 361 (510)
Q Consensus 293 iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~--~~~-~~~~i~~i~~~~---- 361 (510)
+||+.+++ ....+..|...|.+++|+| + +.++++++.||.|++||+.++.... .+. ....+.+++|+|
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 99999987 7778888999999999999 5 8899999999999999998874322 232 335699999999
Q ss_pred ---------CCCEEEEecCCCcEEEEECCCCc----eeeeecccccccEEEEEEcCC---CCEEEEEecCCcEEEEEcCC
Q 010470 362 ---------DGQTIFSGHIDGNLRLWDIQTGK----LLSEVAAHSLAAVTSISLSRS---GNIILTSGRDNLHNLFDIRS 425 (510)
Q Consensus 362 ---------~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~i~~i~~~~~---~~~l~~~~~d~~i~i~d~~~ 425 (510)
++.+|++|+.||.|++||++++. ....+..|. ..|.+++|+|+ +.+|++++.||.|++||+++
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~-~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS-DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS-SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEeccc-CcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 69999999999999999998765 334555555 89999999999 89999999999999999997
Q ss_pred ceeeeEe-ecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC
Q 010470 426 LEVCGSL-RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK 471 (510)
Q Consensus 426 ~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 471 (510)
+...... ..........+..++|+|+|++|++++.||.|++|++..
T Consensus 241 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 241 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 6421111 111122233456699999999999999999999999873
No 85
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2e-35 Score=278.46 Aligned_cols=280 Identities=21% Similarity=0.333 Sum_probs=237.1
Q ss_pred HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc
Q 010470 187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC 266 (510)
Q Consensus 187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 266 (510)
..+++++.|+.+++|+.... ......+...+.+|.+.|.+++|+|+|++|++|+.|+.|++|+............+
T Consensus 52 ~~l~S~s~D~~i~vWd~~~~----~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~ 127 (340)
T 4aow_A 52 DMILSASRDKTIIMWKLTRD----ETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGH 127 (340)
T ss_dssp TEEEEEETTSCEEEEEECCS----SSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CEEEEEcCCCeEEEEECCCC----CcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCC
Confidence 45788999999999985431 11223466788999999999999999999999999999999999999888888888
Q ss_pred ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe-eEeecCCCCceEEEEEecCC-CCEEEEEeCCCcEEEEECCCCeE
Q 010470 267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV-RHTLTGHTDKVCAVDVSKIS-SRHVVSAAYDRTLKVWDLHKGYC 344 (510)
Q Consensus 267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~ 344 (510)
...+..+.+++++.+|++++.|+.+++||+..... .....+|...+.++.|++.. ..++++++.|+.|++||+.++..
T Consensus 128 ~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~ 207 (340)
T 4aow_A 128 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL 207 (340)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE
T ss_pred CCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce
Confidence 99999999999999999999999999999876543 44557899999999998843 35678999999999999999999
Q ss_pred eeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEc
Q 010470 345 VNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDI 423 (510)
Q Consensus 345 ~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~ 423 (510)
+..+..+ ..|++++|+|++++|++|+.||.|++||+++++.+..+..+ ..+.++.|+|++.+ ++++.|+.|++||+
T Consensus 208 ~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~-~~~~~d~~i~iwd~ 284 (340)
T 4aow_A 208 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG--DIINALCFSPNRYW-LCAATGPSIKIWDL 284 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS--SCEEEEEECSSSSE-EEEEETTEEEEEET
T ss_pred eeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC--ceEEeeecCCCCce-eeccCCCEEEEEEC
Confidence 8888766 45999999999999999999999999999999998888766 68999999998765 45667999999999
Q ss_pred CCceeeeEeecCC-----CeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc
Q 010470 424 RSLEVCGSLRATG-----NRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD 473 (510)
Q Consensus 424 ~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 473 (510)
+++..+..+.... ......+.+++|+|+|++|++|+.||.|+|||+.+|+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 285 EGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp TTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 9888776665322 1223356679999999999999999999999999875
No 86
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-35 Score=282.02 Aligned_cols=274 Identities=17% Similarity=0.219 Sum_probs=241.4
Q ss_pred HhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccc
Q 010470 188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCL 267 (510)
Q Consensus 188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 267 (510)
.+++++.||.+++|+... ......+.+|.+.|.+++|+|++++|++++.||.|++||+.+++.+..+. +.
T Consensus 46 ~l~~~~~dg~i~vwd~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~ 115 (369)
T 3zwl_B 46 LLFSCSKDSSASVWYSLN---------GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SP 115 (369)
T ss_dssp EEEEEESSSCEEEEETTT---------CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CS
T ss_pred EEEEEeCCCEEEEEeCCC---------chhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cC
Confidence 466778889999997443 34677889999999999999999999999999999999999999888777 88
Q ss_pred cceeEEEEecCCCEEEEEeCC-----CeEEEEEcCCCC-----------eeEeecCCCC--ceEEEEEecCCCCEEEEEe
Q 010470 268 GSVLDLAITHDNRSVIAASSS-----NNLYVWDVNSGR-----------VRHTLTGHTD--KVCAVDVSKISSRHVVSAA 329 (510)
Q Consensus 268 ~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~-----------~~~~~~~~~~--~v~~i~~~~~~~~~l~s~~ 329 (510)
..|.+++|+|++.++++++.+ |.|.+||+..+. ....+..|.. .+.+++|+| ++.++++++
T Consensus 116 ~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~ 194 (369)
T 3zwl_B 116 VPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST-KGKYIIAGH 194 (369)
T ss_dssp SCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG-GGCEEEEEE
T ss_pred CCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC-CCCEEEEEc
Confidence 999999999999999999998 999999997654 3444555666 899999999 888999999
Q ss_pred CCCcEEEEECCC-CeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCC
Q 010470 330 YDRTLKVWDLHK-GYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGN 407 (510)
Q Consensus 330 ~dg~i~iwd~~~-~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 407 (510)
.||.|++||+.+ +..+..+..+ ..+.+++|+|++.+|++++.||.|++||+++++.+..+... ..+.++.|+|++.
T Consensus 195 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~~~~~~~~~~~ 272 (369)
T 3zwl_B 195 KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETD--CPLNTAVITPLKE 272 (369)
T ss_dssp TTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS--SCEEEEEECSSSS
T ss_pred CCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCC--CCceeEEecCCCc
Confidence 999999999998 7777777755 56999999999999999999999999999999988888743 7899999999999
Q ss_pred EEEEEecCC--------------cEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc
Q 010470 408 IILTSGRDN--------------LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD 473 (510)
Q Consensus 408 ~l~~~~~d~--------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 473 (510)
++++++.++ .+++||+.+++....+..+...+.. ++|+|++++|++++.||.|++|++.++.
T Consensus 273 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~----~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 273 FIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNT----VAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp EEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEE----EEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred eEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEE----EEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 999999888 8999999999999998887766554 9999999999999999999999998876
Q ss_pred eeecc
Q 010470 474 IVRTL 478 (510)
Q Consensus 474 ~~~~~ 478 (510)
....+
T Consensus 349 ~~~~~ 353 (369)
T 3zwl_B 349 FDFKY 353 (369)
T ss_dssp HTCCC
T ss_pred chhHH
Confidence 54443
No 87
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.3e-35 Score=285.18 Aligned_cols=282 Identities=22% Similarity=0.308 Sum_probs=226.9
Q ss_pred cCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeE
Q 010470 193 QVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLD 272 (510)
Q Consensus 193 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 272 (510)
..|+.|++|+..... ......+.+|.+.|++|+|+|+|++|++|+.||.|+|||+.+++.+..+.+|...+.+
T Consensus 122 gld~tV~lWd~~tg~-------~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~ 194 (420)
T 4gga_A 122 ALDNSVYLWSASSGD-------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS 194 (420)
T ss_dssp EETTEEEEEETTTCC-------EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred EeCCEEEEEECCCCC-------EEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEE
Confidence 347888888754310 1122345678889999999999999999999999999999999999999999999998
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEcCCC-CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE----eee
Q 010470 273 LAITHDNRSVIAASSSNNLYVWDVNSG-RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC----VNT 347 (510)
Q Consensus 273 ~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~ 347 (510)
+.|+ +.++++|+.|+.+++||.... ..+..+.+|...+..+.++| ++.++++++.||.+++||..++.. +..
T Consensus 195 ~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~ 271 (420)
T 4gga_A 195 LSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQT 271 (420)
T ss_dssp EEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCSCCSEE
T ss_pred EeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC-CCCeeeeeeccccceEEeeccccccceeeee
Confidence 8774 679999999999999998764 46678899999999999999 889999999999999999987653 223
Q ss_pred ee-ecCceeEEEEcCCCC-EEEE--ecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEe--cCCcEEEE
Q 010470 348 II-FHSNCNALAFSMDGQ-TIFS--GHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG--RDNLHNLF 421 (510)
Q Consensus 348 ~~-~~~~i~~i~~~~~~~-~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--~d~~i~i~ 421 (510)
.. ....|.+++|+|++. .+++ |+.|+.|++||+.++.....+..+ ..+.++.|+|+++.+++++ .|+.|+||
T Consensus 272 ~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~--~~v~~~~~~~~~~~lv~~sg~~d~~I~iw 349 (420)
T 4gga_A 272 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH--SQVCSILWSPHYKELISGHGFAQNQLVIW 349 (420)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS--SCEEEEEEETTTTEEEEEECTTTCCEEEE
T ss_pred ecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc--cceeeeeecCCCCeEEEEEecCCCEEEEE
Confidence 33 335699999999655 4444 568999999999999999888776 6899999999999988765 68999999
Q ss_pred EcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEE
Q 010470 422 DIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSW 490 (510)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 490 (510)
|+.+++.+..+.+|...+.. ++|+|+|.+|++|+.||+|+|||+....+......+...+....+
T Consensus 350 d~~~~~~v~~l~gH~~~V~~----l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 350 KYPTMAKVAELKGHTSRVLS----LTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSL 414 (420)
T ss_dssp ETTTCCEEEEECCCSSCEEE----EEECTTSSCEEEEETTTEEEEECCSCSSCC---------------
T ss_pred ECCCCcEEEEEcCCCCCEEE----EEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence 99999999999988776654 999999999999999999999999887776666555554444444
No 88
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.3e-35 Score=284.73 Aligned_cols=270 Identities=14% Similarity=0.177 Sum_probs=222.0
Q ss_pred HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEec-CCCEEEEeeCCCeEEEEeCCCCcceeccc-
Q 010470 187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEY-NSARLISGGQDKSIKLWDTNTGSLSSTLY- 264 (510)
Q Consensus 187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~- 264 (510)
..+++++.||.+++|+.... .......+.+|.+.|.+++|+| ++.+|++++.||.|++||+.+ .....+.
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~ 158 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDYDVQ-------NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAK 158 (383)
T ss_dssp TEEEEEEBTSCEEEEETTST-------TCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEEC
T ss_pred CEEEEEcCCCeEEEEeCCCc-------ccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEec
Confidence 45778888999999986531 1112333457999999999999 789999999999999999985 4444443
Q ss_pred --ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCC-EEEEEeCCCcEEEEECCC
Q 010470 265 --GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR-HVVSAAYDRTLKVWDLHK 341 (510)
Q Consensus 265 --~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~-~l~s~~~dg~i~iwd~~~ 341 (510)
.|...|.+++|+|++.+|++++.|+.|++||+ +++.+..+.+|...|.+++|+| ++. ++++++.|+.|++||+++
T Consensus 159 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~ 236 (383)
T 3ei3_B 159 TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRN 236 (383)
T ss_dssp CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGG
T ss_pred cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCC
Confidence 34588999999999999999999999999998 5788899999999999999999 555 999999999999999987
Q ss_pred ----CeEeeeeeecCceeEEEEcC-CCCEEEEecCCCcEEEEECCCCceeeeecccc----------------cccEEEE
Q 010470 342 ----GYCVNTIIFHSNCNALAFSM-DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS----------------LAAVTSI 400 (510)
Q Consensus 342 ----~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------------~~~i~~i 400 (510)
+.++..+.....+.+++|+| ++.+|++++.||.|++||+++++....+..+. ...+..+
T Consensus 237 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 316 (383)
T 3ei3_B 237 IKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVA 316 (383)
T ss_dssp CCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEE
T ss_pred CCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEE
Confidence 66777776667899999999 99999999999999999999887766655332 1345556
Q ss_pred EEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC
Q 010470 401 SLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK 471 (510)
Q Consensus 401 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 471 (510)
.|+|++.+ +++.|+.|++||+.+++.+..+..+.. ...+..++|+|+|++|++|+ ||.|++||+.+
T Consensus 317 ~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~--~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 317 GRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNA--AGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp ECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTB--CSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EecCCccc--ccCCCCeEEEEecCCCceeeeecCCCC--CceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 77777776 778999999999999999888876431 12234469999999999997 99999999864
No 89
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-35 Score=284.32 Aligned_cols=249 Identities=22% Similarity=0.354 Sum_probs=209.8
Q ss_pred CcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcC--CCCeeEeecCCCCceEEEEEecC-CCCEEEEEeCCCc
Q 010470 257 GSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVN--SGRVRHTLTGHTDKVCAVDVSKI-SSRHVVSAAYDRT 333 (510)
Q Consensus 257 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~s~~~dg~ 333 (510)
|+++..+.+|.+.|++++|+|++++|++++.||.|++||+. +++....+.+|...|.+++|+|. ++.+|++++.||.
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 34567788999999999999999999999999999999998 55677889999999999999872 2899999999999
Q ss_pred EEEEECCCCe--Eeeeeeec-CceeEEEEcCC--CCEEEEecCCCcEEEEECCCCce--eeeecccccccEEEEEEcC--
Q 010470 334 LKVWDLHKGY--CVNTIIFH-SNCNALAFSMD--GQTIFSGHIDGNLRLWDIQTGKL--LSEVAAHSLAAVTSISLSR-- 404 (510)
Q Consensus 334 i~iwd~~~~~--~~~~~~~~-~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~i~~~~-- 404 (510)
|++||+.++. .+..+..+ ..+.+++|+|+ +.+|++++.||.|++||++++.. ...+..+. ..|.+++|+|
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-~~v~~~~~~~~~ 159 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA-IGVNSASWAPAT 159 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCT-TCEEEEEECCCC
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCC-CceEEEEEcCcc
Confidence 9999999987 55555544 56999999999 99999999999999999988743 33444554 8999999999
Q ss_pred -----------CCCEEEEEecCCcEEEEEcCCce----eeeEeecCCCeeecCceeEEEcCC---CCEEEEEcCCCeEEE
Q 010470 405 -----------SGNIILTSGRDNLHNLFDIRSLE----VCGSLRATGNRVASNWSRSCISPD---ESYVAAGSADGSVYI 466 (510)
Q Consensus 405 -----------~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~s~~---~~~l~~~~~dg~i~i 466 (510)
++.+|++++.|+.|++||++++. ....+..+...+ .+++|+|+ +.+|++++.||.|++
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v----~~~~~sp~~~~~~~l~s~~~dg~i~i 235 (379)
T 3jrp_A 160 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV----RDVAWSPTVLLRSYLASVSQDRTCII 235 (379)
T ss_dssp ----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE----EEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred ccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcE----eEEEECCCCCCCCeEEEEeCCCEEEE
Confidence 69999999999999999998754 334455555444 45999999 899999999999999
Q ss_pred EeCCCcc-----eeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 467 WSISKAD-----IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 467 wd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
||+.++. .+.....|...|.+++|+|+|++|++++.||.|++|+
T Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 236 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp EEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred EeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 9998864 2333345889999999999999999999999999996
No 90
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=7e-36 Score=283.56 Aligned_cols=272 Identities=14% Similarity=0.179 Sum_probs=224.1
Q ss_pred hhhhcC---CceEEecccccccccccCCCccceeeccccccceEEEEEecC---CCEEEEeeCCCeEEEEeCCCCc-cee
Q 010470 189 LAKQQV---DGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYN---SARLISGGQDKSIKLWDTNTGS-LSS 261 (510)
Q Consensus 189 ~~~~~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~---~~~l~s~~~dg~i~iwd~~~~~-~~~ 261 (510)
++.++. |+.+++|+..... .......+|.++|.+++|+|+ |.+|++|+.||.|++||+.++. .+.
T Consensus 34 ~~~~s~~~~d~~v~iw~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 105 (357)
T 3i2n_A 34 VTMGNFARGTGVIQLYEIQHGD--------LKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY 105 (357)
T ss_dssp EEEEC--CCCEEEEEEEECSSS--------EEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE
T ss_pred EEecCccCCCcEEEEEeCCCCc--------ccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE
Confidence 344554 8899999854311 111223379999999999998 6999999999999999999888 788
Q ss_pred cccccccceeEEEE------ecCCCEEEEEeCCCeEEEEEcCCCC-eeEeecCCCC----ceEEEE----EecCCCCEEE
Q 010470 262 TLYGCLGSVLDLAI------THDNRSVIAASSSNNLYVWDVNSGR-VRHTLTGHTD----KVCAVD----VSKISSRHVV 326 (510)
Q Consensus 262 ~~~~~~~~v~~~~~------~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~----~v~~i~----~~~~~~~~l~ 326 (510)
.+.+|...|.++.| +|++++|++++.||.|++||+.++. ....+..|.+ .+.++. |+| ++.+++
T Consensus 106 ~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~ 184 (357)
T 3i2n_A 106 SVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVC 184 (357)
T ss_dssp EECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC--CCCEEE
T ss_pred EEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC-CCCEEE
Confidence 88999999999955 6899999999999999999999887 7777766554 789998 566 889999
Q ss_pred EEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcC---CCCEEEEecCCCcEEEEECCCCceeeeec-----ccccccEE
Q 010470 327 SAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSM---DGQTIFSGHIDGNLRLWDIQTGKLLSEVA-----AHSLAAVT 398 (510)
Q Consensus 327 s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~i~ 398 (510)
+++.||.|++||++++...........+.+++|+| ++.++++|+.||.|++||+++++....+. .+. ..|.
T Consensus 185 ~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~v~ 263 (357)
T 3i2n_A 185 AGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHK-STVW 263 (357)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCS-SCEE
T ss_pred EEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCc-CCEE
Confidence 99999999999999999877777778899999999 99999999999999999998877665554 554 8999
Q ss_pred EEEEcCCCC-EEEEEecCCcEEEEEcCCc-------------------eeeeEeecCCCeeecCceeEEEcCCCCEEE-E
Q 010470 399 SISLSRSGN-IILTSGRDNLHNLFDIRSL-------------------EVCGSLRATGNRVASNWSRSCISPDESYVA-A 457 (510)
Q Consensus 399 ~i~~~~~~~-~l~~~~~d~~i~i~d~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~ 457 (510)
+++|+|++. +|++++.||.|++||++.+ ..+..+..+...+ ..++|+|+|++|+ +
T Consensus 264 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v----~~~~~s~~~~~l~~s 339 (357)
T 3i2n_A 264 QVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPI----SSLDWSPDKRGLCVC 339 (357)
T ss_dssp EEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCE----EEEEECSSSTTEEEE
T ss_pred EEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCe----eEEEEcCCCCeEEEE
Confidence 999999998 8999999999999999854 3445555555444 4599999999998 7
Q ss_pred EcCCCeEEEEeCCCcce
Q 010470 458 GSADGSVYIWSISKADI 474 (510)
Q Consensus 458 ~~~dg~i~iwd~~~~~~ 474 (510)
++.||.|++||+.+.+.
T Consensus 340 ~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 340 SSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EETTSEEEEEEECC---
T ss_pred ecCCCcEEEEECCCccc
Confidence 99999999999987653
No 91
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.1e-36 Score=286.99 Aligned_cols=267 Identities=15% Similarity=0.242 Sum_probs=222.7
Q ss_pred hhhhcCCceEEecccccccccccCCCccceeecc-----ccccceEEEEEecC----CCEEEEeeCCCeEEEEeCCCCcc
Q 010470 189 LAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKIN-----AHEGGCASILFEYN----SARLISGGQDKSIKLWDTNTGSL 259 (510)
Q Consensus 189 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~s~~----~~~l~s~~~dg~i~iwd~~~~~~ 259 (510)
++.+..++.+++|+.... .....+. .|.+.|++++|+|+ |.+|++|+.||.|++||+.+++.
T Consensus 37 ~~~~~~~~~v~vw~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~ 107 (366)
T 3k26_A 37 VFATVGSNRVTLYECHSQ---------GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC 107 (366)
T ss_dssp EEEEEETTEEEEEEECGG---------GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCE
T ss_pred EEEECCCCEEEEEEcCCC---------cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceE
Confidence 344455668888885431 1222222 36788999999999 67999999999999999999999
Q ss_pred eecccccccceeEEEEec-CCCEEEEEeCCCeEEEEEcCCCCeeEee---cCCCCceEEEEEecCCCCEEEEEeCCCcEE
Q 010470 260 SSTLYGCLGSVLDLAITH-DNRSVIAASSSNNLYVWDVNSGRVRHTL---TGHTDKVCAVDVSKISSRHVVSAAYDRTLK 335 (510)
Q Consensus 260 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~ 335 (510)
+..+.+|...|.+++|+| ++.+|++++.||.|++||+.+++....+ .+|...|.+++|+| ++.+|++++.||.|+
T Consensus 108 ~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~ 186 (366)
T 3k26_A 108 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLK 186 (366)
T ss_dssp EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEE
T ss_pred eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC-CCCEEEEecCCCCEE
Confidence 999999999999999999 9999999999999999999999988888 78999999999999 889999999999999
Q ss_pred EEECCCCeEeeeee-----------------------------ecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCce-
Q 010470 336 VWDLHKGYCVNTII-----------------------------FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL- 385 (510)
Q Consensus 336 iwd~~~~~~~~~~~-----------------------------~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~- 385 (510)
+||++++.....+. ....+.+++|+ +.++++++.||.|++||++++..
T Consensus 187 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~ 264 (366)
T 3k26_A 187 LWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDD 264 (366)
T ss_dssp EEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCC
T ss_pred EEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCcccc
Confidence 99998776544332 34568999998 78999999999999999987654
Q ss_pred -------------eeeecccccccEEEEEEcCC--CCEEEEEecCCcEEEEEcCCceee----eEeecCCCeeecCceeE
Q 010470 386 -------------LSEVAAHSLAAVTSISLSRS--GNIILTSGRDNLHNLFDIRSLEVC----GSLRATGNRVASNWSRS 446 (510)
Q Consensus 386 -------------~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~~~~~~~~~ 446 (510)
+..+..+. ..|.+++|+|+ +.+|++++.||.|++||+.+++.. ..+..+. ....+..+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~v~~~ 341 (366)
T 3k26_A 265 IDKIKPSESNVTILGRFDYSQ-CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK--CGAAIRQT 341 (366)
T ss_dssp GGGCCTTCCCEEEEEEEECSS-CCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTT--CCSCEEEE
T ss_pred ccccccCCcchheeccccccC-CcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccc--cCCceEEE
Confidence 55566665 78999999999 999999999999999999987543 3454441 12344559
Q ss_pred EEcCCCCEEEEEcCCCeEEEEeCC
Q 010470 447 CISPDESYVAAGSADGSVYIWSIS 470 (510)
Q Consensus 447 ~~s~~~~~l~~~~~dg~i~iwd~~ 470 (510)
+|+|++++|++++.||.|++||+.
T Consensus 342 ~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 342 SFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EECTTSSEEEEEETTSEEEEEEC-
T ss_pred EeCCCCCeEEEEeCCCEEEEEEec
Confidence 999999999999999999999975
No 92
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-35 Score=271.39 Aligned_cols=269 Identities=23% Similarity=0.302 Sum_probs=233.1
Q ss_pred HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCC---cceecc
Q 010470 187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG---SLSSTL 263 (510)
Q Consensus 187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~ 263 (510)
..+++++.||.+++|+... ......+.+|.+.|.+++|+|++.+|++|+.||.|++|++... +....+
T Consensus 30 ~~l~s~~~dg~v~vw~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~ 100 (313)
T 3odt_A 30 SKVASVSRDGTVRLWSKDD---------QWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTL 100 (313)
T ss_dssp TEEEEEETTSEEEEEEESS---------SEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEE
T ss_pred CEEEEEEcCCcEEEEECCC---------CEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccch
Confidence 3467888999999998543 3456778899999999999999999999999999999998654 556778
Q ss_pred cccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 010470 264 YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY 343 (510)
Q Consensus 264 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 343 (510)
.+|...|.++.| +++++++++.||.|++|| .+.....+..|...+.++.|+|.++..+++++.||.|++|| .+.
T Consensus 101 ~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~ 174 (313)
T 3odt_A 101 IGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDK 174 (313)
T ss_dssp CCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTE
T ss_pred hhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCc
Confidence 899999999999 578999999999999999 67788889999999999999987889999999999999999 455
Q ss_pred Eeeeeee--cCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEE
Q 010470 344 CVNTIIF--HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLF 421 (510)
Q Consensus 344 ~~~~~~~--~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~ 421 (510)
....+.. ...+.+++|+|++. +++++.||.|++||+++++.+..+..+. ..|.+++|+|++ .|++++.||.|++|
T Consensus 175 ~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~~-~l~~~~~dg~v~iw 251 (313)
T 3odt_A 175 VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE-SFVYCIKLLPNG-DIVSCGEDRTVRIW 251 (313)
T ss_dssp EEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS-SCEEEEEECTTS-CEEEEETTSEEEEE
T ss_pred eEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC-ceEEEEEEecCC-CEEEEecCCEEEEE
Confidence 5555553 45699999999998 8899999999999999999999998776 899999999999 68999999999999
Q ss_pred EcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecc
Q 010470 422 DIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTL 478 (510)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 478 (510)
|+.+++....+..+...+. .++|+|++. +++++.||.|++||+.+++.....
T Consensus 252 d~~~~~~~~~~~~~~~~i~----~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 252 SKENGSLKQVITLPAISIW----SVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp CTTTCCEEEEEECSSSCEE----EEEECTTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred ECCCCceeEEEeccCceEE----EEEEccCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence 9999999998887766554 499999998 556888999999999988766544
No 93
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=5.5e-35 Score=276.62 Aligned_cols=277 Identities=13% Similarity=0.134 Sum_probs=215.2
Q ss_pred ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEE-EEEeCCCeEEEEE
Q 010470 217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSV-IAASSSNNLYVWD 295 (510)
Q Consensus 217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd 295 (510)
+...+.+|.+.|++++|+|||++|++|+.+| ++||++.++....... ...+..+.+.++++.+ ++++.|+.|++||
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEVVHIWD 87 (355)
T ss_dssp --------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE--CSCCCEEEECTTSSEEEEECSSTTEEEEEE
T ss_pred CccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee--cCCeEEEEEcCCCCEEEEEECCccEEEEEE
Confidence 4456688999999999999999999998775 7899998876654432 2357888999998887 4567789999999
Q ss_pred cCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC-eEeeeeeecCceeEEEEcCCCCEEEE--ecCC
Q 010470 296 VNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG-YCVNTIIFHSNCNALAFSMDGQTIFS--GHID 372 (510)
Q Consensus 296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~--~~~d 372 (510)
+.+++.+..+. +...|.++.+++ ..++++. ++.|++||+.++ +.+..+.. ....+++++ .++++ |+.+
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~~---~~~~~~~-~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~~ 158 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLSR---EFIVVSY-GDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNEFNL 158 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEECS---SEEEEEE-TTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEESSCT
T ss_pred CCCCcEEEEEE-CCCceEEEEEcC---CEEEEEE-cCEEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCCCcC
Confidence 99999988887 677999999976 3444444 889999999988 66666655 444566666 55655 6899
Q ss_pred CcEEEEECCCCc---------------e-eeeecccccccEEEEEEcCCCCEEEEEecCCc-EEEEEcCCceeeeEee-c
Q 010470 373 GNLRLWDIQTGK---------------L-LSEVAAHSLAAVTSISLSRSGNIILTSGRDNL-HNLFDIRSLEVCGSLR-A 434 (510)
Q Consensus 373 g~i~i~d~~~~~---------------~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~-~ 434 (510)
|.|++||+.++. + +..+..|. ..|.+++|+|+|.+|++++.|++ |++||+++++.+..+. +
T Consensus 159 g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~-~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g 237 (355)
T 3vu4_A 159 GQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT-NPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRG 237 (355)
T ss_dssp TCEEEEECCC------------------CCEEECCCS-SCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECT
T ss_pred cEEEEEECCCCCccccccccccccccCcccEEEEccC-CceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC
Confidence 999999998765 2 56677776 89999999999999999999998 9999999999998887 3
Q ss_pred -CCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccee--eccc---------------------ccCcCEEEEEE
Q 010470 435 -TGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIV--RTLK---------------------EHTAPVLSCSW 490 (510)
Q Consensus 435 -~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~---------------------~~~~~v~~~~~ 490 (510)
+...+ .+++|+|+|++|++++.||+|++||+..+... ..+. .+..+...++|
T Consensus 238 ~h~~~v----~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 313 (355)
T 3vu4_A 238 LDRADV----VDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAW 313 (355)
T ss_dssp TCCSCE----EEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEE
T ss_pred CCCCcE----EEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEE
Confidence 55444 45999999999999999999999999765311 1110 11223467899
Q ss_pred eCCCCcEEEeeCCCeEEEcC
Q 010470 491 SGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 491 ~~~~~~l~s~~~dg~i~iwd 510 (510)
+|+|+.|++++.||.+++|+
T Consensus 314 ~~d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 314 ISESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp SSSSEEEEEETTTTEEEEEE
T ss_pred eCCCCEEEEEeCCCeEEEEE
Confidence 99999999999999999985
No 94
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-35 Score=286.66 Aligned_cols=281 Identities=15% Similarity=0.121 Sum_probs=229.7
Q ss_pred ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc---ceeccc-------------------------------------
Q 010470 225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGS---LSSTLY------------------------------------- 264 (510)
Q Consensus 225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~------------------------------------- 264 (510)
..++.+++|+|+|++|+++ .++.|++||+.+|+ .+..+.
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578999999999966665 47899999998888 444433
Q ss_pred -----------------ccccceeEEEEecCCCEE-EEEeCCCeEEEEEcC--CCCeeEeec--CCCCceEEEEEecCCC
Q 010470 265 -----------------GCLGSVLDLAITHDNRSV-IAASSSNNLYVWDVN--SGRVRHTLT--GHTDKVCAVDVSKISS 322 (510)
Q Consensus 265 -----------------~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~--~~~~~~~~~--~~~~~v~~i~~~~~~~ 322 (510)
+|.+.|.+++|+|++++| ++++.||.|++||+. +++.+..+. .|...|.+++|+| ++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~ 161 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DD 161 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CC
Confidence 234479999999999996 888899999999999 888888876 5678999999999 88
Q ss_pred CEEEEEeCCCcEEEEECCCCeEee----eeeec-CceeEEEEcCC---CCEEEEecCCCcEEEEECCCCceeeeeccccc
Q 010470 323 RHVVSAAYDRTLKVWDLHKGYCVN----TIIFH-SNCNALAFSMD---GQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL 394 (510)
Q Consensus 323 ~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~-~~i~~i~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 394 (510)
.+|++++.+|.|++|++.++.... .+..+ ..+.+++|+|+ +.+|++|+.|+.|++||+++++.+..+...+.
T Consensus 162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~ 241 (450)
T 2vdu_B 162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK 241 (450)
T ss_dssp SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS
T ss_pred CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC
Confidence 999999999999999998876543 44444 56999999999 99999999999999999999988887553344
Q ss_pred ccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCC---------------------CeeecCceeEEEcCCCC
Q 010470 395 AAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATG---------------------NRVASNWSRSCISPDES 453 (510)
Q Consensus 395 ~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~s~~~~ 453 (510)
..|.+++|+ ++.+|++++.|+.|++||+.+++.+..+..+. ......+..++|+|+++
T Consensus 242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 320 (450)
T 2vdu_B 242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP 320 (450)
T ss_dssp SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS
T ss_pred CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC
Confidence 899999999 99999999999999999999998887775321 01223456789999999
Q ss_pred EEEEEc-CCCeEEEEeC--CCc---ceeecccccCcCEEEEEEeCCCCcEEEeeC------CCeEEEc
Q 010470 454 YVAAGS-ADGSVYIWSI--SKA---DIVRTLKEHTAPVLSCSWSGLGKPLASADK------NGVVCVW 509 (510)
Q Consensus 454 ~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------dg~i~iw 509 (510)
+|++++ .++.|++|++ .++ ..+..+..| +.|.+++|+|++.++++++. +..|.+|
T Consensus 321 ~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 321 FVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp EEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEE
T ss_pred EEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEE
Confidence 999998 8999999999 555 667777777 88999999996533333332 4456776
No 95
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-36 Score=296.77 Aligned_cols=269 Identities=12% Similarity=0.074 Sum_probs=205.8
Q ss_pred CccceeeccccccceEEEEEecCC---------CEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEE
Q 010470 214 PSTCKHKINAHEGGCASILFEYNS---------ARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIA 284 (510)
Q Consensus 214 ~~~~~~~~~~h~~~v~~~~~s~~~---------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 284 (510)
+..+...+. +.+.|.+|+|+|++ ++||+|+.++.. -..+|++..+++
T Consensus 123 ~~r~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~-----------------------~~~~~~~~~laS 178 (524)
T 2j04_B 123 GKRRGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD-----------------------EPLNEHLEMFDK 178 (524)
T ss_dssp CCSCEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC--------------------------------------
T ss_pred CCcceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccC-----------------------Cccchhhhhhcc
Confidence 344444554 67899999999987 799999876420 013689999999
Q ss_pred EeCCCeEEEEEcCCCCee----EeecCCCCceEEEEEecC-----CCCEEEEEeCCCcEEEEECCCCeEe----------
Q 010470 285 ASSSNNLYVWDVNSGRVR----HTLTGHTDKVCAVDVSKI-----SSRHVVSAAYDRTLKVWDLHKGYCV---------- 345 (510)
Q Consensus 285 ~~~d~~i~iwd~~~~~~~----~~~~~~~~~v~~i~~~~~-----~~~~l~s~~~dg~i~iwd~~~~~~~---------- 345 (510)
++.|++|+||++.+++.. ..+..|.+.|.+++|+|. ++.+|++++.||+|++||+.++...
T Consensus 179 ~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p 258 (524)
T 2j04_B 179 EKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKP 258 (524)
T ss_dssp ---CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSC
T ss_pred CCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCc
Confidence 999999999999887642 346678899999999994 2579999999999999999876421
Q ss_pred -eeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCc-eeeeecccccccEEEE--EEcCCC-CEEEEEecCCcEE
Q 010470 346 -NTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK-LLSEVAAHSLAAVTSI--SLSRSG-NIILTSGRDNLHN 419 (510)
Q Consensus 346 -~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~i--~~~~~~-~~l~~~~~d~~i~ 419 (510)
..+..+ ..+.+++|+|++ .|++|+.||+|++||++++. +...+..|. ..|.++ .|+|+| .+|++++.|++|+
T Consensus 259 ~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~-~~V~sv~~~~s~~g~~~laS~S~D~tvk 336 (524)
T 2j04_B 259 SLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHD-SYILSVSTAYSDFEDTVVSTVAVDGYFY 336 (524)
T ss_dssp SEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSS-SCEEEEEEECCTTSCCEEEEEETTSEEE
T ss_pred eEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeeccc-ccEEEEEEEcCCCCCeEEEEeccCCeEE
Confidence 233333 469999999864 89999999999999998764 444566666 899999 578888 8999999999999
Q ss_pred EEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEE
Q 010470 420 LFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLAS 499 (510)
Q Consensus 420 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 499 (510)
|||+++++....+..+... ..+.+++|+|++..+++++.|++|++||+.++..+..+.+|.+.|++++|+|+|++|++
T Consensus 337 lWD~~~~~~~~~~~~~~~~--~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~S 414 (524)
T 2j04_B 337 IFNPKDIATTKTTVSRFRG--SNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLA 414 (524)
T ss_dssp EECGGGHHHHCEEEEECSC--CSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEE
T ss_pred EEECCCCCccccccccccc--CcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEE
Confidence 9999988776666554321 11345899999999999999999999999999988888899999999999999999999
Q ss_pred eeCCCeEEEcC
Q 010470 500 ADKNGVVCVWT 510 (510)
Q Consensus 500 ~~~dg~i~iwd 510 (510)
|+.||+|++||
T Consensus 415 gs~Dgtv~lwd 425 (524)
T 2j04_B 415 GSADGSLIITN 425 (524)
T ss_dssp EETTTEEECCB
T ss_pred EECCCEEEEEe
Confidence 99999999996
No 96
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-36 Score=310.48 Aligned_cols=252 Identities=18% Similarity=0.257 Sum_probs=209.6
Q ss_pred eeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCC--CCcceecccccccceeEEEEecC--CCEEEEEeCCCeEEE
Q 010470 218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTN--TGSLSSTLYGCLGSVLDLAITHD--NRSVIAASSSNNLYV 293 (510)
Q Consensus 218 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i 293 (510)
...+.+|.++|++++|+|+|++|++|+.||.|+|||+. ++.....+.+|.++|++++|+|+ +++|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 34678999999999999999999999999999999997 55677888999999999999988 999999999999999
Q ss_pred EEcCCCC--eeEeecCCCCceEEEEEecCC--CCEEEEEeCCCcEEEEECCCCeEe--eeee-ecCceeEEEEcC-----
Q 010470 294 WDVNSGR--VRHTLTGHTDKVCAVDVSKIS--SRHVVSAAYDRTLKVWDLHKGYCV--NTII-FHSNCNALAFSM----- 361 (510)
Q Consensus 294 wd~~~~~--~~~~~~~~~~~v~~i~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~--~~~~-~~~~i~~i~~~~----- 361 (510)
||+.+++ ....+.+|...|.+++|+| + +..+++|+.||.|++||+.++... ..+. ....+.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EECCCCcccccccccCCCCCeEEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 9999887 7778889999999999999 6 899999999999999999877332 2222 345699999999
Q ss_pred --------CCCEEEEecCCCcEEEEECCCC----ceeeeecccccccEEEEEEcCC---CCEEEEEecCCcEEEEEcCCc
Q 010470 362 --------DGQTIFSGHIDGNLRLWDIQTG----KLLSEVAAHSLAAVTSISLSRS---GNIILTSGRDNLHNLFDIRSL 426 (510)
Q Consensus 362 --------~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~i~~i~~~~~---~~~l~~~~~d~~i~i~d~~~~ 426 (510)
++..+++|+.||.|++||++++ .....+..|. ..|.+++|+|+ +.++++++.||.|++||++++
T Consensus 161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS-DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp ------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCS-SCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCC-CcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence 5899999999999999999877 4445566665 89999999999 899999999999999999876
Q ss_pred eeeeEe-ecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC
Q 010470 427 EVCGSL-RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK 471 (510)
Q Consensus 427 ~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 471 (510)
...... ..........+.+++|+|+|.+|++|+.||.|++|++..
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 421111 111122233455699999999999999999999999874
No 97
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1e-35 Score=290.04 Aligned_cols=277 Identities=17% Similarity=0.205 Sum_probs=215.9
Q ss_pred HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEec-CCCEEEEeeCCCeEEEEeCCCCcceecc--
Q 010470 187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEY-NSARLISGGQDKSIKLWDTNTGSLSSTL-- 263 (510)
Q Consensus 187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~-- 263 (510)
..+++|+.||.|++|+.... .......+.+|.+.|++++|+| ++.+|++|+.||+|++||+.++......
T Consensus 133 ~~lasGs~dg~i~lWd~~~~-------~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 205 (435)
T 4e54_B 133 STVAVGSKGGDIMLWNFGIK-------DKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASS 205 (435)
T ss_dssp TCEEEEETTSCEEEECSSCC-------SCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECC
T ss_pred CEEEEEeCCCEEEEEECCCC-------CceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEecc
Confidence 35778999999999985431 1234556789999999999998 7899999999999999999876543322
Q ss_pred cccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 010470 264 YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY 343 (510)
Q Consensus 264 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 343 (510)
..+...+.+++|+|++.+|++|+.||.|++||+. ++.+..+.+|...|.+++|+|.+..++++|+.|+.|++||++++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~ 284 (435)
T 4e54_B 206 DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR 284 (435)
T ss_dssp SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCC
T ss_pred CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccc
Confidence 2345567899999999999999999999999986 566778899999999999999666789999999999999998876
Q ss_pred Eeeee----eecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccccc-----ccEEEEEEcCCCCEEEEEe-
Q 010470 344 CVNTI----IFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL-----AAVTSISLSRSGNIILTSG- 413 (510)
Q Consensus 344 ~~~~~----~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~- 413 (510)
....+ .+...|++++|+|+|.+|++|+.||.|++||+.++.....+..+.. ..+....|+|++.++++++
T Consensus 285 ~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (435)
T 4e54_B 285 GKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRY 364 (435)
T ss_dssp SSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECC
T ss_pred ccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEc
Confidence 54433 2335699999999999999999999999999999887766654421 1233456777777666654
Q ss_pred -----------cCCcEEEEEcCCceeeeEeec-CCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccee
Q 010470 414 -----------RDNLHNLFDIRSLEVCGSLRA-TGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIV 475 (510)
Q Consensus 414 -----------~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 475 (510)
.++.|++||..+++.+..+.. +...+.+ ..+|+|+|.+|++|+ |+.|+||++.+++..
T Consensus 365 ~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s---~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 365 PDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISS---LNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp CCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCC---EEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred CCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEE---EEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 235799999999988877653 3333322 136999999999887 789999999987653
No 98
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=2.5e-34 Score=280.57 Aligned_cols=283 Identities=16% Similarity=0.160 Sum_probs=241.0
Q ss_pred eeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCccee-----cccccccceeEEEEecCCCEEEEEeCCCeEE
Q 010470 218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSS-----TLYGCLGSVLDLAITHDNRSVIAASSSNNLY 292 (510)
Q Consensus 218 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 292 (510)
...+..+ ..+.+++|+|++.++++++.++.|++||+.+++... .+.+|.+.|.+++|+|++.++++++.|+.|+
T Consensus 116 ~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~ 194 (433)
T 3bws_A 116 ISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVH 194 (433)
T ss_dssp EEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEE
T ss_pred EEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEE
Confidence 3334444 346699999988888888889999999999988776 4568889999999999999999999999999
Q ss_pred EEEcCCCCeeEeecCCCCceEEEEEecCCCCEE-EEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEec-
Q 010470 293 VWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHV-VSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGH- 370 (510)
Q Consensus 293 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~- 370 (510)
+||+.+++....+..|...+.+++|+| ++..+ ++++.|+.|++||+.+++.+..+..+..+.+++|+|+|+.+++++
T Consensus 195 ~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~ 273 (433)
T 3bws_A 195 VFDLKTLAYKATVDLTGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQF 273 (433)
T ss_dssp EEETTTCCEEEEEECSSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEE
T ss_pred EEECCCceEEEEEcCCCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEEC
Confidence 999999999999999999999999999 56655 566689999999999999988888888899999999999999887
Q ss_pred -------CCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEE-EEEecCCcEEEEEcCCceeeeEeecCCCeeecC
Q 010470 371 -------IDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNII-LTSGRDNLHNLFDIRSLEVCGSLRATGNRVASN 442 (510)
Q Consensus 371 -------~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 442 (510)
.||.|++||+.+++....+... ..+.+++|+|+++.+ ++++.++.|.+||+.+++....+.....
T Consensus 274 ~~~~~~~~dg~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~----- 346 (433)
T 3bws_A 274 SASNQESGGGRLGIYSMDKEKLIDTIGPP--GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDK----- 346 (433)
T ss_dssp ESCTTCSCCEEEEEEETTTTEEEEEEEEE--ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSS-----
T ss_pred CCCccccCCCeEEEEECCCCcEEeeccCC--CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCC-----
Confidence 5889999999999877766433 578999999999755 5668899999999999888877753322
Q ss_pred ceeEEEcCCCCEEEEEcC---------------CCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeC-CCeE
Q 010470 443 WSRSCISPDESYVAAGSA---------------DGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADK-NGVV 506 (510)
Q Consensus 443 ~~~~~~s~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i 506 (510)
+..++|+|+|+++++++. ||.|++||+.+++.+..+.. ...+.+++|+|+|++|++++. ||.|
T Consensus 347 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i 425 (433)
T 3bws_A 347 PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQI 425 (433)
T ss_dssp EEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEE
T ss_pred CCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeE
Confidence 345899999999888776 57999999999998888875 457899999999999988775 9999
Q ss_pred EEcC
Q 010470 507 CVWT 510 (510)
Q Consensus 507 ~iwd 510 (510)
++|+
T Consensus 426 ~v~~ 429 (433)
T 3bws_A 426 RVYR 429 (433)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9996
No 99
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=6.4e-35 Score=281.71 Aligned_cols=276 Identities=19% Similarity=0.219 Sum_probs=228.3
Q ss_pred hhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEec-CCCEEEEeeCCCeEEEEeCCCC-------cce
Q 010470 189 LAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEY-NSARLISGGQDKSIKLWDTNTG-------SLS 260 (510)
Q Consensus 189 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~-------~~~ 260 (510)
++.++.+|.+.+|+..... ........+.+|.+.|++++|+| ++.+|++|+.||.|+|||+.++ ..+
T Consensus 50 ~~~~~~~g~i~v~~~~~~~-----~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~ 124 (402)
T 2aq5_A 50 ICEASGGGAFLVLPLGKTG-----RVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPV 124 (402)
T ss_dssp EBCCSSSCCEEEEETTCCE-----ECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCS
T ss_pred EEEEcCCCEEEEEECccCC-----CCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCce
Confidence 3456778888888753311 11234556889999999999999 9999999999999999999987 567
Q ss_pred ecccccccceeEEEEecCC-CEEEEEeCCCeEEEEEcCCCCeeEee--cCCCCceEEEEEecCCCCEEEEEeCCCcEEEE
Q 010470 261 STLYGCLGSVLDLAITHDN-RSVIAASSSNNLYVWDVNSGRVRHTL--TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 337 (510)
Q Consensus 261 ~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iw 337 (510)
..+.+|...|.+++|+|++ .+|++++.||.|++||+.+++.+..+ .+|...|.+++|+| ++.+|++++.||.|++|
T Consensus 125 ~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iw 203 (402)
T 2aq5_A 125 ITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVI 203 (402)
T ss_dssp EEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEE
T ss_pred EEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEE
Confidence 7888999999999999998 69999999999999999999999999 88999999999999 88999999999999999
Q ss_pred ECCCCeEeeee-eecCc--eeEEEEcCCCCEEEEe---cCCCcEEEEECCCCce-eeeecccccccEEEEEEcCCCCEEE
Q 010470 338 DLHKGYCVNTI-IFHSN--CNALAFSMDGQTIFSG---HIDGNLRLWDIQTGKL-LSEVAAHSLAAVTSISLSRSGNIIL 410 (510)
Q Consensus 338 d~~~~~~~~~~-~~~~~--i~~i~~~~~~~~l~~~---~~dg~i~i~d~~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~ 410 (510)
|++++..+..+ ..+.. +.++.|+|++.+|++| +.||.|++||++++.. +......+...+.++.|+|++.+++
T Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 283 (402)
T 2aq5_A 204 EPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVY 283 (402)
T ss_dssp ETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEE
T ss_pred eCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEE
Confidence 99999998888 44432 7999999999999999 7999999999988764 3333333337899999999999987
Q ss_pred E-EecCCcEEEEEcCCcee-eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcce
Q 010470 411 T-SGRDNLHNLFDIRSLEV-CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADI 474 (510)
Q Consensus 411 ~-~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 474 (510)
+ ++.||.|++||+.+++. ...+..+. ....+..++|+|++.++++ .++.+++|++.++..
T Consensus 284 ~~g~~dg~i~i~d~~~~~~~~~~l~~~~--~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 284 LCGKGDSSIRYFEITSEAPFLHYLSMFS--SKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp EEETTCSCEEEEEECSSTTCEEEEEEEC--CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred EEEcCCCeEEEEEecCCCcceEeecccc--cCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 5 55799999999998774 44444332 2234556999999998874 466899999987643
No 100
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-35 Score=284.43 Aligned_cols=257 Identities=12% Similarity=0.056 Sum_probs=209.0
Q ss_pred cccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeE
Q 010470 224 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH 303 (510)
Q Consensus 224 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 303 (510)
-..+|.+++|+|||+++||++.|++|+ |...+ ..+.+|...|.+++|+|+| .++.+.+|+ ++...
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~---~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~---~~~~~ 78 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA---KDINCNSKNLFHVKEFPLE-------FENKLDFEL---AQQNG 78 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCC---SCCSSBGGGTEEEEEECCC-------CCCTTTTSC---CCSSC
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--ccccc---ceecCCCccEEEEEECCCC-------CcceEEEEe---CCCce
Confidence 457899999999999999999999999 64444 4557999999999999999 455555554 33222
Q ss_pred eec-CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC------ceeEEEEcCCCCEEEEecCCCcEE
Q 010470 304 TLT-GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS------NCNALAFSMDGQTIFSGHIDGNLR 376 (510)
Q Consensus 304 ~~~-~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~i~~i~~~~~~~~l~~~~~dg~i~ 376 (510)
.+. .|...|.+++|+| ++..|++++.||.|++||..+ ++..+. +. .+.+++|+|||++|++|+.||+|+
T Consensus 79 ~~~~~~~~~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk 154 (588)
T 2j04_A 79 LLNSQPVCYPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ 154 (588)
T ss_dssp SSTTSCSCCEEEEEECS-SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred EeecCCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence 333 4688999999999 899999999999999999643 556555 43 399999999999999999999999
Q ss_pred EEECCCCce-------eeee----cccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCcee---eeEee-cCCCeeec
Q 010470 377 LWDIQTGKL-------LSEV----AAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV---CGSLR-ATGNRVAS 441 (510)
Q Consensus 377 i~d~~~~~~-------~~~~----~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~-~~~~~~~~ 441 (510)
+||+.++.. +..+ .+| ...|.+++|+|+| +++++.|+.|++||+.++.. ...+. ++...+.
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~gh-~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~- 230 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAGS-KDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKIT- 230 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTTC-CCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCC-
T ss_pred EEECCCCccccccceeeeeeecccccc-cccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEE-
Confidence 999988753 4555 333 3799999999999 88899999999999988763 23443 4444443
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEE--eCCCCcEEEeeCCCeEEEcC
Q 010470 442 NWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSW--SGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 442 ~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~~~dg~i~iwd 510 (510)
.++|+ |++|++++ +|+|++||+.+++......+|.+.|.+++| +|++..|++++.||+ ++|.
T Consensus 231 ---svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~ 294 (588)
T 2j04_A 231 ---DLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLL 294 (588)
T ss_dssp ---CEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred ---EEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence 48898 68999988 699999999988774444379999999999 999999999999999 8883
No 101
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.1e-34 Score=277.03 Aligned_cols=242 Identities=17% Similarity=0.203 Sum_probs=213.1
Q ss_pred ccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC--eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 010470 263 LYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR--VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH 340 (510)
Q Consensus 263 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~ 340 (510)
+..|..+|++++|+|++++|++++.|+.|++||+.+++ ....+.+|...|.+++|+| ++.+|++++.||.|++||+.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeC-CCCEEEEEcCCCeEEEEECC
Confidence 34588999999999999999999999999999999887 8888999999999999999 88999999999999999999
Q ss_pred CCeEeeeee---ecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCce---eeeecccccccEEEEEEcCCCCEEEEEec
Q 010470 341 KGYCVNTII---FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL---LSEVAAHSLAAVTSISLSRSGNIILTSGR 414 (510)
Q Consensus 341 ~~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 414 (510)
++.....+. ....+.+++|+|++++|++++.||.|++||+..+.. ...+...+...|.+++|+|++++|++++.
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 162 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 162 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence 887555443 345699999999999999999999999999988763 34443443489999999999999999999
Q ss_pred CCcEEEEEcC------------------CceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceee
Q 010470 415 DNLHNLFDIR------------------SLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVR 476 (510)
Q Consensus 415 d~~i~i~d~~------------------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 476 (510)
||.|++||++ .+.....+..+...+ .+++|+|++.+|++++.||.|++||+.+++.+.
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 238 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV----HGVCFSANGSRVAWVSHDSTVCLADADKKMAVA 238 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE----EEEEECSSSSEEEEEETTTEEEEEEGGGTTEEE
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeE----EEEEECCCCCEEEEEeCCCEEEEEECCCCceeE
Confidence 9999999954 566777776555544 449999999999999999999999999999999
Q ss_pred cccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 477 TLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 477 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
.+..|..+|.+++|+|++.+|+++ .||.|++|+
T Consensus 239 ~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~ 271 (372)
T 1k8k_C 239 TLASETLPLLAVTFITESSLVAAG-HDCFPVLFT 271 (372)
T ss_dssp EEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEE
T ss_pred EEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEE
Confidence 999999999999999999888777 899999996
No 102
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.4e-36 Score=286.24 Aligned_cols=240 Identities=14% Similarity=0.173 Sum_probs=198.3
Q ss_pred cccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC--CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 010470 264 YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG--RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK 341 (510)
Q Consensus 264 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~ 341 (510)
..+.++|++++|+|++++|++++.|+.|++||+.++ +....+.+|...|.+++|+| ++++|++++.||.|++||+.+
T Consensus 8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP-KSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECT-TTCCEEEEETTSSEEEC----
T ss_pred ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeC-CCCEEEEEeCCCeEEEEEcCC
Confidence 346779999999999999999999999999999988 78888999999999999999 789999999999999999998
Q ss_pred Ce---Eeeeee-ecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCc---eeeeecccccccEEEEEEcCCCCEEEEEec
Q 010470 342 GY---CVNTII-FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK---LLSEVAAHSLAAVTSISLSRSGNIILTSGR 414 (510)
Q Consensus 342 ~~---~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 414 (510)
+. ....+. +...+.+++|+|++++|++|+.||.|++||+++++ ....+...+...|.+++|+|++++|++++.
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 166 (377)
T 3dwl_C 87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA 166 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES
T ss_pred CCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC
Confidence 77 344443 34569999999999999999999999999999887 366676634489999999999999999999
Q ss_pred CCcEEEEEcCC------------------ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcce--
Q 010470 415 DNLHNLFDIRS------------------LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADI-- 474 (510)
Q Consensus 415 d~~i~i~d~~~------------------~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-- 474 (510)
|+.|++||+.. +.....+ .+.. .+.+++|+|+|++|++++.||.|++||+.+++.
T Consensus 167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~ 241 (377)
T 3dwl_C 167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG----WVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPP 241 (377)
T ss_dssp SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS----SEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCE
T ss_pred CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc----eEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcc
Confidence 99999999852 3344444 3333 355699999999999999999999999999987
Q ss_pred --eecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 475 --VRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 475 --~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
+..+.+|..+|.+++|+|++++|++++.|+.+.+|
T Consensus 242 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 278 (377)
T 3dwl_C 242 RALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQ 278 (377)
T ss_dssp EECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEEC
T ss_pred eeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEE
Confidence 88889999999999999999999999877776444
No 103
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-35 Score=277.34 Aligned_cols=265 Identities=11% Similarity=0.054 Sum_probs=213.7
Q ss_pred EEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcC---------CCCee
Q 010470 232 LFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVN---------SGRVR 302 (510)
Q Consensus 232 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~---------~~~~~ 302 (510)
.+.+++.+|++|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|+.|++|+.. +++.+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 445678899999999999999999998877776 567888889988 9999999999999665 55544
Q ss_pred Eeec-CCCCceEEEEEecC-CCCEEEEEeCCCcEEEEECCCCeEeeeeeec--CceeEEEEcCCCCEEEEecCCCcEEEE
Q 010470 303 HTLT-GHTDKVCAVDVSKI-SSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH--SNCNALAFSMDGQTIFSGHIDGNLRLW 378 (510)
Q Consensus 303 ~~~~-~~~~~v~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~dg~i~i~ 378 (510)
..+. +|.+.|.+++|+|. ++.++++++.||.|++||++++.+......+ ..+.+++|+|+|.+|++|+.||.|++|
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iw 197 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY 197 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 4444 67789999999982 5789999999999999999999887665433 359999999999999999999999999
Q ss_pred ECCCCcee-eeecc-cccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeec---CCCeeecCceeEEEcCCCC
Q 010470 379 DIQTGKLL-SEVAA-HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRA---TGNRVASNWSRSCISPDES 453 (510)
Q Consensus 379 d~~~~~~~-~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~s~~~~ 453 (510)
|+++++.+ ..+.. |. .+|++++|+|+|.+|++++ ++.|++||++++.....+.. +...+.. .+++|+|+|+
T Consensus 198 d~~~~~~~~~~~~~~h~-~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~ 273 (343)
T 3lrv_A 198 NLSSPDQASSRFPVDEE-AKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGT--VTYDIDDSGK 273 (343)
T ss_dssp ESSCTTSCCEECCCCTT-SCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CC--EEEEECTTSS
T ss_pred ECCCCCCCccEEeccCC-CCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccc--eEEEECCCCC
Confidence 99999887 77777 54 8999999999999999999 55999999998876554443 1122211 3589999999
Q ss_pred EEEEEcC-CCeEEEEeCCCcceeecccccCcCEEEEEEeC---CCCcEEEeeCCCeEEEc
Q 010470 454 YVAAGSA-DGSVYIWSISKADIVRTLKEHTAPVLSCSWSG---LGKPLASADKNGVVCVW 509 (510)
Q Consensus 454 ~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~~~dg~i~iw 509 (510)
+|++++. |+.|+||++......... .++..++|+| ++..+++++.||.+.++
T Consensus 274 ~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 274 NMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp EEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred EEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEE
Confidence 9999988 999999998765433222 5677888888 78889988889888765
No 104
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.5e-34 Score=279.75 Aligned_cols=245 Identities=21% Similarity=0.311 Sum_probs=208.6
Q ss_pred ecccccccceeEEEEecC-CCEEEEEeCCCeEEEEEcCC----------CCeeEeecCCCCceEEEEEecCCCCEEEEEe
Q 010470 261 STLYGCLGSVLDLAITHD-NRSVIAASSSNNLYVWDVNS----------GRVRHTLTGHTDKVCAVDVSKISSRHVVSAA 329 (510)
Q Consensus 261 ~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~----------~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~ 329 (510)
.....|.+.|++++|+|+ +.+|++++.+|.|++|++.+ ......+.+|...|++++|+|.+..+|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 345679999999999997 67899999999999999986 5778888999999999999994444999999
Q ss_pred CCCcEEEEECCCCeE-------eeeeeec-CceeEEEEcC-CCCEEEEecCCCcEEEEECCCC---ceeeeecccccccE
Q 010470 330 YDRTLKVWDLHKGYC-------VNTIIFH-SNCNALAFSM-DGQTIFSGHIDGNLRLWDIQTG---KLLSEVAAHSLAAV 397 (510)
Q Consensus 330 ~dg~i~iwd~~~~~~-------~~~~~~~-~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~i 397 (510)
.||.|++||+.++.. ...+..+ ..+.+++|+| ++.+|++++.||.|++||++++ +.+..+..+. ..|
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~v 280 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT-AEV 280 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS-SCE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC-CCe
Confidence 999999999987432 2333333 4699999999 7889999999999999999987 5666666665 899
Q ss_pred EEEEEcCCCC-EEEEEecCCcEEEEEcCC-ceeeeEeecCCCeeecCceeEEEcCCCC-EEEEEcCCCeEEEEeCCC---
Q 010470 398 TSISLSRSGN-IILTSGRDNLHNLFDIRS-LEVCGSLRATGNRVASNWSRSCISPDES-YVAAGSADGSVYIWSISK--- 471 (510)
Q Consensus 398 ~~i~~~~~~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~--- 471 (510)
++++|+|++. ++++++.||.|++||+++ ...+..+..+...+. +++|+|++. +|++++.||.|+|||+..
T Consensus 281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~----~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~ 356 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIF----QVQWSPHNETILASSGTDRRLHVWDLSKIGE 356 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEE----EEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEE----EEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence 9999999987 688999999999999997 556777776665554 499999985 699999999999999987
Q ss_pred -----------cceeecccccCcCEEEEEEeCCCC-cEEEeeCCCeEEEcC
Q 010470 472 -----------ADIVRTLKEHTAPVLSCSWSGLGK-PLASADKNGVVCVWT 510 (510)
Q Consensus 472 -----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd 510 (510)
...+..+.+|...|.+++|+|+++ +|++++.||.|++|+
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 357 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp CCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred ccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 356677788999999999999999 899999999999995
No 105
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-35 Score=290.73 Aligned_cols=265 Identities=15% Similarity=0.191 Sum_probs=218.3
Q ss_pred EEecCCCEEEEeeCCCeEEEEeCCCCcceecc-cccccceeEEEEec-CCCEEEEEeCCCeEEEEEcCC---CC---eeE
Q 010470 232 LFEYNSARLISGGQDKSIKLWDTNTGSLSSTL-YGCLGSVLDLAITH-DNRSVIAASSSNNLYVWDVNS---GR---VRH 303 (510)
Q Consensus 232 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~---~~---~~~ 303 (510)
.|+|++..+++++ .|+ .+++.+..+ .+|.+.|++++|+| ++.+|++|+.||.|++||+.+ +. ...
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 3677888777765 388 457777888 88999999999999 999999999999999999976 43 233
Q ss_pred eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECC---CCeEeeeeee-------------cCceeEEE--EcCCCCE
Q 010470 304 TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH---KGYCVNTIIF-------------HSNCNALA--FSMDGQT 365 (510)
Q Consensus 304 ~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~-------------~~~i~~i~--~~~~~~~ 365 (510)
.+ .|...|.+++|+| ++.+|++++.||.|++||+. ++........ ...+.++. ++|++.+
T Consensus 107 ~~-~h~~~v~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (437)
T 3gre_A 107 TY-DCSSTVTQITMIP-NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSL 184 (437)
T ss_dssp EE-ECSSCEEEEEECT-TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEE
T ss_pred ec-cCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCE
Confidence 33 4999999999999 88999999999999999994 4544433321 22355555 5678999
Q ss_pred EEEecCCCcEEEEECCCCceeeeeccc-ccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEee-cCCCeeecCc
Q 010470 366 IFSGHIDGNLRLWDIQTGKLLSEVAAH-SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLR-ATGNRVASNW 443 (510)
Q Consensus 366 l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~ 443 (510)
|++|+.||.|++||+++++.+..+..+ +...|++++|+|++.+|++++.||.|++||++++..+..+. .+...+
T Consensus 185 l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v---- 260 (437)
T 3gre_A 185 LVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPI---- 260 (437)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEE----
T ss_pred EEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCce----
Confidence 999999999999999999999998873 33899999999999999999999999999999999888876 444333
Q ss_pred eeEEE----cCCCCEEEEEcCCCeEEEEeCCCcceeecccc--------------------------cCcCEEEEEEeCC
Q 010470 444 SRSCI----SPDESYVAAGSADGSVYIWSISKADIVRTLKE--------------------------HTAPVLSCSWSGL 493 (510)
Q Consensus 444 ~~~~~----s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------------------~~~~v~~~~~~~~ 493 (510)
.++++ +|++.+|++|+.||.|++||+.+++.+..+.+ |...|++++|+ +
T Consensus 261 ~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~ 339 (437)
T 3gre_A 261 THVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-N 339 (437)
T ss_dssp EEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-T
T ss_pred EEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-C
Confidence 34644 45788999999999999999998886655543 55678899999 7
Q ss_pred CCcEEEeeCCCeEEEcC
Q 010470 494 GKPLASADKNGVVCVWT 510 (510)
Q Consensus 494 ~~~l~s~~~dg~i~iwd 510 (510)
+++|++|+.||.|++||
T Consensus 340 ~~~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 340 DKILLTDEATSSIVMFS 356 (437)
T ss_dssp TEEEEEEGGGTEEEEEE
T ss_pred ceEEEecCCCCeEEEEE
Confidence 78999999999999996
No 106
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.9e-34 Score=279.96 Aligned_cols=277 Identities=25% Similarity=0.448 Sum_probs=224.2
Q ss_pred HhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccc
Q 010470 188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCL 267 (510)
Q Consensus 188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 267 (510)
.+++++.||.+++|+... ..+...+.+|.+.|.+++| ++++|++|+.||.|++||+.+++.+..+.+|.
T Consensus 145 ~l~~g~~dg~i~iwd~~~---------~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~ 213 (435)
T 1p22_A 145 KIVSGLRDNTIKIWDKNT---------LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHC 213 (435)
T ss_dssp EEEEEESSSCEEEEESSS---------CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCC
T ss_pred EEEEEeCCCeEEEEeCCC---------CeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCC
Confidence 456778889999997543 3467788999999999999 78899999999999999999999999999999
Q ss_pred cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCee---EeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 010470 268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR---HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC 344 (510)
Q Consensus 268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 344 (510)
..|.+++|+ +.++++|+.||.|++||+.++... ..+.+|...|.++.| ++.++++|+.||.|++||+.++.+
T Consensus 214 ~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~ 288 (435)
T 1p22_A 214 EAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEF 288 (435)
T ss_dssp SCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTTCCE
T ss_pred CcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEEEECCcCcE
Confidence 999999996 458999999999999999987755 677899999999998 468999999999999999999999
Q ss_pred eeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEc
Q 010470 345 VNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDI 423 (510)
Q Consensus 345 ~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~ 423 (510)
+..+..+ ..+.++.+ ++.++++|+.||.|++||+++++.+..+..+. ..|.++.| ++.+|++++.||.|++||+
T Consensus 289 ~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~--~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 289 VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE-ELVRCIRF--DNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp EEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCS-SCEEEEEC--CSSEEEEEETTSCEEEEEH
T ss_pred EEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCc-CcEEEEEe--cCCEEEEEeCCCcEEEEEC
Confidence 9988866 45888888 57899999999999999999999999998877 89999998 7899999999999999999
Q ss_pred CCce---------eeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeC
Q 010470 424 RSLE---------VCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 492 (510)
Q Consensus 424 ~~~~---------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 492 (510)
.++. ....+..+...+.. ++| ++.+|++|+.||.|++||+.+........ ...+..++.|.+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~h~~~v~~----l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~ 434 (435)
T 1p22_A 364 VAALDPRAPAGTLCLRTLVEHSGRVFR----LQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEP-PRSPSRTYTYIS 434 (435)
T ss_dssp HHHTSTTSCTTTTEEEEECCCSSCCCC----EEE--CSSCEEECCSSSEEEEEC------------------------
T ss_pred CCCCCccccccchheeeccCCCCCeEE----EEe--CCCEEEEEeCCCEEEEEECCCCCCcccCC-CCCCccceeeec
Confidence 8765 67777777665544 667 78999999999999999998876544433 233455555543
No 107
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.9e-34 Score=275.98 Aligned_cols=316 Identities=19% Similarity=0.263 Sum_probs=221.8
Q ss_pred HHhhhhcCCceEEecccccccccccCCC----ccceeeccccccceEEEEEec-CCCEEEEeeCCCeEEEEeCCCCccee
Q 010470 187 EKLAKQQVDGVVRRSEEGAEFFAESTVP----STCKHKINAHEGGCASILFEY-NSARLISGGQDKSIKLWDTNTGSLSS 261 (510)
Q Consensus 187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~ 261 (510)
..+++++.||.+++|+............ ........+|.+.|.+++|+| ++.+|++++.||.|++||+.++....
T Consensus 57 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 136 (408)
T 4a11_B 57 RYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTAD 136 (408)
T ss_dssp CEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccce
Confidence 4467788899999998554211100000 000112246999999999999 78899999999999999999988877
Q ss_pred cccccccceeEEEEecCC---CEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEE
Q 010470 262 TLYGCLGSVLDLAITHDN---RSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD 338 (510)
Q Consensus 262 ~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd 338 (510)
.+. +...+.++.|+|.+ .++++++.+|.|++||+.+++....+.+|...|.+++|+|.+..++++++.||.|++||
T Consensus 137 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d 215 (408)
T 4a11_B 137 VFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWD 215 (408)
T ss_dssp EEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred ecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEE
Confidence 665 67889999999854 49999999999999999999999999999999999999994444799999999999999
Q ss_pred CCCCe-Eeeee----------------eecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccc----cccE
Q 010470 339 LHKGY-CVNTI----------------IFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS----LAAV 397 (510)
Q Consensus 339 ~~~~~-~~~~~----------------~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~i 397 (510)
++++. ++..+ .....+.+++|+|++.+|++++.||.|++||+.+++....+..+. ...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 295 (408)
T 4a11_B 216 VRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGL 295 (408)
T ss_dssp TTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCC
T ss_pred CCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccc
Confidence 98765 33332 223459999999999999999999999999999887655443221 1122
Q ss_pred EEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeec
Q 010470 398 TSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRT 477 (510)
Q Consensus 398 ~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 477 (510)
........+..+++++.++.|++||+.+++.+..+..+...+.. ++|+|++++|++|+.||.|++||+.+++.+..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~----~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 296 KFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDC----CVFQSNFQELYSGSRDCNILAWVPSLYEPVPD 371 (408)
T ss_dssp CCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEE----EEEETTTTEEEEEETTSCEEEEEECC------
T ss_pred eeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEE----EEEcCCCCEEEEECCCCeEEEEeCCCCCccCC
Confidence 22233344566777788999999999999999999887766554 99999999999999999999999999888766
Q ss_pred ccccCcCEEEEEEeC-CCCcEEEeeCCCeEEEcC
Q 010470 478 LKEHTAPVLSCSWSG-LGKPLASADKNGVVCVWT 510 (510)
Q Consensus 478 ~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd 510 (510)
...+... ..+.| ....+.+++.++.+++|+
T Consensus 372 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~W~ 402 (408)
T 4a11_B 372 DDETTTK---SQLNPAFEDAWSSSDEEGGTSAWS 402 (408)
T ss_dssp ----------------------------------
T ss_pred CCceEec---cccccccceeecccCccCceeecC
Confidence 5443322 23333 233556677899999995
No 108
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=9.4e-33 Score=265.57 Aligned_cols=276 Identities=16% Similarity=0.214 Sum_probs=231.8
Q ss_pred hhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEE-EEeeCCCeEEEEeCCCCcceecccccc
Q 010470 189 LAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARL-ISGGQDKSIKLWDTNTGSLSSTLYGCL 267 (510)
Q Consensus 189 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~ 267 (510)
++.++.|+.+++|+... .++...+.+|. .+.+++|+|+|+++ ++++.|+.|++||+.+++.+..+..+.
T Consensus 5 ~vs~~~d~~v~v~d~~~---------~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~ 74 (391)
T 1l0q_A 5 YIANSESDNISVIDVTS---------NKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS 74 (391)
T ss_dssp EEEETTTTEEEEEETTT---------TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred EEEcCCCCEEEEEECCC---------CeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC
Confidence 35567889999998543 23555666665 48999999999977 677789999999999999888776655
Q ss_pred cceeEEEEecCCCEEEEEe-CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEE-EEEeCCCcEEEEECCCCeEe
Q 010470 268 GSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHV-VSAAYDRTLKVWDLHKGYCV 345 (510)
Q Consensus 268 ~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~ 345 (510)
.+.+++|+|+++++++++ .++.|++||+.+++.+..+..+ ..+.+++|+| ++..+ ++++.++.|++||+.+++.+
T Consensus 75 -~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~ 151 (391)
T 1l0q_A 75 -SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVI 151 (391)
T ss_dssp -SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred -CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 899999999999886655 6799999999999988887754 5689999999 66655 78888999999999999999
Q ss_pred eeeeecCceeEEEEcCCCCEE-EEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEe---cCCcEEEE
Q 010470 346 NTIIFHSNCNALAFSMDGQTI-FSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG---RDNLHNLF 421 (510)
Q Consensus 346 ~~~~~~~~i~~i~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~d~~i~i~ 421 (510)
..+..+..+.+++|+|+++.+ ++++.+|.|++||+++++....+..+ ..+.+++|+|+|+++++++ .++.|++|
T Consensus 152 ~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~ 229 (391)
T 1l0q_A 152 NTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE--AAPSGIAVNPEGTKAYVTNVDKYFNTVSMI 229 (391)
T ss_dssp EEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS--SEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred EEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecC--CCccceEECCCCCEEEEEecCcCCCcEEEE
Confidence 998888889999999999987 57788999999999999888777654 6899999999999999888 68999999
Q ss_pred EcCCceeeeEeecCCCeeecCceeEEEcCCCCEE-EEEcCCCeEEEEeCCCcceeecccccCcC
Q 010470 422 DIRSLEVCGSLRATGNRVASNWSRSCISPDESYV-AAGSADGSVYIWSISKADIVRTLKEHTAP 484 (510)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 484 (510)
|+.+++.+..+..+... ..++|+|+|++| ++++.|+.|++||+.+++.+..+..|..+
T Consensus 230 d~~~~~~~~~~~~~~~~-----~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~ 288 (391)
T 1l0q_A 230 DTGTNKITARIPVGPDP-----AGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNP 288 (391)
T ss_dssp ETTTTEEEEEEECCSSE-----EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred ECCCCeEEEEEecCCCc-----cEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence 99999888887765432 348999999987 67788999999999999988887665543
No 109
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=8e-34 Score=276.20 Aligned_cols=250 Identities=20% Similarity=0.318 Sum_probs=213.7
Q ss_pred eeeccccccceEEEEEecC-CCEEEEeeCCCeEEEEeCCC----------CcceecccccccceeEEEEecCCC-EEEEE
Q 010470 218 KHKINAHEGGCASILFEYN-SARLISGGQDKSIKLWDTNT----------GSLSSTLYGCLGSVLDLAITHDNR-SVIAA 285 (510)
Q Consensus 218 ~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~ 285 (510)
.....+|.+.|++++|+|+ +.+|++++.||.|++|++.+ ......+.+|...|++++|+|++. +|++|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence 3456789999999999997 78999999999999999976 566777889999999999999998 99999
Q ss_pred eCCCeEEEEEcCCCCe-------eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC---eEeeeeeec-Cce
Q 010470 286 SSSNNLYVWDVNSGRV-------RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG---YCVNTIIFH-SNC 354 (510)
Q Consensus 286 ~~d~~i~iwd~~~~~~-------~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~-~~i 354 (510)
+.||.|++|++.++.. ...+.+|...|.+++|+|.++.+|++++.||.|++||++++ ..+..+..+ ..+
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 9999999999987432 45677899999999999977889999999999999999977 455566444 569
Q ss_pred eEEEEcCCCC-EEEEecCCCcEEEEECCC-CceeeeecccccccEEEEEEcCCCC-EEEEEecCCcEEEEEcCC------
Q 010470 355 NALAFSMDGQ-TIFSGHIDGNLRLWDIQT-GKLLSEVAAHSLAAVTSISLSRSGN-IILTSGRDNLHNLFDIRS------ 425 (510)
Q Consensus 355 ~~i~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~i~d~~~------ 425 (510)
++++|+|++. ++++|+.||.|++||+++ +.++..+..+. ..|.+++|+|++. +|++++.|+.|++||+..
T Consensus 281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~-~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 359 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK-DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCS-SCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCC-CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence 9999999887 688999999999999998 55677777766 8999999999985 689999999999999987
Q ss_pred --------ceeeeEeecCCCeeecCceeEEEcCCCC-EEEEEcCCCeEEEEeCCCc
Q 010470 426 --------LEVCGSLRATGNRVASNWSRSCISPDES-YVAAGSADGSVYIWSISKA 472 (510)
Q Consensus 426 --------~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~ 472 (510)
...+..+.++...+ ..++|+|++. +|++++.||.|+||++...
T Consensus 360 ~~~~~~~~~~~~~~~~~h~~~v----~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 360 TEDAEDGPPELLFIHGGHTAKI----SDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHHHHHCCTTEEEECCCCSSCE----EEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccccccCCcceEEEcCCCCCCc----eEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 24445555555444 4599999999 8999999999999998754
No 110
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=7.3e-33 Score=266.35 Aligned_cols=262 Identities=16% Similarity=0.187 Sum_probs=225.6
Q ss_pred CEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEE-EEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEE
Q 010470 238 ARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSV-IAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVD 316 (510)
Q Consensus 238 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~ 316 (510)
..+++++.|+.|++||+.+++.+..+..|. .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+. .+.+++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~ 80 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA 80 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence 367889999999999999999888887664 58999999999987 566689999999999999988887655 899999
Q ss_pred EecCCCCEE-EEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEE-EEecCCCcEEEEECCCCceeeeeccccc
Q 010470 317 VSKISSRHV-VSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTI-FSGHIDGNLRLWDIQTGKLLSEVAAHSL 394 (510)
Q Consensus 317 ~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 394 (510)
|+| ++.++ ++++.++.|++||+.+++.+..+..+..+.+++|+|+|+.+ ++++.++.|++||+.+++.+..+..+
T Consensus 81 ~sp-dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-- 157 (391)
T 1l0q_A 81 VSP-DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-- 157 (391)
T ss_dssp ECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC--
T ss_pred ECC-CCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC--
Confidence 999 66655 55666799999999999999988888889999999999977 68888999999999999988887765
Q ss_pred ccEEEEEEcCCCCEE-EEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEc---CCCeEEEEeCC
Q 010470 395 AAVTSISLSRSGNII-LTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGS---ADGSVYIWSIS 470 (510)
Q Consensus 395 ~~i~~i~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~---~dg~i~iwd~~ 470 (510)
..+.+++|+|+++++ ++++.++.|++||+++++....+.... . +..++|+|+|++|++++ .++.|++||+.
T Consensus 158 ~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~----~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~ 232 (391)
T 1l0q_A 158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA-A----PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG 232 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-E----EEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCC-C----ccceEECCCCCEEEEEecCcCCCcEEEEECC
Confidence 567999999999987 567788999999999998877776433 2 34489999999999888 68999999999
Q ss_pred CcceeecccccCcCEEEEEEeCCCCcE-EEeeCCCeEEEcC
Q 010470 471 KADIVRTLKEHTAPVLSCSWSGLGKPL-ASADKNGVVCVWT 510 (510)
Q Consensus 471 ~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~iwd 510 (510)
+++.+..+..|. .+.+++|+|+|++| ++++.|+.|++||
T Consensus 233 ~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d 272 (391)
T 1l0q_A 233 TNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVID 272 (391)
T ss_dssp TTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence 999888887765 57899999999977 6778899999996
No 111
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.7e-32 Score=254.44 Aligned_cols=263 Identities=22% Similarity=0.319 Sum_probs=220.6
Q ss_pred cCCceEEecccccccccccCCCcccee--eccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccce
Q 010470 193 QVDGVVRRSEEGAEFFAESTVPSTCKH--KINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSV 270 (510)
Q Consensus 193 ~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 270 (510)
+.|+.+++|+... .++.. .+.+|...|++++|+|+|++|++|+.||+|++||+.+++.+..+.+|...+
T Consensus 42 g~D~tV~iWd~~t---------g~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~ 112 (318)
T 4ggc_A 42 ALDNSVYLWSASS---------GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV 112 (318)
T ss_dssp EETTEEEEEETTT---------CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred EeCCEEEEEECCC---------CCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceE
Confidence 4588999998543 22333 456788899999999999999999999999999999999999999999888
Q ss_pred eEEEEecCCCEEEEEeCCCeEEEEEcCCCC-eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeee--
Q 010470 271 LDLAITHDNRSVIAASSSNNLYVWDVNSGR-VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT-- 347 (510)
Q Consensus 271 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-- 347 (510)
.++.+ ++..+++++.++.+.+|+...+. .+..+.+|...+..+.+.+ .+.++++++.||.|++||+.+++....
T Consensus 113 ~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 189 (318)
T 4ggc_A 113 GSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPL 189 (318)
T ss_dssp EEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTTBSCCS
T ss_pred EEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCcccccce
Confidence 76554 57899999999999999987754 6677889999999999998 889999999999999999987653221
Q ss_pred ---eeecCceeEEEEcCCCCEE---EEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEe--cCCcEE
Q 010470 348 ---IIFHSNCNALAFSMDGQTI---FSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG--RDNLHN 419 (510)
Q Consensus 348 ---~~~~~~i~~i~~~~~~~~l---~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--~d~~i~ 419 (510)
......+.++.++|++..+ ++++.++.|++||............. ..+..+.|+|++..+++++ .|+.|+
T Consensus 190 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~sg~~d~~i~ 267 (318)
T 4ggc_A 190 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH--SQVCSILWSPHYKELISGHGFAQNQLV 267 (318)
T ss_dssp EEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECS--SCEEEEEEETTTTEEEEEECTTTCCEE
T ss_pred eeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccce--eeeeeeeecccccceEEEEEcCCCEEE
Confidence 1233568999999976533 46778999999999888877665544 7899999999999887755 789999
Q ss_pred EEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc
Q 010470 420 LFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD 473 (510)
Q Consensus 420 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 473 (510)
+||+++++.+..+.+|...+.. ++|+|+|++|++|+.||+|+|||+....
T Consensus 268 iwd~~~~~~~~~l~gH~~~V~~----l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 268 IWKYPTMAKVAELKGHTSRVLS----LTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEETTTCCEEEEECCCSSCEEE----EEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EEECCCCcEEEEEcCCCCCEEE----EEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 9999999999999988776554 9999999999999999999999987643
No 112
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-34 Score=295.18 Aligned_cols=245 Identities=21% Similarity=0.346 Sum_probs=207.2
Q ss_pred ecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcC--CCCeeEeecCCCCceEEEEEecCC-CCEEEEEeCCCcEEEE
Q 010470 261 STLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVN--SGRVRHTLTGHTDKVCAVDVSKIS-SRHVVSAAYDRTLKVW 337 (510)
Q Consensus 261 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~s~~~dg~i~iw 337 (510)
..+.+|.+.|++++|+|++++|++|+.||.|++||+. ++.....+.+|.++|.+++|+|.. +++|++|+.||.|++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 4577999999999999999999999999999999998 456788899999999999999832 8899999999999999
Q ss_pred ECCCCe--Eeeeeeec-CceeEEEEcCC--CCEEEEecCCCcEEEEECCCCc--eeeeecccccccEEEEEEcC------
Q 010470 338 DLHKGY--CVNTIIFH-SNCNALAFSMD--GQTIFSGHIDGNLRLWDIQTGK--LLSEVAAHSLAAVTSISLSR------ 404 (510)
Q Consensus 338 d~~~~~--~~~~~~~~-~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~i~~i~~~~------ 404 (510)
|+.++. .+..+..+ ..|.+++|+|+ +..+++|+.||.|++||++++. ....+..+. ..|.++.|+|
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~-~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA-IGVNSASWAPATIEED 161 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCS-SCEEEEEECCCC----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCC-CceEEEEecCcccccc
Confidence 999886 45555444 56999999999 9999999999999999998873 333444554 8999999999
Q ss_pred -------CCCEEEEEecCCcEEEEEcCCc----eeeeEeecCCCeeecCceeEEEcCC---CCEEEEEcCCCeEEEEeCC
Q 010470 405 -------SGNIILTSGRDNLHNLFDIRSL----EVCGSLRATGNRVASNWSRSCISPD---ESYVAAGSADGSVYIWSIS 470 (510)
Q Consensus 405 -------~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~---~~~l~~~~~dg~i~iwd~~ 470 (510)
++.++++++.||.|++||++++ .....+..|...+ .+++|+|+ +.+|++|+.||.|++||+.
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V----~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV----RDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE----EEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcE----EEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 5899999999999999999876 4445555555544 45999999 9999999999999999998
Q ss_pred Ccc-----eeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 471 KAD-----IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 471 ~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
++. .......|...|++++|+|+|.+|++|+.||.|++||
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd 282 (753)
T 3jro_A 238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (753)
T ss_dssp SSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred CCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence 864 3344456889999999999999999999999999996
No 113
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=277.07 Aligned_cols=242 Identities=15% Similarity=0.276 Sum_probs=199.4
Q ss_pred ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC-----------eeEeecCCC------------CceEEEEEecCC
Q 010470 265 GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR-----------VRHTLTGHT------------DKVCAVDVSKIS 321 (510)
Q Consensus 265 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----------~~~~~~~~~------------~~v~~i~~~~~~ 321 (510)
.+.+.|++++|+|++++|++|+.||.|+|||+.++. ....+.+|. ..|.+++|+| +
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~-~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP-Q 104 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC-C
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC-C
Confidence 467899999999999999999999999999999876 577888998 8899999999 5
Q ss_pred C--CEEEEEeCCCcEEEEECCCCeEe---------------------------------------eee-e-ecCceeEEE
Q 010470 322 S--RHVVSAAYDRTLKVWDLHKGYCV---------------------------------------NTI-I-FHSNCNALA 358 (510)
Q Consensus 322 ~--~~l~s~~~dg~i~iwd~~~~~~~---------------------------------------~~~-~-~~~~i~~i~ 358 (510)
+ ..+++++.||.|++||+.++... ..+ . +...|.+++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 5 78999999999999998764432 111 2 335699999
Q ss_pred EcCCCCEEEEecCCCcEEEEECCC-Cceeee-------ecccccccEEEEEEcCCC-CEEEEEecCCcEEEEEcCCcee-
Q 010470 359 FSMDGQTIFSGHIDGNLRLWDIQT-GKLLSE-------VAAHSLAAVTSISLSRSG-NIILTSGRDNLHNLFDIRSLEV- 428 (510)
Q Consensus 359 ~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~-------~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~~~~~- 428 (510)
|+|++++|++| .||.|++||+++ +..+.. +..+. ..|.+++|+|++ .+|++++.||.|++||++++..
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELT-EVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCC-CCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccC-cceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 99999999999 799999999984 444432 33444 789999999998 9999999999999999998876
Q ss_pred ---eeEeecCCCe--------eecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC-cceeecccccCcC------------
Q 010470 429 ---CGSLRATGNR--------VASNWSRSCISPDESYVAAGSADGSVYIWSISK-ADIVRTLKEHTAP------------ 484 (510)
Q Consensus 429 ---~~~~~~~~~~--------~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~------------ 484 (510)
...+..+..+ ....+.+++|+|+|++|++++. |.|++||+.+ ++++..+.+|...
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 341 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC 341 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccc
Confidence 5666665531 0014556999999999999998 9999999997 8888888887642
Q ss_pred ---EEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 485 ---VLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 485 ---v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+..++|+|++++|++|+.||.|++||
T Consensus 342 i~~~~~~~~s~~~~~l~s~s~dg~v~iwd 370 (447)
T 3dw8_B 342 IFDKFECCWNGSDSVVMTGSYNNFFRMFD 370 (447)
T ss_dssp GGCCCCEEECTTSSEEEEECSTTEEEEEE
T ss_pred cccceEEEECCCCCEEEEeccCCEEEEEE
Confidence 33499999999999999999999996
No 114
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-33 Score=268.66 Aligned_cols=278 Identities=8% Similarity=0.015 Sum_probs=212.6
Q ss_pred HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc
Q 010470 187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC 266 (510)
Q Consensus 187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 266 (510)
..+++++.|++++ + +. ....+++|.+.|.+++|+|+| .++.+.+|+.... ....+ .|
T Consensus 28 ~~iASas~D~TV~--d-~~-----------~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~-~~~~~-~~ 84 (588)
T 2j04_A 28 TLYLTTFPDISIG--Q-PK-----------YAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQN-GLLNS-QP 84 (588)
T ss_dssp CEEEECSSSEEEE--E-EC-----------CCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS-CSSTT-SC
T ss_pred CEEEEEcCCceee--c-cc-----------ccceecCCCccEEEEEECCCC-------CcceEEEEeCCCc-eEeec-CC
Confidence 4466777777777 2 11 113347999999999999998 4666666654422 22233 45
Q ss_pred ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCC-----ceEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 010470 267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTD-----KVCAVDVSKISSRHVVSAAYDRTLKVWDLHK 341 (510)
Q Consensus 267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~ 341 (510)
...|.+++|+|+|.+|++++.||.|++||..+ ++..+. |.. .|.+++|+| ++++|++|+.||+|++||+.+
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd~~~ 160 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFSIRK 160 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEECCC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcC-CCCEEEEEcCCCEEEEEECCC
Confidence 88999999999999999999999999999544 666666 665 499999999 899999999999999999998
Q ss_pred Ce-------Eeeeeeec-----CceeEEEEcCCCCEEEEecCCCcEEEEECCCCce---eeeecccccccEEEEEEcCCC
Q 010470 342 GY-------CVNTIIFH-----SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL---LSEVAAHSLAAVTSISLSRSG 406 (510)
Q Consensus 342 ~~-------~~~~~~~~-----~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~i~~i~~~~~~ 406 (510)
+. .+.++..+ ..|.+++|+|+| +++++.|+.|++||+..+.. ...+..++...|.+++|+ |
T Consensus 161 ~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g 236 (588)
T 2j04_A 161 NSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D 236 (588)
T ss_dssp CTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T
T ss_pred CccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--C
Confidence 75 24555332 369999999999 78888899999999987773 245543333789999999 6
Q ss_pred CEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEE--cCCCCEEEEEcCCCeEEEEeCCC------c------
Q 010470 407 NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCI--SPDESYVAAGSADGSVYIWSISK------A------ 472 (510)
Q Consensus 407 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~l~~~~~dg~i~iwd~~~------~------ 472 (510)
..+++++ ++.|++||+.++.......+|...+. .+.| +|++..|++++.||+ ++|..+. +
T Consensus 237 ~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~----~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~ 310 (588)
T 2j04_A 237 YKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFH----IIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYL 310 (588)
T ss_dssp TEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCC----EEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHH
T ss_pred CEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEE----EEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEc
Confidence 8888887 69999999998877444335555444 4899 999999999999999 9998631 1
Q ss_pred -----------ceeecccccCcCEEEEEEeCCCCcEEEeeC
Q 010470 473 -----------DIVRTLKEHTAPVLSCSWSGLGKPLASADK 502 (510)
Q Consensus 473 -----------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 502 (510)
..+..+. +...|.+++|+|||+.+|+++.
T Consensus 311 d~~v~lW~~~g~~l~~~~-~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 311 EKKFKKWSTIWNEFNNYE-TTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp HHHHHHTTTTTTSSSSSC-CEEEEEEEEECTTSSEEEEEEE
T ss_pred CCEEEEEECCCCceeeec-cceEEEEEEECCCCCEEEEEEe
Confidence 1122222 2445999999999999998763
No 115
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.6e-33 Score=265.92 Aligned_cols=268 Identities=14% Similarity=0.178 Sum_probs=204.1
Q ss_pred CceEEeccccccccc-ccCCCccceeeccccccceEEEEEecCCCEEEEe-----------eCCCeEEEEeCCCCccee-
Q 010470 195 DGVVRRSEEGAEFFA-ESTVPSTCKHKINAHEGGCASILFEYNSARLISG-----------GQDKSIKLWDTNTGSLSS- 261 (510)
Q Consensus 195 d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-----------~~dg~i~iwd~~~~~~~~- 261 (510)
++.+++|+....... ...+.......+.+|...|.+++++ ++.+++| +.|+.+++|++.+.....
T Consensus 42 ~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~ 119 (365)
T 4h5i_A 42 PNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLE 119 (365)
T ss_dssp CEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEE
T ss_pred CCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEE
Confidence 445788874332110 0111122334678899999988776 4566665 457789999986543211
Q ss_pred --------cccccccceeEEEEecCCCEEEEEe--CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCC
Q 010470 262 --------TLYGCLGSVLDLAITHDNRSVIAAS--SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD 331 (510)
Q Consensus 262 --------~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d 331 (510)
....+...+.+++|+|||+++++++ .|++|+|||+.+++.+..+. |...|.+++|+| ++.++++++ +
T Consensus 120 ~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s-~ 196 (365)
T 4h5i_A 120 FLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYIT-G 196 (365)
T ss_dssp EEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEEC-S
T ss_pred EeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEecc-c
Confidence 1123455688999999999987665 68999999999999988886 778899999999 889999988 5
Q ss_pred CcEEEEECCCCeEeeeeee--c-CceeEEEEcCCCCEEEEecCCC----cEEEEECCCCce----eeeecccccccEEEE
Q 010470 332 RTLKVWDLHKGYCVNTIIF--H-SNCNALAFSMDGQTIFSGHIDG----NLRLWDIQTGKL----LSEVAAHSLAAVTSI 400 (510)
Q Consensus 332 g~i~iwd~~~~~~~~~~~~--~-~~i~~i~~~~~~~~l~~~~~dg----~i~i~d~~~~~~----~~~~~~~~~~~i~~i 400 (510)
+.+.+|+..++..+..... + ..+.+++|+|++..+++++.++ .+++||+..+.. ...+..+. .+|+++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~V~~~ 275 (365)
T 4h5i_A 197 SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRF-KGITSM 275 (365)
T ss_dssp SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSC-SCEEEE
T ss_pred eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCC-CCeEeE
Confidence 5677777777766544322 2 3489999999999999998777 588899876643 23444554 789999
Q ss_pred EEcCCCCEEEEEecCCcEEEEEcCCceeeeEe-ecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc
Q 010470 401 SLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL-RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA 472 (510)
Q Consensus 401 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 472 (510)
+|+|+|++|++|+.|+.|+|||+.+++.+..+ .+|...+.. ++|+|||++|++|+.|++|+||++...
T Consensus 276 ~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~----v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 276 DVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITE----VTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEE----EEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEE----EEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999999999999999988875 567666554 999999999999999999999999653
No 116
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=5.3e-33 Score=262.14 Aligned_cols=239 Identities=12% Similarity=0.089 Sum_probs=203.9
Q ss_pred cccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC---eeEeecCCCCceEEEEEecCCCC-EEEEEeCCCcEEEE
Q 010470 262 TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR---VRHTLTGHTDKVCAVDVSKISSR-HVVSAAYDRTLKVW 337 (510)
Q Consensus 262 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~i~~~~~~~~-~l~s~~~dg~i~iw 337 (510)
...+|.+.|++++|+|++.+|++++.||.|++|++.++. ....+.+|...|.+++|+| ++. +|++++.||.|++|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-SSSEEEEEEETTSCEEEE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECC-CCCcEEEEEcCCCeEEEE
Confidence 345899999999999999999999999999999999887 3455568999999999999 788 99999999999999
Q ss_pred EC-CCCeEeeeee--ecCceeEEEEcCCCCEEEEecCCCcEEEEECCC---------CceeeeecccccccEEEEEEcCC
Q 010470 338 DL-HKGYCVNTII--FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQT---------GKLLSEVAAHSLAAVTSISLSRS 405 (510)
Q Consensus 338 d~-~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~~i~~i~~~~~ 405 (510)
|+ .++....... +...+.+++|+| +..+++++.||.|++||+++ ++++..+. +. ..+.+++|+|+
T Consensus 85 d~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~-~~v~~~~~~~~ 161 (342)
T 1yfq_A 85 DLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VK-NKIFTMDTNSS 161 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SC-CCEEEEEECSS
T ss_pred EeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eC-CceEEEEecCC
Confidence 99 8776643333 446699999999 99999999999999999987 76666666 33 89999999998
Q ss_pred CCEEEEEecCCcEEEEEcCC-ceee--eEeecCCCeeecCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCc------cee
Q 010470 406 GNIILTSGRDNLHNLFDIRS-LEVC--GSLRATGNRVASNWSRSCISP-DESYVAAGSADGSVYIWSISKA------DIV 475 (510)
Q Consensus 406 ~~~l~~~~~d~~i~i~d~~~-~~~~--~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~------~~~ 475 (510)
+ +++++.++.|++||+++ +... .....+.. .+.+++|+| ++++|++++.||.|++|++... +..
T Consensus 162 ~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~----~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~ 235 (342)
T 1yfq_A 162 R--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKY----QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235 (342)
T ss_dssp E--EEEEESTTEEEEEESSCCTTCCCEEEECSCSS----CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred c--EEEEeCCCeEEEEECCccccccceeeecCCCC----ceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccc
Confidence 7 99999999999999987 5432 22222333 345699999 9999999999999999999887 777
Q ss_pred ecccccCc---------CEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 476 RTLKEHTA---------PVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 476 ~~~~~~~~---------~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
..+..|.. +|.+++|+|++++|++++.||.|++||
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd 279 (342)
T 1yfq_A 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN 279 (342)
T ss_dssp EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred eeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEc
Confidence 77777755 999999999999999999999999996
No 117
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=8.8e-34 Score=272.25 Aligned_cols=256 Identities=15% Similarity=0.200 Sum_probs=184.3
Q ss_pred cccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc-----eecccccccceeEEEEec--------CCCEEEEEeCC
Q 010470 222 NAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL-----SSTLYGCLGSVLDLAITH--------DNRSVIAASSS 288 (510)
Q Consensus 222 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~--------~~~~l~~~~~d 288 (510)
..|.+.+....+++++.+|++|+.|++|+|||..++.. +..+.+|.+.|++++|+| |+++|++++.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence 34555566666677788999999999999999988754 456789999999999998 88999999999
Q ss_pred CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee-------------------
Q 010470 289 NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII------------------- 349 (510)
Q Consensus 289 ~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------------- 349 (510)
++|+|||+.++.....+..|..+|.+++|+|.+..+|++++.||+|++||+.++.......
T Consensus 166 ~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~ 245 (393)
T 4gq1_A 166 CTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV 245 (393)
T ss_dssp SEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred CeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence 9999999999888888888999999999999555789999999999999998876433221
Q ss_pred -------ecCceeEEEEc-CCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEE
Q 010470 350 -------FHSNCNALAFS-MDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLF 421 (510)
Q Consensus 350 -------~~~~i~~i~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~ 421 (510)
....+.++.|+ |+|..|++++.|+.+++||+..+.....+..+. ..+..+.+.|++..+..
T Consensus 246 ~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~---------- 314 (393)
T 4gq1_A 246 NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDST-MKLGPKNLLPNVQGISL---------- 314 (393)
T ss_dssp ------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECS----------
T ss_pred eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeec-CccccEEEccccccccc----------
Confidence 11346788876 799999999999999999999888777776655 56666666665332211
Q ss_pred EcCCceeeeEeecCCCeeecCceeEEEcC--CCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEE
Q 010470 422 DIRSLEVCGSLRATGNRVASNWSRSCISP--DESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLAS 499 (510)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 499 (510)
...... ..++| ++.++++|+.||.|++||+.++.....+..|..+|.+++|+|||++|++
T Consensus 315 -------------~~~~~~-----~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~ 376 (393)
T 4gq1_A 315 -------------FPSLLG-----ACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAI 376 (393)
T ss_dssp -------------SCCSSC-----CEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEE
T ss_pred -------------cCccee-----EEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEE
Confidence 111111 23333 5567888999999999999999998888889999999999999999999
Q ss_pred eeCCCeE
Q 010470 500 ADKNGVV 506 (510)
Q Consensus 500 ~~~dg~i 506 (510)
++.+|.+
T Consensus 377 as~~Gv~ 383 (393)
T 4gq1_A 377 ATEGSVL 383 (393)
T ss_dssp EESSEEE
T ss_pred EeCCCeE
Confidence 9988764
No 118
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.7e-31 Score=252.84 Aligned_cols=252 Identities=18% Similarity=0.229 Sum_probs=210.6
Q ss_pred EeCCCCcceecccccccceeEEEEecC---CCEEEEEeCCCeEEEEEcCC-CCee-EeecCCCCceEEEEEecCCCCEEE
Q 010470 252 WDTNTGSLSSTLYGCLGSVLDLAITHD---NRSVIAASSSNNLYVWDVNS-GRVR-HTLTGHTDKVCAVDVSKISSRHVV 326 (510)
Q Consensus 252 wd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~-~~~~-~~~~~~~~~v~~i~~~~~~~~~l~ 326 (510)
|+....+.+..+.+|.+.|++++|+|+ |++|++++.||.|++||+.+ +... ..+.+|...|.+++|+| ++.+|+
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~ 102 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD-DGSKVF 102 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT-TSSEEE
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc-CCCEEE
Confidence 455666777888999999999999999 59999999999999999997 5544 77889999999999999 889999
Q ss_pred EEeCCCcEEEEECCCCeEeeeeeecCceeEEEE--cCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcC
Q 010470 327 SAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAF--SMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSR 404 (510)
Q Consensus 327 s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~ 404 (510)
+++.||.|++||+.++..+....+...+.+++| +|++.+|++++.||.|++||+++++.+..+..+ ..+.++.+.
T Consensus 103 s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~~- 179 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP--ERCYCADVI- 179 (368)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS--SCEEEEEEE-
T ss_pred EEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC--CCceEEEec-
Confidence 999999999999999998887777788999999 899999999999999999999999988888876 466666665
Q ss_pred CCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCE----EEEEcCCCeEEEEeCCCc---ceeec
Q 010470 405 SGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESY----VAAGSADGSVYIWSISKA---DIVRT 477 (510)
Q Consensus 405 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~----l~~~~~dg~i~iwd~~~~---~~~~~ 477 (510)
+..+++++.++.+.+|+++............ .......+++.+++.. +++++.||.|++|++... ..+..
T Consensus 180 -~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~ 256 (368)
T 3mmy_A 180 -YPMAVVATAERGLIVYQLENQPSEFRRIESP--LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFT 256 (368)
T ss_dssp -TTEEEEEEGGGCEEEEECSSSCEEEEECCCS--CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEE
T ss_pred -CCeeEEEeCCCcEEEEEeccccchhhhcccc--ccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcccccee
Confidence 4588899999999999998765433322211 1122233555554443 999999999999999887 55667
Q ss_pred ccccCc------------CEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 478 LKEHTA------------PVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 478 ~~~~~~------------~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+..|.. +|++++|+|++++|++++.||.|++||
T Consensus 257 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd 301 (368)
T 3mmy_A 257 FKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWD 301 (368)
T ss_dssp EECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred eeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEE
Confidence 777765 799999999999999999999999996
No 119
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.3e-31 Score=253.46 Aligned_cols=244 Identities=15% Similarity=0.162 Sum_probs=186.1
Q ss_pred EEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeC
Q 010470 251 LWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY 330 (510)
Q Consensus 251 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~ 330 (510)
||++.+..++.....|...|.+++|+|||++|++|+.++ +++|++.+++....... ..+..+.+.+..+..+++++.
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGV 79 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECC
Confidence 566777777777889999999999999999999888775 78999988766555432 247778888833344467888
Q ss_pred CCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCC-ceeeeecccccccEEEEEEcCCCCEE
Q 010470 331 DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTG-KLLSEVAAHSLAAVTSISLSRSGNII 409 (510)
Q Consensus 331 dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l 409 (510)
|+.|++||+.+++++..+..+..+.++.++++. ++++ .++.|++||+.++ +.+..+.. +...+++++ .++
T Consensus 80 d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~--~~l 150 (355)
T 3vu4_A 80 KEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR----FGGVCEFSN--GLL 150 (355)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE----EEEEEEEET--TEE
T ss_pred ccEEEEEECCCCcEEEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc----CCceEEEEc--cEE
Confidence 899999999999999999888889999998764 3433 3689999999988 66665554 344456666 566
Q ss_pred EE--EecCCcEEEEEcCCce---------------e-eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCe-EEEEeCC
Q 010470 410 LT--SGRDNLHNLFDIRSLE---------------V-CGSLRATGNRVASNWSRSCISPDESYVAAGSADGS-VYIWSIS 470 (510)
Q Consensus 410 ~~--~~~d~~i~i~d~~~~~---------------~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~-i~iwd~~ 470 (510)
++ |+.+|.|++||+.++. + ...+.+|...+. +++|+|+|++|++|+.||+ |++||+.
T Consensus 151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~----~~~~s~~g~~l~s~s~d~~~v~iwd~~ 226 (355)
T 3vu4_A 151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIK----MVRLNRKSDMVATCSQDGTIIRVFKTE 226 (355)
T ss_dssp EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEE----EEEECTTSSEEEEEETTCSEEEEEETT
T ss_pred EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceE----EEEECCCCCEEEEEeCCCCEEEEEECC
Confidence 65 6889999999999765 1 566666666554 4999999999999999998 9999999
Q ss_pred Ccceeeccc-c-cCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 471 KADIVRTLK-E-HTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 471 ~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+++.+..+. + |..+|.+++|+|+|++|++++.||.|++||
T Consensus 227 ~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~ 268 (355)
T 3vu4_A 227 DGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFE 268 (355)
T ss_dssp TCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred CCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEE
Confidence 999999998 5 999999999999999999999999999996
No 120
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=3.7e-31 Score=238.61 Aligned_cols=283 Identities=16% Similarity=0.243 Sum_probs=201.1
Q ss_pred ceeecccccc----ceEEEEEecCCC---EEEEeeCCCeEEEEeCCCC---cceecccccccceeEEEEecCCCEEEEEe
Q 010470 217 CKHKINAHEG----GCASILFEYNSA---RLISGGQDKSIKLWDTNTG---SLSSTLYGCLGSVLDLAITHDNRSVIAAS 286 (510)
Q Consensus 217 ~~~~~~~h~~----~v~~~~~s~~~~---~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 286 (510)
.+.+++...+ .+.++-|-..|- .+++++ ...|++|+..++ +.+.++.+|..+|..+.+.||...|++..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 105 (356)
T 2w18_A 27 LVSELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVA 105 (356)
T ss_dssp EEEEECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEE
T ss_pred eeehhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeee
Confidence 3444544443 356666655443 566666 568999999998 78889999999999999999765544433
Q ss_pred CC----CeEEEEEcCCC----CeeEeecCCCCceEEEEEecCCCCEEEEEe--CCCcEEEEEC-CCCeEeeeeeecC-ce
Q 010470 287 SS----NNLYVWDVNSG----RVRHTLTGHTDKVCAVDVSKISSRHVVSAA--YDRTLKVWDL-HKGYCVNTIIFHS-NC 354 (510)
Q Consensus 287 ~d----~~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~--~dg~i~iwd~-~~~~~~~~~~~~~-~i 354 (510)
-. +.|+..-+... .......+|...|.++ + +++++.+++ .|+.|++|++ .+|+.+..+..++ .+
T Consensus 106 ~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~-~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v 181 (356)
T 2w18_A 106 LGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---T-KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEE 181 (356)
T ss_dssp ECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---T-TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSS
T ss_pred eccccccceEEEEECCCccccccEEEeCCCeEEEEec---C-CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCce
Confidence 21 12221111111 1122223444445443 3 555555543 5999999999 4577777776664 48
Q ss_pred eEEEEcC---CCCEEEEecCCCcEEEEECCCCceeeeecccc--cccEEEEEEcCCCCEE------------EEEecCCc
Q 010470 355 NALAFSM---DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS--LAAVTSISLSRSGNII------------LTSGRDNL 417 (510)
Q Consensus 355 ~~i~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l------------~~~~~d~~ 417 (510)
..++|+| ++..|++|+.|++|++||+.+++.+..+..++ ...+.+++|+|+|.++ ++|+.|++
T Consensus 182 ~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t 261 (356)
T 2w18_A 182 TILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ 261 (356)
T ss_dssp CEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEE
T ss_pred eeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE
Confidence 8899999 78999999999999999999999999997654 2467788999999886 55778999
Q ss_pred EEEEEcCCceeeeEee-----cCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEE-EEEEe
Q 010470 418 HNLFDIRSLEVCGSLR-----ATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVL-SCSWS 491 (510)
Q Consensus 418 i~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~ 491 (510)
|++||..+++.+..+. ++... + +..+.++.++++|+.||+|+|||+.+++.+.++.+|...+. .++|+
T Consensus 262 IklWd~~tgk~l~v~~~~~p~Gh~~~----~--lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafS 335 (356)
T 2w18_A 262 LIVINPKTTLSVGVMLYCLPPGQAGR----F--LEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWS 335 (356)
T ss_dssp EEEEETTTTEEEEEEEECCCTTCCCC----E--EEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEEC
T ss_pred EEEEECCCCEEEEEEEeeccCCCcce----e--EccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEEC
Confidence 9999999998876553 22211 1 33344588999999999999999999999999999887655 58999
Q ss_pred CCCCcEEEeeCCCeEEEcC
Q 010470 492 GLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 492 ~~~~~l~s~~~dg~i~iwd 510 (510)
|||++|++|+.|++|+|||
T Consensus 336 PDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 336 GTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp SSSSEEEEECTTSCEEEEE
T ss_pred CCCCEEEEEECCCcEEEec
Confidence 9999999999999999996
No 121
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.4e-31 Score=252.83 Aligned_cols=282 Identities=15% Similarity=0.171 Sum_probs=206.7
Q ss_pred HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEec--CCCEEEEeeCCCeEEEEeCCCC-------
Q 010470 187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEY--NSARLISGGQDKSIKLWDTNTG------- 257 (510)
Q Consensus 187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~------- 257 (510)
..+++++.||.+++|+.... .........+.+|.+.|++++|+| ++.+|++|+.||.|++||+.++
T Consensus 24 ~~l~~~~~dg~i~iw~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 98 (351)
T 3f3f_A 24 RHVATCSSDQHIKVFKLDKD-----TSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGR 98 (351)
T ss_dssp SEEEEEETTSEEEEEEECSS-----SCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSC
T ss_pred CEEEEeeCCCeEEEEECCCC-----CCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccccc
Confidence 34678889999999985431 122346778889999999999999 6999999999999999999877
Q ss_pred --cceecccccccceeEEEEecC--CCEEEEEeCCCeEEEEEcCCCCeeEeec-------------CCCCceEEEEEecC
Q 010470 258 --SLSSTLYGCLGSVLDLAITHD--NRSVIAASSSNNLYVWDVNSGRVRHTLT-------------GHTDKVCAVDVSKI 320 (510)
Q Consensus 258 --~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------------~~~~~v~~i~~~~~ 320 (510)
+.+..+.+|...|.+++|+|+ +.++++++.||.|++||+.+++.+..+. .|...+.++.|+|.
T Consensus 99 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 178 (351)
T 3f3f_A 99 RWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPS 178 (351)
T ss_dssp SEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCC
T ss_pred CcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccC
Confidence 456778899999999999999 9999999999999999998877554432 67889999999994
Q ss_pred --CCCEEEEEeCCCcEEEEECCCCeE--eeeeeec-CceeEEEEcCCC----CEEEEecCCCcEEEEECCCCceeeeecc
Q 010470 321 --SSRHVVSAAYDRTLKVWDLHKGYC--VNTIIFH-SNCNALAFSMDG----QTIFSGHIDGNLRLWDIQTGKLLSEVAA 391 (510)
Q Consensus 321 --~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~-~~i~~i~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 391 (510)
++..+++++.++.+.+|+...+.. +..+..+ ..|.+++|+|++ .+|++|+.||.|++||++.+........
T Consensus 179 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 258 (351)
T 3f3f_A 179 RFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEE 258 (351)
T ss_dssp SSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------
T ss_pred CCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCC
Confidence 388999999999999998887765 4444444 569999999998 8999999999999999987655444333
Q ss_pred cccccEEEEEEcCCCCEEEEE----ecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEE
Q 010470 392 HSLAAVTSISLSRSGNIILTS----GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIW 467 (510)
Q Consensus 392 ~~~~~i~~i~~~~~~~~l~~~----~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iw 467 (510)
.. ........++....+..+ .....+.+|+......+..+..|...+.. ++|+|++++|++|+.||.|++|
T Consensus 259 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~----~~~s~~~~~l~s~~~dg~v~iw 333 (351)
T 3f3f_A 259 SL-TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWS----VSWNLTGTILSSAGDDGKVRLW 333 (351)
T ss_dssp ---------------------------------CCSEEEEEEEEECTTSSCEEE----EEECSSSCCEEEEETTSCEEEE
T ss_pred cc-cceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEE----EEEcCCCCEEEEecCCCcEEEE
Confidence 22 333334444444443333 33445666666677777777777666554 9999999999999999999999
Q ss_pred eCCCcceeecc
Q 010470 468 SISKADIVRTL 478 (510)
Q Consensus 468 d~~~~~~~~~~ 478 (510)
++.+++.+..+
T Consensus 334 ~~~~~~~~~~~ 344 (351)
T 3f3f_A 334 KATYSNEFKCM 344 (351)
T ss_dssp EECTTSCEEEE
T ss_pred ecCcCcchhhe
Confidence 99987655443
No 122
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-31 Score=257.96 Aligned_cols=236 Identities=15% Similarity=0.163 Sum_probs=198.4
Q ss_pred ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC---eeEeecC------------------------------------
Q 010470 267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR---VRHTLTG------------------------------------ 307 (510)
Q Consensus 267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~------------------------------------ 307 (510)
..++.+++|+|+|++|+++ .++.|++||+.+++ .+..+..
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578899999999965555 57899999999998 6555543
Q ss_pred ------------------CCCceEEEEEecCCCCEE-EEEeCCCcEEEEECC--CCeEeeeeee---cCceeEEEEcCCC
Q 010470 308 ------------------HTDKVCAVDVSKISSRHV-VSAAYDRTLKVWDLH--KGYCVNTIIF---HSNCNALAFSMDG 363 (510)
Q Consensus 308 ------------------~~~~v~~i~~~~~~~~~l-~s~~~dg~i~iwd~~--~~~~~~~~~~---~~~i~~i~~~~~~ 363 (510)
|.+.|.+++|+| ++.+| ++++.||.|++||+. ++..+..+.. ...+.+++|+|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 161 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD 161 (450)
T ss_dssp -----------------CCCCCEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC
Confidence 333799999999 67775 899999999999999 8888777753 3569999999999
Q ss_pred CEEEEecCCCcEEEEECCCCceee----eecccccccEEEEEEcCC---CCEEEEEecCCcEEEEEcCCceeeeEe-ecC
Q 010470 364 QTIFSGHIDGNLRLWDIQTGKLLS----EVAAHSLAAVTSISLSRS---GNIILTSGRDNLHNLFDIRSLEVCGSL-RAT 435 (510)
Q Consensus 364 ~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~~i~~i~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~ 435 (510)
.+|++|+.+|.|++|++.++.... .+..+. ..|.+++|+|+ +.+|++++.|+.|++||++++..+..+ .++
T Consensus 162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h 240 (450)
T 2vdu_B 162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHV-SMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGH 240 (450)
T ss_dssp SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECS-SCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCC
T ss_pred CEEEEEeCCCcEEEEecCCcccccccceeeeccc-CceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCC
Confidence 999999999999999998876543 555555 89999999999 999999999999999999988877663 355
Q ss_pred CCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccc-------------------------cCcCEEEEEE
Q 010470 436 GNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE-------------------------HTAPVLSCSW 490 (510)
Q Consensus 436 ~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------------------~~~~v~~~~~ 490 (510)
...+ .+++|+ ++++|++|+.||.|++||+.+++.+..+.. +...|.+++|
T Consensus 241 ~~~v----~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 315 (450)
T 2vdu_B 241 KHFV----SSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK 315 (450)
T ss_dssp SSCE----EEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred CCce----EEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence 5444 458999 999999999999999999999988777652 2357899999
Q ss_pred eCCCCcEEEee-CCCeEEEcC
Q 010470 491 SGLGKPLASAD-KNGVVCVWT 510 (510)
Q Consensus 491 ~~~~~~l~s~~-~dg~i~iwd 510 (510)
+|++++|++++ .|+.|++|+
T Consensus 316 ~~~~~~l~~~~~~d~~i~iw~ 336 (450)
T 2vdu_B 316 SKNLPFVAFFVEATKCIIILE 336 (450)
T ss_dssp CSSSSEEEEEETTCSEEEEEE
T ss_pred eCCCCEEEEEECCCCeEEEEE
Confidence 99999999988 899999996
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-32 Score=254.52 Aligned_cols=226 Identities=9% Similarity=0.078 Sum_probs=186.0
Q ss_pred EEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECC---------CCeE
Q 010470 274 AITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH---------KGYC 344 (510)
Q Consensus 274 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~---------~~~~ 344 (510)
.+.+++.++++|+.||.|++||+.+++.+..+. ...|.++.++| . +++++.|++|++|+.. ++..
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~-~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~ 116 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHP-A---IISRGPCNRLLLLYPGNQITILDSKTNKV 116 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCC-S---EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCC-c---eEEecCCCeEEEEEccCceEEeecCCcce
Confidence 345678899999999999999999999888776 46677888888 3 9999999999999765 4444
Q ss_pred eeeeeec--CceeEEEEcC--CCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEE
Q 010470 345 VNTIIFH--SNCNALAFSM--DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNL 420 (510)
Q Consensus 345 ~~~~~~~--~~i~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i 420 (510)
+..+... ..+.+++|+| +++++++|+.||.|++||+++++.......++...+.+++|+|+|.+|++|+.||.|++
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i 196 (343)
T 3lrv_A 117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV 196 (343)
T ss_dssp EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 5454433 4599999999 99999999999999999999999877665555468999999999999999999999999
Q ss_pred EEcCCceee-eEeec-CCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccc---cCcCEE--EEEEeCC
Q 010470 421 FDIRSLEVC-GSLRA-TGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE---HTAPVL--SCSWSGL 493 (510)
Q Consensus 421 ~d~~~~~~~-~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~--~~~~~~~ 493 (510)
||+++++.. ..+.. |...+ .+++|+|+|.+|++++ ++.|++||+.+++.+..+.. |...+. +++|+|+
T Consensus 197 wd~~~~~~~~~~~~~~h~~~v----~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (343)
T 3lrv_A 197 YNLSSPDQASSRFPVDEEAKI----KEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDS 271 (343)
T ss_dssp EESSCTTSCCEECCCCTTSCE----EEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTT
T ss_pred EECCCCCCCccEEeccCCCCE----EEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCC
Confidence 999998876 66666 55544 4599999999999999 55999999999887666554 444444 6999999
Q ss_pred CCcEEEeeC-CCeEEEcC
Q 010470 494 GKPLASADK-NGVVCVWT 510 (510)
Q Consensus 494 ~~~l~s~~~-dg~i~iwd 510 (510)
|++|++++. |+.|++|+
T Consensus 272 g~~l~~~s~~d~~i~v~~ 289 (343)
T 3lrv_A 272 GKNMIAYSNESNSLTIYK 289 (343)
T ss_dssp SSEEEEEETTTTEEEEEE
T ss_pred CCEEEEecCCCCcEEEEE
Confidence 999999988 99999994
No 124
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.98 E-value=6.3e-30 Score=254.20 Aligned_cols=304 Identities=12% Similarity=0.098 Sum_probs=237.4
Q ss_pred hhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeC--CCCcceeccccccc
Q 010470 191 KQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDT--NTGSLSSTLYGCLG 268 (510)
Q Consensus 191 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~~ 268 (510)
....++.+.+|+... .++..++..+.. +.+++|+|+|++|++++.|+.|.+||+ .+++.+.++.. ..
T Consensus 154 s~~~d~~V~v~D~~t---------~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~ 222 (543)
T 1nir_A 154 TLRDAGQIALVDGDS---------KKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GI 222 (543)
T ss_dssp EEGGGTEEEEEETTT---------CCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CS
T ss_pred EEcCCCeEEEEECCC---------ceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CC
Confidence 344556666665332 345666663333 889999999999999999999999999 78888887764 55
Q ss_pred ceeEEEEec----CCCEEEEEe-CCCeEEEEEcCCCCeeEeecCC----------C-CceEEEEEecCCCCEEEEEeCCC
Q 010470 269 SVLDLAITH----DNRSVIAAS-SSNNLYVWDVNSGRVRHTLTGH----------T-DKVCAVDVSKISSRHVVSAAYDR 332 (510)
Q Consensus 269 ~v~~~~~~~----~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~----------~-~~v~~i~~~~~~~~~l~s~~~dg 332 (510)
.+..++|+| +|+++++++ .++.|.+||..+++++..+..+ . ..+.++.++|.+..++++...++
T Consensus 223 ~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g 302 (543)
T 1nir_A 223 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG 302 (543)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCC
Confidence 679999999 999999998 4899999999999988887642 2 37889999996667788888899
Q ss_pred cEEEEECCCCeEee--eeeecCceeEEEEcCCCCEEEEe-cCCCcEEEEECCCCceeeeeccc---ccccEEEEEEcCC-
Q 010470 333 TLKVWDLHKGYCVN--TIIFHSNCNALAFSMDGQTIFSG-HIDGNLRLWDIQTGKLLSEVAAH---SLAAVTSISLSRS- 405 (510)
Q Consensus 333 ~i~iwd~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~---~~~~i~~i~~~~~- 405 (510)
.|.+||+.++..+. .+.....+.++.|+|+|++++++ ..+++|.+||+.+++.+..+... +.+....+ ++|+
T Consensus 303 ~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~ 381 (543)
T 1nir_A 303 KVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKY 381 (543)
T ss_dssp EEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTT
T ss_pred eEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCC
Confidence 99999998765444 44444558899999999987654 56889999999999988877642 11222233 4677
Q ss_pred CCEEEEEe-cCCcEEEEEcCC-------ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEc-------CCCeEEEEeCC
Q 010470 406 GNIILTSG-RDNLHNLFDIRS-------LEVCGSLRATGNRVASNWSRSCISPDESYVAAGS-------ADGSVYIWSIS 470 (510)
Q Consensus 406 ~~~l~~~~-~d~~i~i~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-------~dg~i~iwd~~ 470 (510)
+.+++++. .|++|.+||+.+ ++.+..+..+...... +.++|+|++|++++ .+++|.|||+.
T Consensus 382 g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~----v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~ 457 (543)
T 1nir_A 382 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLF----IKTHPKSSHLYVDTTFNPDARISQSVAVFDLK 457 (543)
T ss_dssp EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCC----EECCTTCCEEEECCTTCSSHHHHTCEEEEETT
T ss_pred ccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceE----EEcCCCCCcEEEecCCCCCcccCceEEEEECC
Confidence 55566665 579999999988 8899999887755433 88999999999987 26799999999
Q ss_pred Cccee-ecc--------cccCcCEEEEEEeCCCCcEEEee-----CCCeEEEcC
Q 010470 471 KADIV-RTL--------KEHTAPVLSCSWSGLGKPLASAD-----KNGVVCVWT 510 (510)
Q Consensus 471 ~~~~~-~~~--------~~~~~~v~~~~~~~~~~~l~s~~-----~dg~i~iwd 510 (510)
+++.. ..+ ..+...+..+.|+|+|+.|+++. .|+.|.|||
T Consensus 458 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 458 NLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp CTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred CCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEE
Confidence 98876 333 34567899999999999887652 479999997
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.98 E-value=1.2e-29 Score=247.31 Aligned_cols=243 Identities=16% Similarity=0.119 Sum_probs=210.7
Q ss_pred eccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCC
Q 010470 220 KINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNS 298 (510)
Q Consensus 220 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~ 298 (510)
.+.+|.+.|.+++|+|++.++++++.|+.|++||+.+++.+..+..|...+.+++|+|+++++++++ .++.|++||+.+
T Consensus 164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~ 243 (433)
T 3bws_A 164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT 243 (433)
T ss_dssp HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC
Confidence 4568999999999999999999999999999999999999888888999999999999999886555 799999999999
Q ss_pred CCeeEeecCCCCceEEEEEecCCCCEEEEEe--------CCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEE-EEe
Q 010470 299 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAA--------YDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTI-FSG 369 (510)
Q Consensus 299 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~--------~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~ 369 (510)
++.+..+..+ ..+.+++|+| ++..+++++ .||.|++||+.+++.+..+.....+.+++|+|+++.+ +++
T Consensus 244 ~~~~~~~~~~-~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~ 321 (433)
T 3bws_A 244 KLEIRKTDKI-GLPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSD 321 (433)
T ss_dssp TEEEEECCCC-SEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEE
T ss_pred CcEEEEecCC-CCceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEe
Confidence 9888887754 5689999999 777888877 4889999999999988887766788999999999755 566
Q ss_pred cCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEec---------------CCcEEEEEcCCceeeeEeec
Q 010470 370 HIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR---------------DNLHNLFDIRSLEVCGSLRA 434 (510)
Q Consensus 370 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---------------d~~i~i~d~~~~~~~~~~~~ 434 (510)
+.++.|++||+.+++....+... ..+.+++|+|+|+++++++. ||.|++||+.+++....+..
T Consensus 322 ~~~~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~ 399 (433)
T 3bws_A 322 MCCSKIEVYDLKEKKVQKSIPVF--DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA 399 (433)
T ss_dssp TTTTEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC
T ss_pred cCCCEEEEEECCCCcEEEEecCC--CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC
Confidence 89999999999999888777643 77999999999999888876 57999999999998888766
Q ss_pred CCCeeecCceeEEEcCCCCEEEEEcC-CCeEEEEeCCC
Q 010470 435 TGNRVASNWSRSCISPDESYVAAGSA-DGSVYIWSISK 471 (510)
Q Consensus 435 ~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~ 471 (510)
... +..++|+|+|++|++++. |+.|++|++..
T Consensus 400 ~~~-----~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 400 GNQ-----PTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SSS-----EEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CCC-----CceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 332 345899999999988764 99999999763
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=6.1e-29 Score=239.89 Aligned_cols=276 Identities=14% Similarity=0.128 Sum_probs=214.5
Q ss_pred cccceEEEEEecCCC-EEEEee----CCC----eEEEEeC--CCCcce--ecccccccceeEEEEec-------------
Q 010470 224 HEGGCASILFEYNSA-RLISGG----QDK----SIKLWDT--NTGSLS--STLYGCLGSVLDLAITH------------- 277 (510)
Q Consensus 224 h~~~v~~~~~s~~~~-~l~s~~----~dg----~i~iwd~--~~~~~~--~~~~~~~~~v~~~~~~~------------- 277 (510)
+.+.|....|++.|. ++++|+ .|| .|++||+ .+++.+ ..+.+|...+..+++++
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 335678888888775 555776 467 8999999 888876 45778888888777765
Q ss_pred -CCCEEEEEeCC------CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCC---cEEEEECCCCeEeee
Q 010470 278 -DNRSVIAASSS------NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR---TLKVWDLHKGYCVNT 347 (510)
Q Consensus 278 -~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~ 347 (510)
.+..++.++.+ +.|++||+. +.....+.+|...+.+++|+| ++..|++++.++ .|++||+.+++....
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~~~l 218 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQV 218 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEEE
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcEEEe
Confidence 25666666654 799999987 455677788999999999999 888999998875 999999999987655
Q ss_pred eeecCceeEEEEcCCCCEEE-EecCCCc--EEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEec-CC--cEEEE
Q 010470 348 IIFHSNCNALAFSMDGQTIF-SGHIDGN--LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR-DN--LHNLF 421 (510)
Q Consensus 348 ~~~~~~i~~i~~~~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~--~i~i~ 421 (510)
......+.+++|+|+|+.|+ +++.+|. |++||+.+++. ..+..+. ..+.++.|+|+|++|++++. ++ .|++|
T Consensus 219 ~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~~spdg~~l~~~s~~~g~~~i~~~ 296 (415)
T 2hqs_A 219 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGR-SNNTEPTWFPDSQNLAFTSDQAGRPQVYKV 296 (415)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCS-SCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCC-CcccceEECCCCCEEEEEECCCCCcEEEEE
Confidence 54556789999999999887 6666554 99999988875 4455554 78999999999999988876 44 67788
Q ss_pred EcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC---CeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEE
Q 010470 422 DIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD---GSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLA 498 (510)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 498 (510)
|+.+++.. .+..+... +..++|+|+|++|++++.+ +.|++||+.+++.. .+..|. .+.+++|+|+|++|+
T Consensus 297 d~~~~~~~-~l~~~~~~----~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~ 369 (415)
T 2hqs_A 297 NINGGAPQ-RITWEGSQ----NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVI 369 (415)
T ss_dssp ETTSSCCE-ECCCSSSE----EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEE
T ss_pred ECCCCCEE-EEecCCCc----ccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEE
Confidence 98877643 23333333 3348999999999988764 58999999988764 454454 899999999999999
Q ss_pred EeeCCC---eEEEcC
Q 010470 499 SADKNG---VVCVWT 510 (510)
Q Consensus 499 s~~~dg---~i~iwd 510 (510)
+++.++ .|++||
T Consensus 370 ~~s~~~~~~~l~~~d 384 (415)
T 2hqs_A 370 YSSSQGMGSVLNLVS 384 (415)
T ss_dssp EEEEETTEEEEEEEE
T ss_pred EEEcCCCccEEEEEE
Confidence 888776 788875
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=2.3e-28 Score=235.86 Aligned_cols=278 Identities=14% Similarity=0.101 Sum_probs=217.0
Q ss_pred eEEeccc--ccccccccCCCccce--eeccccccceEEEEEec--------------CCCEEEEeeCC------CeEEEE
Q 010470 197 VVRRSEE--GAEFFAESTVPSTCK--HKINAHEGGCASILFEY--------------NSARLISGGQD------KSIKLW 252 (510)
Q Consensus 197 ~~~~~~~--~~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~s~--------------~~~~l~s~~~d------g~i~iw 252 (510)
.+++|+. .. .+++ ..+.+|...+..+++++ .+..++.++.+ +.|++|
T Consensus 94 ~i~lwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~ 164 (415)
T 2hqs_A 94 AYQLVDTGGAP---------GTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVS 164 (415)
T ss_dssp EEEEEECSSST---------TCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEE
T ss_pred EEEEEeCCCCC---------CCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEE
Confidence 7888875 32 1233 45788888888887775 15666666654 799999
Q ss_pred eCCCCcceecccccccceeEEEEecCCCEEEEEeCCC---eEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEE-EE
Q 010470 253 DTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSN---NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVV-SA 328 (510)
Q Consensus 253 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~-s~ 328 (510)
|+. +.....+.+|...+.+++|+|+|++|++++.++ .|++||+.+++.. .+..|...+.+++|+| ++..|+ ++
T Consensus 165 d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp-dg~~la~~~ 241 (415)
T 2hqs_A 165 DYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP-DGSKLAFAL 241 (415)
T ss_dssp ETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT-TSSEEEEEE
T ss_pred cCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC-CCCEEEEEE
Confidence 997 455677788999999999999999999999875 9999999988875 4667888999999999 677666 66
Q ss_pred eCCCc--EEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecC-CC--cEEEEECCCCceeeeecccccccEEEEEEc
Q 010470 329 AYDRT--LKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI-DG--NLRLWDIQTGKLLSEVAAHSLAAVTSISLS 403 (510)
Q Consensus 329 ~~dg~--i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~ 403 (510)
+.++. |++||+.++...........+.+++|+|+|+.|++++. +| .|++||+.+++.. .+..+. ..+.+++|+
T Consensus 242 ~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~~s 319 (415)
T 2hqs_A 242 SKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEG-SQNQDADVS 319 (415)
T ss_dssp CTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSS-SEEEEEEEC
T ss_pred ecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEecCC-CcccCeEEC
Confidence 66654 99999998876544444456899999999999887775 44 6888899877643 343333 678899999
Q ss_pred CCCCEEEEEecC---CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCC---eEEEEeCCCcceeec
Q 010470 404 RSGNIILTSGRD---NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADG---SVYIWSISKADIVRT 477 (510)
Q Consensus 404 ~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~ 477 (510)
|+|++|++++.+ ..|.+||+.+++.. .+..+. .+..++|+|+|++|++++.++ .|++||+. +.....
T Consensus 320 pdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-----~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~ 392 (415)
T 2hqs_A 320 SDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-----LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKAR 392 (415)
T ss_dssp TTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-----SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEE
T ss_pred CCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-----CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEE
Confidence 999999988765 58999999988763 333322 344589999999999888776 79999986 556777
Q ss_pred ccccCcCEEEEEEeCCCC
Q 010470 478 LKEHTAPVLSCSWSGLGK 495 (510)
Q Consensus 478 ~~~~~~~v~~~~~~~~~~ 495 (510)
+..|.+.|.+++|+|.-.
T Consensus 393 l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 393 LPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp CCCSSSEEEEEEECCCCC
T ss_pred eeCCCCCCcCCccccccc
Confidence 888999999999999754
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=3.1e-28 Score=242.04 Aligned_cols=274 Identities=12% Similarity=0.091 Sum_probs=221.1
Q ss_pred EEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEc--CCCCeeEeecCCC
Q 010470 232 LFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV--NSGRVRHTLTGHT 309 (510)
Q Consensus 232 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~--~~~~~~~~~~~~~ 309 (510)
+|+|++.++++++.|++|.+||..+++++.++..+.. +..++|+|+|+++++++.|+.|.+||+ .+++.+..+. +.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g 221 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG 221 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence 3789999999999999999999999999888874333 889999999999999999999999999 7888888887 45
Q ss_pred CceEEEEEecC---CCCEEEEEe-CCCcEEEEECCCCeEeeeeeec------------CceeEEEEcCCCCE-EEEecCC
Q 010470 310 DKVCAVDVSKI---SSRHVVSAA-YDRTLKVWDLHKGYCVNTIIFH------------SNCNALAFSMDGQT-IFSGHID 372 (510)
Q Consensus 310 ~~v~~i~~~~~---~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~------------~~i~~i~~~~~~~~-l~~~~~d 372 (510)
..+..++|+|. +++++++++ .+++|.+||..+++++..+... ..+.++.++|++.. +++...+
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~ 301 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 301 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence 66799999981 456666666 5899999999999988887642 25788999997765 5567788
Q ss_pred CcEEEEECCCCceee--eecccccccEEEEEEcCCCCEEEEEe-cCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEc
Q 010470 373 GNLRLWDIQTGKLLS--EVAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCIS 449 (510)
Q Consensus 373 g~i~i~d~~~~~~~~--~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s 449 (510)
|.|.+||..+++.+. .+. ....+.++.|+|+|+++++++ .++.|.+||+.+++....+.....+...... ..++
T Consensus 302 g~i~vvd~~~~~~l~~~~i~--~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~-~~~~ 378 (543)
T 1nir_A 302 GKVLLVNYKDIDNLTVTSIG--AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA-NFVH 378 (543)
T ss_dssp TEEEEEECTTSSSCEEEEEE--CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCE-EEEE
T ss_pred CeEEEEEecCCCcceeEEec--cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCc-ccCC
Confidence 999999998876544 333 225688899999999877654 5889999999999998888754333322111 1246
Q ss_pred CC-CCEEEEEc-CCCeEEEEeCCC-------cceeecccccCcCEEEEEEeCCCCcEEEee-------CCCeEEEcC
Q 010470 450 PD-ESYVAAGS-ADGSVYIWSISK-------ADIVRTLKEHTAPVLSCSWSGLGKPLASAD-------KNGVVCVWT 510 (510)
Q Consensus 450 ~~-~~~l~~~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-------~dg~i~iwd 510 (510)
|+ |.+++++. .|++|.+||+.+ ++.+.++..|.+.+..++|+|+|++|++++ .+++|.+||
T Consensus 379 p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d 455 (543)
T 1nir_A 379 PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 455 (543)
T ss_dssp TTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEE
T ss_pred CCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEE
Confidence 77 66667765 589999999988 889999999988889999999999999987 267999996
No 129
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2.1e-28 Score=220.76 Aligned_cols=201 Identities=12% Similarity=0.190 Sum_probs=157.6
Q ss_pred cccccceEEEEEecC----CCEEEEeeC--------------------CCeEEEEeC-CCCcceecccccccceeEEEEe
Q 010470 222 NAHEGGCASILFEYN----SARLISGGQ--------------------DKSIKLWDT-NTGSLSSTLYGCLGSVLDLAIT 276 (510)
Q Consensus 222 ~~h~~~v~~~~~s~~----~~~l~s~~~--------------------dg~i~iwd~-~~~~~~~~~~~~~~~v~~~~~~ 276 (510)
+-|.+.|.+++|+|+ +..+++++. |+.|++|++ .+|+.+..+.+|...+..++|+
T Consensus 108 ~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs 187 (356)
T 2w18_A 108 NLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFA 187 (356)
T ss_dssp SSSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEE
T ss_pred cccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEee
Confidence 344557888888888 777877653 888999998 5577778888888899999999
Q ss_pred c---CCCEEEEEeCCCeEEEEEcCCCCeeEeecCCC---CceEEEEEecCCCCEE------------EEEeCCCcEEEEE
Q 010470 277 H---DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHT---DKVCAVDVSKISSRHV------------VSAAYDRTLKVWD 338 (510)
Q Consensus 277 ~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~v~~i~~~~~~~~~l------------~s~~~dg~i~iwd 338 (510)
| ++.+|++++.|++|+|||+.++++++++.+|. ..+.+++|+| ++.++ ++|+.|++|++||
T Consensus 188 ~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd 266 (356)
T 2w18_A 188 EVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVIN 266 (356)
T ss_dssp EEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE-TTEEEEEEC------------CCEEEEEEE
T ss_pred ccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCcEEEEEE
Confidence 8 77999999999999999999999999998654 3677889999 67665 5688899999999
Q ss_pred CCCCeEeeeeee----cCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEec
Q 010470 339 LHKGYCVNTIIF----HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR 414 (510)
Q Consensus 339 ~~~~~~~~~~~~----~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 414 (510)
..+++.+..+.. ......+..+.++..+++|+.||+|+|||+.+++.+..+..|....+.+++|+|+|++|++|+.
T Consensus 267 ~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~ 346 (356)
T 2w18_A 267 PKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQK 346 (356)
T ss_dssp TTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECT
T ss_pred CCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEEC
Confidence 999998776531 1111123333347889999999999999999999999998876445557999999999999999
Q ss_pred CCcEEEEEc
Q 010470 415 DNLHNLFDI 423 (510)
Q Consensus 415 d~~i~i~d~ 423 (510)
|++|+|||+
T Consensus 347 D~TIklWd~ 355 (356)
T 2w18_A 347 DGNIFVYHY 355 (356)
T ss_dssp TSCEEEEEE
T ss_pred CCcEEEecC
Confidence 999999985
No 130
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=4.4e-29 Score=239.57 Aligned_cols=232 Identities=12% Similarity=0.062 Sum_probs=177.5
Q ss_pred HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEec--------CCCEEEEeeCCCeEEEEeCCCCc
Q 010470 187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEY--------NSARLISGGQDKSIKLWDTNTGS 258 (510)
Q Consensus 187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--------~~~~l~s~~~dg~i~iwd~~~~~ 258 (510)
..+++++.|+.+++|+..... .........+.||.+.|++++|+| ||++||+|+.|++|+|||+.++.
T Consensus 102 ~~las~~~d~~v~lw~~~~~~----~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~ 177 (393)
T 4gq1_A 102 LFLACVCQDNTVRLIITKNET----IITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG 177 (393)
T ss_dssp EEEEEEETTSCEEEEEEETTE----EEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE
T ss_pred CEEEEEeCCCcEEEEECCCCc----cceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc
Confidence 346788899999999854321 111234567899999999999998 88999999999999999999888
Q ss_pred ceecccccccceeEEEEecCCC-EEEEEeCCCeEEEEEcCCCCeeEe-------------------------ecCCCCce
Q 010470 259 LSSTLYGCLGSVLDLAITHDNR-SVIAASSSNNLYVWDVNSGRVRHT-------------------------LTGHTDKV 312 (510)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~-------------------------~~~~~~~v 312 (510)
....+.+|...|.+++|+|++. +|++++.||.|++||+.+++.... ..+|...+
T Consensus 178 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v 257 (393)
T 4gq1_A 178 PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSL 257 (393)
T ss_dssp EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSC
T ss_pred eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccc
Confidence 8888889999999999999875 799999999999999987753322 24577889
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-------------------CceeEEEEcC--CCCEEEEecC
Q 010470 313 CAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-------------------SNCNALAFSM--DGQTIFSGHI 371 (510)
Q Consensus 313 ~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------------~~i~~i~~~~--~~~~l~~~~~ 371 (510)
.++.|++.++..+++++.|+.+++||+..+.....+..+ .......++| ++.++++|+.
T Consensus 258 ~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~ 337 (393)
T 4gq1_A 258 ANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQ 337 (393)
T ss_dssp SEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETT
T ss_pred eeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECC
Confidence 999998668999999999999999999877654443322 1122333444 4446778899
Q ss_pred CCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC
Q 010470 372 DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR 424 (510)
Q Consensus 372 dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 424 (510)
||.|++||+.++.....+..+. .+|.+++|+|+|++|++++.+| +.+|.+.
T Consensus 338 Dg~V~lwd~~~~~~~~~~~~~~-~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 338 HGLIQLINTYEKDSNSIPIQLG-MPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp TTEEEEEETTCTTCCEEEEECS-SCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred CCEEEEEECCCCcEEEEecCCC-CcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 9999999999998888777776 7999999999999999998766 5566554
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.96 E-value=5.8e-27 Score=219.74 Aligned_cols=272 Identities=15% Similarity=0.180 Sum_probs=205.1
Q ss_pred EEEecCCCE-EEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeC-CCeEEEEEcCCCCe-eEeecC
Q 010470 231 ILFEYNSAR-LISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS-SNNLYVWDVNSGRV-RHTLTG 307 (510)
Q Consensus 231 ~~~s~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~-~~~~~~ 307 (510)
..|++++.+ +++++.++.|.+||..+++....+..+...+ .++|+|+++++++++. ++.|.+||+.+++. ...+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 345665555 6778889999999999999887777666667 9999999998777775 88999999999987 777776
Q ss_pred CCCceEEEEEecCCCCEEEEEeCCC---cEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEE-ecCCCc-EEEEECCC
Q 010470 308 HTDKVCAVDVSKISSRHVVSAAYDR---TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFS-GHIDGN-LRLWDIQT 382 (510)
Q Consensus 308 ~~~~v~~i~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~-~~~dg~-i~i~d~~~ 382 (510)
+..+..+++|+| ++++++++..++ .|.+||+.+++.+..+..+..+.+++|+|+|+++++ +..++. |.+|++..
T Consensus 82 ~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 82 GQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp CSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 766666699999 788888655553 899999999999988888788899999999986554 455688 99999875
Q ss_pred Cceee----eecccccccEEEEEEcCCCCEEEEEe-cCCcEEEEEcCCcee---eeEeecCCCeeecCceeEEEcCCCCE
Q 010470 383 GKLLS----EVAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDIRSLEV---CGSLRATGNRVASNWSRSCISPDESY 454 (510)
Q Consensus 383 ~~~~~----~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~ 454 (510)
...+. ..... ...+..++|+|+|+++++++ .++.|.+||+.+++. +..+..... ...++|+|+|++
T Consensus 161 ~g~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~-----~~~~~~spdg~~ 234 (331)
T 3u4y_A 161 DGVLFDTGQEFISG-GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNL-----PGTIVVSRDGST 234 (331)
T ss_dssp TCCEEEEEEEEECS-SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSC-----CCCEEECTTSSE
T ss_pred CCcEeecCCccccC-CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCC-----CceEEECCCCCE
Confidence 43321 11122 25689999999999665554 688999999998887 666654322 234899999997
Q ss_pred EEEEc-CCCeEEEEeCCCcce--eeccccc----C---cCEEEEEEeCCCCcEEEe-eCCCeEEEcC
Q 010470 455 VAAGS-ADGSVYIWSISKADI--VRTLKEH----T---APVLSCSWSGLGKPLASA-DKNGVVCVWT 510 (510)
Q Consensus 455 l~~~~-~dg~i~iwd~~~~~~--~~~~~~~----~---~~v~~~~~~~~~~~l~s~-~~dg~i~iwd 510 (510)
+++++ .++.|.+||+.+++. +..+..+ . .....++|+|+|++|+++ ..++.|.+||
T Consensus 235 l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 235 VYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT 301 (331)
T ss_dssp EEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence 76654 578899999998876 3322211 2 223568999999987654 4567999996
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.96 E-value=9e-28 Score=250.42 Aligned_cols=281 Identities=13% Similarity=0.047 Sum_probs=219.3
Q ss_pred ccceEEEEEecCCCEEEEeeC-CC-----eEEEEeCCCCcceecccccc------------------------cceeEEE
Q 010470 225 EGGCASILFEYNSARLISGGQ-DK-----SIKLWDTNTGSLSSTLYGCL------------------------GSVLDLA 274 (510)
Q Consensus 225 ~~~v~~~~~s~~~~~l~s~~~-dg-----~i~iwd~~~~~~~~~~~~~~------------------------~~v~~~~ 274 (510)
...|.+++|||||++|++++. |+ .|++||+.+++....+..+. ..+.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 446999999999999999998 88 89999999988765554443 2388999
Q ss_pred EecCCCEEEEEeCCCeEEEEEcCCCC--eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC
Q 010470 275 ITHDNRSVIAASSSNNLYVWDVNSGR--VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS 352 (510)
Q Consensus 275 ~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 352 (510)
|+|||++|++++. +.|++||+.++. ....+..|...+.+++|+| +++.|++++ ++.|++||+.++........+.
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP-DG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~ 192 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP-KGGFVSFIR-GRNLWVIDLASGRQMQLTADGS 192 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT-TSSEEEEEE-TTEEEEEETTTTEEEECCCCCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC-CCCEEEEEe-CCcEEEEecCCCCEEEeccCCc
Confidence 9999999999987 899999999873 4455677888999999999 888888887 5699999999887765544332
Q ss_pred c-----------------eeEEEEcCCCCEEEEecCCC---------------------------------cEEEEECCC
Q 010470 353 N-----------------CNALAFSMDGQTIFSGHIDG---------------------------------NLRLWDIQT 382 (510)
Q Consensus 353 ~-----------------i~~i~~~~~~~~l~~~~~dg---------------------------------~i~i~d~~~ 382 (510)
. +.+++|+|||++|++++.|+ .|++||+.+
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 272 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE 272 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence 2 47899999999999887665 789999988
Q ss_pred -Cceeeeecc-cccccEEEEEEcCCCCEEEEEec-----CCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEE
Q 010470 383 -GKLLSEVAA-HSLAAVTSISLSRSGNIILTSGR-----DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 455 (510)
Q Consensus 383 -~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 455 (510)
++....... .+...+.+++| |||++|++++. +..|.+||+.+++....+..+.......+..++|+|||+++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~ 351 (741)
T 2ecf_A 273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSIL 351 (741)
T ss_dssp TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEE
T ss_pred CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEE
Confidence 775544322 23368999999 99999987764 46899999999887776655443211122347899999999
Q ss_pred EEEcCCCeEEEEeCC-CcceeecccccCcCEEEE-EEeCCCCcEEE-eeCCC--eEEEcC
Q 010470 456 AAGSADGSVYIWSIS-KADIVRTLKEHTAPVLSC-SWSGLGKPLAS-ADKNG--VVCVWT 510 (510)
Q Consensus 456 ~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~-~~~~~~~~l~s-~~~dg--~i~iwd 510 (510)
++++.||.+.||.+. ++. ...+..|...|..+ .|+|+|+.|+. ++.++ .+++|+
T Consensus 352 ~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 352 WSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp EEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred EEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 999999987777665 344 77777788888887 59999997754 44455 788884
No 133
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.96 E-value=2.5e-26 Score=217.40 Aligned_cols=271 Identities=15% Similarity=0.134 Sum_probs=218.6
Q ss_pred cccceEEEEEecCCCEEEEeeC-------CCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEE
Q 010470 224 HEGGCASILFEYNSARLISGGQ-------DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWD 295 (510)
Q Consensus 224 h~~~v~~~~~s~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd 295 (510)
....+..++|+|+|+++++++. ++.|.+||..+++....+.. ...+..++|+|+++++++++ .++.|.+||
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 3456889999999999888774 56899999999988777654 34578899999999766655 578999999
Q ss_pred cCCCCeeEeecCCCCc---------eEEEEEecCCCCEEEEEe--CCCcEEEEECCCCeEeeeee-ecCceeEEEEcCCC
Q 010470 296 VNSGRVRHTLTGHTDK---------VCAVDVSKISSRHVVSAA--YDRTLKVWDLHKGYCVNTII-FHSNCNALAFSMDG 363 (510)
Q Consensus 296 ~~~~~~~~~~~~~~~~---------v~~i~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~-~~~~i~~i~~~~~~ 363 (510)
+.+++.+..+..+... +.++.|+| +++.+++++ .++.|.+||+.+++.+..+. ....+.+++|+|+|
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg 196 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG 196 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence 9999988887754422 78899999 666666554 47899999999999988887 44558999999999
Q ss_pred CEEEEecCCCcEEEEECCCCceeeeeccc---ccccEEEEEEcCCCCEEEEEecC-CcEEEEEcCCceeeeEeecCCCee
Q 010470 364 QTIFSGHIDGNLRLWDIQTGKLLSEVAAH---SLAAVTSISLSRSGNIILTSGRD-NLHNLFDIRSLEVCGSLRATGNRV 439 (510)
Q Consensus 364 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~ 439 (510)
+++++++.++.|.+||+.+++....+... ....+.+++|+|+|+++++++.+ +.|.+||+.+++....+.....
T Consensus 197 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-- 274 (353)
T 3vgz_A 197 KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES-- 274 (353)
T ss_dssp TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--
T ss_pred CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--
Confidence 99999999999999999999888777652 22468889999999987776654 8999999999988877765432
Q ss_pred ecCceeEEEcCCCCEEEEEc-CCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCC
Q 010470 440 ASNWSRSCISPDESYVAAGS-ADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKN 503 (510)
Q Consensus 440 ~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 503 (510)
..++|+|+|+++++++ .++.|.+||+.+++.+..+..+. .+.+++|+|+|++|++++.+
T Consensus 275 ----~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 275 ----LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp ----CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-EEEEEEECTTSCEEEEEEEC
T ss_pred ----ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-CCCeEEEcCCCCEEEEEEcc
Confidence 2388999999665554 68999999999999888776543 67899999999977665544
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.96 E-value=2.3e-26 Score=216.66 Aligned_cols=269 Identities=14% Similarity=0.207 Sum_probs=193.7
Q ss_pred EEEEeeCCCeEEEEeCC-CCcc-eecccccccceeEEEEecCCCEEEEEeCC-CeEEEEEcC--CCC--eeEeecCCCCc
Q 010470 239 RLISGGQDKSIKLWDTN-TGSL-SSTLYGCLGSVLDLAITHDNRSVIAASSS-NNLYVWDVN--SGR--VRHTLTGHTDK 311 (510)
Q Consensus 239 ~l~s~~~dg~i~iwd~~-~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~iwd~~--~~~--~~~~~~~~~~~ 311 (510)
.+++++.|+.|.+|++. ++.. ......+...+.+++|+|++++|++++.+ +.|.+|++. ++. .+..+..+. .
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~ 85 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S 85 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-C
Confidence 34455779999999995 3322 12223567788999999999999998876 899999997 555 334454444 7
Q ss_pred eEEEEEecCCCCEEEEEe-CCCcEEEEECC---CCeEeeeeeecCceeEEEEcCCCCEEEEec-CCCcEEEEECCC-Cce
Q 010470 312 VCAVDVSKISSRHVVSAA-YDRTLKVWDLH---KGYCVNTIIFHSNCNALAFSMDGQTIFSGH-IDGNLRLWDIQT-GKL 385 (510)
Q Consensus 312 v~~i~~~~~~~~~l~s~~-~dg~i~iwd~~---~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~ 385 (510)
+.+++|+| ++.++++++ .++.|.+||+. ....+..+.....+.+++|+|+|+++++++ .++.|.+||+.+ ++.
T Consensus 86 ~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 86 LTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp CSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CcEEEEcC-CCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence 88999999 677665555 48899999994 445555556666799999999999888776 889999999987 544
Q ss_pred ee----eecccccccEEEEEEcCCCCEEEEEe-cCCcEEEEEcCC--cee--eeEeecCCC--eeecCceeEEEcCCCCE
Q 010470 386 LS----EVAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDIRS--LEV--CGSLRATGN--RVASNWSRSCISPDESY 454 (510)
Q Consensus 386 ~~----~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~--~~~--~~~~~~~~~--~~~~~~~~~~~s~~~~~ 454 (510)
.. .+.......+.+++|+|+|+++++++ .++.|.+|++.. +.. ...+..... ........++|+|+|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 244 (343)
T 1ri6_A 165 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH 244 (343)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCE
Confidence 32 23333335788999999999776555 789999999953 332 222221111 11122345899999998
Q ss_pred EE-EEcCCCeEEEEeCC--C--cceeecccccCcCEEEEEEeCCCCcEEEee-CCCeEEEcC
Q 010470 455 VA-AGSADGSVYIWSIS--K--ADIVRTLKEHTAPVLSCSWSGLGKPLASAD-KNGVVCVWT 510 (510)
Q Consensus 455 l~-~~~~dg~i~iwd~~--~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd 510 (510)
|+ ++..++.|.+|++. + .+.+..+..+.. +.+++|+|+|++|++++ .++.|.+|+
T Consensus 245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred EEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEE
Confidence 77 45578999999998 2 344555554444 88999999999888777 689999993
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.95 E-value=4.2e-26 Score=209.90 Aligned_cols=253 Identities=14% Similarity=0.115 Sum_probs=193.6
Q ss_pred EeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC-CCeeEeecCC-CCceEEEEEec
Q 010470 242 SGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS-GRVRHTLTGH-TDKVCAVDVSK 319 (510)
Q Consensus 242 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~-~~~v~~i~~~~ 319 (510)
+++.|+.|++||+.+++.. .+..|...|.+++|+|++++|++++ ++.|++||+.+ ++.......+ ...+.+++|+|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 4567899999999988765 4556889999999999999999887 78999999999 8877766665 47789999999
Q ss_pred CCCCEEEEEeC--C--CcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEE-EecCCCcEEEEECC--CCceeeeeccc
Q 010470 320 ISSRHVVSAAY--D--RTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIF-SGHIDGNLRLWDIQ--TGKLLSEVAAH 392 (510)
Q Consensus 320 ~~~~~l~s~~~--d--g~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~dg~i~i~d~~--~~~~~~~~~~~ 392 (510)
++.++++++. + ..|..|++.++. ...+.....+..++|+|+++.|+ +++.++.+.+|++. ++. ...+..+
T Consensus 95 -dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~ 171 (297)
T 2ojh_A 95 -DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHG 171 (297)
T ss_dssp -TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCCS
T ss_pred -CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEcccC
Confidence 7888888883 3 445555555554 44455555688999999999887 67788988888853 343 3444444
Q ss_pred ccccEEEEEEcCCCCEEEEEe-cCCcEEEEEcC-CceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC---------
Q 010470 393 SLAAVTSISLSRSGNIILTSG-RDNLHNLFDIR-SLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD--------- 461 (510)
Q Consensus 393 ~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d--------- 461 (510)
. ..+.++.|+|+|++|++++ .++.+.+|++. .+.....+..+... +..++|+|+|++|++++.+
T Consensus 172 ~-~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~s~dg~~l~~~~~~~~~~~~~~~ 246 (297)
T 2ojh_A 172 E-GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYG----DWFPHPSPSGDKVVFVSYDADVFDHPRD 246 (297)
T ss_dssp S-SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEE----EEEEEECTTSSEEEEEEEETTCCSCCSS
T ss_pred C-CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcc----cCCeEECCCCCEEEEEEcCCCCCccccc
Confidence 4 7899999999999888766 58899999886 44444455444332 3448999999999988765
Q ss_pred --CeEEEEeCCCcce--eecccccCcCEEEEEEeCCCCcEEEeeCCC
Q 010470 462 --GSVYIWSISKADI--VRTLKEHTAPVLSCSWSGLGKPLASADKNG 504 (510)
Q Consensus 462 --g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 504 (510)
+.|++||+.+++. +..+.+|...+.+++|+|+|++|++++.+.
T Consensus 247 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 247 LDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 5699999988765 344447888899999999999988877653
No 136
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.95 E-value=6.7e-26 Score=212.88 Aligned_cols=262 Identities=10% Similarity=0.109 Sum_probs=205.0
Q ss_pred CEEEEeeCCCeEEEEeCCCCcceeccccccc--ceeEEEEecCCCEEEEE-eCCCeEEEEEcCCCCeeEeecCC-----C
Q 010470 238 ARLISGGQDKSIKLWDTNTGSLSSTLYGCLG--SVLDLAITHDNRSVIAA-SSSNNLYVWDVNSGRVRHTLTGH-----T 309 (510)
Q Consensus 238 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~-----~ 309 (510)
+++++++.++.|.+||+.+++.+..+..... .+..++|+|++++++++ +.++.|.+||+.+++.+..+... .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4789999999999999999988777653322 47899999999876555 46789999999999887766532 2
Q ss_pred CceEEEEEecCCCCEEEEEe------------CCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEE
Q 010470 310 DKVCAVDVSKISSRHVVSAA------------YDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRL 377 (510)
Q Consensus 310 ~~v~~i~~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i 377 (510)
..+.+++|+| +++.+++++ .++.|.+||+.+++.+..+.....+.+++|+|+|++++++ ++.|.+
T Consensus 82 ~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 82 KSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp ECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred ccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEE
Confidence 2577899999 777777775 5799999999999988888777778999999999988887 588999
Q ss_pred EECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCC------------------------cEEEEEcCCceeeeEee
Q 010470 378 WDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDN------------------------LHNLFDIRSLEVCGSLR 433 (510)
Q Consensus 378 ~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~------------------------~i~i~d~~~~~~~~~~~ 433 (510)
||+.+++....+..+.. ...+.|+|+|..+++++..+ .|.+||+.+++.. .+.
T Consensus 159 ~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~ 235 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSW--EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MRE 235 (337)
T ss_dssp EETTTTEEEEEECSTTT--TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEE
T ss_pred EECCCCcEeeeeecccc--CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eee
Confidence 99999988777665431 11237899998776554332 4689999988765 222
Q ss_pred cCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 434 ATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 434 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
... .......++|+|+|++++++ ++.|++||+.+++.+..+..+ ..+.+++|+|+|++|++++.++.|.+||
T Consensus 236 ~~~--~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 236 VRI--MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEE--CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred cCC--CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence 211 11223458999999999988 789999999999888777643 4578999999999999999999999996
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.95 E-value=2e-26 Score=239.64 Aligned_cols=280 Identities=10% Similarity=0.079 Sum_probs=207.1
Q ss_pred ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccccc---ceeEEEEecCCCEEEEEeCC---------CeEEEE
Q 010470 227 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLG---SVLDLAITHDNRSVIAASSS---------NNLYVW 294 (510)
Q Consensus 227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------~~i~iw 294 (510)
.+.+++|+|||+++++ +.||.|++||+.+++....+.+|.. .|.+++|+|||++|++++.+ +.+++|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678899999997776 7899999999999988777766654 49999999999999999864 788999
Q ss_pred EcCCCCeeEee---cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-Cce----------------
Q 010470 295 DVNSGRVRHTL---TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNC---------------- 354 (510)
Q Consensus 295 d~~~~~~~~~~---~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i---------------- 354 (510)
|+.+++. ..+ .+|...+..++|+| +++.|++++. +.|++||+.++........+ ..+
T Consensus 97 d~~~~~~-~~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~ 173 (723)
T 1xfd_A 97 KIPHGDP-QSLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK 173 (723)
T ss_dssp ESSSCCC-EECCCTTCCSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred ECCCCce-EeccCCccccccccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEecc
Confidence 9998876 333 34555688999999 8888888884 89999999988776555432 222
Q ss_pred --eEEEEcCCCCEEEEecCCC----------------------------------cEEEEECCCCceeeeeccc-----c
Q 010470 355 --NALAFSMDGQTIFSGHIDG----------------------------------NLRLWDIQTGKLLSEVAAH-----S 393 (510)
Q Consensus 355 --~~i~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~~~~~~-----~ 393 (510)
.+++|+|||+.|++++.++ .|++||+.+++....+..+ +
T Consensus 174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~ 253 (723)
T 1xfd_A 174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR 253 (723)
T ss_dssp SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS
T ss_pred CcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCc
Confidence 7899999999999876543 7999999888765555543 1
Q ss_pred cccEEEEEEcCCCCEEEEEecC----CcEEEEEcCCceeeeEeecCC-CeeecCceeEEEcCCCCEEEE--EcCCC----
Q 010470 394 LAAVTSISLSRSGNIILTSGRD----NLHNLFDIRSLEVCGSLRATG-NRVASNWSRSCISPDESYVAA--GSADG---- 462 (510)
Q Consensus 394 ~~~i~~i~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~--~~~dg---- 462 (510)
...+.++.|+|||+++++.+.. ..|.+||+.+++....+..+. ..+......++|+|||+.|+. +..+|
T Consensus 254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 333 (723)
T 1xfd_A 254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGK 333 (723)
T ss_dssp SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSC
T ss_pred cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcc
Confidence 3678999999999988776533 579999999888766554322 111100124789999997765 44566
Q ss_pred --eEEEEe-CCCcce--eecccccCcCEEE-EEEeCCCCcEEEeeCC---CeEEEcC
Q 010470 463 --SVYIWS-ISKADI--VRTLKEHTAPVLS-CSWSGLGKPLASADKN---GVVCVWT 510 (510)
Q Consensus 463 --~i~iwd-~~~~~~--~~~~~~~~~~v~~-~~~~~~~~~l~s~~~d---g~i~iwd 510 (510)
.|++|| ..++.. ...+..+...+.. ++|+|||+.|+..+.+ +.+.+|+
T Consensus 334 ~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 334 FYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp EEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred eeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence 577777 344441 4555544445554 6999999998766555 7788884
No 138
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=9.2e-26 Score=235.24 Aligned_cols=273 Identities=14% Similarity=0.109 Sum_probs=205.0
Q ss_pred ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc--ceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEe
Q 010470 227 GCASILFEYNSARLISGGQDKSIKLWDTNTGS--LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT 304 (510)
Q Consensus 227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 304 (510)
.|.+++|||||++|++++. +.|++||+.++. ....+..|...+.+++|+|||++|++++. +.|++||+.+++....
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQL 187 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEEC
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEe
Confidence 4899999999999999986 999999999873 44567778889999999999999998875 5899999998876655
Q ss_pred ecCCCCc----------------eEEEEEecCCCCEEEEEeCCC---------------------------------cEE
Q 010470 305 LTGHTDK----------------VCAVDVSKISSRHVVSAAYDR---------------------------------TLK 335 (510)
Q Consensus 305 ~~~~~~~----------------v~~i~~~~~~~~~l~s~~~dg---------------------------------~i~ 335 (510)
...+... +.++.|+| +++.|++++.|+ .|.
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 5444432 47799999 788888877665 889
Q ss_pred EEECCC-CeEeeeeee---cCceeEEEEcCCCCEEEEecC-----CCcEEEEECCCCceeeeecccccc---cEEEEEEc
Q 010470 336 VWDLHK-GYCVNTIIF---HSNCNALAFSMDGQTIFSGHI-----DGNLRLWDIQTGKLLSEVAAHSLA---AVTSISLS 403 (510)
Q Consensus 336 iwd~~~-~~~~~~~~~---~~~i~~i~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~---~i~~i~~~ 403 (510)
+||+.+ +........ ...+..++| |||++|++++. ++.|++||+.+++....+..+... .+.++.|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999988 775544322 234889999 99999986543 567999999999877666554322 34688999
Q ss_pred CCCCEEEEEecCCcEEEEEcC-CceeeeEeecCCCeeecCceeE-EEcCCCCEEEE-EcCCC--eEEEEeCCC-cceeec
Q 010470 404 RSGNIILTSGRDNLHNLFDIR-SLEVCGSLRATGNRVASNWSRS-CISPDESYVAA-GSADG--SVYIWSISK-ADIVRT 477 (510)
Q Consensus 404 ~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~l~~-~~~dg--~i~iwd~~~-~~~~~~ 477 (510)
|+|+++++++.+|.+.||.+. .+. ...+..+...+. .+ .|+|+|+.|+. ++.++ .++||++.. +.....
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~----~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~ 420 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVD----ELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQR 420 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEE----EEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEE
T ss_pred CCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEE----eEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeee
Confidence 999999999999988888765 333 444444433322 24 59999997754 45455 899999864 555566
Q ss_pred ccccCcCEEEEEEeCCCCcEEEeeCC----CeEEEc
Q 010470 478 LKEHTAPVLSCSWSGLGKPLASADKN----GVVCVW 509 (510)
Q Consensus 478 ~~~~~~~v~~~~~~~~~~~l~s~~~d----g~i~iw 509 (510)
+.. ...+.+++|+|||++|+....+ +.+.+|
T Consensus 421 l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~ 455 (741)
T 2ecf_A 421 LSK-APGMHSASFARNASVYVDSWSNNSTPPQIELF 455 (741)
T ss_dssp CCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred ccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEE
Confidence 654 5678899999999988765433 345554
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=2.1e-24 Score=202.29 Aligned_cols=272 Identities=12% Similarity=0.108 Sum_probs=197.7
Q ss_pred hhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeC-CCeEEEEeCCCCcc-eeccccc
Q 010470 189 LAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQ-DKSIKLWDTNTGSL-SSTLYGC 266 (510)
Q Consensus 189 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~-~~~~~~~ 266 (510)
+++...++.+.+|+... .+....+..+...+ +++|+|+|+++++++. ++.|.+||+.+++. ...+..+
T Consensus 13 ~v~~~~~~~v~~~d~~~---------~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 13 IVVEQHLRRISFFSTDT---------LEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp EEEEGGGTEEEEEETTT---------CCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred EEEecCCCeEEEEeCcc---------cceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence 34455677788887433 22344445555666 9999999997766655 88999999999987 6667666
Q ss_pred ccceeEEEEecCCCEEEEEeCCC---eEEEEEcCCCCeeEeecCCCCceEEEEEecCCCC-EEEEEeCCCc-EEEEECCC
Q 010470 267 LGSVLDLAITHDNRSVIAASSSN---NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR-HVVSAAYDRT-LKVWDLHK 341 (510)
Q Consensus 267 ~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~-~l~s~~~dg~-i~iwd~~~ 341 (510)
..+..+++|+|++++++++..++ .|.+||+.+++.+..+..+ ..+.+++|+| +++ +++++..++. |.+|++..
T Consensus 83 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 83 QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISP-NGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECT-TSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECC-CCCEEEEEecCCCceEEEEEECC
Confidence 66666699999999999555553 8999999999888877644 4568999999 555 5555566688 99999875
Q ss_pred CeEe-----eeeeecCceeEEEEcCCCCEEE-EecCCCcEEEEECCCCce---eeeecccccccEEEEEEcCCCCEEEEE
Q 010470 342 GYCV-----NTIIFHSNCNALAFSMDGQTIF-SGHIDGNLRLWDIQTGKL---LSEVAAHSLAAVTSISLSRSGNIILTS 412 (510)
Q Consensus 342 ~~~~-----~~~~~~~~i~~i~~~~~~~~l~-~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~i~~i~~~~~~~~l~~~ 412 (510)
...+ ..+.....+..++|+|+|++++ ++..++.|.+||+.+++. +..+... ..+..++|+|+|++++++
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~v~ 238 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN--NLPGTIVVSRDGSTVYVL 238 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS--SCCCCEEECTTSSEEEEE
T ss_pred CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC--CCCceEEECCCCCEEEEE
Confidence 4322 2223345589999999999665 455788999999999887 6666654 677899999999977665
Q ss_pred e-cCCcEEEEEcCCcee--eeEeecCC---CeeecCceeEEEcCCCCEEEEEc-CCCeEEEEeCCCcce
Q 010470 413 G-RDNLHNLFDIRSLEV--CGSLRATG---NRVASNWSRSCISPDESYVAAGS-ADGSVYIWSISKADI 474 (510)
Q Consensus 413 ~-~d~~i~i~d~~~~~~--~~~~~~~~---~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~ 474 (510)
+ .++.|.+||+.+++. +..+.... .........++|+|+|++|++++ .++.|.+||+.....
T Consensus 239 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 239 TESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred EcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 5 577899999998877 33333221 11111113479999999886554 567999999986543
No 140
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.94 E-value=2.8e-25 Score=224.76 Aligned_cols=271 Identities=14% Similarity=0.095 Sum_probs=200.1
Q ss_pred ccceEEEEEecCCCEEEEeeC-CCeEEEEeCCCCcceecccccc-cceeEEEEecCCCEEEEEeC---CCeEEEEEcCC-
Q 010470 225 EGGCASILFEYNSARLISGGQ-DKSIKLWDTNTGSLSSTLYGCL-GSVLDLAITHDNRSVIAASS---SNNLYVWDVNS- 298 (510)
Q Consensus 225 ~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~- 298 (510)
..+|.+++|+|||+.||+++. ||++.||++.++.... +..+. ..+..++|+|| +.+++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 457999999999999999887 9999999997666544 44444 68999999999 77777765 44556655543
Q ss_pred --CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCC----
Q 010470 299 --GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHID---- 372 (510)
Q Consensus 299 --~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---- 372 (510)
+... .+..+. .+...+|+|+....+++++.++.+.+||+.++........+. .+++|+|||++|++++.+
T Consensus 99 ~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~ 174 (582)
T 3o4h_A 99 RPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGR 174 (582)
T ss_dssp STTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTE
T ss_pred CCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCC
Confidence 3322 333222 344668888444555555555666699999888766555444 889999999999987766
Q ss_pred CcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCC--cEEEEEcCCceeeeEeecCCCeeec----CceeE
Q 010470 373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDN--LHNLFDIRSLEVCGSLRATGNRVAS----NWSRS 446 (510)
Q Consensus 373 g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~----~~~~~ 446 (510)
+.|++||+.+++.. .+..+. ..+.+++|+|||+.|+++..++ .|++||+.+++.. .+..+...+.. .+...
T Consensus 175 ~~i~~~d~~~g~~~-~l~~~~-~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 251 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-VFDSGE-GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWL 251 (582)
T ss_dssp EEEEEEETTTCCCE-EECCSS-CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEE
T ss_pred eEEEEEcCCCCCce-EeecCC-CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccce
Confidence 77999999888755 455444 7789999999999999888888 8999999988876 55444433322 11123
Q ss_pred EEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCe---EEEcC
Q 010470 447 CISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGV---VCVWT 510 (510)
Q Consensus 447 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~---i~iwd 510 (510)
+|+|||.++++++.+|.+++|++ ++.... +.+.|.+++|+ +++++++++.+.. +.+||
T Consensus 252 ~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 252 GYLPDGRLAVVARREGRSAVFID--GERVEA---PQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp EECTTSCEEEEEEETTEEEEEET--TEEECC---CSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred eEcCCCcEEEEEEcCCcEEEEEE--CCeecc---CCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 39999999999999999999999 665542 34678999999 9998888877744 55554
No 141
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=2.9e-25 Score=230.81 Aligned_cols=294 Identities=12% Similarity=-0.006 Sum_probs=208.4
Q ss_pred cCCceEEecccccccccccCCCccceeecccccc---ceEEEEEecCCCEEEEeeCC---------CeEEEEeCCCCcc-
Q 010470 193 QVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEG---GCASILFEYNSARLISGGQD---------KSIKLWDTNTGSL- 259 (510)
Q Consensus 193 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~s~~~~~l~s~~~d---------g~i~iwd~~~~~~- 259 (510)
+.||.+++|+... .++...+.+|.. .|.+++|||||++|++++.+ +.|.+||+.+++.
T Consensus 34 ~~dg~i~~~d~~~---------g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 104 (723)
T 1xfd_A 34 EQKGTVRLWNVET---------NTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ 104 (723)
T ss_dssp CSSSCEEEBCGGG---------CCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE
T ss_pred eCCCCEEEEECCC---------CcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE
Confidence 4677788887543 223445556654 49999999999999999874 7888999998876
Q ss_pred -eecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCce------------------EEEEEecC
Q 010470 260 -SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKV------------------CAVDVSKI 320 (510)
Q Consensus 260 -~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v------------------~~i~~~~~ 320 (510)
+....+|...+..++|+|||+.|++++. +.|++||+.+++.......+...+ .++.|+|
T Consensus 105 ~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp- 182 (723)
T 1xfd_A 105 SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP- 182 (723)
T ss_dssp ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-
T ss_pred eccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECC-
Confidence 2223345556899999999999999887 799999999888776665544433 7899999
Q ss_pred CCCEEEEEeCCC----------------------------------cEEEEECCCCeEeeeeeec-------CceeEEEE
Q 010470 321 SSRHVVSAAYDR----------------------------------TLKVWDLHKGYCVNTIIFH-------SNCNALAF 359 (510)
Q Consensus 321 ~~~~l~s~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~-------~~i~~i~~ 359 (510)
+++.|++++.++ .|++||+.++.....+..+ ..+..++|
T Consensus 183 Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 262 (723)
T 1xfd_A 183 DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKW 262 (723)
T ss_dssp TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEE
T ss_pred CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEE
Confidence 888888876543 7999999988765555432 34789999
Q ss_pred cCCCCEEEEecC----CCcEEEEECCCCceeeeecccccccE----EEEEEcCCCCEEEE--EecCC------cEEEEE-
Q 010470 360 SMDGQTIFSGHI----DGNLRLWDIQTGKLLSEVAAHSLAAV----TSISLSRSGNIILT--SGRDN------LHNLFD- 422 (510)
Q Consensus 360 ~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~i----~~i~~~~~~~~l~~--~~~d~------~i~i~d- 422 (510)
+|||+++++... +..|++||+.+++....+..++...+ ..+.|+|+|+.|+. +..++ .|.+||
T Consensus 263 SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~ 342 (723)
T 1xfd_A 263 ATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSS 342 (723)
T ss_dssp SSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECS
T ss_pred eCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEec
Confidence 999998876543 35799999999887665544332333 37899999997765 44566 567777
Q ss_pred cCCcee--eeEeecCCCeeecCceeEEEcCCCCEEEEEcCC---CeEEEEeCCCcc--eeecccc---cCcCEEEEEEeC
Q 010470 423 IRSLEV--CGSLRATGNRVASNWSRSCISPDESYVAAGSAD---GSVYIWSISKAD--IVRTLKE---HTAPVLSCSWSG 492 (510)
Q Consensus 423 ~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~--~~~~~~~---~~~~v~~~~~~~ 492 (510)
..++.. ...+....... ...++|+|||++|+..+.+ +.+++|++.... ....+.. |...+..++|+|
T Consensus 343 ~~~~~~~~~~~l~~~~~~~---~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~sp 419 (723)
T 1xfd_A 343 QPNSSNDNIQSITSGDWDV---TKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSH 419 (723)
T ss_dssp SCCSSSCCCCBSCCSSSCE---EEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECT
T ss_pred cCCCCccceeEeecCCeEE---EeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECC
Confidence 344330 23332211111 1125899999998766554 789999986532 3344443 567788999999
Q ss_pred CCCcEEEe
Q 010470 493 LGKPLASA 500 (510)
Q Consensus 493 ~~~~l~s~ 500 (510)
+|++|+..
T Consensus 420 dg~~l~~~ 427 (723)
T 1xfd_A 420 SMDFFLLK 427 (723)
T ss_dssp TSSEEEEE
T ss_pred CCCEEEEE
Confidence 99987764
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=2.1e-24 Score=203.10 Aligned_cols=288 Identities=12% Similarity=0.155 Sum_probs=198.4
Q ss_pred hcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCC-CeEEEEeCC--CCcc--eeccccc
Q 010470 192 QQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQD-KSIKLWDTN--TGSL--SSTLYGC 266 (510)
Q Consensus 192 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-g~i~iwd~~--~~~~--~~~~~~~ 266 (510)
...++.+.+|+..... ...... ...|...+.+++|+|+|++|++++.+ +.|.+|++. ++.. +..+..+
T Consensus 11 ~~~~~~v~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 83 (343)
T 1ri6_A 11 SPESQQIHVWNLNHEG------ALTLTQ-VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP 83 (343)
T ss_dssp EGGGTEEEEEEECTTS------CEEEEE-EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred CCCCCeEEEEEECCCC------cEEEee-eEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC
Confidence 3567888888743100 011122 23467789999999999999888886 999999997 5543 3344433
Q ss_pred ccceeEEEEecCCCEEEEEeC-CCeEEEEEcC---CCCeeEeecCCCCceEEEEEecCCCCEEEEEe-CCCcEEEEECCC
Q 010470 267 LGSVLDLAITHDNRSVIAASS-SNNLYVWDVN---SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAA-YDRTLKVWDLHK 341 (510)
Q Consensus 267 ~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~---~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~-~dg~i~iwd~~~ 341 (510)
. .+..++|+|+++++++++. ++.|.+||+. ..+....+..+ ..+.+++|+| +++.+++++ .++.|.+||+.+
T Consensus 84 ~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~ 160 (343)
T 1ri6_A 84 G-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP-DNRTLWVPALKQDRICLFTVSD 160 (343)
T ss_dssp S-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT-TSSEEEEEEGGGTEEEEEEECT
T ss_pred C-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC-CCCEEEEecCCCCEEEEEEecC
Confidence 3 7899999999998877765 8899999994 33444555433 4588899999 677666666 899999999987
Q ss_pred -CeEee----eee--ecCceeEEEEcCCCCEEEE-ecCCCcEEEEECCC--Cce--eeeec---cc--ccccEEEEEEcC
Q 010470 342 -GYCVN----TII--FHSNCNALAFSMDGQTIFS-GHIDGNLRLWDIQT--GKL--LSEVA---AH--SLAAVTSISLSR 404 (510)
Q Consensus 342 -~~~~~----~~~--~~~~i~~i~~~~~~~~l~~-~~~dg~i~i~d~~~--~~~--~~~~~---~~--~~~~i~~i~~~~ 404 (510)
+.... .+. ....+.+++|+|+|+++++ +..++.|.+||+.. +.. ...+. .. ....+.+++|+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~ 240 (343)
T 1ri6_A 161 DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP 240 (343)
T ss_dssp TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT
T ss_pred CCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC
Confidence 65432 222 2245889999999997764 45889999999953 432 22222 11 113577899999
Q ss_pred CCCEEEEEe-cCCcEEEEEcC----CceeeeEeecCCCeeecCceeEEEcCCCCEEEEEc-CCCeEEEEeCC--Ccc--e
Q 010470 405 SGNIILTSG-RDNLHNLFDIR----SLEVCGSLRATGNRVASNWSRSCISPDESYVAAGS-ADGSVYIWSIS--KAD--I 474 (510)
Q Consensus 405 ~~~~l~~~~-~d~~i~i~d~~----~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~--~~~--~ 474 (510)
+|++|+++. .++.|.+||+. ..+.+..+..... +..++|+|+|++|++++ .++.|.+|+++ +++ .
T Consensus 241 dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~ 315 (343)
T 1ri6_A 241 DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-----PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHE 315 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-----CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEE
T ss_pred CCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-----cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeE
Confidence 999887554 78999999998 2344444443333 23489999999888877 58999999554 553 3
Q ss_pred eecccccCcCEEEEEEeCCCC
Q 010470 475 VRTLKEHTAPVLSCSWSGLGK 495 (510)
Q Consensus 475 ~~~~~~~~~~v~~~~~~~~~~ 495 (510)
+..+... ....+++|.|+.+
T Consensus 316 ~~~~~~g-~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 316 KGRYAVG-QGPMWVVVNAHEG 335 (343)
T ss_dssp EEEEECS-SSCCEEEEEEEC-
T ss_pred ccccccC-CCCeeEEEEcccC
Confidence 3444432 3456788877643
No 143
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=6.4e-25 Score=236.59 Aligned_cols=279 Identities=11% Similarity=0.103 Sum_probs=221.7
Q ss_pred eeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC-CcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470 218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT-GSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV 296 (510)
Q Consensus 218 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 296 (510)
...+.+|.+.+.++.|+++ .++++++.||.+.||.+.. +.....+..|. .+..++|+|||+.++++. ++.|++|++
T Consensus 196 ~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~ 272 (1045)
T 1k32_A 196 FKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNP 272 (1045)
T ss_dssp EEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECT
T ss_pred eEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecC
Confidence 3455789999999999988 6777888889999998653 44445555554 467789999999888874 889999998
Q ss_pred CCCCeeEeecC-----------CCCceEEEEEe-cCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcCCC
Q 010470 297 NSGRVRHTLTG-----------HTDKVCAVDVS-KISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDG 363 (510)
Q Consensus 297 ~~~~~~~~~~~-----------~~~~v~~i~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~ 363 (510)
.... +..+.. |...+.+++|+ | ++..+++++ ++.|.+|++.++.......... .+..++|+ +|
T Consensus 273 ~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg 348 (1045)
T 1k32_A 273 DTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TK 348 (1045)
T ss_dssp TTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SE
T ss_pred CceE-eeeeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CC
Confidence 5443 335544 34478999999 8 788888877 8899999998887655333344 68899999 99
Q ss_pred CEEEEecCCCcEE-EEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecC
Q 010470 364 QTIFSGHIDGNLR-LWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASN 442 (510)
Q Consensus 364 ~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 442 (510)
+.|++++.++.+. +||+.+++... +..+ ...+.+++|+|+|++|++++.++.|++||+.+++.......+...+.
T Consensus 349 ~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~-~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~-- 424 (1045)
T 1k32_A 349 VAFIHGTREGDFLGIYDYRTGKAEK-FEEN-LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT-- 424 (1045)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEE-CCCC-CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC--
T ss_pred CeEEEEECCCceEEEEECCCCCceE-ecCC-ccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCcc--
Confidence 9999888888898 99998776543 3333 37899999999999999999999999999999888777655554443
Q ss_pred ceeEEEcCCCCEEEEEcCCC----------eEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 443 WSRSCISPDESYVAAGSADG----------SVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 443 ~~~~~~s~~~~~l~~~~~dg----------~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
.++|+|||++|++++.++ .|++||+.+++ ...+..|...+.+++|+|||++|++++.++...+|+
T Consensus 425 --~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 425 --DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp --CEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred --ceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcc
Confidence 389999999998887644 89999999887 666777888899999999999999998877766663
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.94 E-value=1.4e-24 Score=225.02 Aligned_cols=275 Identities=13% Similarity=0.115 Sum_probs=203.7
Q ss_pred cceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC-----CC
Q 010470 226 GGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS-----GR 300 (510)
Q Consensus 226 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-----~~ 300 (510)
..|.+++|||| ..++.+. ++.|++||+.+++... +..+...+.+++|+|||++|+++ .++.|++||+.+ ++
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 56999999999 6666554 5999999999886643 44566778999999999999885 679999999998 77
Q ss_pred eeEeecCCCCc--------------eEEEEEecCCCCEEEEEe---------------------------------CCCc
Q 010470 301 VRHTLTGHTDK--------------VCAVDVSKISSRHVVSAA---------------------------------YDRT 333 (510)
Q Consensus 301 ~~~~~~~~~~~--------------v~~i~~~~~~~~~l~s~~---------------------------------~dg~ 333 (510)
.......+... +.++.|+| ++++|++++ .++.
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 66555444433 47899999 888888887 4578
Q ss_pred EEEEECCCCeEeeeeee---cCceeEEEEcCCCCEEEEecCCC-----cEEEEECCCCceeeeec-ccccc---cEEEEE
Q 010470 334 LKVWDLHKGYCVNTIIF---HSNCNALAFSMDGQTIFSGHIDG-----NLRLWDIQTGKLLSEVA-AHSLA---AVTSIS 401 (510)
Q Consensus 334 i~iwd~~~~~~~~~~~~---~~~i~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~-~~~~~---~i~~i~ 401 (510)
|.+||+.++........ ...+.+++|+|||+.|++++.++ .|++||+.+++....+. ..... .+.++.
T Consensus 237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 316 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLT 316 (706)
T ss_dssp EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCE
T ss_pred EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCce
Confidence 99999998886554432 23488999999999999877665 89999999884333332 22111 246789
Q ss_pred EcC--CCCEEEEEecCCcEEEEEcC-CceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC-CC----eEEEEeCCCcc
Q 010470 402 LSR--SGNIILTSGRDNLHNLFDIR-SLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA-DG----SVYIWSISKAD 473 (510)
Q Consensus 402 ~~~--~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg----~i~iwd~~~~~ 473 (510)
|+| +|+++++++.++.+++|++. ++.....+..+...+. ..++|+|+|+.|++++. ++ .|+.||+.++.
T Consensus 317 ~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~---~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 317 FLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVT---NFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp ECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEE---EEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred eecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEE---eeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 999 99999999999999999876 5555555544332221 12689999998766544 44 67777877765
Q ss_pred eeecccccCcCEEEEEEeCCCCcEEEeeCC----CeEEEcC
Q 010470 474 IVRTLKEHTAPVLSCSWSGLGKPLASADKN----GVVCVWT 510 (510)
Q Consensus 474 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~i~iwd 510 (510)
...+. |...+.+++|+|||++|+..+.+ +.|++||
T Consensus 394 -~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 394 -TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp -CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred -ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence 33343 66779999999999988766443 5688885
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.94 E-value=1.5e-24 Score=203.62 Aligned_cols=274 Identities=13% Similarity=0.111 Sum_probs=206.0
Q ss_pred hhhhcCCceEEecccccccccccCCCccceeecc-cccc-ceEEEEEecCCCEE-EEeeCCCeEEEEeCCCCcceecccc
Q 010470 189 LAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKIN-AHEG-GCASILFEYNSARL-ISGGQDKSIKLWDTNTGSLSSTLYG 265 (510)
Q Consensus 189 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~-~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~ 265 (510)
++.+..++.+.+|+... .+....+. ++.. .+.+++|+|+|+++ ++++.++.|.+||+.+++.+..+..
T Consensus 4 ~v~~~~~~~v~~~d~~~---------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~ 74 (337)
T 1pby_B 4 ILAPARPDKLVVIDTEK---------MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL 74 (337)
T ss_dssp EEEEETTTEEEEEETTT---------TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred EEEcCCCCeEEEEECCC---------CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEc
Confidence 34556778888887433 12333333 2222 48899999999866 5556678999999999887766542
Q ss_pred -c----ccceeEEEEecCCCEEEEEe------------CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEE
Q 010470 266 -C----LGSVLDLAITHDNRSVIAAS------------SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSA 328 (510)
Q Consensus 266 -~----~~~v~~~~~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~ 328 (510)
+ ...+.+++|+|+|+++++++ .++.|.+||+.+++....+.. ...+.++.|+| ++++++++
T Consensus 75 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~ 152 (337)
T 1pby_B 75 STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL 152 (337)
T ss_dssp CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE
T ss_pred CCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe
Confidence 1 23678899999999999886 579999999998888777764 45678899999 77777776
Q ss_pred eCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCC------------------------cEEEEECCCCc
Q 010470 329 AYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDG------------------------NLRLWDIQTGK 384 (510)
Q Consensus 329 ~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg------------------------~i~i~d~~~~~ 384 (510)
++.|.+||+.+++....+........+.|+|+|..+++.+..+ .|.+||+.+++
T Consensus 153 --~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 230 (337)
T 1pby_B 153 --GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE 230 (337)
T ss_dssp --SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred --CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC
Confidence 6899999999999887776554233457899998776554332 46899999887
Q ss_pred eeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeE
Q 010470 385 LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSV 464 (510)
Q Consensus 385 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i 464 (510)
............+.+++|+|+|++++++ ++.|.+||+.+++....+..... ...++|+|+|++|++++.++.|
T Consensus 231 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~~~~~~~~i 303 (337)
T 1pby_B 231 MAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHS-----YYSVNVSTDGSTVWLGGALGDL 303 (337)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSC-----CCEEEECTTSCEEEEESBSSEE
T ss_pred ceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCc-----eeeEEECCCCCEEEEEcCCCcE
Confidence 6522112222578899999999999988 78999999999988777764432 2348999999999999999999
Q ss_pred EEEeCCCcceeecccccC
Q 010470 465 YIWSISKADIVRTLKEHT 482 (510)
Q Consensus 465 ~iwd~~~~~~~~~~~~~~ 482 (510)
.+||+.+++.+..+..+.
T Consensus 304 ~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 304 AAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp EEEETTTCCEEEEEECGG
T ss_pred EEEECcCCcEEEEEEcCC
Confidence 999999998887776543
No 146
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.94 E-value=8.3e-25 Score=226.71 Aligned_cols=267 Identities=13% Similarity=0.143 Sum_probs=195.6
Q ss_pred eEEEEEecCCCEEEEeeCCCeEEEEeCCCCcce-ecccccc-----------------cceeEEEEecCCCEEEEEeCCC
Q 010470 228 CASILFEYNSARLISGGQDKSIKLWDTNTGSLS-STLYGCL-----------------GSVLDLAITHDNRSVIAASSSN 289 (510)
Q Consensus 228 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~-----------------~~v~~~~~~~~~~~l~~~~~d~ 289 (510)
+..+.|. |+.+++++.|+ | +||+.+++.+ ..+..+. ..|.+++|+|| +.++.+. ++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence 4557777 66778888888 8 9999998873 3333332 56999999999 6666654 59
Q ss_pred eEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC-----CeEeeeeeecCc-----------
Q 010470 290 NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK-----GYCVNTIIFHSN----------- 353 (510)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~----------- 353 (510)
.|++||+.+++... +..+...+.+++|+| +++.|+++ .++.|++||+.+ +........+..
T Consensus 102 ~i~~~d~~~~~~~~-l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~e 178 (706)
T 2z3z_A 102 GLVGFDMLARKVTY-LFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQR 178 (706)
T ss_dssp EEEEEETTTTEEEE-EECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGG
T ss_pred EEEEEECCCCceEE-ccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhh
Confidence 99999998876544 444677788999999 78888885 589999999988 776654443332
Q ss_pred ----eeEEEEcCCCCEEEEec---------------------------------CCCcEEEEECCCCceeeeecc-cccc
Q 010470 354 ----CNALAFSMDGQTIFSGH---------------------------------IDGNLRLWDIQTGKLLSEVAA-HSLA 395 (510)
Q Consensus 354 ----i~~i~~~~~~~~l~~~~---------------------------------~dg~i~i~d~~~~~~~~~~~~-~~~~ 395 (510)
+.++.|+|||++|++++ .++.|++||+.+++....... .+..
T Consensus 179 e~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 258 (706)
T 2z3z_A 179 EFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEK 258 (706)
T ss_dssp CTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTC
T ss_pred hcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCce
Confidence 48999999999999886 446799999988876544332 2336
Q ss_pred cEEEEEEcCCCCEEEEEecCC-----cEEEEEcCCc-eeeeEeecCCCeeecCceeEEEcC--CCCEEEEEcCCCeEEEE
Q 010470 396 AVTSISLSRSGNIILTSGRDN-----LHNLFDIRSL-EVCGSLRATGNRVASNWSRSCISP--DESYVAAGSADGSVYIW 467 (510)
Q Consensus 396 ~i~~i~~~~~~~~l~~~~~d~-----~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~~~~dg~i~iw 467 (510)
.+.+++|+|||++|++++.++ .|.+||+.++ ...................++|+| ||+++++++.||.++||
T Consensus 259 ~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~ 338 (706)
T 2z3z_A 259 FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLY 338 (706)
T ss_dssp EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEE
T ss_pred eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEE
Confidence 799999999999999887765 8999999988 433332222211111123478999 99999999999999999
Q ss_pred eCC-CcceeecccccCcCEEE-EEEeCCCCcEEEeeCC
Q 010470 468 SIS-KADIVRTLKEHTAPVLS-CSWSGLGKPLASADKN 503 (510)
Q Consensus 468 d~~-~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~d 503 (510)
.+. ++..+..+..|...+.+ ++|+|+|+.|+.++.+
T Consensus 339 ~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 339 LYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp EEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred EEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence 876 56777777778888877 7999999977665544
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.94 E-value=8.8e-24 Score=199.41 Aligned_cols=262 Identities=10% Similarity=0.138 Sum_probs=182.9
Q ss_pred CCeEEEEeCC--CCccee-cccccccceeEEEEecCCCEEEEEeC---CCeEEEEEcCCCC--eeEeecCCCCceEEEEE
Q 010470 246 DKSIKLWDTN--TGSLSS-TLYGCLGSVLDLAITHDNRSVIAASS---SNNLYVWDVNSGR--VRHTLTGHTDKVCAVDV 317 (510)
Q Consensus 246 dg~i~iwd~~--~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~--~~~~~~~~~~~v~~i~~ 317 (510)
++.|.+|+++ +++... ....+...+..++|+|+|+ +++++. ++.|++|++.++. .+..+..+...+..++|
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 4567777654 455432 2334567778899999999 665554 6899999998766 34444557778899999
Q ss_pred ecCCCCEEEEEe-CCCcEEEEECC-CCe--Eeeeeeec----------CceeEEEEcCCCCEEEEecCCCcEEEEECC-C
Q 010470 318 SKISSRHVVSAA-YDRTLKVWDLH-KGY--CVNTIIFH----------SNCNALAFSMDGQTIFSGHIDGNLRLWDIQ-T 382 (510)
Q Consensus 318 ~~~~~~~l~s~~-~dg~i~iwd~~-~~~--~~~~~~~~----------~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~-~ 382 (510)
+| +++++++++ .++.|.+||+. ++. .+..+... ..+.+++|+|+|+.++++..++.|.+||+. +
T Consensus 94 sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~ 172 (347)
T 3hfq_A 94 DE-ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA 172 (347)
T ss_dssp ET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT
T ss_pred CC-CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC
Confidence 99 777777776 68999999995 332 23333221 137789999999976777778899999998 4
Q ss_pred Cceee--eecccccccEEEEEEcCCCCEEEE-EecCCcEEEEEcCC--ceee--eEeecCCCe--eecCceeEEEcCCCC
Q 010470 383 GKLLS--EVAAHSLAAVTSISLSRSGNIILT-SGRDNLHNLFDIRS--LEVC--GSLRATGNR--VASNWSRSCISPDES 453 (510)
Q Consensus 383 ~~~~~--~~~~~~~~~i~~i~~~~~~~~l~~-~~~d~~i~i~d~~~--~~~~--~~~~~~~~~--~~~~~~~~~~s~~~~ 453 (510)
++... .+.......+..++|+|+|+++++ +..++.+.+|++.. +... ..+...... .......++|+|||+
T Consensus 173 g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~ 252 (347)
T 3hfq_A 173 GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGH 252 (347)
T ss_dssp SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSC
T ss_pred CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCC
Confidence 54322 223333246888999999996666 55678999999874 4432 222221110 012244589999999
Q ss_pred EEE-EEcCCCeEEEEeCCCc---ceeecccccCcCEEEEEEeCCCCcEEEeeC-CCeEEEc
Q 010470 454 YVA-AGSADGSVYIWSISKA---DIVRTLKEHTAPVLSCSWSGLGKPLASADK-NGVVCVW 509 (510)
Q Consensus 454 ~l~-~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~iw 509 (510)
+|+ ++..++.|.+|++... ..+..+..+...+.+++|+|+|++|++++. ++.|.+|
T Consensus 253 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 253 FLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp EEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 875 5556899999998732 445555556667899999999998888775 4899998
No 148
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=5.4e-24 Score=195.74 Aligned_cols=252 Identities=12% Similarity=0.076 Sum_probs=186.8
Q ss_pred hcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC-Ccceeccccc-ccc
Q 010470 192 QQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT-GSLSSTLYGC-LGS 269 (510)
Q Consensus 192 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~-~~~ 269 (510)
...++.+.+|+... .....+..|.+.|.+++|+|+|++|++++ ++.|.+||+.+ ++.......+ ...
T Consensus 18 ~~~~~~i~~~d~~~----------~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~ 86 (297)
T 2ojh_A 18 GSMRSSIEIFNIRT----------RKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATIC 86 (297)
T ss_dssp CCCCEEEEEEETTT----------TEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCB
T ss_pred CCcceeEEEEeCCC----------CceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccccccc
Confidence 45678888887443 22335667899999999999999999987 78999999998 8776666555 478
Q ss_pred eeEEEEecCCCEEEEEe--CCC--eEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEE-EEeCCCcEEEEEC--CCC
Q 010470 270 VLDLAITHDNRSVIAAS--SSN--NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVV-SAAYDRTLKVWDL--HKG 342 (510)
Q Consensus 270 v~~~~~~~~~~~l~~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~-s~~~dg~i~iwd~--~~~ 342 (510)
+.+++|+|++++|++++ .++ .|.+|++.++. ...+..+ ..+..+.|+| ++..++ +++.++.+.+|++ .++
T Consensus 87 ~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~~~ 163 (297)
T 2ojh_A 87 NNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDIDSG 163 (297)
T ss_dssp CSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECT-TSSEEEEEEEETTEEEEEEEETTTC
T ss_pred ccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECC-CCCEEEEEECCCCceEEEEEECCCC
Confidence 89999999999999998 334 44445545544 3444433 3488999999 666555 7888999999985 445
Q ss_pred eEeeeeeecCceeEEEEcCCCCEEEEec-CCCcEEEEECC-CCceeeeecccccccEEEEEEcCCCCEEEEEecC-----
Q 010470 343 YCVNTIIFHSNCNALAFSMDGQTIFSGH-IDGNLRLWDIQ-TGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD----- 415 (510)
Q Consensus 343 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----- 415 (510)
...........+.+++|+|+|+.|++++ .++.+.+|++. .+.....+..+. ..+.++.|+|+|++|++++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~~~ 242 (297)
T 2ojh_A 164 VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSA-YGDWFPHPSPSGDKVVFVSYDADVFD 242 (297)
T ss_dssp CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCS-EEEEEEEECTTSSEEEEEEEETTCCS
T ss_pred cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCC-cccCCeEECCCCCEEEEEEcCCCCCc
Confidence 5443334445689999999999887655 58899999876 455566666554 789999999999999888765
Q ss_pred ------CcEEEEEcCCceeeeEe--ecCCCeeecCceeEEEcCCCCEEEEEcCCC
Q 010470 416 ------NLHNLFDIRSLEVCGSL--RATGNRVASNWSRSCISPDESYVAAGSADG 462 (510)
Q Consensus 416 ------~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg 462 (510)
+.|.+||+.+++..... ..+...+ ..++|+|+|++|++++.+.
T Consensus 243 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~----~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 243 HPRDLDVRVQLMDMDGGNVETLFDLFGGQGTM----NSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp CCSSEEEEEEEEETTSCSCEEEEEEEESTTTS----CSCCBCTTSSEEEEEEECC
T ss_pred ccccCceEEEEEecCCCCceeeeccCCCCccc----ccceECCCCCEEEEEEecc
Confidence 56999999887654333 2333333 3378999999998887653
No 149
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.93 E-value=6.3e-24 Score=203.70 Aligned_cols=291 Identities=15% Similarity=0.131 Sum_probs=207.0
Q ss_pred cceeeccccccceEE-----EEEecCCCEEEEeeC-CC--eEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeC
Q 010470 216 TCKHKINAHEGGCAS-----ILFEYNSARLISGGQ-DK--SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS 287 (510)
Q Consensus 216 ~~~~~~~~h~~~v~~-----~~~s~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 287 (510)
.....+..|.+.+.. .+|||||++|+.++. +| .|.+||+.+++......++...+..+.|+|||+.|+.++.
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~ 100 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKD 100 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEET
T ss_pred cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeC
Confidence 355666777766665 889999999998887 66 4888899998887777677666667899999999999999
Q ss_pred CCeEEEEEcCCCCeeEeecCCCCceEEEEE--ecCCCCEEEEE----------------------eCCCcEEEEECCCCe
Q 010470 288 SNNLYVWDVNSGRVRHTLTGHTDKVCAVDV--SKISSRHVVSA----------------------AYDRTLKVWDLHKGY 343 (510)
Q Consensus 288 d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~~~~l~s~----------------------~~dg~i~iwd~~~~~ 343 (510)
++.|++||+.+++....+..+...+....| +| ++..++.. +.++.|.+||+.++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 179 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE 179 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc
Confidence 999999999999877777666665544443 66 66666632 245789999999988
Q ss_pred EeeeeeecCceeEEEEcC-CCCEEEEecCC------CcEEEEECCCCceeeeeccccc-ccEEEEEEcCCCCEEEEEec-
Q 010470 344 CVNTIIFHSNCNALAFSM-DGQTIFSGHID------GNLRLWDIQTGKLLSEVAAHSL-AAVTSISLSRSGNIILTSGR- 414 (510)
Q Consensus 344 ~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~- 414 (510)
..........+..+.|+| +|+.|+....+ ..|.++|...+.. ..+..+.. ..+..+.|+|+|+.|+..+.
T Consensus 180 ~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 180 STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecC
Confidence 766666666789999999 99988866543 3788888865543 33333321 35778999999997755443
Q ss_pred CC----cEEEEEcCCceeeeEeecCCCe-eecCceeEEEcCCCCEEEEE---------cCCCeEEEEeCCCcceeecccc
Q 010470 415 DN----LHNLFDIRSLEVCGSLRATGNR-VASNWSRSCISPDESYVAAG---------SADGSVYIWSISKADIVRTLKE 480 (510)
Q Consensus 415 d~----~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~---------~~dg~i~iwd~~~~~~~~~~~~ 480 (510)
++ .|++||+.+++........... .........|+|||+.|+.. ..+..|++||+.+++. ..+..
T Consensus 259 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~ 337 (388)
T 3pe7_A 259 KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVAR 337 (388)
T ss_dssp TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEE
T ss_pred CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEecc
Confidence 22 3999999988754332222200 00111224689999988754 4466899999988765 34444
Q ss_pred cCc-----------CEEEEEEeCCCCcEEEee-CCCeEEEc
Q 010470 481 HTA-----------PVLSCSWSGLGKPLASAD-KNGVVCVW 509 (510)
Q Consensus 481 ~~~-----------~v~~~~~~~~~~~l~s~~-~dg~i~iw 509 (510)
|.. .+.+++|+|||+.|+.++ .+|...+|
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~ 378 (388)
T 3pe7_A 338 HDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY 378 (388)
T ss_dssp CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred ccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence 544 578899999999877655 56776666
No 150
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.93 E-value=6.5e-24 Score=200.38 Aligned_cols=261 Identities=10% Similarity=0.132 Sum_probs=191.8
Q ss_pred EEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccc-cceeEEEEecCCCEEEEE-eCCCeEEEEEcCCCCeeEeecC
Q 010470 230 SILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCL-GSVLDLAITHDNRSVIAA-SSSNNLYVWDVNSGRVRHTLTG 307 (510)
Q Consensus 230 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~ 307 (510)
++++++++.++++++.++.|.+||+.+++.+..+..+. ..+..++|+|++++++++ ..++.|.+||+.+++....+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45678889999999999999999999998877766443 257889999999976655 4689999999999988777653
Q ss_pred CC------CceEEEEEecCCCCEEEEEeCC------------CcEEEEECCCCe---EeeeeeecCceeEEEEcCCCCEE
Q 010470 308 HT------DKVCAVDVSKISSRHVVSAAYD------------RTLKVWDLHKGY---CVNTIIFHSNCNALAFSMDGQTI 366 (510)
Q Consensus 308 ~~------~~v~~i~~~~~~~~~l~s~~~d------------g~i~iwd~~~~~---~~~~~~~~~~i~~i~~~~~~~~l 366 (510)
+. ..+.+++|+| +++++++++.+ +.|.+||+.+++ .+..+..+..+.+++|+|+|+ +
T Consensus 84 ~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-L 161 (349)
T ss_dssp CCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-E
T ss_pred ccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-E
Confidence 32 2378899999 78888887755 899999998743 334445556688999999999 5
Q ss_pred EEecCCCcEEEEECCCCceeeeecccccc-----------------------cEEEEEEcCCCCE-----------EEEE
Q 010470 367 FSGHIDGNLRLWDIQTGKLLSEVAAHSLA-----------------------AVTSISLSRSGNI-----------ILTS 412 (510)
Q Consensus 367 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----------------------~i~~i~~~~~~~~-----------l~~~ 412 (510)
++++. .|.+||+.+++....+...... .+.++.+++++.. +...
T Consensus 162 ~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 55543 4999999999887766543100 3455677765421 1122
Q ss_pred ecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEe
Q 010470 413 GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP-DESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWS 491 (510)
Q Consensus 413 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 491 (510)
..++.+.+|++.. . ...+..++++| +|++++++ ++.|.+||+.+++.+..+..+ ..+.+++|+
T Consensus 240 ~~~~~~~~~~~~~---------~----~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s 303 (349)
T 1jmx_B 240 LKTGKTHTQEFAD---------L----TELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFD 303 (349)
T ss_dssp TTTCCEEEEEEEE---------C----SSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEEC
T ss_pred ccCCcEEeccccc---------C----CCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEEC
Confidence 2334444444321 1 12234588999 99999988 889999999999887777643 356799999
Q ss_pred CCCCcEEEeeCCCeEEEcC
Q 010470 492 GLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 492 ~~~~~l~s~~~dg~i~iwd 510 (510)
|+|++|++++.++.|.+||
T Consensus 304 ~dg~~l~~~~~~~~v~v~d 322 (349)
T 1jmx_B 304 KKGDKLYLGGTFNDLAVFN 322 (349)
T ss_dssp SSSSCEEEESBSSEEEEEE
T ss_pred CCCCEEEEecCCCeEEEEe
Confidence 9999999888899999996
No 151
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=1.5e-23 Score=225.94 Aligned_cols=275 Identities=9% Similarity=0.050 Sum_probs=214.4
Q ss_pred cccceEEEEEe-cCCCEEEEeeCCCeEEEEeCCCCcceeccccccc-ceeEEEEecCCCEEEEEeCCCeEE-EEEcCCCC
Q 010470 224 HEGGCASILFE-YNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLG-SVLDLAITHDNRSVIAASSSNNLY-VWDVNSGR 300 (510)
Q Consensus 224 h~~~v~~~~~s-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~-iwd~~~~~ 300 (510)
|.+.+.+++|| |||++|++++ ++.|.+|++.++.... +..|.. .+..++|+ ||+.+++++.++.+. +|++.+++
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~ 370 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK 370 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC
T ss_pred cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC
Confidence 45579999999 9999999988 8899999998776543 566777 89999999 999999999888899 99998776
Q ss_pred eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCC------
Q 010470 301 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDG------ 373 (510)
Q Consensus 301 ~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg------ 373 (510)
... +.+|...+..++|+| ++..|++++.++.|++||+.+++.......+ ..+.+++|+|||++|++++.++
T Consensus 371 ~~~-l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~ 448 (1045)
T 1k32_A 371 AEK-FEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDG 448 (1045)
T ss_dssp EEE-CCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCS
T ss_pred ceE-ecCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccC
Confidence 554 347888999999999 8999999999999999999999887776444 4579999999999998876544
Q ss_pred ----cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeee-------Ee--e-------
Q 010470 374 ----NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCG-------SL--R------- 433 (510)
Q Consensus 374 ----~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-------~~--~------- 433 (510)
.|++||+.+++ ...+..+. ..+.++.|+|+|++|++++.++...+|+........ .+ .
T Consensus 449 ~~~~~i~l~d~~~g~-~~~l~~~~-~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (1045)
T 1k32_A 449 YVMQAIHVYDMEGRK-IFAATTEN-SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPT 526 (1045)
T ss_dssp CCEEEEEEEETTTTE-EEECSCSS-SBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGG
T ss_pred CCCCeEEEEECCCCc-EEEeeCCC-cccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCcc
Confidence 89999998887 55555554 678899999999999999988877777754332200 00 0
Q ss_pred ---------------cCC--------CeeecCceeEEEcCCCCEEEE-------------EcCCCeEEEEeCCCcceeec
Q 010470 434 ---------------ATG--------NRVASNWSRSCISPDESYVAA-------------GSADGSVYIWSISKADIVRT 477 (510)
Q Consensus 434 ---------------~~~--------~~~~~~~~~~~~s~~~~~l~~-------------~~~dg~i~iwd~~~~~~~~~ 477 (510)
... ......+..++++|||.++++ ....+.|++||+.+++....
T Consensus 527 ~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l 606 (1045)
T 1k32_A 527 KLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV 606 (1045)
T ss_dssp GCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEE
T ss_pred ccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEe
Confidence 000 001123456889999988875 12345789999988775332
Q ss_pred ccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 478 LKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 478 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
. ..+.+++|||||+.|++++.+ .|++||
T Consensus 607 ~----~~v~~~~~S~DG~~l~~~~~~-~i~~~d 634 (1045)
T 1k32_A 607 K----NNLTDLRLSADRKTVMVRKDD-GKIYTF 634 (1045)
T ss_dssp E----EEEEEEEECTTSCEEEEEETT-SCEEEE
T ss_pred e----cCcceEEECCCCCEEEEEcCC-cEEEEe
Confidence 2 568899999999999998866 788885
No 152
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=7.4e-23 Score=193.47 Aligned_cols=239 Identities=11% Similarity=0.131 Sum_probs=191.9
Q ss_pred ccceeEEEEecCCCEEEEEeC-------CCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCC-EEEEEeCCCcEEEEE
Q 010470 267 LGSVLDLAITHDNRSVIAASS-------SNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR-HVVSAAYDRTLKVWD 338 (510)
Q Consensus 267 ~~~v~~~~~~~~~~~l~~~~~-------d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~-~l~s~~~dg~i~iwd 338 (510)
...+..++|+|+++++++++. ++.|.+||..+++....+.. ...+.++.|+| +++ +++++..++.|.+||
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINN-TTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEET-TTTEEEEEETTTTEEEEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECC-CCCEEEEEecCCCEEEEEe
Confidence 456789999999999988874 56899999999998888764 34577899999 565 555666689999999
Q ss_pred CCCCeEeeeeeecC----------ceeEEEEcCCCCEEEEec--CCCcEEEEECCCCceeeeecccccccEEEEEEcCCC
Q 010470 339 LHKGYCVNTIIFHS----------NCNALAFSMDGQTIFSGH--IDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSG 406 (510)
Q Consensus 339 ~~~~~~~~~~~~~~----------~i~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~ 406 (510)
+.+++.+..+..+. .+.+++|+|+|+.+++++ .++.|.+||+.+++....+.... ..+.++.|+|+|
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~s~dg 196 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTG-KMSTGLALDSEG 196 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCC-TTCCCCEEETTT
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCC-CccceEEECCCC
Confidence 99999888776643 268899999999887765 47889999999999888877443 558889999999
Q ss_pred CEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC-CCeEEEEeCCCcceeecccccCcCE
Q 010470 407 NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA-DGSVYIWSISKADIVRTLKEHTAPV 485 (510)
Q Consensus 407 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v 485 (510)
+++++++.++.+.+||+.+++....+..........+..++|+|+|+++++++. ++.|.+||+.+++.+..+..+. .
T Consensus 197 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~ 274 (353)
T 3vgz_A 197 KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--S 274 (353)
T ss_dssp TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--C
T ss_pred CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--C
Confidence 999999999999999999999887776533322333455899999998776655 5899999999998887776543 2
Q ss_pred EEEEEeCCCCcEEEee-CCCeEEEcC
Q 010470 486 LSCSWSGLGKPLASAD-KNGVVCVWT 510 (510)
Q Consensus 486 ~~~~~~~~~~~l~s~~-~dg~i~iwd 510 (510)
.+++|+|+|+++++++ .++.|.+||
T Consensus 275 ~~~~~s~dg~~l~v~~~~~~~v~~~d 300 (353)
T 3vgz_A 275 LAVLFNPARNEAYVTHRQAGKVSVID 300 (353)
T ss_dssp CCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ceEEECCCCCEEEEEECCCCeEEEEE
Confidence 5799999999665544 789999996
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=4e-22 Score=188.01 Aligned_cols=248 Identities=16% Similarity=0.240 Sum_probs=175.0
Q ss_pred cccccceEEEEEecCCCEEEEeeC---CCeEEEEeCCCCc--ceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEE
Q 010470 222 NAHEGGCASILFEYNSARLISGGQ---DKSIKLWDTNTGS--LSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWD 295 (510)
Q Consensus 222 ~~h~~~v~~~~~s~~~~~l~s~~~---dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd 295 (510)
..+...+..++|+|+|+ |++++. ++.|.+|++.++. .+..+..+...+..++|+|+|++|++++ .++.|.+|+
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~ 114 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK 114 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 34567788999999999 555544 6899999997765 3444455777889999999999999888 678999999
Q ss_pred cCC-CC--eeEeecC---------CCCceEEEEEecCCCCEEEEEeCCCcEEEEECC-CCeEeee--eee--cCceeEEE
Q 010470 296 VNS-GR--VRHTLTG---------HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH-KGYCVNT--IIF--HSNCNALA 358 (510)
Q Consensus 296 ~~~-~~--~~~~~~~---------~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~--~~~--~~~i~~i~ 358 (510)
+.. +. .+..+.. +...+.+++|+| +++++++...++.|.+||+. ++..... +.. ...+..++
T Consensus 115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~ 193 (347)
T 3hfq_A 115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLV 193 (347)
T ss_dssp ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEE
T ss_pred eCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEE
Confidence 963 33 2233321 123488899999 66677777778899999998 5543322 222 23578899
Q ss_pred EcCCCCEEEE-ecCCCcEEEEECCC--Cce--eeeecccc-----cccEEEEEEcCCCCEEE-EEecCCcEEEEEcCC--
Q 010470 359 FSMDGQTIFS-GHIDGNLRLWDIQT--GKL--LSEVAAHS-----LAAVTSISLSRSGNIIL-TSGRDNLHNLFDIRS-- 425 (510)
Q Consensus 359 ~~~~~~~l~~-~~~dg~i~i~d~~~--~~~--~~~~~~~~-----~~~i~~i~~~~~~~~l~-~~~~d~~i~i~d~~~-- 425 (510)
|+|+|+++++ +..++.|.+|++.. ++. ...+.... ...+..++|+|+|++|+ ++..++.|.+|++..
T Consensus 194 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g 273 (347)
T 3hfq_A 194 FSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG 273 (347)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC
Confidence 9999996665 56788999999874 443 22222221 13588999999999875 455689999999973
Q ss_pred -ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC-CCeEEEE--eCCCccee
Q 010470 426 -LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA-DGSVYIW--SISKADIV 475 (510)
Q Consensus 426 -~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iw--d~~~~~~~ 475 (510)
...+..+..+... ...++|+|||++|++++. ++.|.+| |..++++.
T Consensus 274 ~~~~~~~~~~~~~~----~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 274 HLTLIQQISTEGDF----PRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp CEEEEEEEECSSSC----CCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred cEEEeEEEecCCCC----cCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 2444444433322 234899999998887765 4899999 44556554
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.91 E-value=1.4e-21 Score=185.44 Aligned_cols=267 Identities=13% Similarity=0.150 Sum_probs=180.9
Q ss_pred CEEEEee----CCCeEEEEeC--CCCcceecccccccceeEEEEecCCCEEEEEeCC----CeEEEEEcCC--CC--eeE
Q 010470 238 ARLISGG----QDKSIKLWDT--NTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS----NNLYVWDVNS--GR--VRH 303 (510)
Q Consensus 238 ~~l~s~~----~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~--~~--~~~ 303 (510)
.++++|+ .++.|.+|.+ .+++.......+...+..++|+|++++|++++.+ +.|.+|++.. +. .+.
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~ 93 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN 93 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence 3455553 4568999876 4455432222267778889999999999999875 7999999876 43 233
Q ss_pred eecCCCCceEEEEEecCCCCEEEEEe-CCCcEEEEECCCCeEeeee----ee-----------cCceeEEEEcCCCCEEE
Q 010470 304 TLTGHTDKVCAVDVSKISSRHVVSAA-YDRTLKVWDLHKGYCVNTI----IF-----------HSNCNALAFSMDGQTIF 367 (510)
Q Consensus 304 ~~~~~~~~v~~i~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~----~~-----------~~~i~~i~~~~~~~~l~ 367 (510)
....+......+++ +++++++++ .++.|.+|++.....+..+ .. ...+.+++|+|+|++++
T Consensus 94 ~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~ 170 (361)
T 3scy_A 94 TQKTMGADPCYLTT---NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL 170 (361)
T ss_dssp EEECSSSCEEEEEE---CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred EeccCCCCcEEEEE---CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence 34445566777777 455555554 6889999999754322211 11 11247899999999666
Q ss_pred E-ecCCCcEEEEECCCCce------e------eeecccccccEEEEEEcCCCCEEEEEe-cCCcEEEEEcCCceee--eE
Q 010470 368 S-GHIDGNLRLWDIQTGKL------L------SEVAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDIRSLEVC--GS 431 (510)
Q Consensus 368 ~-~~~dg~i~i~d~~~~~~------~------~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~--~~ 431 (510)
+ +..++.|.+|++..... + ..........+..++|+|+|+++++++ .++.|.+|++.++... ..
T Consensus 171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~ 250 (361)
T 3scy_A 171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT 250 (361)
T ss_dssp EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE
T ss_pred EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE
Confidence 5 44588999998875431 1 122223336788999999999887777 6899999999876542 22
Q ss_pred eecCCCeeecCceeEEEcCCCCEEEEEcC--CCeEEEEeCC--Ccc--eeecccccCcCEEEEEEeCCCCcEEEee-CCC
Q 010470 432 LRATGNRVASNWSRSCISPDESYVAAGSA--DGSVYIWSIS--KAD--IVRTLKEHTAPVLSCSWSGLGKPLASAD-KNG 504 (510)
Q Consensus 432 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--dg~i~iwd~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg 504 (510)
+...... ......++|+|||++|++++. ++.|.+|++. +++ .+..+.. ...+.+++|+|+|++|++++ .++
T Consensus 251 ~~~~~~~-~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~ 328 (361)
T 3scy_A 251 VAADTVN-AQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTN 328 (361)
T ss_dssp EESCSSC-CCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTT
T ss_pred EecCCCC-CCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCC
Confidence 2221111 112345899999999876655 4899999986 344 3444443 45678999999999888877 678
Q ss_pred eEEEc
Q 010470 505 VVCVW 509 (510)
Q Consensus 505 ~i~iw 509 (510)
.|.+|
T Consensus 329 ~v~v~ 333 (361)
T 3scy_A 329 VIQIF 333 (361)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 89986
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.91 E-value=9.6e-22 Score=190.15 Aligned_cols=200 Identities=12% Similarity=0.086 Sum_probs=156.2
Q ss_pred ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc----------cee-----cccccccceeEEEEecCCCEEE----EE
Q 010470 225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGS----------LSS-----TLYGCLGSVLDLAITHDNRSVI----AA 285 (510)
Q Consensus 225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~----------~~~-----~~~~~~~~v~~~~~~~~~~~l~----~~ 285 (510)
...++.+++++++.++++++.++ ++||+..... ... ....+...|.+++|+|++++|+ ++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 44689999999999999999888 8888753110 000 0123456799999999999999 67
Q ss_pred eCCCeEEEEEcCCC--------Ce---eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee-cCc
Q 010470 286 SSSNNLYVWDVNSG--------RV---RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF-HSN 353 (510)
Q Consensus 286 ~~d~~i~iwd~~~~--------~~---~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~ 353 (510)
+.|+.|++||+.++ +. ...+.+|...|.+++|+|..+.+|++++.||+|++||++++..+..... ...
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~ 194 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA 194 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence 78999999998764 22 4556779999999999995589999999999999999998876655444 356
Q ss_pred eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccc------cccEEEEEEcCCCCEEEEEe-cCC------cEEE
Q 010470 354 CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS------LAAVTSISLSRSGNIILTSG-RDN------LHNL 420 (510)
Q Consensus 354 i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~i~~i~~~~~~~~l~~~~-~d~------~i~i 420 (510)
+.+++|+|+|++|++|+.||.|++||++ ++....+..+. ...+.++.|++++.++++.+ .+| .+++
T Consensus 195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i 273 (434)
T 2oit_A 195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVM 273 (434)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEE
T ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEE
Confidence 9999999999999999999999999998 55555444321 13799999999888775533 333 3889
Q ss_pred EEcCCc
Q 010470 421 FDIRSL 426 (510)
Q Consensus 421 ~d~~~~ 426 (510)
|++++.
T Consensus 274 ~~l~~~ 279 (434)
T 2oit_A 274 ALLPKK 279 (434)
T ss_dssp EECCCT
T ss_pred EEeccC
Confidence 999864
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.90 E-value=3.3e-21 Score=182.76 Aligned_cols=260 Identities=13% Similarity=0.183 Sum_probs=180.6
Q ss_pred cccceEEEEEecCCCEEEEeeCC----CeEEEEeCCC--Ccc--eecccccccceeEEEEecCCCEEEEEe-CCCeEEEE
Q 010470 224 HEGGCASILFEYNSARLISGGQD----KSIKLWDTNT--GSL--SSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVW 294 (510)
Q Consensus 224 h~~~v~~~~~s~~~~~l~s~~~d----g~i~iwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iw 294 (510)
|...+..++|+|+|++|++++.+ +.|.+|++.. +.. +.....+...+..+++ +++++++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 67788899999999999998876 7999998865 433 3333445556677777 888888777 57899999
Q ss_pred EcCCCCeeEee------cC--------CCCceEEEEEecCCCCEEEE-EeCCCcEEEEECCCCeE--------------e
Q 010470 295 DVNSGRVRHTL------TG--------HTDKVCAVDVSKISSRHVVS-AAYDRTLKVWDLHKGYC--------------V 345 (510)
Q Consensus 295 d~~~~~~~~~~------~~--------~~~~v~~i~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~--------------~ 345 (510)
++.....+..+ .+ +...+.+++|+| +++++++ +..++.|.+|++..... .
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~ 204 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA 204 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence 99754322211 11 123458899999 6765544 44588999998875431 1
Q ss_pred eeeeecCceeEEEEcCCCCEEEEec-CCCcEEEEECCCCce--eeeeccc--ccccEEEEEEcCCCCEEEEEecC--CcE
Q 010470 346 NTIIFHSNCNALAFSMDGQTIFSGH-IDGNLRLWDIQTGKL--LSEVAAH--SLAAVTSISLSRSGNIILTSGRD--NLH 418 (510)
Q Consensus 346 ~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d--~~i 418 (510)
........+..++|+|+|+++++++ .++.|.+||+.++.. +..+... ....+..++|+|+|++|+++..+ +.|
T Consensus 205 ~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i 284 (361)
T 3scy_A 205 FKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGV 284 (361)
T ss_dssp EECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEE
T ss_pred eecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEE
Confidence 1222334588999999999887666 689999999987754 2222221 12457899999999998777665 899
Q ss_pred EEEEcC--Cce--eeeEeecCCCeeecCceeEEEcCCCCEEEEEc-CCCeEEEEe--CCCcceeecc-cccCcCEEEEEE
Q 010470 419 NLFDIR--SLE--VCGSLRATGNRVASNWSRSCISPDESYVAAGS-ADGSVYIWS--ISKADIVRTL-KEHTAPVLSCSW 490 (510)
Q Consensus 419 ~i~d~~--~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd--~~~~~~~~~~-~~~~~~v~~~~~ 490 (510)
.+|++. ++. .+..+.. . .....++|+|+|++|++++ .++.|.+|+ ..+++..... ..+...+.|+.|
T Consensus 285 ~v~~~~~~~g~~~~~~~~~~-g----~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~ 359 (361)
T 3scy_A 285 AIFKVDETNGTLTKVGYQLT-G----IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKF 359 (361)
T ss_dssp EEEEECTTTCCEEEEEEEEC-S----SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred EEEEEcCCCCcEEEeeEecC-C----CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEE
Confidence 999996 344 3333333 2 1233489999999888877 678999965 4567665544 235567899998
Q ss_pred e
Q 010470 491 S 491 (510)
Q Consensus 491 ~ 491 (510)
.
T Consensus 360 ~ 360 (361)
T 3scy_A 360 V 360 (361)
T ss_dssp E
T ss_pred c
Confidence 6
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.90 E-value=6.2e-23 Score=213.07 Aligned_cols=273 Identities=11% Similarity=0.083 Sum_probs=193.5
Q ss_pred EEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccccc---ceeEEEEecCCCEEEEEeC---------CCeEEEEEcC
Q 010470 230 SILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLG---SVLDLAITHDNRSVIAASS---------SNNLYVWDVN 297 (510)
Q Consensus 230 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------d~~i~iwd~~ 297 (510)
+++|+|+|.+++++ .|+.|++||+.+++....+.++.. .+.+++|+|||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 67899999655554 699999999999987666655544 4899999999999998876 7899999999
Q ss_pred CCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-------------------ceeEEE
Q 010470 298 SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-------------------NCNALA 358 (510)
Q Consensus 298 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------------------~i~~i~ 358 (510)
+++.+.... ....+..++|+| +++.|+++. ++.|++||+.++.......... ...+++
T Consensus 99 ~g~~~~~~~-l~~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~ 175 (719)
T 1z68_A 99 NGEFVRGNE-LPRPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALW 175 (719)
T ss_dssp TTEECCSSC-CCSSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred CCcccccee-cCcccccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEE
Confidence 887631111 135688899999 788888876 7899999998887654332211 115899
Q ss_pred EcCCCCEEEEecCCC----------------------------------cEEEEECCCCcee--eee------ccccccc
Q 010470 359 FSMDGQTIFSGHIDG----------------------------------NLRLWDIQTGKLL--SEV------AAHSLAA 396 (510)
Q Consensus 359 ~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~--~~~------~~~~~~~ 396 (510)
|+|||+.|++++.|. .|++||+.+++.. ..+ ..+. ..
T Consensus 176 wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~ 254 (719)
T 1z68_A 176 WSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD-YY 254 (719)
T ss_dssp ECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC-EE
T ss_pred ECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc-ce
Confidence 999999999877542 7889999887643 112 2233 67
Q ss_pred EEEEEEcCCCCEEEEEecC----CcEEEEE----cCCceeeeEe----ecCCCeeec-CceeEEEcCCCCEEEE--EcCC
Q 010470 397 VTSISLSRSGNIILTSGRD----NLHNLFD----IRSLEVCGSL----RATGNRVAS-NWSRSCISPDESYVAA--GSAD 461 (510)
Q Consensus 397 i~~i~~~~~~~~l~~~~~d----~~i~i~d----~~~~~~~~~~----~~~~~~~~~-~~~~~~~s~~~~~l~~--~~~d 461 (510)
+.+++|+||++++++.... ..|.+|| +.+++....+ ..+...+.. ....+.|+|||+.|+. +..+
T Consensus 255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 334 (719)
T 1z68_A 255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKD 334 (719)
T ss_dssp EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTT
T ss_pred EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccC
Confidence 8999999998877764433 2488899 7777665444 233322220 0113789999996554 4445
Q ss_pred C--eEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCC-----CeEEEc
Q 010470 462 G--SVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKN-----GVVCVW 509 (510)
Q Consensus 462 g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~iw 509 (510)
| .|++|++.+++ ...+..+...+..+.++ +++.|+..+.+ +.+.+|
T Consensus 335 g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~ 387 (719)
T 1z68_A 335 GYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIY 387 (719)
T ss_dssp SCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEE
T ss_pred CceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEE
Confidence 5 57778887766 44555566678888877 78777766554 777777
No 158
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.89 E-value=5.4e-22 Score=190.68 Aligned_cols=275 Identities=13% Similarity=0.030 Sum_probs=190.2
Q ss_pred cceEEEEEecCCCEEEEeeCC---CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCee
Q 010470 226 GGCASILFEYNSARLISGGQD---KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR 302 (510)
Q Consensus 226 ~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 302 (510)
..+.+++|||||++|+.+... ..|.+||+.+++......++......+.|+|||++|+.++.++.|++||+.+++..
T Consensus 36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~ 115 (396)
T 3c5m_A 36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ 115 (396)
T ss_dssp CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcE
Confidence 347888999999998776543 47888999888765443333333344889999999999999999999999988876
Q ss_pred EeecCCCCceEE-------------------EEEecCCCCEEEEE-----eCCCcEEEEECCCCeEeeeeeecCceeEEE
Q 010470 303 HTLTGHTDKVCA-------------------VDVSKISSRHVVSA-----AYDRTLKVWDLHKGYCVNTIIFHSNCNALA 358 (510)
Q Consensus 303 ~~~~~~~~~v~~-------------------i~~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~ 358 (510)
.....+...... +.|+| ++..++.+ ..+..|.+||+.++...........+..+.
T Consensus 116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~ 194 (396)
T 3c5m_A 116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPI 194 (396)
T ss_dssp EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEE
T ss_pred EEEecccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccce
Confidence 655544443222 23455 44444433 356789999999888766666666789999
Q ss_pred EcC-CCCEEEEecCC------CcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC-----CcEEEEEcCCc
Q 010470 359 FSM-DGQTIFSGHID------GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD-----NLHNLFDIRSL 426 (510)
Q Consensus 359 ~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~i~d~~~~ 426 (510)
|+| ++..|+..+.+ ..|.+||+..+.............+..+.|+|+|++|+..+.+ +.|++||+.++
T Consensus 195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (396)
T 3c5m_A 195 YRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL 274 (396)
T ss_dssp EETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred ECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence 999 78877655433 4689999876553332221112468889999999987776544 34999999887
Q ss_pred eeeeEeecCCCeeecCceeEEEcC-CCCEEEEEc----------------CCCeEEEEeCCCcceeecccccCc------
Q 010470 427 EVCGSLRATGNRVASNWSRSCISP-DESYVAAGS----------------ADGSVYIWSISKADIVRTLKEHTA------ 483 (510)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~----------------~dg~i~iwd~~~~~~~~~~~~~~~------ 483 (510)
+......... .. +.|+| +|+++++++ .++.|++||+.+++.. .+..+..
T Consensus 275 ~~~~l~~~~~------~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~ 346 (396)
T 3c5m_A 275 ENEEVMVMPP------CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLD 346 (396)
T ss_dssp CEEEEEECCS------EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBT
T ss_pred CeEEeeeCCC------CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCcccccc
Confidence 6544332221 12 67899 999888754 3478999999887643 3444443
Q ss_pred -----CEEEEEEeCCCCcEEEeeC-CCeEEEc
Q 010470 484 -----PVLSCSWSGLGKPLASADK-NGVVCVW 509 (510)
Q Consensus 484 -----~v~~~~~~~~~~~l~s~~~-dg~i~iw 509 (510)
.+..++|+|+|+.|+.++. ++...+|
T Consensus 347 ~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~ 378 (396)
T 3c5m_A 347 GDRQITHPHPSFTPNDDGVLFTSDFEGVPAIY 378 (396)
T ss_dssp TBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred ccccCCCCCceEccCCCeEEEEecCCCCceEE
Confidence 2567899999998877654 5555554
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.89 E-value=2.6e-21 Score=183.58 Aligned_cols=270 Identities=13% Similarity=0.112 Sum_probs=180.8
Q ss_pred EEEEeeCC--CeEEEEeC--CCCccee--ccc-ccccceeEEEEecCCCEEEEEeCCCeEEEEEcC-CCCeeEeecCC-C
Q 010470 239 RLISGGQD--KSIKLWDT--NTGSLSS--TLY-GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVN-SGRVRHTLTGH-T 309 (510)
Q Consensus 239 ~l~s~~~d--g~i~iwd~--~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~-~ 309 (510)
++++|+.. +.|.+|++ .+++... ... .....+..++|+|++++|++++.+ .|.+|++. +++........ .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 34555542 46777664 4554321 111 233467899999999999999888 99999997 77665433211 1
Q ss_pred CceEEEEEecCCCC--EEEEEe-------------CCCcEEEEECC-CCeEeeeee-----ecCceeEEEEcCCCCEEEE
Q 010470 310 DKVCAVDVSKISSR--HVVSAA-------------YDRTLKVWDLH-KGYCVNTII-----FHSNCNALAFSMDGQTIFS 368 (510)
Q Consensus 310 ~~v~~i~~~~~~~~--~l~s~~-------------~dg~i~iwd~~-~~~~~~~~~-----~~~~i~~i~~~~~~~~l~~ 368 (510)
+.+.+++|+| +++ ++++++ .+|.+.+|++. ++.....+. ....+.+++|+|+|+++++
T Consensus 83 g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~ 161 (365)
T 1jof_A 83 GHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS 161 (365)
T ss_dssp SSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred CCCccEEECC-CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence 2355688998 666 344553 68999999997 465544333 2345899999999998887
Q ss_pred ec-CCCcEEEEECC-CCcee--eeeccc-ccccEEEEEEcCCCCEEEEEec-CCcEEEEEcC--Cceee---eEeecCCC
Q 010470 369 GH-IDGNLRLWDIQ-TGKLL--SEVAAH-SLAAVTSISLSRSGNIILTSGR-DNLHNLFDIR--SLEVC---GSLRATGN 437 (510)
Q Consensus 369 ~~-~dg~i~i~d~~-~~~~~--~~~~~~-~~~~i~~i~~~~~~~~l~~~~~-d~~i~i~d~~--~~~~~---~~~~~~~~ 437 (510)
++ .++.|++||+. +++.. ..+... +...+..++|+|+|+++++++. ++.|.+|++. +++.. ..+.....
T Consensus 162 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~ 241 (365)
T 1jof_A 162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP 241 (365)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred EcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC
Confidence 65 46799999998 67643 223321 1267899999999999888764 6899999865 45432 12221111
Q ss_pred ---eeec------CceeEE-EcCCCCEEEEEcCC-C-----eEEEEeCC-Ccceee---cccccCcCEEEEEEeC---CC
Q 010470 438 ---RVAS------NWSRSC-ISPDESYVAAGSAD-G-----SVYIWSIS-KADIVR---TLKEHTAPVLSCSWSG---LG 494 (510)
Q Consensus 438 ---~~~~------~~~~~~-~s~~~~~l~~~~~d-g-----~i~iwd~~-~~~~~~---~~~~~~~~v~~~~~~~---~~ 494 (510)
.... ....++ |+|||++|++++.+ + .|.+|++. +++... .+..+...+..++|+| +|
T Consensus 242 ~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD 321 (365)
T ss_dssp TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC
Confidence 0000 234588 99999998876543 2 89999986 565443 2333444567899999 89
Q ss_pred CcEEEeeCC-CeEEEcC
Q 010470 495 KPLASADKN-GVVCVWT 510 (510)
Q Consensus 495 ~~l~s~~~d-g~i~iwd 510 (510)
++|++++.+ +.|.+|+
T Consensus 322 ~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYR 338 (365)
T ss_dssp TEEEEECSSSCEEEEEE
T ss_pred CEEEEEEcCCCeEEEEE
Confidence 999988764 8999985
No 160
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.89 E-value=6.8e-21 Score=179.82 Aligned_cols=268 Identities=12% Similarity=0.141 Sum_probs=198.2
Q ss_pred ceeeccccccceEEEEEecCCCEEEEee----------CCCeEEEEeCCCCcceeccccc------ccceeEEEEecCCC
Q 010470 217 CKHKINAHEGGCASILFEYNSARLISGG----------QDKSIKLWDTNTGSLSSTLYGC------LGSVLDLAITHDNR 280 (510)
Q Consensus 217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~ 280 (510)
...++..+.++ .++|+|||+++++++ .++.|.+||..+++.+..+... ......++|+|||+
T Consensus 43 ~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~ 120 (361)
T 2oiz_A 43 FLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK 120 (361)
T ss_dssp EEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS
T ss_pred EEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC
Confidence 34556666555 899999999999886 3678999999998887776532 34567899999999
Q ss_pred EEEEEeC--CCeEEEEEcCCCCeeEe-ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC-CeEeeee------ee
Q 010470 281 SVIAASS--SNNLYVWDVNSGRVRHT-LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK-GYCVNTI------IF 350 (510)
Q Consensus 281 ~l~~~~~--d~~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~------~~ 350 (510)
+|+++.. ++.|.+||+.+++.+.. +... ....+.+.|.+...+++.+.||.+.+|+... ++..... ..
T Consensus 121 ~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~ 198 (361)
T 2oiz_A 121 FIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSV 198 (361)
T ss_dssp EEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCT
T ss_pred EEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcC
Confidence 9999874 58999999999988877 5532 2233566775557888899999999999865 5544221 11
Q ss_pred cCceeEEEEcCCCCEEEEecCCCcEEEEECCCCcee--eeecccc---------cccEEEEEEcCCCCEEEEEec-----
Q 010470 351 HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL--SEVAAHS---------LAAVTSISLSRSGNIILTSGR----- 414 (510)
Q Consensus 351 ~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~---------~~~i~~i~~~~~~~~l~~~~~----- 414 (510)
......+.++|++..++..+.+|.|+++|+...... ..+.... ......++|+|+++.++++..
T Consensus 199 ~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~ 278 (361)
T 2oiz_A 199 KDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKE 278 (361)
T ss_dssp TTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCT
T ss_pred CCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCc
Confidence 222333444677877777778899999998654321 2211100 011123789999888877653
Q ss_pred ------CCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc--ceeecccccCcCEE
Q 010470 415 ------DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA--DIVRTLKEHTAPVL 486 (510)
Q Consensus 415 ------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~ 486 (510)
.+.|.+||+.+++.+..+..+. . ..++|+|||++|++++. +.|.+||..++ +.+..+..+.....
T Consensus 279 ~~~~~~~~~v~viD~~t~~~v~~i~~~~--p----~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~ 351 (361)
T 2oiz_A 279 GTHKFPAAEIWVMDTKTKQRVARIPGRD--A----LSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASL 351 (361)
T ss_dssp TCTTCCCSEEEEEETTTTEEEEEEECTT--C----CEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEE
T ss_pred ccccCCCceEEEEECCCCcEEEEEecCC--e----eEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcE
Confidence 3489999999999999987765 2 33899999999999887 99999999999 99988766777889
Q ss_pred EEEEeCCCC
Q 010470 487 SCSWSGLGK 495 (510)
Q Consensus 487 ~~~~~~~~~ 495 (510)
.++++|+|.
T Consensus 352 ~~~~~p~G~ 360 (361)
T 2oiz_A 352 QVQFHPVGG 360 (361)
T ss_dssp EEEECCCSC
T ss_pred EEEecCCCC
Confidence 999999986
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.89 E-value=5.5e-21 Score=180.24 Aligned_cols=272 Identities=13% Similarity=0.053 Sum_probs=184.4
Q ss_pred hhhhcCCceEEecccccccccccCCCccceeeccccc-cceEEEEEecCCCEEE-EeeCCCeEEEEeCCCCcceeccccc
Q 010470 189 LAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHE-GGCASILFEYNSARLI-SGGQDKSIKLWDTNTGSLSSTLYGC 266 (510)
Q Consensus 189 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~ 266 (510)
++....++.+.+|+... .+....+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++....+..+
T Consensus 14 ~v~~~~~~~v~~~d~~~---------~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~ 84 (349)
T 1jmx_B 14 MIVTNYPNNLHVVDVAS---------DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 84 (349)
T ss_dssp EEEEETTTEEEEEETTT---------TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred EEEeCCCCeEEEEECCC---------CcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc
Confidence 44556678888887443 12333444332 2578999999998664 5557899999999998877666532
Q ss_pred ------ccceeEEEEecCCCEEEEEeCC------------CeEEEEEcCCCCe---eEeecCCCCceEEEEEecCCCCEE
Q 010470 267 ------LGSVLDLAITHDNRSVIAASSS------------NNLYVWDVNSGRV---RHTLTGHTDKVCAVDVSKISSRHV 325 (510)
Q Consensus 267 ------~~~v~~~~~~~~~~~l~~~~~d------------~~i~iwd~~~~~~---~~~~~~~~~~v~~i~~~~~~~~~l 325 (510)
...+.+++|+|+|+++++++.+ +.|.+||+.+++. +..+. +...+.+++|+| ++. +
T Consensus 85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~-dg~-l 161 (349)
T 1jmx_B 85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAAD-DGS-L 161 (349)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECT-TSC-E
T ss_pred cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECC-CCc-E
Confidence 2347899999999999999865 8999999988543 33444 334688899999 666 5
Q ss_pred EEEeCCCcEEEEECCCCeEeeeeeecC-------------------------ceeEEEEcCCCCEEEEecCCC-cEEEEE
Q 010470 326 VSAAYDRTLKVWDLHKGYCVNTIIFHS-------------------------NCNALAFSMDGQTIFSGHIDG-NLRLWD 379 (510)
Q Consensus 326 ~s~~~dg~i~iwd~~~~~~~~~~~~~~-------------------------~i~~i~~~~~~~~l~~~~~dg-~i~i~d 379 (510)
++++ +.|.+||+.+++.+..+.... .+.++++++++.........+ .+..+|
T Consensus 162 ~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 5544 349999999998877765442 244566665542111100001 112244
Q ss_pred CCCCceeeeecccccccEEEEEEcC-CCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEE
Q 010470 380 IQTGKLLSEVAAHSLAAVTSISLSR-SGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAG 458 (510)
Q Consensus 380 ~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 458 (510)
..+++....-.......+.+++|+| +|++++++ ++.|.+||+.+++....+..... ...++|+|+|++|+++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~~~ 312 (349)
T 1jmx_B 240 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHT-----YYCVAFDKKGDKLYLG 312 (349)
T ss_dssp TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSC-----CCEEEECSSSSCEEEE
T ss_pred ccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCC-----ccceEECCCCCEEEEe
Confidence 4433321111111225788999999 99999988 88999999999988777764332 2348999999999988
Q ss_pred cCCCeEEEEeCCCcceeeccccc
Q 010470 459 SADGSVYIWSISKADIVRTLKEH 481 (510)
Q Consensus 459 ~~dg~i~iwd~~~~~~~~~~~~~ 481 (510)
+.++.|.+||+.+++.+..+..+
T Consensus 313 ~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 313 GTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp SBSSEEEEEETTTTEEEEEEECS
T ss_pred cCCCeEEEEeccccceeeeeecC
Confidence 88999999999999887776543
No 162
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.88 E-value=4.8e-22 Score=201.03 Aligned_cols=230 Identities=13% Similarity=0.113 Sum_probs=171.5
Q ss_pred ccceeEEEEecCCCEEEEEeC-CCeEEEEEcCCCCeeEeecCCC-CceEEEEEecCCCCEEEEEeC---CCcEEEEECCC
Q 010470 267 LGSVLDLAITHDNRSVIAASS-SNNLYVWDVNSGRVRHTLTGHT-DKVCAVDVSKISSRHVVSAAY---DRTLKVWDLHK 341 (510)
Q Consensus 267 ~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~s~~~---dg~i~iwd~~~ 341 (510)
..+|++++|+|||+.|++++. ||++.||++.++.... +..|. ..+.++.|+| + .++++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~sp-d-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGV-G-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTC-S-EEEEEEECSTTSCCEEEEEEET
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCC-C-eEEEEeccCCCCcceEEEEEec
Confidence 567999999999999999886 9999999997665544 44454 6899999998 5 67777764 44455554322
Q ss_pred ---CeEeeeeeecCceeEEEEcCCCCE-EEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC--
Q 010470 342 ---GYCVNTIIFHSNCNALAFSMDGQT-IFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD-- 415 (510)
Q Consensus 342 ---~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-- 415 (510)
+... .+.........+|+|+|+. +++...++.+.+||+.+++.......+ . .++.|+|||++|++++.+
T Consensus 98 ~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~--~--~~~~~spDG~~la~~~~~~~ 172 (582)
T 3o4h_A 98 SRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP--G--FGFVSDIRGDLIAGLGFFGG 172 (582)
T ss_dssp TSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES--S--CEEEEEEETTEEEEEEEEET
T ss_pred cCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC--C--ceEEECCCCCEEEEEEEcCC
Confidence 2222 3333344556788888863 333444455669999888765444332 2 789999999999988776
Q ss_pred --CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCC--eEEEEeCCCcceeecccccCcCEEEEE--
Q 010470 416 --NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADG--SVYIWSISKADIVRTLKEHTAPVLSCS-- 489 (510)
Q Consensus 416 --~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~-- 489 (510)
+.|++||+.+++.. .+..+.... ..++|||||++|+++..+| .|++||+.+++.. .+..|...+.+++
T Consensus 173 ~~~~i~~~d~~~g~~~-~l~~~~~~~----~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~ 246 (582)
T 3o4h_A 173 GRVSLFTSNLSSGGLR-VFDSGEGSF----SSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPT 246 (582)
T ss_dssp TEEEEEEEETTTCCCE-EECCSSCEE----EEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCS
T ss_pred CCeEEEEEcCCCCCce-EeecCCCcc----ccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhc
Confidence 78999999887764 444444333 4489999999999888888 8999999998877 7777777676677
Q ss_pred ------EeCCCCcEEEeeCCCeEEEcC
Q 010470 490 ------WSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 490 ------~~~~~~~l~s~~~dg~i~iwd 510 (510)
|+|||.++++++.||.+++|+
T Consensus 247 ~~~~~~~spdg~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 247 AITWLGYLPDGRLAVVARREGRSAVFI 273 (582)
T ss_dssp EEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred cccceeEcCCCcEEEEEEcCCcEEEEE
Confidence 999998888999999999994
No 163
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.88 E-value=1.7e-21 Score=202.16 Aligned_cols=299 Identities=11% Similarity=0.043 Sum_probs=195.5
Q ss_pred CCceEEecccccccccccCCCccceeecccccc---ceEEEEEecCCCEEEEeeC---------CCeEEEEeCCCCccee
Q 010470 194 VDGVVRRSEEGAEFFAESTVPSTCKHKINAHEG---GCASILFEYNSARLISGGQ---------DKSIKLWDTNTGSLSS 261 (510)
Q Consensus 194 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~s~~~~~l~s~~~---------dg~i~iwd~~~~~~~~ 261 (510)
.|+.+.+|+... ..+...+.+|.. .|.+++|||||++|++++. ++.|++||+.+++.+.
T Consensus 34 ~d~~i~~~~~~~---------g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~ 104 (719)
T 1z68_A 34 ADNNIVLYNIET---------GQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR 104 (719)
T ss_dssp TTSCEEEEESSS---------CCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC
T ss_pred CCCCEEEEEcCC---------CcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccc
Confidence 355666665332 223444445544 4999999999999998876 7899999999887631
Q ss_pred cccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee-cCCCCce-----------------EEEEEecCCCC
Q 010470 262 TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL-TGHTDKV-----------------CAVDVSKISSR 323 (510)
Q Consensus 262 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~v-----------------~~i~~~~~~~~ 323 (510)
... ....+..++|+|||+.|+++. ++.|++|++.+++..... .++...| .++.|+| +++
T Consensus 105 ~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~ 181 (719)
T 1z68_A 105 GNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGK 181 (719)
T ss_dssp SSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSS
T ss_pred cee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCC
Confidence 111 125688999999999999886 679999999888765433 2333222 4899999 888
Q ss_pred EEEEEeCCC----------------------------------cEEEEECCCCeEe--eee------e-ecCceeEEEEc
Q 010470 324 HVVSAAYDR----------------------------------TLKVWDLHKGYCV--NTI------I-FHSNCNALAFS 360 (510)
Q Consensus 324 ~l~s~~~dg----------------------------------~i~iwd~~~~~~~--~~~------~-~~~~i~~i~~~ 360 (510)
.|++++.|. .|.+||+.++... ..+ . ....+..++|+
T Consensus 182 ~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 261 (719)
T 1z68_A 182 FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWV 261 (719)
T ss_dssp EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEES
T ss_pred EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEe
Confidence 888877552 7889999887642 111 1 12347899999
Q ss_pred CCCCEEEEecCC----CcEEEEE----CCCCceeeeec---ccccccEE-----EEEEcCCCCEEEE--EecCC--cEEE
Q 010470 361 MDGQTIFSGHID----GNLRLWD----IQTGKLLSEVA---AHSLAAVT-----SISLSRSGNIILT--SGRDN--LHNL 420 (510)
Q Consensus 361 ~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~~---~~~~~~i~-----~i~~~~~~~~l~~--~~~d~--~i~i 420 (510)
||++++++.... ..|.+|| +.+++....+. ..+...+. .+.|+|+|+.++. +..+| .|.+
T Consensus 262 pD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~ 341 (719)
T 1z68_A 262 TDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHY 341 (719)
T ss_dssp SSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEE
T ss_pred CCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEE
Confidence 998877764332 2488999 87776554442 22224454 7899999996554 44555 5677
Q ss_pred EEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC-----CeEEEEeCCC--cce-eec----ccccCcCEEEE
Q 010470 421 FDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD-----GSVYIWSISK--ADI-VRT----LKEHTAPVLSC 488 (510)
Q Consensus 421 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~--~~~-~~~----~~~~~~~v~~~ 488 (510)
||+.++.. ..+......+ ..+.++ +++.|+..+.+ +.+.+|.+.. +.. ... +.+|...+..+
T Consensus 342 ~~~~~~~~-~~lt~~~~~v----~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~ 415 (719)
T 1z68_A 342 IKDTVENA-IQITSGKWEA----INIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTA 415 (719)
T ss_dssp ESSCSTTC-EECSCSSSCE----EEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEE
T ss_pred EECCCCce-EecccCceEE----EEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEE
Confidence 77766653 3333222222 224555 77776665554 7788887654 321 122 22366678899
Q ss_pred EEeCCCCcEEE-eeCC--CeEEEcC
Q 010470 489 SWSGLGKPLAS-ADKN--GVVCVWT 510 (510)
Q Consensus 489 ~~~~~~~~l~s-~~~d--g~i~iwd 510 (510)
.|+|++++++. ++.+ ..+.+||
T Consensus 416 ~~s~dg~~l~~~~s~~~~p~~~l~d 440 (719)
T 1z68_A 416 SFSDYAKYYALVCYGPGIPISTLHD 440 (719)
T ss_dssp EECGGGSSEEEEECCBSSCEEEEEC
T ss_pred EECCCCCEEEEEcCCCCCCeEEEEE
Confidence 99999998774 3332 3455654
No 164
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=6.1e-21 Score=184.53 Aligned_cols=215 Identities=13% Similarity=0.079 Sum_probs=158.4
Q ss_pred CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC----------CeeEe-----ecCCCCc
Q 010470 247 KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG----------RVRHT-----LTGHTDK 311 (510)
Q Consensus 247 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----------~~~~~-----~~~~~~~ 311 (510)
+.+++|+.... .....+..+++++++.++++++.++ +++|+.... ..... ...+...
T Consensus 23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 46888865311 1234678899999999999999887 888875321 01110 1135678
Q ss_pred eEEEEEecCCCCEEE----EEeCCCcEEEEECCCC--------eE---eeeeee-cCceeEEEEcCC-CCEEEEecCCCc
Q 010470 312 VCAVDVSKISSRHVV----SAAYDRTLKVWDLHKG--------YC---VNTIIF-HSNCNALAFSMD-GQTIFSGHIDGN 374 (510)
Q Consensus 312 v~~i~~~~~~~~~l~----s~~~dg~i~iwd~~~~--------~~---~~~~~~-~~~i~~i~~~~~-~~~l~~~~~dg~ 374 (510)
|.+++|+| ++++|+ +++.|+.|++||+.++ +. +..+.. ...|.+++|+|+ +.+|++++.||.
T Consensus 95 v~~l~~sp-dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~ 173 (434)
T 2oit_A 95 IHHLALSC-DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS 173 (434)
T ss_dssp EEEEEECT-TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred ccEEEEcC-CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence 99999999 788888 7888999999998654 22 222332 356999999997 889999999999
Q ss_pred EEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCee---ecCceeEEEcCC
Q 010470 375 LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRV---ASNWSRSCISPD 451 (510)
Q Consensus 375 i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~ 451 (510)
|++||++++..+.....+. ..|.+++|+|+|++|++|+.||.|++||++ +.....+..+.... ...+..++|+++
T Consensus 174 v~iwD~~~~~~~~~~~~~~-~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~ 251 (434)
T 2oit_A 174 IAVLQVTETVKVCATLPST-VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGT 251 (434)
T ss_dssp EEEEEESSSEEEEEEECGG-GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEET
T ss_pred EEEEEcCCCcceeeccCCC-CceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecC
Confidence 9999999987665555554 789999999999999999999999999998 55555554432211 124556899998
Q ss_pred CCEEEEE-cCCC------eEEEEeCCCc
Q 010470 452 ESYVAAG-SADG------SVYIWSISKA 472 (510)
Q Consensus 452 ~~~l~~~-~~dg------~i~iwd~~~~ 472 (510)
+.++++. +.+| .+++|++.+.
T Consensus 252 ~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 252 YVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ceEEEEEccCCCccCCCCceEEEEeccC
Confidence 8887553 3343 3899998764
No 165
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.87 E-value=3.3e-20 Score=175.11 Aligned_cols=257 Identities=13% Similarity=0.166 Sum_probs=188.8
Q ss_pred CCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeC----------CCeEEEEEcCCCCeeEeecCC------
Q 010470 245 QDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS----------SNNLYVWDVNSGRVRHTLTGH------ 308 (510)
Q Consensus 245 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~------ 308 (510)
.|+.|.+||..+++.+..+..+..+ .++|+||++++++++. ++.|.+||..+++.+..+...
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~ 106 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG 106 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence 4789999999999988887766555 8999999999999873 568999999999888777532
Q ss_pred CCceEEEEEecCCCCEEEEEeC--CCcEEEEECCCCeEeee-eeecCceeEEEEcCCC-CEEEEecCCCcEEEEECCC-C
Q 010470 309 TDKVCAVDVSKISSRHVVSAAY--DRTLKVWDLHKGYCVNT-IIFHSNCNALAFSMDG-QTIFSGHIDGNLRLWDIQT-G 383 (510)
Q Consensus 309 ~~~v~~i~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~-~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~-~ 383 (510)
......++++| ++++++++.. ++.|.+||+.+++.+.. +... ....+.+.|++ ..+++.+.||.+.+|+... +
T Consensus 107 g~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g 184 (361)
T 2oiz_A 107 LNYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDG 184 (361)
T ss_dssp CCCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTS
T ss_pred CCCcceEEECC-CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCC
Confidence 34567799999 7888887763 68999999999988877 5443 23335677765 6777888899999999865 5
Q ss_pred ceeee------ecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCcee--eeEeecCC------CeeecCceeEEEc
Q 010470 384 KLLSE------VAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV--CGSLRATG------NRVASNWSRSCIS 449 (510)
Q Consensus 384 ~~~~~------~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~------~~~~~~~~~~~~s 449 (510)
+.... +... .....+.++|++..++..+.++.+.++|+..... ...+.... .........++++
T Consensus 185 ~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~ 262 (361)
T 2oiz_A 185 KVASQSRSKQMFSVK--DDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLH 262 (361)
T ss_dssp SEEEEEECCCCSCTT--TSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEE
T ss_pred cEeeeccccceEcCC--CCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEe
Confidence 54411 1111 1122334467777777778889999999875432 22221111 1111222237899
Q ss_pred CCCCEEEEEcC-----------CCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 450 PDESYVAAGSA-----------DGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 450 ~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
|+++.++++.. .+.|.+||+.+++.+.++..+. +.+++|+|+|++|++++. +.|.+||
T Consensus 263 ~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D 331 (361)
T 2oiz_A 263 RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYD 331 (361)
T ss_dssp TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEE
T ss_pred cCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEE
Confidence 99888777543 3489999999999999998776 899999999999998886 9999996
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.87 E-value=3.2e-20 Score=176.07 Aligned_cols=243 Identities=12% Similarity=0.130 Sum_probs=171.1
Q ss_pred cccceEEEEEecCCCEEEEeeCCCeEEEEeCC-CCcceecccc-cccceeEEEEecCCCE--EEEEe-------------
Q 010470 224 HEGGCASILFEYNSARLISGGQDKSIKLWDTN-TGSLSSTLYG-CLGSVLDLAITHDNRS--VIAAS------------- 286 (510)
Q Consensus 224 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~--l~~~~------------- 286 (510)
+...+..++|+|+|++|++++.+ .|.+|++. +++....... ..+.+.+++|+|+|++ +++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 33468899999999999999888 99999997 7765433221 1133567899999995 44443
Q ss_pred CCCeEEEEEcC-CCCeeEeec----CCCCceEEEEEecCCCCEEEEEe-CCCcEEEEECC-CCeEe--eeeee---cCce
Q 010470 287 SSNNLYVWDVN-SGRVRHTLT----GHTDKVCAVDVSKISSRHVVSAA-YDRTLKVWDLH-KGYCV--NTIIF---HSNC 354 (510)
Q Consensus 287 ~d~~i~iwd~~-~~~~~~~~~----~~~~~v~~i~~~~~~~~~l~s~~-~dg~i~iwd~~-~~~~~--~~~~~---~~~i 354 (510)
.+|.+.+|++. +++....+. .+...+.+++|+| +++++++++ .++.|.+||+. +++.. ..+.. ...+
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p 195 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP 195 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCC
Confidence 68899999997 466544443 2556799999999 777777665 36899999998 67643 23331 3458
Q ss_pred eEEEEcCCCCEEEEec-CCCcEEEEECC--CCceee---eecc---c---ccc------cEEEEE-EcCCCCEEEEEecC
Q 010470 355 NALAFSMDGQTIFSGH-IDGNLRLWDIQ--TGKLLS---EVAA---H---SLA------AVTSIS-LSRSGNIILTSGRD 415 (510)
Q Consensus 355 ~~i~~~~~~~~l~~~~-~dg~i~i~d~~--~~~~~~---~~~~---~---~~~------~i~~i~-~~~~~~~l~~~~~d 415 (510)
..++|+|+|+++++++ .++.|.+|++. +++... .+.. . +.. .+..++ |+|+|++|++++.+
T Consensus 196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~ 275 (365)
T 1jof_A 196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence 9999999999988766 47899999765 455421 2221 1 001 588999 99999998877653
Q ss_pred C------cEEEEEcC-CceeeeE---eecCCCeeecCceeEEEcC---CCCEEEEEcCC-CeEEEEeCCCc
Q 010470 416 N------LHNLFDIR-SLEVCGS---LRATGNRVASNWSRSCISP---DESYVAAGSAD-GSVYIWSISKA 472 (510)
Q Consensus 416 ~------~i~i~d~~-~~~~~~~---~~~~~~~~~~~~~~~~~s~---~~~~l~~~~~d-g~i~iwd~~~~ 472 (510)
. .|.+|++. +++.... ....... ...++|+| ||++|++++.+ +.|.+|++...
T Consensus 276 ~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~----~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG----GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC----TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCeEEEEEECCCCCEEEeeeeeecCCCC----cccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 3 89999996 5554331 2212211 22378999 89999998864 89999998765
No 167
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.87 E-value=1.6e-19 Score=168.48 Aligned_cols=246 Identities=14% Similarity=0.130 Sum_probs=187.8
Q ss_pred cccceEEEEEecCCCEEEEeeCC------------------------CeEEEEeCCCCcceeccc-ccccceeEEEEecC
Q 010470 224 HEGGCASILFEYNSARLISGGQD------------------------KSIKLWDTNTGSLSSTLY-GCLGSVLDLAITHD 278 (510)
Q Consensus 224 h~~~v~~~~~s~~~~~l~s~~~d------------------------g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~ 278 (510)
-.+.|.+++++|+|+++++.+.+ +.|.+||..+++....+. ++...+..++++|+
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 34679999999999999888877 479999999888766554 44567899999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCC-eeEee---------cCCCCceEEEEEecCCCCEEEEEe-CCCcEEEEECCCCeEeee
Q 010470 279 NRSVIAASSSNNLYVWDVNSGR-VRHTL---------TGHTDKVCAVDVSKISSRHVVSAA-YDRTLKVWDLHKGYCVNT 347 (510)
Q Consensus 279 ~~~l~~~~~d~~i~iwd~~~~~-~~~~~---------~~~~~~v~~i~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~ 347 (510)
|+++++...++.|++|+..... .+..+ ..+.....+++++|.++.++++.+ .++.|.+|| .++..+..
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEE
Confidence 9988888889999999976442 45555 244557899999985677777776 689999999 46777666
Q ss_pred eeec-----------CceeEEEEcCC-CCEEEEecCCCcEEEEECCCCceeeeeccc-ccccEEEEEEcC------CCCE
Q 010470 348 IIFH-----------SNCNALAFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEVAAH-SLAAVTSISLSR------SGNI 408 (510)
Q Consensus 348 ~~~~-----------~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~i~~i~~~~------~~~~ 408 (510)
+... ..+..++++|+ +.++++...++.|++||..+++.+..+... ....+.+++|+| +|+.
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~ 260 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKP 260 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCC
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCE
Confidence 6432 22889999998 777778888999999999889888877532 225788999999 3333
Q ss_pred EEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC
Q 010470 409 ILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK 471 (510)
Q Consensus 409 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 471 (510)
.++...++.|.+||..+++.+..+..... .......++++|+|.++++...+++|++|++..
T Consensus 261 ~v~~~~~~~v~~~~~~~g~~~~~~~~~~~-~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 261 YFGDQEPVQGFVMNFSSGEIIDVFKPVRK-HFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CTTCSCCCCEEEEETTTCCEEEEECCSSS-CCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EeccCCCcEEEEEEcCCCeEEEEEcCCCC-ccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 33334456899999999998887742211 122344589999998888889999999999764
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.87 E-value=4.1e-20 Score=189.99 Aligned_cols=287 Identities=11% Similarity=0.018 Sum_probs=199.1
Q ss_pred eeccccccceEEEEEecCCCEEEEe--eCCCeEEEEeCCCCcceeccccccccee---------EEEEe--cCCCE-EEE
Q 010470 219 HKINAHEGGCASILFEYNSARLISG--GQDKSIKLWDTNTGSLSSTLYGCLGSVL---------DLAIT--HDNRS-VIA 284 (510)
Q Consensus 219 ~~~~~h~~~v~~~~~s~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~~ 284 (510)
..+.+|...|..++|++++-++++. +.++...||....+.....+..+...+. ...|+ |||+. |+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 3567899999999999887666766 5588999998654555566666666655 66676 99998 776
Q ss_pred EeC-CCeEEEEEcC--C-CCeeEeecC-----CCCceEEEEEecCCCCEEEEEeCC----------CcEEEEECCC----
Q 010470 285 ASS-SNNLYVWDVN--S-GRVRHTLTG-----HTDKVCAVDVSKISSRHVVSAAYD----------RTLKVWDLHK---- 341 (510)
Q Consensus 285 ~~~-d~~i~iwd~~--~-~~~~~~~~~-----~~~~v~~i~~~~~~~~~l~s~~~d----------g~i~iwd~~~---- 341 (510)
++. +..|++|++. . +. ...+.. |...+.+++|+| +++.|++++.+ ..|++||+.+
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 174 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA 174 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT
T ss_pred EECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccc
Confidence 654 5667777765 2 43 444554 667889999999 88888888766 5899999987
Q ss_pred --CeEeeee-eecCceeEEEEcCCCCEEEEecCC--------CcEEEEECC-CC--ceeeeecccccccEEEEEEcCCCC
Q 010470 342 --GYCVNTI-IFHSNCNALAFSMDGQTIFSGHID--------GNLRLWDIQ-TG--KLLSEVAAHSLAAVTSISLSRSGN 407 (510)
Q Consensus 342 --~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d--------g~i~i~d~~-~~--~~~~~~~~~~~~~i~~i~~~~~~~ 407 (510)
+...... .....+..++|+|||++|+.++.+ ..|++||+. ++ .....+...+...+..+.|+|||+
T Consensus 175 ~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~ 254 (662)
T 3azo_A 175 DRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS 254 (662)
T ss_dssp CGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC
T ss_pred cCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe
Confidence 5544333 334557889999999999877644 379999998 56 133344333237899999999999
Q ss_pred EEEEEecCC--cEEEEEcCCceeeeEeecCCCeee----cCceeEEEcCCCCEEEEEcCCCeEEEE--eCCCcceeeccc
Q 010470 408 IILTSGRDN--LHNLFDIRSLEVCGSLRATGNRVA----SNWSRSCISPDESYVAAGSADGSVYIW--SISKADIVRTLK 479 (510)
Q Consensus 408 ~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~~~l~~~~~dg~i~iw--d~~~~~~~~~~~ 479 (510)
++++++.++ .|.+||+.+++.......+..... .....++|+|++.++++++. +.++|| |+.+++ +..+.
T Consensus 255 l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~ 332 (662)
T 3azo_A 255 LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAA 332 (662)
T ss_dssp EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECC
T ss_pred EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEec
Confidence 888888888 566667666655443332221110 01235889999999999998 999999 555454 56677
Q ss_pred ccCcCEEEE-EEeCCCCcEEEeeCCCeEEEc
Q 010470 480 EHTAPVLSC-SWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 480 ~~~~~v~~~-~~~~~~~~l~s~~~dg~i~iw 509 (510)
.|...+..+ +++++.-.+++++.+....+|
T Consensus 333 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 333 GPWTEWAATLTVSGTRAVGVAASPRTAYEVV 363 (662)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred CCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence 777777777 554443344455555544444
No 169
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.86 E-value=3.1e-20 Score=192.79 Aligned_cols=267 Identities=13% Similarity=0.057 Sum_probs=183.1
Q ss_pred ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccc-----eeEEEEecCCCEEEEEeCC---------CeEE
Q 010470 227 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGS-----VLDLAITHDNRSVIAASSS---------NNLY 292 (510)
Q Consensus 227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---------~~i~ 292 (510)
...++.|+|||.+++++ ||.|++||+.+++....+.+|... ..++.|||||++|++++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 35688999999988886 999999999999877666666532 2448899999999998876 5677
Q ss_pred EEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-C------------------c
Q 010470 293 VWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-S------------------N 353 (510)
Q Consensus 293 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~------------------~ 353 (510)
+||+.+++.. .+..|...+..++|+| +++.|+.+. ++.|++||+.++...+..... . .
T Consensus 96 ~~d~~~~~~~-~l~~~~~~~~~~~~SP-dG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~ 172 (740)
T 4a5s_A 96 IYDLNKRQLI-TEERIPNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA 172 (740)
T ss_dssp EEETTTTEEC-CSSCCCTTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred EEECCCCcEE-EcccCCCcceeeEECC-CCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence 9999988754 4666788899999999 788888875 789999999887754432211 1 1
Q ss_pred eeEEEEcCCCCEEEEecCCC------------------------------------cEEEEECCC---Cc--eeeeecc-
Q 010470 354 CNALAFSMDGQTIFSGHIDG------------------------------------NLRLWDIQT---GK--LLSEVAA- 391 (510)
Q Consensus 354 i~~i~~~~~~~~l~~~~~dg------------------------------------~i~i~d~~~---~~--~~~~~~~- 391 (510)
...+.|+|||+.|+.++.|. .|++||+.+ +. ....+..
T Consensus 173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~ 252 (740)
T 4a5s_A 173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP 252 (740)
T ss_dssp SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence 13589999999998764221 488899988 63 2223332
Q ss_pred ----cccccEEEEEEcCCCCEEEEEec----CCcEEEEEcCCce----ee--eEe--ecCCCeeec-CceeEEEcCCCCE
Q 010470 392 ----HSLAAVTSISLSRSGNIILTSGR----DNLHNLFDIRSLE----VC--GSL--RATGNRVAS-NWSRSCISPDESY 454 (510)
Q Consensus 392 ----~~~~~i~~i~~~~~~~~l~~~~~----d~~i~i~d~~~~~----~~--~~~--~~~~~~~~~-~~~~~~~s~~~~~ 454 (510)
.+...+..+.|+|||+.++.... +..|.+||+.+++ +. ..+ ..+...+.. ....+.|+|||+.
T Consensus 253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~ 332 (740)
T 4a5s_A 253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNS 332 (740)
T ss_dssp HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSE
T ss_pred ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCE
Confidence 12367899999999997665543 2379999998876 21 111 122222210 0123689999998
Q ss_pred EE-EEcC-C--CeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEe
Q 010470 455 VA-AGSA-D--GSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASA 500 (510)
Q Consensus 455 l~-~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 500 (510)
|+ ..+. + ..|++||+.++....... ....|..+.+ +|++.|+..
T Consensus 333 l~~~~s~~~G~~~l~~~~~~~~~~~~lT~-g~~~v~~~~~-~d~~~i~f~ 380 (740)
T 4a5s_A 333 FYKIISNEEGYRHICYFQIDKKDCTFITK-GTWEVIGIEA-LTSDYLYYI 380 (740)
T ss_dssp EEEEEECTTSCEEEEEEETTCSSCEESCC-SSSCEEEEEE-ECSSEEEEE
T ss_pred EEEEEEcCCCceEEEEEECCCCceEeccc-CCEEEEEEEE-EeCCEEEEE
Confidence 76 5543 3 468888988766544333 3445655542 345555443
No 170
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.86 E-value=9e-20 Score=170.81 Aligned_cols=269 Identities=10% Similarity=0.081 Sum_probs=193.9
Q ss_pred cceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee
Q 010470 226 GGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL 305 (510)
Q Consensus 226 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 305 (510)
..|.++.|++++..++..+.++.++.| .+.....+..+...+.+++|+|++++++++..++.|.+||..+++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 457788899988888877888999999 34555566667777899999999997778888999999999888766555
Q ss_pred cCCCCceEEEEEecCCCCEEEEEeCC----CcEEEEECCCCeEeeeee---ecCceeEEEEcCCCCEEEEecC------C
Q 010470 306 TGHTDKVCAVDVSKISSRHVVSAAYD----RTLKVWDLHKGYCVNTII---FHSNCNALAFSMDGQTIFSGHI------D 372 (510)
Q Consensus 306 ~~~~~~v~~i~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~------d 372 (510)
..+...+.+++++| +++++++...+ +.|.+||..++.....+. ....+.+++++|+|+++++... .
T Consensus 83 ~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~ 161 (333)
T 2dg1_A 83 VSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPL 161 (333)
T ss_dssp ECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCC
T ss_pred eCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCC
Confidence 45677899999998 67777776655 689999998776543332 2235889999999988776653 3
Q ss_pred CcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEE-EecCCcEEEEEcCC-ceeeeEee-----cCCCeeecCcee
Q 010470 373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILT-SGRDNLHNLFDIRS-LEVCGSLR-----ATGNRVASNWSR 445 (510)
Q Consensus 373 g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~-~~~d~~i~i~d~~~-~~~~~~~~-----~~~~~~~~~~~~ 445 (510)
+.|..||..+++...... .. ..+..++|+|+|+.+++ .+.++.|.+||+.+ +.....+. .... ......
T Consensus 162 ~~l~~~~~~~~~~~~~~~-~~-~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~--~~~~~~ 237 (333)
T 2dg1_A 162 GGVYYVSPDFRTVTPIIQ-NI-SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG--HEGPDS 237 (333)
T ss_dssp EEEEEECTTSCCEEEEEE-EE-SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS--SSEEEE
T ss_pred ceEEEEeCCCCEEEEeec-CC-CcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC--CCCCCc
Confidence 567777776555433222 22 46889999999986654 45678999999963 33221110 0010 012344
Q ss_pred EEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCc------CEEEEEEeCCCCcEEEeeCC
Q 010470 446 SCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTA------PVLSCSWSGLGKPLASADKN 503 (510)
Q Consensus 446 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~s~~~d 503 (510)
++++++|+++++...++.|.+||. +++.+..+..+.. .+.+++|+|++..|+.++.+
T Consensus 238 i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 238 CCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred eEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 899999998888877889999997 5666655544332 68899999998777665554
No 171
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.85 E-value=2e-18 Score=157.87 Aligned_cols=244 Identities=12% Similarity=0.215 Sum_probs=182.7
Q ss_pred cccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc------ccccceeEEEEe-cCCCEEEEEeC-CCeEEE
Q 010470 222 NAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY------GCLGSVLDLAIT-HDNRSVIAASS-SNNLYV 293 (510)
Q Consensus 222 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~~-~~~~~l~~~~~-d~~i~i 293 (510)
.+|...+.+++++++|.++++.+.++.|.+||.. +.....+. ++...+.+++++ +++.++++... ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 4567789999999999988888889999999987 55544443 244578899995 66665555533 789999
Q ss_pred EEcCCCCeeEeec-CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec---CceeEEEEcCCCCEEEEe
Q 010470 294 WDVNSGRVRHTLT-GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH---SNCNALAFSMDGQTIFSG 369 (510)
Q Consensus 294 wd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~i~~~~~~~~l~~~ 369 (510)
|| .+++.+..+. .+...+.++++.| +++++++...++.|.+||.. +..+..+... ..+.+++++|+|+++++.
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 181 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence 99 6677776664 3446789999998 67777777778999999964 5555555432 358999999999988888
Q ss_pred cCCCcEEEEECCCCceeeeecccc-cccEEEEEEcCCCCEEEEEecCC-cEEEEEcCCceeeeEeecCCCeeecCceeEE
Q 010470 370 HIDGNLRLWDIQTGKLLSEVAAHS-LAAVTSISLSRSGNIILTSGRDN-LHNLFDIRSLEVCGSLRATGNRVASNWSRSC 447 (510)
Q Consensus 370 ~~dg~i~i~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (510)
..++.|++||. .++.+..+.... ...+.+++++|+|+++++...++ .|.+||. +++.+..+..+... .....++
T Consensus 182 ~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~--~~~~~i~ 257 (286)
T 1q7f_A 182 NRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKH--AQCFDVA 257 (286)
T ss_dssp GGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCC--SCEEEEE
T ss_pred CCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCC--CcceeEE
Confidence 88899999997 566666664431 25789999999999888888776 9999996 45555555543221 1233589
Q ss_pred EcCCCCEEEEEcCCCeEEEEeCCCcce
Q 010470 448 ISPDESYVAAGSADGSVYIWSISKADI 474 (510)
Q Consensus 448 ~s~~~~~l~~~~~dg~i~iwd~~~~~~ 474 (510)
++|+|+++++ +.+++|++|++....+
T Consensus 258 ~~~~g~l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 258 LMDDGSVVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp EETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred ECCCCcEEEE-CCCCeEEEEEcccccc
Confidence 9999987777 5689999999865443
No 172
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.85 E-value=2e-18 Score=157.91 Aligned_cols=239 Identities=13% Similarity=0.221 Sum_probs=178.7
Q ss_pred cccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeec------CCCCceEEEEEecCCCCEEEEEeC-CCcEEE
Q 010470 264 YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLT------GHTDKVCAVDVSKISSRHVVSAAY-DRTLKV 336 (510)
Q Consensus 264 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------~~~~~v~~i~~~~~~~~~l~s~~~-dg~i~i 336 (510)
.++...+.++++++++.++++...++.|.+||.. ++....+. ++...+.++++.+.++.++++... ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 3455678999999999988888889999999976 66666553 244578899995435666665543 789999
Q ss_pred EECCCCeEeeeeeec--CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecc-cccccEEEEEEcCCCCEEEEEe
Q 010470 337 WDLHKGYCVNTIIFH--SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAA-HSLAAVTSISLSRSGNIILTSG 413 (510)
Q Consensus 337 wd~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~ 413 (510)
|| .++..+..+... ..+.+++++|+|+++++...++.|.+||. .++.+..+.. .....+.+++++|+|+++++..
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 182 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN 182 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence 99 567766666432 35899999999998888888899999996 5666655542 2225689999999999888888
Q ss_pred cCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCC-eEEEEeCCCcceeecccccC--cCEEEEEE
Q 010470 414 RDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADG-SVYIWSISKADIVRTLKEHT--APVLSCSW 490 (510)
Q Consensus 414 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~--~~v~~~~~ 490 (510)
.++.|.+||.. +..+..+..... ......++++++|+++++...++ .|.+|+. +++.+..+..+. ..+.++++
T Consensus 183 ~~~~i~~~~~~-g~~~~~~~~~g~--~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~ 258 (286)
T 1q7f_A 183 RAHCVKVFNYE-GQYLRQIGGEGI--TNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVAL 258 (286)
T ss_dssp GGTEEEEEETT-CCEEEEESCTTT--SCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEE
T ss_pred CCCEEEEEcCC-CCEEEEEccCCc--cCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEE
Confidence 89999999974 444455543321 12234589999999998888776 9999995 566666665443 34789999
Q ss_pred eCCCCcEEEeeCCCeEEEcC
Q 010470 491 SGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 491 ~~~~~~l~s~~~dg~i~iwd 510 (510)
+|+|+++++ +.|+.|++|+
T Consensus 259 ~~~g~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 259 MDDGSVVLA-SKDYRLYIYR 277 (286)
T ss_dssp ETTTEEEEE-ETTTEEEEEE
T ss_pred CCCCcEEEE-CCCCeEEEEE
Confidence 999987666 6799999995
No 173
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.85 E-value=6.9e-19 Score=164.20 Aligned_cols=240 Identities=13% Similarity=0.128 Sum_probs=183.9
Q ss_pred ccceeEEEEecCCCEEEEEeCC------------------------CeEEEEEcCCCCeeEeec-CCCCceEEEEEecCC
Q 010470 267 LGSVLDLAITHDNRSVIAASSS------------------------NNLYVWDVNSGRVRHTLT-GHTDKVCAVDVSKIS 321 (510)
Q Consensus 267 ~~~v~~~~~~~~~~~l~~~~~d------------------------~~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~ 321 (510)
-+.+.+++++|+|+++++...+ +.|.+||..+++....+. ++...+.+++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 4678999999999988887777 479999998898876664 4456789999998 7
Q ss_pred CCEEEEEeCCCcEEEEECCCCe-Eeeeeee----------cCceeEEEEcC-CCCEEEEec-CCCcEEEEECCCCceeee
Q 010470 322 SRHVVSAAYDRTLKVWDLHKGY-CVNTIIF----------HSNCNALAFSM-DGQTIFSGH-IDGNLRLWDIQTGKLLSE 388 (510)
Q Consensus 322 ~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~----------~~~i~~i~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~~~~ 388 (510)
++++++...++.|++||..... .+..+.. ...+..++++| +|.++++.+ .++.|++|| .++..+..
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEE
Confidence 7788888889999999986442 4444421 12488999999 888888886 689999999 57777776
Q ss_pred ecccc---------cccEEEEEEcCC-CCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcC------CC
Q 010470 389 VAAHS---------LAAVTSISLSRS-GNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP------DE 452 (510)
Q Consensus 389 ~~~~~---------~~~i~~i~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~------~~ 452 (510)
+.... ...+..++++|+ +.++++...++.|++||..+++.+..+...... .....++++| +|
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~--~~~~~~~~~pg~~~~~~g 258 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFG--RNVFAISYIPGFLFAVNG 258 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTT--TCEEEEEEETTEEEEEEC
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccC--CCcceeeecCCEEEEeCC
Confidence 65322 134899999998 777777788899999999988887777533211 1223477788 34
Q ss_pred CEEEEEcCCCeEEEEeCCCcceeeccc---ccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 453 SYVAAGSADGSVYIWSISKADIVRTLK---EHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 453 ~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+..++...++.|++|++.+++.+..+. .+...+.+++++|+|.++++...++.|++|+
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred CEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence 333334445689999999999888873 5677799999999998888888899999985
No 174
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.84 E-value=1.3e-17 Score=165.22 Aligned_cols=286 Identities=14% Similarity=0.136 Sum_probs=205.6
Q ss_pred ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCC--CCcceecccccccceeEEEEe----cCCCEEEEEe-CCC
Q 010470 217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTN--TGSLSSTLYGCLGSVLDLAIT----HDNRSVIAAS-SSN 289 (510)
Q Consensus 217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~-~d~ 289 (510)
...++... ..+.++.|||||+++++++.|+.|.+||+. +++.+..+.... ....++|+ |||+++++++ .++
T Consensus 189 v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~ 266 (567)
T 1qks_A 189 IKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPP 266 (567)
T ss_dssp EEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETT
T ss_pred EEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCC
Confidence 34444332 246789999999999999999999999995 777777776533 45789999 6999988887 458
Q ss_pred eEEEEEcCCCCeeEeecC----------CCC-ceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE--eeeeeecCceeE
Q 010470 290 NLYVWDVNSGRVRHTLTG----------HTD-KVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC--VNTIIFHSNCNA 356 (510)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~----------~~~-~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~i~~ 356 (510)
.|.++|..+.+.+..+.. |.. .+..+..++....++++...+|.|.++|..+... +..+.......+
T Consensus 267 ~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d 346 (567)
T 1qks_A 267 QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHD 346 (567)
T ss_dssp EEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEE
T ss_pred eEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccC
Confidence 999999999998877652 112 5778888885566677777789999999976543 233333445778
Q ss_pred EEEcCCCCEEEEec-CCCcEEEEECCCCceeeeecc-c---ccc-cEEEEEEcCCCCEEE-EEe-cCCcEEEEEcCC---
Q 010470 357 LAFSMDGQTIFSGH-IDGNLRLWDIQTGKLLSEVAA-H---SLA-AVTSISLSRSGNIIL-TSG-RDNLHNLFDIRS--- 425 (510)
Q Consensus 357 i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-~---~~~-~i~~i~~~~~~~~l~-~~~-~d~~i~i~d~~~--- 425 (510)
+.|+|+|++++++. .++.|.++|+.+++.+..+.. . +.+ .+. + ++|++..++ ++. .++.|.++|..+
T Consensus 347 ~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~ 424 (567)
T 1qks_A 347 GGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-F-VHPTFGPVWATSHMGDDSVALIGTDPEGH 424 (567)
T ss_dssp EEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-E-EETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred ceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-e-ECCCCCcEEEeCCCCCCeEEEecCCCCCC
Confidence 99999999887654 678999999999988776654 2 111 222 2 578755444 443 468999999987
Q ss_pred ----ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC-------CCeEEEEeCCCc-----ce-eeccc--------c
Q 010470 426 ----LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA-------DGSVYIWSISKA-----DI-VRTLK--------E 480 (510)
Q Consensus 426 ----~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-------dg~i~iwd~~~~-----~~-~~~~~--------~ 480 (510)
.+.+..+........ .+.++|+++++++... .++|.|||+.+. .. +..+. .
T Consensus 425 ~~~~~kvv~~i~~~g~g~~----~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~ 500 (567)
T 1qks_A 425 PDNAWKILDSFPALGGGSL----FIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITE 500 (567)
T ss_dssp TTTBTSEEEEEECSCSCCC----CEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCS
T ss_pred ccccCEEEEEEecCCCCCE----EEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCC
Confidence 677777776543211 1678999999998763 358999999877 21 12221 1
Q ss_pred cCcCEEEEEEeCCCCcEEEee-----CCCeEEEcC
Q 010470 481 HTAPVLSCSWSGLGKPLASAD-----KNGVVCVWT 510 (510)
Q Consensus 481 ~~~~v~~~~~~~~~~~l~s~~-----~dg~i~iwd 510 (510)
....+..+.|+|+|+.+..+. .++.|.|+|
T Consensus 501 ~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 501 GQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred CCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 234688999999999776653 368888875
No 175
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.84 E-value=3.7e-18 Score=159.03 Aligned_cols=255 Identities=10% Similarity=0.099 Sum_probs=189.2
Q ss_pred CCCeEEEEeCCCCcceeccc------ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEe
Q 010470 245 QDKSIKLWDTNTGSLSSTLY------GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVS 318 (510)
Q Consensus 245 ~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~ 318 (510)
.++.|.+||..+++....+. .......++.+. +++.+++...++.|.+||..+++.+..+. .......++++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~ 92 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL 92 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence 48899999999988765542 122345677774 44555555567899999999999988885 34678899998
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC------ceeEEEEcCCCCEEEEec-CCCcEEEEECCCCceeeeecc
Q 010470 319 KISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS------NCNALAFSMDGQTIFSGH-IDGNLRLWDIQTGKLLSEVAA 391 (510)
Q Consensus 319 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~ 391 (510)
+ ++..+++...++.|.+||+.+++....+.... .+..+++ .++..+++.. .++.|.+||+.+++....+..
T Consensus 93 ~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~ 170 (328)
T 3dsm_A 93 S-DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTI 170 (328)
T ss_dssp E-TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC
T ss_pred C-CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc
Confidence 8 56555554479999999999999888887666 6778888 3444444443 488999999999998887765
Q ss_pred cccccEEEEEEcCCCCEEEEEecC----------CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC
Q 010470 392 HSLAAVTSISLSRSGNIILTSGRD----------NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD 461 (510)
Q Consensus 392 ~~~~~i~~i~~~~~~~~l~~~~~d----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 461 (510)
. ..+..+.++|+|++++++..+ +.|.+||..+++....+...... ....++++|++++|+++..
T Consensus 171 g--~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~---~p~~la~~~d~~~lyv~~~- 244 (328)
T 3dsm_A 171 G--IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGD---WPSEVQLNGTRDTLYWINN- 244 (328)
T ss_dssp S--SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTC---CCEEEEECTTSCEEEEESS-
T ss_pred C--CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCC---CceeEEEecCCCEEEEEcc-
Confidence 4 456789999999987777655 78999999998887766543221 2344899999999888765
Q ss_pred CeEEEEeCCCcceeec--ccccCcCEEEEEEeCC-CCcEEEe----eCCCeEEEcC
Q 010470 462 GSVYIWSISKADIVRT--LKEHTAPVLSCSWSGL-GKPLASA----DKNGVVCVWT 510 (510)
Q Consensus 462 g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~s~----~~dg~i~iwd 510 (510)
.|.+||..+++.... +..+...+.+++++|+ +..+++. ..++.|.+||
T Consensus 245 -~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 245 -DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp -SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred -EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 899999988876422 2222457899999995 4455555 5688999986
No 176
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.83 E-value=1e-16 Score=147.35 Aligned_cols=276 Identities=9% Similarity=0.025 Sum_probs=195.5
Q ss_pred ccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCccee-cccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 010470 221 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSS-TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG 299 (510)
Q Consensus 221 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 299 (510)
+..+...+.+++++++|.++++...++.|.+||.. +.... ....+...+.+++++++|.++++...++.|..|+.. +
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 34456789999999999988877778899999988 55432 222345678999999999988877778899999976 4
Q ss_pred Cee-EeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee--cCceeEEEEcCCCCEEEEecCCCcEE
Q 010470 300 RVR-HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF--HSNCNALAFSMDGQTIFSGHIDGNLR 376 (510)
Q Consensus 300 ~~~-~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~dg~i~ 376 (510)
+.. ..+......+.++.+.+ ++.++++...++.|.+||. ++........ ...+.+++++++|..+++...++.|.
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 165 (299)
T 2z2n_A 88 IIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG 165 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred cEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence 432 22223456788999988 6777777777889999998 5554332221 24588999999998888777788999
Q ss_pred EEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEE
Q 010470 377 LWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVA 456 (510)
Q Consensus 377 i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 456 (510)
.||. +++............+.+++++++|.++++...++.|.+||. ++.... +.... ....+..++++++|++++
T Consensus 166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~--~~~~~~~i~~~~~g~l~v 240 (299)
T 2z2n_A 166 RITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPT--PNARPHAITAGAGIDLWF 240 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSS--TTCCEEEEEECSTTCEEE
T ss_pred EEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCC--CCCCceeEEECCCCCEEE
Confidence 9998 666544322222256889999999998777777889999999 655432 22111 112344588999999777
Q ss_pred EEcCCCeEEEEeCCCcceee-cccccCcCEEEEEEeCCCCcEEEeeCCCeEE
Q 010470 457 AGSADGSVYIWSISKADIVR-TLKEHTAPVLSCSWSGLGKPLASADKNGVVC 507 (510)
Q Consensus 457 ~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 507 (510)
+...++.|.+||. ++.... .+..+...+.++++ ++|.+.++.+.++.++
T Consensus 241 ~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~ 290 (299)
T 2z2n_A 241 TEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGK 290 (299)
T ss_dssp EETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEE
T ss_pred eccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEE
Confidence 7767889999998 454322 13345567899999 8887666655444333
No 177
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.83 E-value=1.3e-17 Score=153.30 Aligned_cols=245 Identities=10% Similarity=0.044 Sum_probs=179.8
Q ss_pred ceeeccccccceEEEEEecCCC-EEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEE
Q 010470 217 CKHKINAHEGGCASILFEYNSA-RLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD 295 (510)
Q Consensus 217 ~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 295 (510)
....+..+.....+++|+|+|+ +++++..++.|..|+..++ ...+..+...+.+++++|+|+++++...++.|.+||
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQR 96 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence 3445556667789999999998 7888888999999999877 556666778899999999999877777778999999
Q ss_pred cCCCCeeEeecCC----CCceEEEEEecCCCCEEEE----Ee-------------CCCcEEEEECCCCeEeeeeeecCce
Q 010470 296 VNSGRVRHTLTGH----TDKVCAVDVSKISSRHVVS----AA-------------YDRTLKVWDLHKGYCVNTIIFHSNC 354 (510)
Q Consensus 296 ~~~~~~~~~~~~~----~~~v~~i~~~~~~~~~l~s----~~-------------~dg~i~iwd~~~~~~~~~~~~~~~i 354 (510)
..+++........ ...+.++++.| +++++++ |+ ..+.|..++.. +...........+
T Consensus 97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~ 174 (296)
T 3e5z_A 97 EPGGEWESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKP 174 (296)
T ss_dssp STTCCEEEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSE
T ss_pred CCCCcEEEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCC
Confidence 9888755443221 23466799998 7787776 32 13467777765 5443333334557
Q ss_pred eEEEEcCCCCEEEEecCCCcEEEEECC-CCce---eeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeee
Q 010470 355 NALAFSMDGQTIFSGHIDGNLRLWDIQ-TGKL---LSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCG 430 (510)
Q Consensus 355 ~~i~~~~~~~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 430 (510)
+.++|+|+|+.+++.+.++.|.+||+. ++.. ...+ ......+.+++++++|+++++. ++.|.+||.. ++...
T Consensus 175 ~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~ 250 (296)
T 3e5z_A 175 NGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELG 250 (296)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEE
T ss_pred ccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEE
Confidence 899999999998888888999999986 4544 2333 2233567789999999876666 7899999986 66666
Q ss_pred EeecCCCeeecCceeEEE-cCCCCEEEEEcCCCeEEEEeCCCccee
Q 010470 431 SLRATGNRVASNWSRSCI-SPDESYVAAGSADGSVYIWSISKADIV 475 (510)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~ 475 (510)
.+..+.. . ..++| +|+++.|++++.++ +.-++..+..+.
T Consensus 251 ~~~~~~~-~----~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~~ 290 (296)
T 3e5z_A 251 RVLTPQT-T----SNLCFGGPEGRTLYMTVSTE-FWSIETNVRGLE 290 (296)
T ss_dssp EEECSSC-C----CEEEEESTTSCEEEEEETTE-EEEEECSCCBCC
T ss_pred EEECCCC-c----eeEEEECCCCCEEEEEcCCe-EEEEEccccccc
Confidence 6665544 2 33778 68999999888764 666676665543
No 178
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.83 E-value=4.7e-18 Score=160.06 Aligned_cols=252 Identities=12% Similarity=0.162 Sum_probs=173.0
Q ss_pred ceEEEEEecCCCEEEEee---------CCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCC---C--eEE
Q 010470 227 GCASILFEYNSARLISGG---------QDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS---N--NLY 292 (510)
Q Consensus 227 ~v~~~~~s~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~--~i~ 292 (510)
.+....+ ||++++... .++.|.+||+.+++... + ..+..+.|+|||++|+.++.+ + .|+
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~ 88 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIW 88 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence 4666777 888876642 26789999999876533 3 567889999999999887753 3 488
Q ss_pred EEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeC---------------------------CCcEEEEECCCCeEe
Q 010470 293 VWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY---------------------------DRTLKVWDLHKGYCV 345 (510)
Q Consensus 293 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~---------------------------dg~i~iwd~~~~~~~ 345 (510)
+|++.+++.......+ . +..+.|+| +++.|+.++. ...|.+||+.++..+
T Consensus 89 ~~~~~~g~~~~l~~~~-~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 89 VADLETLSSKKILEAK-N-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEETTTTEEEEEEEES-E-EEEEEECT-TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEECCCCceEEEEcCC-C-ccceeECC-CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 8888887765554433 3 99999999 7777776653 257999999988874
Q ss_pred eeeeecCceeEEEEcCCCCEEEEecCCC---------cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC-
Q 010470 346 NTIIFHSNCNALAFSMDGQTIFSGHIDG---------NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD- 415 (510)
Q Consensus 346 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d- 415 (510)
..+... .+..+.|+|+| +++++..++ .|+++| +++. ..+..+ ..+..+ +|+|++|+.++.+
T Consensus 166 ~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~--~~~~~~--spdg~~l~~~~~~~ 236 (347)
T 2gop_A 166 EEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKE-EKMFEK--VSFYAV--DSDGERILLYGKPE 236 (347)
T ss_dssp EEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEE-EEEEEE--ESEEEE--EECSSCEEEEECCS
T ss_pred eeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCce-EEeccC--cceeeE--CCCCCEEEEEEccc
Confidence 444444 78899999999 777765432 355555 5443 333332 344444 9999988877644
Q ss_pred -------CcEEEEEcCCceeeeEeecCCCeeecCcee-EEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEE
Q 010470 416 -------NLHNLFDIRSLEVCGSLRATGNRVASNWSR-SCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS 487 (510)
Q Consensus 416 -------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 487 (510)
..|.+|| +++.......+... +.. +.|+ +| ++++++.++.+++| +.+++.... ..+...|.+
T Consensus 237 ~~~~~~~~~l~~~d--~~~~~~l~~~~~~~----~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~-~~~~~~v~~ 306 (347)
T 2gop_A 237 KKYMSEHNKLYIYD--GKEVMGILDEVDRG----VGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPI-AKGRHWIMG 306 (347)
T ss_dssp SSCCCSSCEEEEEC--SSCEEESSTTCCSE----EEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEE-ECSSSEEEE
T ss_pred cCCccccceEEEEC--CCceEeccccCCcc----cCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEE-ecCCCeEEe
Confidence 3677888 44443332222222 232 6788 88 88899999999999 886655433 335778999
Q ss_pred EEEeCCCCcEEEeeCCCeE-EEc
Q 010470 488 CSWSGLGKPLASADKNGVV-CVW 509 (510)
Q Consensus 488 ~~~~~~~~~l~s~~~dg~i-~iw 509 (510)
++|+| .++++++.++.. .+|
T Consensus 307 ~~~s~--~~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 307 FDVDE--IVVYLKETATRLRELF 327 (347)
T ss_dssp EEESS--SEEEEEECSSSCCEEE
T ss_pred eeeeC--cEEEEEcCCCChHHhe
Confidence 99999 566777666543 444
No 179
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.82 E-value=2.2e-17 Score=151.68 Aligned_cols=234 Identities=11% Similarity=0.070 Sum_probs=172.7
Q ss_pred ecccccccceeEEEEecCCC-EEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 010470 261 STLYGCLGSVLDLAITHDNR-SVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDL 339 (510)
Q Consensus 261 ~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~ 339 (510)
..+..+.....+++|+|+++ +++++..++.|..|+..++ ...+..+...+.+++++| ++.++++...++.|.+||.
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~ 97 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQRE 97 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEECS
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEcC
Confidence 33444556678999999998 6777778899999998877 566666778899999999 7777777766789999999
Q ss_pred CCCeEeeeeeec-----CceeEEEEcCCCCEEEE----ec-------------CCCcEEEEECCCCceeeeecccccccE
Q 010470 340 HKGYCVNTIIFH-----SNCNALAFSMDGQTIFS----GH-------------IDGNLRLWDIQTGKLLSEVAAHSLAAV 397 (510)
Q Consensus 340 ~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~----~~-------------~dg~i~i~d~~~~~~~~~~~~~~~~~i 397 (510)
.++......... ..++.++++|+|+++++ |+ ..+.|..|+.. ++.. .+.... ..+
T Consensus 98 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~~-~~~ 174 (296)
T 3e5z_A 98 PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-APIRDR-VKP 174 (296)
T ss_dssp TTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEECCC-SSE
T ss_pred CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-EeecCC-CCC
Confidence 888754433221 24678999999998887 33 13567777765 4433 333332 678
Q ss_pred EEEEEcCCCCEEEEEecCCcEEEEEcC-Ccee---eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc
Q 010470 398 TSISLSRSGNIILTSGRDNLHNLFDIR-SLEV---CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD 473 (510)
Q Consensus 398 ~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 473 (510)
..++|+|+|+.+++.+.++.|.+|++. ++.. ...+... ......++++++|+++++. ++.|.+|+.. ++
T Consensus 175 ~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~----~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~ 247 (296)
T 3e5z_A 175 NGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVE----PGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GD 247 (296)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCS----SSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SC
T ss_pred ccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCC----CCCCCeEEECCCCCEEEEc--CCeEEEECCC-CC
Confidence 899999999998777788999999987 4443 2233111 1223348999999977666 7889999976 77
Q ss_pred eeecccccCcCEEEEEE-eCCCCcEEEeeCCCeEEE
Q 010470 474 IVRTLKEHTAPVLSCSW-SGLGKPLASADKNGVVCV 508 (510)
Q Consensus 474 ~~~~~~~~~~~v~~~~~-~~~~~~l~s~~~dg~i~i 508 (510)
.+..+..+.. +++++| +|+++.|++++.+|..++
T Consensus 248 ~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 248 ELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSI 282 (296)
T ss_dssp EEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred EEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence 7777777776 899999 589988988888765543
No 180
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.82 E-value=7.3e-19 Score=168.33 Aligned_cols=254 Identities=12% Similarity=0.046 Sum_probs=176.2
Q ss_pred EEeCCCCcceecccccccceeE-----EEEecCCCEEEEEeC-CC--eEEEEEcCCCCeeEeecCCCCceEEEEEecCCC
Q 010470 251 LWDTNTGSLSSTLYGCLGSVLD-----LAITHDNRSVIAASS-SN--NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISS 322 (510)
Q Consensus 251 iwd~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~ 322 (510)
.+|..++..+..+..|...... .+|+|||++|+.++. ++ .|.+||+.+++......++...+..+.|+| ++
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~sp-dg 92 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSP-DD 92 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECT-TS
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcC-CC
Confidence 4566777777777777665555 889999999999887 66 488899998888777777766666778999 88
Q ss_pred CEEEEEeCCCcEEEEECCCCeEeeeeeecCc-eeE--EEEcCCCCEEEEe----------------------cCCCcEEE
Q 010470 323 RHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNA--LAFSMDGQTIFSG----------------------HIDGNLRL 377 (510)
Q Consensus 323 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-i~~--i~~~~~~~~l~~~----------------------~~dg~i~i 377 (510)
..|+.++.++.|++||+.+++.......+.. +.. ..++|++..++.. ..++.|++
T Consensus 93 ~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 172 (388)
T 3pe7_A 93 DALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR 172 (388)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence 8999999899999999999987766655544 222 3458999988742 24468999
Q ss_pred EECCCCceeeeecccccccEEEEEEcC-CCCEEEEEecC------CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcC
Q 010470 378 WDIQTGKLLSEVAAHSLAAVTSISLSR-SGNIILTSGRD------NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP 450 (510)
Q Consensus 378 ~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 450 (510)
||+.+++...... +. ..+..+.|+| +|+.|+....+ ..|.++|+..+............ .+..+.|+|
T Consensus 173 ~d~~~g~~~~l~~-~~-~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~---~~~~~~~sp 247 (388)
T 3pe7_A 173 VDLKTGESTVILQ-EN-QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGE---SCTHEFWVP 247 (388)
T ss_dssp EETTTCCEEEEEE-ES-SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTE---EEEEEEECT
T ss_pred EECCCCceEEeec-CC-ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCc---ccccceECC
Confidence 9999887544433 33 6789999999 99988877653 37888887765443322222111 123478999
Q ss_pred CCCEEEEEcC-C----CeEEEEeCCCccee--ecccccCcC---EEEEEEeCCCCcEEEe---------eCCCeEEEcC
Q 010470 451 DESYVAAGSA-D----GSVYIWSISKADIV--RTLKEHTAP---VLSCSWSGLGKPLASA---------DKNGVVCVWT 510 (510)
Q Consensus 451 ~~~~l~~~~~-d----g~i~iwd~~~~~~~--~~~~~~~~~---v~~~~~~~~~~~l~s~---------~~dg~i~iwd 510 (510)
||+.|+..+. + +.|++||+.+++.. ..+.++... ...++|+|||+.|+.. +.+..|++||
T Consensus 248 dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d 326 (388)
T 3pe7_A 248 DGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFN 326 (388)
T ss_dssp TSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEE
T ss_pred CCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEe
Confidence 9997765443 2 24999999988743 233321110 1123799999988754 4566788885
No 181
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.82 E-value=1.6e-17 Score=154.61 Aligned_cols=254 Identities=10% Similarity=0.029 Sum_probs=187.7
Q ss_pred ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCCCCeeEee
Q 010470 227 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRVRHTL 305 (510)
Q Consensus 227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~ 305 (510)
....+.++ ++..+++...++.|.+||..+++.+.++. .......+++++++. ++++. .++.|.+||..+++....+
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i 121 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYI 121 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEE
Confidence 45777775 34555666668999999999999888774 356788999999985 55555 8899999999999887776
Q ss_pred cCCC-----CceEEEEEecCCCCEEEEEe-CCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCC-------
Q 010470 306 TGHT-----DKVCAVDVSKISSRHVVSAA-YDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHID------- 372 (510)
Q Consensus 306 ~~~~-----~~v~~i~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------- 372 (510)
.... .....+++ . ++.++++.. .++.|.+||+.+++.+..+.....+..+.++|+|++++++..+
T Consensus 122 ~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~ 199 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYG 199 (328)
T ss_dssp ECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSC
T ss_pred EcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccc
Confidence 5333 14556666 3 455555544 4899999999999998888877778899999999977776654
Q ss_pred ---CcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEc
Q 010470 373 ---GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCIS 449 (510)
Q Consensus 373 ---g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s 449 (510)
+.|.+||..+++....+.......+..++|+|+++.++++.. .|.+||..+++.......... ......++++
T Consensus 200 ~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~--~~~p~gi~vd 275 (328)
T 3dsm_A 200 YEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFR--DTKYYGLTVN 275 (328)
T ss_dssp BCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCC--SSCEEEEEEC
T ss_pred cCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCC--CCceEEEEEc
Confidence 789999999998877776543247899999999999988765 899999988765321111110 1233458999
Q ss_pred C-CCCEEEEE----cCCCeEEEEeCCCcceeecccccCcCEEEEEEe
Q 010470 450 P-DESYVAAG----SADGSVYIWSISKADIVRTLKEHTAPVLSCSWS 491 (510)
Q Consensus 450 ~-~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 491 (510)
| ++.++++. ..++.|.+||.. ++.+..+... .....++|-
T Consensus 276 p~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G-~~P~~~~~~ 320 (328)
T 3dsm_A 276 PNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVG-IIPGAFCWK 320 (328)
T ss_dssp TTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEE-ESEEEEEEE
T ss_pred CCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEec-cCcceEEEe
Confidence 9 56666666 578999999988 8888887642 334666663
No 182
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.82 E-value=1.6e-17 Score=150.07 Aligned_cols=245 Identities=12% Similarity=0.099 Sum_probs=191.2
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCcceecccccc-cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCC-CceE
Q 010470 236 NSARLISGGQDKSIKLWDTNTGSLSSTLYGCL-GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHT-DKVC 313 (510)
Q Consensus 236 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~ 313 (510)
.+++|++++.|+.|.+||..+|+.+..+..+. ..+.++.++|+|++++ +.++.|..||. +++.+..+..+. ..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 46789999999999999999999998888765 4789999999999888 45778999998 899999988653 5788
Q ss_pred EEEEecCCCCEEEEEeC-CCcEEEEECCCCeEeeeeeec-------CceeEEEEcCCCCEEEEecCCCcEEEEECCCCce
Q 010470 314 AVDVSKISSRHVVSAAY-DRTLKVWDLHKGYCVNTIIFH-------SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL 385 (510)
Q Consensus 314 ~i~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~-------~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 385 (510)
++.+.+ +++++++.+. ++.|..+|. +|+.+..+... ..+..+.+.++|+++++...++.|..||.. |+.
T Consensus 81 ~~~~~~-dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~ 157 (276)
T 3no2_A 81 TARILP-DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL 157 (276)
T ss_dssp EEEECT-TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred ccEECC-CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence 889988 8888888877 788888886 68777776532 235567889999999999999999999987 999
Q ss_pred eeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCe--eecCceeEEEcCCCCEEEEEcCC--
Q 010470 386 LSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNR--VASNWSRSCISPDESYVAAGSAD-- 461 (510)
Q Consensus 386 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~l~~~~~d-- 461 (510)
+..+... ..+.++.+.++|+++++++.++.|..+|..+++.+..+...... .......+...++|.++++.+..
T Consensus 158 ~w~~~~~--~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~ 235 (276)
T 3no2_A 158 LNSVKLS--GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHD 235 (276)
T ss_dssp EEEEECS--SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTC
T ss_pred EEEEECC--CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCcc
Confidence 9888765 45667888999999999999999999999999998888643211 11224457788999998887421
Q ss_pred ------CeEEEEeC-CCcceeeccccc--CcCEEEE
Q 010470 462 ------GSVYIWSI-SKADIVRTLKEH--TAPVLSC 488 (510)
Q Consensus 462 ------g~i~iwd~-~~~~~~~~~~~~--~~~v~~~ 488 (510)
+..+++.+ .+++.+..+..+ -+.+.++
T Consensus 236 ~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~ 271 (276)
T 3no2_A 236 REAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTI 271 (276)
T ss_dssp TTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEE
T ss_pred ccccccCCceEEEECCCCCEEEEecCcccccceeee
Confidence 23455555 467777776543 2344444
No 183
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=6.6e-19 Score=182.86 Aligned_cols=237 Identities=11% Similarity=0.094 Sum_probs=164.3
Q ss_pred ceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCc-----eEEEEEecCCCCEEEEEeCC---------CcE
Q 010470 269 SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDK-----VCAVDVSKISSRHVVSAAYD---------RTL 334 (510)
Q Consensus 269 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----v~~i~~~~~~~~~l~s~~~d---------g~i 334 (510)
...++.|+|||.+++++ |+.|++||+.+++....+.+|... ...+.|+| +++.|+.++.+ +.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECC-CCCEEEEEECCeeeEEEccceEE
Confidence 45689999999888886 899999999999988878777643 23478899 88888888765 667
Q ss_pred EEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccE-----------------
Q 010470 335 KVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAV----------------- 397 (510)
Q Consensus 335 ~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i----------------- 397 (510)
.+||+.+++..........+...+|+|||+.|+.+. ++.|++||+.++.............+
T Consensus 95 ~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~ 173 (740)
T 4a5s_A 95 DIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY 173 (740)
T ss_dssp EEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred EEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence 899999998765444456689999999999998885 68999999988775443222211112
Q ss_pred EEEEEcCCCCEEEEEecCC------------------------------------cEEEEEcCC---ce--eeeEeecCC
Q 010470 398 TSISLSRSGNIILTSGRDN------------------------------------LHNLFDIRS---LE--VCGSLRATG 436 (510)
Q Consensus 398 ~~i~~~~~~~~l~~~~~d~------------------------------------~i~i~d~~~---~~--~~~~~~~~~ 436 (510)
.++.|||||+.|+..+.|. .|++||+.+ +. ....+....
T Consensus 174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~ 253 (740)
T 4a5s_A 174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA 253 (740)
T ss_dssp BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCH
T ss_pred cceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCc
Confidence 3589999999998875332 467788877 52 112222100
Q ss_pred C--eeecCceeEEEcCCCCEEEEEcC----CCeEEEEeCCCcc----ee--ecc--cccCcCEE-----EEEEeCCCCcE
Q 010470 437 N--RVASNWSRSCISPDESYVAAGSA----DGSVYIWSISKAD----IV--RTL--KEHTAPVL-----SCSWSGLGKPL 497 (510)
Q Consensus 437 ~--~~~~~~~~~~~s~~~~~l~~~~~----dg~i~iwd~~~~~----~~--~~~--~~~~~~v~-----~~~~~~~~~~l 497 (510)
. .....+..++|+|||+.++.... +..|++||+.+++ +. ..+ ..|...|. .++|+|||+.|
T Consensus 254 ~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l 333 (740)
T 4a5s_A 254 SMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSF 333 (740)
T ss_dssp HHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEE
T ss_pred cCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEE
Confidence 0 01122445899999997665532 3479999999887 22 222 33554444 78999999977
Q ss_pred E-Eee-CCCe--EEEc
Q 010470 498 A-SAD-KNGV--VCVW 509 (510)
Q Consensus 498 ~-s~~-~dg~--i~iw 509 (510)
+ ..+ .+|. |++|
T Consensus 334 ~~~~s~~~G~~~l~~~ 349 (740)
T 4a5s_A 334 YKIISNEEGYRHICYF 349 (740)
T ss_dssp EEEEECTTSCEEEEEE
T ss_pred EEEEEcCCCceEEEEE
Confidence 6 554 4554 5544
No 184
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.81 E-value=7.5e-17 Score=159.73 Aligned_cols=273 Identities=12% Similarity=0.051 Sum_probs=199.1
Q ss_pred ecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcC--CCCeeEeecCCCCc
Q 010470 234 EYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVN--SGRVRHTLTGHTDK 311 (510)
Q Consensus 234 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~ 311 (510)
++.+.++++...++.|.++|..+++.+.++.. ...+..+.|+|||+++++++.++.|.+||+. +++.+..+... ..
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~ 241 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SE 241 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SE
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CC
Confidence 34455677788899999999999998887764 3356789999999999999999999999995 78888777753 34
Q ss_pred eEEEEEe----cCCCCEEEEEe-CCCcEEEEECCCCeEeeeeeec------------CceeEEEEcCCCCEEE-EecCCC
Q 010470 312 VCAVDVS----KISSRHVVSAA-YDRTLKVWDLHKGYCVNTIIFH------------SNCNALAFSMDGQTIF-SGHIDG 373 (510)
Q Consensus 312 v~~i~~~----~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~------------~~i~~i~~~~~~~~l~-~~~~dg 373 (510)
...++|+ | +++++++++ .+++|.++|..+.+.+..+... ..+..+..++++..++ ....+|
T Consensus 242 P~~ia~s~~~~p-DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g 320 (567)
T 1qks_A 242 ARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG 320 (567)
T ss_dssp EEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred CceeEEccccCC-CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCC
Confidence 6789999 5 666665554 5699999999999888877532 1467788888766544 556779
Q ss_pred cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEe-cCCcEEEEEcCCceeeeEeec-CCCeeecCceeEEEcCC
Q 010470 374 NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDIRSLEVCGSLRA-TGNRVASNWSRSCISPD 451 (510)
Q Consensus 374 ~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~ 451 (510)
.|.++|....+.+............++.|+|+|+++++++ .++.|.++|+.+++....+.. ...+...... ..++|+
T Consensus 321 ~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~-~~~~p~ 399 (567)
T 1qks_A 321 KILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGA-NFVHPT 399 (567)
T ss_dssp EEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCE-EEEETT
T ss_pred eEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccce-eeECCC
Confidence 9999998776543332222225678899999999887765 578999999999998877765 3333321111 125887
Q ss_pred CCEE-EEEc-CCCeEEEEeCCC-------cceeecccccCcCEEEEEEeCCCCcEEEeeC-------CCeEEEcC
Q 010470 452 ESYV-AAGS-ADGSVYIWSISK-------ADIVRTLKEHTAPVLSCSWSGLGKPLASADK-------NGVVCVWT 510 (510)
Q Consensus 452 ~~~l-~~~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-------dg~i~iwd 510 (510)
+..+ +++. .++.|.++|..+ .+.+.++......-..+..+|++++|.+... .+.|.+||
T Consensus 400 ~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 400 FGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred CCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence 5544 4443 468999999987 5667777654434355788999998887653 34777765
No 185
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.81 E-value=1.4e-16 Score=149.05 Aligned_cols=252 Identities=10% Similarity=0.044 Sum_probs=177.9
Q ss_pred ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCC----CeEE
Q 010470 217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS----NNLY 292 (510)
Q Consensus 217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~ 292 (510)
....+.++...+.+++|+++|++++++..++.|.+||..+++.......+...+.+++|+|+|+++++...+ +.|.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~ 115 (333)
T 2dg1_A 36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF 115 (333)
T ss_dssp EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEE
Confidence 445566677788999999999988888889999999998887654443566789999999999987777666 6899
Q ss_pred EEEcCCCCeeEeec--CCCCceEEEEEecCCCCEEEEEeC------CCcEEEEECCCCeEeeeeeecCceeEEEEcCCCC
Q 010470 293 VWDVNSGRVRHTLT--GHTDKVCAVDVSKISSRHVVSAAY------DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQ 364 (510)
Q Consensus 293 iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~ 364 (510)
+||..++.....+. .+...+.++.++| ++.++++... .+.|..||..++...........+..++|+|+|+
T Consensus 116 ~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~ 194 (333)
T 2dg1_A 116 AATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEK 194 (333)
T ss_dssp EECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSS
T ss_pred EEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCC
Confidence 99988777553333 2456789999999 6777666553 3667777776655444333334588999999998
Q ss_pred EEE-EecCCCcEEEEECCC-Cceeeee------cccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCC
Q 010470 365 TIF-SGHIDGNLRLWDIQT-GKLLSEV------AAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATG 436 (510)
Q Consensus 365 ~l~-~~~~dg~i~i~d~~~-~~~~~~~------~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 436 (510)
.++ +.+.++.|.+||+.+ +.....+ .......+..++++++|+++++...++.|.+||. +++.+..+..+.
T Consensus 195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~ 273 (333)
T 2dg1_A 195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPG 273 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTT
T ss_pred EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCC
Confidence 665 455678999999864 3332211 1111146888999999998888888899999998 455555554332
Q ss_pred Ce--eecCceeEEEcCCCCEEEEEcCCC------eEEEEeCC
Q 010470 437 NR--VASNWSRSCISPDESYVAAGSADG------SVYIWSIS 470 (510)
Q Consensus 437 ~~--~~~~~~~~~~s~~~~~l~~~~~dg------~i~iwd~~ 470 (510)
.. .......++|+|++..|++++.++ .|+.+++.
T Consensus 274 ~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 274 RDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp GGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred CccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 20 001234588999987777666553 45555544
No 186
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.80 E-value=5.6e-17 Score=146.83 Aligned_cols=241 Identities=9% Similarity=-0.004 Sum_probs=171.0
Q ss_pred ceEEEEEecCCCEEE-EeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee
Q 010470 227 GCASILFEYNSARLI-SGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL 305 (510)
Q Consensus 227 ~v~~~~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 305 (510)
...+++++++|++++ +.+.++.|.+|+..++........+...+.+++++++|+++++.. ++.|.+||..........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 678999999999777 557789999999876554332233445778999999999655555 889999997765433222
Q ss_pred cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee-cCceeEEEEcCCCCEEEEecCCCcEEEEECCCCc
Q 010470 306 TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF-HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK 384 (510)
Q Consensus 306 ~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~ 384 (510)
......+.++++.+ ++.++++...++.|.+|+..+......... ...+.+++++++|+++++...++.|.+||.....
T Consensus 104 ~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~ 182 (270)
T 1rwi_B 104 FDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN 182 (270)
T ss_dssp CCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred cCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc
Confidence 22336788999998 677777777788999998765443322222 2357899999999977777778899999987665
Q ss_pred eeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeE
Q 010470 385 LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSV 464 (510)
Q Consensus 385 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i 464 (510)
......... ..+.+++++++|.++++...++.|.+||............. ......++++++|+++++...++.|
T Consensus 183 ~~~~~~~~~-~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~----~~~p~~i~~~~~g~l~v~~~~~~~v 257 (270)
T 1rwi_B 183 QVVLPFTDI-TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTG----LNTPLAVAVDSDRTVYVADRGNDRV 257 (270)
T ss_dssp EEECCCSSC-CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCS----CSCEEEEEECTTCCEEEEEGGGTEE
T ss_pred eEeecccCC-CCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCC----CCCceeEEECCCCCEEEEECCCCEE
Confidence 443322222 67899999999988887778889999998765432211111 1223458999999988898999999
Q ss_pred EEEeCCCcce
Q 010470 465 YIWSISKADI 474 (510)
Q Consensus 465 ~iwd~~~~~~ 474 (510)
++|++...+.
T Consensus 258 ~~~~~~~~~~ 267 (270)
T 1rwi_B 258 VKLTSLEHHH 267 (270)
T ss_dssp EEECCCGGGS
T ss_pred EEEcCCCccc
Confidence 9999876554
No 187
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.79 E-value=1.2e-17 Score=171.68 Aligned_cols=246 Identities=15% Similarity=0.057 Sum_probs=167.2
Q ss_pred eeeccccccceE---------EEEEe--cCCCE-EEEeeC-CCeEEEEeCC--C-Ccceecccc-----cccceeEEEEe
Q 010470 218 KHKINAHEGGCA---------SILFE--YNSAR-LISGGQ-DKSIKLWDTN--T-GSLSSTLYG-----CLGSVLDLAIT 276 (510)
Q Consensus 218 ~~~~~~h~~~v~---------~~~~s--~~~~~-l~s~~~-dg~i~iwd~~--~-~~~~~~~~~-----~~~~v~~~~~~ 276 (510)
...+..|...+. ...|+ |||+. |+.++. +..|.+|++. + +. ...+.. |...+.+++|+
T Consensus 60 ~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~s 138 (662)
T 3azo_A 60 EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLL 138 (662)
T ss_dssp EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEE
T ss_pred cceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEEC
Confidence 445555655555 55565 99998 766554 5667777776 3 43 344444 66788999999
Q ss_pred cCCCEEEEEeCC----------CeEEEEEcCC------CCeeEeec-CCCCceEEEEEecCCCCEEEEEeCC--------
Q 010470 277 HDNRSVIAASSS----------NNLYVWDVNS------GRVRHTLT-GHTDKVCAVDVSKISSRHVVSAAYD-------- 331 (510)
Q Consensus 277 ~~~~~l~~~~~d----------~~i~iwd~~~------~~~~~~~~-~~~~~v~~i~~~~~~~~~l~s~~~d-------- 331 (510)
|||+.|++++.+ ..|++||+.+ +.. ..+. .+...+..+.|+| +++.|+.++.+
T Consensus 139 pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~ 216 (662)
T 3azo_A 139 PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEG 216 (662)
T ss_dssp TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTC
T ss_pred CCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECC-CCCEEEEEECCCCCCCCCC
Confidence 999999998876 5899999987 544 4455 5667888899999 88888877654
Q ss_pred CcEEEEECC-CC---eEeeeeee-cCceeEEEEcCCCCEEEEecCCC--cEEEEECCCCceeeeeccccccc--------
Q 010470 332 RTLKVWDLH-KG---YCVNTIIF-HSNCNALAFSMDGQTIFSGHIDG--NLRLWDIQTGKLLSEVAAHSLAA-------- 396 (510)
Q Consensus 332 g~i~iwd~~-~~---~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~-------- 396 (510)
..|.+||+. ++ ........ ...+..+.|+|||+++++++.+| .|++||+.+++.......+. ..
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~-~~~~p~w~~~ 295 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREE-EFAGPLWTPG 295 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSS-BSSCCCCSTT
T ss_pred cEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccc-cccCcccccc
Confidence 479999998 56 44444444 35688999999999888888888 67777776666543333221 11
Q ss_pred EEEEEEcCCCCEEEEEecCCcEEEE--EcCCceeeeEeecCCCeeecCceeEEEcCCCCE--EEEEcCCC--eEEEEeCC
Q 010470 397 VTSISLSRSGNIILTSGRDNLHNLF--DIRSLEVCGSLRATGNRVASNWSRSCISPDESY--VAAGSADG--SVYIWSIS 470 (510)
Q Consensus 397 i~~i~~~~~~~~l~~~~~d~~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~--l~~~~~dg--~i~iwd~~ 470 (510)
+.+++|+|++.++++++. +.++|| |+.++. ...+..+...+. .+ +++++.. +++++.+. .|++||+.
T Consensus 296 ~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~----~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~ 368 (662)
T 3azo_A 296 MRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWA----AT-LTVSGTRAVGVAASPRTAYEVVELDTV 368 (662)
T ss_dssp CCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEE----EE-EEEETTEEEEEEEETTEEEEEEEEETT
T ss_pred CceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEE----EE-EecCCCEEEEEEcCCCCCCEEEEEECC
Confidence 567899999999999988 998998 555555 445544433332 23 1444443 44445454 46666766
Q ss_pred Ccce
Q 010470 471 KADI 474 (510)
Q Consensus 471 ~~~~ 474 (510)
+++.
T Consensus 369 ~g~~ 372 (662)
T 3azo_A 369 TGRA 372 (662)
T ss_dssp TCCE
T ss_pred CCce
Confidence 6654
No 188
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.79 E-value=2e-15 Score=138.69 Aligned_cols=275 Identities=10% Similarity=0.009 Sum_probs=193.8
Q ss_pred ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCccee-cccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe
Q 010470 223 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSS-TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV 301 (510)
Q Consensus 223 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 301 (510)
.....+.+++++++|.++++...++.|.+||.. ++... .+......+.++++++++.++++...++.|..||.. ++.
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 345678999999999988887778999999988 55433 222334678999999999977777778899999987 654
Q ss_pred eE-eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee-e-ecCceeEEEEcCCCCEEEEecCCCcEEEE
Q 010470 302 RH-TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI-I-FHSNCNALAFSMDGQTIFSGHIDGNLRLW 378 (510)
Q Consensus 302 ~~-~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~-~~~~i~~i~~~~~~~~l~~~~~dg~i~i~ 378 (510)
.. .+......+.++++.+ ++.++++...++.|..||.. +...... . ....+.++++.++|+.+++...++.|..|
T Consensus 95 ~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 172 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRI 172 (300)
T ss_dssp EEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred EEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEE
Confidence 32 2222446788999988 67777777668899999987 5544221 1 12458899999999977777777899999
Q ss_pred ECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEE
Q 010470 379 DIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAG 458 (510)
Q Consensus 379 d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 458 (510)
|. +++............+.+++++++|.++++....+.|.+||. ++...... ... .......++++++|+++++.
T Consensus 173 ~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~-~~~--~~~~~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 173 TN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYD-IPT--PNARPHAITAGKNSEIWFTE 247 (300)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE-CSS--TTCCEEEEEECSTTCEEEEE
T ss_pred CC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEE-CCC--CCCCceEEEECCCCCEEEec
Confidence 98 665443222222257899999999988777777788999998 44433321 111 11223458899999977777
Q ss_pred cCCCeEEEEeCCCccee-ecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 459 SADGSVYIWSISKADIV-RTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 459 ~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
..++.|..|+. ++... ..+......+.+++++++|.+.++.. + .|..+
T Consensus 248 ~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 248 WGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL 296 (300)
T ss_dssp TTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred cCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence 77789999998 44432 22333445688999999998666554 4 55544
No 189
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.79 E-value=6.2e-17 Score=146.18 Aligned_cols=212 Identities=12% Similarity=0.103 Sum_probs=173.5
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCeeEeecCCC-CceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec--Cce
Q 010470 278 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHT-DKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH--SNC 354 (510)
Q Consensus 278 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~i 354 (510)
.+++|++++.++.|++||..+|+.+..+..+. ..+.++.+.| ++++++ +.++.|..||. +++.+..+..+ ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 46788999999999999998999999998766 4788999999 788777 34788999999 89999888875 357
Q ss_pred eEEEEcCCCCEEEEecC-CCcEEEEECCCCceeeeecccc-----cccEEEEEEcCCCCEEEEEecCCcEEEEEcCCcee
Q 010470 355 NALAFSMDGQTIFSGHI-DGNLRLWDIQTGKLLSEVAAHS-----LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV 428 (510)
Q Consensus 355 ~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~-----~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 428 (510)
.++.+.|+|+++++.+. ++.|..+|. +|+.+..+.... ...+..+.+.++|+++++...++.|..||.. ++.
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~ 157 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL 157 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence 88999999999999877 788888885 788777665321 1345567889999999999999999999998 888
Q ss_pred eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccC------cCEEEEEEeCCCCcEEEe
Q 010470 429 CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHT------APVLSCSWSGLGKPLASA 500 (510)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~s~ 500 (510)
+..+.....+. .+.+.++|+++++++.+++|..||..+|+.+..+..+. ..+.+++..++|..+++.
T Consensus 158 ~w~~~~~~~~~-----~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 158 LNSVKLSGTPF-----SSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp EEEEECSSCCC-----EEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred EEEEECCCCcc-----ceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 88887653332 26778999999999989999999999999988875432 237888999999887776
No 190
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.78 E-value=8.3e-17 Score=145.70 Aligned_cols=234 Identities=9% Similarity=-0.043 Sum_probs=166.2
Q ss_pred ceeEEEEecCCCEEE-EEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeee
Q 010470 269 SVLDLAITHDNRSVI-AASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT 347 (510)
Q Consensus 269 ~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 347 (510)
...+++++++|++++ +.+.++.|.+|+..++........+...+.++++.+ ++.++++.. ++.|.+||....... .
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~-~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQT-V 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCE-E
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEe-e
Confidence 678899999999666 446788999999765543322233445678899988 666666655 889999998765432 2
Q ss_pred ee-ec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC
Q 010470 348 II-FH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS 425 (510)
Q Consensus 348 ~~-~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~ 425 (510)
+. .. ..+.+++++|+|+.+++...++.|.+|+..+.......... ...+.+++++|+|+++++...++.|.+||...
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG-LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 180 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCS-CCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecccc-CCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence 22 22 45889999999998888777889999986555433222222 24678899999999877777788999999887
Q ss_pred ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCe
Q 010470 426 LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGV 505 (510)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~ 505 (510)
........... .....++++++|.++++...++.|.+|+............+...+.+++++|+|+++++...++.
T Consensus 181 ~~~~~~~~~~~----~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~ 256 (270)
T 1rwi_B 181 NNQVVLPFTDI----TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDR 256 (270)
T ss_dssp CCEEECCCSSC----CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTE
T ss_pred CceEeecccCC----CCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCE
Confidence 65433222111 23345899999988888888889999998765443332234457899999999998888888999
Q ss_pred EEEcC
Q 010470 506 VCVWT 510 (510)
Q Consensus 506 i~iwd 510 (510)
|.+|+
T Consensus 257 v~~~~ 261 (270)
T 1rwi_B 257 VVKLT 261 (270)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99885
No 191
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.78 E-value=1.6e-17 Score=171.13 Aligned_cols=243 Identities=10% Similarity=0.027 Sum_probs=165.7
Q ss_pred ccccceEEEEEecCCCEEE-----EeeCCCeEEEEeCCCCcceecccccccce--eEEEEecCCCEEEEEeCCCe-----
Q 010470 223 AHEGGCASILFEYNSARLI-----SGGQDKSIKLWDTNTGSLSSTLYGCLGSV--LDLAITHDNRSVIAASSSNN----- 290 (510)
Q Consensus 223 ~h~~~v~~~~~s~~~~~l~-----s~~~dg~i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~d~~----- 290 (510)
+|...+.+++|||||++|| .|+.+..|++||+.+++.+.. .+...+ ..++|+|||+.|+.++.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV--DVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS--CCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC--cccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 5666799999999999998 444557899999999886511 122222 68999999999999998766
Q ss_pred --------EEEEEcCCCC----eeEeecCCCCceEEEEEecCCCCEEEEEeCCC----cEEEEECCCCeEeeeeeecCce
Q 010470 291 --------LYVWDVNSGR----VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR----TLKVWDLHKGYCVNTIIFHSNC 354 (510)
Q Consensus 291 --------i~iwd~~~~~----~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~i 354 (510)
|++|++.++. .+.....+...+.++.|+| ++++|+.++.++ .|.+||..++............
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 274 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAK 274 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCC
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCce
Confidence 9999998876 3333344566789999999 677777666555 7788877666544433333445
Q ss_pred eEEEEcCCCCEEEEec---CCCcEEEEECCCCce--eeeecccc-cccEEEEEEcCCCCEEEEEecCCcEEEEEcC-Cce
Q 010470 355 NALAFSMDGQTIFSGH---IDGNLRLWDIQTGKL--LSEVAAHS-LAAVTSISLSRSGNIILTSGRDNLHNLFDIR-SLE 427 (510)
Q Consensus 355 ~~i~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~ 427 (510)
....+ ++|.+++.+. .++.|.+||+.++.. ...+..+. ...+.++.|+ ++.++++...|+..++|.+. ++.
T Consensus 275 ~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~ 352 (695)
T 2bkl_A 275 YEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGK 352 (695)
T ss_dssp EEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred EEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence 55555 5666444443 357899999987653 23333332 3568888888 67788888889988777654 344
Q ss_pred eeeEeecC-CCeeecCceeEEEcCCCCEEEEE----cCCCeEEEEeCCCcce
Q 010470 428 VCGSLRAT-GNRVASNWSRSCISPDESYVAAG----SADGSVYIWSISKADI 474 (510)
Q Consensus 428 ~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~~ 474 (510)
....+..+ ...+ ..++++|++..++.. ...++|++||+.+++.
T Consensus 353 ~~~~l~~~~~~~v----~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 353 PVRTVQLPGVGAA----SNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEECCCSSSSEE----CCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred eeEEecCCCCeEE----EEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 44444333 2222 235678998877633 2357899999987753
No 192
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.78 E-value=1e-16 Score=165.63 Aligned_cols=245 Identities=12% Similarity=0.069 Sum_probs=172.4
Q ss_pred ccccceEEEEEecCCCEEEEeeCCC-----eEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCe-------
Q 010470 223 AHEGGCASILFEYNSARLISGGQDK-----SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNN------- 290 (510)
Q Consensus 223 ~h~~~v~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~------- 290 (510)
+|...+.+++|||||++|+.++.++ .|++||+.+++....... ...+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-CcccceEEEEeCCCEEEEEEECCcccccccc
Confidence 4555789999999999998776543 899999999987653222 223678999999999999987765
Q ss_pred ---------EEEEEcCCCCe----eEeecCCCCceEEEEEecCCCCEEEEEeC-----CCcEEEEECCC------Ce-Ee
Q 010470 291 ---------LYVWDVNSGRV----RHTLTGHTDKVCAVDVSKISSRHVVSAAY-----DRTLKVWDLHK------GY-CV 345 (510)
Q Consensus 291 ---------i~iwd~~~~~~----~~~~~~~~~~v~~i~~~~~~~~~l~s~~~-----dg~i~iwd~~~------~~-~~ 345 (510)
|++|++.++.. +.....|...+..+.|+| ++++|+.++. +..|.+||+.+ +. ..
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 279 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW 279 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence 99999988762 222233556688999999 7777776654 56899999976 42 34
Q ss_pred eeeeecCceeEEEEcCCCCEEEEecC----CCcEEEEECCCCce--eeeeccccc-ccEEEEEEcCCCCEEEEEecCCc-
Q 010470 346 NTIIFHSNCNALAFSMDGQTIFSGHI----DGNLRLWDIQTGKL--LSEVAAHSL-AAVTSISLSRSGNIILTSGRDNL- 417 (510)
Q Consensus 346 ~~~~~~~~i~~i~~~~~~~~l~~~~~----dg~i~i~d~~~~~~--~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~d~~- 417 (510)
..+..+.......|+|+|..|+..+. ++.|.+||+.++.. ...+..+.. ..+.++.|++++.++++...++.
T Consensus 280 ~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~ 359 (710)
T 2xdw_A 280 VKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN 359 (710)
T ss_dssp EEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred EEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEE
Confidence 44444433223358889988776554 33699999987642 344444432 36888999988888888888874
Q ss_pred -EEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEc----CCCeEEEEeCCCcc
Q 010470 418 -HNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGS----ADGSVYIWSISKAD 473 (510)
Q Consensus 418 -i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~ 473 (510)
|.+|++.+++....+..+... +..++++|++..++... ..+.|+.||+.+++
T Consensus 360 ~l~~~~~~~g~~~~~l~~~~~~----v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 360 TLQLHDLATGALLKIFPLEVGS----VVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEETTTCCEEEEECCCSSE----EEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEECCCCCEEEecCCCCce----EEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 666787677766666554333 23477889987666432 34789999998876
No 193
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.77 E-value=2e-15 Score=142.38 Aligned_cols=268 Identities=10% Similarity=0.015 Sum_probs=188.0
Q ss_pred EecCCCEEEEeeC--CC---eEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe----------CCCeEEEEEcC
Q 010470 233 FEYNSARLISGGQ--DK---SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS----------SSNNLYVWDVN 297 (510)
Q Consensus 233 ~s~~~~~l~s~~~--dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~iwd~~ 297 (510)
..|+++++++... .+ .|.+||..+++.+..+.....+ .++++|||++++++. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 3467777666653 22 8899999999988877654444 999999999999886 36789999999
Q ss_pred CCCeeEeecCC-------CCceEEEEEecCCCCEEEEEeC--CCcEEEEECCCCeEeee-eeecCceeEEEEcCCC-CEE
Q 010470 298 SGRVRHTLTGH-------TDKVCAVDVSKISSRHVVSAAY--DRTLKVWDLHKGYCVNT-IIFHSNCNALAFSMDG-QTI 366 (510)
Q Consensus 298 ~~~~~~~~~~~-------~~~v~~i~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~-~~~~~~i~~i~~~~~~-~~l 366 (510)
+.+.+..+... ......+.|+| ++++++++.. ++.|.++| .+++.+.. +..... +.+.|++ ..+
T Consensus 106 t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~ 180 (373)
T 2mad_H 106 TFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTF 180 (373)
T ss_pred CCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceE
Confidence 98887766432 12345789999 7888887764 57899999 99988877 654432 4455655 455
Q ss_pred EEecCCCcEEEEECCCCceeeeec-----cccccc-EEEEEEcCCCCEEEEEecCCcEEEEEcCCce--eeeEeecCC--
Q 010470 367 FSGHIDGNLRLWDIQTGKLLSEVA-----AHSLAA-VTSISLSRSGNIILTSGRDNLHNLFDIRSLE--VCGSLRATG-- 436 (510)
Q Consensus 367 ~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~-i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~-- 436 (510)
++.+.||.+.++|. +++...... ... .+ .....+.+++..++..+..+.+.++|+.+.. ....+....
T Consensus 181 ~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~ 258 (373)
T 2mad_H 181 YLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAA-QNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGG 258 (373)
T ss_pred EEEcCCCCEEEEEC-CCcEEEEEeccccccCC-cceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCc
Confidence 66778999999999 887663322 111 22 2234566766655555578899999997542 222222111
Q ss_pred ----CeeecCceeEEEcCCCCEEEEEcC----------CCeEEEEeCCCcceeecccccCcCEEEEEEeCCCC-cEEEee
Q 010470 437 ----NRVASNWSRSCISPDESYVAAGSA----------DGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGK-PLASAD 501 (510)
Q Consensus 437 ----~~~~~~~~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~ 501 (510)
......+..+.++|+++.+++... ++.|.++|+.+++.+..+.. .....+++|+|||+ .++++.
T Consensus 259 ~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~ 337 (373)
T 2mad_H 259 RKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALS 337 (373)
T ss_pred ccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEc
Confidence 011112233778999998887653 35799999999999888864 33578999999999 777776
Q ss_pred -CCCeEEEcC
Q 010470 502 -KNGVVCVWT 510 (510)
Q Consensus 502 -~dg~i~iwd 510 (510)
.++.|.+||
T Consensus 338 ~~~~~V~ViD 347 (373)
T 2mad_H 338 AGTEVLHIYD 347 (373)
T ss_pred CCCCeEEEEE
Confidence 589999986
No 194
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.77 E-value=1.1e-17 Score=160.47 Aligned_cols=243 Identities=14% Similarity=0.020 Sum_probs=162.7
Q ss_pred EEEeCCCCcceeccccccc-----ceeEEEEecCCCEEEEEeCC---CeEEEEEcCCCCeeEeecCCCCceEEEEEecCC
Q 010470 250 KLWDTNTGSLSSTLYGCLG-----SVLDLAITHDNRSVIAASSS---NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKIS 321 (510)
Q Consensus 250 ~iwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 321 (510)
..+|..++..+..+..+.. .+.+++|+|||++|+.+... ..|.+||+.+++......++......+.|+| +
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~sp-d 91 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIST-D 91 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECT-T
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECC-C
Confidence 3446677766666554433 37788999999998877643 4788999988776544433333233478999 8
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEeeeeeecCc-eeE-------------------EEEcCCCCEEEEe-----cCCCcEE
Q 010470 322 SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNA-------------------LAFSMDGQTIFSG-----HIDGNLR 376 (510)
Q Consensus 322 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-i~~-------------------i~~~~~~~~l~~~-----~~dg~i~ 376 (510)
++.|+.++.++.|++||+.++........+.. ... +.++|+++.++.+ ..++.|+
T Consensus 92 g~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~ 171 (396)
T 3c5m_A 92 ERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLI 171 (396)
T ss_dssp SSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEE
T ss_pred CCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEE
Confidence 88998888889999999998876655543332 111 3467777776654 3566899
Q ss_pred EEECCCCceeeeecccccccEEEEEEcC-CCCEEEEEecC------CcEEEEEcCCceeeeEeecCCCeeecCceeEEEc
Q 010470 377 LWDIQTGKLLSEVAAHSLAAVTSISLSR-SGNIILTSGRD------NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCIS 449 (510)
Q Consensus 377 i~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s 449 (510)
+||+.+++...... +. ..+..+.|+| ++..|+..+.+ ..|.+||+.++....... +.. ...+..+.|+
T Consensus 172 ~~d~~~g~~~~~~~-~~-~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~--~~~~~~~~~s 246 (396)
T 3c5m_A 172 KVDIETGELEVIHQ-DT-AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE-HAE--GESCTHEFWI 246 (396)
T ss_dssp EEETTTCCEEEEEE-ES-SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC-CCT--TEEEEEEEEC
T ss_pred EEECCCCcEEeecc-CC-cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec-cCC--CccccceEEC
Confidence 99998887655443 22 6789999999 78877665543 368888987654332222 110 1123347899
Q ss_pred CCCCEEEEEcCC-----CeEEEEeCCCcceeecccccCcCEEEEEEeC-CCCcEEEee
Q 010470 450 PDESYVAAGSAD-----GSVYIWSISKADIVRTLKEHTAPVLSCSWSG-LGKPLASAD 501 (510)
Q Consensus 450 ~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~ 501 (510)
|+|++|+.++.+ +.|++||+.+++........ ... +.|+| +|+++++++
T Consensus 247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~ 301 (396)
T 3c5m_A 247 PDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP--PCS-HLMSNFDGSLMVGDG 301 (396)
T ss_dssp TTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC--SEE-EEEECSSSSEEEEEE
T ss_pred CCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC--CCC-CCccCCCCceEEEec
Confidence 999987776543 45999999887654322211 233 89999 999888754
No 195
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.77 E-value=2e-16 Score=163.58 Aligned_cols=239 Identities=11% Similarity=0.066 Sum_probs=166.4
Q ss_pred cccceeEEEEecCCCEEEEEeCCC-----eEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCc-------
Q 010470 266 CLGSVLDLAITHDNRSVIAASSSN-----NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRT------- 333 (510)
Q Consensus 266 ~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~------- 333 (510)
|...+..++|||||++|+.++.++ .|++||+.+++.......+ ..+.+++|+| +++.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTH-DGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECT-TSSEEEEEECCCCSSCCSSS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEe-CCCEEEEEEECCcccccccc
Confidence 445688999999999998876543 8999999999876533222 2367799999 7888888877765
Q ss_pred ---------EEEEECCCCeEe--eeeeec---CceeEEEEcCCCCEEEEecC-----CCcEEEEECCC------Cc-eee
Q 010470 334 ---------LKVWDLHKGYCV--NTIIFH---SNCNALAFSMDGQTIFSGHI-----DGNLRLWDIQT------GK-LLS 387 (510)
Q Consensus 334 ---------i~iwd~~~~~~~--~~~~~~---~~i~~i~~~~~~~~l~~~~~-----dg~i~i~d~~~------~~-~~~ 387 (510)
|++|++.++... ..+... ..+..+.|+|||++|+.++. +..|++||+.+ +. ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 999999877632 222221 23678999999999887654 56899999976 43 344
Q ss_pred eecccccccEEEEEEcCCCCEEEEEecC----CcEEEEEcCCcee--eeEeecCCCeeecCceeEEEcCCCCEEEEEcCC
Q 010470 388 EVAAHSLAAVTSISLSRSGNIILTSGRD----NLHNLFDIRSLEV--CGSLRATGNRVASNWSRSCISPDESYVAAGSAD 461 (510)
Q Consensus 388 ~~~~~~~~~i~~i~~~~~~~~l~~~~~d----~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 461 (510)
.+..+. ..+.. .|+|+|..|+..+.. +.|.+||+.++.. ...+..+... ..+..++|++++.++++...+
T Consensus 281 ~l~~~~-~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~lv~~~~~~ 356 (710)
T 2xdw_A 281 KLIDNF-EGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEK--DVLEWVACVRSNFLVLCYLHD 356 (710)
T ss_dssp EEECSS-SSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS--CEEEEEEEETTTEEEEEEEET
T ss_pred EeeCCC-CcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCC--CeEEEEEEEcCCEEEEEEEEC
Confidence 555443 33433 488999987776653 3699999987642 2333333221 112336788888888888888
Q ss_pred Ce--EEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEe-e---CCCeEEEcC
Q 010470 462 GS--VYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASA-D---KNGVVCVWT 510 (510)
Q Consensus 462 g~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~---~dg~i~iwd 510 (510)
+. |++|++.+++.+..+..+.+.+.+++++|++..++.. + ..+.|+.||
T Consensus 357 g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411 (710)
T ss_dssp TEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred CEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 84 6677876787777777777888999999998766532 2 346777775
No 196
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.75 E-value=5.4e-16 Score=143.98 Aligned_cols=271 Identities=11% Similarity=0.073 Sum_probs=189.8
Q ss_pred EecCCCEEEEeeC-----CCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe----------CCCeEEEEEcC
Q 010470 233 FEYNSARLISGGQ-----DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS----------SSNNLYVWDVN 297 (510)
Q Consensus 233 ~s~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~iwd~~ 297 (510)
..|+++.+++... ++.|.++|..+++.+.++.....+ .++++|||+++++++ .++.|.+||..
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 3578888777755 679999999999999888765555 499999999998876 36789999999
Q ss_pred CCCeeEeecCCC-------CceEEEEEecCCCCEEEEEeC--CCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEE
Q 010470 298 SGRVRHTLTGHT-------DKVCAVDVSKISSRHVVSAAY--DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFS 368 (510)
Q Consensus 298 ~~~~~~~~~~~~-------~~v~~i~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 368 (510)
+++.+..+.... .....+.++| ++++++++.. ++.|.++|+.+++.+.++..... ...+....+.+++
T Consensus 118 t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~ 194 (386)
T 3sjl_D 118 TLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFM 194 (386)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEE
T ss_pred CCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeEE
Confidence 999888775321 2456789999 7777777653 68999999999999998866542 1223224456667
Q ss_pred ecCCCcEEEEECCC-Cceeeeecc---cccccEE-EEEEc-CCCCEEEEEecCCcEEEEEcCCce--eeeEeec------
Q 010470 369 GHIDGNLRLWDIQT-GKLLSEVAA---HSLAAVT-SISLS-RSGNIILTSGRDNLHNLFDIRSLE--VCGSLRA------ 434 (510)
Q Consensus 369 ~~~dg~i~i~d~~~-~~~~~~~~~---~~~~~i~-~i~~~-~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~------ 434 (510)
.+.||.+.+.++.+ ++....... ....++. ...|. ++|++++ .+.+|.++++|+.+.. ....+..
T Consensus 195 ~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~ 273 (386)
T 3sjl_D 195 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAER 273 (386)
T ss_dssp EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHH
T ss_pred ECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccc
Confidence 77888888888875 554321111 0001221 23554 6776555 4458999999997653 3333321
Q ss_pred CCCeeecCceeEEEcCCCCEEEEEcC----------CCeEEEEeCCCcceeecccccCcCEEEEEEeCCCC-cEEEe-eC
Q 010470 435 TGNRVASNWSRSCISPDESYVAAGSA----------DGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGK-PLASA-DK 502 (510)
Q Consensus 435 ~~~~~~~~~~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~~ 502 (510)
........+..++++++++.+++... .+.|.++|+.+++.+..+... ..+.+++++||++ .|+++ ..
T Consensus 274 ~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~ 352 (386)
T 3sjl_D 274 ADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTG 352 (386)
T ss_dssp HTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETT
T ss_pred cccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCC
Confidence 01122233444788999998887643 257999999999999888643 3678999999997 56654 55
Q ss_pred CCeEEEcC
Q 010470 503 NGVVCVWT 510 (510)
Q Consensus 503 dg~i~iwd 510 (510)
++.|.++|
T Consensus 353 ~~~VsViD 360 (386)
T 3sjl_D 353 DKTLYIHD 360 (386)
T ss_dssp TTEEEEEE
T ss_pred CCeEEEEE
Confidence 88998876
No 197
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.75 E-value=3.7e-16 Score=147.00 Aligned_cols=231 Identities=13% Similarity=0.124 Sum_probs=156.0
Q ss_pred cceEEEEEecCCCEEEEeeCC---C--eEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCC------------
Q 010470 226 GGCASILFEYNSARLISGGQD---K--SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS------------ 288 (510)
Q Consensus 226 ~~v~~~~~s~~~~~l~s~~~d---g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------ 288 (510)
..+.++.|||||++|+.++.+ + .|.+|++.+++....... .. +..+.|+|||+.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 468889999999999887754 3 488888888776544333 33 8999999999999888742
Q ss_pred ---------------CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCC---------cEEEEECCCCeE
Q 010470 289 ---------------NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR---------TLKVWDLHKGYC 344 (510)
Q Consensus 289 ---------------~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg---------~i~iwd~~~~~~ 344 (510)
..|++||+.+++.+..+.. . .+..+.|+| ++ ++++++.++ .|.++| ++..
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~ 210 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWE--DGKE 210 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEE--TTEE
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC-Ce-EEEEEecccccccccccccEEEeC--CCce
Confidence 5799999988876455554 3 788999999 66 777775542 455556 5654
Q ss_pred eeeeeecCceeEEEEcCCCCEEEEecCC--------CcEEEEECCCCceeeeecccccccEEE-EEEcCCCCEEEEEecC
Q 010470 345 VNTIIFHSNCNALAFSMDGQTIFSGHID--------GNLRLWDIQTGKLLSEVAAHSLAAVTS-ISLSRSGNIILTSGRD 415 (510)
Q Consensus 345 ~~~~~~~~~i~~i~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~i~~-i~~~~~~~~l~~~~~d 415 (510)
...... ..+.. ++|+|+.|+.++.+ +.|++|| +++.......+ ...+.. +.|+ ++ ++++++.+
T Consensus 211 ~~l~~~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~-~~~~~~~~~~s-dg-~~~~~~~~ 282 (347)
T 2gop_A 211 EKMFEK-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEV-DRGVGQAKIKD-GK-VYFTLFEE 282 (347)
T ss_dssp EEEEEE-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTC-CSEEEEEEEET-TE-EEEEEEET
T ss_pred EEeccC-cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccC-CcccCCccEEc-Cc-EEEEEecC
Confidence 433333 33333 48999988766543 4688888 55543333333 367776 8999 88 88899999
Q ss_pred CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeE-EEEeCCCcceeecccccC
Q 010470 416 NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSV-YIWSISKADIVRTLKEHT 482 (510)
Q Consensus 416 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i-~iwd~~~~~~~~~~~~~~ 482 (510)
+.+++| +.+++....+. .... +..++|+| .++++++.++.. .+|.+. ++ ...+..|.
T Consensus 283 ~~~~l~-~~~g~~~~~~~-~~~~----v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n 340 (347)
T 2gop_A 283 GSVNLY-IWDGEIKPIAK-GRHW----IMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYN 340 (347)
T ss_dssp TEEEEE-EESSSEEEEEC-SSSE----EEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTT
T ss_pred CcEEEE-EcCCceEEEec-CCCe----EEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEecccc
Confidence 999999 87655433332 2322 34478899 677776666654 666665 44 33444444
No 198
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.73 E-value=8.5e-15 Score=135.58 Aligned_cols=242 Identities=13% Similarity=0.139 Sum_probs=169.2
Q ss_pred cccccceEEEEEecCCCEEEE-------eeCCCeEEEEeCCCCcceeccc----ccccceeEEEEecC-CCEEEEEeCCC
Q 010470 222 NAHEGGCASILFEYNSARLIS-------GGQDKSIKLWDTNTGSLSSTLY----GCLGSVLDLAITHD-NRSVIAASSSN 289 (510)
Q Consensus 222 ~~h~~~v~~~~~s~~~~~l~s-------~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~~~~~d~ 289 (510)
........+++|+++|.++++ +..++.|.+||..+++...... ++...+.+++++++ ++ +++++..+
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~ 92 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRL 92 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCC
Confidence 334456789999999988888 6778999999988776533221 24567899999999 65 44455455
Q ss_pred eEEEEEcCCCCeeEe-ecC----CCCceEEEEEecCCCCEEEEEeCC---------------CcEEEEECCCCeEeeeee
Q 010470 290 NLYVWDVNSGRVRHT-LTG----HTDKVCAVDVSKISSRHVVSAAYD---------------RTLKVWDLHKGYCVNTII 349 (510)
Q Consensus 290 ~i~iwd~~~~~~~~~-~~~----~~~~v~~i~~~~~~~~~l~s~~~d---------------g~i~iwd~~~~~~~~~~~ 349 (510)
.|.+||.. ++.... ... ....+.++++.+ +++++++...+ +.|..||.. +.......
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~ 169 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT 169 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc
Confidence 79999988 765433 221 124578999998 67777766554 578888876 55544444
Q ss_pred ecCceeEEEEc----CCCCEEEE-ecCCCcEEEEECC-CCce-----eeeecccccccEEEEEEcCCCCEEEEEecCCcE
Q 010470 350 FHSNCNALAFS----MDGQTIFS-GHIDGNLRLWDIQ-TGKL-----LSEVAAHSLAAVTSISLSRSGNIILTSGRDNLH 418 (510)
Q Consensus 350 ~~~~i~~i~~~----~~~~~l~~-~~~dg~i~i~d~~-~~~~-----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i 418 (510)
....+..++++ |+++.+++ ...++.|.+||+. ++.. ...+..+....+..++++++|+++++...++.|
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i 249 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI 249 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence 44557889999 99976554 4567899999976 4432 122221111457889999999988888888999
Q ss_pred EEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEE-EEcCCCeEEEEeCCC
Q 010470 419 NLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVA-AGSADGSVYIWSISK 471 (510)
Q Consensus 419 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~ 471 (510)
.+||..+++....+..+.. .+..++++|+|+.|+ +...++.|..|++..
T Consensus 250 ~~~d~~~g~~~~~~~~~~~----~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 250 EVFGPDGGQPKMRIRCPFE----KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEECTTCBSCSEEEECSSS----CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEcCCCCcEeEEEeCCCC----CceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 9999987766665554432 234588999999554 455668899999865
No 199
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.73 E-value=8.2e-16 Score=145.51 Aligned_cols=269 Identities=10% Similarity=0.052 Sum_probs=189.2
Q ss_pred cCCCEEEEeeC-C----CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe----------CCCeEEEEEcCCC
Q 010470 235 YNSARLISGGQ-D----KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS----------SSNNLYVWDVNSG 299 (510)
Q Consensus 235 ~~~~~l~s~~~-d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~ 299 (510)
++++.+++... + +.|.++|..+++.+.++.....+ .+.++||+++++++. .++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 35555555443 2 69999999999999888765555 899999999998886 3678999999999
Q ss_pred CeeEeecCC-------CCceEEEEEecCCCCEEEEEeC--CCcEEEEECCCCeEeeeeeecCceeEEEEcCCC-CEEEEe
Q 010470 300 RVRHTLTGH-------TDKVCAVDVSKISSRHVVSAAY--DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDG-QTIFSG 369 (510)
Q Consensus 300 ~~~~~~~~~-------~~~v~~i~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~ 369 (510)
+.+..+.-. ......+.++| ++++++++.. ++.|.++|+.+++.+..+..... ....|++ ..+++.
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMN 235 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEE
Confidence 988877522 23456788999 7888777763 57899999999999888876442 2334433 555666
Q ss_pred cCCCcEEEEECCCCceeee----ecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceee--eEeecC------CC
Q 010470 370 HIDGNLRLWDIQTGKLLSE----VAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVC--GSLRAT------GN 437 (510)
Q Consensus 370 ~~dg~i~i~d~~~~~~~~~----~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~------~~ 437 (510)
+.||.+.+.+..+++.... +..........+.|++++..++..+..+.+.+.|....... ..+... ..
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g 315 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADD 315 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGT
T ss_pred cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccc
Confidence 6788888888755554422 21111011123567899888887788899999998754422 111110 01
Q ss_pred eeecCceeEEEcCCCCEEEEEcC----------CCeEEEEeCCCcceeecccccCcCEEEEEEeCCCC-cEEEee-CCCe
Q 010470 438 RVASNWSRSCISPDESYVAAGSA----------DGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGK-PLASAD-KNGV 505 (510)
Q Consensus 438 ~~~~~~~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~-~dg~ 505 (510)
.....+..++++|+++.+++... ++.|.++|+.+++.+.++.... ...+++|+|||+ .++++. .++.
T Consensus 316 ~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~ 394 (426)
T 3c75_H 316 WRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQT 394 (426)
T ss_dssp EEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTE
T ss_pred cccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCe
Confidence 11122223789999988777642 3579999999999999886433 478999999999 787777 5899
Q ss_pred EEEcC
Q 010470 506 VCVWT 510 (510)
Q Consensus 506 i~iwd 510 (510)
|.++|
T Consensus 395 VsVID 399 (426)
T 3c75_H 395 LHIYD 399 (426)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99886
No 200
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.73 E-value=2.4e-14 Score=134.94 Aligned_cols=249 Identities=10% Similarity=-0.027 Sum_probs=175.9
Q ss_pred ceeeccccccceEEEEEecCCCEEEEee----------CCCeEEEEeCCCCcceeccccc-------ccceeEEEEecCC
Q 010470 217 CKHKINAHEGGCASILFEYNSARLISGG----------QDKSIKLWDTNTGSLSSTLYGC-------LGSVLDLAITHDN 279 (510)
Q Consensus 217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~ 279 (510)
...++.....+ .++|||||++++++. .++.|.+||..+.+.+..+... ......+.|+|||
T Consensus 59 ~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG 136 (373)
T 2mad_H 59 ILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNN 136 (373)
T ss_pred EEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCC
Confidence 34444443344 999999999998886 3678999999988877665422 1234689999999
Q ss_pred CEEEEEeC--CCeEEEEEcCCCCeeEe-ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee-----ec
Q 010470 280 RSVIAASS--SNNLYVWDVNSGRVRHT-LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII-----FH 351 (510)
Q Consensus 280 ~~l~~~~~--d~~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~ 351 (510)
++|++++. ++.|.++| .+++.+.. +.... ++.+.|.....+++.+.||.+.++|. +++...... ..
T Consensus 137 ~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~ 210 (373)
T 2mad_H 137 ADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTA 210 (373)
T ss_pred CEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccC
Confidence 99999874 57899999 99998877 65322 24455655667778888999999999 887663322 11
Q ss_pred -Cc-eeEEEEcCCCCEEEEecCCCcEEEEECCCCc--eeeeeccc---------ccccEEEEEEcCCCCEEEEEec----
Q 010470 352 -SN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGK--LLSEVAAH---------SLAAVTSISLSRSGNIILTSGR---- 414 (510)
Q Consensus 352 -~~-i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~---------~~~~i~~i~~~~~~~~l~~~~~---- 414 (510)
.+ .....+.+++..++..+..+.+.+.|+..+. .+..+... .......+.++|+++.+++...
T Consensus 211 ~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~ 290 (373)
T 2mad_H 211 AQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSA 290 (373)
T ss_pred CcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCc
Confidence 11 1234556666555544567899999986543 22222110 0123445789999998887653
Q ss_pred ------CCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCC-EEEEEc-CCCeEEEEeCCCcceeecc
Q 010470 415 ------DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES-YVAAGS-ADGSVYIWSISKADIVRTL 478 (510)
Q Consensus 415 ------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~ 478 (510)
++.|.++|+.+++.+..+.....+ ..+.|+|||+ +++++. .++.|.+||+.+++.+..+
T Consensus 291 ~~~~~~~~~V~VID~~t~~vv~~i~~g~~p-----~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 291 WKLHAAAKEVTSVTGLVGQTSSQISLGHDV-----DAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred ccccCCCCeEEEEECCCCEEEEEEECCCCc-----CeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 357999999999998888654432 3389999999 777777 4899999999999998874
No 201
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.72 E-value=3e-16 Score=161.67 Aligned_cols=266 Identities=11% Similarity=-0.008 Sum_probs=169.9
Q ss_pred cCCCEEEEeeCCC-----eEEEEeCCCCcceecc------cccccceeEEEEecCCCEEEEEe-----CCCeEEEEEcCC
Q 010470 235 YNSARLISGGQDK-----SIKLWDTNTGSLSSTL------YGCLGSVLDLAITHDNRSVIAAS-----SSNNLYVWDVNS 298 (510)
Q Consensus 235 ~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~-----~d~~i~iwd~~~ 298 (510)
|+|++++....++ .|.+.+...+.....+ .+|...+.+++|||||++|+.+. .+..|++||+.+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 5677666555433 2444444444332221 24555789999999999998543 346899999999
Q ss_pred CCeeEeecCCCCce--EEEEEecCCCCEEEEEeCCCc-------------EEEEECCCCeEe--eeee--ec-CceeEEE
Q 010470 299 GRVRHTLTGHTDKV--CAVDVSKISSRHVVSAAYDRT-------------LKVWDLHKGYCV--NTII--FH-SNCNALA 358 (510)
Q Consensus 299 ~~~~~~~~~~~~~v--~~i~~~~~~~~~l~s~~~dg~-------------i~iwd~~~~~~~--~~~~--~~-~~i~~i~ 358 (510)
++.+. ..+...+ ..++|+| ++..|+.++.|.. |++|++.++... ..+. .+ ..+.++.
T Consensus 157 g~~~~--~~~~~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~ 233 (695)
T 2bkl_A 157 GEWSK--VDVIEGGKYATPKWTP-DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSD 233 (695)
T ss_dssp CCBCS--SCCBSCCTTCCCEECT-TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEE
T ss_pred CCCcC--CcccCcccccceEEec-CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEE
Confidence 88651 1121222 6789999 7888888887766 999999877621 2222 22 3478999
Q ss_pred EcCCCCEEEEecCCC----cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEe---cCCcEEEEEcCCcee--e
Q 010470 359 FSMDGQTIFSGHIDG----NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG---RDNLHNLFDIRSLEV--C 429 (510)
Q Consensus 359 ~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~d~~i~i~d~~~~~~--~ 429 (510)
|+|||++|+.++.++ .|++||..++.. ..+..+. ..+....+ ++|.+++.+. .++.|.+||+.++.. .
T Consensus 234 ~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~-~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~ 310 (695)
T 2bkl_A 234 LSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGV-GAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASW 310 (695)
T ss_dssp ECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECS-SCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGC
T ss_pred ECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCC-CceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCC
Confidence 999999998777655 678887655543 3344333 34455555 5666444443 257899999987642 1
Q ss_pred eEeecCC-CeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC-Ccceeeccccc-CcCEEEEEEeCCCCcEEE----eeC
Q 010470 430 GSLRATG-NRVASNWSRSCISPDESYVAAGSADGSVYIWSIS-KADIVRTLKEH-TAPVLSCSWSGLGKPLAS----ADK 502 (510)
Q Consensus 430 ~~~~~~~-~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s----~~~ 502 (510)
..+..+. .. .+..++++ ++.++++...|+..++|.+. +++....+..+ .+.+..++++|++..|+. ...
T Consensus 311 ~~l~~~~~~~---~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~ 386 (695)
T 2bkl_A 311 KEIVPEDSSA---SLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTT 386 (695)
T ss_dssp EEEECCCSSC---EEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTE
T ss_pred eEEecCCCCC---eEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCC
Confidence 2222222 11 12235666 77788888889988887654 35555556554 567788899999987663 233
Q ss_pred CCeEEEcC
Q 010470 503 NGVVCVWT 510 (510)
Q Consensus 503 dg~i~iwd 510 (510)
.+.|++||
T Consensus 387 P~~v~~~d 394 (695)
T 2bkl_A 387 PRQIYKTS 394 (695)
T ss_dssp EEEEEEEE
T ss_pred CCEEEEEE
Confidence 46788775
No 202
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.72 E-value=3.4e-15 Score=138.60 Aligned_cols=266 Identities=12% Similarity=0.084 Sum_probs=185.8
Q ss_pred ccceeeccccccceEEEEEecCCCEEEEee----------CCCeEEEEeCCCCcceeccccc-------ccceeEEEEec
Q 010470 215 STCKHKINAHEGGCASILFEYNSARLISGG----------QDKSIKLWDTNTGSLSSTLYGC-------LGSVLDLAITH 277 (510)
Q Consensus 215 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~ 277 (510)
.+...++..-..+ .++++|||+++++++ .++.|.+||..+++.+..+... ......+.|+|
T Consensus 69 ~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp 146 (386)
T 3sjl_D 69 GRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP 146 (386)
T ss_dssp TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT
T ss_pred CeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC
Confidence 3445555544445 499999999888775 3678999999999988776432 12466799999
Q ss_pred CCCEEEEEeC--CCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC-CeEeeeeeec---
Q 010470 278 DNRSVIAASS--SNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK-GYCVNTIIFH--- 351 (510)
Q Consensus 278 ~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~--- 351 (510)
||++++++.. ++.|.++|+.+++.+.++.... |..+.|.+...+++.+.||.+.+.++.+ ++........
T Consensus 147 DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~ 222 (386)
T 3sjl_D 147 DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP 222 (386)
T ss_dssp TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC
T ss_pred CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecc
Confidence 9999998874 6899999999999988886422 1223354667788888899999999976 5543221111
Q ss_pred --Cce-eEEEEc-CCCCEEEEecCCCcEEEEECCCCc--eeeeec---------ccccccEEEEEEcCCCCEEEEEec--
Q 010470 352 --SNC-NALAFS-MDGQTIFSGHIDGNLRLWDIQTGK--LLSEVA---------AHSLAAVTSISLSRSGNIILTSGR-- 414 (510)
Q Consensus 352 --~~i-~~i~~~-~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~---------~~~~~~i~~i~~~~~~~~l~~~~~-- 414 (510)
..+ ....|. ++|++++ .+.+|.|+++|+.++. ....+. .-.......+.++|+++.+++...
T Consensus 223 ~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~ 301 (386)
T 3sjl_D 223 EDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQR 301 (386)
T ss_dssp TTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred ccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccc
Confidence 111 224553 6776655 4447999999997654 333332 000123445778999998888653
Q ss_pred --------CCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCC-EEEEE-cCCCeEEEEeCCCcceeecccccCcC
Q 010470 415 --------DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES-YVAAG-SADGSVYIWSISKADIVRTLKEHTAP 484 (510)
Q Consensus 415 --------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~ 484 (510)
.+.|.++|+.+++.+..+..... ...+.+++|++ +|++. ..++.|.++|..+++.+.++.... .
T Consensus 302 ~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~-----~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~-~ 375 (386)
T 3sjl_D 302 DEWRHKTASRFVVVLDAKTGERLAKFEMGHE-----IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG-H 375 (386)
T ss_dssp CTTCTTSCEEEEEEEETTTCCEEEEEEEEEE-----ECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCC-S
T ss_pred cccccCCCCCEEEEEECCCCeEEEEEECCCC-----cceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCC-C
Confidence 25799999999999988875432 23389999997 66664 558999999999999998887532 3
Q ss_pred EEEEEEeCC
Q 010470 485 VLSCSWSGL 493 (510)
Q Consensus 485 v~~~~~~~~ 493 (510)
.+.+.+++|
T Consensus 376 p~~l~~s~d 384 (386)
T 3sjl_D 376 GPQVITTAD 384 (386)
T ss_dssp SCCEEEECC
T ss_pred CceeEECCc
Confidence 356677766
No 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.71 E-value=1e-14 Score=134.94 Aligned_cols=237 Identities=10% Similarity=0.109 Sum_probs=163.2
Q ss_pred cceeEEEEecCCCEEEE-------EeCCCeEEEEEcCCCCeeEeec----CCCCceEEEEEecCC-CCEEEEEeCCCcEE
Q 010470 268 GSVLDLAITHDNRSVIA-------ASSSNNLYVWDVNSGRVRHTLT----GHTDKVCAVDVSKIS-SRHVVSAAYDRTLK 335 (510)
Q Consensus 268 ~~v~~~~~~~~~~~l~~-------~~~d~~i~iwd~~~~~~~~~~~----~~~~~v~~i~~~~~~-~~~l~s~~~dg~i~ 335 (510)
....+++|++++.++++ +..++.|.+||..+++...... ++...+.++.+.+ + +.+++ ++..+.|.
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v-~~~~~~l~ 95 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFV-ADMRLGLL 95 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEE-EETTTEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-CCCcEEE-EECCCCEE
Confidence 45678999999987777 5778899999988877543222 2456789999988 5 55444 44455799
Q ss_pred EEECCCCeEeee-eee-----cCceeEEEEcCCCCEEEEecCC---------------CcEEEEECCCCceeeeeccccc
Q 010470 336 VWDLHKGYCVNT-IIF-----HSNCNALAFSMDGQTIFSGHID---------------GNLRLWDIQTGKLLSEVAAHSL 394 (510)
Q Consensus 336 iwd~~~~~~~~~-~~~-----~~~i~~i~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~~~~~~ 394 (510)
+||.. ++.... ... ...+.+++++++|+++++...+ +.|..||.. ++...... ..
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-~~- 171 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-AF- 171 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-EE-
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc-CC-
Confidence 99998 665433 221 1247899999999988777654 578888875 55433322 22
Q ss_pred ccEEEEEEc----CCCCEEEEE-ecCCcEEEEEcC-Cceee--eEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEE
Q 010470 395 AAVTSISLS----RSGNIILTS-GRDNLHNLFDIR-SLEVC--GSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYI 466 (510)
Q Consensus 395 ~~i~~i~~~----~~~~~l~~~-~~d~~i~i~d~~-~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~i 466 (510)
..+..++++ |+++.++++ ..++.|.+||+. ++... ..+.............++++++|+++++...++.|.+
T Consensus 172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~ 251 (314)
T 1pjx_A 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV 251 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEE
Confidence 457889999 999766555 567899999976 34321 1111111000012234889999998888877889999
Q ss_pred EeCCCcceeecccccCcCEEEEEEeCCCCcEE-EeeCCCeEEEcC
Q 010470 467 WSISKADIVRTLKEHTAPVLSCSWSGLGKPLA-SADKNGVVCVWT 510 (510)
Q Consensus 467 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd 510 (510)
||..+++.+..+..+...+.+++|+|+|+.|+ +...++.|..|+
T Consensus 252 ~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 252 FGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp ECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence 99887877777766767899999999999554 555567777764
No 204
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.71 E-value=4.2e-14 Score=129.80 Aligned_cols=236 Identities=10% Similarity=0.040 Sum_probs=170.1
Q ss_pred ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEe-ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 010470 265 GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT-LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY 343 (510)
Q Consensus 265 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 343 (510)
.+...+.+++++++|+.+++...++.|.+||.. +..... ...+...+.++++.+ ++.++++...++.|..||.. +.
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~ 88 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISS-DGEVWFTENAANKIGRITKK-GI 88 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SC
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECC-CCCEEEeCCCCCeEEEECCC-Cc
Confidence 345678999999999977776668899999988 654332 223457789999988 67777776668899999986 43
Q ss_pred Eeeeeee---cCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEE
Q 010470 344 CVNTIIF---HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNL 420 (510)
Q Consensus 344 ~~~~~~~---~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i 420 (510)
. ..+.. ...+.+++++++|..+++...++.|.+||. +++............+.+++++++|.++++...++.|..
T Consensus 89 ~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 166 (299)
T 2z2n_A 89 I-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGR 166 (299)
T ss_dssp E-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred E-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEE
Confidence 2 22322 245889999999998888877889999998 655443322222357899999999988887777889999
Q ss_pred EEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeec-ccccCcCEEEEEEeCCCCcEEE
Q 010470 421 FDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRT-LKEHTAPVLSCSWSGLGKPLAS 499 (510)
Q Consensus 421 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s 499 (510)
||. +++.... ..... ......++++++|.++++...++.|.+|+. ++..... +..+...+.+++++++|..+++
T Consensus 167 ~~~-~g~~~~~-~~~~~--~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~ 241 (299)
T 2z2n_A 167 ITE-SGDITEF-KIPTP--ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFT 241 (299)
T ss_dssp ECT-TCCEEEE-ECSST--TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EcC-CCcEEEe-eCCCC--CCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEe
Confidence 998 6554432 11111 122345889999998887777889999998 6654322 3334567899999999986666
Q ss_pred eeCCCeEEEcC
Q 010470 500 ADKNGVVCVWT 510 (510)
Q Consensus 500 ~~~dg~i~iwd 510 (510)
...++.|..||
T Consensus 242 ~~~~~~i~~~d 252 (299)
T 2z2n_A 242 EWGANKIGRLT 252 (299)
T ss_dssp ETTTTEEEEEE
T ss_pred ccCCceEEEEC
Confidence 65677887774
No 205
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.70 E-value=2.7e-14 Score=136.58 Aligned_cols=239 Identities=12% Similarity=0.106 Sum_probs=169.1
Q ss_pred ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCC--eEEEEEcCCCCee
Q 010470 225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSN--NLYVWDVNSGRVR 302 (510)
Q Consensus 225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~ 302 (510)
-.....++|+++|+++++...++.|++||..++........ ..... ++|+|+++.|+++..++ .|.+|+...+...
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 34688999999999888888889999999988776544433 23334 99999999999998766 8999998766544
Q ss_pred Eee----cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeee----eeecCc--ee-EEEEcCC-CCEEEEec
Q 010470 303 HTL----TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT----IIFHSN--CN-ALAFSMD-GQTIFSGH 370 (510)
Q Consensus 303 ~~~----~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~--i~-~i~~~~~-~~~l~~~~ 370 (510)
..+ ......+.+++++| ++..|+.+..++.|..||..++..... ...... +. .++|+|+ +.++++..
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p-~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDE-TEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECT-TSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred EEeeeccchhcCCcEEEEEeC-CCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 444 22456678899998 444555577788999999987753222 111111 23 9999995 66666777
Q ss_pred CCCcEEEEECCCCceeeeecccc--------------cccEEEEEEcCCCCEEEEEe-cCCcEEEEEcCCceeeeEeecC
Q 010470 371 IDGNLRLWDIQTGKLLSEVAAHS--------------LAAVTSISLSRSGNIILTSG-RDNLHNLFDIRSLEVCGSLRAT 435 (510)
Q Consensus 371 ~dg~i~i~d~~~~~~~~~~~~~~--------------~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~ 435 (510)
.++.|+.|+.... +..+.... ...+..++++|+|+++++.. .++.|+.|++.++.... +.+.
T Consensus 287 ~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~-~~g~ 363 (409)
T 3hrp_A 287 NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVST-VAGQ 363 (409)
T ss_dssp TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEE-EEEC
T ss_pred CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEE-EeCC
Confidence 7889999997533 22222211 24588999999999888887 88999999987776433 3222
Q ss_pred C-C----------eeecCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470 436 G-N----------RVASNWSRSCISPDESYVAAGSADGSVYIWSI 469 (510)
Q Consensus 436 ~-~----------~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~ 469 (510)
. . ........++++++|.++++...++.|+.+++
T Consensus 364 ~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 364 VDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 1 0 00123456899999988888888999988875
No 206
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.68 E-value=5.5e-15 Score=138.52 Aligned_cols=261 Identities=12% Similarity=0.080 Sum_probs=172.0
Q ss_pred cceEEEEEecCCCEEEEee--CCCeEEEEeCCCCcce------ecccccccceeEEEEecCCCEEEEEeC-----CCeEE
Q 010470 226 GGCASILFEYNSARLISGG--QDKSIKLWDTNTGSLS------STLYGCLGSVLDLAITHDNRSVIAASS-----SNNLY 292 (510)
Q Consensus 226 ~~v~~~~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~ 292 (510)
..+..++++++|+++++.. .++.++||.+.+++.. .....+...+.+++++++++++++... ++.|.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 6789999999999988864 2343555555455432 111234568899999999886665544 57999
Q ss_pred EEEcCCCCeeEeecCC------CCceEEEEEecCCCCEEEEEe---CCCcEEEEECCCCeEeeeeeecCc--eeEEEEcC
Q 010470 293 VWDVNSGRVRHTLTGH------TDKVCAVDVSKISSRHVVSAA---YDRTLKVWDLHKGYCVNTIIFHSN--CNALAFSM 361 (510)
Q Consensus 293 iwd~~~~~~~~~~~~~------~~~v~~i~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~--i~~i~~~~ 361 (510)
+||+.+++.+..+... ...+..+++.+.++..+++.. .++.|.+||+.+++....+..+.. .....+.+
T Consensus 97 ~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~ 176 (343)
T 2qe8_A 97 AWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVI 176 (343)
T ss_dssp EEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEE
T ss_pred EEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeE
Confidence 9999999877666432 235688999874454555555 578999999998876665543211 11144455
Q ss_pred CCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCC-cEEEEEcC---Cce-----eee--
Q 010470 362 DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDN-LHNLFDIR---SLE-----VCG-- 430 (510)
Q Consensus 362 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~-~i~i~d~~---~~~-----~~~-- 430 (510)
+|..+.+.+.+|.+..|. ..+..|+|+|+|+.|+++...+ .+..++.. .+. ...
T Consensus 177 ~g~~~~~~~~~g~~~~~~---------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
T 2qe8_A 177 DGVPVQIGQPDGTVIRPH---------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKI 241 (343)
T ss_dssp TTEECBEECTTSCEECCC---------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTC
T ss_pred CCEEEEeccCCCceecee---------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcce
Confidence 677777777777775543 2467899999999888887665 55555532 110 000
Q ss_pred EeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccc-cCcCEEEEEEeCCCCcEEEeeCCCe
Q 010470 431 SLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE-HTAPVLSCSWSGLGKPLASADKNGV 505 (510)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~ 505 (510)
...+... ....++++++|.++++...++.|.+||..+++....... +...+.+++|.++|.++++.+..+.
T Consensus 242 ~~~g~~g----~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~ 313 (343)
T 2qe8_A 242 ERYSEKP----ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHH 313 (343)
T ss_dssp EEEEECC----SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGG
T ss_pred EecccCC----CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccc
Confidence 0001111 223489999999999999999999999855654332222 2456899999999987777664433
No 207
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.68 E-value=1.2e-14 Score=137.59 Aligned_cols=253 Identities=12% Similarity=0.043 Sum_probs=181.4
Q ss_pred ccceeeccccccceEEEEEecCCCEEEEee----------CCCeEEEEeCCCCcceeccccc-------ccceeEEEEec
Q 010470 215 STCKHKINAHEGGCASILFEYNSARLISGG----------QDKSIKLWDTNTGSLSSTLYGC-------LGSVLDLAITH 277 (510)
Q Consensus 215 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~ 277 (510)
.+.+.++..-..+ .++++|||++++++. .++.|.++|..+++.+..+.-. ......+.|+|
T Consensus 109 ~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp 186 (426)
T 3c75_H 109 GRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP 186 (426)
T ss_dssp TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT
T ss_pred CEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC
Confidence 3444555544445 899999999888876 3678999999999988776421 23456799999
Q ss_pred CCCEEEEEeC--CCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeee----eeec
Q 010470 278 DNRSVIAASS--SNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT----IIFH 351 (510)
Q Consensus 278 ~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~ 351 (510)
||++++++.. ++.|.++|+.+++.+..+..... ....|.....+++.+.||.+.+.+..+++.... +...
T Consensus 187 DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~ 262 (426)
T 3c75_H 187 DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTE 262 (426)
T ss_dssp TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCT
T ss_pred CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccC
Confidence 9999999874 57999999999998888764221 233453456777788899999999866655432 1111
Q ss_pred Cc--eeEEEEcCCCCEEEEecCCCcEEEEECCCCcee--eeeccc---------ccccEEEEEEcCCCCEEEEEec----
Q 010470 352 SN--CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL--SEVAAH---------SLAAVTSISLSRSGNIILTSGR---- 414 (510)
Q Consensus 352 ~~--i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~---------~~~~i~~i~~~~~~~~l~~~~~---- 414 (510)
.. ...+.+.+++..++..+..|.|.+.|....... ..+... .......+.++|+++.+++...
T Consensus 263 ~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~ 342 (426)
T 3c75_H 263 DELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDE 342 (426)
T ss_dssp TSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCT
T ss_pred CCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccc
Confidence 11 234567888888777777899999998654321 111100 0012223789999988777643
Q ss_pred ------CCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCC-EEEEEc-CCCeEEEEeCCCcceeecc
Q 010470 415 ------DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES-YVAAGS-ADGSVYIWSISKADIVRTL 478 (510)
Q Consensus 415 ------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~ 478 (510)
++.|.++|+.+.+.+..+.....+ ..+.|+|||+ ++++.. .++.|.|+|+.+++.+.++
T Consensus 343 gthk~~s~~VsVID~~T~kvv~~I~vg~~P-----~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 343 WKHKAASRFVVVLNAETGERINKIELGHEI-----DSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp TCTTSCEEEEEEEETTTCCEEEEEEEEEEE-----CEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred ccccCCCCEEEEEECCCCeEEEEEECCCCc-----CeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 357999999999999988654432 3389999999 888877 5899999999999999886
No 208
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.68 E-value=7.2e-15 Score=152.48 Aligned_cols=266 Identities=9% Similarity=0.014 Sum_probs=168.1
Q ss_pred cCCCEEEEeeCCCe---EEEE--eCC---CCcceec------ccccccceeEEEEecCCCEEEEEeCC-----CeEEEEE
Q 010470 235 YNSARLISGGQDKS---IKLW--DTN---TGSLSST------LYGCLGSVLDLAITHDNRSVIAASSS-----NNLYVWD 295 (510)
Q Consensus 235 ~~~~~l~s~~~dg~---i~iw--d~~---~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd 295 (510)
|+|++++....++. -.+| +.. .+..... -.+|...+..++|||||++|+.++.+ ..|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 77877766554332 4444 333 3332211 12233478899999999999887653 4699999
Q ss_pred cCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCc--------------EEEEECCCCeE--eeeeeecC---ceeE
Q 010470 296 VNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRT--------------LKVWDLHKGYC--VNTIIFHS---NCNA 356 (510)
Q Consensus 296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~--------------i~iwd~~~~~~--~~~~~~~~---~i~~ 356 (510)
+.+++.+... .+...+..++|+| + +.|+.++.++. |++|++.++.. ...+.... .+..
T Consensus 196 l~tg~~~~~~-~~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~ 272 (741)
T 1yr2_A 196 VADGKPLADE-LKWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG 272 (741)
T ss_dssp TTTCCEEEEE-EEEEESCCCEEST-T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred CCCCCCCCcc-CCCceeccEEEEC-C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence 9999875431 1222235788999 6 77777666543 89999977652 12222221 3788
Q ss_pred EEEcCCCCEEEEecCCC-----cEEEEECCCC--ceeeeecccccccEEEEEEcCCCCEEEEEecC----CcEEEEEcCC
Q 010470 357 LAFSMDGQTIFSGHIDG-----NLRLWDIQTG--KLLSEVAAHSLAAVTSISLSRSGNIILTSGRD----NLHNLFDIRS 425 (510)
Q Consensus 357 i~~~~~~~~l~~~~~dg-----~i~i~d~~~~--~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----~~i~i~d~~~ 425 (510)
+.|+|||++|+..+.++ .|++||+.++ .....+..+. ..+... ++|+|+.|+..+.+ +.|.+||+.+
T Consensus 273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~ 350 (741)
T 1yr2_A 273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDL-KAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSG 350 (741)
T ss_dssp EEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSS-SSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred EEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCC-CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 99999999988766443 7999999876 3144444443 333333 34889988877754 4599999987
Q ss_pred c--eeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC-Ccceeecccc-cCcCEEEEEEeCCCCcEEE--
Q 010470 426 L--EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS-KADIVRTLKE-HTAPVLSCSWSGLGKPLAS-- 499 (510)
Q Consensus 426 ~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s-- 499 (510)
+ .....+...... +..+.++ ++.++++...||..+||.+. ++.....+.. +.+.+..++++|+++.|+.
T Consensus 351 ~~~~~~~l~~~~~~~----l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ 425 (741)
T 1yr2_A 351 STPRFDTVVPESKDN----LESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSF 425 (741)
T ss_dssp SSCEEEEEECCCSSE----EEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEE
T ss_pred CccccEEEecCCCCe----EEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEE
Confidence 4 333333333222 2235555 56678888888887777554 4555555654 3567889999999986663
Q ss_pred --eeCCCeEEEcC
Q 010470 500 --ADKNGVVCVWT 510 (510)
Q Consensus 500 --~~~dg~i~iwd 510 (510)
....+.|++||
T Consensus 426 ss~~~P~~i~~~d 438 (741)
T 1yr2_A 426 SSFTQPATVLALD 438 (741)
T ss_dssp EETTEEEEEEEEE
T ss_pred cCCCCCCEEEEEE
Confidence 23346787775
No 209
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.67 E-value=1e-14 Score=151.41 Aligned_cols=243 Identities=12% Similarity=0.085 Sum_probs=159.9
Q ss_pred ccccceEEEEEecCCCEEEEeeCC-----CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCe-------
Q 010470 223 AHEGGCASILFEYNSARLISGGQD-----KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNN------- 290 (510)
Q Consensus 223 ~h~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~------- 290 (510)
+|...+.+++|||||++|+.++.+ ..|++||+.+++.+.. ..+...+..++|+|| +.|+.++.++.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ 237 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccc
Confidence 344578899999999999887654 4699999999887543 112223367899999 98988886553
Q ss_pred -------EEEEEcCCCCe--eEee--cCCCCceEEEEEecCCCCEEEEEeCCC-----cEEEEECCCC--eEeeeeeecC
Q 010470 291 -------LYVWDVNSGRV--RHTL--TGHTDKVCAVDVSKISSRHVVSAAYDR-----TLKVWDLHKG--YCVNTIIFHS 352 (510)
Q Consensus 291 -------i~iwd~~~~~~--~~~~--~~~~~~v~~i~~~~~~~~~l~s~~~dg-----~i~iwd~~~~--~~~~~~~~~~ 352 (510)
|++|++.++.. ...+ ..+...+.++.|+| ++++|+..+.++ .|.+||+.++ .+...+..+.
T Consensus 238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~ 316 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDL 316 (741)
T ss_dssp -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSS
T ss_pred cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCC
Confidence 89999977652 2223 23334688999999 777777666443 8999999877 3133443332
Q ss_pred -ceeEEEEcCCCCEEEEecC----CCcEEEEECCCC-ceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC-C
Q 010470 353 -NCNALAFSMDGQTIFSGHI----DGNLRLWDIQTG-KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR-S 425 (510)
Q Consensus 353 -~i~~i~~~~~~~~l~~~~~----dg~i~i~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~ 425 (510)
..... ++|+|..|+..+. ++.|.+||+.++ .....+..+....+.++.++ ++.++++...++..+||.+. +
T Consensus 317 ~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~ 394 (741)
T 1yr2_A 317 KAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLD 394 (741)
T ss_dssp SSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETT
T ss_pred CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC
Confidence 33333 3488998887664 345999999875 23333433433567778887 56677888888877776554 3
Q ss_pred ceeeeEeecCCCeeecCceeEEEcCCCCEEEEE----cCCCeEEEEeCCCcc
Q 010470 426 LEVCGSLRATGNRVASNWSRSCISPDESYVAAG----SADGSVYIWSISKAD 473 (510)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~ 473 (510)
+.....+..+.. ..+..+.++|+++.|+.. ...++|++||+.+++
T Consensus 395 g~~~~~l~~~~~---~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 395 GKPAGAVSLPGI---GSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp SCEEEECBCSSS---CEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CCceeeccCCCC---eEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 444444433211 122347788998866532 235789999998765
No 210
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.66 E-value=7.4e-14 Score=133.56 Aligned_cols=236 Identities=11% Similarity=0.104 Sum_probs=163.4
Q ss_pred cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCC--cEEEEECCCCeEe
Q 010470 268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR--TLKVWDLHKGYCV 345 (510)
Q Consensus 268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~ 345 (510)
.....++|+++++++++...++.|++||+.++......... .... ++|++ +++.++++..++ .|.+|+...+...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence 46789999999997777777899999999877765555442 3334 88998 777788777765 7999998766543
Q ss_pred eee----e-ecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeee----ecccccccEE-EEEEcCC-CCEEEEEec
Q 010470 346 NTI----I-FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSE----VAAHSLAAVT-SISLSRS-GNIILTSGR 414 (510)
Q Consensus 346 ~~~----~-~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~~i~-~i~~~~~-~~~l~~~~~ 414 (510)
..+ . ....+.+++++|++..|+++..++.|+.||..++..... .......... .++|+|+ +.++++...
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~ 287 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN 287 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence 333 2 234578999999555555577788999999987653322 1111111123 8999995 556666667
Q ss_pred CCcEEEEEcCCceeeeEeecCC---C--------eeecCceeEEEcCCCCEEEEEc-CCCeEEEEeCCCcceeeccccc-
Q 010470 415 DNLHNLFDIRSLEVCGSLRATG---N--------RVASNWSRSCISPDESYVAAGS-ADGSVYIWSISKADIVRTLKEH- 481 (510)
Q Consensus 415 d~~i~i~d~~~~~~~~~~~~~~---~--------~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~- 481 (510)
++.|+.|+.... ...+.+.. . ........++++|+|+++++.+ .++.|+.|++.++... ++.++
T Consensus 288 ~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~ 364 (409)
T 3hrp_A 288 LSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQV 364 (409)
T ss_dssp TTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECT
T ss_pred CCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCC
Confidence 789999987643 22222221 0 0012245689999999888888 8999999998777643 33222
Q ss_pred --------------CcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 482 --------------TAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 482 --------------~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
-..+.+++++|+|.++++...++.|+.+
T Consensus 365 ~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 365 DVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp TCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred CCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence 2458999999998888888888888765
No 211
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.65 E-value=1.4e-13 Score=126.81 Aligned_cols=233 Identities=15% Similarity=0.111 Sum_probs=159.7
Q ss_pred cccccccceeEEEEecCCC-EEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 010470 262 TLYGCLGSVLDLAITHDNR-SVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH 340 (510)
Q Consensus 262 ~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~ 340 (510)
.+...........|+|+++ ++++...++.|..|+. ++. ...+..+...+.++.+.+ +++++++...++.|.+||..
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRSDAD 115 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEEECTT
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECC-CCCEEEEECCCCEEEEECCC
Confidence 3444455667899999999 4555667889999997 454 344555667789999998 67766665556889999986
Q ss_pred CCeEeeeeee-----cCceeEEEEcCCCCEEEE----ecC-------------CCcEEEEECCCCceeeeecccccccEE
Q 010470 341 KGYCVNTIIF-----HSNCNALAFSMDGQTIFS----GHI-------------DGNLRLWDIQTGKLLSEVAAHSLAAVT 398 (510)
Q Consensus 341 ~~~~~~~~~~-----~~~i~~i~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~~i~ 398 (510)
+........ ...++.++++|+|+++++ |.. .+.|+.||..+++..... . .....
T Consensus 116 -g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~-~~~p~ 191 (305)
T 3dr2_A 116 -GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--D-LDHPN 191 (305)
T ss_dssp -SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--E-ESSEE
T ss_pred -CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--c-CCCCc
Confidence 553322211 124778999999998886 432 356888888777654433 2 25678
Q ss_pred EEEEcCCCCEEEEEecC------CcEEEEEcCCceee--eEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470 399 SISLSRSGNIILTSGRD------NLHNLFDIRSLEVC--GSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS 470 (510)
Q Consensus 399 ~i~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 470 (510)
.++|+|+++.|+++... +.|.+|++...... ..+.... ......++++++|++. +++.+| |.+|+.
T Consensus 192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~---~~~pdgi~~d~~G~lw-v~~~~g-v~~~~~- 265 (305)
T 3dr2_A 192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVP---DGLPDGFCVDRGGWLW-SSSGTG-VCVFDS- 265 (305)
T ss_dssp EEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCS---SSCCCSEEECTTSCEE-ECCSSE-EEEECT-
T ss_pred ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECC---CCCCCeEEECCCCCEE-EecCCc-EEEECC-
Confidence 89999999988777665 78999998754311 1111110 1122348899999954 444455 999997
Q ss_pred CcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEE
Q 010470 471 KADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCV 508 (510)
Q Consensus 471 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i 508 (510)
.++.+..+..+. .+.+++|+|+++.|+.++.++..++
T Consensus 266 ~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 266 DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 577776666554 5889999999988888877765554
No 212
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.64 E-value=1.1e-12 Score=120.30 Aligned_cols=235 Identities=10% Similarity=0.028 Sum_probs=168.3
Q ss_pred cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeE-eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 010470 266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH-TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC 344 (510)
Q Consensus 266 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 344 (510)
....+.+++++++|+.+++...++.|.+||.. ++... .+..+...+.++.+.+ ++.++++...++.|..||.. +..
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSS-LGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECC-CCCEEEEecCCCeEEEECCC-CCe
Confidence 34577899999999988877778999999987 65443 2233346788999987 67777776667899999987 554
Q ss_pred eeeeee---cCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEE
Q 010470 345 VNTIIF---HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLF 421 (510)
Q Consensus 345 ~~~~~~---~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~ 421 (510)
. .+.. ...+.++++.++|.++++...++.|..||.. ++............+.+++++++|+++++...++.|..|
T Consensus 95 ~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 172 (300)
T 2qc5_A 95 T-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRI 172 (300)
T ss_dssp E-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred E-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEE
Confidence 3 2322 2458899999999988888778899999987 654432222223678999999999977777667899999
Q ss_pred EcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeec-ccccCcCEEEEEEeCCCCcEEEe
Q 010470 422 DIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRT-LKEHTAPVLSCSWSGLGKPLASA 500 (510)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~ 500 (510)
|. ++.... +..... ......++++++|.++++....+.|.+|+. ++..... +..+...+.+++++++|.+.++.
T Consensus 173 ~~-~g~~~~-~~~~~~--~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 173 TN-TGKLEE-YPLPTN--AAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTE 247 (300)
T ss_dssp CT-TCCEEE-EECSST--TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred CC-CCcEEE-eeCCCC--CCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEec
Confidence 98 554433 221111 122345889999988887777888999998 4543322 33345678999999999866666
Q ss_pred eCCCeEEEcC
Q 010470 501 DKNGVVCVWT 510 (510)
Q Consensus 501 ~~dg~i~iwd 510 (510)
..++.|..||
T Consensus 248 ~~~~~i~~~~ 257 (300)
T 2qc5_A 248 WGANQIGRIT 257 (300)
T ss_dssp TTTTEEEEEC
T ss_pred cCCCeEEEEC
Confidence 5668888775
No 213
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.63 E-value=5.6e-13 Score=122.14 Aligned_cols=224 Identities=13% Similarity=0.083 Sum_probs=152.4
Q ss_pred ceeEEEEecCCCEE-EEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeee
Q 010470 269 SVLDLAITHDNRSV-IAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT 347 (510)
Q Consensus 269 ~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 347 (510)
-.-+..|+|++..| ++...++.|+.||..++.. ..+. ....+.++++++ +++++++ . ++.|.+||..++.....
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAVVL 88 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEEEE
Confidence 44678999965554 4555788999999987765 2333 456799999998 6665444 4 57899999988875443
Q ss_pred eeec-----CceeEEEEcCCCCEEEEecC-----------CCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEE
Q 010470 348 IIFH-----SNCNALAFSMDGQTIFSGHI-----------DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILT 411 (510)
Q Consensus 348 ~~~~-----~~i~~i~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 411 (510)
.... ..++.++++|+|+++++... .+.|+.+|.. ++... +.... ...+.++|+|+++.|+.
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~-~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQV-DISNGLDWSLDHKIFYY 165 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEE-SBEEEEEECTTSCEEEE
T ss_pred EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-Eeecc-ccccceEEcCCCCEEEE
Confidence 3221 23789999999997665422 2345555543 33332 22222 56789999999987654
Q ss_pred -EecCCcEEEEEc--CCceee--eEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEE
Q 010470 412 -SGRDNLHNLFDI--RSLEVC--GSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVL 486 (510)
Q Consensus 412 -~~~d~~i~i~d~--~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 486 (510)
.+.++.|.+|++ .++... ..+..... .......++++++|++.++...++.|.+||..+++.+..+..+...++
T Consensus 166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~-~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t 244 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEK-EEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTT 244 (297)
T ss_dssp EEGGGTEEEEEEECTTTCCEEEEEEEEECCG-GGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEE
T ss_pred ecCCCCcEEEEeccCCCCcccCcEEEEECCC-CCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCce
Confidence 556789999987 344432 11111110 011233488999999888887788999999988999888887777899
Q ss_pred EEEEe-CCCCcEEEee
Q 010470 487 SCSWS-GLGKPLASAD 501 (510)
Q Consensus 487 ~~~~~-~~~~~l~s~~ 501 (510)
+++|. |+++.|+.++
T Consensus 245 ~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 245 SCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EEEEESGGGCEEEEEE
T ss_pred EEEEeCCCCCEEEEEc
Confidence 99998 8887665443
No 214
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.62 E-value=1.3e-12 Score=119.74 Aligned_cols=227 Identities=12% Similarity=0.106 Sum_probs=156.1
Q ss_pred ccccceEEEEEecCC-CEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe
Q 010470 223 AHEGGCASILFEYNS-ARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV 301 (510)
Q Consensus 223 ~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 301 (510)
.+..-.-+..|++++ .++++...++.|..||..++... .+ .....+.+++++++|+++++ . ++.|.+||..+++.
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSA 85 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEE
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcE
Confidence 344456688999954 56667777899999999877652 22 34567899999999995544 4 56899999988765
Q ss_pred eEeecC----CCCceEEEEEecCCCCEEEEEeC-----------CCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEE
Q 010470 302 RHTLTG----HTDKVCAVDVSKISSRHVVSAAY-----------DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTI 366 (510)
Q Consensus 302 ~~~~~~----~~~~v~~i~~~~~~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l 366 (510)
...... ....+.++.+.| +++++++... .+.|..+|.. +...........++.++|+|+++.+
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~l 163 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIF 163 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEE
T ss_pred EEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEE
Confidence 433221 224578899998 6776665422 2345555543 4433333334557899999999876
Q ss_pred E-EecCCCcEEEEEC--CCCcee-----eeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCe
Q 010470 367 F-SGHIDGNLRLWDI--QTGKLL-----SEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNR 438 (510)
Q Consensus 367 ~-~~~~dg~i~i~d~--~~~~~~-----~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 438 (510)
+ +.+.++.|.+||+ .++... ..+.... ..+..++++++|++.++...++.|.+||..+++....+..+...
T Consensus 164 yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~-~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~ 242 (297)
T 3g4e_A 164 YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE-QIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDK 242 (297)
T ss_dssp EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG-CEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSB
T ss_pred EEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC-CCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCC
Confidence 5 5566789999987 455432 1222222 57889999999998888888889999999988888887765433
Q ss_pred eecCceeEEEc-CCCCEEEEEcC
Q 010470 439 VASNWSRSCIS-PDESYVAAGSA 460 (510)
Q Consensus 439 ~~~~~~~~~~s-~~~~~l~~~~~ 460 (510)
. .+++|. |+++.|++++.
T Consensus 243 ~----t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 243 T----TSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp E----EEEEEESGGGCEEEEEEB
T ss_pred c----eEEEEeCCCCCEEEEEcC
Confidence 3 348897 88877665553
No 215
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.61 E-value=4.9e-13 Score=123.07 Aligned_cols=238 Identities=12% Similarity=0.091 Sum_probs=162.1
Q ss_pred ceeeccccccceEEEEEecCCC-EEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEE
Q 010470 217 CKHKINAHEGGCASILFEYNSA-RLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD 295 (510)
Q Consensus 217 ~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 295 (510)
....+..+.....+..|+|+|+ +++++..++.|..|+. ++. ...+..+...+..++++++|+++++...++.|.+|+
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSD 113 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEEC
Confidence 4444555666788999999998 6677777899999998 444 344555667789999999999666655668899999
Q ss_pred cCCCCeeEeecC----CCCceEEEEEecCCCCEEEE----EeC-------------CCcEEEEECCCCeEeeeeeecCce
Q 010470 296 VNSGRVRHTLTG----HTDKVCAVDVSKISSRHVVS----AAY-------------DRTLKVWDLHKGYCVNTIIFHSNC 354 (510)
Q Consensus 296 ~~~~~~~~~~~~----~~~~v~~i~~~~~~~~~l~s----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~i 354 (510)
.. ++....... ....+.++.+.| ++.++++ |.. .+.|..||..+++..... ....+
T Consensus 114 ~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p 190 (305)
T 3dr2_A 114 AD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHP 190 (305)
T ss_dssp TT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSE
T ss_pred CC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCC
Confidence 75 554322211 123466789998 7777776 332 357888888777654444 44557
Q ss_pred eEEEEcCCCCEEEEecCC------CcEEEEECCCCcee--eeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCc
Q 010470 355 NALAFSMDGQTIFSGHID------GNLRLWDIQTGKLL--SEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL 426 (510)
Q Consensus 355 ~~i~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~ 426 (510)
+.++|+|+++.|+++... +.|.+||+..+... ..+.....+.+..++++++|++.++ +.+ .|.+|+. .+
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~-~g 267 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDS-DG 267 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSS-EEEEECT-TS
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCC-cEEEECC-CC
Confidence 899999999988776554 68999998654311 1111111245667899999995544 444 5999998 46
Q ss_pred eeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEe
Q 010470 427 EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWS 468 (510)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd 468 (510)
+....+..+.. ...++|+++++.|+.++.++ ++.++
T Consensus 268 ~~~~~~~~~~~-----~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 268 QLLGHIPTPGT-----ASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp CEEEEEECSSC-----CCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred CEEEEEECCCc-----eeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 66666654432 33488999999888888765 54444
No 216
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.60 E-value=5.9e-12 Score=116.87 Aligned_cols=221 Identities=15% Similarity=0.094 Sum_probs=150.9
Q ss_pred ceEEEEEecCCC-EEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee
Q 010470 227 GCASILFEYNSA-RLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL 305 (510)
Q Consensus 227 ~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 305 (510)
-..+..|+|++. +++++..++.|..||..++.... + .....+.+++|+|+|+++++. .+ .|.+||..+++.....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~-~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-H-ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA 125 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-E-ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-E-ECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence 356788999754 56666678899999998776432 2 234678999999999877654 44 5999999888754332
Q ss_pred cC----CCCceEEEEEecCCCCEEEEEeC------CCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEE-ecCCCc
Q 010470 306 TG----HTDKVCAVDVSKISSRHVVSAAY------DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFS-GHIDGN 374 (510)
Q Consensus 306 ~~----~~~~v~~i~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~-~~~dg~ 374 (510)
.. ....+.++.++| +++++++... .+.|..+| ++............+.++|+|+|+.++. .+.++.
T Consensus 126 ~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp CSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred eCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 21 124588999998 6666655432 25677777 5654433333345789999999987654 456789
Q ss_pred EEEEECC--CC-ce-----eeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeE
Q 010470 375 LRLWDIQ--TG-KL-----LSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRS 446 (510)
Q Consensus 375 i~i~d~~--~~-~~-----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 446 (510)
|.+||+. ++ .. ...+.... ..+.+++++++|+++++...++.|.+||. +++....+..+... +.++
T Consensus 203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~-~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~----~~~~ 276 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGKAEVFIDSTGIK-GGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQ----TTCP 276 (326)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSS-SEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSB----EEEE
T ss_pred EEEEEcccccCCcccCceEEEECCCCC-CCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCC----cEEE
Confidence 9999986 55 32 12222222 56788999999998887777789999998 56666666544332 3458
Q ss_pred EEc-CCCCEEEEEcC
Q 010470 447 CIS-PDESYVAAGSA 460 (510)
Q Consensus 447 ~~s-~~~~~l~~~~~ 460 (510)
+|+ ++++.|++++.
T Consensus 277 af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 277 AFIGPDASRLLVTSA 291 (326)
T ss_dssp EEESTTSCEEEEEEB
T ss_pred EEecCCCCEEEEEec
Confidence 887 88877665543
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.59 E-value=2.9e-12 Score=118.94 Aligned_cols=221 Identities=12% Similarity=0.032 Sum_probs=147.8
Q ss_pred eeEEEEecCCCE-EEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee
Q 010470 270 VLDLAITHDNRS-VIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI 348 (510)
Q Consensus 270 v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 348 (510)
..++.|+|++.. +++...++.|..||..+++.. .+. ....+.++.+.+ +++++++. .+ .|.+||..++......
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~-dg~l~v~~-~~-gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLIAS-DD-GLFLRDTATGVLTLHA 125 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeC-CCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence 356789998554 455556789999998877543 333 346799999998 66666554 34 5999999888754332
Q ss_pred eec-----CceeEEEEcCCCCEEEEecC------CCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEE-ecCC
Q 010470 349 IFH-----SNCNALAFSMDGQTIFSGHI------DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTS-GRDN 416 (510)
Q Consensus 349 ~~~-----~~i~~i~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d~ 416 (510)
... ..+++++++|+|+++++... .+.|+.++ +++... +.... .....++|+|+|+.++.+ +.++
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~-~~~~~i~~s~dg~~lyv~~~~~~ 201 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADI-SIPNSICFSPDGTTGYFVDTKVN 201 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEE-SSEEEEEECTTSCEEEEEETTTC
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCC-cccCCeEEcCCCCEEEEEECCCC
Confidence 221 24789999999997665432 35677777 454332 22221 457889999999877555 4568
Q ss_pred cEEEEEcC--Cc-eee--eEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEe
Q 010470 417 LHNLFDIR--SL-EVC--GSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWS 491 (510)
Q Consensus 417 ~i~i~d~~--~~-~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 491 (510)
.|.+||+. ++ ... ..+..... .......++++++|.+.++...++.|.+|+. +++.+..+..+...+++++|+
T Consensus 202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~-~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~ 279 (326)
T 2ghs_A 202 RLMRVPLDARTGLPTGKAEVFIDSTG-IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFI 279 (326)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTT-SSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEE
T ss_pred EEEEEEcccccCCcccCceEEEECCC-CCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEe
Confidence 99999986 44 321 11111000 0011234889999998877766788999998 677777776666779999998
Q ss_pred -CCCCcEEEee
Q 010470 492 -GLGKPLASAD 501 (510)
Q Consensus 492 -~~~~~l~s~~ 501 (510)
|++..|+.++
T Consensus 280 g~d~~~L~vt~ 290 (326)
T 2ghs_A 280 GPDASRLLVTS 290 (326)
T ss_dssp STTSCEEEEEE
T ss_pred cCCCCEEEEEe
Confidence 8887665443
No 218
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.59 E-value=2.1e-12 Score=122.76 Aligned_cols=258 Identities=13% Similarity=0.143 Sum_probs=176.1
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCce---
Q 010470 236 NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKV--- 312 (510)
Q Consensus 236 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v--- 312 (510)
++..+++++.++.|..+|..+|+.................. +..+++++.++.|..+|..+|+.+..+.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 45678888899999999999998876654432222222232 4578888999999999999999888776432211
Q ss_pred --EEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCce--------eEEEEcC--CCCEEEEecCCCcEEEEEC
Q 010470 313 --CAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNC--------NALAFSM--DGQTIFSGHIDGNLRLWDI 380 (510)
Q Consensus 313 --~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i--------~~i~~~~--~~~~l~~~~~dg~i~i~d~ 380 (510)
..... .+..++.++.++.+..+|..+|+.+.......+. ..+...| .+..+++++.+|.+..+|.
T Consensus 180 ~~~~~~~---~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~ 256 (376)
T 3q7m_A 180 GESAPTT---AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDL 256 (376)
T ss_dssp CCCCCEE---ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEET
T ss_pred CCCCcEE---ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEEC
Confidence 11222 2456788888999999999999988776543210 0011111 3567788888999999999
Q ss_pred CCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC
Q 010470 381 QTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA 460 (510)
Q Consensus 381 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 460 (510)
.+++.+...... ....+.. ++..+++++.++.+..+|..+++.............. ...+ .+..|++++.
T Consensus 257 ~tG~~~w~~~~~---~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~---~~~~--~~~~l~v~~~ 326 (376)
T 3q7m_A 257 RSGQIMWKRELG---SVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLT---SPVL--YNGNLVVGDS 326 (376)
T ss_dssp TTCCEEEEECCC---CEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCC---CCEE--ETTEEEEECT
T ss_pred CCCcEEeeccCC---CCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCccc---CCEE--ECCEEEEEeC
Confidence 999988776543 2344443 4678888888999999999999887666522222111 1122 3567888899
Q ss_pred CCeEEEEeCCCcceeecccccCcCEEE-EEEeCCCCcEEEeeCCCeEEEcC
Q 010470 461 DGSVYIWSISKADIVRTLKEHTAPVLS-CSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 461 dg~i~iwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+|.|+++|..+++.+.........+.+ ... .+..|+.++.+|.|+.|+
T Consensus 327 ~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 327 EGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred CCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 999999999999988776553333322 222 245788888999998875
No 219
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.59 E-value=5.2e-14 Score=131.32 Aligned_cols=173 Identities=12% Similarity=0.090 Sum_probs=135.9
Q ss_pred ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc---------cee-cccccccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470 227 GCASILFEYNSARLISGGQDKSIKLWDTNTGS---------LSS-TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV 296 (510)
Q Consensus 227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~---------~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 296 (510)
.++.+++++...++++|+.++ +.+|++.+.. ... ....+.. |+.++| |+++|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 689999999999999999885 6669865433 111 1224556 999999 89999998 8899999999
Q ss_pred CCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEE
Q 010470 297 NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLR 376 (510)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~ 376 (510)
.+.........|...+.++.+.+. .+++++.||.|.+||+.++.... ....++|++|+|+| ++.|..||+++
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~ 185 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQ 185 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSCEE
T ss_pred hhhhccCccceeecceeeEEecCC---CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCcEE
Confidence 887766667778888888877662 38888999999999999877643 34579999999999 67889999999
Q ss_pred EEECCCCce--eeee------cc--cccccEEEEEEcCCCCEEEEE
Q 010470 377 LWDIQTGKL--LSEV------AA--HSLAAVTSISLSRSGNIILTS 412 (510)
Q Consensus 377 i~d~~~~~~--~~~~------~~--~~~~~i~~i~~~~~~~~l~~~ 412 (510)
+|+...+.. ...+ .. .+...|.+|.|.+++.++++-
T Consensus 186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 999877664 4445 21 123789999999999988873
No 220
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.58 E-value=8.6e-13 Score=134.62 Aligned_cols=255 Identities=12% Similarity=0.118 Sum_probs=173.9
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCcceeccccc--c---cceeE-EEEecCCCEEEEEe------CCCeEEEEEcCCCCeeE
Q 010470 236 NSARLISGGQDKSIKLWDTNTGSLSSTLYGC--L---GSVLD-LAITHDNRSVIAAS------SSNNLYVWDVNSGRVRH 303 (510)
Q Consensus 236 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~---~~v~~-~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~ 303 (510)
++..+++++.|+.|..+|..+|+.+..+... . ..+.+ ..+ .++ .+++++ .+|.|+.||..+|+.+.
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRV-VNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEE-ECC-EEEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 3568888999999999999999987665432 1 11111 111 144 444443 36899999999999887
Q ss_pred eecCCC-------------------------------CceEEEEEecCCCCEEEEEeCCCc-------------------
Q 010470 304 TLTGHT-------------------------------DKVCAVDVSKISSRHVVSAAYDRT------------------- 333 (510)
Q Consensus 304 ~~~~~~-------------------------------~~v~~i~~~~~~~~~l~s~~~dg~------------------- 333 (510)
.+.... .....+.+.| ..+.++.++.++.
T Consensus 198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~ 276 (689)
T 1yiq_A 198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSS 276 (689)
T ss_dssp EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTE
T ss_pred EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence 765210 0112467777 6678888877763
Q ss_pred EEEEECCCCeEeeeeeec-C---------ceeEEEEcCCCC---EEEEecCCCcEEEEECCCCceeeeeccccc------
Q 010470 334 LKVWDLHKGYCVNTIIFH-S---------NCNALAFSMDGQ---TIFSGHIDGNLRLWDIQTGKLLSEVAAHSL------ 394 (510)
Q Consensus 334 i~iwd~~~~~~~~~~~~~-~---------~i~~i~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------ 394 (510)
|..||..+|+.+..+... . .+....+..+|. .++.++.+|.++++|..+|+.+........
T Consensus 277 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~ 356 (689)
T 1yiq_A 277 IVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGM 356 (689)
T ss_dssp EEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred EEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccccccccc
Confidence 999999999998887642 1 112222223565 788999999999999999998743321110
Q ss_pred --------------------------------ccEEEEEEcCCCCEEEEEec----------------------------
Q 010470 395 --------------------------------AAVTSISLSRSGNIILTSGR---------------------------- 414 (510)
Q Consensus 395 --------------------------------~~i~~i~~~~~~~~l~~~~~---------------------------- 414 (510)
..-..++|+|+..++++...
T Consensus 357 ~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 436 (689)
T 1yiq_A 357 DMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRT 436 (689)
T ss_dssp ETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEE
T ss_pred CccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccc
Confidence 00113688888888776532
Q ss_pred -----------------CCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeec
Q 010470 415 -----------------DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRT 477 (510)
Q Consensus 415 -----------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 477 (510)
+|.|..||+.+++....+..+..... ..++..+.++++|+.||.|+.||..+|+.+..
T Consensus 437 ~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~-----g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~ 511 (689)
T 1yiq_A 437 GMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNG-----GTLSTAGNLVFEGSADGRVIAYAADTGEKLWE 511 (689)
T ss_dssp CCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCC-----CEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred cccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccC-----ccceECCCEEEEECCCCcEEEEECCCCcccee
Confidence 37799999999999888766543222 24566788999999999999999999999988
Q ss_pred ccccCcC-EEEEEEeCCCCcEE
Q 010470 478 LKEHTAP-VLSCSWSGLGKPLA 498 (510)
Q Consensus 478 ~~~~~~~-v~~~~~~~~~~~l~ 498 (510)
++...+. ..-+.|..+|+..+
T Consensus 512 ~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 512 QPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp EECSSCCCSCCEEEEETTEEEE
T ss_pred eeCCCCcccCceEEEECCEEEE
Confidence 8654322 23466778887443
No 221
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.57 E-value=2.6e-13 Score=138.17 Aligned_cols=268 Identities=13% Similarity=0.169 Sum_probs=190.4
Q ss_pred CCEEEEeeCCCeEEEEeCCCCcceeccccccc-----------ceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee
Q 010470 237 SARLISGGQDKSIKLWDTNTGSLSSTLYGCLG-----------SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL 305 (510)
Q Consensus 237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 305 (510)
+..+++++.++.|.-+|..+|+.+..+..... ....+++ ++..+++++.|+.|..+|..+|+.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 55777778889999999999998776553321 0122333 4678889999999999999999999888
Q ss_pred cCC-C----CceEE-EEEecCCCCEEEEEeC------CCcEEEEECCCCeEeeeeeecCc--------------------
Q 010470 306 TGH-T----DKVCA-VDVSKISSRHVVSAAY------DRTLKVWDLHKGYCVNTIIFHSN-------------------- 353 (510)
Q Consensus 306 ~~~-~----~~v~~-i~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~-------------------- 353 (510)
..+ . ..+.+ ..+ .+..++.++. +|.|..||..+|+.+..+.....
T Consensus 155 ~~~~~~~~~~~~~~~p~v---~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV---FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred cCCcCcCcCcccccCcEE---ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence 754 1 11211 111 1345555543 68999999999998887754221
Q ss_pred -------------eeEEEEcCCCCEEEEecCCC-------------------cEEEEECCCCceeeeecccc--------
Q 010470 354 -------------CNALAFSMDGQTIFSGHIDG-------------------NLRLWDIQTGKLLSEVAAHS-------- 393 (510)
Q Consensus 354 -------------i~~i~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~-------- 393 (510)
...++++|++..+++++.++ .|..+|..+|+....+....
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~ 311 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS 311 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence 13578889899998887664 49999999999988776432
Q ss_pred cccEEEEEEcCCC---CEEEEEecCCcEEEEEcCCceeeeEeecCCCe-----------e--------------------
Q 010470 394 LAAVTSISLSRSG---NIILTSGRDNLHNLFDIRSLEVCGSLRATGNR-----------V-------------------- 439 (510)
Q Consensus 394 ~~~i~~i~~~~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----------~-------------------- 439 (510)
...+..+....+| ..+++++.+|.++++|..+++.+..+...... +
T Consensus 312 ~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G 391 (677)
T 1kb0_A 312 TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYG 391 (677)
T ss_dssp CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTC
T ss_pred CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCccc
Confidence 1223334444577 68999999999999999999987766532110 0
Q ss_pred ecCceeEEEcCCCCEEEEEcC-------------------------------------------CCeEEEEeCCCcceee
Q 010470 440 ASNWSRSCISPDESYVAAGSA-------------------------------------------DGSVYIWSISKADIVR 476 (510)
Q Consensus 440 ~~~~~~~~~s~~~~~l~~~~~-------------------------------------------dg~i~iwd~~~~~~~~ 476 (510)
...|..++++|++.++++... .|.|..||+.+++.+.
T Consensus 392 ~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W 471 (677)
T 1kb0_A 392 AHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAW 471 (677)
T ss_dssp SSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEE
T ss_pred ccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEe
Confidence 112345789999888877543 2789999999999888
Q ss_pred cccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 477 TLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 477 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
.+.. ..++.+..+...+..+++++.||.+++||
T Consensus 472 ~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 472 SVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYH 504 (677)
T ss_dssp EEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred ecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence 7763 34455556677788888899999999986
No 222
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.57 E-value=2e-13 Score=127.13 Aligned_cols=247 Identities=10% Similarity=-0.007 Sum_probs=170.5
Q ss_pred eEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe----------CCCeEEEEEcCCCCeeEeecCC-------CC
Q 010470 248 SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS----------SSNNLYVWDVNSGRVRHTLTGH-------TD 310 (510)
Q Consensus 248 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~-------~~ 310 (510)
.|.++|..+++.+.++.....+ .+.++||+++++++. .++.|.+||+.+++.+.++..+ ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8889999999999988765555 799999999999987 3689999999999999888643 13
Q ss_pred ceEEEEEecCCCCEEEEEeC--CCcEEE--EECCCCeEeeeeeecCceeEEEEcCCC-CEEEEecCCCcEEEEECCC---
Q 010470 311 KVCAVDVSKISSRHVVSAAY--DRTLKV--WDLHKGYCVNTIIFHSNCNALAFSMDG-QTIFSGHIDGNLRLWDIQT--- 382 (510)
Q Consensus 311 ~v~~i~~~~~~~~~l~s~~~--dg~i~i--wd~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~--- 382 (510)
....+.++| ++++++++.. +..+.+ +|+.+ +..+..... +.+.|+| ..+++.+.||.+.+.|+.+
T Consensus 125 ~P~~ia~Sp-DGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~ 197 (368)
T 1mda_H 125 RVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPA 197 (368)
T ss_dssp CTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred CcceEEEcC-CCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence 456789999 7777777654 467888 99876 444443322 2234544 3455667788888899876
Q ss_pred --Cceee----eecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCce--eeeEeecC------CCeeecCceeEEE
Q 010470 383 --GKLLS----EVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLE--VCGSLRAT------GNRVASNWSRSCI 448 (510)
Q Consensus 383 --~~~~~----~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~------~~~~~~~~~~~~~ 448 (510)
++... .+.... .+. . ++++..++..+. +.+.+.|+.+.. ....+... .......+..+++
T Consensus 198 ~~~~v~~~~t~~i~vg~-~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~ 271 (368)
T 1mda_H 198 AAGIVGAQCTGAQNCSS-QAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAK 271 (368)
T ss_dssp CCEECCCCSCTTSCBCS-CCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEE
T ss_pred cCCeEEEEeeeeeeCCC-Ccc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEE
Confidence 44331 111111 333 3 566666666556 999999986532 22322211 1112222223689
Q ss_pred cCCCCEEEEEcC---------CCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCc-EEEee-CCCeEEEcC
Q 010470 449 SPDESYVAAGSA---------DGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKP-LASAD-KNGVVCVWT 510 (510)
Q Consensus 449 s~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~-~dg~i~iwd 510 (510)
+|+++.++++.. ++.+.++|+.+++.+..+.... ...+++|+|||+. +++.. .++.|.++|
T Consensus 272 s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID 343 (368)
T 1mda_H 272 LKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp ETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred cCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence 999998887543 2356799999999999887544 5789999999984 56666 589999986
No 223
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.57 E-value=1.2e-13 Score=128.54 Aligned_cols=259 Identities=8% Similarity=-0.045 Sum_probs=174.5
Q ss_pred ccceeeccccccceEEEEEecCCCEEEEee----------CCCeEEEEeCCCCcceeccccc-------ccceeEEEEec
Q 010470 215 STCKHKINAHEGGCASILFEYNSARLISGG----------QDKSIKLWDTNTGSLSSTLYGC-------LGSVLDLAITH 277 (510)
Q Consensus 215 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~ 277 (510)
.+.+.++..-..+ .+.|+|||++++++. .++.|.+||+.+++.+.++... ......++++|
T Consensus 56 ~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~Sp 133 (368)
T 1mda_H 56 GVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA 133 (368)
T ss_dssp TEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT
T ss_pred CeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcC
Confidence 3455556544455 799999999998886 3688999999999998887533 13467899999
Q ss_pred CCCEEEEEeC--CCeEEE--EEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC-----CeEeee-
Q 010470 278 DNRSVIAASS--SNNLYV--WDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK-----GYCVNT- 347 (510)
Q Consensus 278 ~~~~l~~~~~--d~~i~i--wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~- 347 (510)
||++++++.. ++.|.+ +|..+ +..+.... . +.+.|.....+++.+.||.+.+.|+.+ ++....
T Consensus 134 DGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~ 206 (368)
T 1mda_H 134 SSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-C---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC 206 (368)
T ss_dssp TSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-C---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS
T ss_pred CCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-c---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEe
Confidence 9999999874 467888 88876 34443211 1 123343456667777899999999986 443311
Q ss_pred ---eeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCc--eeeeeccc------c---cccEEEEEEcCCCCEEEEEe
Q 010470 348 ---IIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK--LLSEVAAH------S---LAAVTSISLSRSGNIILTSG 413 (510)
Q Consensus 348 ---~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~------~---~~~i~~i~~~~~~~~l~~~~ 413 (510)
+.....+. . .+++..++..+. +.|.+.|..+.. .+..+... . ......+.++|+++.++++.
T Consensus 207 t~~i~vg~~P~--~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~ 282 (368)
T 1mda_H 207 TGAQNCSSQAA--Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILT 282 (368)
T ss_dssp CTTSCBCSCCE--E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred eeeeeCCCCcc--c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEe
Confidence 11112222 3 566666665555 899999986532 22222211 0 01112268999999888764
Q ss_pred c---------CCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCE-EEEEc-CCCeEEEEeCCCcceeecccccC
Q 010470 414 R---------DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESY-VAAGS-ADGSVYIWSISKADIVRTLKEHT 482 (510)
Q Consensus 414 ~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~~~~-~dg~i~iwd~~~~~~~~~~~~~~ 482 (510)
. ++.+.++|+.+.+.+..+.....+ ..++|+|||++ +++.. .++.|.++|+.+++.+.++....
T Consensus 283 ~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p-----~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~ 357 (368)
T 1mda_H 283 VEHSRSCLAAAENTSSVTASVGQTSGPISNGHDS-----DAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp EECSSCTTSCEEEEEEEESSSCCEEECCEEEEEE-----CEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS
T ss_pred ccccCcccccCCCEEEEECCCCeEEEEEECCCCc-----ceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCC
Confidence 3 235669999999988887655432 34899999984 55555 58999999999999999987654
Q ss_pred cCEEEEEEeC
Q 010470 483 APVLSCSWSG 492 (510)
Q Consensus 483 ~~v~~~~~~~ 492 (510)
. ..++++.+
T Consensus 358 ~-P~~i~~~~ 366 (368)
T 1mda_H 358 G-PESLSVQN 366 (368)
T ss_dssp C-CCEEECCC
T ss_pred C-CCEEEeec
Confidence 4 35666543
No 224
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.56 E-value=5.8e-17 Score=153.19 Aligned_cols=255 Identities=15% Similarity=0.047 Sum_probs=144.4
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCc-eE-
Q 010470 236 NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDK-VC- 313 (510)
Q Consensus 236 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~- 313 (510)
++..+++++.||.|..||..+|+.+..+.. +.+.+..+.+++..+++++.||.|+.||..+|+.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 577999999999999999999999877765 55656666677878888889999999999999877666543211 10
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccc
Q 010470 314 AVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS 393 (510)
Q Consensus 314 ~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 393 (510)
+..+. .+..+++++.++.|+.||..+|+.+..+..+.. ..++|++..+++++.+|.|+.||.++|+.+..+....
T Consensus 86 sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~ 160 (369)
T 2hz6_A 86 SPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD 160 (369)
T ss_dssp CSCC-------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred CceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence 00111 345677888899999999999998887765542 3456788899999999999999999998877665321
Q ss_pred cccEEEEEEcCCC---CEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEE----EEEcCCCeEEE
Q 010470 394 LAAVTSISLSRSG---NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV----AAGSADGSVYI 466 (510)
Q Consensus 394 ~~~i~~i~~~~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l----~~~~~dg~i~i 466 (510)
.....++++. ..+++++.+|.+..||..+++....+........ ...++++|... +.+ ++.++.
T Consensus 161 ---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~----~~~~~~dg~~~v~~~~~~--~~~l~~ 231 (369)
T 2hz6_A 161 ---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVA----FYVWQREGLRKVMHINVA--VETLRY 231 (369)
T ss_dssp ---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEE----EEECTTSSCEEECCEEEE--HHHHHH
T ss_pred ---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEE----EEEecCCceEeccceeec--ccceee
Confidence 2223334432 5677888999999999999998777664332221 23455666432 122 345677
Q ss_pred EeCCCcc----eeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 467 WSISKAD----IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 467 wd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
+|..+|+ .+..+.... .+.+.. -.+..|+.++.||.++.+
T Consensus 232 ld~~tG~~~~~~~W~~~~~~-~~~sp~--~~~g~lyv~~~~G~l~al 275 (369)
T 2hz6_A 232 LTFMSGEVGRITKWKYPFPK-ETEAKS--KLTPTLYVGKYSTSLYAS 275 (369)
T ss_dssp HHHHHHHHHHHHTSCCCCCC-HHHHHH--HSEEEECBEECSSCEECC
T ss_pred eehhcCCcccceeeeeccCc-cccccc--cccceEEEecccCCEEec
Confidence 7776666 444433211 110000 112355666666666554
No 225
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.55 E-value=2.6e-12 Score=130.86 Aligned_cols=257 Identities=11% Similarity=0.110 Sum_probs=178.3
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCcceeccccc-c----cceeEEEEecCCCEEEEEeC------CCeEEEEEcCCCCeeEe
Q 010470 236 NSARLISGGQDKSIKLWDTNTGSLSSTLYGC-L----GSVLDLAITHDNRSVIAASS------SNNLYVWDVNSGRVRHT 304 (510)
Q Consensus 236 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~----~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~ 304 (510)
++..+++++.|+.|..+|..+|+.+..+..+ . ..+.+--.. .+..+++++. ++.|+.||..+|+.+..
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 3568888899999999999999987776543 1 122211111 2345555553 68999999999998887
Q ss_pred ecCCCCc--------------------------------eEEEEEecCCCCEEEEEeCCC-------------------c
Q 010470 305 LTGHTDK--------------------------------VCAVDVSKISSRHVVSAAYDR-------------------T 333 (510)
Q Consensus 305 ~~~~~~~--------------------------------v~~i~~~~~~~~~l~s~~~dg-------------------~ 333 (510)
+...... ...+.+.| ..+.++.++.++ .
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~s 284 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLAS 284 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEE
Confidence 7542211 12467777 567777776554 5
Q ss_pred EEEEECCCCeEeeeeeecC----------ceeEEEEcCCC---CEEEEecCCCcEEEEECCCCceeeeeccccc------
Q 010470 334 LKVWDLHKGYCVNTIIFHS----------NCNALAFSMDG---QTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL------ 394 (510)
Q Consensus 334 i~iwd~~~~~~~~~~~~~~----------~i~~i~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------ 394 (510)
|..+|..+|+.+..+.... .+..+....+| ..+++++.+|.|+++|..+|+.+..+.....
T Consensus 285 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~ 364 (677)
T 1kb0_A 285 IVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGY 364 (677)
T ss_dssp EEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred EEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccccc
Confidence 9999999999988876421 12333333477 6889999999999999999998876653210
Q ss_pred ----ccE------------------------EEEEEcCCCCEEEEEecC-------------------------------
Q 010470 395 ----AAV------------------------TSISLSRSGNIILTSGRD------------------------------- 415 (510)
Q Consensus 395 ----~~i------------------------~~i~~~~~~~~l~~~~~d------------------------------- 415 (510)
.++ ..++|+|++.++++...+
T Consensus 365 d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 444 (677)
T 1kb0_A 365 DKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAK 444 (677)
T ss_dssp CTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCE
T ss_pred CCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccc
Confidence 011 156889998888775432
Q ss_pred ------------CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccC-
Q 010470 416 ------------NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHT- 482 (510)
Q Consensus 416 ------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~- 482 (510)
|.|..||+.+++....+........ ..++.++..+++++.||.+++||..+++.+..+....
T Consensus 445 ~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~-----g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~ 519 (677)
T 1kb0_A 445 FFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNG-----GTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG 519 (677)
T ss_dssp EECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCC-----CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred ccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcC-----cceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCC
Confidence 6799999999998887765432221 3456678888889999999999999999998886433
Q ss_pred cCEEEEEEeCCCCcEEE
Q 010470 483 APVLSCSWSGLGKPLAS 499 (510)
Q Consensus 483 ~~v~~~~~~~~~~~l~s 499 (510)
....-+.|.++|+.+++
T Consensus 520 ~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 520 VVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp CCSCCEEEEETTEEEEE
T ss_pred cccCCEEEEeCCEEEEE
Confidence 22233556778875443
No 226
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.55 E-value=6.6e-13 Score=136.44 Aligned_cols=240 Identities=13% Similarity=0.099 Sum_probs=154.9
Q ss_pred ccccceEEEEEecCCCEEEEe-----eCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCC--------
Q 010470 223 AHEGGCASILFEYNSARLISG-----GQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSN-------- 289 (510)
Q Consensus 223 ~h~~~v~~~~~s~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-------- 289 (510)
+|...+..++|||||++||.+ +....|++||+.+++.+... .+......++|+ ||+.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 466679999999999998843 33357999999999864431 111113578999 999999988774
Q ss_pred -----eEEEEEcCCCCe----eEeecC-CCCceEEEEEecCCCCEEEE-EeC---CCcEEEEECCCCe-EeeeeeecCc-
Q 010470 290 -----NLYVWDVNSGRV----RHTLTG-HTDKVCAVDVSKISSRHVVS-AAY---DRTLKVWDLHKGY-CVNTIIFHSN- 353 (510)
Q Consensus 290 -----~i~iwd~~~~~~----~~~~~~-~~~~v~~i~~~~~~~~~l~s-~~~---dg~i~iwd~~~~~-~~~~~~~~~~- 353 (510)
.|++|++.++.. +..... |...+.++.|+| ++.+|+. .+. ++.|.++|+.++. ....+..+..
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~ 282 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA 282 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence 499999987652 333333 445678899999 6666543 332 3589999997763 3334443333
Q ss_pred eeEEEEcCCCCEEEE-ecC---CCcEEEEECCCCce--eeeecccccccEEEEEEcCCCCEEEEEecCC---cEEEEEcC
Q 010470 354 CNALAFSMDGQTIFS-GHI---DGNLRLWDIQTGKL--LSEVAAHSLAAVTSISLSRSGNIILTSGRDN---LHNLFDIR 424 (510)
Q Consensus 354 i~~i~~~~~~~~l~~-~~~---dg~i~i~d~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---~i~i~d~~ 424 (510)
.... ++++|..|+. ... .+.|..+|+.++.. ...+..+. ..+. .|+++++.|+....++ .|.+||+.
T Consensus 283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER-QQVL--TVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC-SSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC-CCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence 3333 6666666554 333 36799999987654 23444444 3333 8899999887776544 68899987
Q ss_pred CceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC----CeEEEEeCCCcc
Q 010470 425 SLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD----GSVYIWSISKAD 473 (510)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~ 473 (510)
.+.. ..+...... .+..+.+++++..|+....+ +.|+.||+.+++
T Consensus 359 g~~~-~~l~~p~~~---~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 359 GKRV-REVALPGLG---SVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp SCEE-EEECCSSSS---EEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred CCee-EEeecCCCc---eEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 5443 333322211 12224567788776655444 789999987765
No 227
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.54 E-value=9.2e-13 Score=134.40 Aligned_cols=271 Identities=13% Similarity=0.169 Sum_probs=185.6
Q ss_pred CCEEEEeeCCCeEEEEeCCCCcceecccccccc----------e-eEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee
Q 010470 237 SARLISGGQDKSIKLWDTNTGSLSSTLYGCLGS----------V-LDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL 305 (510)
Q Consensus 237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 305 (510)
+..+++++.++.|.-+|..+|+.+..+...... + ..+.+ .+..+++++.|+.|..+|..+|+.+..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 567888888999999999999987766432210 0 11222 3667889999999999999999998877
Q ss_pred cCC--CCceEEEEEecC-CCCEEEEEe------CCCcEEEEECCCCeEeeeeeecC------------------------
Q 010470 306 TGH--TDKVCAVDVSKI-SSRHVVSAA------YDRTLKVWDLHKGYCVNTIIFHS------------------------ 352 (510)
Q Consensus 306 ~~~--~~~v~~i~~~~~-~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~------------------------ 352 (510)
... ......+...|. .+..++.++ .+|.|..||..+|+.+..+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w 227 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY 227 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence 642 111111111110 123444443 36899999999999887765210
Q ss_pred --------ceeEEEEcCCCCEEEEecCCCc-------------------EEEEECCCCceeeeecccc--------cccE
Q 010470 353 --------NCNALAFSMDGQTIFSGHIDGN-------------------LRLWDIQTGKLLSEVAAHS--------LAAV 397 (510)
Q Consensus 353 --------~i~~i~~~~~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~~~~~~~--------~~~i 397 (510)
....++++|++..+++++.++. |..||..+|+.+..+...+ ..++
T Consensus 228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~ 307 (689)
T 1yiq_A 228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHM 307 (689)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCc
Confidence 0135788898899999887764 9999999999988776421 0122
Q ss_pred EEEEEcCCCC---EEEEEecCCcEEEEEcCCceeeeEeecCCC-----------------------------------ee
Q 010470 398 TSISLSRSGN---IILTSGRDNLHNLFDIRSLEVCGSLRATGN-----------------------------------RV 439 (510)
Q Consensus 398 ~~i~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----------------------------------~~ 439 (510)
....+..+|. .++.++.+|.++++|..+++.+........ .-
T Consensus 308 ~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~G 387 (689)
T 1yiq_A 308 ILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWG 387 (689)
T ss_dssp EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTC
T ss_pred EEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCccc
Confidence 2233333565 788999999999999999988743322110 00
Q ss_pred ecCceeEEEcCCCCEEEEEcC---------------------------------------------CCeEEEEeCCCcce
Q 010470 440 ASNWSRSCISPDESYVAAGSA---------------------------------------------DGSVYIWSISKADI 474 (510)
Q Consensus 440 ~~~~~~~~~s~~~~~l~~~~~---------------------------------------------dg~i~iwd~~~~~~ 474 (510)
...|..++++|+..++++... +|.|..||+.+++.
T Consensus 388 g~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~ 467 (689)
T 1yiq_A 388 AHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQA 467 (689)
T ss_dssp SSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEE
T ss_pred ccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCe
Confidence 112445789998888877532 37899999999999
Q ss_pred eecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 475 VRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 475 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+..+..+. ++..-.++..+..+++++.||.|+.||
T Consensus 468 ~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D 502 (689)
T 1yiq_A 468 AWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYA 502 (689)
T ss_dssp EEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred EeEccCCC-CccCccceECCCEEEEECCCCcEEEEE
Confidence 88876543 334445666778899999999999986
No 228
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.53 E-value=2.6e-12 Score=119.60 Aligned_cols=269 Identities=14% Similarity=0.098 Sum_probs=178.8
Q ss_pred ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470 217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV 296 (510)
Q Consensus 217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 296 (510)
....+..+...+.++.+.++|. |+.++.+ |..||. +++....+...........+. +..+++++.++.|..+|.
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~ 124 (330)
T 3hxj_A 51 VKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINT 124 (330)
T ss_dssp EEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECT
T ss_pred EEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcC
Confidence 3444444555567777777774 5555544 888886 676655554443333444444 566888888999999998
Q ss_pred CCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcCCCCEEEEecCCCcE
Q 010470 297 NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNL 375 (510)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i 375 (510)
. ++....+..+...+.++...+ +..++.++.++.|..||.. +.....+.... .+.++.+.+++..++ ++ +.|
T Consensus 125 ~-g~~~~~~~~~~~~~~~~~~~~--~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l 197 (330)
T 3hxj_A 125 D-GTEKWRFKTKKAIYATPIVSE--DGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKV 197 (330)
T ss_dssp T-SCEEEEEECSSCCCSCCEECT--TSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSE
T ss_pred C-CCEEEEEcCCCceeeeeEEcC--CCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEE
Confidence 8 877777665555566666654 3446777778999999998 77766665543 366777777777554 44 789
Q ss_pred EEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEE
Q 010470 376 RLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 455 (510)
Q Consensus 376 ~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 455 (510)
..|| .+++....+.... ..+.++..+++|. +++++.++.+..+|. ++.....+........ .+.+.++| .|
T Consensus 198 ~~~d-~~g~~~~~~~~~~-~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~----~~~~~~~g-~l 268 (330)
T 3hxj_A 198 YAIN-PDGTEKWNFYAGY-WTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIES----SPVIGNTD-TI 268 (330)
T ss_dssp EEEC-TTSCEEEEECCSS-CCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCS----CCEECTTS-CE
T ss_pred EEEC-CCCcEEEEEccCC-cceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccc----cceEcCCC-eE
Confidence 9999 7777776666544 5677888888875 455666778888875 4555555543332222 24455555 46
Q ss_pred EEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 456 AAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 456 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
++++.+|.|..+|. +++.+..+......+.++...++|. |..++.+|.+++.
T Consensus 269 ~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 269 YFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYAL 320 (330)
T ss_dssp EEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEE
T ss_pred EEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEE
Confidence 66777888999995 6777666655555677777777775 6668889988763
No 229
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.52 E-value=5.1e-12 Score=120.02 Aligned_cols=259 Identities=12% Similarity=0.085 Sum_probs=173.7
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCcceeccccc---------ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeec
Q 010470 236 NSARLISGGQDKSIKLWDTNTGSLSSTLYGC---------LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLT 306 (510)
Q Consensus 236 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 306 (510)
.+..+++++.++.|..||..+|+.+...... ...+.+ ....++..+++++.++.|..+|..+|+.+..+.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 3568888888999999999999887655432 122222 222346678889999999999999999887776
Q ss_pred CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCce------eEEEEcCCCCEEEEecCCCcEEEEEC
Q 010470 307 GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNC------NALAFSMDGQTIFSGHIDGNLRLWDI 380 (510)
Q Consensus 307 ~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i------~~i~~~~~~~~l~~~~~dg~i~i~d~ 380 (510)
..........+ .+..++.++.++.|..+|..+|+.+..+.....+ ....+ .+..+++++.+|.|..+|.
T Consensus 131 ~~~~~~~~p~~---~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~ 205 (376)
T 3q7m_A 131 VAGEALSRPVV---SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLM 205 (376)
T ss_dssp CSSCCCSCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEET
T ss_pred CCCceEcCCEE---ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEEC
Confidence 44332222222 2457888888999999999999988877665432 22222 2456788888999999999
Q ss_pred CCCceeeeecccccccE---E---EEEEcC--CCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCC
Q 010470 381 QTGKLLSEVAAHSLAAV---T---SISLSR--SGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE 452 (510)
Q Consensus 381 ~~~~~~~~~~~~~~~~i---~---~i~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 452 (510)
.+++............. . .+...| .+..+++++.++.+..+|..+++......... . ..+ ..++
T Consensus 206 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~--~----~~~--~~~~ 277 (376)
T 3q7m_A 206 EQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS--V----NDF--IVDG 277 (376)
T ss_dssp TTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC--E----EEE--EEET
T ss_pred CCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC--C----CCc--eEEC
Confidence 99998877654321000 0 011111 35678888889999999999998876654321 1 112 2346
Q ss_pred CEEEEEcCCCeEEEEeCCCcceeecccc-cCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 453 SYVAAGSADGSVYIWSISKADIVRTLKE-HTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 453 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
..+++++.+|.|..+|..+++.+..... ....+...... +..|+.++.+|.|..||
T Consensus 278 ~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d 334 (376)
T 3q7m_A 278 NRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWIN 334 (376)
T ss_dssp TEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEE
Confidence 7788888899999999999988766542 12222223332 45788888888888764
No 230
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.52 E-value=1.6e-12 Score=125.64 Aligned_cols=217 Identities=12% Similarity=0.126 Sum_probs=157.1
Q ss_pred CCCEEEEEeC-CCeEEEEEcCCCCeeEeecCC-CCceEEEEE-e-cCCCCEEEEEe------------------CCCcEE
Q 010470 278 DNRSVIAASS-SNNLYVWDVNSGRVRHTLTGH-TDKVCAVDV-S-KISSRHVVSAA------------------YDRTLK 335 (510)
Q Consensus 278 ~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~-~~~v~~i~~-~-~~~~~~l~s~~------------------~dg~i~ 335 (510)
||+++++... ++.|.+.|+.+.++...+.-. ...+..+++ . | ++.++++++ .++.+.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceEE
Confidence 8888888775 557999999999987755422 245778887 3 6 777777774 356899
Q ss_pred EEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCC--------------------------------------cEEE
Q 010470 336 VWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDG--------------------------------------NLRL 377 (510)
Q Consensus 336 iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg--------------------------------------~i~i 377 (510)
++|..+.+...++........++++|+|+++++.+.+. .|.+
T Consensus 179 vID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 99999999999998877888899999999999877443 4777
Q ss_pred EECCC--Cce-eeeecccccccEEEEEEcCCCCEEEEEe-cCCcEEEEEcCCce------------eeeEeecCCCeeec
Q 010470 378 WDIQT--GKL-LSEVAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDIRSLE------------VCGSLRATGNRVAS 441 (510)
Q Consensus 378 ~d~~~--~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~~------------~~~~~~~~~~~~~~ 441 (510)
.|.++ ++. +..+... ....++.++|||+++++++ .+++|.++|+.+.+ .........
T Consensus 259 ID~~~~~~~~~~~~Ipvg--~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~----- 331 (595)
T 1fwx_A 259 VDGRKEASSLFTRYIPIA--NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL----- 331 (595)
T ss_dssp EECSGGGCCSSEEEEEEE--SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS-----
T ss_pred EeCcccCCceeEEEEecC--CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC-----
Confidence 77776 444 4444443 4677899999999877765 66899999999653 222222222
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEeCCC----------cceeecccccCcCE-----EEEEEeCCCCcEEEeeC
Q 010470 442 NWSRSCISPDESYVAAGSADGSVYIWSISK----------ADIVRTLKEHTAPV-----LSCSWSGLGKPLASADK 502 (510)
Q Consensus 442 ~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v-----~~~~~~~~~~~l~s~~~ 502 (510)
....++|+|+|...++..-|+.|.+||+.+ ...+..+..|..+- .++.++|||++|+++..
T Consensus 332 gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 332 GPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp CEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred CcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 233489999995455666799999999987 45566665554332 12245799999988654
No 231
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.51 E-value=4.4e-13 Score=125.04 Aligned_cols=171 Identities=15% Similarity=0.087 Sum_probs=131.3
Q ss_pred ceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe-----------EeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEE
Q 010470 311 KVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY-----------CVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWD 379 (510)
Q Consensus 311 ~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d 379 (510)
.+..+++++ ...++++|+.+ .+.+|++.+.. .......+. |+.++| ++++|+++ .+|.|++||
T Consensus 39 ~~nlLais~-~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISN-SKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEET-TTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcC-CCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 688899998 78889999877 46669865322 122334445 999999 99999999 889999999
Q ss_pred CCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEc
Q 010470 380 IQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGS 459 (510)
Q Consensus 380 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 459 (510)
+++.........+. .++.++.+.+. .+++++.||.+.+||+.++.... ....+++++|||+| ++.|.
T Consensus 113 v~sl~~~~~~~~~~-~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~--------~~~~Vs~v~WSpkG--~~vg~ 179 (388)
T 1xip_A 113 LEELSEFRTVTSFE-KPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ--------LAQNVTSFDVTNSQ--LAVLL 179 (388)
T ss_dssp SSSTTCEEEEEECS-SCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE--------EEESEEEEEECSSE--EEEEE
T ss_pred chhhhccCccceee-cceeeEEecCC--CEEEEECCCCEEEEEccCCcccc--------ccCCceEEEEcCCc--eEEEE
Confidence 98776555555544 56778777654 38888999999999999776542 23456779999999 67888
Q ss_pred CCCeEEEEeCCCcce--eecc------c---ccCcCEEEEEEeCCCCcEEEe
Q 010470 460 ADGSVYIWSISKADI--VRTL------K---EHTAPVLSCSWSGLGKPLASA 500 (510)
Q Consensus 460 ~dg~i~iwd~~~~~~--~~~~------~---~~~~~v~~~~~~~~~~~l~s~ 500 (510)
.||++++|+...+.. ..++ . +|...|.++.|.+++.++++-
T Consensus 180 ~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 180 KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 999999998877664 4444 2 367889999999999888763
No 232
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.49 E-value=3.2e-11 Score=112.63 Aligned_cols=226 Identities=11% Similarity=0.103 Sum_probs=154.6
Q ss_pred EEe--cCCCEEEEEe-CCCeEEEEEcCCC----CeeEeec-------CCCCceEEEEEecCCCCEEEEEeCC------Cc
Q 010470 274 AIT--HDNRSVIAAS-SSNNLYVWDVNSG----RVRHTLT-------GHTDKVCAVDVSKISSRHVVSAAYD------RT 333 (510)
Q Consensus 274 ~~~--~~~~~l~~~~-~d~~i~iwd~~~~----~~~~~~~-------~~~~~v~~i~~~~~~~~~l~s~~~d------g~ 333 (510)
.++ +++++|++.+ .++.|+++|+.+. +...++. ........+.+.| ++ +++++..+ |.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCe
Confidence 346 7888888766 6789999998755 4555552 1112456677888 56 66666555 78
Q ss_pred EEEEECCCCeEeeeeeecCc----eeEEEEcCCCCEEEEec-------------------CCCcEEEEECCCCceeeeec
Q 010470 334 LKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGH-------------------IDGNLRLWDIQTGKLLSEVA 390 (510)
Q Consensus 334 i~iwd~~~~~~~~~~~~~~~----i~~i~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~ 390 (510)
|.++|..+++.+..+..... ...+.|+|+++.+++.. .+..|.+||+.+++.+..+.
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~ 245 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT 245 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence 99999999999988874422 34588899999888874 36799999999988888777
Q ss_pred cc-ccccEEEEEE--cCCCCEEEEEec------CCcEEEEEcCCce--eeeEeecCCCe--------------eecCcee
Q 010470 391 AH-SLAAVTSISL--SRSGNIILTSGR------DNLHNLFDIRSLE--VCGSLRATGNR--------------VASNWSR 445 (510)
Q Consensus 391 ~~-~~~~i~~i~~--~~~~~~l~~~~~------d~~i~i~d~~~~~--~~~~~~~~~~~--------------~~~~~~~ 445 (510)
.. .......+.| +|+++++++++. ++.|.+|....+. ....+...... .......
T Consensus 246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~ 325 (462)
T 2ece_A 246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD 325 (462)
T ss_dssp SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence 64 2234556666 999999888774 5678776654432 11221111100 0123455
Q ss_pred EEEcCCCCEEEEEcC-CCeEEEEeCCC---cceeecccccC--------------cCEEEEEEeCCCCcEEEee
Q 010470 446 SCISPDESYVAAGSA-DGSVYIWSISK---ADIVRTLKEHT--------------APVLSCSWSGLGKPLASAD 501 (510)
Q Consensus 446 ~~~s~~~~~l~~~~~-dg~i~iwd~~~---~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~s~~ 501 (510)
+.+|+||++|+++.. .+.|.+||+.. .+.+..+.... +....++++|||++|+++.
T Consensus 326 I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 326 IDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 889999999888765 68999999863 23444433210 1357899999999988877
No 233
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.48 E-value=7.1e-13 Score=123.47 Aligned_cols=258 Identities=16% Similarity=0.119 Sum_probs=168.8
Q ss_pred EEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCC
Q 010470 229 ASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGH 308 (510)
Q Consensus 229 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 308 (510)
.+..++.+| .++.++.++.|..|| .+++...........+.++...+++. +++++.+ |..||. +++....+...
T Consensus 23 ~~~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~ 96 (330)
T 3hxj_A 23 SSPILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTK 96 (330)
T ss_dssp CCCEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-
T ss_pred cCceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECC
Confidence 344555555 567777888999999 88887766665555667777776665 4445444 888885 66655544433
Q ss_pred CCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc-eeEEEEcCCCCEEEEecCCCcEEEEECCCCceee
Q 010470 309 TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLS 387 (510)
Q Consensus 309 ~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 387 (510)
........+. +..++.++.++.|..+|.. +........... +.++...+++. +++++.++.|..||.. ++...
T Consensus 97 ~~~~~~~~~~---~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~ 170 (330)
T 3hxj_A 97 KAIVSDFTIF---EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKW 170 (330)
T ss_dssp ----CCEEEE---TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEE
T ss_pred CCcccCceEE---CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeE
Confidence 3323333332 4667788889999999998 776666654433 56677776776 5567778999999988 87776
Q ss_pred eecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEE
Q 010470 388 EVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIW 467 (510)
Q Consensus 388 ~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iw 467 (510)
.+.... ..+.++.+.+++.+++.+ +.+..|| .+++....+...... +..+.++++|.+ ++++.++.|..+
T Consensus 171 ~~~~~~-~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~----~~~~~~~~~g~l-~v~t~~~gl~~~ 240 (330)
T 3hxj_A 171 RFKTND-AITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWT----VTRPAISEDGTI-YVTSLDGHLYAI 240 (330)
T ss_dssp EEECSS-CCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCC----CSCCEECTTSCE-EEEETTTEEEEE
T ss_pred EEecCC-CceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcc----eeceEECCCCeE-EEEcCCCeEEEE
Confidence 666543 566777787888765554 7899999 676666555443322 233677777765 445667778888
Q ss_pred eCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 468 SISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 468 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+ .++..+..+......+.++.+.+++ .|..++.+|.|..||
T Consensus 241 ~-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 241 N-PDGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAIN 281 (330)
T ss_dssp C-TTSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEEC
T ss_pred C-CCCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEEC
Confidence 8 4566655554444334455665555 566777777777664
No 234
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.48 E-value=1.7e-10 Score=103.76 Aligned_cols=250 Identities=7% Similarity=-0.016 Sum_probs=158.2
Q ss_pred CEEEEeeCCCeEEEEeCCCCcce-----ecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCCCCeeEeecCCCCc
Q 010470 238 ARLISGGQDKSIKLWDTNTGSLS-----STLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRVRHTLTGHTDK 311 (510)
Q Consensus 238 ~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 311 (510)
.+|+.+.. +.|+.++++..... ..+......+.+++|++++..|+.+. .++.|..+++..+.....+......
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 34544443 47888888754321 11112234568999999777666665 5689999998766544334333356
Q ss_pred eEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecC---CCcEEEEECCCCceee
Q 010470 312 VCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHI---DGNLRLWDIQTGKLLS 387 (510)
Q Consensus 312 v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~ 387 (510)
..++++.+.++.++++....+.|.++++............ ..+..++++|++..|+.+.. .+.|..+++.. ....
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~ 159 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRR 159 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcE
Confidence 7899999844555666666789999998643322222222 45889999997665554443 46898888753 3333
Q ss_pred eecccccccEEEEEEcCCCCEEEEE-ecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEE
Q 010470 388 EVAAHSLAAVTSISLSRSGNIILTS-GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYI 466 (510)
Q Consensus 388 ~~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~i 466 (510)
.+..........++++|++..|+.+ ...+.|.++|+........+.....+ ..+++. ++.++++...++.|.+
T Consensus 160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P-----~gi~~d-~~~lyva~~~~~~v~~ 233 (267)
T 1npe_A 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYP-----FAVTSY-GKNLYYTDWKTNSVIA 233 (267)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSE-----EEEEEE-TTEEEEEETTTTEEEE
T ss_pred EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCc-----eEEEEe-CCEEEEEECCCCeEEE
Confidence 3322222568999999987766554 45679999999765443333322222 224443 3444555556789999
Q ss_pred EeCCCcceeecccccC-cCEEEEEEeCCCC
Q 010470 467 WSISKADIVRTLKEHT-APVLSCSWSGLGK 495 (510)
Q Consensus 467 wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~ 495 (510)
+|..+++.+..+.... ....++++.|++-
T Consensus 234 ~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 234 MDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EeCCCCCceEEEccccccccceeeecCccC
Confidence 9999998888876433 2467888888764
No 235
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.44 E-value=1.2e-10 Score=108.86 Aligned_cols=223 Identities=17% Similarity=0.156 Sum_probs=152.7
Q ss_pred cCCCEEE-EeeCCCeEEEEeCCCC----cceeccc-------ccccceeEEEEecCCCEEEEEeCC------CeEEEEEc
Q 010470 235 YNSARLI-SGGQDKSIKLWDTNTG----SLSSTLY-------GCLGSVLDLAITHDNRSVIAASSS------NNLYVWDV 296 (510)
Q Consensus 235 ~~~~~l~-s~~~dg~i~iwd~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~ 296 (510)
+++++|+ +|..+++|.|+|+.+. +...++. ........+..+|+| .++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 7787765 4666889999999755 4444442 112245667889999 77766555 78999999
Q ss_pred CCCCeeEeecCCCC---ceEEEEEecCCCCEEEEEe-------------------CCCcEEEEECCCCeEeeeeeec---
Q 010470 297 NSGRVRHTLTGHTD---KVCAVDVSKISSRHVVSAA-------------------YDRTLKVWDLHKGYCVNTIIFH--- 351 (510)
Q Consensus 297 ~~~~~~~~~~~~~~---~v~~i~~~~~~~~~l~s~~-------------------~dg~i~iwd~~~~~~~~~~~~~--- 351 (510)
.+++.+..+..... .-..+.|+| +.+.+++.. .+..|.+||+.+++.+.++...
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g 250 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN 250 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred CCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence 99999988863322 234577888 777777774 3689999999999888888775
Q ss_pred CceeEEEE--cCCCCEEEEec------CCCcEEEEECCCCce--eeee--ccc---------------ccccEEEEEEcC
Q 010470 352 SNCNALAF--SMDGQTIFSGH------IDGNLRLWDIQTGKL--LSEV--AAH---------------SLAAVTSISLSR 404 (510)
Q Consensus 352 ~~i~~i~~--~~~~~~l~~~~------~dg~i~i~d~~~~~~--~~~~--~~~---------------~~~~i~~i~~~~ 404 (510)
.....+.| +|+++++++++ .+++|.+|....+.. ...+ ... ....+..|.++|
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~ 330 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL 330 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence 23555655 99999988776 456887766544321 1111 110 014578899999
Q ss_pred CCCEEEEEec-CCcEEEEEcC---CceeeeEeecCCC----------eeecCceeEEEcCCCCEEEEEc
Q 010470 405 SGNIILTSGR-DNLHNLFDIR---SLEVCGSLRATGN----------RVASNWSRSCISPDESYVAAGS 459 (510)
Q Consensus 405 ~~~~l~~~~~-d~~i~i~d~~---~~~~~~~~~~~~~----------~~~~~~~~~~~s~~~~~l~~~~ 459 (510)
||++|+++.. .+.|.+||+. +.+.+..+...+. ........+.++|||++|+++.
T Consensus 331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 331 DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9999988876 5799999985 3455555544311 1111234489999999999888
No 236
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.43 E-value=7.5e-14 Score=131.83 Aligned_cols=202 Identities=15% Similarity=0.175 Sum_probs=120.3
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc--ee
Q 010470 278 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN--CN 355 (510)
Q Consensus 278 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--i~ 355 (510)
++..+++++.||.|+.||..+|+.+..+.. +.+.+..+.. ++..+++++.||.|+.||..+|+.+..+..+.. +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 578899999999999999999999988876 4454444444 566788888999999999998887666543311 11
Q ss_pred -EEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeec
Q 010470 356 -ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRA 434 (510)
Q Consensus 356 -~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 434 (510)
+..+. .+..+++|+.+|.|+.||..+|+.+..+..+. ...++|++..+++++.++.|+.||..+++....+..
T Consensus 85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 158 (369)
T 2hz6_A 85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATY 158 (369)
T ss_dssp TCSCC------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCCEEEE
T ss_pred cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEec
Confidence 11111 35567888889999999999999887776543 234567888999999999999999999887666543
Q ss_pred CCCeeecCceeEEEcCCC---CEEEEEcCCCeEEEEeCCCcceeecccccCcCEEE-EEEeCCCC
Q 010470 435 TGNRVASNWSRSCISPDE---SYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS-CSWSGLGK 495 (510)
Q Consensus 435 ~~~~~~~~~~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~ 495 (510)
.. . ...+++++. ..+++++.||.|+.||..+|+.+..+.. ..++.. ..++++|.
T Consensus 159 ~~--~----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 159 FD--Y----AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGL 216 (369)
T ss_dssp EE--E----CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSC
T ss_pred cc--c----cCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCce
Confidence 21 1 112334432 5577788899999999999998877663 344443 34555553
No 237
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.41 E-value=1.6e-11 Score=126.19 Aligned_cols=233 Identities=15% Similarity=0.093 Sum_probs=148.0
Q ss_pred cccceeEEEEecCCCEEEEEeC-----CCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCC--------
Q 010470 266 CLGSVLDLAITHDNRSVIAASS-----SNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR-------- 332 (510)
Q Consensus 266 ~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg-------- 332 (510)
+...+..++|||||++|+.+.. ...|++||+.+++.+.... +......++|+ +++.|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws--Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL--GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE--TTTEEEEEESSCCC------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe--CCCEEEEEEecCcccccccc
Confidence 4557888999999998886432 2479999999998654311 11113567788 456666666553
Q ss_pred -----cEEEEECCCCeE--eeeeeec----CceeEEEEcCCCCEEEEec----CCCcEEEEECCCCc-eeeeeccccccc
Q 010470 333 -----TLKVWDLHKGYC--VNTIIFH----SNCNALAFSMDGQTIFSGH----IDGNLRLWDIQTGK-LLSEVAAHSLAA 396 (510)
Q Consensus 333 -----~i~iwd~~~~~~--~~~~~~~----~~i~~i~~~~~~~~l~~~~----~dg~i~i~d~~~~~-~~~~~~~~~~~~ 396 (510)
.|++|++.++.. ...+... .....+.|+|||++|+... ....|+++|+.++. ....+..+. ..
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~-~~ 282 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL-DA 282 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS-SS
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC-Cc
Confidence 499999987643 2222222 2367899999999886433 23589999997764 344444443 33
Q ss_pred EEEEEEcCCCCEEEEEe-cC---CcEEEEEcCCcee--eeEeecCCCeeecCceeEEEcCCCCEEEEEcC-CC--eEEEE
Q 010470 397 VTSISLSRSGNIILTSG-RD---NLHNLFDIRSLEV--CGSLRATGNRVASNWSRSCISPDESYVAAGSA-DG--SVYIW 467 (510)
Q Consensus 397 i~~i~~~~~~~~l~~~~-~d---~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg--~i~iw 467 (510)
.... ++++|..|+..+ .+ +.|..+|+.++.. ...+..+.... +.|++++++|+.... +| .|++|
T Consensus 283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~------~~~s~~g~~lv~~~~~~g~~~l~~~ 355 (693)
T 3iuj_A 283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQV------LTVHSGSGYLFAEYMVDATARVEQF 355 (693)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC------EEEEEETTEEEEEEEETTEEEEEEE
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCE------EEEEEECCEEEEEEEECCeeEEEEE
Confidence 4443 666666655544 33 5789999987643 23333333221 268899988877655 43 68999
Q ss_pred eCCCcceeeccc-ccCcCEEEEEEeCCCCcEEEeeCC----CeEEEcC
Q 010470 468 SISKADIVRTLK-EHTAPVLSCSWSGLGKPLASADKN----GVVCVWT 510 (510)
Q Consensus 468 d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d----g~i~iwd 510 (510)
++..+. ...+. .+.+.+..+.++|++..|+....+ +.|+.||
T Consensus 356 d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d 402 (693)
T 3iuj_A 356 DYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE 402 (693)
T ss_dssp CTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred ECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence 987544 33333 244567788888898877655444 6777765
No 238
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.38 E-value=3.7e-11 Score=116.20 Aligned_cols=234 Identities=12% Similarity=0.088 Sum_probs=169.0
Q ss_pred cCCCEEEEeeC-CCeEEEEeCCCCcceecccc-cccceeEEEE-e-cCCCEEEEEe------------------CCCeEE
Q 010470 235 YNSARLISGGQ-DKSIKLWDTNTGSLSSTLYG-CLGSVLDLAI-T-HDNRSVIAAS------------------SSNNLY 292 (510)
Q Consensus 235 ~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~-~-~~~~~l~~~~------------------~d~~i~ 292 (510)
+||++++.... ++.|.+.|+.+.++...+.- ....+..+++ + |++.++++++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 38888776655 56799999999987774431 2345778888 5 9999999985 346899
Q ss_pred EEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCC--------------------------------------cE
Q 010470 293 VWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR--------------------------------------TL 334 (510)
Q Consensus 293 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg--------------------------------------~i 334 (510)
++|..+.+....+.-.. ....++++| ++.++++.+.+. .|
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEECCCCeEEEEEEeCC-CccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 99999988888776333 446677888 677777766442 47
Q ss_pred EEEECCC--CeE-eeeeeecCceeEEEEcCCCCEEEEe-cCCCcEEEEECCCCc------------eeeeecccccccEE
Q 010470 335 KVWDLHK--GYC-VNTIIFHSNCNALAFSMDGQTIFSG-HIDGNLRLWDIQTGK------------LLSEVAAHSLAAVT 398 (510)
Q Consensus 335 ~iwd~~~--~~~-~~~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~~------------~~~~~~~~~~~~i~ 398 (510)
.+.|..+ +.. +..+.....+.++.++|||++++++ ..+.+|.++|+.+.+ ....+... ....
T Consensus 257 ~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG--~gP~ 334 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG--LGPL 334 (595)
T ss_dssp EEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC--SCEE
T ss_pred EEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC--CCcc
Confidence 8888887 555 6677777788999999999987765 467899999998653 23333332 6788
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEEcCC----------ceeeeEeecCCCee-ecCceeEEEcCCCCEEEEEcC---CCeE
Q 010470 399 SISLSRSGNIILTSGRDNLHNLFDIRS----------LEVCGSLRATGNRV-ASNWSRSCISPDESYVAAGSA---DGSV 464 (510)
Q Consensus 399 ~i~~~~~~~~l~~~~~d~~i~i~d~~~----------~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~l~~~~~---dg~i 464 (510)
.++|+|+|...++...|+.|.+||+.+ .+.+..+..+..+. ...-....++|||++|++.+. |+ +
T Consensus 335 h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr-~ 413 (595)
T 1fwx_A 335 HTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDR-F 413 (595)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTS-S
T ss_pred eEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccc-c
Confidence 999999995555667889999999987 56777777665532 111112346899999998754 33 3
Q ss_pred -----------EEEeCCCcc
Q 010470 465 -----------YIWSISKAD 473 (510)
Q Consensus 465 -----------~iwd~~~~~ 473 (510)
.++|+..++
T Consensus 414 ~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 414 LNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CCCCSSCCEEEEEEECSSSS
T ss_pred ccCCCCCCCcceEEEcCCCc
Confidence 889986554
No 239
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.37 E-value=1e-11 Score=116.14 Aligned_cols=228 Identities=14% Similarity=0.051 Sum_probs=150.5
Q ss_pred ccccceEEEEEecCCCEEEEeeC-----CCeEEEEeCCCCcceecccc------cccceeEEEEecCCCEEEEE-e---C
Q 010470 223 AHEGGCASILFEYNSARLISGGQ-----DKSIKLWDTNTGSLSSTLYG------CLGSVLDLAITHDNRSVIAA-S---S 287 (510)
Q Consensus 223 ~h~~~v~~~~~s~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~-~---~ 287 (510)
+|...+.+++|+++|+++++... ++.|.+||+.+++.+..+.. +...+..+++++++..++.+ . .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 46678999999999876666543 57899999999886655432 23456899999876555444 4 5
Q ss_pred CCeEEEEEcCCCCeeEeecCCCCceE-EEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEE
Q 010470 288 SNNLYVWDVNSGRVRHTLTGHTDKVC-AVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTI 366 (510)
Q Consensus 288 d~~i~iwd~~~~~~~~~~~~~~~~v~-~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l 366 (510)
++.|.+||+.+++....+.+|..... ...+.+ ++..+.+.+.+|.+..|. ..++.++|+|+|+.|
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~-~g~~~~~~~~~g~~~~~~-------------~~~~gia~s~dg~~l 209 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVI-DGVPVQIGQPDGTVIRPH-------------LGVNGIVLDAENEWL 209 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEE-TTEECBEECTTSCEECCC-------------CCEEEEEECTTSCEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeE-CCEEEEeccCCCceecee-------------cccceeEeccCCCEE
Confidence 78999999998887777765432111 123333 455666667777776653 236789999999988
Q ss_pred EEecCCC-cEEEEECC---CCc-----eee--eecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecC
Q 010470 367 FSGHIDG-NLRLWDIQ---TGK-----LLS--EVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRAT 435 (510)
Q Consensus 367 ~~~~~dg-~i~i~d~~---~~~-----~~~--~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 435 (510)
+++...+ .++.++.. .+. ... ...... +.+..++++++|.++++...++.|.+||..+++........
T Consensus 210 y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~-g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~ 288 (343)
T 2qe8_A 210 YLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEK-PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE 288 (343)
T ss_dssp EEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEEC-CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG
T ss_pred EEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccC-CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC
Confidence 8776655 56666532 111 000 011111 35667999999999999999999999998555543332211
Q ss_pred CCeeecCceeEEEcCCCCEEEEEcCCCeEEEEe
Q 010470 436 GNRVASNWSRSCISPDESYVAAGSADGSVYIWS 468 (510)
Q Consensus 436 ~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd 468 (510)
.......++|+++|.++++.+..+.+.+|.
T Consensus 289 ---~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 289 ---KLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp ---GGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred ---ceecCCeeEECCCCcEEEEeCccccccccc
Confidence 122344588999998888877655554443
No 240
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.37 E-value=8.6e-11 Score=119.57 Aligned_cols=268 Identities=13% Similarity=0.157 Sum_probs=181.4
Q ss_pred CCEEEEeeCCCeEEEEeCCCCcceecccccccc----------e-eEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee
Q 010470 237 SARLISGGQDKSIKLWDTNTGSLSSTLYGCLGS----------V-LDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL 305 (510)
Q Consensus 237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 305 (510)
+..+++++.++.|.-+|..+|+.+..+...... + ..+++ .+..+++++.|+.|..+|..+|+.+..+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 557788888999999999999987665432210 0 12233 3567888999999999999999998877
Q ss_pred cCCC----CceEE-EEEecCCCCEEEEEeC------CCcEEEEECCCCeEeeeeeec--C--------------------
Q 010470 306 TGHT----DKVCA-VDVSKISSRHVVSAAY------DRTLKVWDLHKGYCVNTIIFH--S-------------------- 352 (510)
Q Consensus 306 ~~~~----~~v~~-i~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~--~-------------------- 352 (510)
.... ..+.+ ..+ .+..++++.. +|.|..+|..+|+.+..+... .
T Consensus 144 ~~~~~~~~~~~~~~P~v---~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 220 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRV---VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD 220 (668)
T ss_dssp ECSCTTSSCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred ccCCCCCcceecCCCEE---ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcc
Confidence 6421 11111 111 1334555543 589999999999998877531 0
Q ss_pred ----------ceeEEEEcCCCCEEEEecCCC-------------------cEEEEECCCCceeeeecccc--------cc
Q 010470 353 ----------NCNALAFSMDGQTIFSGHIDG-------------------NLRLWDIQTGKLLSEVAAHS--------LA 395 (510)
Q Consensus 353 ----------~i~~i~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~--------~~ 395 (510)
....++++|++..+++++.++ .|..+|..+|+.+..+...+ ..
T Consensus 221 ~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~ 300 (668)
T 1kv9_A 221 QYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQ 300 (668)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCC
Confidence 012468888888888887766 39999999999988876531 02
Q ss_pred cEEEEEEcCCCC---EEEEEecCCcEEEEEcCCceeeeEeecCCC------------e--------------------ee
Q 010470 396 AVTSISLSRSGN---IILTSGRDNLHNLFDIRSLEVCGSLRATGN------------R--------------------VA 440 (510)
Q Consensus 396 ~i~~i~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~------------~--------------------~~ 440 (510)
++....+..+|+ .+++++.+|.++++|..+++.+........ + -.
T Consensus 301 ~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~ 380 (668)
T 1kv9_A 301 QITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGA 380 (668)
T ss_dssp CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCS
T ss_pred CcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccc
Confidence 333333344665 688999999999999999988744332110 0 00
Q ss_pred cCceeEEEcCCCCEEEEE------------------------------------cCCCeEEEEeCCCcceeecccccCcC
Q 010470 441 SNWSRSCISPDESYVAAG------------------------------------SADGSVYIWSISKADIVRTLKEHTAP 484 (510)
Q Consensus 441 ~~~~~~~~s~~~~~l~~~------------------------------------~~dg~i~iwd~~~~~~~~~~~~~~~~ 484 (510)
..|..++++|+...+++. ..+|.|..||+.+++.+.....+. +
T Consensus 381 ~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~ 459 (668)
T 1kv9_A 381 HNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-H 459 (668)
T ss_dssp SCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-S
T ss_pred cCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-C
Confidence 123446788877766542 124889999999999887766432 3
Q ss_pred EEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 485 VLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 485 v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+....+...+.++++++.||.|+.||
T Consensus 460 ~~~~~~~t~gg~vf~g~~dg~l~a~d 485 (668)
T 1kv9_A 460 WNGGTLSTAGNLVFQGTAAGQMHAYS 485 (668)
T ss_dssp CCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred CcCceeEeCCCEEEEECCcccchhhh
Confidence 33344555677888899999999886
No 241
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.36 E-value=8.7e-10 Score=102.07 Aligned_cols=244 Identities=14% Similarity=0.086 Sum_probs=154.6
Q ss_pred cccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc--------------------ccccceeEEEEecCCCE
Q 010470 222 NAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY--------------------GCLGSVLDLAITHDNRS 281 (510)
Q Consensus 222 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------------------~~~~~v~~~~~~~~~~~ 281 (510)
.+.-....+++|+++|++++++..++.|..|+..++.... +. .....+.++++.+++..
T Consensus 15 ~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~ 93 (322)
T 2fp8_A 15 EAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ 93 (322)
T ss_dssp ECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE
T ss_pred CCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCc
Confidence 3333456788999999888888889999999987654321 11 11235788999984445
Q ss_pred EEEEeCCCeEEEEEcCCCCeeEeec----C-CCCceEEEEEecCCCCEEEEEeC-----------------CCcEEEEEC
Q 010470 282 VIAASSSNNLYVWDVNSGRVRHTLT----G-HTDKVCAVDVSKISSRHVVSAAY-----------------DRTLKVWDL 339 (510)
Q Consensus 282 l~~~~~d~~i~iwd~~~~~~~~~~~----~-~~~~v~~i~~~~~~~~~l~s~~~-----------------dg~i~iwd~ 339 (510)
|+++...+.|..+|..++.. ..+. + .......+++.+.++++.++... ++.|..||.
T Consensus 94 l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~ 172 (322)
T 2fp8_A 94 LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP 172 (322)
T ss_dssp EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeC
Confidence 66665556688888765532 2221 1 12346778887723455554322 377999998
Q ss_pred CCCeEeeeeeecCceeEEEEcCCCCEEEEe-cCCCcEEEEECCCCc--eeeeecccccccEEEEEEcCCCCEEEEEec--
Q 010470 340 HKGYCVNTIIFHSNCNALAFSMDGQTIFSG-HIDGNLRLWDIQTGK--LLSEVAAHSLAAVTSISLSRSGNIILTSGR-- 414 (510)
Q Consensus 340 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~~--~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-- 414 (510)
.++...........++.++++|+|+.|+++ +..+.|.+|++.... ....+.... + ...++++++|++.++...
T Consensus 173 ~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~-g-P~gi~~d~~G~l~va~~~~~ 250 (322)
T 2fp8_A 173 STKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP-N-PGNIKRNADGHFWVSSSEEL 250 (322)
T ss_dssp TTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECS-S-EEEEEECTTSCEEEEEEEET
T ss_pred CCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCC-C-CCCeEECCCCCEEEEecCcc
Confidence 877654433333557889999999866554 566899999987421 111222222 4 788999999997777654
Q ss_pred --------CCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC
Q 010470 415 --------DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK 471 (510)
Q Consensus 415 --------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 471 (510)
.+.|..+|.. ++.+..+.............+++ .++.++++...++.|.++++..
T Consensus 251 ~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 251 DGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred cccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 4678888874 66666665443221122333444 4666666666778899998753
No 242
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.33 E-value=5.5e-10 Score=111.23 Aligned_cols=268 Identities=11% Similarity=0.092 Sum_probs=174.8
Q ss_pred CCEEEEeeC-CCeEEEEeC-CCCcceeccccccc-c----------eeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeE
Q 010470 237 SARLISGGQ-DKSIKLWDT-NTGSLSSTLYGCLG-S----------VLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH 303 (510)
Q Consensus 237 ~~~l~s~~~-dg~i~iwd~-~~~~~~~~~~~~~~-~----------v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 303 (510)
+..+++++. ++.|.-+|. .+|+.+..+..... . ...+++ .+..+++++.|+.|..+|..+|+.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 456667777 899999999 89988766542211 0 012233 35678888899999999999999887
Q ss_pred eecCCC----CceEE-EEEecCCCCEEEEEeC------CCcEEEEECCCCeEeeeeeecCce------------------
Q 010470 304 TLTGHT----DKVCA-VDVSKISSRHVVSAAY------DRTLKVWDLHKGYCVNTIIFHSNC------------------ 354 (510)
Q Consensus 304 ~~~~~~----~~v~~-i~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~i------------------ 354 (510)
.+.... ..+.+ ..+ .+..+++++. +|.|..+|..+|+.+..+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v---~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~ 216 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFV---AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQ 216 (571)
T ss_dssp EEECCCGGGTCBCCSCCEE---ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred EecCCCCCccceeccCCEE---ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccc
Confidence 765321 01211 111 1345555554 789999999999988877543221
Q ss_pred ---------------------eEEEEcCCCCEEEEecCC----------------CcEEEEECCCCceeeeecccc----
Q 010470 355 ---------------------NALAFSMDGQTIFSGHID----------------GNLRLWDIQTGKLLSEVAAHS---- 393 (510)
Q Consensus 355 ---------------------~~i~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~~---- 393 (510)
..+++.+....++.++.+ +.|..+|..+|+.+..+....
T Consensus 217 ~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~ 296 (571)
T 2ad6_A 217 FGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEW 296 (571)
T ss_dssp SSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSS
T ss_pred cccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccc
Confidence 235666766677766532 359999999999988776431
Q ss_pred ----cccEEEEEEcCCCC---EEEEEecCCcEEEEEcCCceeeeEeecCC-------------Cee--------------
Q 010470 394 ----LAAVTSISLSRSGN---IILTSGRDNLHNLFDIRSLEVCGSLRATG-------------NRV-------------- 439 (510)
Q Consensus 394 ----~~~i~~i~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------------~~~-------------- 439 (510)
.....-+...++|+ .++.++.+|.++++|..+++.+..+.... .++
T Consensus 297 d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~ 376 (571)
T 2ad6_A 297 DFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGT 376 (571)
T ss_dssp CCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEE
T ss_pred ccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCce
Confidence 01122233334674 67788899999999999998877665332 111
Q ss_pred --------ecCceeEEEcCCCCEEEEEc-------------------------------------CCCeEEEEeCCCcce
Q 010470 440 --------ASNWSRSCISPDESYVAAGS-------------------------------------ADGSVYIWSISKADI 474 (510)
Q Consensus 440 --------~~~~~~~~~s~~~~~l~~~~-------------------------------------~dg~i~iwd~~~~~~ 474 (510)
...|..++++|+..++++.+ .+|.|..||+.+++.
T Consensus 377 ~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~ 456 (571)
T 2ad6_A 377 NICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA 456 (571)
T ss_dssp EESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE
T ss_pred EECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCE
Confidence 01234567888877777653 357899999999998
Q ss_pred eecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 475 VRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 475 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+..+... .++.+..+...+..++.++.||.|+.||
T Consensus 457 ~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 457 KWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALD 491 (571)
T ss_dssp EEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred EEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEE
Confidence 8776532 2222333333456777788999998875
No 243
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.32 E-value=4.6e-10 Score=114.20 Aligned_cols=256 Identities=13% Similarity=0.133 Sum_probs=168.3
Q ss_pred CCEEEEeeCCCeEEEEeCCCCcceecccccc----cceeE-EEEecCCCEEEEEeC------CCeEEEEEcCCCCeeEee
Q 010470 237 SARLISGGQDKSIKLWDTNTGSLSSTLYGCL----GSVLD-LAITHDNRSVIAASS------SNNLYVWDVNSGRVRHTL 305 (510)
Q Consensus 237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~v~~-~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~ 305 (510)
+..+++++.|+.|..+|..+|+.+..+.... ..+.+ ..+. + ..+++++. +|.|+.||..+|+.+..+
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-K-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-C-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 4578888899999999999999876654321 11111 1111 3 34555543 589999999999998877
Q ss_pred cCCC-------------------------------CceEEEEEecCCCCEEEEEeCCC-------------------cEE
Q 010470 306 TGHT-------------------------------DKVCAVDVSKISSRHVVSAAYDR-------------------TLK 335 (510)
Q Consensus 306 ~~~~-------------------------------~~v~~i~~~~~~~~~l~s~~~dg-------------------~i~ 335 (510)
.... .....+++.| ..+.++.++.++ .|.
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 5210 0112356777 567777777665 499
Q ss_pred EEECCCCeEeeeeeec----------CceeEEEEcCCCC---EEEEecCCCcEEEEECCCCceeeeecccc---------
Q 010470 336 VWDLHKGYCVNTIIFH----------SNCNALAFSMDGQ---TIFSGHIDGNLRLWDIQTGKLLSEVAAHS--------- 393 (510)
Q Consensus 336 iwd~~~~~~~~~~~~~----------~~i~~i~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------- 393 (510)
.+|..+|+.+..+... .++....+..+|+ .+++++.+|.++++|..+|+.+.......
T Consensus 274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~ 353 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDL 353 (668)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECT
T ss_pred EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccc
Confidence 9999999998887653 1222223334665 68899999999999999999874432211
Q ss_pred --cccE------------------------EEEEEcCCCCEEEEEe----------------------------------
Q 010470 394 --LAAV------------------------TSISLSRSGNIILTSG---------------------------------- 413 (510)
Q Consensus 394 --~~~i------------------------~~i~~~~~~~~l~~~~---------------------------------- 413 (510)
..++ ..++++|+..++++..
T Consensus 354 ~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~ 433 (668)
T 1kv9_A 354 ATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPA 433 (668)
T ss_dssp TTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCG
T ss_pred ccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCC
Confidence 0011 1267788777666421
Q ss_pred --cCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCE-EEEEE
Q 010470 414 --RDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPV-LSCSW 490 (510)
Q Consensus 414 --~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~ 490 (510)
.+|.|..||+.+++............. ..+...+.++++++.||.|++||..+++.+..+....+.. .-+.+
T Consensus 434 ~~~~g~l~A~D~~tG~~~W~~~~~~~~~~-----~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~ 508 (668)
T 1kv9_A 434 AVVSGALLAWDPVKQKAAWKVPYPTHWNG-----GTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTF 508 (668)
T ss_dssp GGCEEEEEEEETTTTEEEEEEEESSSCCC-----CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred CCccceEEEEeCCCCcEEEEccCCCCCcC-----ceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEE
Confidence 237899999999998877765433221 2345578889999999999999999999988876543211 12334
Q ss_pred eCCCC-cEEEe
Q 010470 491 SGLGK-PLASA 500 (510)
Q Consensus 491 ~~~~~-~l~s~ 500 (510)
..+|+ +++.+
T Consensus 509 ~~~G~~yva~~ 519 (668)
T 1kv9_A 509 ELAGRQYVAIM 519 (668)
T ss_dssp EETTEEEEEEE
T ss_pred EECCEEEEEEE
Confidence 45666 44444
No 244
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.32 E-value=3.5e-10 Score=99.44 Aligned_cols=200 Identities=8% Similarity=0.033 Sum_probs=142.5
Q ss_pred ceeEEEEecCCCEEEEEeC--CCeEEEEEcCCCCeeEeecCCCC-ceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEe
Q 010470 269 SVLDLAITHDNRSVIAASS--SNNLYVWDVNSGRVRHTLTGHTD-KVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV 345 (510)
Q Consensus 269 ~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 345 (510)
....+.|+|++..+++.+. ++.|.++|+.+++.+..+.-... ....+++. ++.+.++.-.++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 3578999998654444432 57999999999998888753222 22345554 3455556666899999999999999
Q ss_pred eeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccccc----ccEEEEEEcCCCCEEEEEecCCcEEEE
Q 010470 346 NTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL----AAVTSISLSRSGNIILTSGRDNLHNLF 421 (510)
Q Consensus 346 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~i~~i~~~~~~~~l~~~~~d~~i~i~ 421 (510)
.++... ......+++||..++++..++.|.++|..+.+.+..+..... ..++.+.|. +|..++....++.|.+.
T Consensus 100 ~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vI 177 (266)
T 2iwa_A 100 KNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARI 177 (266)
T ss_dssp EEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEE
Confidence 988765 222344556888777777788999999999988887764321 246778887 67555555567899999
Q ss_pred EcCCceeeeEeecCCC---------eeecCceeEEEcCCCCE-EEEEcCCCeEEEEeCCCc
Q 010470 422 DIRSLEVCGSLRATGN---------RVASNWSRSCISPDESY-VAAGSADGSVYIWSISKA 472 (510)
Q Consensus 422 d~~~~~~~~~~~~~~~---------~~~~~~~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~ 472 (510)
|..+++.+..+..... ........++++|+++. ++++...+.|++.++...
T Consensus 178 D~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 178 SAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp ETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred ECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 9999999888875311 01123356999999865 556667888999987654
No 245
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.30 E-value=1.7e-09 Score=107.51 Aligned_cols=270 Identities=11% Similarity=0.082 Sum_probs=175.9
Q ss_pred CCEEEEeeC-CCeEEEEeC-CCCcceeccccccc-----------ceeEEEEecCCCE----EEEEeCCCeEEEEEcCCC
Q 010470 237 SARLISGGQ-DKSIKLWDT-NTGSLSSTLYGCLG-----------SVLDLAITHDNRS----VIAASSSNNLYVWDVNSG 299 (510)
Q Consensus 237 ~~~l~s~~~-dg~i~iwd~-~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~----l~~~~~d~~i~iwd~~~~ 299 (510)
+..+++++. ++.|.-+|. .+|+.+..+..... ....++++|.+.. +++++.|+.|..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 456777777 889999999 89988766543211 1123556554555 888999999999999999
Q ss_pred CeeEeecCCCC----ceEE-EEEecCCCCEEEEEe------CCCcEEEEECCCCeEeeeeeecCce--------------
Q 010470 300 RVRHTLTGHTD----KVCA-VDVSKISSRHVVSAA------YDRTLKVWDLHKGYCVNTIIFHSNC-------------- 354 (510)
Q Consensus 300 ~~~~~~~~~~~----~v~~-i~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~i-------------- 354 (510)
+.+........ .+.+ ..+. + ..+++++ .+|.|..+|..+|+.+..+......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~--~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~ 218 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV--K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP 218 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE--T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred CEEEeecCCCCCccceeecCCEEE--C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence 98877653220 1211 1111 3 3455554 3799999999999998877644321
Q ss_pred -------------------------eEEEEcCCCCEEEEecCC----------------CcEEEEECCCCceeeeecccc
Q 010470 355 -------------------------NALAFSMDGQTIFSGHID----------------GNLRLWDIQTGKLLSEVAAHS 393 (510)
Q Consensus 355 -------------------------~~i~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~~ 393 (510)
..+++.+....++.++.+ +.|..+|..+|+....+...+
T Consensus 219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~ 298 (599)
T 1w6s_A 219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP 298 (599)
T ss_dssp GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCC
Confidence 135666777788877665 379999999999988776542
Q ss_pred c--------ccEEEEEEc-CCC---CEEEEEecCCcEEEEEcCCceeeeEeecCC-------------Cee---------
Q 010470 394 L--------AAVTSISLS-RSG---NIILTSGRDNLHNLFDIRSLEVCGSLRATG-------------NRV--------- 439 (510)
Q Consensus 394 ~--------~~i~~i~~~-~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------------~~~--------- 439 (510)
. ....-+... .+| ..++.++.+|.++++|..+++.+....... .++
T Consensus 299 ~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~ 378 (599)
T 1w6s_A 299 HDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRM 378 (599)
T ss_dssp TCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCT
T ss_pred CccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCC
Confidence 1 111122332 567 567788899999999999998877654221 000
Q ss_pred -------------ecCceeEEEcCCCCEEEEEc---------------------------------------CCCeEEEE
Q 010470 440 -------------ASNWSRSCISPDESYVAAGS---------------------------------------ADGSVYIW 467 (510)
Q Consensus 440 -------------~~~~~~~~~s~~~~~l~~~~---------------------------------------~dg~i~iw 467 (510)
...|..++++|+..++++.. .+|.|..|
T Consensus 379 ~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~ 458 (599)
T 1w6s_A 379 DHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAY 458 (599)
T ss_dssp TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEE
T ss_pred CCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEE
Confidence 01244567787766665431 34789999
Q ss_pred eCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 468 SISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 468 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
|+.+++.+...... .++.+-.....+..++.++.||.|+.||
T Consensus 459 D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D 500 (599)
T 1w6s_A 459 NAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARD 500 (599)
T ss_dssp CTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred ECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEE
Confidence 99999887766421 1222111223456777788899998875
No 246
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.29 E-value=8.6e-10 Score=95.55 Aligned_cols=194 Identities=12% Similarity=0.118 Sum_probs=138.1
Q ss_pred eeEeecCCCCc--eEEEEEecCCCCEEEEEeCCC--cEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEE-ecCCCcE
Q 010470 301 VRHTLTGHTDK--VCAVDVSKISSRHVVSAAYDR--TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFS-GHIDGNL 375 (510)
Q Consensus 301 ~~~~~~~~~~~--v~~i~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~-~~~dg~i 375 (510)
.+.++. |... ...+.|+ ++.++.+.+.+| .|+++|+.+++.+..+.....+....+.+++..|+. ...++.+
T Consensus 33 vv~~~p-hd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 33 IVHSYP-HDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEEE-CCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEec-CCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEE
Confidence 445553 4433 4778887 456777777766 899999999999999887766544444445555554 4468899
Q ss_pred EEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCC-eeecCceeEEEcCCCCE
Q 010470 376 RLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGN-RVASNWSRSCISPDESY 454 (510)
Q Consensus 376 ~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~ 454 (510)
.+||..+.+.+.++.....+ ..+++++..|+.+..++.|.++|..+.+....+..... .....++.+.+. +|..
T Consensus 110 ~v~D~~t~~~~~ti~~~~eG----~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~l 184 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYDGEG----WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEI 184 (262)
T ss_dssp EEEETTTCCEEEEEECSSCC----CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEECccCcEEEEEECCCCc----eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEE
Confidence 99999999999988865312 33345778888777788999999999998888765432 121223335555 6766
Q ss_pred EEEEcCCCeEEEEeCCCcceeeccccc------------CcCEEEEEEeCCCCcEEEeeC
Q 010470 455 VAAGSADGSVYIWSISKADIVRTLKEH------------TAPVLSCSWSGLGKPLASADK 502 (510)
Q Consensus 455 l~~~~~dg~i~iwd~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~s~~~ 502 (510)
.+..-.++.|.+.|..+++.+..+... ....++++|+|+++.|+..|.
T Consensus 185 yan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 185 FANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 666656889999999999987776431 235699999999887766654
No 247
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.29 E-value=1.2e-09 Score=95.98 Aligned_cols=202 Identities=9% Similarity=0.047 Sum_probs=139.4
Q ss_pred eeEeecCCCC--ceEEEEEecCCCCEEEEEeC--CCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEE-EecCCCcE
Q 010470 301 VRHTLTGHTD--KVCAVDVSKISSRHVVSAAY--DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIF-SGHIDGNL 375 (510)
Q Consensus 301 ~~~~~~~~~~--~v~~i~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~dg~i 375 (510)
.+.++. |.. ....+.|++ ++.++++.+. ++.|.++|+.+++.+..+..........+.+++..++ +...++.+
T Consensus 11 vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v 88 (266)
T 2iwa_A 11 VLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIG 88 (266)
T ss_dssp EEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEE
T ss_pred EEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEE
Confidence 455554 443 357899988 4555555443 5799999999999999887655433333333455555 45568899
Q ss_pred EEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCC-eeecCceeEEEcCCCCE
Q 010470 376 RLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGN-RVASNWSRSCISPDESY 454 (510)
Q Consensus 376 ~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~ 454 (510)
.++|..+.+.+..+.... .. ...++++|..++++..++.|.++|..+.+....+..... ........+.+. +|..
T Consensus 89 ~viD~~t~~v~~~i~~g~-~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l 164 (266)
T 2iwa_A 89 FIYDRRTLSNIKNFTHQM-KD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV 164 (266)
T ss_dssp EEEETTTTEEEEEEECCS-SS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEECCCCcEEEEEECCC-CC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE
Confidence 999999999998886541 11 233566888887777889999999999988888764432 111123346666 6766
Q ss_pred EEEEcCCCeEEEEeCCCcceeeccccc-------------CcCEEEEEEeCCCCc-EEEeeCCCeEEE
Q 010470 455 VAAGSADGSVYIWSISKADIVRTLKEH-------------TAPVLSCSWSGLGKP-LASADKNGVVCV 508 (510)
Q Consensus 455 l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~-l~s~~~dg~i~i 508 (510)
++....++.|.+.|..+++.+..+... ....++++|+|+++. ++++...+.|.+
T Consensus 165 yvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~ 232 (266)
T 2iwa_A 165 WANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE 232 (266)
T ss_dssp EEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred EEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence 665656789999999999988877531 135689999999875 555656666654
No 248
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.26 E-value=3.4e-08 Score=103.31 Aligned_cols=275 Identities=11% Similarity=0.094 Sum_probs=175.1
Q ss_pred ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccc-------cccceeEEEEecCCCEEEEEeCCCeEEEEEcC
Q 010470 225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYG-------CLGSVLDLAITHDNRSVIAASSSNNLYVWDVN 297 (510)
Q Consensus 225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 297 (510)
...|.++...++|.+. .|+.++-+.+||..+++....... ....|.++...++|.+.+ |+.+ -|.+||..
T Consensus 214 ~~~i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIW-VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTEEE-EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETT
T ss_pred CCeeEEEEEcCCCCEE-EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCC
Confidence 4568889888887644 455444488999877654322211 245799999998887555 4444 58899987
Q ss_pred CCCeeEeecC-------CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee-------ecCceeEEEEcCCC
Q 010470 298 SGRVRHTLTG-------HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII-------FHSNCNALAFSMDG 363 (510)
Q Consensus 298 ~~~~~~~~~~-------~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~i~~i~~~~~~ 363 (510)
++........ ....|.++...+ ...+..|+.++.|..|+..++....... ....|.++...++|
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~--~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g 368 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDS--QGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDK 368 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECT--TSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTS
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeC--CcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCC
Confidence 7654432211 235688888766 3457778878889999876543222111 12348889888887
Q ss_pred CEEEEecCCCcEEEEECCCCceeeeecc-------cccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCC
Q 010470 364 QTIFSGHIDGNLRLWDIQTGKLLSEVAA-------HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATG 436 (510)
Q Consensus 364 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 436 (510)
. |.+|+.++-|..||..++........ -....|.++..+++|..|.+|+.++-+.+||..+++.........
T Consensus 369 ~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~ 447 (795)
T 4a2l_A 369 N-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNS 447 (795)
T ss_dssp C-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTS
T ss_pred C-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCC
Confidence 7 45677777899999877654332211 112579999999988867777777789999998766433221111
Q ss_pred CeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeeccc------ccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 437 NRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLK------EHTAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 437 ~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
......+.++...++|.+.+... +| |.+||..+++...... .+...|.++...++|.+.+... +| |..|
T Consensus 448 ~l~~~~v~~i~~d~~g~lwigt~-~G-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~G-l~~~ 522 (795)
T 4a2l_A 448 QLVNENVYAILPDGEGNLWLGTL-SA-LVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EG-LSVF 522 (795)
T ss_dssp CCSCSCEEEEEECSSSCEEEEES-SC-EEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SC-EEEE
T ss_pred CcCCCeeEEEEECCCCCEEEEec-Cc-eeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-Cc-eEEE
Confidence 11122345577778887655444 55 9999987765433221 1245789999998887555443 44 4444
No 249
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.25 E-value=3.7e-09 Score=105.32 Aligned_cols=255 Identities=11% Similarity=0.069 Sum_probs=164.8
Q ss_pred CCEEEEeeCCCeEEEEeCCCCcceecccccc----cceeE-EEEecCCCEEEEEeC------CCeEEEEEcCCCCeeEee
Q 010470 237 SARLISGGQDKSIKLWDTNTGSLSSTLYGCL----GSVLD-LAITHDNRSVIAASS------SNNLYVWDVNSGRVRHTL 305 (510)
Q Consensus 237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~v~~-~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~ 305 (510)
+..++.++.|+.|..+|..+|+.+....... ..+.+ .... + ..+++++. ++.|+.+|..+|+.+..+
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 5578888889999999999998876543211 01211 1111 3 45666654 789999999999988876
Q ss_pred cCCCCc-------------------------------------e-EEEEEecCCCCEEEEEeCC----------------
Q 010470 306 TGHTDK-------------------------------------V-CAVDVSKISSRHVVSAAYD---------------- 331 (510)
Q Consensus 306 ~~~~~~-------------------------------------v-~~i~~~~~~~~~l~s~~~d---------------- 331 (510)
...... + ..+++.+ ....++.++.+
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~ 271 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWT 271 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcC-CCCeEEEECCCCccccCCccCCCceeE
Confidence 532111 0 1245555 44555555432
Q ss_pred CcEEEEECCCCeEeeeeeecC----------ceeEEEEcCCCC---EEEEecCCCcEEEEECCCCceeeeecccc-----
Q 010470 332 RTLKVWDLHKGYCVNTIIFHS----------NCNALAFSMDGQ---TIFSGHIDGNLRLWDIQTGKLLSEVAAHS----- 393 (510)
Q Consensus 332 g~i~iwd~~~~~~~~~~~~~~----------~i~~i~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----- 393 (510)
+.|..+|..+|+.+..+.... .+.-+...++|+ .++.++.+|.++++|..+|+.+..+....
T Consensus 272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~ 351 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF 351 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred EEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence 369999999999988876431 112222234674 57788999999999999999887654321
Q ss_pred -------cccE--------------------------EEEEEcCCCCEEEEEe---------------------------
Q 010470 394 -------LAAV--------------------------TSISLSRSGNIILTSG--------------------------- 413 (510)
Q Consensus 394 -------~~~i--------------------------~~i~~~~~~~~l~~~~--------------------------- 413 (510)
..++ ..++++|+..++++.+
T Consensus 352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 431 (571)
T 2ad6_A 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM 431 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence 0111 2457888877777654
Q ss_pred ----------cCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCc
Q 010470 414 ----------RDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTA 483 (510)
Q Consensus 414 ----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 483 (510)
.+|.+..||+.+++....+........ ..+...+..+++++.||.|+.||..+++.+..+.....
T Consensus 432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~-----~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~ 506 (571)
T 2ad6_A 432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWG-----GTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSG 506 (571)
T ss_dssp EECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCS-----BCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred ccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccc-----eeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCC
Confidence 247899999999988877764432221 12233466777799999999999999999888764321
Q ss_pred C-EEEEEEeCCCCcEEE
Q 010470 484 P-VLSCSWSGLGKPLAS 499 (510)
Q Consensus 484 ~-v~~~~~~~~~~~l~s 499 (510)
. -.-+.+..+|+.++.
T Consensus 507 ~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 507 GIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp CCSCCEEEEETTEEEEE
T ss_pred cEeeeEEEEECCEEEEE
Confidence 1 112345567774443
No 250
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.25 E-value=3e-09 Score=92.15 Aligned_cols=187 Identities=11% Similarity=0.084 Sum_probs=133.6
Q ss_pred eeEEEEecCCCEEEEEeCCC--eEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeee
Q 010470 270 VLDLAITHDNRSVIAASSSN--NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT 347 (510)
Q Consensus 270 v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 347 (510)
...+.|+ ++.++.+.+.+| .|+++|+.+++.+..+.... ......+.+.++.+.+..-.++.+.+||..+.+.+.+
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t 122 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS 122 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence 4788898 666666666655 89999999999988886433 3333222232345555555689999999999999999
Q ss_pred eeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccc----cccEEEEEEcCCCCEEEEEecCCcEEEEEc
Q 010470 348 IIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS----LAAVTSISLSRSGNIILTSGRDNLHNLFDI 423 (510)
Q Consensus 348 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~ 423 (510)
+.....-..++ +++..|+.+..++.|.++|..+.+.+..+.... ...++.+.|. +|...+....++.|.+.|.
T Consensus 123 i~~~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp 199 (262)
T 3nol_A 123 FNYDGEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDP 199 (262)
T ss_dssp EECSSCCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECT
T ss_pred EECCCCceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEEC
Confidence 98765444455 567777777667889999999999888776532 1334567776 6766655557889999999
Q ss_pred CCceeeeEeecCCC--------eeecCceeEEEcCCCCEEEEEcCC
Q 010470 424 RSLEVCGSLRATGN--------RVASNWSRSCISPDESYVAAGSAD 461 (510)
Q Consensus 424 ~~~~~~~~~~~~~~--------~~~~~~~~~~~s~~~~~l~~~~~d 461 (510)
.+++....+....- ......+.++++|+++.|++.+..
T Consensus 200 ~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 200 ETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp TTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred CCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 99999988876421 112245679999988777766643
No 251
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.23 E-value=2.7e-08 Score=89.24 Aligned_cols=221 Identities=9% Similarity=0.018 Sum_probs=140.3
Q ss_pred cceEEEEEecCCCEEE-EeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCCCCeeE
Q 010470 226 GGCASILFEYNSARLI-SGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRVRH 303 (510)
Q Consensus 226 ~~v~~~~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~ 303 (510)
..+.+++|++++..|+ +...++.|.+++...+.....+.........++++|++..++.+. ..+.|.++++.......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 4578999999765554 555578999999976544333323335678999999876666555 56799999986443322
Q ss_pred eecCCCCceEEEEEecCCCCEEEEEeC--CCcEEEEECCCCeEeeeee--ecCceeEEEEcCCCCEEE-EecCCCcEEEE
Q 010470 304 TLTGHTDKVCAVDVSKISSRHVVSAAY--DRTLKVWDLHKGYCVNTII--FHSNCNALAFSMDGQTIF-SGHIDGNLRLW 378 (510)
Q Consensus 304 ~~~~~~~~v~~i~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~-~~~~dg~i~i~ 378 (510)
...........++++|.++.++++... .+.|..+++.. .....+. ....+..++++|++..|+ +....+.|.++
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~ 194 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL 194 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEE
Confidence 222223567899999843444444433 46888888863 3222222 123588999999876655 55566889999
Q ss_pred ECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCC
Q 010470 379 DIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES 453 (510)
Q Consensus 379 d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 453 (510)
|+........+.. . ..+..+++. .+.++++...++.|.++|..+++....+.....+ ....+++.|++.
T Consensus 195 ~~~g~~~~~~~~~-~-~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~---~p~gi~~~~~~~ 263 (267)
T 1npe_A 195 NPAQPGRRKVLEG-L-QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQT---RLYGITIALSQC 263 (267)
T ss_dssp ETTEEEEEEEEEC-C-CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCC---CCCCEEEECSCC
T ss_pred ecCCCceEEEecC-C-CCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEcccccc---ccceeeecCccC
Confidence 9865443333322 1 445677765 3444455556689999999999888777543211 112267777654
No 252
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.23 E-value=4.7e-08 Score=89.57 Aligned_cols=224 Identities=12% Similarity=0.058 Sum_probs=141.9
Q ss_pred cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCC--CcEEEEECCCCeEe
Q 010470 268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD--RTLKVWDLHKGYCV 345 (510)
Q Consensus 268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~ 345 (510)
.....++|+++++++++...++.|..||... .....+. ....+.++++.+ +++++++.... ..|..+|..+++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEE
Confidence 4567899999998666666889999999764 4433333 345688999998 66665555432 24777888777654
Q ss_pred eeeeec--CceeEEEEcCCCCEEEEecCCCcEEEEECCCCce-eeee--------cccccccEEEEEEcCCCCEEEEE-e
Q 010470 346 NTIIFH--SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL-LSEV--------AAHSLAAVTSISLSRSGNIILTS-G 413 (510)
Q Consensus 346 ~~~~~~--~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~--------~~~~~~~i~~i~~~~~~~~l~~~-~ 413 (510)
...... .....++..+++..+++...+|.|+++|...+.. +... ..........+ +|++..|+++ .
T Consensus 109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~ 186 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNT 186 (306)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEET
T ss_pred EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeC
Confidence 333222 2245566666665556665688999999876531 1100 00111345556 7888766555 4
Q ss_pred cCCcEEEEEcCC-cee--eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcce--eecccccCcCEEEE
Q 010470 414 RDNLHNLFDIRS-LEV--CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADI--VRTLKEHTAPVLSC 488 (510)
Q Consensus 414 ~d~~i~i~d~~~-~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~ 488 (510)
..+.|..|++.. +.. ...+... .....++++++|+++++....+.|.+|+.. ++. +..+......++++
T Consensus 187 ~~~~I~~~~~~~~g~~~~~~~~~~~-----~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~ 260 (306)
T 2p4o_A 187 EKMLLLRIPVDSTDKPGEPEIFVEQ-----TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAV 260 (306)
T ss_dssp TTTEEEEEEBCTTSCBCCCEEEEES-----CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEE
T ss_pred CCCEEEEEEeCCCCCCCccEEEecc-----CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEE
Confidence 567999999874 321 1111111 122348899999988877778899999965 655 32344334568999
Q ss_pred EEe---CCCCcEEEeeC
Q 010470 489 SWS---GLGKPLASADK 502 (510)
Q Consensus 489 ~~~---~~~~~l~s~~~ 502 (510)
+|. |++..|+.++.
T Consensus 261 a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 261 AFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp EECCSTTTTTEEEEEEC
T ss_pred EEecccCCCCEEEEECC
Confidence 998 88777766554
No 253
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.20 E-value=5.7e-09 Score=103.80 Aligned_cols=258 Identities=11% Similarity=0.058 Sum_probs=164.6
Q ss_pred EEEecCCCE----EEEeeCCCeEEEEeCCCCcceecccccc----cceeE-EEEecCCCEEEEEe------CCCeEEEEE
Q 010470 231 ILFEYNSAR----LISGGQDKSIKLWDTNTGSLSSTLYGCL----GSVLD-LAITHDNRSVIAAS------SSNNLYVWD 295 (510)
Q Consensus 231 ~~~s~~~~~----l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~v~~-~~~~~~~~~l~~~~------~d~~i~iwd 295 (510)
++++|.+.. ++.++.|+.|..+|..+|+.+....... ..+.+ ..+. ++ .+++++ .+|.|+.+|
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D 188 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYD 188 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEE
Confidence 455444444 8888889999999999999876543221 01211 1121 44 455555 379999999
Q ss_pred cCCCCeeEeecCCCCc-------------------------------------e-EEEEEecCCCCEEEEEeCC------
Q 010470 296 VNSGRVRHTLTGHTDK-------------------------------------V-CAVDVSKISSRHVVSAAYD------ 331 (510)
Q Consensus 296 ~~~~~~~~~~~~~~~~-------------------------------------v-~~i~~~~~~~~~l~s~~~d------ 331 (510)
..+|+.+..+...... + ..+++.+ ....++.+..+
T Consensus 189 ~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~g~~~p~~~ 267 (599)
T 1w6s_A 189 VKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTGNPAPWNE 267 (599)
T ss_dssp TTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCG
T ss_pred CCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeCCCCccccC
Confidence 9999988776532211 0 1234555 45566666544
Q ss_pred ----------CcEEEEECCCCeEeeeeeecCc----------eeEEEEc-CCC---CEEEEecCCCcEEEEECCCCceee
Q 010470 332 ----------RTLKVWDLHKGYCVNTIIFHSN----------CNALAFS-MDG---QTIFSGHIDGNLRLWDIQTGKLLS 387 (510)
Q Consensus 332 ----------g~i~iwd~~~~~~~~~~~~~~~----------i~~i~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~~~ 387 (510)
+.|..+|..+|+.+..+..... +.-+... .+| ..++.++.+|.++++|..+|+.+.
T Consensus 268 ~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 268 TMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp GGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred cccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence 4899999999999887765321 1122222 467 467778999999999999999887
Q ss_pred eecccc------------cccE--------------------------EEEEEcCCCCEEEEEe----------------
Q 010470 388 EVAAHS------------LAAV--------------------------TSISLSRSGNIILTSG---------------- 413 (510)
Q Consensus 388 ~~~~~~------------~~~i--------------------------~~i~~~~~~~~l~~~~---------------- 413 (510)
...... ..++ ..++++|+..++++..
T Consensus 348 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~ 427 (599)
T 1w6s_A 348 ANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKA 427 (599)
T ss_dssp EEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCT
T ss_pred cccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccC
Confidence 654221 0111 2456777766655431
Q ss_pred -----------------------cCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470 414 -----------------------RDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS 470 (510)
Q Consensus 414 -----------------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 470 (510)
..|.+.-||+.+++.+........... -.+...+.+++.++.||.|+.||..
T Consensus 428 g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~-----g~~~tagg~vf~gt~dg~l~A~D~~ 502 (599)
T 1w6s_A 428 GQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWG-----GTMATAGDLVFYGTLDGYLKARDSD 502 (599)
T ss_dssp TSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCS-----BCEEETTTEEEEECTTSEEEEEETT
T ss_pred CcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccC-----cceEecCCEEEEECCCCeEEEEECC
Confidence 346788899999888777654321111 1123357778889999999999999
Q ss_pred CcceeecccccCcCE-EEEEEeCCCCc
Q 010470 471 KADIVRTLKEHTAPV-LSCSWSGLGKP 496 (510)
Q Consensus 471 ~~~~~~~~~~~~~~v-~~~~~~~~~~~ 496 (510)
+|+.+..++...+.+ .-+.|..+|+.
T Consensus 503 tG~~lW~~~l~~g~~~~P~~y~~~G~q 529 (599)
T 1w6s_A 503 TGDLLWKFKIPSGAIGYPMTYTHKGTQ 529 (599)
T ss_dssp TCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence 999998876433211 22455667774
No 254
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.20 E-value=1.3e-08 Score=94.22 Aligned_cols=230 Identities=10% Similarity=0.027 Sum_probs=147.2
Q ss_pred ceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeec-C------------------CCCceEEEEEecCCCCEEEEEe
Q 010470 269 SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLT-G------------------HTDKVCAVDVSKISSRHVVSAA 329 (510)
Q Consensus 269 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~------------------~~~~v~~i~~~~~~~~~l~s~~ 329 (510)
...+++|++++++++++..++.|..|+..++....... . ....+.++++.+ ....|+.+.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~-~~g~l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL-QNNQLYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET-TTTEEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcC-CCCcEEEEE
Confidence 45678999999888888889999999987655332110 0 113578899886 334555555
Q ss_pred CCCcEEEEECCCCeEeeeeee------cCceeEEEEcC-CCCEEEEecC-----------------CCcEEEEECCCCce
Q 010470 330 YDRTLKVWDLHKGYCVNTIIF------HSNCNALAFSM-DGQTIFSGHI-----------------DGNLRLWDIQTGKL 385 (510)
Q Consensus 330 ~dg~i~iwd~~~~~~~~~~~~------~~~i~~i~~~~-~~~~l~~~~~-----------------dg~i~i~d~~~~~~ 385 (510)
..+.|..+|..++.. ..+.. ...++.+++.+ +|++.++... +|.|..||..+++.
T Consensus 99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 556688999875542 22211 12478899999 9987776432 36799999876654
Q ss_pred eeeecccccccEEEEEEcCCCCEEEEE-ecCCcEEEEEcCCce--eeeEeecCCCeeecCceeEEEcCCCCEEEEEcC--
Q 010470 386 LSEVAAHSLAAVTSISLSRSGNIILTS-GRDNLHNLFDIRSLE--VCGSLRATGNRVASNWSRSCISPDESYVAAGSA-- 460 (510)
Q Consensus 386 ~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-- 460 (510)
....... .....++++|+|+.|+++ +..+.|.+|++.... ....+..... ...++++++|++.++...
T Consensus 178 ~~~~~~~--~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-----P~gi~~d~~G~l~va~~~~~ 250 (322)
T 2fp8_A 178 TLLLKEL--HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-----PGNIKRNADGHFWVSSSEEL 250 (322)
T ss_dssp EEEEEEE--SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-----EEEEEECTTSCEEEEEEEET
T ss_pred EEeccCC--ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-----CCCeEECCCCCEEEEecCcc
Confidence 3322221 456679999999866655 556899999987421 1111111111 334889999987776554
Q ss_pred --------CCeEEEEeCCCcceeeccccc----CcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 461 --------DGSVYIWSISKADIVRTLKEH----TAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 461 --------dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
.+.|..+|. .++.+..+... ...++++++ .++.++++...++.|..+
T Consensus 251 ~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~ 309 (322)
T 2fp8_A 251 DGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGIL 309 (322)
T ss_dssp TSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEE
T ss_pred cccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEE
Confidence 467888986 47666655433 234667776 356656665567777765
No 255
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.20 E-value=1.1e-08 Score=101.98 Aligned_cols=256 Identities=15% Similarity=0.138 Sum_probs=163.2
Q ss_pred CCEEEEeeCCCeEEEEeCCCCcceeccccccc----cee-EEEEecC---CC-EEEEEeC------CCeEEEEEcCCCCe
Q 010470 237 SARLISGGQDKSIKLWDTNTGSLSSTLYGCLG----SVL-DLAITHD---NR-SVIAASS------SNNLYVWDVNSGRV 301 (510)
Q Consensus 237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~v~-~~~~~~~---~~-~l~~~~~------d~~i~iwd~~~~~~ 301 (510)
+..++.++.|+.|.-+|..+|+.+........ .+. ...+..+ ++ .+++++. ++.|+.+|..+|+.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 45788888999999999999998765442210 111 1112212 33 5666543 78999999999998
Q ss_pred eEeecCCCCce-----------------------------------------EEEEEecCCCCEEEEEeC----------
Q 010470 302 RHTLTGHTDKV-----------------------------------------CAVDVSKISSRHVVSAAY---------- 330 (510)
Q Consensus 302 ~~~~~~~~~~v-----------------------------------------~~i~~~~~~~~~l~s~~~---------- 330 (510)
+.........+ ..+++.| ....++.+..
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~-~~g~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDA-ETNTIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEET-TTTEEEEEECCBSSSCGGGG
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcC-CCCEEEEeCCCCCcccCccc
Confidence 87654311000 1234555 4456665542
Q ss_pred ----------C----CcEEEEECCCCeEeeeeeecC----------ceeEEEEc-CCCC---EEEEecCCCcEEEEECCC
Q 010470 331 ----------D----RTLKVWDLHKGYCVNTIIFHS----------NCNALAFS-MDGQ---TIFSGHIDGNLRLWDIQT 382 (510)
Q Consensus 331 ----------d----g~i~iwd~~~~~~~~~~~~~~----------~i~~i~~~-~~~~---~l~~~~~dg~i~i~d~~~ 382 (510)
| +.|..+|..+|+.+..+.... .+.-+... .+|+ .++.++.+|.++++|..+
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t 355 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence 2 689999999999988875421 11112221 4674 778899999999999999
Q ss_pred Cceeeeeccccc------------ccE--------------------------------EEEEEcCCCCEEEEEe-----
Q 010470 383 GKLLSEVAAHSL------------AAV--------------------------------TSISLSRSGNIILTSG----- 413 (510)
Q Consensus 383 ~~~~~~~~~~~~------------~~i--------------------------------~~i~~~~~~~~l~~~~----- 413 (510)
|+.+..+..... .++ ..++++|+..++++..
T Consensus 356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~ 435 (582)
T 1flg_A 356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE 435 (582)
T ss_dssp CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence 998876543310 000 1346677655555533
Q ss_pred ----------------------------cCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEE
Q 010470 414 ----------------------------RDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVY 465 (510)
Q Consensus 414 ----------------------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~ 465 (510)
.+|.|.-||+.+++.............. .+...+.++++|+.||.++
T Consensus 436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g-----~~~tagglvf~g~~dg~l~ 510 (582)
T 1flg_A 436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAG-----VLATAGNLVFTGTGDGYFK 510 (582)
T ss_dssp EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSC-----CEEETTTEEEEECTTSEEE
T ss_pred eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCccc-----ceEeCCCEEEEECCCCcEE
Confidence 2578999999999988776644322211 1223467788899999999
Q ss_pred EEeCCCcceeecccccCcCE-EEEEEeCCCCcEE
Q 010470 466 IWSISKADIVRTLKEHTAPV-LSCSWSGLGKPLA 498 (510)
Q Consensus 466 iwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~ 498 (510)
.||..+|+.+..++...+.+ .-+.|..+|+..+
T Consensus 511 A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 511 AFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp EEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred EEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 99999999998886543221 1256667887433
No 256
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.20 E-value=4.3e-09 Score=91.15 Aligned_cols=182 Identities=10% Similarity=0.043 Sum_probs=132.0
Q ss_pred eeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEE--EEEecCCCCEEEEEeCCCcEEEEECCCCeEeee
Q 010470 270 VLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCA--VDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT 347 (510)
Q Consensus 270 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~--i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 347 (510)
...+.|+ ++.++++.+.+|.|+++|+.+++.+..+ -...... +++. ++.+.+..-.++.+.+||..+.+.+.+
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 4678887 4566666677889999999999988877 2233333 4443 456666666789999999999999999
Q ss_pred eeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccccc----ccEEEEEEcCCCCEEEEEecCCcEEEEEc
Q 010470 348 IIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL----AAVTSISLSRSGNIILTSGRDNLHNLFDI 423 (510)
Q Consensus 348 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~i~~i~~~~~~~~l~~~~~d~~i~i~d~ 423 (510)
+........++ +++..|+.+..++.|.++|..+.+.+..+..... ..++.+.|. +|..++....++.|.+.|.
T Consensus 132 i~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp 208 (268)
T 3nok_A 132 TRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDP 208 (268)
T ss_dssp EECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECT
T ss_pred EeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeC
Confidence 98765555555 5688888777789999999999998887765321 245667776 6765555556889999999
Q ss_pred CCceeeeEeecCC---------CeeecCceeEEEcCCCCEEEEEc
Q 010470 424 RSLEVCGSLRATG---------NRVASNWSRSCISPDESYVAAGS 459 (510)
Q Consensus 424 ~~~~~~~~~~~~~---------~~~~~~~~~~~~s~~~~~l~~~~ 459 (510)
.+++.+..+.... .......+.++++|+++.|++.+
T Consensus 209 ~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 209 ATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 9999998887541 11122456799999766555444
No 257
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.20 E-value=5.6e-09 Score=90.41 Aligned_cols=189 Identities=13% Similarity=0.142 Sum_probs=134.0
Q ss_pred ceeecccccc--ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-CCCeEEE
Q 010470 217 CKHKINAHEG--GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYV 293 (510)
Q Consensus 217 ~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i 293 (510)
.+.++ .|.. ....+.|+ ++.++++.+.+|.|+++|+.+++.+..+ -..........++++.|+... .++.+.+
T Consensus 45 Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~v~V 120 (268)
T 3nok_A 45 IIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDGERLYQLTWTEGLLFT 120 (268)
T ss_dssp EEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECSSCEEEEESSSCEEEE
T ss_pred EEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeCCEEEEEEccCCEEEE
Confidence 44444 4443 35788887 4567778888899999999999998877 233333333334455555554 6889999
Q ss_pred EEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC------ceeEEEEcCCCCEEE
Q 010470 294 WDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS------NCNALAFSMDGQTIF 367 (510)
Q Consensus 294 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~i~~i~~~~~~~~l~ 367 (510)
||..+.+.+.++..... -+.++ + ++..|+.+..++.|.++|..+.+.+..+.... .++.+.|. +|..++
T Consensus 121 ~D~~Tl~~~~ti~~~~e-GwGLt--~-Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lya 195 (268)
T 3nok_A 121 WSGMPPQRERTTRYSGE-GWGLC--Y-WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYA 195 (268)
T ss_dssp EETTTTEEEEEEECSSC-CCCEE--E-ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred EECCcCcEEEEEeCCCc-eeEEe--c-CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEE
Confidence 99999999988875332 24444 3 45566666668999999999999888876542 35677776 776665
Q ss_pred EecCCCcEEEEECCCCceeeeeccc------------ccccEEEEEEcCCCCEEEEEec
Q 010470 368 SGHIDGNLRLWDIQTGKLLSEVAAH------------SLAAVTSISLSRSGNIILTSGR 414 (510)
Q Consensus 368 ~~~~dg~i~i~d~~~~~~~~~~~~~------------~~~~i~~i~~~~~~~~l~~~~~ 414 (510)
....+..|.+.|..+++.+..+... .....+.|+++|+++.|++.+.
T Consensus 196 nvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 196 NIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 5656789999999999988877643 1136789999998776666554
No 258
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.19 E-value=1.8e-07 Score=97.75 Aligned_cols=269 Identities=11% Similarity=0.102 Sum_probs=172.9
Q ss_pred ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc------ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 010470 225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY------GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS 298 (510)
Q Consensus 225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 298 (510)
...|.++..+++|. |..|+.++-|..|+..++....... -....|.++...++|. |.+|+.++-|..|+..+
T Consensus 309 ~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~ 386 (795)
T 4a2l_A 309 QRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPIT 386 (795)
T ss_dssp SSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTT
T ss_pred CCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCC
Confidence 35699999998885 5667777778899876544321111 1245689999988887 55577777799999877
Q ss_pred CCeeEeecC--------CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee-----ecCceeEEEEcCCCCE
Q 010470 299 GRVRHTLTG--------HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII-----FHSNCNALAFSMDGQT 365 (510)
Q Consensus 299 ~~~~~~~~~--------~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~i~~i~~~~~~~~ 365 (510)
+........ ....|.++...+ ++..|..|+.++.|..||..+++...... ....|.++...++|.+
T Consensus 387 ~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l 465 (795)
T 4a2l_A 387 QRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNL 465 (795)
T ss_dssp CCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCE
T ss_pred CcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCE
Confidence 765433211 235788888876 55547778877889999998776443321 1245888988888875
Q ss_pred EEEecCCCcEEEEECCCCceeeeecc-----cccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeec---CCC
Q 010470 366 IFSGHIDGNLRLWDIQTGKLLSEVAA-----HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRA---TGN 437 (510)
Q Consensus 366 l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~ 437 (510)
.+. +. +.+.+||..+++....... .....|.++..+++|.+.+.+. +.+..||..+... .+.. ...
T Consensus 466 wig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~~ 539 (795)
T 4a2l_A 466 WLG-TL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVSN 539 (795)
T ss_dssp EEE-ES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSCG
T ss_pred EEE-ec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCCC
Confidence 554 44 4589999877654332211 1125789999999988766554 5588899877655 2221 111
Q ss_pred eeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeec--ccc-cCcCEEEEEEeCCCCcEEEeeCCCe
Q 010470 438 RVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRT--LKE-HTAPVLSCSWSGLGKPLASADKNGV 505 (510)
Q Consensus 438 ~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~-~~~~v~~~~~~~~~~~l~s~~~dg~ 505 (510)
.....+.++..+++|.+.++.. .| |..||..+++.... ..+ ....|.++...++|.+.+++ ..|.
T Consensus 540 l~~~~i~~i~~d~~g~lWigT~-~G-l~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~~Gl 607 (795)
T 4a2l_A 540 VTKLFTNCIYEASNGIIWVGTR-EG-FYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST-NRGI 607 (795)
T ss_dssp GGGSCEEEEEECTTSCEEEEES-SC-EEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE-TTEE
T ss_pred CCCCeeEEEEECCCCCEEEEeC-CC-ceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc-CCce
Confidence 1222455677788888665444 45 88999776644321 112 24568889998888755544 4443
No 259
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.18 E-value=1.3e-08 Score=87.55 Aligned_cols=194 Identities=10% Similarity=0.027 Sum_probs=136.1
Q ss_pred eeEeecCCC--CceEEEEEecCCCCEEEEEeCCC--cEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEE-EecCCCcE
Q 010470 301 VRHTLTGHT--DKVCAVDVSKISSRHVVSAAYDR--TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIF-SGHIDGNL 375 (510)
Q Consensus 301 ~~~~~~~~~--~~v~~i~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~dg~i 375 (510)
.+.++. |. .....+.|++ +.++.+.+.+| .|+.+|+.+++.+..+.....+....+.+.+..|+ ....++.+
T Consensus 11 v~~~~p-hd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v 87 (243)
T 3mbr_X 11 VVKRYP-HDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEG 87 (243)
T ss_dssp EEEEEE-CCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEcC-CCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEE
Confidence 444553 54 3466888875 56666666654 89999999999999988776654444444455555 45578899
Q ss_pred EEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeee-cCceeEEEcCCCCE
Q 010470 376 RLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVA-SNWSRSCISPDESY 454 (510)
Q Consensus 376 ~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~ 454 (510)
.+||..+.+.+.++.... . -..++ +++..|+++..++.|.++|..+.+....+........ ...+.+.+. +|..
T Consensus 88 ~v~D~~tl~~~~ti~~~~-~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~l 162 (243)
T 3mbr_X 88 FVYDLATLTPRARFRYPG-E-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGEL 162 (243)
T ss_dssp EEEETTTTEEEEEEECSS-C-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEECCcCcEEEEEeCCC-C-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEE
Confidence 999999999999988754 2 23343 5677777777789999999999998888765432221 222334443 6766
Q ss_pred EEEEcCCCeEEEEeCCCcceeeccccc-------------CcCEEEEEEeCCCCcEEEeeC
Q 010470 455 VAAGSADGSVYIWSISKADIVRTLKEH-------------TAPVLSCSWSGLGKPLASADK 502 (510)
Q Consensus 455 l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~s~~~ 502 (510)
++....+..|.+.|..+++.+..+... ....++++|+|+++.|+..|.
T Consensus 163 yanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 163 LANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 666656789999999999987766421 235689999998886666554
No 260
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=99.18 E-value=8.3e-08 Score=89.44 Aligned_cols=246 Identities=9% Similarity=0.021 Sum_probs=154.2
Q ss_pred ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCCCCeeE
Q 010470 225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRVRH 303 (510)
Q Consensus 225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~ 303 (510)
....+|.+..+++ +|+.+. ...|+..++........+. ....+..++|++.+..|+.+. ..+.|..+++..+....
T Consensus 33 ~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~ 109 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE 109 (349)
T ss_dssp TTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CCCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE
Confidence 3445677766644 444333 3458888887554433333 344578999998777666665 67889999988665444
Q ss_pred eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee-cCceeEEEEcCCCCEEE-EecCC-CcEEEEEC
Q 010470 304 TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF-HSNCNALAFSMDGQTIF-SGHID-GNLRLWDI 380 (510)
Q Consensus 304 ~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~-~~~~d-g~i~i~d~ 380 (510)
.+........++++.+.+++++++-...+.|.++++........+.. ...+..++++|.+..|+ +.... +.|..+++
T Consensus 110 ~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~ 189 (349)
T 3v64_C 110 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 189 (349)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence 44433345678888875666667767778999999875432222222 24589999999655544 54455 78999997
Q ss_pred CCCceeeeecccccccEEEEEEcCCCCEEEEE-ecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEc
Q 010470 381 QTGKLLSEVAAHSLAAVTSISLSRSGNIILTS-GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGS 459 (510)
Q Consensus 381 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 459 (510)
.. .....+..........++++|++..|+.+ ...+.|..+|+........+.... .....+++ ..+.++++..
T Consensus 190 dG-~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~----~~P~giav-~~~~ly~td~ 263 (349)
T 3v64_C 190 DG-SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGL----PHPFAITV-FEDSLYWTDW 263 (349)
T ss_dssp TS-CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC----SSEEEEEE-ETTEEEEEET
T ss_pred CC-CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCC----CCceEEEE-ECCEEEEecC
Confidence 54 33333333333578999999876655554 456789999987543322222211 11223666 4566666777
Q ss_pred CCCeEEEEeCCCcceeeccc
Q 010470 460 ADGSVYIWSISKADIVRTLK 479 (510)
Q Consensus 460 ~dg~i~iwd~~~~~~~~~~~ 479 (510)
..+.|..++..+|+....+.
T Consensus 264 ~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 264 HTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TTTEEEEEETTTCCSCEEEE
T ss_pred CCCeEEEEEccCCCccEEec
Confidence 78889999866666554443
No 261
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.17 E-value=1.3e-08 Score=101.33 Aligned_cols=271 Identities=15% Similarity=0.144 Sum_probs=170.5
Q ss_pred CCEEEEeeCCCeEEEEeCCCCcceecccccccc---------eeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecC
Q 010470 237 SARLISGGQDKSIKLWDTNTGSLSSTLYGCLGS---------VLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTG 307 (510)
Q Consensus 237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 307 (510)
+..+++++.++.|.-+|..+|+.+..+...... ...+++ .+..+++++.++.|..+|..+|+.+..+..
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 345666666445999999999887665433211 012223 356788889999999999999998877653
Q ss_pred CCC----ceE-EEEEecC--CCC-EEEEEe------CCCcEEEEECCCCeEeeeeeecCc--------------------
Q 010470 308 HTD----KVC-AVDVSKI--SSR-HVVSAA------YDRTLKVWDLHKGYCVNTIIFHSN-------------------- 353 (510)
Q Consensus 308 ~~~----~v~-~i~~~~~--~~~-~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~-------------------- 353 (510)
... .+. ...+... ++. .+++++ .+|.|..+|..+|+.+........
T Consensus 146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~ 225 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccccc
Confidence 321 111 1111111 122 566654 378999999999998876543210
Q ss_pred ----------------------eeEEEEcCCCCEEEEecC--------------------C----CcEEEEECCCCceee
Q 010470 354 ----------------------CNALAFSMDGQTIFSGHI--------------------D----GNLRLWDIQTGKLLS 387 (510)
Q Consensus 354 ----------------------i~~i~~~~~~~~l~~~~~--------------------d----g~i~i~d~~~~~~~~ 387 (510)
-..++++|....+++++. | +.|..+|..+|+...
T Consensus 226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W 305 (582)
T 1flg_A 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEE
Confidence 023566677777776553 2 589999999999998
Q ss_pred eeccccc--------ccEEEEEEc-CCCC---EEEEEecCCcEEEEEcCCceeeeEeecCCC-------------ee---
Q 010470 388 EVAAHSL--------AAVTSISLS-RSGN---IILTSGRDNLHNLFDIRSLEVCGSLRATGN-------------RV--- 439 (510)
Q Consensus 388 ~~~~~~~--------~~i~~i~~~-~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-------------~~--- 439 (510)
.+...+. ....-+... .+|+ .++.++.+|.++++|..+++.+..+..... ++
T Consensus 306 ~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~ 385 (582)
T 1flg_A 306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVERE 385 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECT
T ss_pred EEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEcc
Confidence 8754210 111112222 4674 788899999999999999988766554320 00
Q ss_pred -------------------------ecCceeEEEcCCCCEEEEEc---------------------------------CC
Q 010470 440 -------------------------ASNWSRSCISPDESYVAAGS---------------------------------AD 461 (510)
Q Consensus 440 -------------------------~~~~~~~~~s~~~~~l~~~~---------------------------------~d 461 (510)
...|..++++|+...+++.. .+
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~ 465 (582)
T 1flg_A 386 GQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHV 465 (582)
T ss_dssp TCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCS
T ss_pred ccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCc
Confidence 00133467777666555432 25
Q ss_pred CeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 462 GSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 462 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
|.|..||+.+++.+.....+. ++.+-.....+..++.++.||.++.||
T Consensus 466 G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D 513 (582)
T 1flg_A 466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFD 513 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred ceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEE
Confidence 889999999999887765332 222212222456777889999998875
No 262
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.16 E-value=4.2e-09 Score=107.41 Aligned_cols=271 Identities=10% Similarity=0.071 Sum_probs=156.7
Q ss_pred EEEEec-CCCEEEEeeCCC-----------eEEEEeCCCCcceec--cc-ccccceeEEEEecCCCEEEEEe-CCCeEEE
Q 010470 230 SILFEY-NSARLISGGQDK-----------SIKLWDTNTGSLSST--LY-GCLGSVLDLAITHDNRSVIAAS-SSNNLYV 293 (510)
Q Consensus 230 ~~~~s~-~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~--~~-~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i 293 (510)
++++.+ +|+.++.|+.++ .+.+||..+++.... +. .+.....++++.+++..+++|+ .++.+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556777 888888887543 588999987764221 21 2233344577888999999988 4568999
Q ss_pred EEcCCCCeeEeecCCCCc-eEEEEEecCCCCEEEEEe-CC-----CcEEEEECCCCeEeeee-----eecCceeEEEEcC
Q 010470 294 WDVNSGRVRHTLTGHTDK-VCAVDVSKISSRHVVSAA-YD-----RTLKVWDLHKGYCVNTI-----IFHSNCNALAFSM 361 (510)
Q Consensus 294 wd~~~~~~~~~~~~~~~~-v~~i~~~~~~~~~l~s~~-~d-----g~i~iwd~~~~~~~~~~-----~~~~~i~~i~~~~ 361 (510)
||..+++....-..+... -.++.+.+ ++.+++.|+ .+ ..+.+||..++.....- .....-....+..
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred ecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 999876543322212111 23344555 678888888 34 57999999887644321 0000000112224
Q ss_pred CCCEEEEecCCC---------cEEEEECCCCceeeeecccc--------cccEEEEEEcC-CCCEEEEEecCC-------
Q 010470 362 DGQTIFSGHIDG---------NLRLWDIQTGKLLSEVAAHS--------LAAVTSISLSR-SGNIILTSGRDN------- 416 (510)
Q Consensus 362 ~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~--------~~~i~~i~~~~-~~~~l~~~~~d~------- 416 (510)
++..++.|+.+| .+..||..+........... ...-.++.|.. +++++++|+.++
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~ 428 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 428 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence 555555555444 46788887665333222111 01234444543 677888887532
Q ss_pred ----cEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC-----------CeEEEEeCCCcce--eeccc
Q 010470 417 ----LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD-----------GSVYIWSISKADI--VRTLK 479 (510)
Q Consensus 417 ----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----------g~i~iwd~~~~~~--~~~~~ 479 (510)
.+.+||..+..-.... ....+........++.|+|++++.|+.+ ..+.+||..+++- +..+.
T Consensus 429 ~~~~~v~~yd~~~~~W~~~~-~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~ 507 (656)
T 1k3i_A 429 TNAHIITLGEPGTSPNTVFA-SNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNS 507 (656)
T ss_dssp CCEEEEECCSTTSCCEEEEC-TTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCS
T ss_pred CcceEEEcCCCCCCCeeEEc-cCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCC
Confidence 5778887765543322 0111111112335677899999999854 4689999876542 22222
Q ss_pred ccCcCEEEEEEeCCCCcEEEeeC
Q 010470 480 EHTAPVLSCSWSGLGKPLASADK 502 (510)
Q Consensus 480 ~~~~~v~~~~~~~~~~~l~s~~~ 502 (510)
..........+.|+|+.++.||.
T Consensus 508 ~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 508 IVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp SCCCTTEEEEECTTSCEEEEECC
T ss_pred CccccccHhhcCCCcEEEecCCC
Confidence 22222334566799999998884
No 263
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.15 E-value=2.4e-08 Score=85.80 Aligned_cols=187 Identities=10% Similarity=0.036 Sum_probs=132.3
Q ss_pred cceeEEEEecCCCEEEEEeCC--CeEEEEEcCCCCeeEeecCCCCce-EEEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 010470 268 GSVLDLAITHDNRSVIAASSS--NNLYVWDVNSGRVRHTLTGHTDKV-CAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC 344 (510)
Q Consensus 268 ~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~v-~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 344 (510)
.....+.|++ +.++.+.+.+ +.|+.+|+.+++.+..+....... -.+++. ++.+.+..-.++.+.+||..+.+.
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~ 97 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTP 97 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcE
Confidence 3456889986 5555555554 489999999999988876433321 234443 455566666789999999999999
Q ss_pred eeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccccc----ccEEEEEEcCCCCEEEEEecCCcEEE
Q 010470 345 VNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL----AAVTSISLSRSGNIILTSGRDNLHNL 420 (510)
Q Consensus 345 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~i~~i~~~~~~~~l~~~~~d~~i~i 420 (510)
+.++........++ +++..|+++..++.|.++|..+.+.+..+..... ..++.+.+. +|..++....++.|.+
T Consensus 98 ~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~v 174 (243)
T 3mbr_X 98 RARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIAR 174 (243)
T ss_dssp EEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred EEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEE
Confidence 99998776555555 4677777766788999999999988887765321 245566665 6665555556889999
Q ss_pred EEcCCceeeeEeecCCC---------eeecCceeEEEcCCCCEEEEEcC
Q 010470 421 FDIRSLEVCGSLRATGN---------RVASNWSRSCISPDESYVAAGSA 460 (510)
Q Consensus 421 ~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~s~~~~~l~~~~~ 460 (510)
.|..+++.+..+....- ......+.++++|+++.|++.+.
T Consensus 175 IDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 175 IDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp ECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 99999999988874421 12234567999998776665554
No 264
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.15 E-value=5.1e-08 Score=89.35 Aligned_cols=235 Identities=10% Similarity=0.027 Sum_probs=144.2
Q ss_pred ccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCC--eEE
Q 010470 215 STCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSN--NLY 292 (510)
Q Consensus 215 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~ 292 (510)
.+....+..+ ....+++|+++|.++++...++.|..||.... ....+ .....+..++++++|+++++....+ .|.
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~ 98 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVV 98 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE-eCCCCceeEEEcCCCcEEEEeccCCcceEE
Confidence 3344445433 46789999999997777778899999998754 32222 2235688999999999666554432 477
Q ss_pred EEEcCCCCeeEeecC-CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE-eeeee----------ecCceeEEEEc
Q 010470 293 VWDVNSGRVRHTLTG-HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC-VNTII----------FHSNCNALAFS 360 (510)
Q Consensus 293 iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~----------~~~~i~~i~~~ 360 (510)
.++..+++....... .......++..+ ++..+++...++.|.++|..++.. +.... .-...+.+ +
T Consensus 99 ~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s 175 (306)
T 2p4o_A 99 SLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K 175 (306)
T ss_dssp EEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred EEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence 777777775433221 122334455444 444455544688999999876532 11100 01234555 7
Q ss_pred CCCCEEE-EecCCCcEEEEECCC-Cce--eeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeee--Eeec
Q 010470 361 MDGQTIF-SGHIDGNLRLWDIQT-GKL--LSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCG--SLRA 434 (510)
Q Consensus 361 ~~~~~l~-~~~~dg~i~i~d~~~-~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~ 434 (510)
|++..|+ +....+.|..||+.. +.. ...+... .....++++++|+++++....+.|.+||.. ++... .+..
T Consensus 176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~ 252 (306)
T 2p4o_A 176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ 252 (306)
T ss_dssp EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGG
T ss_pred cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccc
Confidence 8887665 455678899999864 321 1111111 346678999999988887778899999975 44422 2221
Q ss_pred CCCeeecCceeEEEc---CCCCEEEEEcCCC
Q 010470 435 TGNRVASNWSRSCIS---PDESYVAAGSADG 462 (510)
Q Consensus 435 ~~~~~~~~~~~~~~s---~~~~~l~~~~~dg 462 (510)
. .....+++|. |+++.|++.+..+
T Consensus 253 ~----~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 253 G----VIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp T----CTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred c----cCCceEEEEecccCCCCEEEEECCCC
Confidence 1 1223458888 8877777665443
No 265
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=99.11 E-value=1.5e-07 Score=89.07 Aligned_cols=255 Identities=8% Similarity=0.015 Sum_probs=157.2
Q ss_pred ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCCCCeeEee
Q 010470 227 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRVRHTL 305 (510)
Q Consensus 227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~ 305 (510)
.-+|.+..+.+ +|+.+. ...|+.+++........+. ....+..++|++.+..|+.+. ..+.|+.+++..+.....+
T Consensus 78 ~~~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 154 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 154 (386)
T ss_dssp SSCEEECSSCC-EEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE
T ss_pred CCeECCccccc-eeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE
Confidence 34555555533 444433 3568888887655433333 345678999998766666555 6789999998866544444
Q ss_pred cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEE-EecCC-CcEEEEECCC
Q 010470 306 TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIF-SGHID-GNLRLWDIQT 382 (510)
Q Consensus 306 ~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~-~~~~d-g~i~i~d~~~ 382 (510)
.........+++.+..+.++++-...+.|.++++........+... ..+..++++|.+..|+ +.... +.|..+++..
T Consensus 155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 234 (386)
T 3v65_B 155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 234 (386)
T ss_dssp CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence 4333455778888755666667667788999998654332222222 4589999998666555 44444 7899999754
Q ss_pred CceeeeecccccccEEEEEEcCCCCEEEE-EecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC
Q 010470 383 GKLLSEVAAHSLAAVTSISLSRSGNIILT-SGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD 461 (510)
Q Consensus 383 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 461 (510)
. ....+..........|+|+|++..|+. -...+.|..+|+........+.... .....+++ ..+.++++....
T Consensus 235 ~-~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~----~~P~giav-~~~~ly~td~~~ 308 (386)
T 3v65_B 235 S-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGL----PHPFAITV-FEDSLYWTDWHT 308 (386)
T ss_dssp C-SCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSC----SSEEEEEE-ETTEEEEEETTT
T ss_pred C-CcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCC----CCceEEEE-ECCEEEEeeCCC
Confidence 3 333333232356899999987665554 4556789999987543322222211 11223666 455666777778
Q ss_pred CeEEEEeCCCcceeecccccCcCEEEEEE
Q 010470 462 GSVYIWSISKADIVRTLKEHTAPVLSCSW 490 (510)
Q Consensus 462 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 490 (510)
+.|..++..+++....+......+.++++
T Consensus 309 ~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 309 KSINSANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp TEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred CeEEEEECCCCcceEEEccCCCCCceEEE
Confidence 89999997677665555433333344443
No 266
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.07 E-value=6.3e-07 Score=93.51 Aligned_cols=277 Identities=11% Similarity=0.033 Sum_probs=170.4
Q ss_pred ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecc--------------cccccceeEEEEecCCCEEEEEeCCCe
Q 010470 225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTL--------------YGCLGSVLDLAITHDNRSVIAASSSNN 290 (510)
Q Consensus 225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--------------~~~~~~v~~~~~~~~~~~l~~~~~d~~ 290 (510)
...|.++...++|. |..|+..+-|.++|..++...... ......|.++...++|. |.+|+.++-
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 35688998888775 555666456888998766532211 12345789999998887 556676677
Q ss_pred EEEEEcCCCCeeEeec---------CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee----eecCceeEE
Q 010470 291 LYVWDVNSGRVRHTLT---------GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI----IFHSNCNAL 357 (510)
Q Consensus 291 i~iwd~~~~~~~~~~~---------~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~i~~i 357 (510)
|..|+..++....... .....|.++...+ + ..|..|+.++.|..||..++...... .....|.++
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~-g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i 412 (781)
T 3v9f_A 335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG-Q-GKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCS 412 (781)
T ss_dssp EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT-T-SCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEE
T ss_pred EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC-C-CCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEE
Confidence 8889877655332211 1235688887765 3 45667776778999998755433211 112458888
Q ss_pred EEcCCCCEEEEecCCCcEEEEECCCCceeeeec-ccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCC
Q 010470 358 AFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVA-AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATG 436 (510)
Q Consensus 358 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 436 (510)
...++|.+ .+|+.++-|..||..+++...... ......|.++...++|.+.+. +. +.+..||..++..........
T Consensus 413 ~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~ 489 (781)
T 3v9f_A 413 LKDSEGNL-WFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDTSN 489 (781)
T ss_dssp EECTTSCE-EEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECTTT
T ss_pred EECCCCCE-EEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccCcc
Confidence 88877765 456666679999987765433221 112267999999888775554 44 568889988765433322211
Q ss_pred -CeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeeccc---ccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 437 -NRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLK---EHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 437 -~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
......+.++...++|.+.+....+| |..||..+++...... .....|.++...++|.+.++. .+|.|..||
T Consensus 490 ~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d 565 (781)
T 3v9f_A 490 SQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPS 565 (781)
T ss_dssp SSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESC
T ss_pred cccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEEC
Confidence 11123345577888887665444355 8889877654332111 124578999998888755444 466646654
No 267
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=99.07 E-value=9.5e-08 Score=91.68 Aligned_cols=237 Identities=9% Similarity=0.061 Sum_probs=145.6
Q ss_pred ceeEEEEec-CCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeC-CC----cEEEEECCCC
Q 010470 269 SVLDLAITH-DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY-DR----TLKVWDLHKG 342 (510)
Q Consensus 269 ~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~-dg----~i~iwd~~~~ 342 (510)
....++++| ++..|+++...+.|+.+|+.++...... ........++|++ +++.|+.+.. ++ .+.+++.. +
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~~-g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTRE-S 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEGG-G
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeCC-C
Confidence 457899998 4666777766588999998766544333 3556688999998 6775555443 22 34444433 3
Q ss_pred eEe--eeeeecCceeEEEEcC-CCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEE-EEEecCCcE
Q 010470 343 YCV--NTIIFHSNCNALAFSM-DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNII-LTSGRDNLH 418 (510)
Q Consensus 343 ~~~--~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i 418 (510)
... ..+.....+..++++| +|.++++...++.|..|+...+................++|+|+|++| ++....+.|
T Consensus 215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 222 2333345578899999 788777777888999999876654333332222467899999999955 445567889
Q ss_pred EEEEcCC--cee--eeEeecC-C-----C------eeecCceeEEEc--------CCCCEEEEEcCCCeEEEEeCCCcce
Q 010470 419 NLFDIRS--LEV--CGSLRAT-G-----N------RVASNWSRSCIS--------PDESYVAAGSADGSVYIWSISKADI 474 (510)
Q Consensus 419 ~i~d~~~--~~~--~~~~~~~-~-----~------~~~~~~~~~~~s--------~~~~~l~~~~~dg~i~iwd~~~~~~ 474 (510)
..++... +.. ...+.+. . . ....+...+++. ++|.++++-..++.|+.++ .++..
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v 373 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRV 373 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEE
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcE
Confidence 9987653 221 1222211 0 0 011111134453 4577777777788999998 44543
Q ss_pred eeccc-------c----------cCcCEEEEEEeCC-CCcEEEeeCCCeEEEc
Q 010470 475 VRTLK-------E----------HTAPVLSCSWSGL-GKPLASADKNGVVCVW 509 (510)
Q Consensus 475 ~~~~~-------~----------~~~~v~~~~~~~~-~~~l~s~~~dg~i~iw 509 (510)
..... + .-....+++++|+ +.++++-..++.|+.+
T Consensus 374 ~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 426 (430)
T 3tc9_A 374 TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI 426 (430)
T ss_dssp EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence 32221 1 0125789999995 6555565566777754
No 268
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=99.04 E-value=1.8e-06 Score=79.22 Aligned_cols=227 Identities=9% Similarity=0.026 Sum_probs=140.7
Q ss_pred CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCC----CCeeEeecCCCCceEEEEEecCC
Q 010470 247 KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNS----GRVRHTLTGHTDKVCAVDVSKIS 321 (510)
Q Consensus 247 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~----~~~~~~~~~~~~~v~~i~~~~~~ 321 (510)
..|+..|+.+......+. ....+..++|++.+..|+.+. .++.|..+++.. ......+........++++.+.+
T Consensus 10 ~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~ 88 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 88 (316)
T ss_dssp SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence 468888988766544333 345678999998776666655 568999999875 22222233233456788888745
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEeeeee-ecCceeEEEEcCCCCEEEEec-CC-CcEEEEECCCCceeeeecccccccEE
Q 010470 322 SRHVVSAAYDRTLKVWDLHKGYCVNTII-FHSNCNALAFSMDGQTIFSGH-ID-GNLRLWDIQTGKLLSEVAAHSLAAVT 398 (510)
Q Consensus 322 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~~~~~~~~~~~i~ 398 (510)
++++++-...+.|.++|+........+. ....+..++++|.+..|+... .. +.|..+++. |.....+.........
T Consensus 89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~ 167 (316)
T 1ijq_A 89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPN 167 (316)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEE
T ss_pred CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCce
Confidence 6666666778899999987543332222 224589999999666555443 33 789999874 4444433322336789
Q ss_pred EEEEcCCCCEEEEE-ecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeec
Q 010470 399 SISLSRSGNIILTS-GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRT 477 (510)
Q Consensus 399 ~i~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 477 (510)
.++++|++..|+.+ ...+.|..+|+..... ..+....... .....+++. .+.++++....+.|..++..+++.+..
T Consensus 168 gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~~~~~~~-~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~ 244 (316)
T 1ijq_A 168 GITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRL-AHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNL 244 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTT-SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred EEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEeecCCcc-CCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEE
Confidence 99999877666555 4567899999875332 2222111001 112236664 466666677788999999766654443
Q ss_pred c
Q 010470 478 L 478 (510)
Q Consensus 478 ~ 478 (510)
+
T Consensus 245 i 245 (316)
T 1ijq_A 245 L 245 (316)
T ss_dssp E
T ss_pred E
Confidence 3
No 269
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=99.03 E-value=2.6e-07 Score=88.61 Aligned_cols=240 Identities=13% Similarity=0.109 Sum_probs=147.7
Q ss_pred ceEEEEEec-CCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCC-C----eEEEEEcCCCC
Q 010470 227 GCASILFEY-NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS-N----NLYVWDVNSGR 300 (510)
Q Consensus 227 ~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~----~i~iwd~~~~~ 300 (510)
....++++| ++..|+.+...+.|+.+|+.++.... +.........++|++++++|+++... + .+.+++. .+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence 567899998 45566666555889999998765433 33345567899999999977766642 1 3444443 333
Q ss_pred ee--EeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec--CceeEEEEcCCCCE-EEEecCCCcE
Q 010470 301 VR--HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH--SNCNALAFSMDGQT-IFSGHIDGNL 375 (510)
Q Consensus 301 ~~--~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~i~~i~~~~~~~~-l~~~~~dg~i 375 (510)
.. ..+. ......+++++|.++.++++-..++.|..|+...+......... ..+..++|+|+|++ +++....+.|
T Consensus 216 ~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 216 FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 22 2222 12345678888856666666667889999999876643333222 34789999999995 4555677889
Q ss_pred EEEECCC--Cce--eeeeccc--------------ccccEE-EEEEc--------CCCCEEEEEecCCcEEEEEcCCcee
Q 010470 376 RLWDIQT--GKL--LSEVAAH--------------SLAAVT-SISLS--------RSGNIILTSGRDNLHNLFDIRSLEV 428 (510)
Q Consensus 376 ~i~d~~~--~~~--~~~~~~~--------------~~~~i~-~i~~~--------~~~~~l~~~~~d~~i~i~d~~~~~~ 428 (510)
..++... +.. +..+... ...... .+.+. ++|.++++-..++.|+.++. ++..
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v 373 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRV 373 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEE
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcE
Confidence 9987643 221 1111110 012244 56653 45677777777889999984 4543
Q ss_pred eeEeecC----CC---e------eecCceeEEEcC-CCCEEEEEcCCCeEEEEeCC
Q 010470 429 CGSLRAT----GN---R------VASNWSRSCISP-DESYVAAGSADGSVYIWSIS 470 (510)
Q Consensus 429 ~~~~~~~----~~---~------~~~~~~~~~~s~-~~~~l~~~~~dg~i~iwd~~ 470 (510)
....... .. . .......++++| +|.++++-..++.|+.+++.
T Consensus 374 ~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 374 TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 3322110 00 0 012345688998 57777777777888888753
No 270
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=99.01 E-value=4.1e-07 Score=87.19 Aligned_cols=240 Identities=12% Similarity=0.113 Sum_probs=147.6
Q ss_pred cceEEEEEecC--CCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCC-----eEEEEEcCC
Q 010470 226 GGCASILFEYN--SARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSN-----NLYVWDVNS 298 (510)
Q Consensus 226 ~~v~~~~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~ 298 (510)
....+++|+|+ +..|+.+...+.|+.+|..++..... .........++|+++|+ |+++...+ .+..++...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 45679999984 44455544448999999987766443 33455688999999999 55554321 233333322
Q ss_pred CCe-eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee-ec--CceeEEEEcCCCCEE-EEecCCC
Q 010470 299 GRV-RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII-FH--SNCNALAFSMDGQTI-FSGHIDG 373 (510)
Q Consensus 299 ~~~-~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~--~~i~~i~~~~~~~~l-~~~~~dg 373 (510)
+.. ...+. .......+++.|.++.++++-..++.|..+|..++.....+. .. .....++|+|+|+.| ++....+
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 211 01121 223456678888556666666667899999998776533332 21 223569999999954 4556678
Q ss_pred cEEEEECC--CCce--eeeeccc--------------ccccEEEEEE---------cCCCCEEEEEecCCcEEEEEcCCc
Q 010470 374 NLRLWDIQ--TGKL--LSEVAAH--------------SLAAVTSISL---------SRSGNIILTSGRDNLHNLFDIRSL 426 (510)
Q Consensus 374 ~i~i~d~~--~~~~--~~~~~~~--------------~~~~i~~i~~---------~~~~~~l~~~~~d~~i~i~d~~~~ 426 (510)
.|+.++.. ++.. ...+... .......+++ .++|.++++-..++.|+.++. ++
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 89998865 2321 1111111 1134778999 778888888888889999985 44
Q ss_pred eeeeEeecCCC--------e------eecCceeEEEc-CCCCEEEEEcCCCeEEEEeCC
Q 010470 427 EVCGSLRATGN--------R------VASNWSRSCIS-PDESYVAAGSADGSVYIWSIS 470 (510)
Q Consensus 427 ~~~~~~~~~~~--------~------~~~~~~~~~~s-~~~~~l~~~~~dg~i~iwd~~ 470 (510)
... .+.+... . .......++++ ++|.++++-..++.|+.++++
T Consensus 375 ~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 375 RVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 433 3322211 0 11224458888 677777777778888887753
No 271
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.00 E-value=9.7e-07 Score=92.08 Aligned_cols=273 Identities=10% Similarity=0.022 Sum_probs=169.2
Q ss_pred cccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecc---------cccccceeEEEEecCCCEEEEEeCCCeEEEE
Q 010470 224 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTL---------YGCLGSVLDLAITHDNRSVIAASSSNNLYVW 294 (510)
Q Consensus 224 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 294 (510)
....|.++..+++|. |..|+.++-|..|+..++...... ......|.++...++|. |.+|+.++-|..|
T Consensus 311 ~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~ 388 (781)
T 3v9f_A 311 SNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVF 388 (781)
T ss_dssp SSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEE
T ss_pred CCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEE
Confidence 345799999998885 666776777889988765432211 11245689999888877 4556656668889
Q ss_pred EcCCCCeeEee---cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee---ecCceeEEEEcCCCCEEEE
Q 010470 295 DVNSGRVRHTL---TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII---FHSNCNALAFSMDGQTIFS 368 (510)
Q Consensus 295 d~~~~~~~~~~---~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~~ 368 (510)
+..++...... ......|.++...+ + ..|..|+.++.+..+|..+++...... ....|.++...++|.+ ..
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~-g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-wi 465 (781)
T 3v9f_A 389 ENGKRVAIYNKENRELLSNSVLCSLKDS-E-GNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKI-WI 465 (781)
T ss_dssp ETTEEEEECC-----CCCSBEEEEEECT-T-SCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEE-EE
T ss_pred ECCCCeEEEccCCCCCCCcceEEEEECC-C-CCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCE-EE
Confidence 87654332211 12346788887765 3 456667777789999988776443321 1245888888877764 44
Q ss_pred ecCCCcEEEEECCCCceeeeeccc----ccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCce
Q 010470 369 GHIDGNLRLWDIQTGKLLSEVAAH----SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWS 444 (510)
Q Consensus 369 ~~~dg~i~i~d~~~~~~~~~~~~~----~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 444 (510)
|+. +-|..||..+++........ ....|.++..+++|.+.+.+ .++-+..||..+..... +..........+.
T Consensus 466 gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~~Gl~~~~~~~~~~~~-~~~~~~l~~~~i~ 542 (781)
T 3v9f_A 466 GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT-FGGGVGIYTPDMQLVRK-FNQYEGFCSNTIN 542 (781)
T ss_dssp EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE-SSSCEEEECTTCCEEEE-ECTTTTCSCSCEE
T ss_pred EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE-cCCCEEEEeCCCCeEEE-ccCCCCCCCCeeE
Confidence 555 56999998776543332211 12578999999988866554 43447778887655432 3222222223455
Q ss_pred eEEEcCCCCEEEEEcCCCeEEEEeCCCcceeec--ccc-cCcCEEEEEEeCCCCcEEEeeCCCeE
Q 010470 445 RSCISPDESYVAAGSADGSVYIWSISKADIVRT--LKE-HTAPVLSCSWSGLGKPLASADKNGVV 506 (510)
Q Consensus 445 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i 506 (510)
++..+++|.+.++.. +|-|..||..+++...- -.+ ....|.++...++|.+.++ +.+|..
T Consensus 543 ~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~Gl~ 605 (781)
T 3v9f_A 543 QIYRSSKGQMWLATG-EGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAS-TNTGIS 605 (781)
T ss_dssp EEEECTTSCEEEEET-TEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEE-CSSCEE
T ss_pred EEEECCCCCEEEEEC-CCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEE-cCCceE
Confidence 677788888655544 77558898776643221 111 2345778888888865444 455543
No 272
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=98.96 E-value=2.2e-08 Score=75.77 Aligned_cols=83 Identities=22% Similarity=0.248 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 010470 90 ESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNE 169 (510)
Q Consensus 90 ~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (510)
...|..++.++.+++.++.++..++++..+.++.+++|+..++.++..++.++..++++|..+++|||..++++++.+|.
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~MN~ 146 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKETEAMNS 146 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHH
Q 010470 170 ANA 172 (510)
Q Consensus 170 ~~~ 172 (510)
++.
T Consensus 147 an~ 149 (152)
T 3a7p_A 147 EID 149 (152)
T ss_dssp ---
T ss_pred hcc
Confidence 874
No 273
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.96 E-value=9.4e-06 Score=74.82 Aligned_cols=272 Identities=8% Similarity=0.008 Sum_probs=148.8
Q ss_pred cceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc----ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe
Q 010470 226 GGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY----GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV 301 (510)
Q Consensus 226 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 301 (510)
..+.+|.|.+++..+++ +..|.| +...+.|+.-.... .....+.++.|.+ +. +++++..+.|+. ..+.|+.
T Consensus 36 ~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG~t 110 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGGQS 110 (327)
T ss_dssp SCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTTSS
T ss_pred CcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCCCC
Confidence 46899999877777774 556765 33344443212111 1244688899986 44 444555665544 3333443
Q ss_pred eEeec---CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee--ecCceeEEEEcCCCCEEEEecCCCcEE
Q 010470 302 RHTLT---GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII--FHSNCNALAFSMDGQTIFSGHIDGNLR 376 (510)
Q Consensus 302 ~~~~~---~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i~ 376 (510)
-.... .+...+..+.+.+ ++..++++ .+|.|..- ...|..-.... ....+..+.+.|++.+++++.. |.++
T Consensus 111 W~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~-G~~~ 186 (327)
T 2xbg_A 111 WSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSR-GSFY 186 (327)
T ss_dssp CEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETT-SSEE
T ss_pred ceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECC-CcEE
Confidence 22222 2335577777765 45555444 46654332 22232222222 2235788999999888877754 4554
Q ss_pred EEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEE
Q 010470 377 LWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVA 456 (510)
Q Consensus 377 i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 456 (510)
.-+-..+..-..+.......+..+.+.+++.++++ +.+|.+.+.+...+.....+..........+..+.+.+++.+++
T Consensus 187 ~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~ 265 (327)
T 2xbg_A 187 STWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWL 265 (327)
T ss_dssp EEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEE
T ss_pred EEeCCCCCceeECCCCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEE
Confidence 43211133222222222367889999998876644 45777776643333333222211001111244577888888777
Q ss_pred EEcCCCeEEEEeCCCcceeeccc---ccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 457 AGSADGSVYIWSISKADIVRTLK---EHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 457 ~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
++. +|.| ++..+.|+.-..+. .....+.++.|.+++ .+++++.+|.|.-++
T Consensus 266 ~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 266 AGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp EES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred EeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 665 6766 44555554443333 223567888887554 466777888887653
No 274
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.94 E-value=6.6e-07 Score=78.14 Aligned_cols=203 Identities=8% Similarity=0.112 Sum_probs=134.2
Q ss_pred eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec--CceeEEEEcCCCCEEEEecCCCcEEEEECC
Q 010470 304 TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH--SNCNALAFSMDGQTIFSGHIDGNLRLWDIQ 381 (510)
Q Consensus 304 ~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~ 381 (510)
.+.+-...+..++++|.++.++++...++.|...|+. ++.+..+... ...-.+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4556667899999999555566667889999999997 8888887554 568899999999877777677899999876
Q ss_pred CCce---eeeec-----ccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC---ceeeeEeec---CCCeeecCceeEE
Q 010470 382 TGKL---LSEVA-----AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS---LEVCGSLRA---TGNRVASNWSRSC 447 (510)
Q Consensus 382 ~~~~---~~~~~-----~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~---~~~~~~~~~~~~~ 447 (510)
.... +.... .........++|+|.++.|+++.......+|.+.. ...+..+.. .........+.++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 5432 22221 12235578999999998777777665555555531 111111111 0011123456688
Q ss_pred EcCC-CCEEEEEcCCCeEEEEeCCCcceeeccccc---------CcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 448 ISPD-ESYVAAGSADGSVYIWSISKADIVRTLKEH---------TAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 448 ~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
++|. +.+++....+..+.++|.. ++++..+.-. -...-+|+|.++|+..++ +..+.+++|
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence 9885 5566666677889999965 5555443221 125689999999985555 555666655
No 275
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.94 E-value=5.8e-07 Score=86.16 Aligned_cols=238 Identities=8% Similarity=0.032 Sum_probs=145.6
Q ss_pred ceeEEEEecC--CCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCC---C-cEEEEECCCC
Q 010470 269 SVLDLAITHD--NRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD---R-TLKVWDLHKG 342 (510)
Q Consensus 269 ~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d---g-~i~iwd~~~~ 342 (510)
....++|+|+ +..|+++...+.|+.+|+.++...... .......++++.+ +++++++.... . .+..++...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 4578999984 455666655589999998777655443 3456688999999 66654444321 1 2333333222
Q ss_pred eE-eeeeeecCceeEEEEcC-CCCEEEEecCCCcEEEEECCCCceeeee-cccccccEEEEEEcCCCCEEEE-EecCCcE
Q 010470 343 YC-VNTIIFHSNCNALAFSM-DGQTIFSGHIDGNLRLWDIQTGKLLSEV-AAHSLAAVTSISLSRSGNIILT-SGRDNLH 418 (510)
Q Consensus 343 ~~-~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~-~~~d~~i 418 (510)
.. ...+.....+..++++| +|.++++...++.|+.+|..++.....+ ..........++|+|+|++|+. ....+.|
T Consensus 218 ~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I 297 (433)
T 4hw6_A 218 FTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI 297 (433)
T ss_dssp TCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence 11 11222334578899999 7777777777889999998877652322 2222133457999999995554 4556889
Q ss_pred EEEEcC--Ccee--eeEeecC-CC----------eeecCceeEEE---------cCCCCEEEEEcCCCeEEEEeCCCcce
Q 010470 419 NLFDIR--SLEV--CGSLRAT-GN----------RVASNWSRSCI---------SPDESYVAAGSADGSVYIWSISKADI 474 (510)
Q Consensus 419 ~i~d~~--~~~~--~~~~~~~-~~----------~~~~~~~~~~~---------s~~~~~l~~~~~dg~i~iwd~~~~~~ 474 (510)
..++.. ++.. ...+.+. .. ........+++ .++|.++++-..++.|+.++. +|..
T Consensus 298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v 376 (433)
T 4hw6_A 298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRV 376 (433)
T ss_dssp EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEE
T ss_pred EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCE
Confidence 998865 2221 1122111 00 00112344788 788888888888899999984 4543
Q ss_pred eecccc-----------------cCcCEEEEEEe-CCCCcEEEeeCCCeEEEc
Q 010470 475 VRTLKE-----------------HTAPVLSCSWS-GLGKPLASADKNGVVCVW 509 (510)
Q Consensus 475 ~~~~~~-----------------~~~~v~~~~~~-~~~~~l~s~~~dg~i~iw 509 (510)
...... .-....+|+++ ++|.++++-..++.|+.+
T Consensus 377 ~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 429 (433)
T 4hw6_A 377 TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKI 429 (433)
T ss_dssp EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence 221110 11247899999 667666666667777764
No 276
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.94 E-value=7.1e-06 Score=77.83 Aligned_cols=245 Identities=9% Similarity=0.002 Sum_probs=152.3
Q ss_pred EEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCCC----CeeEeecCCCCceE
Q 010470 239 RLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSG----RVRHTLTGHTDKVC 313 (510)
Q Consensus 239 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~----~~~~~~~~~~~~v~ 313 (510)
+|+.+. ...|+..++........+ .....+..++|++.+..|+.+. ..+.|+.+++... .....+........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 444443 468899998866543333 3456788999998777666665 5678999988652 23333333445678
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee-ecCceeEEEEcCCCCEEEEec-C-CCcEEEEECCCCceeeeec
Q 010470 314 AVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII-FHSNCNALAFSMDGQTIFSGH-I-DGNLRLWDIQTGKLLSEVA 390 (510)
Q Consensus 314 ~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~ 390 (510)
.+++.+..++++++-...+.|.+.++........+. ....+..++++|.+..|+... . .+.|...++... ....+.
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~-~~~~~~ 241 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLV 241 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC-SCEEEE
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC-ccEEEE
Confidence 899987566677777778899999997554433333 224589999999666555443 2 478999998543 333333
Q ss_pred ccccccEEEEEEcCCCCEEEEE-ecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470 391 AHSLAAVTSISLSRSGNIILTS-GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI 469 (510)
Q Consensus 391 ~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~ 469 (510)
......+..|++++++..|+.+ ...+.|..+|+............. ... ....+++ ..+.++++....+.|..+|.
T Consensus 242 ~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~-~l~-~P~gl~v-~~~~lywtd~~~~~V~~~~~ 318 (400)
T 3p5b_L 242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK-RLA-HPFSLAV-FEDKVFWTDIINEAIFSANR 318 (400)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSS-TTS-SEEEEEE-ETTEEEEEESSSCSEEEEES
T ss_pred ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCC-CCC-CCEEEEE-eCCEEEEecCCCCeEEEEEc
Confidence 2223678999999877766655 456789999987543332222211 111 1122555 34455666667788999997
Q ss_pred CCcceeecccccCcCEEEEE
Q 010470 470 SKADIVRTLKEHTAPVLSCS 489 (510)
Q Consensus 470 ~~~~~~~~~~~~~~~v~~~~ 489 (510)
.+|+.+..+......+.++.
T Consensus 319 ~~G~~~~~i~~~~~~p~~i~ 338 (400)
T 3p5b_L 319 LTGSDVNLLAENLLSPEDMV 338 (400)
T ss_dssp SSCCCCEEEECSCSCEEEEE
T ss_pred CCCCceEEEecCCCCCceEE
Confidence 77766655543333344443
No 277
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.94 E-value=1.4e-06 Score=79.75 Aligned_cols=227 Identities=7% Similarity=0.030 Sum_probs=139.6
Q ss_pred CCeEEEEeCCCCcc-eecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCCCCe-eEeecCCCCceEEEEEecCCC
Q 010470 246 DKSIKLWDTNTGSL-SSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRV-RHTLTGHTDKVCAVDVSKISS 322 (510)
Q Consensus 246 dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~~~~ 322 (510)
...|+.+++..... ...+......+..++|++.+..|+.+. ..+.|..+++..+.. ...+........++++.+.++
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 45788999876541 112222234567899998766665554 678899999876532 122222234566788887566
Q ss_pred CEEEEEeCCCcEEEEECCCCeEeeee-eecCceeEEEEcCCCCEEEEec--CCCcEEEEECCCCceeeeecccccccEEE
Q 010470 323 RHVVSAAYDRTLKVWDLHKGYCVNTI-IFHSNCNALAFSMDGQTIFSGH--IDGNLRLWDIQTGKLLSEVAAHSLAAVTS 399 (510)
Q Consensus 323 ~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~i~~ 399 (510)
+++++-...+.|.++++........+ .....+..++++|.+..|+... ..+.|..+++. |.....+..........
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~Png 170 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNG 170 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEE
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCccE
Confidence 66677667789999998654322222 2224589999998665555444 35789999875 43333332222357899
Q ss_pred EEEcCCCCEEEE-EecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecc
Q 010470 400 ISLSRSGNIILT-SGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTL 478 (510)
Q Consensus 400 i~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 478 (510)
++++|++..|+. -+..+.|..+|+.............. ....+++. .+.++++-...+.|..++..+++....+
T Consensus 171 lavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~----~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 171 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLP----HPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCS----CEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCC----CceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEE
Confidence 999997665555 45567899999875332222221111 12235564 3455666667788999998777654443
No 278
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.92 E-value=2.2e-06 Score=74.86 Aligned_cols=201 Identities=14% Similarity=0.161 Sum_probs=132.1
Q ss_pred eeccccccceEEEEEecCCCEEE-EeeCCCeEEEEeCCCCcceeccc-ccccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470 219 HKINAHEGGCASILFEYNSARLI-SGGQDKSIKLWDTNTGSLSSTLY-GCLGSVLDLAITHDNRSVIAASSSNNLYVWDV 296 (510)
Q Consensus 219 ~~~~~h~~~v~~~~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 296 (510)
+.+.+-.+.+..++|+|+++.|+ +...++.|...|.. ++.+..+. +.....-.+++.+++.++++.-.++.+.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 34556667899999999876554 57778899999998 87777663 22356788999999987777667889999988
Q ss_pred CCCCe---eEeec------CCCCceEEEEEecCCCCEEEEEeCCC--cEEEEEC-CCCeEeeeee--------ecCceeE
Q 010470 297 NSGRV---RHTLT------GHTDKVCAVDVSKISSRHVVSAAYDR--TLKVWDL-HKGYCVNTII--------FHSNCNA 356 (510)
Q Consensus 297 ~~~~~---~~~~~------~~~~~v~~i~~~~~~~~~l~s~~~dg--~i~iwd~-~~~~~~~~~~--------~~~~i~~ 356 (510)
..... ..... ..+....+++|.| .++.|+++.... .|..|+- ..+..+..+. .-..+.+
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~ 177 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSR-QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSG 177 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEET-TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeC-CCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCcee
Confidence 75442 22221 1344568999999 454555454443 4555541 0111111111 1135789
Q ss_pred EEEcCC-CCEEEEecCCCcEEEEECCCCceeeeecccc--------cccEEEEEEcCCCCEEEEEecCCcEEEEEc
Q 010470 357 LAFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS--------LAAVTSISLSRSGNIILTSGRDNLHNLFDI 423 (510)
Q Consensus 357 i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~ 423 (510)
++++|. +.+++....+..+.++|. .++.+..+.... ......|+|+++|++.++ +..+.+++|..
T Consensus 178 l~~dp~tg~lliLS~~s~~L~~~d~-~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 178 AEFNQQKNTLLVLSHESRALQEVTL-VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECT-TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred EEEcCCCCeEEEEECCCCeEEEEcC-CCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 999994 556666777888999996 466665554332 136789999999985555 66677776654
No 279
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.90 E-value=1.3e-06 Score=83.77 Aligned_cols=247 Identities=13% Similarity=0.093 Sum_probs=152.2
Q ss_pred ceEEEEEec-CCCEE-EEeeCCCeEEEEeCCCCcceecccc---cccceeEEEE-------ecCCCEEEEEeCCC-----
Q 010470 227 GCASILFEY-NSARL-ISGGQDKSIKLWDTNTGSLSSTLYG---CLGSVLDLAI-------THDNRSVIAASSSN----- 289 (510)
Q Consensus 227 ~v~~~~~s~-~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~-------~~~~~~l~~~~~d~----- 289 (510)
....|+|+| ++..| ++....+.|++.|+.++........ .......++| ++++..|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899998 34444 4444457799999987766443322 2235789999 99999777776543
Q ss_pred --eEEEEEcCC-CCee-----EeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECC-------CCeE----------
Q 010470 290 --NLYVWDVNS-GRVR-----HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH-------KGYC---------- 344 (510)
Q Consensus 290 --~i~iwd~~~-~~~~-----~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~-------~~~~---------- 344 (510)
.|.+++... +... ..+... .....++++|.++.++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 366665333 2221 222211 2345678888666667777778899999987 4543
Q ss_pred -eee-eee--cCceeEEEEcCCCCE-EEEecCCCcEEEEEC--CCCce--eeeeccc--------------ccccEE-EE
Q 010470 345 -VNT-IIF--HSNCNALAFSMDGQT-IFSGHIDGNLRLWDI--QTGKL--LSEVAAH--------------SLAAVT-SI 400 (510)
Q Consensus 345 -~~~-~~~--~~~i~~i~~~~~~~~-l~~~~~dg~i~i~d~--~~~~~--~~~~~~~--------------~~~~i~-~i 400 (510)
... +.. ......++|+|+|++ +++-+..+.|+.++. ..+.. ...+... ....+. .+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 112 222 234689999999995 555567788998664 33321 1122111 012345 55
Q ss_pred EEc-------CCCCEEEEEecCCcEEEEEcCCceeeeEeecCCC--------------e------eecCceeEEEcCC-C
Q 010470 401 SLS-------RSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGN--------------R------VASNWSRSCISPD-E 452 (510)
Q Consensus 401 ~~~-------~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--------------~------~~~~~~~~~~s~~-~ 452 (510)
... ++|.++++-..++.|+.++. ++. +.++.+... . .......++++++ |
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g 456 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE 456 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEeC-CCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence 665 56777888888899999994 453 344433211 1 1123456888986 8
Q ss_pred CEEEEEcCCCeEEEEeCCCcceee
Q 010470 453 SYVAAGSADGSVYIWSISKADIVR 476 (510)
Q Consensus 453 ~~l~~~~~dg~i~iwd~~~~~~~~ 476 (510)
.++++-+.+..|+.+++.....+.
T Consensus 457 ~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 457 MFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp EEEEEETTTTEEEEEEECCCC---
T ss_pred EEEEEeCCCCEEEEEECCCCcccc
Confidence 888888888899999887655443
No 280
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.85 E-value=5.4e-06 Score=77.12 Aligned_cols=205 Identities=11% Similarity=0.039 Sum_probs=132.7
Q ss_pred cceEEEEEecCCCEE-EEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEE-eCCCeEEEEEcCCCCeeE
Q 010470 226 GGCASILFEYNSARL-ISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAA-SSSNNLYVWDVNSGRVRH 303 (510)
Q Consensus 226 ~~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~ 303 (510)
..+.+++|++.+..| ++-...+.|..+++..+.....+.........+++.+.+..|+.+ ...+.|.++++.......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 347899999765555 555567889999988665433333333456789999866655554 467899999987544333
Q ss_pred eecCCCCceEEEEEecCCCCEEEEEeCC-CcEEEEECCCCeEeeeee--ecCceeEEEEcCCCCEEE-EecCCCcEEEEE
Q 010470 304 TLTGHTDKVCAVDVSKISSRHVVSAAYD-RTLKVWDLHKGYCVNTII--FHSNCNALAFSMDGQTIF-SGHIDGNLRLWD 379 (510)
Q Consensus 304 ~~~~~~~~v~~i~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~-~~~~dg~i~i~d 379 (510)
.+.........+++.|.++.++++-... +.|..+++.... ...+. .-..++.++++|++..|+ +-...+.|..+|
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~ 231 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN 231 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEe
Confidence 3434446678999998555555555555 789999986432 22222 123488999998666555 555677899999
Q ss_pred CCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEee
Q 010470 380 IQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLR 433 (510)
Q Consensus 380 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 433 (510)
+.... ...+.......+..+++ ..+.++++....+.|..++..+++....+.
T Consensus 232 ~dG~~-~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 232 LDGSH-RKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TTSCS-CEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCCc-eEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 86433 33332222356788888 455666666677888888866665554443
No 281
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.84 E-value=3.4e-06 Score=80.90 Aligned_cols=238 Identities=10% Similarity=0.087 Sum_probs=144.3
Q ss_pred ceeEEEEec-CCCEEEEEe-CCCeEEEEEcCCCCeeEeecCC---CCceEEEEE-------ecCCCCEEEEEeCCC----
Q 010470 269 SVLDLAITH-DNRSVIAAS-SSNNLYVWDVNSGRVRHTLTGH---TDKVCAVDV-------SKISSRHVVSAAYDR---- 332 (510)
Q Consensus 269 ~v~~~~~~~-~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~---~~~v~~i~~-------~~~~~~~l~s~~~dg---- 332 (510)
....|+|+| ++..|+++. ..+.|++.|+.++......... ......++| ++ ++..++++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 356899998 355555554 4567899998877655444322 235889999 88 666555554443
Q ss_pred ---cEEEEECCC-CeEe-----eeeeecCceeEEEEcC-CCCEEEEecCCCcEEEEECC-------CCce----------
Q 010470 333 ---TLKVWDLHK-GYCV-----NTIIFHSNCNALAFSM-DGQTIFSGHIDGNLRLWDIQ-------TGKL---------- 385 (510)
Q Consensus 333 ---~i~iwd~~~-~~~~-----~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~-------~~~~---------- 385 (510)
.|.+++... +... ..+.....+..++++| ++.++++...++.|+.||+. ++..
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred cCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 367776443 2221 2333334577899999 55666677788899999987 4543
Q ss_pred -eee-ecccccccEEEEEEcCCCCEE-EEEecCCcEEEEEcC--Cceee--eEeecC---CC---------eeecCceeE
Q 010470 386 -LSE-VAAHSLAAVTSISLSRSGNII-LTSGRDNLHNLFDIR--SLEVC--GSLRAT---GN---------RVASNWSRS 446 (510)
Q Consensus 386 -~~~-~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~i~d~~--~~~~~--~~~~~~---~~---------~~~~~~~~~ 446 (510)
... +..........|+|+|+|++| ++-+..+.|+.++.. .+... ..+.+. .. ....+...+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 112 222222557899999999954 445566788886653 33221 122221 00 011111134
Q ss_pred EEc-------CCCCEEEEEcCCCeEEEEeCCCcceeeccccc------------------------CcCEEEEEEeCC-C
Q 010470 447 CIS-------PDESYVAAGSADGSVYIWSISKADIVRTLKEH------------------------TAPVLSCSWSGL-G 494 (510)
Q Consensus 447 ~~s-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------------~~~v~~~~~~~~-~ 494 (510)
+.. ++|.++++-..+++|+.++ .+|.. .++-+. -....+|+++++ |
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g 456 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE 456 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence 554 5678888888889999999 45532 222111 124789999997 7
Q ss_pred CcEEEeeCCCeEEEc
Q 010470 495 KPLASADKNGVVCVW 509 (510)
Q Consensus 495 ~~l~s~~~dg~i~iw 509 (510)
.++++-..+..|+.+
T Consensus 457 ~lyVaD~~N~rIrki 471 (496)
T 3kya_A 457 MFYVHDQVGHTIRTI 471 (496)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred EEEEEeCCCCEEEEE
Confidence 666666667778765
No 282
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.83 E-value=1.1e-05 Score=73.91 Aligned_cols=219 Identities=11% Similarity=0.045 Sum_probs=131.8
Q ss_pred EEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC---CeEeeeeee-c-CceeE
Q 010470 282 VIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK---GYCVNTIIF-H-SNCNA 356 (510)
Q Consensus 282 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~-~-~~i~~ 356 (510)
|+.+.. +.|+..|+.+......+. ....+.+++|.+.++.++++-..++.|..+++.. +.....+.. . ..+..
T Consensus 4 ll~~~~-~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 4 LFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (316)
T ss_dssp EEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEECC-CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence 444443 468889998876655554 3456789999985555666666678999999875 122222221 1 35788
Q ss_pred EEEcCCC-CEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC--CcEEEEEcCCceeeeEee
Q 010470 357 LAFSMDG-QTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD--NLHNLFDIRSLEVCGSLR 433 (510)
Q Consensus 357 i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~ 433 (510)
+++++.+ +.+++....+.|.++|+.... ...+.......+..++++|.+..|+.+... +.|..+++..... ..+.
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-~~~~ 159 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLV 159 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEE
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCCCc-eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-EEEE
Confidence 9998744 455566778899999986443 333322222578999999976666555443 6888888764322 2221
Q ss_pred cCCCeeecCceeEEEcCCCCEEE-EEcCCCeEEEEeCCCcceeecc-c--ccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 434 ATGNRVASNWSRSCISPDESYVA-AGSADGSVYIWSISKADIVRTL-K--EHTAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 434 ~~~~~~~~~~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~-~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
... ......++++|++..|+ +-+..+.|..+|+.... ...+ . .......++++.. +..+++....+.|..+
T Consensus 160 ~~~---~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~~-~~ly~~d~~~~~V~~~ 234 (316)
T 1ijq_A 160 TEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSA 234 (316)
T ss_dssp CSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred ECC---CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEEC-CEEEEEECCCCeEEEE
Confidence 111 11234589998766555 45566799999987432 2222 1 1223467788853 4455555555666554
No 283
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.80 E-value=3.6e-06 Score=76.20 Aligned_cols=196 Identities=12% Similarity=0.303 Sum_probs=134.2
Q ss_pred cCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecC----CC---EEEEEe-C--CCeEEEEEcC--CCCee
Q 010470 235 YNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHD----NR---SVIAAS-S--SNNLYVWDVN--SGRVR 302 (510)
Q Consensus 235 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~-~--d~~i~iwd~~--~~~~~ 302 (510)
|...+++.....+-+.+||+ +|+.+..+.. +.++.+..-|+ |+ ++++.. . +++|.+|++. ++ .+
T Consensus 38 p~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l 113 (355)
T 3amr_A 38 PQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TL 113 (355)
T ss_dssp GGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CE
T ss_pred CCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ce
Confidence 34456777777889999999 7888887753 55666666553 22 233333 3 5799999774 33 34
Q ss_pred EeecC------CC-CceEEEEE--ecCCCC-EEEEEeCCCcEEEEECC-------CCeEeeeeeecCceeEEEEcCCCCE
Q 010470 303 HTLTG------HT-DKVCAVDV--SKISSR-HVVSAAYDRTLKVWDLH-------KGYCVNTIIFHSNCNALAFSMDGQT 365 (510)
Q Consensus 303 ~~~~~------~~-~~v~~i~~--~~~~~~-~l~s~~~dg~i~iwd~~-------~~~~~~~~~~~~~i~~i~~~~~~~~ 365 (510)
..+.. .. ..+..+++ +|..+. ++++...+|.+..|++. +.+.++++...+.+..+.+.+....
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~ 193 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGR 193 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTE
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCe
Confidence 44421 11 45666777 563443 67888889999999882 3467888888888999999998899
Q ss_pred EEEecCCCcEEEEECC-----CCceeeeeccc-ccccEEEEEE--cCCCC-EEEEEe-cCCcEEEEEcC-CceeeeEeec
Q 010470 366 IFSGHIDGNLRLWDIQ-----TGKLLSEVAAH-SLAAVTSISL--SRSGN-IILTSG-RDNLHNLFDIR-SLEVCGSLRA 434 (510)
Q Consensus 366 l~~~~~dg~i~i~d~~-----~~~~~~~~~~~-~~~~i~~i~~--~~~~~-~l~~~~-~d~~i~i~d~~-~~~~~~~~~~ 434 (510)
|+++-.+..|..||.. +++.+..+... -...+..|++ .+++. +|++++ .++...+||.. +.+.+..|..
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~I 273 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFRI 273 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEE
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEEe
Confidence 9999998778888855 34455444322 2236788887 45555 666655 67799999997 6777777753
No 284
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.79 E-value=5.9e-06 Score=78.07 Aligned_cols=206 Identities=11% Similarity=0.031 Sum_probs=133.3
Q ss_pred ccceEEEEEecCCCE-EEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEE-eCCCeEEEEEcCCCCee
Q 010470 225 EGGCASILFEYNSAR-LISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAA-SSSNNLYVWDVNSGRVR 302 (510)
Q Consensus 225 ~~~v~~~~~s~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~ 302 (510)
...+..++|++.+.. +++-...+.|..+++..+.....+.........+++.+.+..|+.+ ...+.|.++++......
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~ 194 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 194 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence 345788999975554 4555567899999988665433333333455789999866655554 45678999887754433
Q ss_pred EeecCCCCceEEEEEecCCCCEEEEEeCC-CcEEEEECCCCeEeeeee-e-cCceeEEEEcCCCCEEE-EecCCCcEEEE
Q 010470 303 HTLTGHTDKVCAVDVSKISSRHVVSAAYD-RTLKVWDLHKGYCVNTII-F-HSNCNALAFSMDGQTIF-SGHIDGNLRLW 378 (510)
Q Consensus 303 ~~~~~~~~~v~~i~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~-~-~~~i~~i~~~~~~~~l~-~~~~dg~i~i~ 378 (510)
..+.........+++.|.++.++++-... +.|..+++.... ...+. . -..++.++++|++..|+ +-...+.|..+
T Consensus 195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~ 273 (386)
T 3v65_B 195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA 273 (386)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEE
Confidence 33444446678999998555555555445 789999986433 22332 2 23478999998665554 55667789999
Q ss_pred ECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEee
Q 010470 379 DIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLR 433 (510)
Q Consensus 379 d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 433 (510)
|+.... ...+.......+..+++ ..+.++++....+.|..++..++.....+.
T Consensus 274 d~dG~~-~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 274 NLDGSH-RKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp CTTSCS-CEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred eCCCCe-eEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 986433 33332222356788888 445666666677889888876666555554
No 285
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.78 E-value=1.2e-06 Score=90.57 Aligned_cols=192 Identities=9% Similarity=0.003 Sum_probs=111.8
Q ss_pred ceEEEEEe-cCCCEEEEeeC-C----CeEEEEeCCCC-cceecccccccceeEEEEecCCCEEEEEeCC-----CeEEEE
Q 010470 227 GCASILFE-YNSARLISGGQ-D----KSIKLWDTNTG-SLSSTLYGCLGSVLDLAITHDNRSVIAASSS-----NNLYVW 294 (510)
Q Consensus 227 ~v~~~~~s-~~~~~l~s~~~-d----g~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iw 294 (510)
.+...+|| |||++||.+.. + ..|+++|+.++ +.+... -......+.|+|||+.|+....+ ..|+++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~--~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK--VSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC--EEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc--ccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence 68889999 99998875443 2 35999999988 632211 01124578999999988887764 368888
Q ss_pred EcCCCCe--eEeec-CCCCceEEEEEecCCCCEEEEEe---CCCcEEEEECCCC--eE-eeeeee-c-CceeEEEEcCCC
Q 010470 295 DVNSGRV--RHTLT-GHTDKVCAVDVSKISSRHVVSAA---YDRTLKVWDLHKG--YC-VNTIIF-H-SNCNALAFSMDG 363 (510)
Q Consensus 295 d~~~~~~--~~~~~-~~~~~v~~i~~~~~~~~~l~s~~---~dg~i~iwd~~~~--~~-~~~~~~-~-~~i~~i~~~~~~ 363 (510)
++.++.. ...+. ........+.|+| ++++|+..+ ....|.++|+.++ .. +..+.. . ....++.|+. |
T Consensus 253 ~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g 330 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-T 330 (751)
T ss_dssp ETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-T
T ss_pred ECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-C
Confidence 8877642 22332 2234567789999 677666544 2456888999765 22 022222 2 2234444443 5
Q ss_pred CEEE-EecCC----CcEEEEECCCCceeee--ecccccccEEEEEEcCCCCEEEEEecCCc--EEEEEc
Q 010470 364 QTIF-SGHID----GNLRLWDIQTGKLLSE--VAAHSLAAVTSISLSRSGNIILTSGRDNL--HNLFDI 423 (510)
Q Consensus 364 ~~l~-~~~~d----g~i~i~d~~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~d~~--i~i~d~ 423 (510)
..|+ ....+ ..|..+|+.++..... +.......+..+.+. .+.++++...++. +.++++
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 5444 44333 3677778765322222 222221245556654 2344555666664 556665
No 286
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.75 E-value=7.6e-06 Score=74.89 Aligned_cols=215 Identities=9% Similarity=-0.002 Sum_probs=129.8
Q ss_pred CCeEEEEEcCCCC--eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee-e-ecCceeEEEEcC-C
Q 010470 288 SNNLYVWDVNSGR--VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI-I-FHSNCNALAFSM-D 362 (510)
Q Consensus 288 d~~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~-~~~~i~~i~~~~-~ 362 (510)
...|+.+++.... ....+. ....+.++.|.+.++.++++-...+.|..+++..+.....+ . .-..+..+++.+ .
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~ 90 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 90 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence 4678999987653 222222 22456789999855666666667789999998765322222 2 224577899987 4
Q ss_pred CCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEec--CCcEEEEEcCCceeeeEeecCCCeee
Q 010470 363 GQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR--DNLHNLFDIRSLEVCGSLRATGNRVA 440 (510)
Q Consensus 363 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~ 440 (510)
+.++++-...+.|.++++... ....+.......+..++++|.+..|+.+.. .+.|..+++.............
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~-~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l---- 165 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGS-LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEI---- 165 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSC-SCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSC----
T ss_pred CeEEEEECCCCEEEEEECCCC-cEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCC----
Confidence 555566667789999998543 333333233367899999997666666553 5788888876433222221111
Q ss_pred cCceeEEEcCCCCEE-EEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 441 SNWSRSCISPDESYV-AAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 441 ~~~~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
.....++++|++..| ++-+..+.|..+++........+........++++..+ ..+++-...+.|..+
T Consensus 166 ~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~-~lywtd~~~~~V~~~ 234 (318)
T 3sov_A 166 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILAC 234 (318)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETT-EEEEEETTTTEEEEE
T ss_pred CCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCC-EEEEEecCCCeEEEE
Confidence 123458999865554 45556789999998643322222223445677777533 344444445555543
No 287
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.75 E-value=9.3e-05 Score=65.59 Aligned_cols=251 Identities=10% Similarity=0.111 Sum_probs=156.7
Q ss_pred CCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEE
Q 010470 246 DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHV 325 (510)
Q Consensus 246 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 325 (510)
+..|.|.|+.++..+....- ..-+.-.+|..+.++.-. ...+.|||+++...+..+.- ...|.--.|.. .+.|
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi---~AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis--~~~L 120 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTV 120 (365)
T ss_dssp EEEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECS--SSEE
T ss_pred CCEEEEEECCCCCCcccccc---ccceeeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecC--CCeE
Confidence 44799999987654322111 112345688888776665 67999999999888887774 46777777764 5556
Q ss_pred EEEeCCCcEEEEECCC-CeEeeeeeec-----CceeEEEEcCCCCEEEEec-------CCCcEEEEECCCCceeeeeccc
Q 010470 326 VSAAYDRTLKVWDLHK-GYCVNTIIFH-----SNCNALAFSMDGQTIFSGH-------IDGNLRLWDIQTGKLLSEVAAH 392 (510)
Q Consensus 326 ~s~~~dg~i~iwd~~~-~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~ 392 (510)
+..+ +..|+-|++.. ..+.+.+..+ ..|..-..+++.++++..+ -.|.+.+|..+. +..+.+.+|
T Consensus 121 ~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGh 198 (365)
T 2xzh_A 121 ALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGH 198 (365)
T ss_dssp EEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCS
T ss_pred EEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeeee
Confidence 5555 67899999974 3555566554 2377777888999877533 236788998754 344555555
Q ss_pred ccccEEEEEEcCC---CCEEEEEec---CCcEEEEEcCCc---e------eeeEeecCCCeeecCceeEEEcCCCCEEEE
Q 010470 393 SLAAVTSISLSRS---GNIILTSGR---DNLHNLFDIRSL---E------VCGSLRATGNRVASNWSRSCISPDESYVAA 457 (510)
Q Consensus 393 ~~~~i~~i~~~~~---~~~l~~~~~---d~~i~i~d~~~~---~------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 457 (510)
. .....+.+..+ ..+++.+.. .+.++|.++... . .+..+..+ .....-...+.+|+.-..++.
T Consensus 199 a-a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fpp-ea~~DFPVamqvs~kygviyv 276 (365)
T 2xzh_A 199 A-ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP-EAQNDFPVAMQISEKHDVVFL 276 (365)
T ss_dssp E-EEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCT-TCTTCCEEEEEEETTTTEEEE
T ss_pred e-eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCc-cccCCceEEEEecccCCEEEE
Confidence 3 22222222211 113333332 258888888432 1 11111111 111111223667888888999
Q ss_pred EcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEE
Q 010470 458 GSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVC 507 (510)
Q Consensus 458 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 507 (510)
-+.-|.|++||+.++.++..-+-...+|...+-+....-++.....|.|.
T Consensus 277 iTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl 326 (365)
T 2xzh_A 277 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 326 (365)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEE
T ss_pred EeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEE
Confidence 99999999999999999887766667776666655544555556666653
No 288
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.71 E-value=0.00015 Score=66.89 Aligned_cols=252 Identities=10% Similarity=0.095 Sum_probs=159.4
Q ss_pred CCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEE
Q 010470 246 DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHV 325 (510)
Q Consensus 246 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 325 (510)
+..|.|.|+.++..+..-.- .--+.-.+|..+.++.-. ..++.|||+++...+..+.- ...|.--.|.. .+.|
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis--~~~l 119 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTV 119 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEE--TTEE
T ss_pred CCeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecC--CCeE
Confidence 44899999987654322111 113455678887666655 67999999999888887774 45677777765 4555
Q ss_pred EEEeCCCcEEEEECCC-CeEeeeeeec-----CceeEEEEcCCCCEEEEec-------CCCcEEEEECCCCceeeeeccc
Q 010470 326 VSAAYDRTLKVWDLHK-GYCVNTIIFH-----SNCNALAFSMDGQTIFSGH-------IDGNLRLWDIQTGKLLSEVAAH 392 (510)
Q Consensus 326 ~s~~~dg~i~iwd~~~-~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~ 392 (510)
+..+ +..|+-|++.. ..+++.+..+ ..|..-..+++.++++..+ -.|.+.+|....+ ..+.+.+|
T Consensus 120 ~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGh 197 (494)
T 1bpo_A 120 ALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH 197 (494)
T ss_dssp EEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCS
T ss_pred EEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheee
Confidence 5555 67899999974 3455666554 2377777889999887432 2477889997543 44555555
Q ss_pred ccccEEEEEEcCCC---CEEEEEec---CCcEEEEEcCCc---ee-----eeEeecCCCeeecCceeEEEcCCCCEEEEE
Q 010470 393 SLAAVTSISLSRSG---NIILTSGR---DNLHNLFDIRSL---EV-----CGSLRATGNRVASNWSRSCISPDESYVAAG 458 (510)
Q Consensus 393 ~~~~i~~i~~~~~~---~~l~~~~~---d~~i~i~d~~~~---~~-----~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 458 (510)
. .....+.+..+. .+++.+.. .+.++|.++... .. ...+..+......-...+.+|+.-..++.-
T Consensus 198 a-a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyvi 276 (494)
T 1bpo_A 198 A-ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 276 (494)
T ss_dssp E-EEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEE
T ss_pred e-eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEE
Confidence 3 333333332111 13333333 278999988532 10 011111111111112336778888889999
Q ss_pred cCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEE
Q 010470 459 SADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVC 507 (510)
Q Consensus 459 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 507 (510)
+.-|.|++||+.++.++..-+-...+|...+-+....-++.....|.|.
T Consensus 277 TK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl 325 (494)
T 1bpo_A 277 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 325 (494)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEE
T ss_pred ecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEE
Confidence 9999999999999999887766677777666666655566666777653
No 289
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.69 E-value=4.8e-05 Score=72.10 Aligned_cols=209 Identities=11% Similarity=0.009 Sum_probs=132.0
Q ss_pred cccceEEEEEecCCCEE-EEeeCCCeEEEEeCCCC----cceecccccccceeEEEEecCCCEEEEE-eCCCeEEEEEcC
Q 010470 224 HEGGCASILFEYNSARL-ISGGQDKSIKLWDTNTG----SLSSTLYGCLGSVLDLAITHDNRSVIAA-SSSNNLYVWDVN 297 (510)
Q Consensus 224 h~~~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~ 297 (510)
....+.+++|++.+..| ++-...+.|..+++... .....+.........+++.+.+..|+.+ ...+.|.+.++.
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 44578899999865554 55556788999998752 2222233344567889999855555544 567899999987
Q ss_pred CCCeeEeecCCCCceEEEEEecCCCCEEEEEeC-CCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEE-ecCCCc
Q 010470 298 SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY-DRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFS-GHIDGN 374 (510)
Q Consensus 298 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~-~~~dg~ 374 (510)
.......+.........+++.|..+.++++-.. .+.|...++........+... ..++.++++|++..|+. -...+.
T Consensus 190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~ 269 (400)
T 3p5b_L 190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 269 (400)
T ss_dssp TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE
Confidence 655444444445567899999844544444422 478999998643322222222 45899999987766654 456778
Q ss_pred EEEEECCCCceeeeecc-cccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEee
Q 010470 375 LRLWDIQTGKLLSEVAA-HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLR 433 (510)
Q Consensus 375 i~i~d~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 433 (510)
|..+|+........... .......++++. .+.++++....+.|..+|..+++....+.
T Consensus 270 I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 270 ISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 99999864433222222 112456677773 34566666677889999977776665554
No 290
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.69 E-value=2.5e-05 Score=70.14 Aligned_cols=205 Identities=8% Similarity=0.107 Sum_probs=130.5
Q ss_pred ccccccceEEEEEecCCCEEEEee-CCCeEEEEeCCCCccee-cccc----c--ccceeEEEE---ecCCCEEEEEe---
Q 010470 221 INAHEGGCASILFEYNSARLISGG-QDKSIKLWDTNTGSLSS-TLYG----C--LGSVLDLAI---THDNRSVIAAS--- 286 (510)
Q Consensus 221 ~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~-~~~~----~--~~~v~~~~~---~~~~~~l~~~~--- 286 (510)
+.+...-.-++.|++....|+.++ ..+.|..|+...+.... .+.+ . ...+..+.| .|+++++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 344445566889988666666665 78999999998654322 2222 1 114578999 68877776544
Q ss_pred ----------CCCeEEEEEcC---CCCeeEeec--CC-----------CCceEEEEEecCCCCEEEEEeCC-CcEEEEEC
Q 010470 287 ----------SSNNLYVWDVN---SGRVRHTLT--GH-----------TDKVCAVDVSKISSRHVVSAAYD-RTLKVWDL 339 (510)
Q Consensus 287 ----------~d~~i~iwd~~---~~~~~~~~~--~~-----------~~~v~~i~~~~~~~~~l~s~~~d-g~i~iwd~ 339 (510)
.+..|..||+. +++.+.... .. ......+++.+ +++..++++.. +.|..++.
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSA 166 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeC
Confidence 26789999999 787665443 11 12477899988 78888888888 88888887
Q ss_pred CCCeEeeeee-ec------CceeEEEEcCCCCEEEEecCCCcEEEEECCCCcee-eeec--cc--ccccEEEE-EEcCCC
Q 010470 340 HKGYCVNTII-FH------SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL-SEVA--AH--SLAAVTSI-SLSRSG 406 (510)
Q Consensus 340 ~~~~~~~~~~-~~------~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~--~~--~~~~i~~i-~~~~~~ 406 (510)
... .+..+. .. ...+.|+++|+|+.|++....|.|..+|+...... .... +. .......| ..-.+|
T Consensus 167 dG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G 245 (334)
T 2p9w_A 167 DGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGN 245 (334)
T ss_dssp TSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETT
T ss_pred CCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCC
Confidence 643 222221 11 12679999999999888877999999998743220 1111 11 11233443 333467
Q ss_pred CE-EEEEecCCcEEEEEcCCce
Q 010470 407 NI-ILTSGRDNLHNLFDIRSLE 427 (510)
Q Consensus 407 ~~-l~~~~~d~~i~i~d~~~~~ 427 (510)
+. +++....+.+.+.+...++
T Consensus 246 ~vllV~~~~~~~~~l~S~DgW~ 267 (334)
T 2p9w_A 246 ESVLVGARAPYAISFRSWDNWK 267 (334)
T ss_dssp EEEEEEEETTEEEEEECSSTTS
T ss_pred EEEEEEcCCCCEEEEECCCCcc
Confidence 77 4445556666666655433
No 291
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.69 E-value=6.2e-05 Score=75.53 Aligned_cols=230 Identities=8% Similarity=-0.035 Sum_probs=144.8
Q ss_pred EEEEeeCCCeEEEEeCCCCcceeccc-ccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCCCCeeEeecCCCCceEEEE
Q 010470 239 RLISGGQDKSIKLWDTNTGSLSSTLY-GCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRVRHTLTGHTDKVCAVD 316 (510)
Q Consensus 239 ~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~ 316 (510)
+|+.+ ..+.|+..++.+......+. ..-..+..++|++.+..|+.+. .++.|+.+++........+........+++
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 44433 35678889987654433222 2235678999999877777665 678999999876544444443334577888
Q ss_pred EecCCCCEEEEEeCCCcEEEEECCCCeEeeee-eecCceeEEEEcCCCCEEEEec--CCCcEEEEECCCCceeeeecccc
Q 010470 317 VSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI-IFHSNCNALAFSMDGQTIFSGH--IDGNLRLWDIQTGKLLSEVAAHS 393 (510)
Q Consensus 317 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~ 393 (510)
+.+..++++++-...+.|.+.++........+ ..-..+..++++|....|+... ..+.|...++..... ..+.. .
T Consensus 87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~-~ 164 (628)
T 4a0p_A 87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVP-N 164 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEEC-S
T ss_pred EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEEC-C
Confidence 88755666677667789999998654322222 2224589999998555555433 357888888754433 33322 2
Q ss_pred cccEEEEEEcCCCCEEEEE-ecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc
Q 010470 394 LAAVTSISLSRSGNIILTS-GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA 472 (510)
Q Consensus 394 ~~~i~~i~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 472 (510)
...+..|++++++..|+.+ ...+.|..+|+..... ..+...... ...+++.. +.++++-...+.|...|..++
T Consensus 165 ~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~----P~glav~~-~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 165 VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPH----PFGLTQYQ-DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSC----EEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCC----ceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence 3678999999976665555 4567899999876443 222221111 12355554 455566666888999997766
Q ss_pred ceeec
Q 010470 473 DIVRT 477 (510)
Q Consensus 473 ~~~~~ 477 (510)
+....
T Consensus 239 ~~~~~ 243 (628)
T 4a0p_A 239 QNRTI 243 (628)
T ss_dssp CSCEE
T ss_pred CceEE
Confidence 54433
No 292
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.69 E-value=2.4e-05 Score=80.33 Aligned_cols=228 Identities=10% Similarity=0.021 Sum_probs=140.0
Q ss_pred CCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCCC----CeeEeecCCCCceEEEEEecC
Q 010470 246 DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSG----RVRHTLTGHTDKVCAVDVSKI 320 (510)
Q Consensus 246 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~ 320 (510)
...|+..++........+ .....+..++|++.+..|+.+. ..+.|+.+++... .....+........+|++.+.
T Consensus 403 ~~~Ir~i~l~~~~~~~l~-~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~ 481 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 481 (791)
T ss_dssp BSSEEEECTTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred ccceeEeeccCCcceeee-cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence 345777777655443333 3355678899998666666554 5678999988753 223334434456778999885
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEeeeeee-cCceeEEEEcCCCCEEEEec-CC-CcEEEEECCCCceeeeecccccccE
Q 010470 321 SSRHVVSAAYDRTLKVWDLHKGYCVNTIIF-HSNCNALAFSMDGQTIFSGH-ID-GNLRLWDIQTGKLLSEVAAHSLAAV 397 (510)
Q Consensus 321 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~~~~~~~~~~~i 397 (510)
.++++++-...+.|.+.++........+.. ...+..|+++|.+..|+... .. +.|.+.++. |.....+.......+
T Consensus 482 ~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d-G~~~~~lv~~~l~~P 560 (791)
T 3m0c_C 482 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWP 560 (791)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCE
T ss_pred CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC-CCceEEEEeCCCCCc
Confidence 566777777789999999975443333222 24589999999755555443 33 789999985 444444433333679
Q ss_pred EEEEEcCCCCEEEEE-ecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceee
Q 010470 398 TSISLSRSGNIILTS-GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVR 476 (510)
Q Consensus 398 ~~i~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 476 (510)
..|++++.+..|+.+ ...+.|..+++........+.... .... ...+++. .+.++++-...+.|...+..+|+.+.
T Consensus 561 ~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~-~l~~-P~glav~-~~~lYwtD~~~~~I~~~dk~tG~~~~ 637 (791)
T 3m0c_C 561 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK-RLAH-PFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVN 637 (791)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTT-TTSS-EEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred eEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCC-ccCC-CCEEEEe-CCEEEEEECCCCEEEEEeCCCCcceE
Confidence 999999876666555 455789999987544433332211 1111 1124442 33455555667889988877776554
Q ss_pred cc
Q 010470 477 TL 478 (510)
Q Consensus 477 ~~ 478 (510)
.+
T Consensus 638 ~l 639 (791)
T 3m0c_C 638 LL 639 (791)
T ss_dssp EE
T ss_pred Ee
Confidence 44
No 293
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.66 E-value=2.1e-06 Score=87.43 Aligned_cols=232 Identities=14% Similarity=0.059 Sum_probs=132.6
Q ss_pred cceEEEEEecCCCEEEEeeC-CCeEEEEeCCCCcceeccccccc-ceeEEEEecCCCEEEEEe-CC-----CeEEEEEcC
Q 010470 226 GGCASILFEYNSARLISGGQ-DKSIKLWDTNTGSLSSTLYGCLG-SVLDLAITHDNRSVIAAS-SS-----NNLYVWDVN 297 (510)
Q Consensus 226 ~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~-~d-----~~i~iwd~~ 297 (510)
....++++.++|.+++.||. ++.+.+||..+++-...-..+.. .-.+++..++++.++.|+ .+ ..+.+||..
T Consensus 243 ~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 243 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred CccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence 34456778889999999984 55899999887654322111111 123456667999999988 34 479999998
Q ss_pred CCCeeEee----cCCCCceEEEEEecCCCCEEEEEeCC---------CcEEEEECCCCeEeeeeeecC----------ce
Q 010470 298 SGRVRHTL----TGHTDKVCAVDVSKISSRHVVSAAYD---------RTLKVWDLHKGYCVNTIIFHS----------NC 354 (510)
Q Consensus 298 ~~~~~~~~----~~~~~~v~~i~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~----------~i 354 (510)
+++....- ......-....+.. ++..++.|+.+ ..+..||..+........... ..
T Consensus 323 t~~W~~~~~~~~~p~~~~~~~~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~ 401 (656)
T 1k3i_A 323 SKTWTSLPNAKVNPMLTADKQGLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCG 401 (656)
T ss_dssp TTEEEEETTSCSGGGCCCCTTGGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTC
T ss_pred CCcceeCCCccccccccccccceeec-CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCC
Confidence 76533220 00000000001112 34445555444 356788888765443322111 12
Q ss_pred eEEEEc-CCCCEEEEecCCC-----------cEEEEECCCCceeeee--cccccccEEEEEEcCCCCEEEEEecC-----
Q 010470 355 NALAFS-MDGQTIFSGHIDG-----------NLRLWDIQTGKLLSEV--AAHSLAAVTSISLSRSGNIILTSGRD----- 415 (510)
Q Consensus 355 ~~i~~~-~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d----- 415 (510)
.++.+. .+++++++|+.++ .|.+||..+..-.... ..+....-.+....|+|++++.|+.+
T Consensus 402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~ 481 (656)
T 1k3i_A 402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF 481 (656)
T ss_dssp EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCc
Confidence 334443 3777888887543 6788888776543332 12221223455677899999999854
Q ss_pred ------CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC
Q 010470 416 ------NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA 460 (510)
Q Consensus 416 ------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 460 (510)
..+.+||..+.+-.. +.. ............+.|+|+.++.|+.
T Consensus 482 ~~~~~~~~v~~ydp~t~~W~~-~~~-~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 482 EDSTPVFTPEIYVPEQDTFYK-QNP-NSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCSBCCCCEEEEGGGTEEEE-CCC-CSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCcccceEEEcCCCCceee-cCC-CCCccccccHhhcCCCcEEEecCCC
Confidence 468999998755332 111 1111112223556799999999985
No 294
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.64 E-value=1.7e-05 Score=71.87 Aligned_cols=193 Identities=16% Similarity=0.291 Sum_probs=127.7
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecC---CCC---EEE-EEeC--CCcEEEEEC--CCCeEee
Q 010470 278 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKI---SSR---HVV-SAAY--DRTLKVWDL--HKGYCVN 346 (510)
Q Consensus 278 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~---~~~---~l~-s~~~--dg~i~iwd~--~~~~~~~ 346 (510)
....++.....+-+.+||+ +|+.+..+.. +.++.+.+-|. ++. +++ +.-. +++|.+|++ .++. +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 4456666777889999999 7998888864 56777777661 111 233 3333 578999966 3443 43
Q ss_pred eee-------ec-CceeEEEE--cCC-CC-EEEEecCCCcEEEEECC-------CCceeeeecccccccEEEEEEcCCCC
Q 010470 347 TII-------FH-SNCNALAF--SMD-GQ-TIFSGHIDGNLRLWDIQ-------TGKLLSEVAAHSLAAVTSISLSRSGN 407 (510)
Q Consensus 347 ~~~-------~~-~~i~~i~~--~~~-~~-~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~~i~~i~~~~~~~ 407 (510)
.+. .. ..+..+|+ +|. +. ++++...+|.+..|++. +.+.+..+... +.+..+..++...
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg--sq~EgcvvDd~~g 192 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN--SQTEGMAADDEYG 192 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS--SCEEEEEEETTTT
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC--CCcceEEEcCCCC
Confidence 331 11 45777888 774 44 67788888999999882 33566777765 6788999999999
Q ss_pred EEEEEecCCcEEEEEcC-----CceeeeEeecCCCeeecCceeEEE--cCCCC-EEEEEc-CCCeEEEEeCC-Ccceeec
Q 010470 408 IILTSGRDNLHNLFDIR-----SLEVCGSLRATGNRVASNWSRSCI--SPDES-YVAAGS-ADGSVYIWSIS-KADIVRT 477 (510)
Q Consensus 408 ~l~~~~~d~~i~i~d~~-----~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~-~l~~~~-~dg~i~iwd~~-~~~~~~~ 477 (510)
.|+.+-.+.-|..|+.. ++..+..+. ...+...+-.+++ .++|+ ||++++ .++++.+||.. +.+.+..
T Consensus 193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~--~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD--GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp EEEEEETTTEEEEEECSTTSCSCCEEEEEBS--SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred eEEEecccceEEEEeCCcCCCCCceEEEEec--CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence 99999998777777755 234443332 2222223344666 55655 555555 67899999986 5666666
Q ss_pred c
Q 010470 478 L 478 (510)
Q Consensus 478 ~ 478 (510)
+
T Consensus 271 f 271 (355)
T 3amr_A 271 F 271 (355)
T ss_dssp E
T ss_pred E
Confidence 5
No 295
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.64 E-value=4.9e-07 Score=92.18 Aligned_cols=240 Identities=10% Similarity=0.013 Sum_probs=141.5
Q ss_pred CCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCC----CCeeEeecCCCCceEEEEEecC
Q 010470 246 DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNS----GRVRHTLTGHTDKVCAVDVSKI 320 (510)
Q Consensus 246 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~----~~~~~~~~~~~~~v~~i~~~~~ 320 (510)
.+.|+..++.+......+.. ...+..++|++.+..|+.+. ..+.|+.+++.. ......+.........+++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 35788888876655443333 34567899999877777665 567899999875 2222222222234556788764
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEeeeeee-cCceeEEEEcCCCCEEEEec-CC-CcEEEEECCCCceeeeecccccccE
Q 010470 321 SSRHVVSAAYDRTLKVWDLHKGYCVNTIIF-HSNCNALAFSMDGQTIFSGH-ID-GNLRLWDIQTGKLLSEVAAHSLAAV 397 (510)
Q Consensus 321 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~~~~~~~~~~~i 397 (510)
.++++++-...+.|.++++........+.. ...+..++++|.+.+|+... .. +.|.++++.. .....+........
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~l~~~~l~~P 542 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWP 542 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCEESCSSCSSC
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeEEEeCCCCCc
Confidence 566666666678999999875543333322 24578899999655554433 33 7888888743 33333322222567
Q ss_pred EEEEEcCCCCEE-EEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceee
Q 010470 398 TSISLSRSGNII-LTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVR 476 (510)
Q Consensus 398 ~~i~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 476 (510)
..|+|+|++..| ++-...+.|.++++........+... .... ....+++..+ .++++....+.|..++..+++.+.
T Consensus 543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~-~~~~-~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 543 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE-KRLA-HPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVN 619 (699)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCS-SSCS-SCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEE
T ss_pred cEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecC-CcCC-CceEeEEECC-EEEEEeCCCCeEEEEEccCCCceE
Confidence 889999875544 55556678999998753332222211 1111 1112455443 455555667899999988887776
Q ss_pred cccccCcCEEEEEE
Q 010470 477 TLKEHTAPVLSCSW 490 (510)
Q Consensus 477 ~~~~~~~~v~~~~~ 490 (510)
.+......+.+|++
T Consensus 620 ~i~~~~~~P~~i~v 633 (699)
T 1n7d_A 620 LLAENLLSPEDMVL 633 (699)
T ss_dssp CCCTTCSSCCCCCB
T ss_pred EeecCCCCCcEEEE
Confidence 66443333344443
No 296
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.63 E-value=0.00011 Score=73.55 Aligned_cols=160 Identities=7% Similarity=-0.042 Sum_probs=102.3
Q ss_pred cceEEEEEecCCC-EEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeC--CCeEEEEEcCCCCee
Q 010470 226 GGCASILFEYNSA-RLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS--SNNLYVWDVNSGRVR 302 (510)
Q Consensus 226 ~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~ 302 (510)
.....+++++.+. ++++-...+.|.+.+++.......+.........|++.|.+.+|+.+.. .+.|...++......
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~ 163 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF 163 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE
Confidence 5688999999555 4555566789999999754332222244456789999998777776663 457777776643333
Q ss_pred EeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee-ecCceeEEEEcCCCCEEEEecCCCcEEEEECC
Q 010470 303 HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII-FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQ 381 (510)
Q Consensus 303 ~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~ 381 (510)
......-....++++.+.++.++++-...+.|..+|+.......... ....+..+++..+ ..+++....+.|...|..
T Consensus 164 ~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~ 242 (619)
T 3s94_A 164 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKY 242 (619)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESS
T ss_pred EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECC
Confidence 33333445678999998555555665667889999986543322222 1233567787655 555566677889999987
Q ss_pred CCcee
Q 010470 382 TGKLL 386 (510)
Q Consensus 382 ~~~~~ 386 (510)
+++..
T Consensus 243 tg~~~ 247 (619)
T 3s94_A 243 TGEGL 247 (619)
T ss_dssp SCCCC
T ss_pred CCccc
Confidence 76543
No 297
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.62 E-value=0.00048 Score=69.10 Aligned_cols=199 Identities=10% Similarity=-0.001 Sum_probs=127.5
Q ss_pred cceEEEEEecCCCEE-EEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCCCCeeE
Q 010470 226 GGCASILFEYNSARL-ISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRVRH 303 (510)
Q Consensus 226 ~~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~ 303 (510)
..+.+++|++.+..| ++-..++.|..++++.......+.........+++.+.+..|+.+. ..+.|.+.++.......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 457899999865555 5555678999999875543333333334577899988766665554 56789999987544333
Q ss_pred eecCCCCceEEEEEecCCCCEEEEE-eCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEE-EecCCCcEEEEECC
Q 010470 304 TLTGHTDKVCAVDVSKISSRHVVSA-AYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIF-SGHIDGNLRLWDIQ 381 (510)
Q Consensus 304 ~~~~~~~~v~~i~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~dg~i~i~d~~ 381 (510)
.+...-....++++.|..+.++++- +..+.|...++........+..-..++.+++++++..|+ +-...+.|..+|+.
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~d 196 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNML 196 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCC
Confidence 3334445678999998545444443 225788888886443333333335689999999766555 45567789999986
Q ss_pred CCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCce
Q 010470 382 TGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLE 427 (510)
Q Consensus 382 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~ 427 (510)
.... ..+.... ..+.++++.. +.++++....+.|...|..++.
T Consensus 197 G~~~-~v~~~~l-~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 197 GLNR-EVIADDL-PHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp SCSC-EEEEECC-SCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CCce-EEeeccC-CCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 5433 3333222 4566787765 4455555556778887765443
No 298
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.60 E-value=5.9e-05 Score=75.61 Aligned_cols=225 Identities=8% Similarity=0.042 Sum_probs=134.7
Q ss_pred CCeEEEEeCCCCc-ceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCCCCe-eEeecCCCCceEEEEEecCCC
Q 010470 246 DKSIKLWDTNTGS-LSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRV-RHTLTGHTDKVCAVDVSKISS 322 (510)
Q Consensus 246 dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~~~~ 322 (510)
...|+..++.... ....+......+..++|++.+..|+.+. ..+.|..+++..... ...+........++++.+.++
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~ 96 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 96 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTT
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCC
Confidence 4578888887543 2222233345678999999877777665 467899998875532 233333335788999988566
Q ss_pred CEEEEEeCCCcEEEEECCCCeEeeeee--ecCceeEEEEcCCCCEEEEec--CCCcEEEEECCCCceeeeecccccccEE
Q 010470 323 RHVVSAAYDRTLKVWDLHKGYCVNTII--FHSNCNALAFSMDGQTIFSGH--IDGNLRLWDIQTGKLLSEVAAHSLAAVT 398 (510)
Q Consensus 323 ~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~i~ 398 (510)
+++++-...+.|.+.++..... ..+. .-..+..++++|.+..|+... ..+.|...++. |.....+.......+.
T Consensus 97 ~ly~~d~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~~~P~ 174 (619)
T 3s94_A 97 KLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPN 174 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSSEE
T ss_pred EEEEEeCCCCEEEEEECCCCCE-EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEEeCCCCCCc
Confidence 6667767789999999975433 2332 224588999999755555433 24678888874 4333333322336789
Q ss_pred EEEEcCCCCEEEE-EecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeec
Q 010470 399 SISLSRSGNIILT-SGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRT 477 (510)
Q Consensus 399 ~i~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 477 (510)
.|++++++..|+. -...+.|..+|+............. . ....+++..+ ..+++-..++.|...|..+++....
T Consensus 175 Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~---~-~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~ 249 (619)
T 3s94_A 175 GLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSL---P-HPFALTLFED-ILYWTDWSTHSILACNKYTGEGLRE 249 (619)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEESSSCCEEC-------------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred EEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCC---C-CceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEE
Confidence 9999997665554 4556789999987544332222111 1 1123666655 5555556678899999877754433
No 299
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.57 E-value=2.4e-05 Score=70.14 Aligned_cols=202 Identities=11% Similarity=0.039 Sum_probs=127.2
Q ss_pred cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-C-------ceeEEEE---cCCCCEEEEec----
Q 010470 306 TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-S-------NCNALAF---SMDGQTIFSGH---- 370 (510)
Q Consensus 306 ~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~-------~i~~i~~---~~~~~~l~~~~---- 370 (510)
........++.|.+..+.++++.-..++|..||...+......... . .+..+.| .|+++++++..
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a 88 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS 88 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence 3344455678898844555555557999999999766443332111 1 2679999 68887777543
Q ss_pred ---------CCCcEEEEECC---CCceeeeeccc------------ccccEEEEEEcCCCCEEEEEecC-CcEEEEEcCC
Q 010470 371 ---------IDGNLRLWDIQ---TGKLLSEVAAH------------SLAAVTSISLSRSGNIILTSGRD-NLHNLFDIRS 425 (510)
Q Consensus 371 ---------~dg~i~i~d~~---~~~~~~~~~~~------------~~~~i~~i~~~~~~~~l~~~~~d-~~i~i~d~~~ 425 (510)
.+..|..||+. +++.+...... .......++..++|+..++++.. +.|..++...
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG 168 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence 25779999998 78777655421 11358899999999999999888 8888888765
Q ss_pred ceeeeEe-ecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcce--eeccc--c---cCcCEEEE-EEeCCCCc
Q 010470 426 LEVCGSL-RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADI--VRTLK--E---HTAPVLSC-SWSGLGKP 496 (510)
Q Consensus 426 ~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~--~---~~~~v~~~-~~~~~~~~ 496 (510)
......+ ...........+.++++|+|+.|++....|.+..+|+..... +. .. + .-.....+ .--.+|+.
T Consensus 169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~~G~v 247 (334)
T 2p9w_A 169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPVGNES 247 (334)
T ss_dssp CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEETTEE
T ss_pred CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCcccccccccCCEE
Confidence 4322111 111122223456799999999888877799999999874322 11 11 1 11223443 33346666
Q ss_pred -EEEeeCCCeEEE
Q 010470 497 -LASADKNGVVCV 508 (510)
Q Consensus 497 -l~s~~~dg~i~i 508 (510)
|++.+..+.+.+
T Consensus 248 llV~~~~~~~~~l 260 (334)
T 2p9w_A 248 VLVGARAPYAISF 260 (334)
T ss_dssp EEEEEETTEEEEE
T ss_pred EEEEcCCCCEEEE
Confidence 555555555544
No 300
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.53 E-value=0.00017 Score=74.01 Aligned_cols=207 Identities=11% Similarity=-0.009 Sum_probs=127.4
Q ss_pred ccceEEEEEecCCC-EEEEeeCCCeEEEEeCCCC----cceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCC
Q 010470 225 EGGCASILFEYNSA-RLISGGQDKSIKLWDTNTG----SLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNS 298 (510)
Q Consensus 225 ~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~ 298 (510)
...+.+++|++.+. ++++-...+.|+.+++... .....+.........|++.+.+..|+.+. ..+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 34577899998544 4555566788999988753 22222333445667899998886666554 678999999875
Q ss_pred CCeeEeecCCCCceEEEEEecCCCCEEEEEeCC-CcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEE-ecCCCcE
Q 010470 299 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD-RTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFS-GHIDGNL 375 (510)
Q Consensus 299 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~-~~~dg~i 375 (510)
......+........+|++.|..+.++++-... +.|.+.++........+... ..++.|++++.+..|+. -...+.|
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I 582 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 582 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcE
Confidence 544334444455688999999445555544333 78999998644333222222 45899999976665554 4556789
Q ss_pred EEEECCCCceeeeeccc-ccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEe
Q 010470 376 RLWDIQTGKLLSEVAAH-SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 432 (510)
Q Consensus 376 ~i~d~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (510)
..+++........+... ......+|++.. +.++++-...+.|...|..++..+..+
T Consensus 583 ~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 583 SSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 99998544333332221 113456677643 345555556678888887666544444
No 301
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.49 E-value=0.00014 Score=67.53 Aligned_cols=224 Identities=9% Similarity=-0.008 Sum_probs=122.8
Q ss_pred cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe--eEeec---CCCCceEEEEEecC---CCCEEEEEeCC-----CcE
Q 010470 268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV--RHTLT---GHTDKVCAVDVSKI---SSRHVVSAAYD-----RTL 334 (510)
Q Consensus 268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~---~~~~~v~~i~~~~~---~~~~l~s~~~d-----g~i 334 (510)
.....++|.|+|+ ++++..+|.|++++ ++.. +..+. ........++++|. ++.++++.... +.|
T Consensus 31 ~~P~~ia~~pdG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 3567899999998 55556679999998 4432 11111 12356789999993 23444443322 678
Q ss_pred EEEECCCCe-----Ee-eeeee----cCceeEEEEcCCCCEEEEecC-------------CCcEEEEECCCC--------
Q 010470 335 KVWDLHKGY-----CV-NTIIF----HSNCNALAFSMDGQTIFSGHI-------------DGNLRLWDIQTG-------- 383 (510)
Q Consensus 335 ~iwd~~~~~-----~~-~~~~~----~~~i~~i~~~~~~~~l~~~~~-------------dg~i~i~d~~~~-------- 383 (510)
..|+...+. .+ ..+.. ......++|.|+|.++++.+. .|.|..++....
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 888876442 11 11221 123578999999976665432 256777776420
Q ss_pred ----ceeeeecccccccEEEEEEcC-CCCEEEEEecCCcE------EEEEcCCce------------------eeeEeec
Q 010470 384 ----KLLSEVAAHSLAAVTSISLSR-SGNIILTSGRDNLH------NLFDIRSLE------------------VCGSLRA 434 (510)
Q Consensus 384 ----~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i------~i~d~~~~~------------------~~~~~~~ 434 (510)
.....+.... .....++|+| +|.++++-...+.+ .|.-+..+. +...+..
T Consensus 188 ~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~ 266 (352)
T 2ism_A 188 GRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQ 266 (352)
T ss_dssp TCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred CCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCC
Confidence 0111111111 4577899999 66665554433331 122222211 0001100
Q ss_pred CCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcce------eecccccCcCEEEEEEeCCCCcEEEee
Q 010470 435 TGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADI------VRTLKEHTAPVLSCSWSGLGKPLASAD 501 (510)
Q Consensus 435 ~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~s~~ 501 (510)
+ .....++| .+|.++++....+.|...++..... ...+-.....+.++++.|||.++++..
T Consensus 267 ~-----~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 267 G-----FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp C-----CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred C-----CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 0 11233556 4677777776777888887764431 112212235789999999998666543
No 302
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.48 E-value=0.00018 Score=66.90 Aligned_cols=221 Identities=14% Similarity=0.090 Sum_probs=124.3
Q ss_pred cceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc--eecc---cccccceeEEEEecC---CCEEEEEeC-C-----CeE
Q 010470 226 GGCASILFEYNSARLISGGQDKSIKLWDTNTGSL--SSTL---YGCLGSVLDLAITHD---NRSVIAASS-S-----NNL 291 (510)
Q Consensus 226 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~---~~~~~~v~~~~~~~~---~~~l~~~~~-d-----~~i 291 (510)
....+++|.|+|+++++ ..+|.|.+++ ++.. +..+ .........++|+|+ +..|+++.. . +.|
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 45779999999985555 5569999998 3432 1111 122456789999998 556655543 2 678
Q ss_pred EEEEcCCCC-----e-eEeec---CCCCceEEEEEecCCCCEEEEEeC-------------CCcEEEEECCCC-------
Q 010470 292 YVWDVNSGR-----V-RHTLT---GHTDKVCAVDVSKISSRHVVSAAY-------------DRTLKVWDLHKG------- 342 (510)
Q Consensus 292 ~iwd~~~~~-----~-~~~~~---~~~~~v~~i~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~------- 342 (510)
..|+...+. . +..+. +.......+.|.| ++.++++.+. .|.|.-++....
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 888876442 1 11132 1112346789999 6666666432 256777776431
Q ss_pred -----eEeeee-eecCceeEEEEcC-CCCEEEEecCCCc--------EEEEECCCCc------------------eeeee
Q 010470 343 -----YCVNTI-IFHSNCNALAFSM-DGQTIFSGHIDGN--------LRLWDIQTGK------------------LLSEV 389 (510)
Q Consensus 343 -----~~~~~~-~~~~~i~~i~~~~-~~~~l~~~~~dg~--------i~i~d~~~~~------------------~~~~~ 389 (510)
.....+ .....+..++|+| +|.++++-...+. |.+.. .+. ++..+
T Consensus 187 ~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~ 264 (352)
T 2ism_A 187 LGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV--PGGNYGWPRVVGRGNDPRYRDPLYFW 264 (352)
T ss_dssp TTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred cCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec--cCCcCCCCcccCCCCCCCCcCCeEec
Confidence 011111 2234578899999 6776665433332 33332 221 22222
Q ss_pred cccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCcee------eeEeecCCCeeecCceeEEEcCCCCEEEEEc
Q 010470 390 AAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV------CGSLRATGNRVASNWSRSCISPDESYVAAGS 459 (510)
Q Consensus 390 ~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 459 (510)
. ++ ..+..++| .+|.++++....+.|...++..... ...+... ...+..+++.|||.++++..
T Consensus 265 ~-~~-~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~----~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 265 P-QG-FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG----FGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp T-TC-CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES----SCCEEEEEECTTSCEEEEEC
T ss_pred C-CC-CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc----CCCeeEEEECCCCcEEEEEe
Confidence 1 12 45677887 4677777666777888877764321 1111111 12344588899987766654
No 303
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.45 E-value=0.00052 Score=63.72 Aligned_cols=228 Identities=13% Similarity=0.078 Sum_probs=128.0
Q ss_pred ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc-ceecc---cccccceeEEEEecC---CCEEEEEeC----C----C
Q 010470 225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGS-LSSTL---YGCLGSVLDLAITHD---NRSVIAASS----S----N 289 (510)
Q Consensus 225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~---~~~~~~v~~~~~~~~---~~~l~~~~~----d----~ 289 (510)
-....+++|.|+|+++++ ..+|.|.+++. ++. .+..+ .........|+|+|+ +..|+++.. + +
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 345789999999975554 55699999974 444 22211 122356789999998 555655543 3 5
Q ss_pred eEEEEEcCCC--C-----ee-EeecC-CCCceEEEEEecCCCCEEEEEeC-------------CCcEEEEECCCCe----
Q 010470 290 NLYVWDVNSG--R-----VR-HTLTG-HTDKVCAVDVSKISSRHVVSAAY-------------DRTLKVWDLHKGY---- 343 (510)
Q Consensus 290 ~i~iwd~~~~--~-----~~-~~~~~-~~~~v~~i~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~~---- 343 (510)
.|..|+...+ . .+ ..+.. .......+.|.| ++.++++.+. .|.|.-++....-
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n 184 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN 184 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence 7888887654 1 11 11221 112346788998 6776666432 2566666664220
Q ss_pred ---Eeeee-eecCceeEEEEcC-CCCEEEEecCCC---cEEEEECCC--------C--------ceeeeecccccccEEE
Q 010470 344 ---CVNTI-IFHSNCNALAFSM-DGQTIFSGHIDG---NLRLWDIQT--------G--------KLLSEVAAHSLAAVTS 399 (510)
Q Consensus 344 ---~~~~~-~~~~~i~~i~~~~-~~~~l~~~~~dg---~i~i~d~~~--------~--------~~~~~~~~~~~~~i~~ 399 (510)
....+ .....+..++|+| +|.++++-...+ .|.+..... + .++..+...+ ..+..
T Consensus 185 pf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~-~ap~G 263 (354)
T 3a9g_A 185 PFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSET-WAPSG 263 (354)
T ss_dssp SSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCC-CCEEE
T ss_pred CCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCC-cCCcc
Confidence 01111 2334578999999 677666543322 243332110 0 1222221122 56888
Q ss_pred EEEc-------CCCCEEEEEecCCcEEEEEcCCc-eee--eEeecCCCeeecCceeEEEcCCCCEEEEEc
Q 010470 400 ISLS-------RSGNIILTSGRDNLHNLFDIRSL-EVC--GSLRATGNRVASNWSRSCISPDESYVAAGS 459 (510)
Q Consensus 400 i~~~-------~~~~~l~~~~~d~~i~i~d~~~~-~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 459 (510)
+.|. .+|.++++....+.|..+++... ... ..+... ....+..+++.|||.+.++..
T Consensus 264 ~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~---~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 264 ASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKN---VFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTT---TSCCEEEEEECTTSCEEEEEC
T ss_pred eEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccC---CCCCeeEEEECCCCcEEEEEe
Confidence 8884 56777777777788988888753 222 122111 012344588899987666654
No 304
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.44 E-value=6.2e-05 Score=68.44 Aligned_cols=226 Identities=14% Similarity=0.129 Sum_probs=119.9
Q ss_pred CCCEEEEee-CC-----CeEEEEeCCCCccee--cccccccceeEEEEecCCCEEEEEeCC-----CeEEEEEcCCCC--
Q 010470 236 NSARLISGG-QD-----KSIKLWDTNTGSLSS--TLYGCLGSVLDLAITHDNRSVIAASSS-----NNLYVWDVNSGR-- 300 (510)
Q Consensus 236 ~~~~l~s~~-~d-----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~-- 300 (510)
++.+++.|+ .+ ..+.+||+.+++-.. .+...... ..+...++..++.|+.+ ..+.+||+.+++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRY--VASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBS--CEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhcc--ccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 345666666 32 368889987765322 11111111 11222366777777754 468999988766
Q ss_pred -eeEe--ecCCCCceEEEEEecCCCCEEEEEeCC-----CcEEEEECCCCeEeeeeeecCc--eeEEEEcCCCCEEEEec
Q 010470 301 -VRHT--LTGHTDKVCAVDVSKISSRHVVSAAYD-----RTLKVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFSGH 370 (510)
Q Consensus 301 -~~~~--~~~~~~~v~~i~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~ 370 (510)
-... +....... ++... ++.+++.|+.+ ..+.+||+.+++....-..+.. -.+++. .++..++.|+
T Consensus 92 ~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG 167 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLA-GATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGG 167 (301)
T ss_dssp CCEEECCCSSCCBSC-EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECC
T ss_pred eeEECCCCCCCccce-eEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECC
Confidence 3222 11111111 22222 56777777654 3688999988765443322221 122222 2677777776
Q ss_pred CC-----CcEEEEECCCCceeeeeccccc-ccEEEEEEcCCCCEEEEEecC-----CcEEEEEcCCceeeeEeecCCCee
Q 010470 371 ID-----GNLRLWDIQTGKLLSEVAAHSL-AAVTSISLSRSGNIILTSGRD-----NLHNLFDIRSLEVCGSLRATGNRV 439 (510)
Q Consensus 371 ~d-----g~i~i~d~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~ 439 (510)
.+ ..+.+||+.+.+-...-..... .....+.+ ++.+++.|+.+ ..+.+||+.+..-...-..+....
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 245 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRC 245 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccc
Confidence 54 4589999877653322111110 11222222 56777777764 468999998765433221111111
Q ss_pred ecCceeEEEcCCCCEEEEEcCC-----CeEEEEeCCCcc
Q 010470 440 ASNWSRSCISPDESYVAAGSAD-----GSVYIWSISKAD 473 (510)
Q Consensus 440 ~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 473 (510)
.. .+...++.+++.|+.+ ..|.+||+.+.+
T Consensus 246 --~~--~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 246 --YV--GATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp --SC--EEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred --ce--eEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 11 2223367777887765 357888887643
No 305
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.43 E-value=2.6e-05 Score=80.58 Aligned_cols=192 Identities=10% Similarity=0.077 Sum_probs=107.3
Q ss_pred ceEEEEEe-cCCCCEEEEE-eCCC----cEEEEECCCC-eEeeeeeecCceeEEEEcCCCCEEEEecCC-----CcEEEE
Q 010470 311 KVCAVDVS-KISSRHVVSA-AYDR----TLKVWDLHKG-YCVNTIIFHSNCNALAFSMDGQTIFSGHID-----GNLRLW 378 (510)
Q Consensus 311 ~v~~i~~~-~~~~~~l~s~-~~dg----~i~iwd~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~i~ 378 (510)
.+....|+ | +++.|+.+ +.+| .|+++|+.++ ..+... .......+.|+|||+.|+....+ ..|+++
T Consensus 175 ~~~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~-~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 175 DVMEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK-VSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC-EEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred EEeeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc-ccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence 56778999 8 67666543 3333 4999999988 632211 11124578999999888766554 258888
Q ss_pred ECCCCce--eeeecccccccEEEEEEcCCCCEEEEEec---CCcEEEEEcCCce-ee--eEeecCCCeeecCceeEEEcC
Q 010470 379 DIQTGKL--LSEVAAHSLAAVTSISLSRSGNIILTSGR---DNLHNLFDIRSLE-VC--GSLRATGNRVASNWSRSCISP 450 (510)
Q Consensus 379 d~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---d~~i~i~d~~~~~-~~--~~~~~~~~~~~~~~~~~~~s~ 450 (510)
++.++.. ...+.........++.|+|||++|+..+. ...|.++|+.++. .. ..+..... .....+.|+.
T Consensus 253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~---~~~~s~~~~~ 329 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK---GVRYDVQMHG 329 (751)
T ss_dssp ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCT---TCCEEEEEET
T ss_pred ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCC---CceEEEeeee
Confidence 9877642 22222222244678899999998887653 3468888987652 11 22211111 1111123333
Q ss_pred CCCEEE-EEcCC----CeEEEEeCCCcceeec-ccccCc--CEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 451 DESYVA-AGSAD----GSVYIWSISKADIVRT-LKEHTA--PVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 451 ~~~~l~-~~~~d----g~i~iwd~~~~~~~~~-~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
|..|+ ....+ ..|..+++.++..... +-.+.. .+.++.+. .+.++++...+|...+|
T Consensus 330 -g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 330 -TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp -TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEE
T ss_pred -CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence 55444 44333 3677778765322222 222332 34555654 23345566667765554
No 306
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.40 E-value=0.00084 Score=72.08 Aligned_cols=278 Identities=17% Similarity=0.158 Sum_probs=153.6
Q ss_pred ccceEEEEEecC------CCEEEEeeC-CCeEEEEeCCCCcceeccc-ccccceeEEEEe--cCCCEEEEEeCCCeEEEE
Q 010470 225 EGGCASILFEYN------SARLISGGQ-DKSIKLWDTNTGSLSSTLY-GCLGSVLDLAIT--HDNRSVIAASSSNNLYVW 294 (510)
Q Consensus 225 ~~~v~~~~~s~~------~~~l~s~~~-dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~~~~d~~i~iw 294 (510)
.+.|.|+++.|. +.+++.|.. |++|+|+++++.+.+.... +......++.+. ....+|.+|-.||.+.-+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 457999999863 368999997 9999999998765543221 111233444433 234578888899988666
Q ss_pred EcC--CCCeeEe--ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCcee-EEEEcCC--CCEEE
Q 010470 295 DVN--SGRVRHT--LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCN-ALAFSMD--GQTIF 367 (510)
Q Consensus 295 d~~--~~~~~~~--~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~-~i~~~~~--~~~l~ 367 (510)
.++ +|..... ..-...++.-..+...+...++++| +....+|--. ++....-.....+. ...|+.. ..-++
T Consensus 633 ~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~v 710 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSLA 710 (1158)
T ss_dssp EECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEEE
T ss_pred EEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCcEE
Confidence 554 4543321 1112345544444332233344444 4444455433 33221111112232 2334321 22344
Q ss_pred EecCCCcEEEEECCCCce--eeeecccccccEEEEEEcCCCCEEEEEecC------------------------------
Q 010470 368 SGHIDGNLRLWDIQTGKL--LSEVAAHSLAAVTSISLSRSGNIILTSGRD------------------------------ 415 (510)
Q Consensus 368 ~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------------------------------ 415 (510)
..+ ++.++|..+..... +.++... ..+..++++|..+.++++..+
T Consensus 711 ~~~-~~~LrI~~i~~~~~~~~~~ipL~--~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1158)
T 3ei3_A 711 LAN-NSTLTIGTIDEIQKLHIRTVPLY--ESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSK 787 (1158)
T ss_dssp EEC-SSCEEEEEECCSSSEEEEEEECS--SEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCC
T ss_pred EEc-CCceEEEEecccCCeeEEEEeCC--CCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccc
Confidence 333 34588887754332 2333333 577888888877755443311
Q ss_pred -------------------CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCC-CCEEEEEc----------CCCeEE
Q 010470 416 -------------------NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD-ESYVAAGS----------ADGSVY 465 (510)
Q Consensus 416 -------------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~----------~dg~i~ 465 (510)
+.|+++|..+++.+..+....+.....+..+.|..+ ..+|++|+ ..|.|+
T Consensus 788 ~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~ 867 (1158)
T 3ei3_A 788 LFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIV 867 (1158)
T ss_dssp CC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEE
T ss_pred cccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEE
Confidence 246778888888777776666655443433444433 47888886 358899
Q ss_pred EEeCCCcceeeccc-ccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470 466 IWSISKADIVRTLK-EHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510 (510)
Q Consensus 466 iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 510 (510)
+|++..++...... ...++|++++-- +|..|++. ..+|++|+
T Consensus 868 vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~ 910 (1158)
T 3ei3_A 868 VFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYE 910 (1158)
T ss_dssp EEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEE
T ss_pred EEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEE
Confidence 99987544322211 246788888744 35444433 46788774
No 307
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.34 E-value=5.7e-06 Score=84.36 Aligned_cols=206 Identities=11% Similarity=0.017 Sum_probs=125.0
Q ss_pred cceEEEEEecCCCEEEEe-eCCCeEEEEeCCC----CcceecccccccceeEEEEecCCCEEEEE-eCCCeEEEEEcCCC
Q 010470 226 GGCASILFEYNSARLISG-GQDKSIKLWDTNT----GSLSSTLYGCLGSVLDLAITHDNRSVIAA-SSSNNLYVWDVNSG 299 (510)
Q Consensus 226 ~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~ 299 (510)
..+.+++|++.+..|+.+ ...+.|..+++.+ ......+.........|++.+.+..|+.+ ...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 456788999876666554 4567899999875 22222222222345678888655544444 56788999998755
Q ss_pred CeeEeecCCCCceEEEEEecCCCCEEEEEeCC-CcEEEEECCCCeEeeeee--ecCceeEEEEcCCCC-EEEEecCCCcE
Q 010470 300 RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD-RTLKVWDLHKGYCVNTII--FHSNCNALAFSMDGQ-TIFSGHIDGNL 375 (510)
Q Consensus 300 ~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~--~~~~i~~i~~~~~~~-~l~~~~~dg~i 375 (510)
.....+.........+++.|..+.++++-... +.|.++++... ....+. .-..++.|+|+|++. ++++-...+.|
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I 564 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 564 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeE
Confidence 44333333334567888988545555544333 78888887532 222221 123478899998654 55566667889
Q ss_pred EEEECCCCceeeeecc--cccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeec
Q 010470 376 RLWDIQTGKLLSEVAA--HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRA 434 (510)
Q Consensus 376 ~i~d~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 434 (510)
.++|+.... ...+.. ........|++..+ .++++....+.|..++..+++.+..+..
T Consensus 565 ~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 565 SSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp EEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred EEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 999986432 222221 11133455666553 4555666678999999888877766643
No 308
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.33 E-value=0.00096 Score=61.90 Aligned_cols=226 Identities=13% Similarity=0.044 Sum_probs=126.3
Q ss_pred cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC-eeEeec---CCCCceEEEEEecC---CCCEEEEEeC---C----Cc
Q 010470 268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR-VRHTLT---GHTDKVCAVDVSKI---SSRHVVSAAY---D----RT 333 (510)
Q Consensus 268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~---~~~~~v~~i~~~~~---~~~~l~s~~~---d----g~ 333 (510)
.....++|.|+|+ |+++..+|.|++++ .+++ .+..+. ........++++|. ++.++++-+. + +.
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 4567899999997 55566679999997 4454 222211 12356789999983 2444444332 3 57
Q ss_pred EEEEECCCC--e-----Ee-eeeee--cCceeEEEEcCCCCEEEEecC-------------CCcEEEEECCCCce-----
Q 010470 334 LKVWDLHKG--Y-----CV-NTIIF--HSNCNALAFSMDGQTIFSGHI-------------DGNLRLWDIQTGKL----- 385 (510)
Q Consensus 334 i~iwd~~~~--~-----~~-~~~~~--~~~i~~i~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~~----- 385 (510)
|..|+...+ . .+ ..+.. ......+.|.|+|.++++.+. .|.|..++.. ++.
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~np 185 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPADNP 185 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTTSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCCCCC
Confidence 888887644 1 11 11221 123678999999987776432 2567777653 321
Q ss_pred ---eeeecccccccEEEEEEcC-CCCEEEEEecCC---cEEEEEcCC--------c--------eeeeEeecCCCeeecC
Q 010470 386 ---LSEVAAHSLAAVTSISLSR-SGNIILTSGRDN---LHNLFDIRS--------L--------EVCGSLRATGNRVASN 442 (510)
Q Consensus 386 ---~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~---~i~i~d~~~--------~--------~~~~~~~~~~~~~~~~ 442 (510)
...+.... .....++|+| +|.++++-...+ .|.+..... + .+...+. .....
T Consensus 186 f~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~----~~~~a 260 (354)
T 3a9g_A 186 FPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTG----SETWA 260 (354)
T ss_dssp STTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT----TCCCC
T ss_pred CCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecC----CCCcC
Confidence 11121111 4567899999 666555543322 233322110 0 0011110 00112
Q ss_pred ceeEEE-------cCCCCEEEEEcCCCeEEEEeCCCc-cee--ec-ccccCcCEEEEEEeCCCCcEEEee
Q 010470 443 WSRSCI-------SPDESYVAAGSADGSVYIWSISKA-DIV--RT-LKEHTAPVLSCSWSGLGKPLASAD 501 (510)
Q Consensus 443 ~~~~~~-------s~~~~~l~~~~~dg~i~iwd~~~~-~~~--~~-~~~~~~~v~~~~~~~~~~~l~s~~ 501 (510)
...++| ..+|.++++....+.|...++... ... .. +.+....+.++++.|||.+.++..
T Consensus 261 p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 261 PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 344666 357888887777888999888753 221 12 222245789999999997666654
No 309
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.32 E-value=0.0013 Score=60.44 Aligned_cols=231 Identities=13% Similarity=0.097 Sum_probs=125.0
Q ss_pred ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc---ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe
Q 010470 225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY---GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV 301 (510)
Q Consensus 225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 301 (510)
...+.+|.|++ +. ++.++..|.|.. ..+.|+.-..+. .+.+.+..+.+.+++..++++ .+|.|.. ..+.|+.
T Consensus 79 ~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-TE-EEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred CccEEEEEecC-Ce-EEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCC
Confidence 44688999986 44 444455665544 333343322221 233457788887777655544 4565433 2233432
Q ss_pred e-EeecCCCCceEEEEEecCCCCEEEEEeCCCcEEE-EEC--CCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEE
Q 010470 302 R-HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV-WDL--HKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRL 377 (510)
Q Consensus 302 ~-~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~i-wd~--~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i 377 (510)
- .....+...+..+.+.+ ++.+++.+. +|.+.. +|- .+-+.+. ......+..+.+.+++..++++ .+|.+++
T Consensus 154 W~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g~~~~~~-~~G~~~~ 229 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTPDGRLWMIV-NGGKIAF 229 (327)
T ss_dssp EEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCEEEE-CCSSSCEEEEEECTTSCEEEEE-TTTEEEE
T ss_pred CEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCceeECC-CCCCCccceeEECCCCCEEEEe-CCceEEE
Confidence 2 22234556788999988 566665554 555544 332 1112221 1223457888899988766554 5677777
Q ss_pred EECCCCceeeeeccc---ccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCE
Q 010470 378 WDIQTGKLLSEVAAH---SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESY 454 (510)
Q Consensus 378 ~d~~~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 454 (510)
.+...++.-..+... ....+.++.+.+++.+++++. ++.+ ++....++.-..+.... .....+..+.+.+++.
T Consensus 230 s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~-~~~~~~~~v~~~~~~~- 305 (327)
T 2xbg_A 230 SDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVK-KVPSNFYKILFFSPDQ- 305 (327)
T ss_dssp EETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGT-TSSSCCCEEEEEETTE-
T ss_pred ecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccC-CCCCCeEEEEEECCCc-
Confidence 643334433333221 113588999998877666654 6666 34444444333332211 1112334477765555
Q ss_pred EEEEcCCCeEEEEe
Q 010470 455 VAAGSADGSVYIWS 468 (510)
Q Consensus 455 l~~~~~dg~i~iwd 468 (510)
+++++.+|.|.-++
T Consensus 306 ~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 306 GFILGQKGILLRYV 319 (327)
T ss_dssp EEEECSTTEEEEEC
T ss_pred eEEEcCCceEEEEc
Confidence 55566688877665
No 310
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.31 E-value=0.004 Score=64.51 Aligned_cols=267 Identities=13% Similarity=0.129 Sum_probs=149.7
Q ss_pred ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEe
Q 010470 225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT 304 (510)
Q Consensus 225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 304 (510)
...|.++....+| .|..|+.+| +..||..+.............|.++.. .++ .|..++.+ .+..||..+++....
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~ 136 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSF 136 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEE
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEe
Confidence 3568898888776 666777665 789998876543211112335666654 355 46666665 688899876654322
Q ss_pred ec----CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee------cCceeEEEEcCCCCEEEEecCCCc
Q 010470 305 LT----GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF------HSNCNALAFSMDGQTIFSGHIDGN 374 (510)
Q Consensus 305 ~~----~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~i~~i~~~~~~~~l~~~~~dg~ 374 (510)
.. .....|.++...+ ++. +..++.+ .+..+|..++........ ...|.++...+++..|.+|+. +-
T Consensus 137 ~~~~~~l~~~~i~~i~~d~-~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~G 212 (758)
T 3ott_A 137 DTRRNGLPNNTIYSIIRTK-DNQ-IYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GY 212 (758)
T ss_dssp CHHHHCCSCSCEEEEEECT-TCC-EEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EE
T ss_pred ccCCCCcCCCeEEEEEEcC-CCC-EEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CC
Confidence 11 1234677777655 444 4455544 588899877654322111 113778887777776666764 46
Q ss_pred EEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCC---CeeecCceeEEEcCC
Q 010470 375 LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATG---NRVASNWSRSCISPD 451 (510)
Q Consensus 375 i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~ 451 (510)
+..||..+++... +.......|.++...++|.+.+.. . +-+.+++..+........... ......+.++....+
T Consensus 213 l~~~~~~~~~~~~-~~~l~~~~i~~i~~d~~g~lWigT-~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~ 289 (758)
T 3ott_A 213 LFQYFPSTGQIKQ-TEAFHNNSIKSLALDGNGDLLAGT-D-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQE 289 (758)
T ss_dssp EEEEETTTTEEEE-EEEEEEEEEEEEEECTTCCEEEEE-T-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTT
T ss_pred CeEEcCCCCeEEe-ccCCCCCeEEEEEEcCCCCEEEEe-C-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCC
Confidence 8889987765432 221112568889888888766654 4 457788877654322211111 111223445666777
Q ss_pred CCEEEEEcCCCeEEEEeCCCcceeecc---c--ccCcCEEEEEEeCCCCcEEEeeCCCeE
Q 010470 452 ESYVAAGSADGSVYIWSISKADIVRTL---K--EHTAPVLSCSWSGLGKPLASADKNGVV 506 (510)
Q Consensus 452 ~~~l~~~~~dg~i~iwd~~~~~~~~~~---~--~~~~~v~~~~~~~~~~~l~s~~~dg~i 506 (510)
|.+ ..|+..| +.++.....-..... . .....|.++.-..+|.+.+ |+.+|.+
T Consensus 290 g~l-WiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~Gl~ 346 (758)
T 3ott_A 290 HNI-WLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANGLI 346 (758)
T ss_dssp CCE-EEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTEEE
T ss_pred CCE-EEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCcce
Confidence 764 4455567 555543221111111 0 1234588888777776443 3445543
No 311
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=98.29 E-value=0.00014 Score=66.02 Aligned_cols=225 Identities=10% Similarity=0.119 Sum_probs=117.0
Q ss_pred CCEEEEeeCC----CeEEEEeCCCCcceec--ccccccceeEEEEecCCCEEEEEeCC-----CeEEEEEcCCCCeeEe-
Q 010470 237 SARLISGGQD----KSIKLWDTNTGSLSST--LYGCLGSVLDLAITHDNRSVIAASSS-----NNLYVWDVNSGRVRHT- 304 (510)
Q Consensus 237 ~~~l~s~~~d----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~- 304 (510)
+.+++.|+.+ ..+.+||+.+..-... +...... .+++ .-++..++.|+.+ ..+.+||+.+.+-...
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCR-AGMV-YMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEE-EETTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccccc-ceEE-EECCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 3455556543 3578888876653221 1111111 1222 2266677777644 3688999887653322
Q ss_pred -ecCCCCceEEEEEecCCCCEEEEEeCCC-----cEEEEECCCCeEeeeeeecCc--eeEEEEcCCCCEEEEecCC----
Q 010470 305 -LTGHTDKVCAVDVSKISSRHVVSAAYDR-----TLKVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFSGHID---- 372 (510)
Q Consensus 305 -~~~~~~~v~~i~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~d---- 372 (510)
+...... .++... ++.+++.|+.++ .+.+||+.++.....-..+.. ..+++. .++..++.|+.+
T Consensus 94 ~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~ 169 (302)
T 2xn4_A 94 NMRDRRST-LGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASR 169 (302)
T ss_dssp CCSSCCBS-CEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTT
T ss_pred CCCccccc-eEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCC
Confidence 1111111 122222 567777777553 578899987765443222221 122222 266777776542
Q ss_pred ---CcEEEEECCCCceeeeecccc-cccEEEEEEcCCCCEEEEEecC-----CcEEEEEcCCceeeeEeecCCCeeecCc
Q 010470 373 ---GNLRLWDIQTGKLLSEVAAHS-LAAVTSISLSRSGNIILTSGRD-----NLHNLFDIRSLEVCGSLRATGNRVASNW 443 (510)
Q Consensus 373 ---g~i~i~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 443 (510)
..+.+||+.+.+-...-.... ......+.+ ++.+++.|+.+ +.+.+||+.+..-...-........ .
T Consensus 170 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~--~ 245 (302)
T 2xn4_A 170 QCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRN--A 245 (302)
T ss_dssp EECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBS--C
T ss_pred ccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcccc--C
Confidence 358899987764332211111 012222222 56777777754 3688999987654332211111111 1
Q ss_pred eeEEEcCCCCEEEEEcCCC-----eEEEEeCCCcc
Q 010470 444 SRSCISPDESYVAAGSADG-----SVYIWSISKAD 473 (510)
Q Consensus 444 ~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~ 473 (510)
.+...++.+++.|+.++ .+.+||+.+.+
T Consensus 246 --~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 246 --GVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp --EEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred --eEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 22334677888887653 48999987654
No 312
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=98.27 E-value=0.00037 Score=63.43 Aligned_cols=222 Identities=11% Similarity=0.095 Sum_probs=117.2
Q ss_pred EEEEeeC--CCeEEEEeCCCCccee--cccccccceeEEEEecCCCEEEEEeCC----CeEEEEEcCCCCeeEe--ecCC
Q 010470 239 RLISGGQ--DKSIKLWDTNTGSLSS--TLYGCLGSVLDLAITHDNRSVIAASSS----NNLYVWDVNSGRVRHT--LTGH 308 (510)
Q Consensus 239 ~l~s~~~--dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~--~~~~ 308 (510)
+++.||. ...+.+||..+++-.. .+.........+ ..++..++.|+.+ ..+.+||+.+++-... +...
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACV--FWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEE--EETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEE--EECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 4555554 3568899988765322 121111111222 2366677777754 5788999887753322 2211
Q ss_pred CCceEEEEEecCCCCEEEEEeCC------CcEEEEECCCCeEeeeeeecCc--eeEEEEcCCCCEEEEecC---------
Q 010470 309 TDKVCAVDVSKISSRHVVSAAYD------RTLKVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFSGHI--------- 371 (510)
Q Consensus 309 ~~~v~~i~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~--------- 371 (510)
......+.+ ++.+++.|+.+ ..+.+||+.++.....-..+.. -.+++. .++.+++.|+.
T Consensus 92 r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~ 167 (306)
T 3ii7_A 92 RDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRV 167 (306)
T ss_dssp CBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEE
T ss_pred ccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccc
Confidence 111122222 56777777765 4689999988765443222211 122222 26677776653
Q ss_pred CCcEEEEECCCCceeeeeccccc-ccEEEEEEcCCCCEEEEEecC-----CcEEEEEcCCceeeeEeecCCCeeecCcee
Q 010470 372 DGNLRLWDIQTGKLLSEVAAHSL-AAVTSISLSRSGNIILTSGRD-----NLHNLFDIRSLEVCGSLRATGNRVASNWSR 445 (510)
Q Consensus 372 dg~i~i~d~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 445 (510)
-..+.+||+.+..-...-..... .....+.+ ++.+++.|+.+ ..+.+||+.+..-...-..+.... ..
T Consensus 168 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~--~~-- 241 (306)
T 3ii7_A 168 LNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGV--TV-- 241 (306)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBS--CC--
T ss_pred cceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcc--ce--
Confidence 34588999987643222111110 11222222 56677777654 468899998754332211111111 11
Q ss_pred EEEcCCCCEEEEEcCC-----CeEEEEeCCCc
Q 010470 446 SCISPDESYVAAGSAD-----GSVYIWSISKA 472 (510)
Q Consensus 446 ~~~s~~~~~l~~~~~d-----g~i~iwd~~~~ 472 (510)
.+..-++.+++.|+.+ ..+.+||+.+.
T Consensus 242 ~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 242 KCAAVGSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EEEEETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred eEEEECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 1222367788888754 46889998765
No 313
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=98.18 E-value=0.0013 Score=60.93 Aligned_cols=238 Identities=13% Similarity=0.070 Sum_probs=126.7
Q ss_pred cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee-------cCCCCceEEEEEecC---CCCEEEEEeC-------
Q 010470 268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL-------TGHTDKVCAVDVSKI---SSRHVVSAAY------- 330 (510)
Q Consensus 268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-------~~~~~~v~~i~~~~~---~~~~l~s~~~------- 330 (510)
.....|+|.|+|+.++++...|.|++++.. +.....+ .........++++|. ++.+.++-+.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 356889999999845566678999999843 3321111 112345688999984 3444444332
Q ss_pred CCcEEEEECCCC--e--Eeeee----e----ecCceeEEEEcCCCCEEEEecC-------------CCcEEEEECCCCc-
Q 010470 331 DRTLKVWDLHKG--Y--CVNTI----I----FHSNCNALAFSMDGQTIFSGHI-------------DGNLRLWDIQTGK- 384 (510)
Q Consensus 331 dg~i~iwd~~~~--~--~~~~~----~----~~~~i~~i~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~- 384 (510)
...|..|++..+ . ....+ . ..+....+.|.|||.++++.+. .|.|..+|....-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 235777766533 1 11111 1 1122568999999966555432 2568778764320
Q ss_pred -----------eeeeecccccccEEEEEEcC-CCCEEEEEec-CCcEEEEEcCCceeee--------E-----e------
Q 010470 385 -----------LLSEVAAHSLAAVTSISLSR-SGNIILTSGR-DNLHNLFDIRSLEVCG--------S-----L------ 432 (510)
Q Consensus 385 -----------~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~-d~~i~i~d~~~~~~~~--------~-----~------ 432 (510)
....+.... .....++|+| +|.++++-.. ++.=.|.-+..+.... . +
T Consensus 177 ~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 111222222 5688999999 5554444322 1111222221111100 0 0
Q ss_pred --ecCCCee-----ecCceeEEEc-------CCCCEEEEEcCCCeEEEEeCCCcceeec---ccccCcCEEEEEEeCCCC
Q 010470 433 --RATGNRV-----ASNWSRSCIS-------PDESYVAAGSADGSVYIWSISKADIVRT---LKEHTAPVLSCSWSGLGK 495 (510)
Q Consensus 433 --~~~~~~~-----~~~~~~~~~s-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~~~~~~~ 495 (510)
.....+. ......+.|. .+|.++++....+.|...++..++.... +......+.++++.|||.
T Consensus 256 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ 335 (353)
T 2g8s_A 256 IVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY 335 (353)
T ss_dssp SCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred CCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence 0000000 0122335554 2577888777788888888876543322 222335789999999998
Q ss_pred cEEEee-CCCeEE
Q 010470 496 PLASAD-KNGVVC 507 (510)
Q Consensus 496 ~l~s~~-~dg~i~ 507 (510)
++++.. .+|.|.
T Consensus 336 lyv~td~~~g~I~ 348 (353)
T 2g8s_A 336 LYVLTDESSGELL 348 (353)
T ss_dssp EEEEECSTTEEEE
T ss_pred EEEEEeCCCCEEE
Confidence 666533 566654
No 314
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=98.17 E-value=0.00046 Score=62.86 Aligned_cols=226 Identities=9% Similarity=0.040 Sum_probs=117.4
Q ss_pred cCCCEEEEeeCC----CeEEEEeCCCCcceec--ccccccceeEEEEecCCCEEEEEeC----C-----CeEEEEEcCCC
Q 010470 235 YNSARLISGGQD----KSIKLWDTNTGSLSST--LYGCLGSVLDLAITHDNRSVIAASS----S-----NNLYVWDVNSG 299 (510)
Q Consensus 235 ~~~~~l~s~~~d----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~----d-----~~i~iwd~~~~ 299 (510)
-++.+++.||.+ ..+.+||..+++-... +...... .+++ ..++..++.|+. + +.+.+||+.+.
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSG-LAGC-VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEE-EETTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccccc-ceEE-EECCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 355677777642 3688999877653221 1111111 1222 226666666665 2 46888998776
Q ss_pred CeeEe--ecCCCCceEEEEEecCCCCEEEEEeCC-----CcEEEEECCCCeEeeeeeecCc--eeEEEEcCCCCEEEEec
Q 010470 300 RVRHT--LTGHTDKVCAVDVSKISSRHVVSAAYD-----RTLKVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFSGH 370 (510)
Q Consensus 300 ~~~~~--~~~~~~~v~~i~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~ 370 (510)
+-... +.........+.+ ++.+++.|+.+ ..+.+||+.+++....-..+.. -.+++.. ++.+++.|+
T Consensus 101 ~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 176 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGG 176 (308)
T ss_dssp EEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred eEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeC
Confidence 53222 1111111122222 56677777643 4688999987765433222211 1222222 667777776
Q ss_pred CC-----CcEEEEECCCCceeeeecccc-cccEEEEEEcCCCCEEEEEecC-----CcEEEEEcCCceeeeEeecCCCee
Q 010470 371 ID-----GNLRLWDIQTGKLLSEVAAHS-LAAVTSISLSRSGNIILTSGRD-----NLHNLFDIRSLEVCGSLRATGNRV 439 (510)
Q Consensus 371 ~d-----g~i~i~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~ 439 (510)
.+ ..+.+||+.+.+-...-.... ......+.+ ++.+++.|+.+ ..+.+||+.+..-...-..+....
T Consensus 177 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 254 (308)
T 1zgk_A 177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRS 254 (308)
T ss_dssp BCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCB
T ss_pred CCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCcc
Confidence 54 458999987764322111111 012222333 56777777664 568999998765432211111111
Q ss_pred ecCceeEEEcCCCCEEEEEcCC-----CeEEEEeCCCc
Q 010470 440 ASNWSRSCISPDESYVAAGSAD-----GSVYIWSISKA 472 (510)
Q Consensus 440 ~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~ 472 (510)
.. .+...++.+++.|+.+ ..+.+||+.+.
T Consensus 255 --~~--~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 255 --AL--GITVHQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp --SC--EEEEETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred --ce--EEEEECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 11 1222367777777754 35788887764
No 315
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.14 E-value=0.0002 Score=64.95 Aligned_cols=203 Identities=15% Similarity=0.112 Sum_probs=104.6
Q ss_pred CeEEEEEcCCCCeeEe--ecCCCCceEEEEEecCCCCEEEEEeCC-----CcEEEEECCCCe---EeeeeeecC--ceeE
Q 010470 289 NNLYVWDVNSGRVRHT--LTGHTDKVCAVDVSKISSRHVVSAAYD-----RTLKVWDLHKGY---CVNTIIFHS--NCNA 356 (510)
Q Consensus 289 ~~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~---~~~~~~~~~--~i~~ 356 (510)
..+.+||+.+++-... +...... .++.. . ++.+++.|+.+ ..+.+||+.++. ....-..+. .-.+
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~ 107 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRY-VASVS-L-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAG 107 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBS-CEEEE-E-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhcc-ccEEE-E-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCcccee
Confidence 3688888877653221 1111111 12222 2 56777777755 468999998765 332222121 1122
Q ss_pred EEEcCCCCEEEEecCC-----CcEEEEECCCCceeeeecccc-cccEEEEEEcCCCCEEEEEecC-----CcEEEEEcCC
Q 010470 357 LAFSMDGQTIFSGHID-----GNLRLWDIQTGKLLSEVAAHS-LAAVTSISLSRSGNIILTSGRD-----NLHNLFDIRS 425 (510)
Q Consensus 357 i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d-----~~i~i~d~~~ 425 (510)
++. .++..++.|+.+ ..+.+||+.+.+-...-.... ......+.+ ++.+++.|+.+ ..+.+||+.+
T Consensus 108 ~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~ 184 (301)
T 2vpj_A 108 ATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHT 184 (301)
T ss_dssp EEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred EEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCC
Confidence 222 267777777643 358899987765332211111 012222222 66777777654 4688999887
Q ss_pred ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC-----CeEEEEeCCCcce--eecccccCcCEEEEEEeCCCCcEE
Q 010470 426 LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD-----GSVYIWSISKADI--VRTLKEHTAPVLSCSWSGLGKPLA 498 (510)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~ 498 (510)
..-...-..+.... .. .+...++.+++.|+.+ ..+.+||+.+.+- +..+.........+.+ ++..++
T Consensus 185 ~~W~~~~~~p~~r~--~~--~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v 258 (301)
T 2vpj_A 185 GHWTNVTPMATKRS--GA--GVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYA 258 (301)
T ss_dssp TEEEEECCCSSCCB--SC--EEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEE
T ss_pred CcEEeCCCCCcccc--cc--eEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEE
Confidence 65433211111111 11 2233367777887764 4689999877542 2222222222223333 666777
Q ss_pred EeeCC
Q 010470 499 SADKN 503 (510)
Q Consensus 499 s~~~d 503 (510)
.||.+
T Consensus 259 ~GG~~ 263 (301)
T 2vpj_A 259 IAGYD 263 (301)
T ss_dssp ECCBC
T ss_pred EcCcC
Confidence 77765
No 316
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.13 E-value=0.00087 Score=61.61 Aligned_cols=191 Identities=11% Similarity=0.144 Sum_probs=108.6
Q ss_pred eeEEEEecCCCEEEEE------------eCCCeEEEEEcCC--CCee-EeecC-----CCCceEEEEEecC-CC-CEEEE
Q 010470 270 VLDLAITHDNRSVIAA------------SSSNNLYVWDVNS--GRVR-HTLTG-----HTDKVCAVDVSKI-SS-RHVVS 327 (510)
Q Consensus 270 v~~~~~~~~~~~l~~~------------~~d~~i~iwd~~~--~~~~-~~~~~-----~~~~v~~i~~~~~-~~-~~l~s 327 (510)
.-++.+.|+|..++++ ..+|.|.++|+.+ ++.. ..+.+ ..-....+.+.++ ++ .+|+.
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 3455566665444333 2688999999874 2321 12222 2246777887663 23 23444
Q ss_pred E-eC--CCcEEEEECCC--CeE--eeeeeec--CceeEEEEcCCCCEEEEec-----------------CCCcEEEEECC
Q 010470 328 A-AY--DRTLKVWDLHK--GYC--VNTIIFH--SNCNALAFSMDGQTIFSGH-----------------IDGNLRLWDIQ 381 (510)
Q Consensus 328 ~-~~--dg~i~iwd~~~--~~~--~~~~~~~--~~i~~i~~~~~~~~l~~~~-----------------~dg~i~i~d~~ 381 (510)
+ .. +.+|.+|++.. +.. +..+... ..++.+.+.++|.+.++.. ..|.|+.||..
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~ 211 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN 211 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC
Confidence 4 32 45677776543 322 2222221 3489999999998777654 13567777753
Q ss_pred CCceeeeecccccccEEEEEEcCCCCEEEEEe-cCCcEEEEEcCC-cee--eeEeecCCCeeecCceeEEEcC-CCCEEE
Q 010470 382 TGKLLSEVAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDIRS-LEV--CGSLRATGNRVASNWSRSCISP-DESYVA 456 (510)
Q Consensus 382 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~-~~~--~~~~~~~~~~~~~~~~~~~~s~-~~~~l~ 456 (510)
+ +..+... ....+.++|+||++.|+++. ..+.|..|++.. +.. ...+.. . .....+++++ +|++.+
T Consensus 212 --~-~~~~~~~-l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~-~----g~PDGi~vD~e~G~lwv 282 (355)
T 3sre_A 212 --D-VRVVAEG-FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF-D----TLVDNISVDPVTGDLWV 282 (355)
T ss_dssp --C-CEEEEEE-ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC-S----SEEEEEEECTTTCCEEE
T ss_pred --e-EEEeecC-CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC-C----CCCceEEEeCCCCcEEE
Confidence 2 2222222 25789999999998777665 568999999863 322 222321 1 2223478999 599877
Q ss_pred EEcCC-CeEEEEeC
Q 010470 457 AGSAD-GSVYIWSI 469 (510)
Q Consensus 457 ~~~~d-g~i~iwd~ 469 (510)
++..+ +.|..|+.
T Consensus 283 a~~~~g~~v~~~~P 296 (355)
T 3sre_A 283 GCHPNGMRIFFYDA 296 (355)
T ss_dssp EEESCHHHHHSCCT
T ss_pred EecCCceEEEEECC
Confidence 66544 34444443
No 317
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=98.13 E-value=0.0032 Score=58.36 Aligned_cols=235 Identities=11% Similarity=0.068 Sum_probs=126.6
Q ss_pred ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcce---ecc----cccccceeEEEEecC---CCEEEEEe-C------
Q 010470 225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLS---STL----YGCLGSVLDLAITHD---NRSVIAAS-S------ 287 (510)
Q Consensus 225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~----~~~~~~v~~~~~~~~---~~~l~~~~-~------ 287 (510)
-.....|+|.|+|+.|+++...|.|++++.. +... ..+ .........++|+|+ +..|+++. .
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 3457899999999834455567999999854 3321 111 122346789999996 55555543 2
Q ss_pred -CCeEEEEEcCCC--C--eeE-eecC------CCCceEEEEEecCCCCEEEEEeC-------------CCcEEEEECCCC
Q 010470 288 -SNNLYVWDVNSG--R--VRH-TLTG------HTDKVCAVDVSKISSRHVVSAAY-------------DRTLKVWDLHKG 342 (510)
Q Consensus 288 -d~~i~iwd~~~~--~--~~~-~~~~------~~~~v~~i~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~ 342 (510)
...|..|++..+ . ... .+.. .......+.|.| ++.++++.+. .|.|.-+|....
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 235777776533 1 111 1111 112235799999 6665555433 246777776532
Q ss_pred e------------Eeeee-eecCceeEEEEcC-CCCEEEEecC-CCcEEEEECCCCc-----------------------
Q 010470 343 Y------------CVNTI-IFHSNCNALAFSM-DGQTIFSGHI-DGNLRLWDIQTGK----------------------- 384 (510)
Q Consensus 343 ~------------~~~~~-~~~~~i~~i~~~~-~~~~l~~~~~-dg~i~i~d~~~~~----------------------- 384 (510)
- ....+ .....+..++|+| +|.++++-.. ++.=.|.-+..+.
T Consensus 175 ~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~ 254 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG 254 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred CCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence 0 11122 2335588999999 5655544221 1111222111111
Q ss_pred --------eeeeecccccccEEEEEEcC-------CCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEc
Q 010470 385 --------LLSEVAAHSLAAVTSISLSR-------SGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCIS 449 (510)
Q Consensus 385 --------~~~~~~~~~~~~i~~i~~~~-------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s 449 (510)
++..+.. + ..+..+.|.. +|.++++....+.|..+++..+.......... .....+..+++.
T Consensus 255 ~~~~~~~~P~~~~~~-~-~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~rp~~v~~~ 331 (353)
T 2g8s_A 255 EIVAGTEQPVFYWKD-S-PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILT-DRGQRIRDVRTG 331 (353)
T ss_dssp SSCTTSCCCSEEESS-C-CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESG-GGCCCEEEEEEC
T ss_pred CCCCCccCCeEEeCC-C-cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEccc-CCCCceeEEEEC
Confidence 1111111 1 4577788864 46777777777888888887654432221110 111234558899
Q ss_pred CCCCEEEEEc-CCCeE
Q 010470 450 PDESYVAAGS-ADGSV 464 (510)
Q Consensus 450 ~~~~~l~~~~-~dg~i 464 (510)
|||.++++.. .+|.|
T Consensus 332 pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 332 PDGYLYVLTDESSGEL 347 (353)
T ss_dssp TTSCEEEEECSTTEEE
T ss_pred CCCcEEEEEeCCCCEE
Confidence 9998666533 45544
No 318
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=98.09 E-value=0.0017 Score=61.96 Aligned_cols=259 Identities=13% Similarity=0.128 Sum_probs=150.9
Q ss_pred EEEEeeCCCeEEEEeCCCCcceeccccc-------------------------ccce--eEEEEe---cCCCEEEEEe-C
Q 010470 239 RLISGGQDKSIKLWDTNTGSLSSTLYGC-------------------------LGSV--LDLAIT---HDNRSVIAAS-S 287 (510)
Q Consensus 239 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------------------~~~v--~~~~~~---~~~~~l~~~~-~ 287 (510)
.|.|||..|.|+|+-+.+++.+..+.-. .+.. ..+++. -||++|+.-. .
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 3678888999999999888776543211 0111 123332 2677888877 5
Q ss_pred CCeEEEEEcCCCCeeEeecC-CCCceEEEEEec-CCCCEEEEEeC-------CCcE------------EEEECCCCeEee
Q 010470 288 SNNLYVWDVNSGRVRHTLTG-HTDKVCAVDVSK-ISSRHVVSAAY-------DRTL------------KVWDLHKGYCVN 346 (510)
Q Consensus 288 d~~i~iwd~~~~~~~~~~~~-~~~~v~~i~~~~-~~~~~l~s~~~-------dg~i------------~iwd~~~~~~~~ 346 (510)
+..|...++...++-..+.- ....+.++.+.. .+..+++.++. ||.. ...|..+.+...
T Consensus 152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~ 231 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF 231 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence 66888888888776555542 345677777762 26667777654 2221 122344444444
Q ss_pred eeeecCceeEEEEcCCCCEEEEecCCC---------------cEEEEE-------------------------CCC----
Q 010470 347 TIIFHSNCNALAFSMDGQTIFSGHIDG---------------NLRLWD-------------------------IQT---- 382 (510)
Q Consensus 347 ~~~~~~~i~~i~~~~~~~~l~~~~~dg---------------~i~i~d-------------------------~~~---- 382 (510)
.+....+...+...++|.+.++.+.+. .+.+++ .+.
T Consensus 232 Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~ 311 (638)
T 3sbq_A 232 QVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGK 311 (638)
T ss_dssp EEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTB
T ss_pred EEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccccc
Confidence 444444555566677777776654321 244444 332
Q ss_pred Ccee-eeecccccccEEEEEEcCCCCEEEEEe-cCCcEEEEEcCCceee---------eEeecCCCeeecCceeEEEcCC
Q 010470 383 GKLL-SEVAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDIRSLEVC---------GSLRATGNRVASNWSRSCISPD 451 (510)
Q Consensus 383 ~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~---------~~~~~~~~~~~~~~~~~~~s~~ 451 (510)
+..+ ..+... ..+..+.++|||+++++++ -+.++.++|..+.... ..+... ..........+|+++
T Consensus 312 ~~~~~~~iP~p--ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae-~e~GlGPlHt~Fd~~ 388 (638)
T 3sbq_A 312 DSKFTRYVPVP--KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGE-PELGLGPLHTTFDGR 388 (638)
T ss_dssp CCSSEEEEEES--SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEEC-CBCCSCEEEEEECSS
T ss_pred CCceEEEEeCC--CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEee-ccCCCcccEEEECCC
Confidence 1111 111111 4566789999999988766 5679999999852210 001111 112223344789999
Q ss_pred CCEEEEEcCCCeEEEEeCCCc----------ceeecccccCcCEEEEEE------eCCCCcEEEee
Q 010470 452 ESYVAAGSADGSVYIWSISKA----------DIVRTLKEHTAPVLSCSW------SGLGKPLASAD 501 (510)
Q Consensus 452 ~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~------~~~~~~l~s~~ 501 (510)
|....+-.-|..|.-|++... ..+..+.-|-.+ -.+.- .|+|++|++..
T Consensus 389 G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 389 GNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp SEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEE
T ss_pred CceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEec
Confidence 966667778999999998753 334444444432 23322 57888888864
No 319
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=98.07 E-value=0.00096 Score=60.91 Aligned_cols=223 Identities=9% Similarity=0.045 Sum_probs=115.7
Q ss_pred EEEEeeCCCeEEEEeCCCCccee-cccccccceeEEEEecCCCEEEEEeC-----C------CeEEEEEcCCCCeeEeec
Q 010470 239 RLISGGQDKSIKLWDTNTGSLSS-TLYGCLGSVLDLAITHDNRSVIAASS-----S------NNLYVWDVNSGRVRHTLT 306 (510)
Q Consensus 239 ~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~-----d------~~i~iwd~~~~~~~~~~~ 306 (510)
+++.|+ ..+.+||..+++-.. .+..........+...++..++.|+. . ..+.+||+.+++-.. +.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-CC
Confidence 344555 578999998776432 11111122233334457788888873 1 137788887765322 11
Q ss_pred CCCCce--EEEEEecCCCCEEEEEeCC--------CcEEEEECCCCeEeeeeeecCc--eeEEEEcCCCCEEEEecC-C-
Q 010470 307 GHTDKV--CAVDVSKISSRHVVSAAYD--------RTLKVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFSGHI-D- 372 (510)
Q Consensus 307 ~~~~~v--~~i~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~-d- 372 (510)
....+- .++... ++.+++.|+.+ ..+.+||+.+++....-..+.+ -.+++. .++..++.|+. +
T Consensus 84 ~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 84 PLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSD 160 (315)
T ss_dssp CBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTT
T ss_pred CCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCC
Confidence 111111 122222 56677777742 4689999988764433222211 122222 36677777765 2
Q ss_pred ----CcEEEEECCCCceeeeecccc-cccEEEEEEcCCCCEEEEEecCC-----cEEEEEcCCceeeeEeecCCCeeecC
Q 010470 373 ----GNLRLWDIQTGKLLSEVAAHS-LAAVTSISLSRSGNIILTSGRDN-----LHNLFDIRSLEVCGSLRATGNRVASN 442 (510)
Q Consensus 373 ----g~i~i~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~ 442 (510)
..+.+||+.+.+-...-..+. .....++.+ ++.+++.|+.++ .+.+||+.+..-...-..+.....
T Consensus 161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-- 236 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSS-- 236 (315)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBS--
T ss_pred CcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccc--
Confidence 468999987764322111111 011222222 567777777654 588899887644332211111111
Q ss_pred ceeEEEcCCCCEEEEEcCCC--------------eEEEEeCCCcc
Q 010470 443 WSRSCISPDESYVAAGSADG--------------SVYIWSISKAD 473 (510)
Q Consensus 443 ~~~~~~s~~~~~l~~~~~dg--------------~i~iwd~~~~~ 473 (510)
. .+...++.+++.|+.++ .|.+||+.+.+
T Consensus 237 ~--~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 237 L--SLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp C--EEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred e--eEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 1 22233677777777532 47788877653
No 320
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=98.07 E-value=8.1e-05 Score=67.74 Aligned_cols=194 Identities=12% Similarity=0.120 Sum_probs=110.8
Q ss_pred CEEEEEeCCCeEEEEEcCCCCeeEeecCC-CCceEEEEEe--cCCCCEEEEE-eCCCcEEEEECCCCeEeeeeeecCce-
Q 010470 280 RSVIAASSSNNLYVWDVNSGRVRHTLTGH-TDKVCAVDVS--KISSRHVVSA-AYDRTLKVWDLHKGYCVNTIIFHSNC- 354 (510)
Q Consensus 280 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~--~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~i- 354 (510)
..+++++.||.|+-+|..+|+....+... ..++....-. +.++..++.. +.||.|..+|..+|.....+..+.-+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 46899999999999999999999988754 1222221100 1122333343 57999999999988665544433211
Q ss_pred -eEEEEc-----------CCCCEEEEecCCCcEEEEECCCCceeeeeccccccc------EEEEEEc-----CCCCEEEE
Q 010470 355 -NALAFS-----------MDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA------VTSISLS-----RSGNIILT 411 (510)
Q Consensus 355 -~~i~~~-----------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~------i~~i~~~-----~~~~~l~~ 411 (510)
..+... ..+..+++|+.+|.+...|+++|+.+..+....... ..|.... ..+..++.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 111110 145678899999999999999999999887543111 0111111 12456777
Q ss_pred EecCCcEEEEEcCCceeeeEeecC---CCeeecCc-eeEEEcCCCCEEEEEcCCCeEEEEeCCCcceee
Q 010470 412 SGRDNLHNLFDIRSLEVCGSLRAT---GNRVASNW-SRSCISPDESYVAAGSADGSVYIWSISKADIVR 476 (510)
Q Consensus 412 ~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~-~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 476 (510)
+..+..+.+.+ ++++ ...+... .......+ ....++.|+.++ +++.||.|.-+|..+|..+.
T Consensus 171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~-~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCI-APFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCE-EEETTTEEEEECSTTCCEEE
T ss_pred ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEE-EECCCCEEEEEECCCCcEEE
Confidence 77666666666 3443 2111100 00000000 000112346664 46778888888888887765
No 321
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=98.06 E-value=0.00039 Score=63.14 Aligned_cols=204 Identities=14% Similarity=0.177 Sum_probs=103.3
Q ss_pred CeEEEEEcCCCCeeEe--ecCCCCceEEEEEecCCCCEEEEEeCC-----CcEEEEECCCCeEeeeeeecCc--eeEEEE
Q 010470 289 NNLYVWDVNSGRVRHT--LTGHTDKVCAVDVSKISSRHVVSAAYD-----RTLKVWDLHKGYCVNTIIFHSN--CNALAF 359 (510)
Q Consensus 289 ~~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~--i~~i~~ 359 (510)
..+.+||+.+.+-... +...... .++... ++.+++.|+.+ ..+.+||+.+.+....-..+.. -.+++.
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 106 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCR-AGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV 106 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBS-CEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred CcEEEEcCcCCcEeEcccCCccccc-ceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE
Confidence 3577888876653221 1111111 122222 56777777754 3588999988764433222211 122222
Q ss_pred cCCCCEEEEecCCC-----cEEEEECCCCceeeeeccccc-ccEEEEEEcCCCCEEEEEecC-------CcEEEEEcCCc
Q 010470 360 SMDGQTIFSGHIDG-----NLRLWDIQTGKLLSEVAAHSL-AAVTSISLSRSGNIILTSGRD-------NLHNLFDIRSL 426 (510)
Q Consensus 360 ~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~d-------~~i~i~d~~~~ 426 (510)
.++..++.|+.++ .+.+||+.+.+-...-..... .....+.+ ++.+++.|+.+ ..+.+||+.+.
T Consensus 107 -~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~ 183 (302)
T 2xn4_A 107 -LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTN 183 (302)
T ss_dssp -ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTT
T ss_pred -ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCC
Confidence 2667777776543 478899877653322111110 11222222 56667776643 35889998876
Q ss_pred eeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC-----CeEEEEeCCCcc--eeecccccCcCEEEEEEeCCCCcEEE
Q 010470 427 EVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD-----GSVYIWSISKAD--IVRTLKEHTAPVLSCSWSGLGKPLAS 499 (510)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s 499 (510)
.-...-..+.... .. .+...++.+++.|+.+ ..+.+||+.+.+ .+..+.........+.+ ++..++.
T Consensus 184 ~W~~~~~~p~~r~--~~--~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i~v~ 257 (302)
T 2xn4_A 184 EWTYIAEMSTRRS--GA--GVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGLLYVV 257 (302)
T ss_dssp EEEEECCCSSCCB--SC--EEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEE
T ss_pred cEEECCCCccccc--cc--cEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCEEEEE
Confidence 5433211111111 11 2223367788888764 368999987653 22222211111122222 6677777
Q ss_pred eeCCC
Q 010470 500 ADKNG 504 (510)
Q Consensus 500 ~~~dg 504 (510)
||.++
T Consensus 258 GG~~~ 262 (302)
T 2xn4_A 258 GGDDG 262 (302)
T ss_dssp CCBCS
T ss_pred CCcCC
Confidence 77654
No 322
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.03 E-value=0.0082 Score=55.13 Aligned_cols=199 Identities=14% Similarity=0.164 Sum_probs=119.9
Q ss_pred ccccccceEEEEEecCCCEEEEee------------CCCeEEEEeCCCC--cce-ecccc-----cccceeEEEEec--C
Q 010470 221 INAHEGGCASILFEYNSARLISGG------------QDKSIKLWDTNTG--SLS-STLYG-----CLGSVLDLAITH--D 278 (510)
Q Consensus 221 ~~~h~~~v~~~~~s~~~~~l~s~~------------~dg~i~iwd~~~~--~~~-~~~~~-----~~~~v~~~~~~~--~ 278 (510)
+.+-....-.+.+.|+|..+++++ .+|.|.++|+.+. +.. -.+.+ .......+.+.+ +
T Consensus 45 i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~d 124 (355)
T 3sre_A 45 VKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDD 124 (355)
T ss_dssp CTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTT
T ss_pred eCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCC
Confidence 444334566777888875555542 6899999998742 221 11112 234667788766 4
Q ss_pred CC-EEEEEe-C--CCeEEEEEcCCCC----eeEeecCC-CCceEEEEEecCCCCEEEEEe-----------------CCC
Q 010470 279 NR-SVIAAS-S--SNNLYVWDVNSGR----VRHTLTGH-TDKVCAVDVSKISSRHVVSAA-----------------YDR 332 (510)
Q Consensus 279 ~~-~l~~~~-~--d~~i~iwd~~~~~----~~~~~~~~-~~~v~~i~~~~~~~~~l~s~~-----------------~dg 332 (510)
+. +|+++. . +..|.+|++..+. .+..+.+. -...+.+.+.+ ++.+.++.. ..|
T Consensus 125 g~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g 203 (355)
T 3sre_A 125 NTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWS 203 (355)
T ss_dssp CCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCE
T ss_pred CcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCcc
Confidence 54 455553 2 4678888876542 23333332 24578888888 666666543 125
Q ss_pred cEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEe-cCCCcEEEEECCC-Cce--eeeecccccccEEEEEEcC-CCC
Q 010470 333 TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSG-HIDGNLRLWDIQT-GKL--LSEVAAHSLAAVTSISLSR-SGN 407 (510)
Q Consensus 333 ~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~i~d~~~-~~~--~~~~~~~~~~~i~~i~~~~-~~~ 407 (510)
.|..+|. +........-...+.++|+||++.++++ +..+.|..|++.. +.. ...+.. .+.+..+++++ +|+
T Consensus 204 ~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~--~g~PDGi~vD~e~G~ 279 (355)
T 3sre_A 204 FVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF--DTLVDNISVDPVTGD 279 (355)
T ss_dssp EEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC--SSEEEEEEECTTTCC
T ss_pred EEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC--CCCCceEEEeCCCCc
Confidence 5666665 3332223333568999999999877755 4578899999863 322 223322 26788999999 599
Q ss_pred EEEEEecC-CcEEEEEcC
Q 010470 408 IILTSGRD-NLHNLFDIR 424 (510)
Q Consensus 408 ~l~~~~~d-~~i~i~d~~ 424 (510)
+.+++..+ +.|..|+..
T Consensus 280 lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 280 LWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEEEEESCHHHHHSCCTT
T ss_pred EEEEecCCceEEEEECCC
Confidence 88876544 345555544
No 323
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=98.02 E-value=0.0081 Score=54.91 Aligned_cols=234 Identities=12% Similarity=0.079 Sum_probs=127.3
Q ss_pred eeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc--eecc----cccccceeEEEEecC---CCEEEEE-e-
Q 010470 218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL--SSTL----YGCLGSVLDLAITHD---NRSVIAA-S- 286 (510)
Q Consensus 218 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~----~~~~~~v~~~~~~~~---~~~l~~~-~- 286 (510)
...+...-.....|+|.|+|.++++--..|.|++++..++.. +..+ .........|+++|+ +..|++. +
T Consensus 24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~ 103 (347)
T 3das_A 24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS 103 (347)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence 334444455688999999998777776689999998765543 2111 233567889999995 4455543 2
Q ss_pred -CCCeEEEEEcCCC-----C-----ee-Eeec-CCCCceEEEEEecCCCCEEEEEeC-------------CCcEEEEECC
Q 010470 287 -SSNNLYVWDVNSG-----R-----VR-HTLT-GHTDKVCAVDVSKISSRHVVSAAY-------------DRTLKVWDLH 340 (510)
Q Consensus 287 -~d~~i~iwd~~~~-----~-----~~-~~~~-~~~~~v~~i~~~~~~~~~l~s~~~-------------dg~i~iwd~~ 340 (510)
.++.|.-|.+..+ . .+ ..+. ........+.|.| ++.++++.+. .|.|.-++..
T Consensus 104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d 182 (347)
T 3das_A 104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD 182 (347)
T ss_dssp SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence 4556777766542 1 11 1122 1122345688998 6777666542 3566666654
Q ss_pred CCe-------Eeeee-eecCceeEEEEcCCCCEEEEec-CCCcEEEEECCCCc------------------eeeeecccc
Q 010470 341 KGY-------CVNTI-IFHSNCNALAFSMDGQTIFSGH-IDGNLRLWDIQTGK------------------LLSEVAAHS 393 (510)
Q Consensus 341 ~~~-------~~~~~-~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~------------------~~~~~~~~~ 393 (510)
..- ....+ ..+.++..++|+|+|.++++-. .++.=.|.-+..+. ++..+..++
T Consensus 183 G~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~ 262 (347)
T 3das_A 183 GEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDE 262 (347)
T ss_dssp SSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTT
T ss_pred CCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCC
Confidence 220 00112 2345678999999888766532 22222222222221 112222221
Q ss_pred cccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceee----eEeecCCCeeecCceeEEEcCCCCEEEEE
Q 010470 394 LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVC----GSLRATGNRVASNWSRSCISPDESYVAAG 458 (510)
Q Consensus 394 ~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 458 (510)
.....+.|. +|..++..-..+.|..+.+.....+ ..+... ...+..+.+.|||.++++.
T Consensus 263 -~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~----~gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 263 -ASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGE----YGRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp -CCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTT----SSCEEEEEEEETTEEEEEE
T ss_pred -CCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCC----CCCccEEEECCCCcEEEEE
Confidence 356677776 3566666656666766666543321 111111 1223447778887765543
No 324
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.01 E-value=0.021 Score=59.15 Aligned_cols=261 Identities=10% Similarity=0.085 Sum_probs=151.2
Q ss_pred ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecc-cccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeE
Q 010470 225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTL-YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH 303 (510)
Q Consensus 225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 303 (510)
...|.++.-+.+| +|..|+.+| +..||-...+..... ......|.++....+| .|.+++.+| +..||..+.+...
T Consensus 21 ~n~V~~I~qD~~G-~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~ 96 (758)
T 3ott_A 21 ASVVSCFLQDSEG-LIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ 96 (758)
T ss_dssp CCCEEEEEECTTS-CEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC
T ss_pred cceEEEEEECCCC-CEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC
Confidence 4579999998887 566667777 666774322111111 1224568888877766 466666655 7899987764332
Q ss_pred eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee-----ecCceeEEEEcCCCCEEEEecCCCcEEEE
Q 010470 304 TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII-----FHSNCNALAFSMDGQTIFSGHIDGNLRLW 378 (510)
Q Consensus 304 ~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~dg~i~i~ 378 (510)
........|.++.. . + ..|..++.+ .+..+|..++....... ....+.++....+|.+.+ |+.+ -|..|
T Consensus 97 ~~~~~~~~i~~i~~-~-~-g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~ 170 (758)
T 3ott_A 97 PETDFPTDVRTMAL-Q-G-DTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRY 170 (758)
T ss_dssp CSCCCCSCEEEEEE-E-T-TEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEE
T ss_pred cccCCCceEEEEEe-c-C-CcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhC
Confidence 11112335766654 2 3 456666655 68899987665432211 123477888877777555 5544 48888
Q ss_pred ECCCCceeeeeccc-----ccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCC
Q 010470 379 DIQTGKLLSEVAAH-----SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES 453 (510)
Q Consensus 379 d~~~~~~~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 453 (510)
|..+++... +... ....|.++...+++..|..|+. +-+..||..++......... ...+.++....+|.
T Consensus 171 ~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~----~~~i~~i~~d~~g~ 244 (758)
T 3ott_A 171 IPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFH----NNSIKSLALDGNGD 244 (758)
T ss_dssp ETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEE----EEEEEEEEECTTCC
T ss_pred ccCCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCC----CCeEEEEEEcCCCC
Confidence 987665322 2111 1134888988887776666664 45888898776543221111 12244466677776
Q ss_pred EEEEEcCCCeEEEEeCCCcceeeccc-------ccCcCEEEEEEeCCCCcEEEeeCCC
Q 010470 454 YVAAGSADGSVYIWSISKADIVRTLK-------EHTAPVLSCSWSGLGKPLASADKNG 504 (510)
Q Consensus 454 ~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~dg 504 (510)
+.+ |+.+| +.+++..++....... .....|.++....+|.+ -.|+..|
T Consensus 245 lWi-gT~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l-WiGT~~G 299 (758)
T 3ott_A 245 LLA-GTDNG-LYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNI-WLGTDYG 299 (758)
T ss_dssp EEE-EETTE-EEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCE-EEEESSS
T ss_pred EEE-EeCCc-eeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCE-EEEeCCc
Confidence 655 44455 8889876654321110 12346888888877763 3344445
No 325
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=98.00 E-value=0.00094 Score=60.67 Aligned_cols=211 Identities=10% Similarity=0.058 Sum_probs=109.9
Q ss_pred EEEEEeC--CCeEEEEEcCCCCeeEe--ecCCCCceEEEEEecCCCCEEEEEeCC----CcEEEEECCCCeEeeeeeecC
Q 010470 281 SVIAASS--SNNLYVWDVNSGRVRHT--LTGHTDKVCAVDVSKISSRHVVSAAYD----RTLKVWDLHKGYCVNTIIFHS 352 (510)
Q Consensus 281 ~l~~~~~--d~~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~ 352 (510)
.++.|+. ...+.+||..+++-... +......-..+ . . ++.+++.|+.+ ..+.+||+.++.....-..+.
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~-~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACV-F-W-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEE-E-E-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEE-E-E-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 4455553 35788999887653322 11111111222 2 2 56677777754 678999998876544332222
Q ss_pred c--eeEEEEcCCCCEEEEecCC------CcEEEEECCCCceeeeeccccc-ccEEEEEEcCCCCEEEEEec---------
Q 010470 353 N--CNALAFSMDGQTIFSGHID------GNLRLWDIQTGKLLSEVAAHSL-AAVTSISLSRSGNIILTSGR--------- 414 (510)
Q Consensus 353 ~--i~~i~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~--------- 414 (510)
. -.+++. .++..++.|+.+ ..+.+||+.+.+-...-..+.. .....+. .++.+++.|+.
T Consensus 91 ~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~ 167 (306)
T 3ii7_A 91 PRDSLAACA-AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRV 167 (306)
T ss_dssp CCBSCEEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEE
T ss_pred cccceeEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccc
Confidence 1 122222 267777777754 4589999887653222111110 1122222 25666666653
Q ss_pred CCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC-----CeEEEEeCCCcc--eeecccccCcCEEE
Q 010470 415 DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD-----GSVYIWSISKAD--IVRTLKEHTAPVLS 487 (510)
Q Consensus 415 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~--~~~~~~~~~~~v~~ 487 (510)
-..+.+||+.+..-...-........ . .+..-++++++.|+.+ ..+.+||+.+.+ .+..+.........
T Consensus 168 ~~~~~~yd~~~~~W~~~~~~p~~r~~--~--~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 243 (306)
T 3ii7_A 168 LNSCEVYDPATETWTELCPMIEARKN--H--GLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKC 243 (306)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBS--C--EEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEE
T ss_pred cceEEEeCCCCCeEEECCCccchhhc--c--eEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeE
Confidence 34588999987654322211111111 1 2223367777777654 358999987753 23333222222233
Q ss_pred EEEeCCCCcEEEeeCC
Q 010470 488 CSWSGLGKPLASADKN 503 (510)
Q Consensus 488 ~~~~~~~~~l~s~~~d 503 (510)
+.+ ++.+++.||.+
T Consensus 244 ~~~--~~~i~v~GG~~ 257 (306)
T 3ii7_A 244 AAV--GSIVYVLAGFQ 257 (306)
T ss_dssp EEE--TTEEEEEECBC
T ss_pred EEE--CCEEEEEeCcC
Confidence 333 66777777754
No 326
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.97 E-value=0.0006 Score=72.47 Aligned_cols=250 Identities=10% Similarity=0.101 Sum_probs=143.9
Q ss_pred CCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEE
Q 010470 246 DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHV 325 (510)
Q Consensus 246 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 325 (510)
..+|.|.|+.++..+..-.- .--+.-.+|..+.++.-. ..++.|||+.+...+..+.- ..+|.--.|.. .+.|
T Consensus 47 ~~~vvIidl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis--~~~l 119 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTV 119 (1630)
T ss_pred CceEEEEECCCCCCcccccc---cchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecC--CCee
Confidence 44799999987654322111 112344577776555544 67999999998877776663 45677777764 4555
Q ss_pred EEEeCCCcEEEEECCC-CeEeeeeeec-----CceeEEEEcCCCCEEEEec-------CCCcEEEEECCCCceeeeeccc
Q 010470 326 VSAAYDRTLKVWDLHK-GYCVNTIIFH-----SNCNALAFSMDGQTIFSGH-------IDGNLRLWDIQTGKLLSEVAAH 392 (510)
Q Consensus 326 ~s~~~dg~i~iwd~~~-~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~ 392 (510)
+..+ +..|+.|++.. ..++..+..+ ..|..-..+++.++++..+ -.|.+.+|....+ ..+.+.+|
T Consensus 120 ~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegh 197 (1630)
T 1xi4_A 120 ALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH 197 (1630)
T ss_pred EEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHh
Confidence 5444 56899999964 2344444333 3467777788888877432 3578889987543 23333333
Q ss_pred ccccEEEEEEc--CC-CCEEEEEec---CCcEEEEEcCCc---eee------eEeecCCCeeecCceeEEEcCCCCEEEE
Q 010470 393 SLAAVTSISLS--RS-GNIILTSGR---DNLHNLFDIRSL---EVC------GSLRATGNRVASNWSRSCISPDESYVAA 457 (510)
Q Consensus 393 ~~~~i~~i~~~--~~-~~~l~~~~~---d~~i~i~d~~~~---~~~------~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 457 (510)
. +....+.+. +. ...++.+.. .+.++|.++... ... ..+..+ .....-...+.+|+.-..++.
T Consensus 198 a-~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~-~~~~Dfpv~~~vs~k~g~iy~ 275 (1630)
T 1xi4_A 198 A-ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP-EAQNDFPVAMQISEKHDVVFL 275 (1630)
T ss_pred H-hhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCc-ccccCcceEEEeccccCEEEE
Confidence 2 222222221 11 122222222 368888887542 110 111111 111111223667787788888
Q ss_pred EcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeE
Q 010470 458 GSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVV 506 (510)
Q Consensus 458 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i 506 (510)
-+.-|.|++||+.++.++..-+-...+|...+-++...-++.....|.|
T Consensus 276 itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~v 324 (1630)
T 1xi4_A 276 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324 (1630)
T ss_pred EecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceE
Confidence 8999999999999998876655555555555444433334444455544
No 327
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.90 E-value=0.025 Score=60.83 Aligned_cols=238 Identities=10% Similarity=0.132 Sum_probs=130.4
Q ss_pred ccceEEEEEecC----CCEEEEee---CCCeEEEEeCCCCc-cee--cccccccceeEEEEe---cCCCEEEEEeCCCeE
Q 010470 225 EGGCASILFEYN----SARLISGG---QDKSIKLWDTNTGS-LSS--TLYGCLGSVLDLAIT---HDNRSVIAASSSNNL 291 (510)
Q Consensus 225 ~~~v~~~~~s~~----~~~l~s~~---~dg~i~iwd~~~~~-~~~--~~~~~~~~v~~~~~~---~~~~~l~~~~~d~~i 291 (510)
-+||..++.... ...|++++ .+|.++++...=+- ... .+. ....++.+... +.+.+|+.+..+.+
T Consensus 374 ~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi~~~~~~~~~l~-gv~~iWtl~~~~~~~~~~yLvlS~~~~T- 451 (1158)
T 3ei3_A 374 LGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLP-GIKGLWPLRSDPNRETDDTLVLSFVGQT- 451 (1158)
T ss_dssp CCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEEESBCEEEEEEECCC-SCCEEEEECCCSSCSSCCEEEEEETTEE-
T ss_pred cCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEEecCCCEEEEEeecCC-CccEEEEEeecCCCCCCCEEEEECCCCe-
Confidence 357888877532 23555544 35778877532111 111 222 22455555432 23567777776665
Q ss_pred EEEEcCCCCeeEee--cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC--ceeEEEEcCCCCEEE
Q 010470 292 YVWDVNSGRVRHTL--TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS--NCNALAFSMDGQTIF 367 (510)
Q Consensus 292 ~iwd~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~i~~i~~~~~~~~l~ 367 (510)
.|+.+.. ..+... .+.......+......+..++=.. ...|++.+...+..+..+..+. .|...+.+ +..++
T Consensus 452 ~Vl~i~~-e~veev~~~gf~~~~~TL~~~~l~~~~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vv 527 (1158)
T 3ei3_A 452 RVLMLNG-EEVEETELMGFVDDQQTFFCGNVAHQQLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVV 527 (1158)
T ss_dssp EEEEEET-TEEEEECCTTCCSSSCEEEEEEETTTEEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEE
T ss_pred EEEEEeC-CcccccccccccCCCCcEEEEEcCCCeEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEE
Confidence 5665532 222222 122112222222221233444444 4567888876655565555443 46666654 45666
Q ss_pred EecCCCcEEEEECCCCceeeeecccccccEEEEEEcCC------CCEEEEEec-CCcEEEEEcCCceeeeEeecCCCeee
Q 010470 368 SGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRS------GNIILTSGR-DNLHNLFDIRSLEVCGSLRATGNRVA 440 (510)
Q Consensus 368 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~------~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~ 440 (510)
.++ ++.+.++.+..+.........-...|.|+++.|. +.++++|.. |++++|+++.+.+.+...........
T Consensus 528 va~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p 606 (1158)
T 3ei3_A 528 VAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIP 606 (1158)
T ss_dssp EEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCE
T ss_pred EEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCC
Confidence 664 6788888876654322211112268999999863 468999996 99999999998776655443322222
Q ss_pred cCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470 441 SNWSRSCISPDESYVAAGSADGSVYIWSIS 470 (510)
Q Consensus 441 ~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 470 (510)
..+.-+.+ ....+|.+|-.||.+.-+.++
T Consensus 607 ~si~l~~~-~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 607 RSILMTTF-ESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp EEEEEEEE-TTEEEEEEEETTSEEEEEEEC
T ss_pred cEEEEEEe-CCCcEEEEEeCCCeEEEEEEc
Confidence 22222233 244688899999987655543
No 328
>4gdk_C APG16-like 1, autophagy-related protein 16-1; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_C
Probab=97.88 E-value=3.8e-06 Score=46.35 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhhhhhhcccchhhHhhcCcc
Q 010470 11 IKHALKALRKRHLVEEGAHAPAIIALSRPI 40 (510)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (510)
++|++++||+||+.|...|+.+|.+||+.+
T Consensus 7 rr~I~~~Lr~RdR~q~~~F~diI~~yNkLl 36 (36)
T 4gdk_C 7 KRHISEQLRRRDRLQRQAFEEIILQYNKLL 36 (36)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcccC
Confidence 578999999999999999999999999764
No 329
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.85 E-value=0.0035 Score=57.25 Aligned_cols=223 Identities=13% Similarity=0.107 Sum_probs=112.7
Q ss_pred EEEEeeCCCeEEEEeCCCCcceec-ccccccceeEEEEecCCCEEEEEeC----CC-------eEEEEEcCCCCeeEe--
Q 010470 239 RLISGGQDKSIKLWDTNTGSLSST-LYGCLGSVLDLAITHDNRSVIAASS----SN-------NLYVWDVNSGRVRHT-- 304 (510)
Q Consensus 239 ~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~----d~-------~i~iwd~~~~~~~~~-- 304 (510)
+++.|+. .+..||..+++-... +..........+...++..++.|+. ++ .+.+||..+++-...
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 4444543 478899887764331 1111111222333457777777773 11 277888876653322
Q ss_pred ecCCCCceEEEEEecCCCCEEEEEeCC-------CcEEEEECCCCeEeeeeeecCc--eeEEEEcCCCCEEEEecC----
Q 010470 305 LTGHTDKVCAVDVSKISSRHVVSAAYD-------RTLKVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFSGHI---- 371 (510)
Q Consensus 305 ~~~~~~~v~~i~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~---- 371 (510)
+...... .++... ++.+++.|+.+ ..+.+||+.+.+....-..+.. -.+++. .++.+++.|+.
T Consensus 96 ~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~ 171 (318)
T 2woz_A 96 LPSARCL-FGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDK 171 (318)
T ss_dssp BSSCBCS-CEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSS
T ss_pred CCccccc-cceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCC
Confidence 1111111 122222 56777777754 3588899988765443222221 122222 46777777763
Q ss_pred --CCcEEEEECCCCceeeeeccccc-ccEEEEEEcCCCCEEEEEecC-----CcEEEEEcCCceeeeEeecCCCeeecCc
Q 010470 372 --DGNLRLWDIQTGKLLSEVAAHSL-AAVTSISLSRSGNIILTSGRD-----NLHNLFDIRSLEVCGSLRATGNRVASNW 443 (510)
Q Consensus 372 --dg~i~i~d~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 443 (510)
-..+.+||+.+.+-...-..... .....+.+ ++.+++.|+.+ ..+.+||+.+..-...-..+....
T Consensus 172 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~---- 245 (318)
T 2woz_A 172 KCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERS---- 245 (318)
T ss_dssp CBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCB----
T ss_pred CccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCccc----
Confidence 23599999987653222111110 11222222 56777777644 357789987754332211111111
Q ss_pred eeEEEcCCCCEEEEEcCC--------------CeEEEEeCCCcc
Q 010470 444 SRSCISPDESYVAAGSAD--------------GSVYIWSISKAD 473 (510)
Q Consensus 444 ~~~~~s~~~~~l~~~~~d--------------g~i~iwd~~~~~ 473 (510)
...+...++.+++.|+.+ ..+.+||+.+.+
T Consensus 246 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 246 SISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp SCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred ceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 112233467777777654 357788877643
No 330
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.85 E-value=0.0016 Score=59.22 Aligned_cols=215 Identities=13% Similarity=0.058 Sum_probs=108.1
Q ss_pred CCCEEEEEeC----CCeEEEEEcCCCCeeEe--ecCCCCceEEEEEecCCCCEEEEEeC----C-----CcEEEEECCCC
Q 010470 278 DNRSVIAASS----SNNLYVWDVNSGRVRHT--LTGHTDKVCAVDVSKISSRHVVSAAY----D-----RTLKVWDLHKG 342 (510)
Q Consensus 278 ~~~~l~~~~~----d~~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~l~s~~~----d-----g~i~iwd~~~~ 342 (510)
++..++.|+. -..+.+||+.+++-... +...... .++... ++.+++.|+. + ..+.+||+.+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSG-LAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccccc-ceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 4455555552 23678888776653221 1111111 122222 5667777765 2 46889999887
Q ss_pred eEeeeeeecCc--eeEEEEcCCCCEEEEecCC-----CcEEEEECCCCceeeeecccc-cccEEEEEEcCCCCEEEEEec
Q 010470 343 YCVNTIIFHSN--CNALAFSMDGQTIFSGHID-----GNLRLWDIQTGKLLSEVAAHS-LAAVTSISLSRSGNIILTSGR 414 (510)
Q Consensus 343 ~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~ 414 (510)
.....-..+.. -.+++. .++..++.|+.+ ..+.+||+.+.+-...-.... ......+.+ ++.+++.|+.
T Consensus 101 ~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~ 177 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGV-IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF 177 (308)
T ss_dssp EEEECCCCSSCCBTCEEEE-ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred eEeECCCCCcCccccEEEE-ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence 64433222211 122222 267777777643 368899987764322211111 012222222 5677777765
Q ss_pred C-----CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC-----CeEEEEeCCCcce--eecccccC
Q 010470 415 D-----NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD-----GSVYIWSISKADI--VRTLKEHT 482 (510)
Q Consensus 415 d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~--~~~~~~~~ 482 (510)
+ +.+.+||+.+..-...-..+... ... .+..-++.+++.|+.+ ..+.+||+.+.+- +..+....
T Consensus 178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r--~~~--~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r 253 (308)
T 1zgk_A 178 DGTNRLNSAECYYPERNEWRMITAMNTIR--SGA--GVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRR 253 (308)
T ss_dssp CSSCBCCCEEEEETTTTEEEECCCCSSCC--BSC--EEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCC
T ss_pred CCCCcCceEEEEeCCCCeEeeCCCCCCcc--ccc--eEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCc
Confidence 4 46889998876543221111111 111 1222367777887764 4699999877532 22222211
Q ss_pred cCEEEEEEeCCCCcEEEeeCCC
Q 010470 483 APVLSCSWSGLGKPLASADKNG 504 (510)
Q Consensus 483 ~~v~~~~~~~~~~~l~s~~~dg 504 (510)
.....+.+ ++.+++.||.++
T Consensus 254 ~~~~~~~~--~~~i~v~GG~~~ 273 (308)
T 1zgk_A 254 SALGITVH--QGRIYVLGGYDG 273 (308)
T ss_dssp BSCEEEEE--TTEEEEECCBCS
T ss_pred cceEEEEE--CCEEEEEcCcCC
Confidence 22222232 567777777543
No 331
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.83 E-value=0.002 Score=59.96 Aligned_cols=233 Identities=10% Similarity=0.041 Sum_probs=114.8
Q ss_pred CCCEEEEeeCC-CeEEEEeCCC--Ccc--eeccc-ccccceeEEEEecCCCEEEEEeC-C---------CeEEEEEcCCC
Q 010470 236 NSARLISGGQD-KSIKLWDTNT--GSL--SSTLY-GCLGSVLDLAITHDNRSVIAASS-S---------NNLYVWDVNSG 299 (510)
Q Consensus 236 ~~~~l~s~~~d-g~i~iwd~~~--~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-d---------~~i~iwd~~~~ 299 (510)
++.+++.||.+ ..+.+||+.+ .+- +..+. ..... .+++. -++.+++.|+. + +.+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQ-ATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBS-CEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCcc-ceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 56666777643 4688899864 221 22222 11111 12222 25666776665 2 46889998876
Q ss_pred CeeEeecCC-CCce-EEEEEecCCCCEEEEEeCC---------------------------------------CcEEEEE
Q 010470 300 RVRHTLTGH-TDKV-CAVDVSKISSRHVVSAAYD---------------------------------------RTLKVWD 338 (510)
Q Consensus 300 ~~~~~~~~~-~~~v-~~i~~~~~~~~~l~s~~~d---------------------------------------g~i~iwd 338 (510)
+-...-... .... .++.. . ++.+++.|+.+ ..+.+||
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFV-H-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEE-E-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred cEEECCCCCCcccccceEEE-E-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 533221111 1111 12222 2 57778888754 5789999
Q ss_pred CCCCeEeeeeeecC--ce-eEEEEcCCCCEEEEecC------CCcEEEEEC--CCCceee--eecccccccEEEEEEcCC
Q 010470 339 LHKGYCVNTIIFHS--NC-NALAFSMDGQTIFSGHI------DGNLRLWDI--QTGKLLS--EVAAHSLAAVTSISLSRS 405 (510)
Q Consensus 339 ~~~~~~~~~~~~~~--~i-~~i~~~~~~~~l~~~~~------dg~i~i~d~--~~~~~~~--~~~~~~~~~i~~i~~~~~ 405 (510)
+.+.+....-..+. .. .+++.. ++.+++.|+. ...+.+||+ .+..-.. .+.... ......+...+
T Consensus 175 ~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~-~~~~~~~~~~~ 252 (357)
T 2uvk_A 175 PSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPD-GVAGGFAGISN 252 (357)
T ss_dssp TTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTT-CCBSCEEEEET
T ss_pred CCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCc-ccccceEEEEC
Confidence 98876544433221 12 233332 5666677653 345778887 3332211 111111 11111122235
Q ss_pred CCEEEEEecC----------------------CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCC-
Q 010470 406 GNIILTSGRD----------------------NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADG- 462 (510)
Q Consensus 406 ~~~l~~~~~d----------------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg- 462 (510)
+.+++.|+.+ ..+.+||+.+..-...-..+..... ..++..++++++.|+.++
T Consensus 253 ~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~----~~~~~~~~~i~v~GG~~~~ 328 (357)
T 2uvk_A 253 DSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY----GVSLPWNNSLLIIGGETAG 328 (357)
T ss_dssp TEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBS----SEEEEETTEEEEEEEECGG
T ss_pred CEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccc----ceeEEeCCEEEEEeeeCCC
Confidence 6677777632 2577899876443222111111111 133445778888887643
Q ss_pred -----eEEEEeCCCcceeecc
Q 010470 463 -----SVYIWSISKADIVRTL 478 (510)
Q Consensus 463 -----~i~iwd~~~~~~~~~~ 478 (510)
.|.++++++++.+...
T Consensus 329 ~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 329 GKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp GCEEEEEEEEEC-CCSCEEEC
T ss_pred CCEeeeEEEEEEcCcEeEeee
Confidence 4666788777665443
No 332
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.82 E-value=0.0022 Score=58.44 Aligned_cols=210 Identities=13% Similarity=0.097 Sum_probs=106.6
Q ss_pred EEEEeCCCeEEEEEcCCCCeeE-eecCCCCceEEEEEecCCCCEEEEEeC-----C------CcEEEEECCCCeEeeeee
Q 010470 282 VIAASSSNNLYVWDVNSGRVRH-TLTGHTDKVCAVDVSKISSRHVVSAAY-----D------RTLKVWDLHKGYCVNTII 349 (510)
Q Consensus 282 l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~s~~~-----d------g~i~iwd~~~~~~~~~~~ 349 (510)
++.|+ ..+.+||..+++-.. .+.............. ++.+++.|+. . ..+.+||+.+++....-.
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 34444 579999998876432 2221112222222223 6777777773 1 137889998876533322
Q ss_pred ecCc--eeEEEEcCCCCEEEEecCC--------CcEEEEECCCCceeeeeccccc-ccEEEEEEcCCCCEEEEEec-C--
Q 010470 350 FHSN--CNALAFSMDGQTIFSGHID--------GNLRLWDIQTGKLLSEVAAHSL-AAVTSISLSRSGNIILTSGR-D-- 415 (510)
Q Consensus 350 ~~~~--i~~i~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~-d-- 415 (510)
.+.+ -.+++.. ++..++.|+.+ ..+.+||+.+.+-...-..+.. .....+. .++.+++.|+. +
T Consensus 85 ~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 85 LPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDR 161 (315)
T ss_dssp BSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTS
T ss_pred CCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCC
Confidence 2221 1122222 56666777632 3589999987642221111110 1122222 35667777775 2
Q ss_pred ---CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCC-----eEEEEeCCCcc--eeecccccCcCE
Q 010470 416 ---NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADG-----SVYIWSISKAD--IVRTLKEHTAPV 485 (510)
Q Consensus 416 ---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~--~~~~~~~~~~~v 485 (510)
+.+.+||+.+..-...-..+..... ..+...++++++.|+.++ .+.+||+.+.+ .+..+.......
T Consensus 162 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~----~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 237 (315)
T 4asc_A 162 KCLNKMCVYDPKKFEWKELAPMQTARSL----FGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSL 237 (315)
T ss_dssp CBCCCEEEEETTTTEEEECCCCSSCCBS----CEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSC
T ss_pred cccceEEEEeCCCCeEEECCCCCCchhc----eEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccce
Confidence 4688999887643322111111111 122233677777777654 58899987753 222222222222
Q ss_pred EEEEEeCCCCcEEEeeCC
Q 010470 486 LSCSWSGLGKPLASADKN 503 (510)
Q Consensus 486 ~~~~~~~~~~~l~s~~~d 503 (510)
..+.+ ++.+++.||.+
T Consensus 238 ~~~~~--~~~l~v~GG~~ 253 (315)
T 4asc_A 238 SLVSL--VGTLYAIGGFA 253 (315)
T ss_dssp EEEEE--TTEEEEEEEEE
T ss_pred eEEEE--CCEEEEECCcc
Confidence 23333 56677777764
No 333
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.0024 Score=58.09 Aligned_cols=189 Identities=12% Similarity=0.110 Sum_probs=109.0
Q ss_pred CEEEEeeCCCeEEEEeCCCCcceeccccc-ccceeEEEE--ecCCCEEEEE--eCCCeEEEEEcCCCCeeEeecC----C
Q 010470 238 ARLISGGQDKSIKLWDTNTGSLSSTLYGC-LGSVLDLAI--THDNRSVIAA--SSSNNLYVWDVNSGRVRHTLTG----H 308 (510)
Q Consensus 238 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~--~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~----~ 308 (510)
..++.++.||.|.-+|..+|+...++... ..++....- .+.+..++.+ +.||.|+.++..+|.....+.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47889999999999999999988777643 122221110 0112234444 5899999999888855443321 1
Q ss_pred CCceEEEEEec--------CCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCcee--------EEEEc-----CCCCEEE
Q 010470 309 TDKVCAVDVSK--------ISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCN--------ALAFS-----MDGQTIF 367 (510)
Q Consensus 309 ~~~v~~i~~~~--------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~--------~i~~~-----~~~~~l~ 367 (510)
..++.. .-.| ..+..+++|+.+|.+...|+.+|+.+..+....... |.... ..+..++
T Consensus 91 ~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 91 TSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred cccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 222221 0000 035688999999999999999999999887553211 11110 1245677
Q ss_pred EecCCCcEEEEECCCCceeeeeccccc--ccEE-----EEEEcCCCCEEEEEecCCcEEEEEcCCceeee
Q 010470 368 SGHIDGNLRLWDIQTGKLLSEVAAHSL--AAVT-----SISLSRSGNIILTSGRDNLHNLFDIRSLEVCG 430 (510)
Q Consensus 368 ~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~i~-----~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 430 (510)
.|..+..+.+.+ ++|+ ...+..... ..+. +...+.++.+ ++++.||.|.-+|..++....
T Consensus 170 ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 170 IGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred EecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 777777777777 4554 322211000 0000 0001123555 446778888888887777654
No 334
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.66 E-value=0.046 Score=52.39 Aligned_cols=104 Identities=10% Similarity=0.087 Sum_probs=63.1
Q ss_pred ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc--eecccc------cccceeEEEEecC---CCEEEEEeC------
Q 010470 225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL--SSTLYG------CLGSVLDLAITHD---NRSVIAASS------ 287 (510)
Q Consensus 225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~------~~~~v~~~~~~~~---~~~l~~~~~------ 287 (510)
-....+|+|.|+|+++++-...+.|++++..++.. +..+.. ..+....|+|+|+ +..|+++..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 34577999999998777765445799888655543 222211 2456789999996 555655542
Q ss_pred -------CCeEEEEEcCCC--C-----eeE-eec-CCCCceEEEEEecCCCCEEEEEe
Q 010470 288 -------SNNLYVWDVNSG--R-----VRH-TLT-GHTDKVCAVDVSKISSRHVVSAA 329 (510)
Q Consensus 288 -------d~~i~iwd~~~~--~-----~~~-~~~-~~~~~v~~i~~~~~~~~~l~s~~ 329 (510)
...|.-|++..+ . .+. .+. ........+.|.| ++.++++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEEC
Confidence 235666665432 1 111 122 1223468899999 677666654
No 335
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.65 E-value=0.039 Score=51.24 Aligned_cols=235 Identities=12% Similarity=0.173 Sum_probs=144.0
Q ss_pred EEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC-CCeeEeecCC
Q 010470 230 SILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS-GRVRHTLTGH 308 (510)
Q Consensus 230 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~ 308 (510)
+.-.+|..+.+|.=. ..++.|||+++...++.+.- ...|..-.|-.+.. |...+ +..|+-|++.. ..+.+.+.-|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~~-l~lVT-~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETTE-EEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCCCe-EEEEc-CCeeEEecccCCCCchhheecc
Confidence 344577777776665 67999999999888777654 34566667764443 33333 45899999974 3466666544
Q ss_pred ----CCceEEEEEecCCCCEEEEEe-------CCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCC-----EEEEecC-
Q 010470 309 ----TDKVCAVDVSKISSRHVVSAA-------YDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQ-----TIFSGHI- 371 (510)
Q Consensus 309 ----~~~v~~i~~~~~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~-----~l~~~~~- 371 (510)
...|.....++ +.+.++..| -.|.+.+|..+.+. .+.+.+|.. .-..+-.+|+ .++.+..
T Consensus 146 ~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa-~F~~~~~~g~~~~~~lf~fa~r~ 222 (494)
T 1bpo_A 146 SSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAA-SFAQFKMEGNAEESTLFCFAVRG 222 (494)
T ss_dssp GGGTTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEE-EEEEEECTTCSSEEEEEEEEECS
T ss_pred hhcccceEEEEEECC-CCCeEEEEeecccCCcccceEEEeeccccc-cchheeeee-eeEEEecCCCCCCceEEEEEEec
Confidence 34566777777 556555333 24788899887543 233333321 1111212221 2332322
Q ss_pred --CCcEEEEECCCC---ce-----eeeecc---cccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCe
Q 010470 372 --DGNLRLWDIQTG---KL-----LSEVAA---HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNR 438 (510)
Q Consensus 372 --dg~i~i~d~~~~---~~-----~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 438 (510)
.+.++|.++... .+ ...+.. ....-..++.+++....++.-+.-|.+++||+.++..+..-+.....
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~ 302 (494)
T 1bpo_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGET 302 (494)
T ss_dssp TTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred CCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCc
Confidence 378999988543 11 111111 11356778999999999999999999999999999988777666555
Q ss_pred eecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccee
Q 010470 439 VASNWSRSCISPDESYVAAGSADGSVYIWSISKADIV 475 (510)
Q Consensus 439 ~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 475 (510)
+.. .+.+....-+++....|.|.-..++....+
T Consensus 303 iF~----t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 303 IFV----TAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp EEE----EEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred eEE----ecccCCCCcEEEEccCceEEEEEEccccch
Confidence 542 333344444455557777777766655443
No 336
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.63 E-value=0.031 Score=49.77 Aligned_cols=234 Identities=12% Similarity=0.177 Sum_probs=142.8
Q ss_pred EEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC-CCeeEeecCC-
Q 010470 231 ILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS-GRVRHTLTGH- 308 (510)
Q Consensus 231 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~- 308 (510)
.-.+|..+.+|.-. ...+.|||+++...++.+.- ...|.-=.|-.+.. |...+ +..|+-|++.. ..+.+.+.-|
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~~-L~lVT-~taVyHWs~~~~s~P~kvFdR~~ 147 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHS 147 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSE-EEEEE-SSEEEEEESSTTCCCEEEEECCG
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCCCe-EEEEc-CCcEEEEcccCCCCCceeeecch
Confidence 34578877777665 67899999999988777654 45676677765443 33333 34899999975 3466666544
Q ss_pred ---CCceEEEEEecCCCCEEEEEe-------CCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCC-----EEEEec---
Q 010470 309 ---TDKVCAVDVSKISSRHVVSAA-------YDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQ-----TIFSGH--- 370 (510)
Q Consensus 309 ---~~~v~~i~~~~~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~-----~l~~~~--- 370 (510)
...|.....++ +.+.++..+ -.|.+.+|..+.+. .+.+.+|.. .-..+-.+|+ .++.+.
T Consensus 148 ~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa-~F~~~~~~g~~~~~~lf~fa~r~~ 224 (365)
T 2xzh_A 148 SLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAA-SFAQFKMEGNAEESTLFCFAVRGQ 224 (365)
T ss_dssp GGTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEE-EEEEECCTTCSSCEEEEEEEEEET
T ss_pred hcccceEEEEEECC-CCCEEEEEeEeccCCccceeEEEEeecccc-cceeeeeee-eeEEEecCCCCCCceEEEEEEecC
Confidence 34566667776 555544333 24788899887543 233333321 1112222222 223222
Q ss_pred CCCcEEEEECCCC---ce-----eeeec-c--cccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCee
Q 010470 371 IDGNLRLWDIQTG---KL-----LSEVA-A--HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRV 439 (510)
Q Consensus 371 ~dg~i~i~d~~~~---~~-----~~~~~-~--~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 439 (510)
..+.+++.++... .+ ...+. . ....-..++..++....++.-+.-|.+++||+.++.++..-+.....+
T Consensus 225 ~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~i 304 (365)
T 2xzh_A 225 AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETI 304 (365)
T ss_dssp TEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred CCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCce
Confidence 2368899888432 11 11111 1 113567789999999999999999999999999999887776666555
Q ss_pred ecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccee
Q 010470 440 ASNWSRSCISPDESYVAAGSADGSVYIWSISKADIV 475 (510)
Q Consensus 440 ~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 475 (510)
.. .+.+....-+++....|.|.-..++....+
T Consensus 305 F~----ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~iv 336 (365)
T 2xzh_A 305 FV----TAPHEATAGIIGVNRKGQVLSVCVEEENII 336 (365)
T ss_dssp EE----EEEEGGGTEEEEEETTCEEEEEEECTTTHH
T ss_pred EE----ecccCCCCcEEEEcCCCEEEEEEECcccEe
Confidence 42 233333334444456777776666655443
No 337
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.61 E-value=0.0064 Score=55.43 Aligned_cols=205 Identities=12% Similarity=0.062 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCeeE-eecCCCCceEEEEEecCCCCEEEEEeC----CC-------cEEEEECCCCeEeeeeeecCc--ee
Q 010470 290 NLYVWDVNSGRVRH-TLTGHTDKVCAVDVSKISSRHVVSAAY----DR-------TLKVWDLHKGYCVNTIIFHSN--CN 355 (510)
Q Consensus 290 ~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~s~~~----dg-------~i~iwd~~~~~~~~~~~~~~~--i~ 355 (510)
.+..||..+++-.. .+.............. ++.+++.|+. ++ .+.+||..+++....-..+.+ -.
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence 47889988776433 1111111112222223 6777777773 12 277899887765433222211 12
Q ss_pred EEEEcCCCCEEEEecCC-------CcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEec------CCcEEEEE
Q 010470 356 ALAFSMDGQTIFSGHID-------GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR------DNLHNLFD 422 (510)
Q Consensus 356 ~i~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~------d~~i~i~d 422 (510)
+++.. ++..++.|+.+ ..+.+||+.+.+-...-..+....-.+++. .++.+++.|+. -+.+.+||
T Consensus 104 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd 181 (318)
T 2woz_A 104 GLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYN 181 (318)
T ss_dssp EEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEE
T ss_pred ceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEc
Confidence 22222 56777777653 248889987765332211111001111222 45667777764 24689999
Q ss_pred cCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC-----CeEEEEeCCCcc--eeecccccCcCEEEEEEeCCCC
Q 010470 423 IRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD-----GSVYIWSISKAD--IVRTLKEHTAPVLSCSWSGLGK 495 (510)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~ 495 (510)
+.+..-...-..+.... .. .+..-++.+++.|+.+ ..+.+||+.+.+ .+..+.........+.+ ++.
T Consensus 182 ~~~~~W~~~~~~p~~r~--~~--~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~ 255 (318)
T 2woz_A 182 PKKGDWKDLAPMKTPRS--MF--GVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL--AGS 255 (318)
T ss_dssp TTTTEEEEECCCSSCCB--SC--EEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE--TTE
T ss_pred CCCCEEEECCCCCCCcc--cc--eEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE--CCE
Confidence 98765433211111111 11 1222367777777643 357889987653 22223222222222232 566
Q ss_pred cEEEeeCC
Q 010470 496 PLASADKN 503 (510)
Q Consensus 496 ~l~s~~~d 503 (510)
+++.||.+
T Consensus 256 i~v~GG~~ 263 (318)
T 2woz_A 256 LYAIGGFA 263 (318)
T ss_dssp EEEECCBC
T ss_pred EEEECCee
Confidence 77777754
No 338
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.58 E-value=0.044 Score=50.10 Aligned_cols=231 Identities=15% Similarity=0.080 Sum_probs=124.9
Q ss_pred ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCee--Eee----cCCCCceEEEEEecC--CCCEEEEE---eCCCcEE
Q 010470 267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR--HTL----TGHTDKVCAVDVSKI--SSRHVVSA---AYDRTLK 335 (510)
Q Consensus 267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~----~~~~~~v~~i~~~~~--~~~~l~s~---~~dg~i~ 335 (510)
-...+.|+|.|+|.++++--..|.|++++..++... ..+ .........++++|. .+..|+.. ..++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 345689999999986666555899999986655532 112 123456789999983 13444432 2355677
Q ss_pred EEECCCC----------eEee-eeee--cCceeEEEEcCCCCEEEEec-------------CCCcEEEEECCCCce----
Q 010470 336 VWDLHKG----------YCVN-TIIF--HSNCNALAFSMDGQTIFSGH-------------IDGNLRLWDIQTGKL---- 385 (510)
Q Consensus 336 iwd~~~~----------~~~~-~~~~--~~~i~~i~~~~~~~~l~~~~-------------~dg~i~i~d~~~~~~---- 385 (510)
-|.+..+ +.+. .+.. .+....+.|.|||.++++.+ ..|.|.-++.. ++.
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d-G~ip~~n 189 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD-GEPAPGN 189 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT-SSBCTTC
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC-CCccCCC
Confidence 7766541 1111 1211 23356799999998777643 24666666654 221
Q ss_pred ----eeeecccccccEEEEEEcCCCCEEEEEe-cCCcEEEEEcCCceeeeE--------eecCCCeee------cCceeE
Q 010470 386 ----LSEVAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDIRSLEVCGS--------LRATGNRVA------SNWSRS 446 (510)
Q Consensus 386 ----~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~--------~~~~~~~~~------~~~~~~ 446 (510)
...+.... .....++|+|+|.++++-. .++.-.|.-+..+....- ......++. ...+.+
T Consensus 190 Pf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~ 268 (347)
T 3das_A 190 PFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGI 268 (347)
T ss_dssp SSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEE
T ss_pred CCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcce
Confidence 11222222 4577899999887666543 222222222222211000 000000000 011234
Q ss_pred EEcCCCCEEEEEcCCCeEEEEeCCCcce----eecccccCcCEEEEEEeCCCCcEEEe
Q 010470 447 CISPDESYVAAGSADGSVYIWSISKADI----VRTLKEHTAPVLSCSWSGLGKPLASA 500 (510)
Q Consensus 447 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~s~ 500 (510)
+|. +|..++..-..+.|....+..... ...+.+....+.+|+..|||.++++.
T Consensus 269 ~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 269 AYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp EEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEE
T ss_pred EEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEE
Confidence 444 455666555566677666655432 22334445689999999999866553
No 339
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.56 E-value=0.062 Score=51.46 Aligned_cols=143 Identities=8% Similarity=0.123 Sum_probs=82.9
Q ss_pred cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCee--EeecC------CCCceEEEEEecC--CCCEEEEEeC-------
Q 010470 268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR--HTLTG------HTDKVCAVDVSKI--SSRHVVSAAY------- 330 (510)
Q Consensus 268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~------~~~~v~~i~~~~~--~~~~l~s~~~------- 330 (510)
...+.|+|.|+|+++++-...+.|++++..++... ..+.. .......++|+|. .+..|+.+..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 35579999999986665544457888876555532 22221 2356779999984 1444443332
Q ss_pred ------CCcEEEEECCCC--e-----Eeee-eee--cCceeEEEEcCCCCEEEEecC-----------------------
Q 010470 331 ------DRTLKVWDLHKG--Y-----CVNT-IIF--HSNCNALAFSMDGQTIFSGHI----------------------- 371 (510)
Q Consensus 331 ------dg~i~iwd~~~~--~-----~~~~-~~~--~~~i~~i~~~~~~~~l~~~~~----------------------- 371 (510)
...|.-|+...+ . .+.. +.. .+....++|.|||.++++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~ 186 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQE 186 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHH
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCcccccccccccccccccc
Confidence 235666665322 1 1111 111 134789999999987776432
Q ss_pred ---------CCcEEEEECCCCc-----------eeeeecccccccEEEEEEcCCCCEEEEE
Q 010470 372 ---------DGNLRLWDIQTGK-----------LLSEVAAHSLAAVTSISLSRSGNIILTS 412 (510)
Q Consensus 372 ---------dg~i~i~d~~~~~-----------~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 412 (510)
.|.|.-++.. +. ....+.... ..+..++|+|+|.++++-
T Consensus 187 ~~aq~~~~~~G~IlRi~~d-G~ip~~Npf~~~~~~ei~a~G~-RNp~gla~dp~G~L~~~d 245 (454)
T 1cru_A 187 LNGKDYHTYMGKVLRLNLD-GSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSE 245 (454)
T ss_dssp HHTTCCTTCSSEEEEECTT-SCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEE
T ss_pred ccccCCCCCCeeEEEEeCC-CCCCCCCCCCCCCcceEEEECC-CCcceEEECCCCCEEEEe
Confidence 2456656643 32 112232222 578899999988766654
No 340
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.55 E-value=0.0058 Score=51.07 Aligned_cols=176 Identities=10% Similarity=-0.013 Sum_probs=97.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCe------Eeeeeee--cCceeEEEEcCCCCEEEEecCCCcEEEEECCCCcee------e
Q 010470 322 SRHVVSAAYDRTLKVWDLHKGY------CVNTIIF--HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL------S 387 (510)
Q Consensus 322 ~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~--~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~ 387 (510)
..+|++...| +++.=...++. ....+.. -..+..++|+|+|.+.++ .+|.++-.+..+.... .
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence 4455666656 55554444433 1222222 146889999999997666 6788888776552221 1
Q ss_pred eecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCee----ecCceeEEEcCCCCEEEEEcCCCe
Q 010470 388 EVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRV----ASNWSRSCISPDESYVAAGSADGS 463 (510)
Q Consensus 388 ~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~l~~~~~dg~ 463 (510)
.+....-....++.|.|+|.+.++ .||.|+-++..+.....-+ .....+ -..+..+.+.|+|.+.++. ||.
T Consensus 81 ~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl-~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ 155 (236)
T 1tl2_A 81 KIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWI-ARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQ 155 (236)
T ss_dssp EEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHH-HHSEEEECSSGGGEEEEEECTTSCEEEEE--TTE
T ss_pred EecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCcee-ccccEeccCCCCceEEEEECCCceEEEEe--CCc
Confidence 221111122478999999998887 5588877775431111000 001111 1234568899999988877 777
Q ss_pred EEEEeCCCccee------eccc-ccCcCEEEEEEeCCCCcEEEeeCCCeEE
Q 010470 464 VYIWSISKADIV------RTLK-EHTAPVLSCSWSGLGKPLASADKNGVVC 507 (510)
Q Consensus 464 i~iwd~~~~~~~------~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 507 (510)
++-+...++... ..+. ..-.....+.|.|+|...++. +|.++
T Consensus 156 lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 156 FYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp EEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred EEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence 654443322111 1111 122234557799988765554 77554
No 341
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=97.48 E-value=0.072 Score=50.10 Aligned_cols=260 Identities=10% Similarity=0.076 Sum_probs=126.4
Q ss_pred cceEEEEEec-CCCEEEEeeCCC----eEEEEeCCCCcceeccc------c--------cccceeEEEEecC--CCEEEE
Q 010470 226 GGCASILFEY-NSARLISGGQDK----SIKLWDTNTGSLSSTLY------G--------CLGSVLDLAITHD--NRSVIA 284 (510)
Q Consensus 226 ~~v~~~~~s~-~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~------~--------~~~~v~~~~~~~~--~~~l~~ 284 (510)
..|.+|+++| +...|+.++..| .|...+ +.+..-..+. . ....|.++++.|. ...+++
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 4699999998 334444454444 344332 2232211111 1 1125778889872 456666
Q ss_pred EeCCCeEEEEEcCCCCeeEeecC-------------------CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEe
Q 010470 285 ASSSNNLYVWDVNSGRVRHTLTG-------------------HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV 345 (510)
Q Consensus 285 ~~~d~~i~iwd~~~~~~~~~~~~-------------------~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 345 (510)
++..+.|...+ +.++.-..+.. ....+.+|.+.|.+...++.+..++.|...+- .+..-
T Consensus 134 g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW 211 (394)
T 3b7f_A 134 GTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTDW 211 (394)
T ss_dssp EEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSSC
T ss_pred EecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-CCCCc
Confidence 66666665543 23332222211 12357889898754555555554555554432 22211
Q ss_pred eeeee--------------cCceeEEEEcCC-CCEEEEecCCCcEEEEECCCCceeeeecc-ccc---ccEEEEEEcCC-
Q 010470 346 NTIIF--------------HSNCNALAFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEVAA-HSL---AAVTSISLSRS- 405 (510)
Q Consensus 346 ~~~~~--------------~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~---~~i~~i~~~~~- 405 (510)
..+.. ...+.++.++|. ...+++++..| |+..+ ..++.-..+.. ... ..+.++.++|.
T Consensus 212 ~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~ 289 (394)
T 3b7f_A 212 KPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRD 289 (394)
T ss_dssp EECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSC
T ss_pred eECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC-CCCCcceECCCCCCCCCccceEEEEECCCC
Confidence 11110 123788999885 46677666544 55554 23433333321 111 23567888863
Q ss_pred CCEEEEEec-----------CCcEEEEEcCC-ceeeeEeec--CCCee--ecCceeEEEcCC-CCEEEEEcCCCeEEEEe
Q 010470 406 GNIILTSGR-----------DNLHNLFDIRS-LEVCGSLRA--TGNRV--ASNWSRSCISPD-ESYVAAGSADGSVYIWS 468 (510)
Q Consensus 406 ~~~l~~~~~-----------d~~i~i~d~~~-~~~~~~~~~--~~~~~--~~~~~~~~~s~~-~~~l~~~~~dg~i~iwd 468 (510)
...++++.. ++...+|.... ++....+.. +.... ......++++|. +..|++++.++.|+.-+
T Consensus 290 ~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S~ 369 (394)
T 3b7f_A 290 PRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWASA 369 (394)
T ss_dssp TTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEES
T ss_pred CCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEEC
Confidence 344444432 23344555443 233222221 11000 001124778874 45566776666665433
Q ss_pred CCCcceeecccccCcCEEEEEEe
Q 010470 469 ISKADIVRTLKEHTAPVLSCSWS 491 (510)
Q Consensus 469 ~~~~~~~~~~~~~~~~v~~~~~~ 491 (510)
+.+.....+..+-..+.++.|.
T Consensus 370 -D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 370 -DEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp -STTSBCEEEECSCSCEEEEEEE
T ss_pred -CCCCCceEcccCCCCeeEEEEe
Confidence 4454444444444567777764
No 342
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.47 E-value=0.018 Score=46.26 Aligned_cols=73 Identities=23% Similarity=0.258 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 82 SKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKA----LELVVSENQQIRAQLEEMTMKAKNAEAENKMLVD 154 (510)
Q Consensus 82 ~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~----~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~ 154 (510)
+.+.+...++...+++..+.++..++..++.+++....+ +..|+.+...++.....+...+..++..|+.+..
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr 123 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 123 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 666677777777777777777777777777777766655 5677888888888888888888888777776543
No 343
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.43 E-value=0.0074 Score=56.04 Aligned_cols=219 Identities=12% Similarity=0.076 Sum_probs=105.1
Q ss_pred CCCEEEEEeC-CCeEEEEEcCC--CCee--EeecCCCCceEEEEEecCCCCEEEEEeC-C---------CcEEEEECCCC
Q 010470 278 DNRSVIAASS-SNNLYVWDVNS--GRVR--HTLTGHTDKVCAVDVSKISSRHVVSAAY-D---------RTLKVWDLHKG 342 (510)
Q Consensus 278 ~~~~l~~~~~-d~~i~iwd~~~--~~~~--~~~~~~~~~v~~i~~~~~~~~~l~s~~~-d---------g~i~iwd~~~~ 342 (510)
++..++.|+. ...+.+||+.+ .+-. ..+......-.+++.. ++.+++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 5555566653 34788888864 3221 1122011111222222 5667777765 2 46899999887
Q ss_pred eEeeeeeec-Cc--eeEEEEcCCCCEEEEecCC---------------------------------------CcEEEEEC
Q 010470 343 YCVNTIIFH-SN--CNALAFSMDGQTIFSGHID---------------------------------------GNLRLWDI 380 (510)
Q Consensus 343 ~~~~~~~~~-~~--i~~i~~~~~~~~l~~~~~d---------------------------------------g~i~i~d~ 380 (510)
.....-... .. -.+++. .++.+++.|+.+ ..+.+||+
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 175 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP 175 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred cEEECCCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence 644332222 11 122222 477777888754 47899998
Q ss_pred CCCceeeeecccccccE-EEEEEcCCCCEEEEEec------CCcEEEEEc--CCceeeeEeecCCCeeecCceeEEEcCC
Q 010470 381 QTGKLLSEVAAHSLAAV-TSISLSRSGNIILTSGR------DNLHNLFDI--RSLEVCGSLRATGNRVASNWSRSCISPD 451 (510)
Q Consensus 381 ~~~~~~~~~~~~~~~~i-~~i~~~~~~~~l~~~~~------d~~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 451 (510)
.+.+-...-........ .+++.. ++.+++.|+. ...+.+||+ .+..-.. +.....+. ......+...+
T Consensus 176 ~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~-~~~~~~~~-~~~~~~~~~~~ 252 (357)
T 2uvk_A 176 STQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNK-LAPVSSPD-GVAGGFAGISN 252 (357)
T ss_dssp TTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEE-CCCSSTTT-CCBSCEEEEET
T ss_pred CCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEe-cCCCCCCc-ccccceEEEEC
Confidence 87643322111110111 222222 5666666653 345777876 3332211 11111110 01111234456
Q ss_pred CCEEEEEcCC----------------------CeEEEEeCCCcc--eeecccccCcCEEEEEEeCCCCcEEEeeCCC
Q 010470 452 ESYVAAGSAD----------------------GSVYIWSISKAD--IVRTLKEHTAPVLSCSWSGLGKPLASADKNG 504 (510)
Q Consensus 452 ~~~l~~~~~d----------------------g~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 504 (510)
+.+++.|+.+ ..+.+||+.+.+ .+..+......-.++. .++++++.||.++
T Consensus 253 ~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 253 DSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNSLLIIGGETA 327 (357)
T ss_dssp TEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEE--ETTEEEEEEEECG
T ss_pred CEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEE--eCCEEEEEeeeCC
Confidence 7777777732 257889987643 3333332222222233 3677788888653
No 344
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.36 E-value=0.032 Score=51.73 Aligned_cols=145 Identities=11% Similarity=0.161 Sum_probs=92.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEeeeeeec-----CceeEEEEcCCCCEEEEecCCCcEEEEECCCCc-----------
Q 010470 321 SSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-----SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK----------- 384 (510)
Q Consensus 321 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~----------- 384 (510)
++..++.+- ++.|+.-++..+..-+.+..+ ..+..+..+|+|.+|+..+. ..|.|..+..+.
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccc
Confidence 444444444 467777777644333333333 25788999999999998765 478888887332
Q ss_pred -eeeeeccc-----ccccEEEEEEcCC---CCEEEEEecCCcEEEEEcCCce-eeeEeecCCCeee-----cCceeEEEc
Q 010470 385 -LLSEVAAH-----SLAAVTSISLSRS---GNIILTSGRDNLHNLFDIRSLE-VCGSLRATGNRVA-----SNWSRSCIS 449 (510)
Q Consensus 385 -~~~~~~~~-----~~~~i~~i~~~~~---~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~-----~~~~~~~~s 449 (510)
..+.+... ...+|..+.|+|- +..|++-..|+.|++||+.... ....+........ ..+.+++|.
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEEC
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEc
Confidence 11122221 1367999999995 5689999999999999998521 1112322111111 356678999
Q ss_pred CCCCEEEEEc--CCCeEEEE
Q 010470 450 PDESYVAAGS--ADGSVYIW 467 (510)
Q Consensus 450 ~~~~~l~~~~--~dg~i~iw 467 (510)
++|-.|++.+ .+|.|+-.
T Consensus 189 ~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 189 KDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TTSSCEEEEECTTSCEEEEE
T ss_pred CCCcEEEEEecCCCCCEEEE
Confidence 9887777744 77888754
No 345
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.35 E-value=0.01 Score=49.56 Aligned_cols=176 Identities=9% Similarity=-0.033 Sum_probs=97.2
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCe------eEeecC-CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee--
Q 010470 278 DNRSVIAASSSNNLYVWDVNSGRV------RHTLTG-HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI-- 348 (510)
Q Consensus 278 ~~~~l~~~~~d~~i~iwd~~~~~~------~~~~~~-~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-- 348 (510)
....|++...| +|+.=...++.. ...+-. -=..+..++|+| ++.+.++ .+|.+.-.+..+.....-+
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s 78 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGR 78 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHH
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCccccccc
Confidence 34556666676 666655544431 112211 124677999999 7765555 6788777776542211111
Q ss_pred ---eec---CceeEEEEcCCCCEEEEecCCCcEEEEECCCCcee------eeecccccccEEEEEEcCCCCEEEEEecCC
Q 010470 349 ---IFH---SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL------SEVAAHSLAAVTSISLSRSGNIILTSGRDN 416 (510)
Q Consensus 349 ---~~~---~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~ 416 (510)
... ....++.|.|+|.+.++ .||.|+-++..+...- ..+....-..+..|.+.|+|.+.++. |+
T Consensus 79 ~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg 154 (236)
T 1tl2_A 79 AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQ 154 (236)
T ss_dssp CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TT
T ss_pred ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CC
Confidence 111 12578999999998887 5699988886442211 11222122468999999999988877 66
Q ss_pred cEEEEEcCCceee-----eEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEE
Q 010470 417 LHNLFDIRSLEVC-----GSLRATGNRVASNWSRSCISPDESYVAAGSADGSVY 465 (510)
Q Consensus 417 ~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~ 465 (510)
.++-....+.... ........ ......+.|+++|.+.++. +|.++
T Consensus 155 ~lyr~~~P~~~~~~wl~~~~~~g~~g--~~~yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 155 QFYKALPPVSNQDNWLARATKIGQGG--WDTFKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp EEEEECCCSSTTCCHHHHCEEEESSS--GGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred cEEecCCCCCCCcccccccceeccCC--cceEEEEEECCCCcEEEEe--CCeEE
Confidence 6533222211100 00001000 0122335688888877766 66444
No 346
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.33 E-value=0.083 Score=47.42 Aligned_cols=209 Identities=9% Similarity=0.007 Sum_probs=116.2
Q ss_pred ecCCCEEEEee--CCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCC--------------CeEEEEEcC
Q 010470 234 EYNSARLISGG--QDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS--------------NNLYVWDVN 297 (510)
Q Consensus 234 s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------~~i~iwd~~ 297 (510)
+++|..|+... .++.|...+.+... ...+... .+-.++++|.+|+.+... ..|+..++.
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 35566665553 35666666665333 3333321 234568899988887643 467777777
Q ss_pred CCCeeEeecCCCCceEEEEEecCCCCEEEEEe----CCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecC-C
Q 010470 298 SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAA----YDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI-D 372 (510)
Q Consensus 298 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d 372 (510)
.++... +... . +..|++ .++.|+-.. .+..|...++.... ...+..+. + ..++|+++.|+-.+. .
T Consensus 97 g~~~~~-l~~~--~--~~~~s~-~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~-~--~~~~~~g~~iy~t~~g~ 166 (302)
T 3s25_A 97 GHGSTV-LDPD--P--CIYASL-IGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHY-L--FTCNTSDRYFYYNNPKN 166 (302)
T ss_dssp SCCCEE-EECS--C--EEEEEE-ETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSC-C--CCSEEETTEEEEECTTT
T ss_pred CCcceE-eecC--C--ccEEEE-eCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCC-c--eEeeEECCEEEEEeCCC
Confidence 655332 3211 1 124566 455555544 35567777776433 33333322 2 345778888775544 6
Q ss_pred CcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCC--cEEEEEcCCceeeeEeecCCCeeecCceeEEEcC
Q 010470 373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDN--LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP 450 (510)
Q Consensus 373 g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 450 (510)
..|++.++..+.....+.. ... ..++|++.+|+-...++ .|..-++..... ..+.. ... ..++|
T Consensus 167 ~~Iy~~~l~g~~~~~l~~~----~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt~--~~~------~~~~~ 232 (302)
T 3s25_A 167 GQLYRYDTASQSEALFYDC----NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLTE--ANI------EHYNV 232 (302)
T ss_dssp CCEEEEETTTTEEEEEECS----CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECSC--SCE------EEEEE
T ss_pred ceEEEEECCCCCEEEEeCC----Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEeC--CCc------ceEEE
Confidence 7888888866554333321 222 23569899888766443 566666654432 22211 111 34788
Q ss_pred CCCEEEEEcC--CCeEEEEeCCC
Q 010470 451 DESYVAAGSA--DGSVYIWSISK 471 (510)
Q Consensus 451 ~~~~l~~~~~--dg~i~iwd~~~ 471 (510)
++.+|+.++. .+.|..-++..
T Consensus 233 ~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 233 YGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp ETTEEEEEECSSSCEEEEEETTS
T ss_pred CCCEEEEEECCCCcEEEEEECCC
Confidence 8988876532 35677767654
No 347
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=97.30 E-value=0.026 Score=57.57 Aligned_cols=192 Identities=9% Similarity=0.108 Sum_probs=105.7
Q ss_pred cCCCEEEEeeCC----CeEEEEeCCCCcceecc-c------ccccceeEEEEec-CCCEEEEEeCC------CeEEEEEc
Q 010470 235 YNSARLISGGQD----KSIKLWDTNTGSLSSTL-Y------GCLGSVLDLAITH-DNRSVIAASSS------NNLYVWDV 296 (510)
Q Consensus 235 ~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~-~------~~~~~v~~~~~~~-~~~~l~~~~~d------~~i~iwd~ 296 (510)
.++..++.||.+ ..+.+||..++.....- . .....-.+++..+ ++..++.|+.+ +.+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 567778888754 46888998776532211 1 1111112333343 77777777643 35888998
Q ss_pred CCCCeeEe--ecCCCCceEEEEEecCCCCEEEEEeCCC--cEEEEECCCCeEeeeee---ec---CceeEEEEcCC-CCE
Q 010470 297 NSGRVRHT--LTGHTDKVCAVDVSKISSRHVVSAAYDR--TLKVWDLHKGYCVNTII---FH---SNCNALAFSMD-GQT 365 (510)
Q Consensus 297 ~~~~~~~~--~~~~~~~v~~i~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~---~~---~~i~~i~~~~~-~~~ 365 (510)
.+.+-... +...... .+..... ++.+++.||.++ .+.+||+.++.....-. .+ ....++.+..+ +..
T Consensus 476 ~t~~W~~~~~~p~~R~~-h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i 553 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFR-HSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG 553 (695)
T ss_dssp TTTEEEECCCCSBCCBS-CEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred CCCcEEECCCCCCCccc-ceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence 87543222 1111111 2222323 677888887655 79999998876544322 11 11233555554 667
Q ss_pred EEEecC--C-----CcEEEEECCCCce-----eeeecc---cccccEEEEEEcCCCCEEEEEec--------CCcEEEEE
Q 010470 366 IFSGHI--D-----GNLRLWDIQTGKL-----LSEVAA---HSLAAVTSISLSRSGNIILTSGR--------DNLHNLFD 422 (510)
Q Consensus 366 l~~~~~--d-----g~i~i~d~~~~~~-----~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~--------d~~i~i~d 422 (510)
++.|+. + ..+.+||+.+..- -..+.. ...... ++....++.+++.|+. ...+.+||
T Consensus 554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence 777765 2 3589999987761 111111 111122 2333333677777774 34689999
Q ss_pred cCCceee
Q 010470 423 IRSLEVC 429 (510)
Q Consensus 423 ~~~~~~~ 429 (510)
+.+..-.
T Consensus 633 ~~t~~W~ 639 (695)
T 2zwa_A 633 PLSETLT 639 (695)
T ss_dssp TTTTEEE
T ss_pred CCCCeEE
Confidence 9876543
No 348
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=97.30 E-value=0.042 Score=56.00 Aligned_cols=196 Identities=7% Similarity=0.027 Sum_probs=105.2
Q ss_pred cCCCEEEEEeCC----CeEEEEEcCCCCeeEee-c-----CCC-CceEEEEEecCCCCEEEEEeCC------CcEEEEEC
Q 010470 277 HDNRSVIAASSS----NNLYVWDVNSGRVRHTL-T-----GHT-DKVCAVDVSKISSRHVVSAAYD------RTLKVWDL 339 (510)
Q Consensus 277 ~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~-~-----~~~-~~v~~i~~~~~~~~~l~s~~~d------g~i~iwd~ 339 (510)
.++..++.|+.+ +.+.+||+.+++....- . ... ..-.++...+.++.+++.||.+ ..+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456667777643 46888998877643322 1 011 1112233321145677777754 35889999
Q ss_pred CCCeEeeeeeecC--ceeEEEEcCCCCEEEEecCCC--cEEEEECCCCceeeeec---cc-ccccEEEEEEcCC-CCEEE
Q 010470 340 HKGYCVNTIIFHS--NCNALAFSMDGQTIFSGHIDG--NLRLWDIQTGKLLSEVA---AH-SLAAVTSISLSRS-GNIIL 410 (510)
Q Consensus 340 ~~~~~~~~~~~~~--~i~~i~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~---~~-~~~~i~~i~~~~~-~~~l~ 410 (510)
.+......-..+. .-.+++...++..++.|+.++ .+.+||+.+..-...-. .. ......++.+..+ +.+++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 8875443322221 123344434788888887654 69999998765322211 01 1122333555555 66777
Q ss_pred EEecC-------CcEEEEEcCCcee-----eeEeecCCCeeecCceeEEEcCCCCEEEEEcCC--------CeEEEEeCC
Q 010470 411 TSGRD-------NLHNLFDIRSLEV-----CGSLRATGNRVASNWSRSCISPDESYVAAGSAD--------GSVYIWSIS 470 (510)
Q Consensus 411 ~~~~d-------~~i~i~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d--------g~i~iwd~~ 470 (510)
.|+.+ +.+.+||+.+... ...+.... ........++...++.+++.|+.+ ..|.+||+.
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p-~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHP-LFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECG-GGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCC-CCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 77652 4588999987661 11221110 011111113333337777777743 459999988
Q ss_pred Ccc
Q 010470 471 KAD 473 (510)
Q Consensus 471 ~~~ 473 (510)
+.+
T Consensus 635 t~~ 637 (695)
T 2zwa_A 635 SET 637 (695)
T ss_dssp TTE
T ss_pred CCe
Confidence 764
No 349
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.19 E-value=0.039 Score=51.18 Aligned_cols=142 Identities=15% Similarity=0.202 Sum_probs=94.0
Q ss_pred ecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCC----CCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe--------
Q 010470 276 THDNRSVIAASSSNNLYVWDVNSGRVRHTLTGH----TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY-------- 343 (510)
Q Consensus 276 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------- 343 (510)
..+|..++++-. +.||.-++..+...+.+... -..|..+..+| ++.+++..+ +..|.|..+..+.
T Consensus 29 ~~n~t~i~~a~~-n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 29 SQNGTRIVFIQD-NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp ETTTTEEEEEET-TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHH
T ss_pred EcCCCEEEEEEC-CEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCccccc
Confidence 445555555543 57777777654444444332 23577899999 888888877 6689999887332
Q ss_pred ----Eeeeeee-------cCceeEEEEcC---CCCEEEEecCCCcEEEEECCCCc--eeeeeccc--------ccccEEE
Q 010470 344 ----CVNTIIF-------HSNCNALAFSM---DGQTIFSGHIDGNLRLWDIQTGK--LLSEVAAH--------SLAAVTS 399 (510)
Q Consensus 344 ----~~~~~~~-------~~~i~~i~~~~---~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~--------~~~~i~~ 399 (510)
..+.+.. ..+|..+.|+| .+..|++-..|+.|++||+.... +. .+... ....|.+
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEE
Confidence 1122222 34599999999 46689999999999999997521 22 22111 1146889
Q ss_pred EEEcCCCCEEEEEe--cCCcEEEE
Q 010470 400 ISLSRSGNIILTSG--RDNLHNLF 421 (510)
Q Consensus 400 i~~~~~~~~l~~~~--~d~~i~i~ 421 (510)
++|.+++-.|++.+ .+|.|+-.
T Consensus 185 ~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 185 LEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEcCCCcEEEEEecCCCCCEEEE
Confidence 99999888777755 77877653
No 350
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.12 E-value=0.073 Score=42.83 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 93 ITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNA 145 (510)
Q Consensus 93 i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~ 145 (510)
+..|+.++..++..+..+...+-.+...+..+....-.....+..++.++..+
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~a 142 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQA 142 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33444444444444444444444444444433333333333444444444333
No 351
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.10 E-value=0.22 Score=47.89 Aligned_cols=216 Identities=13% Similarity=0.122 Sum_probs=126.5
Q ss_pred cCCCEEEEeeC-CCeEEEEeCCCCcceeccc-ccccceeEEEEe--cCCCEEEEEeC-------CCeE---------EEE
Q 010470 235 YNSARLISGGQ-DKSIKLWDTNTGSLSSTLY-GCLGSVLDLAIT--HDNRSVIAASS-------SNNL---------YVW 294 (510)
Q Consensus 235 ~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~~~~-------d~~i---------~iw 294 (510)
.||++|+.-.. +..|-..++...++-..+. .....+.+++|- |+..|+++++. ||.. .+|
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f 219 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMY 219 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEE
Confidence 36778877664 6678888888776644433 345677888885 78888888764 2221 111
Q ss_pred ---EcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCC--------------------------------------C-
Q 010470 295 ---DVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD--------------------------------------R- 332 (510)
Q Consensus 295 ---d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d--------------------------------------g- 332 (510)
|..+.+....+.- .+....+...+ ++.+.++.+.+ +
T Consensus 220 ~~iD~~tm~v~~Qv~v-~gnld~~~~~~-~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 220 NAIDAETMEMAFQVIV-DGNLDNTDADY-TGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEETTTCSEEEEEEE-SSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEcCCccEEEEEEEc-CCChhhcCCCC-CCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 2222222111110 01111122223 33444443321 1
Q ss_pred -cEEEEECCC----C-eEeeeeeecCceeEEEEcCCCCEEEEec-CCCcEEEEECCCC------ce-------eeeeccc
Q 010470 333 -TLKVWDLHK----G-YCVNTIIFHSNCNALAFSMDGQTIFSGH-IDGNLRLWDIQTG------KL-------LSEVAAH 392 (510)
Q Consensus 333 -~i~iwd~~~----~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~------~~-------~~~~~~~ 392 (510)
.|.+.|.+. + ..+..+..+..+..+.++|||+++++++ .+.++.++|+... +. ......
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~- 376 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL- 376 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-
Confidence 345555544 2 2334445556688999999999988654 6789999998742 11 222222
Q ss_pred ccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCc----------eeeeEeecCCCeeecCceeEEE------cCCCCEEE
Q 010470 393 SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL----------EVCGSLRATGNRVASNWSRSCI------SPDESYVA 456 (510)
Q Consensus 393 ~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~------s~~~~~l~ 456 (510)
.......+|+++|+...+..-|..|.-|++... ..+..+..+..+.. +.. .|+|++|+
T Consensus 377 -GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH-----~~~~~get~~~dGk~lv 450 (638)
T 3sbq_A 377 -GLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGH-----LHASLCETNEADGKWLV 450 (638)
T ss_dssp -CSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEE-----EEETTTTSTTCCSCEEE
T ss_pred -CCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcc-----cccCCCccCCCCccEEE
Confidence 256778999999966666678999999999753 45556655554433 222 57888888
Q ss_pred EEc
Q 010470 457 AGS 459 (510)
Q Consensus 457 ~~~ 459 (510)
+.+
T Consensus 451 ~ln 453 (638)
T 3sbq_A 451 ALS 453 (638)
T ss_dssp EEE
T ss_pred Eec
Confidence 865
No 352
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.0073 Score=46.01 Aligned_cols=21 Identities=14% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhhcccchhhHh
Q 010470 14 ALKALRKRHLVEEGAHAPAIIA 35 (510)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~ 35 (510)
-++.|+.|+.+| +.|.+++..
T Consensus 30 l~~rL~~Rd~~E-~~~~~l~~e 50 (152)
T 3a7p_A 30 LIRRLTDRNDKE-AHLNELFQD 50 (152)
T ss_dssp ----------------------
T ss_pred HHHHHHHhhhHH-HHHHHHHHh
Confidence 577888888874 344444433
No 353
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.91 E-value=0.046 Score=58.59 Aligned_cols=233 Identities=10% Similarity=0.139 Sum_probs=130.2
Q ss_pred EEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC-CCeeEeecCC--
Q 010470 232 LFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS-GRVRHTLTGH-- 308 (510)
Q Consensus 232 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~-- 308 (510)
-.+|..+.+|.-. ..++.|||+++...+.++.- ..+|..-.|-.+.. |+..+ +..|+-|++.. ..+...+.-|
T Consensus 72 IMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~ 147 (1630)
T 1xi4_A 72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSS 147 (1630)
T ss_pred ccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCCe-eEEEc-CCeEEEeccCCCCccHHHHhcchh
Confidence 4467666666554 67899999998877776654 34566667764444 33332 35799999964 2354444444
Q ss_pred --CCceEEEEEecCCCCEEEEEe-------CCCcEEEEECCCCeEeeeeeecCc-eeEEEEc--CC-CCEEEEec---CC
Q 010470 309 --TDKVCAVDVSKISSRHVVSAA-------YDRTLKVWDLHKGYCVNTIIFHSN-CNALAFS--MD-GQTIFSGH---ID 372 (510)
Q Consensus 309 --~~~v~~i~~~~~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~-i~~i~~~--~~-~~~l~~~~---~d 372 (510)
...|..-..++ +...++..| -.|.+.+|....+. .+.+.+|.. ...+.+. +. ...++.+. ..
T Consensus 148 L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g 225 (1630)
T 1xi4_A 148 LAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (1630)
T ss_pred cccCeeEEeeeCC-CCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence 35566666776 555544332 35788888876443 222222211 1111111 11 11222221 13
Q ss_pred CcEEEEECCCC---ceee------eeccc--ccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeec
Q 010470 373 GNLRLWDIQTG---KLLS------EVAAH--SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVAS 441 (510)
Q Consensus 373 g~i~i~d~~~~---~~~~------~~~~~--~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 441 (510)
|.++|.++... .+.. .+..+ ...-+.++..++....++.-+.-|.+++||+.++..+..-+.....+..
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~ 305 (1630)
T 1xi4_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV 305 (1630)
T ss_pred ceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEE
Confidence 68888887442 1111 11111 1245667888888889999999999999999998876655544443322
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEeCCCcce
Q 010470 442 NWSRSCISPDESYVAAGSADGSVYIWSISKADI 474 (510)
Q Consensus 442 ~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 474 (510)
.+.+....-+++....|.|.-..++....
T Consensus 306 ----~~~~~~~~g~~~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 306 ----TAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred ----eccCCCCCceEEEcCCceEEEEEEccchh
Confidence 22222222233334566666555554443
No 354
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.90 E-value=0.18 Score=43.78 Aligned_cols=51 Identities=16% Similarity=0.222 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 96 LQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAE 146 (510)
Q Consensus 96 l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~ 146 (510)
+..+++.+..++..++.++.+++..++.++.+.+.+...+..++..+....
T Consensus 95 L~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~ 145 (256)
T 3na7_A 95 LNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELE 145 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444333
No 355
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.86 E-value=0.24 Score=44.43 Aligned_cols=176 Identities=10% Similarity=0.076 Sum_probs=100.9
Q ss_pred EEEEecCCCEEEEeeCC--------------CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe----CCCeE
Q 010470 230 SILFEYNSARLISGGQD--------------KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS----SSNNL 291 (510)
Q Consensus 230 ~~~~s~~~~~l~s~~~d--------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~d~~i 291 (510)
+--++++|.+|+-+... ..|+..+++.+.... +... .+..|+++++.|+... .+..|
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~I 131 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD----PCIYASLIGNYIYYLHYDTQTATSL 131 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS----CEEEEEEETTEEEEEEESSSSCEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC----CccEEEEeCCEEEEEeecCCCCceE
Confidence 34567889888766543 367777777654322 2211 2236788999888776 33456
Q ss_pred EEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEE-EEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEec
Q 010470 292 YVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVV-SAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGH 370 (510)
Q Consensus 292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 370 (510)
+..++... ....+..+.. ..++| .+..|+ +......|.+.++..+.....+. .... ..+.|++.+|+-..
T Consensus 132 y~~~~dGs-~~~~lt~~~~----~~~~~-~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~ 202 (302)
T 3s25_A 132 YRIRIDGE-EKKKIKNHYL----FTCNT-SDRYFYYNNPKNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMD 202 (302)
T ss_dssp EEEETTSC-CCEEEESSCC----CCSEE-ETTEEEEECTTTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEE
T ss_pred EEEECCCC-CeEEEeCCCc----eEeeE-ECCEEEEEeCCCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEE
Confidence 66666533 3344443332 34556 444455 44446789999987665443322 2222 34568888887554
Q ss_pred CC--CcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEec--CCcEEEEEcCC
Q 010470 371 ID--GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR--DNLHNLFDIRS 425 (510)
Q Consensus 371 ~d--g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--d~~i~i~d~~~ 425 (510)
.. ..|..-++.... ...+.. ..+ ..|+|++..|+.+.. .+.|...++..
T Consensus 203 ~~~~~~I~~~~ldG~~-~~~Lt~---~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 203 VNRDNAIVHVNINNPN-PVVLTE---ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp GGGTTEEEEECSSSCC-CEECSC---SCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred cCCCcEEEEEECCCCC-eEEEeC---CCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence 33 357777765443 333332 223 337888888876533 35666666654
No 356
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.83 E-value=0.11 Score=55.10 Aligned_cols=36 Identities=11% Similarity=0.224 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 96 LQEELTQIRDECSQLKTELEEKIKALELVVSENQQI 131 (510)
Q Consensus 96 l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l 131 (510)
+++++..+++++.+++++++++.++++.++...+++
T Consensus 982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~ 1017 (1080)
T 2dfs_A 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKY 1017 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443333
No 357
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=96.80 E-value=0.08 Score=38.16 Aligned_cols=27 Identities=11% Similarity=0.131 Sum_probs=13.5
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 010470 46 EWKEKADNLETELQQCYKAQSRLSEQL 72 (510)
Q Consensus 46 ~~~~~~~~l~~el~~~~k~~~~~~~~l 72 (510)
....++..|+.+...+......+..++
T Consensus 6 aIKkKm~~lk~e~e~a~drae~~e~~~ 32 (101)
T 3u1c_A 6 AIKKKMQMLKLDKENALDRAEQAEADK 32 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555655555544444443333
No 358
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.80 E-value=0.22 Score=43.26 Aligned_cols=16 Identities=13% Similarity=-0.037 Sum_probs=8.6
Q ss_pred EEEEeeCCCeEEEEeC
Q 010470 239 RLISGGQDKSIKLWDT 254 (510)
Q Consensus 239 ~l~s~~~dg~i~iwd~ 254 (510)
-++.|-.-|.|-+|.-
T Consensus 221 ~Iv~Cp~CgRIL~~~~ 236 (256)
T 3na7_A 221 DMITCPYCGRILYAEG 236 (256)
T ss_dssp SCEECTTTCCEEECSC
T ss_pred CEEECCCCCeeEEeCc
Confidence 3445555566666643
No 359
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.74 E-value=0.14 Score=40.05 Aligned_cols=12 Identities=25% Similarity=0.518 Sum_probs=3.6
Q ss_pred HHHHHHHHHHHH
Q 010470 50 KADNLETELQQC 61 (510)
Q Consensus 50 ~~~~l~~el~~~ 61 (510)
++..|+..|.++
T Consensus 7 Ki~~LekQL~E~ 18 (168)
T 3o0z_A 7 KLSQLQKQLEEA 18 (168)
T ss_dssp ---CTHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 360
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=96.64 E-value=0.1 Score=37.25 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHH
Q 010470 51 ADNLETELQQCYKAQSRLSEQLVV 74 (510)
Q Consensus 51 ~~~l~~el~~~~k~~~~~~~~l~~ 74 (510)
...|+.+|++++....+...+...
T Consensus 27 T~lLq~qLTqAQe~l~~~eaQAaT 50 (121)
T 3mq7_A 27 THLLQQELTEAQKGFQDVEAQAAT 50 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555444444433333
No 361
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.56 E-value=0.088 Score=35.42 Aligned_cols=61 Identities=21% Similarity=0.278 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 82 SKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKA 142 (510)
Q Consensus 82 ~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~ 142 (510)
+...+++.-..|..++.+++.++++...|..+.+++....+.+..|..+++.+...-+.++
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555566666666666655555555555444444445544444444433333
No 362
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=96.55 E-value=0.52 Score=44.14 Aligned_cols=179 Identities=8% Similarity=0.022 Sum_probs=89.1
Q ss_pred CEEEEeeCCCeEEEEeCCC-Ccceecc--cccccceeEEEEec-CCCEEEEEeCCC----eEEEEEcCCCCeeEeecC--
Q 010470 238 ARLISGGQDKSIKLWDTNT-GSLSSTL--YGCLGSVLDLAITH-DNRSVIAASSSN----NLYVWDVNSGRVRHTLTG-- 307 (510)
Q Consensus 238 ~~l~s~~~dg~i~iwd~~~-~~~~~~~--~~~~~~v~~~~~~~-~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~-- 307 (510)
..|+.|+..| +.+++... +..-..+ ......|.+|++.| +...+++++..| .|...+ +.++.-..+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPP 100 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccc
Confidence 3677777666 55554432 2221111 12245789999998 333455555444 444332 33332222110
Q ss_pred ------------CCCceEEEEEecCC-CCEEEEEeCCCcEEEEECCCCeEeeeee--------------------ecCce
Q 010470 308 ------------HTDKVCAVDVSKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTII--------------------FHSNC 354 (510)
Q Consensus 308 ------------~~~~v~~i~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------------------~~~~i 354 (510)
....|.++.+.|.+ ...++.++..+.|...+-. +..-..+. ....+
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCCce
Confidence 11257788888744 5667766666666655432 22111111 11236
Q ss_pred eEEEEcCC-CCEEEEecCCCcEEEEECCCCceeeeeccc-c-----------cccEEEEEEcCC-CCEEEEEecCCcEEE
Q 010470 355 NALAFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEVAAH-S-----------LAAVTSISLSRS-GNIILTSGRDNLHNL 420 (510)
Q Consensus 355 ~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~-----------~~~i~~i~~~~~-~~~l~~~~~d~~i~i 420 (510)
.++.++|. ...++++..++.|...+ ..++.-..+... . ...+.++.++|. ...|+++...+ |..
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~ 257 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYR 257 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEE
T ss_pred eEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEE
Confidence 78999873 44555555445455443 233322222110 0 124889999986 45666666544 444
Q ss_pred E
Q 010470 421 F 421 (510)
Q Consensus 421 ~ 421 (510)
.
T Consensus 258 s 258 (394)
T 3b7f_A 258 M 258 (394)
T ss_dssp E
T ss_pred e
Confidence 3
No 363
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=96.50 E-value=0.41 Score=42.42 Aligned_cols=218 Identities=15% Similarity=0.095 Sum_probs=106.2
Q ss_pred cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEee-
Q 010470 268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN- 346 (510)
Q Consensus 268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~- 346 (510)
..|..++.... ..+.-. ||.|+.|-....-.+..-......|..++... ...++. . ||.|+.|-....-.+.
T Consensus 24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~ 96 (282)
T 3qhy_B 24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTV 96 (282)
T ss_dssp SSCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCC
T ss_pred CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCC
Confidence 35677766433 333335 89999997654221111111234566676643 333444 5 8999999765321111
Q ss_pred eeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCc
Q 010470 347 TIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL 426 (510)
Q Consensus 347 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~ 426 (510)
.......|..++... .+.+.-+ +|.|+.|-....-.+- +.......|..++...+. .++-. ||.++.|-....
T Consensus 97 P~~~~~~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~ 169 (282)
T 3qhy_B 97 PAEARSGVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYF 169 (282)
T ss_dssp CGGGSSSEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTT
T ss_pred CcccCCCeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCC-CCccCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCC
Confidence 011123566666643 3333344 8999999764422111 111112457666654432 22233 788888876542
Q ss_pred eeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeE
Q 010470 427 EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVV 506 (510)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i 506 (510)
..+.. .......+..++. .....++- .||.|+.|-......+..-......|..++-... ..+.-. ||.|
T Consensus 170 gqlg~----p~~~~~~v~~i~~--G~~hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~--h~~al~-~g~v 239 (282)
T 3qhy_B 170 GQTTV----PAEAQSGVDDVAG--GIFHSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEW--YSLALK-NGKV 239 (282)
T ss_dssp STTSC----CGGGGSSEEEEEE--CSSEEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSS--CEEEEE-TTEE
T ss_pred CCCCC----ceecCCCeEEEEe--cCCEEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCC--EEEEEE-CCEE
Confidence 21110 0111122323333 23333333 5899999975543222111111234666665433 223333 8888
Q ss_pred EEc
Q 010470 507 CVW 509 (510)
Q Consensus 507 ~iw 509 (510)
+.|
T Consensus 240 ~~w 242 (282)
T 3qhy_B 240 IAW 242 (282)
T ss_dssp EEE
T ss_pred EEe
Confidence 887
No 364
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.50 E-value=0.12 Score=54.82 Aligned_cols=31 Identities=32% Similarity=0.335 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 91 SLITSLQEELTQIRDECSQLKTELEEKIKAL 121 (510)
Q Consensus 91 ~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~ 121 (510)
..+.+++++++.+++++..+.++.+.+.+.+
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~ 1014 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWA 1014 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443333
No 365
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=96.49 E-value=0.14 Score=36.97 Aligned_cols=30 Identities=10% Similarity=0.075 Sum_probs=15.0
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 010470 46 EWKEKADNLETELQQCYKAQSRLSEQLVVE 75 (510)
Q Consensus 46 ~~~~~~~~l~~el~~~~k~~~~~~~~l~~~ 75 (510)
....++..|+.+...+......+..++...
T Consensus 6 ~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~ 35 (101)
T 3u59_A 6 AIKKKMQMLKLDKENAIDRAEQAEADKKQA 35 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555655555544444444444333
No 366
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.48 E-value=0.1 Score=61.17 Aligned_cols=24 Identities=13% Similarity=-0.024 Sum_probs=15.8
Q ss_pred HHHhhhhhhhcccchhhHhhcCcc
Q 010470 17 ALRKRHLVEEGAHAPAIIALSRPI 40 (510)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~ 40 (510)
.+||++-+....|-+.+..|...+
T Consensus 1885 ~~~R~~yvTP~syLeli~~y~~ll 1908 (3245)
T 3vkg_A 1885 RQGRQNYVTPRHYLDFINQVVLLI 1908 (3245)
T ss_dssp SSSCCCCCCHHHHHHHHHHHHHHH
T ss_pred HhCCcccCCHHHHHHHHHHHHHHH
Confidence 345555566777777777777666
No 367
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=96.27 E-value=0.089 Score=40.32 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 86 LQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMT 139 (510)
Q Consensus 86 ~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~ 139 (510)
...++..+.++.+++..++.++..+..+++++.++++.++.+...++.++..++
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444444444333
No 368
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=96.25 E-value=0.22 Score=38.12 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 90 ESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEA 147 (510)
Q Consensus 90 ~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~ 147 (510)
......+.++++++..++..|..++..+...++.++.+...++.++..++.+...++.
T Consensus 74 ~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 74 KKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666677777777777666666666666666666666666666655543
No 369
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=96.12 E-value=0.23 Score=35.73 Aligned_cols=48 Identities=13% Similarity=0.174 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 96 LQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAK 143 (510)
Q Consensus 96 l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~ 143 (510)
++..+...+.+..++..++..+.+.+..+..+++.+...+......++
T Consensus 28 ~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLe 75 (101)
T 3u1c_A 28 AEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLL 75 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555555555555555555555544444444433
No 370
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=95.88 E-value=1.3 Score=42.32 Aligned_cols=232 Identities=13% Similarity=0.051 Sum_probs=115.1
Q ss_pred cceEEEEEecCCC-EEEEeeCCCeEEEEeCCCCc---ceeccc---------ccccceeEEEEecC---CCEEEEE-eC-
Q 010470 226 GGCASILFEYNSA-RLISGGQDKSIKLWDTNTGS---LSSTLY---------GCLGSVLDLAITHD---NRSVIAA-SS- 287 (510)
Q Consensus 226 ~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~---~~~~~~---------~~~~~v~~~~~~~~---~~~l~~~-~~- 287 (510)
.....|+|.|+|. .|+++...|.|++++..... .+..+. ........|+|+|+ +.+|++. +.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3567899999996 56666778999999754321 111111 11457789999996 3334333 21
Q ss_pred -C----------CeEEEEEcCCC----------CeeEeec--CCCCceEEEEEecCCCCEEEEEeCC-------------
Q 010470 288 -S----------NNLYVWDVNSG----------RVRHTLT--GHTDKVCAVDVSKISSRHVVSAAYD------------- 331 (510)
Q Consensus 288 -d----------~~i~iwd~~~~----------~~~~~~~--~~~~~v~~i~~~~~~~~~l~s~~~d------------- 331 (510)
+ ..|.-|.+..+ +.+..+. ........|.|.| ++.+.++.+..
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp-DG~LYv~~Gd~~~~~~~~~~~q~~ 172 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP-DGFLYIILGDGMITLDDMEEMDGL 172 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT-TSCEEEEECCTTCCHHHHHHCTTC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC-CCcEEEEeCCCCCCCCccccccCc
Confidence 1 14555665421 1222222 2223467899999 67766665543
Q ss_pred ----CcEEEEECCCC------eE-------------eeee-eecCceeEEEEcCC-----CC-EEEEecCCC----cEEE
Q 010470 332 ----RTLKVWDLHKG------YC-------------VNTI-IFHSNCNALAFSMD-----GQ-TIFSGHIDG----NLRL 377 (510)
Q Consensus 332 ----g~i~iwd~~~~------~~-------------~~~~-~~~~~i~~i~~~~~-----~~-~l~~~~~dg----~i~i 377 (510)
|.|.-.|.... .. ...+ ..+.++..++|+|. |. +++.+...| .-.|
T Consensus 173 ~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei 252 (463)
T 2wg3_C 173 SDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARI 252 (463)
T ss_dssp CSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC------CEEE
T ss_pred CCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEecccCCCCCCCCeE
Confidence 23444454431 00 0111 23345788999986 33 444443212 1233
Q ss_pred EECCCC------ceeeeecccccccEEEEEEcCC-------CCEEEEEecCCcEEEEEcCCcee---eeEe-ecC----C
Q 010470 378 WDIQTG------KLLSEVAAHSLAAVTSISLSRS-------GNIILTSGRDNLHNLFDIRSLEV---CGSL-RAT----G 436 (510)
Q Consensus 378 ~d~~~~------~~~~~~~~~~~~~i~~i~~~~~-------~~~l~~~~~d~~i~i~d~~~~~~---~~~~-~~~----~ 436 (510)
..+..+ .++..+..+....+..+.|-.. |.+|+. ...+.|....+..... ...+ ... .
T Consensus 253 ~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~-~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 331 (463)
T 2wg3_C 253 LQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFG-DRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCR 331 (463)
T ss_dssp EEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEE-ETTSCEEEEEC-----CCEEEEECEEETTSSC
T ss_pred eeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEe-cCCCcEEEEEeCCCCceeeEEEeecCCccccc
Confidence 333322 2333443322246777777532 344544 4446666665543211 1111 110 0
Q ss_pred CeeecCceeEEEcCCCCEEEEEc
Q 010470 437 NRVASNWSRSCISPDESYVAAGS 459 (510)
Q Consensus 437 ~~~~~~~~~~~~s~~~~~l~~~~ 459 (510)
......+..+.+.|||.++++..
T Consensus 332 ~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 332 GYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp SCCCSEEEEEEECTTCCEEEEEE
T ss_pred ccccCcceEEEECCCCCEEEEec
Confidence 11122345688999998877765
No 371
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=95.85 E-value=0.89 Score=40.20 Aligned_cols=239 Identities=14% Similarity=0.086 Sum_probs=120.4
Q ss_pred ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeec
Q 010470 227 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLT 306 (510)
Q Consensus 227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 306 (510)
.|..++.... ..++. . ||.|..|-.+..-.+.........|..++...+.. ++. . ||.|+.|-....-.+-.-.
T Consensus 25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 4666655432 22333 4 89999997654322221112234667777653332 333 4 8999999765422111111
Q ss_pred CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC-eEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCce
Q 010470 307 GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG-YCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL 385 (510)
Q Consensus 307 ~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 385 (510)
.-...|..++... .+.+.-. +|.|+.|-.... +.-........+..++...+ +.+.-. ||.|+.|-......
T Consensus 99 ~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gq 171 (282)
T 3qhy_B 99 EARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQ 171 (282)
T ss_dssp GGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTST
T ss_pred ccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCC
Confidence 1234677777643 4444445 999999976542 21111112244666665432 223233 68999997643221
Q ss_pred eeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEE
Q 010470 386 LSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVY 465 (510)
Q Consensus 386 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~ 465 (510)
+. +.......|..|+...+.. ++. .+|.++.|-......+. ........+..++...... ++ -. ||.|+
T Consensus 172 lg-~p~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg----~p~~~~~~v~~i~~G~~h~-~a-l~-~g~v~ 240 (282)
T 3qhy_B 172 TT-VPAEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTT----VPTEALSGVSAIASGEWYS-LA-LK-NGKVI 240 (282)
T ss_dssp TS-CCGGGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTC----CCGGGGSSCCEEEECSSCE-EE-EE-TTEEE
T ss_pred CC-CceecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCC----CCcccCCCceEEEcCCCEE-EE-EE-CCEEE
Confidence 11 1111124577776654322 233 58999999765422111 0111112333344333322 23 33 89999
Q ss_pred EEeCCCcceeecccccCcCEEEEEEeCC
Q 010470 466 IWSISKADIVRTLKEHTAPVLSCSWSGL 493 (510)
Q Consensus 466 iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 493 (510)
.|-.....++.. ...|.+++-.+.
T Consensus 241 ~wG~n~~gq~~v----~~~v~~iaaG~~ 264 (282)
T 3qhy_B 241 AWGSSRTAPSSV----QSGVSSIEAGPN 264 (282)
T ss_dssp EESTTCCCCGGG----SSCEEEEEECSS
T ss_pred EecCCCCccccC----CCCcEEEEECcC
Confidence 997665444433 235777776554
No 372
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=95.84 E-value=0.33 Score=35.15 Aligned_cols=69 Identities=19% Similarity=0.218 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 86 LQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKMLVD 154 (510)
Q Consensus 86 ~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~ 154 (510)
..+....+..|+.++.+++.....+...+..+.+.+..|....-..-..++.++.++..+-+.+.++..
T Consensus 30 ~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~ 98 (111)
T 2v66_B 30 YAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLES 98 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 334455666777777777777777777777777777766666666666677777777666555555443
No 373
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=95.74 E-value=0.26 Score=33.81 Aligned_cols=34 Identities=26% Similarity=0.211 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 109 QLKTELEEKIKALELVVSENQQIRAQLEEMTMKA 142 (510)
Q Consensus 109 ~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~ 142 (510)
++..++..+.+.+..+..+++.+...+...+.++
T Consensus 38 ~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kL 71 (81)
T 1ic2_A 38 QLEDELVALQKKLKGTEDELDKYSESLKDAQEKL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444433
No 374
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.71 E-value=0.055 Score=58.50 Aligned_cols=27 Identities=11% Similarity=0.081 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 010470 47 WKEKADNLETELQQCYKAQSRLSEQLV 73 (510)
Q Consensus 47 ~~~~~~~l~~el~~~~k~~~~~~~~l~ 73 (510)
+++++..++..+........++..++.
T Consensus 862 L~~eL~el~~~L~~le~~l~ele~~l~ 888 (1184)
T 1i84_S 862 KDEELQRTKERQQKAEAELKELEQKHT 888 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433333
No 375
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.70 E-value=0.55 Score=36.75 Aligned_cols=12 Identities=25% Similarity=0.127 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 010470 89 KESLITSLQEEL 100 (510)
Q Consensus 89 ~~~~i~~l~~~l 100 (510)
+++.+..++..+
T Consensus 67 Leke~~~LQa~L 78 (168)
T 3o0z_A 67 TDKDYYQLQAIL 78 (168)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 376
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=95.69 E-value=0.39 Score=34.98 Aligned_cols=21 Identities=14% Similarity=0.270 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 010470 48 KEKADNLETELQQCYKAQSRL 68 (510)
Q Consensus 48 ~~~~~~l~~el~~~~k~~~~~ 68 (510)
...+..|++|+..+++.....
T Consensus 59 QKEi~~Lrae~~~~QRn~~K~ 79 (167)
T 4gkw_A 59 QKEIGKLRAELGTAQRNLEKA 79 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHH
Confidence 344455555555444444444
No 377
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=95.63 E-value=0.29 Score=34.45 Aligned_cols=61 Identities=15% Similarity=0.165 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 82 SKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKA 142 (510)
Q Consensus 82 ~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~ 142 (510)
+.+..+...-++..|+..++.+++...++..++.+..++.+.++...+.++.++..+...+
T Consensus 21 LDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 21 LDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555566666666666666677777777766666666666666666655544
No 378
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=95.59 E-value=0.38 Score=34.14 Aligned_cols=88 Identities=17% Similarity=0.175 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 51 ADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQ 130 (510)
Q Consensus 51 ~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~ 130 (510)
+..++.+|..+......+-+.|.. +.+....+...|..++.+..++..+-.+.-.++.....+...+.++++.
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~-------lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~S 78 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELED-------VEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKS 78 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666655555555444433 2233333344444444444444444444445555555555556666666
Q ss_pred HHHHHHHHHHHHHHH
Q 010470 131 IRAQLEEMTMKAKNA 145 (510)
Q Consensus 131 l~~~~~~~~~~~~~~ 145 (510)
+..++......+..+
T Consensus 79 l~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 79 VENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 666665555555444
No 379
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=95.58 E-value=0.67 Score=41.33 Aligned_cols=94 Identities=11% Similarity=0.178 Sum_probs=46.4
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 46 EWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVV 125 (510)
Q Consensus 46 ~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~ 125 (510)
.+..++..|...|.+..+.-.+..+-.....+..+.-.+..+..+.. +.+..++|+.++..|+..++.....+..|+
T Consensus 64 ~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~---~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq 140 (390)
T 1deq_A 64 DFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNT---FKQINEDLRSRIEILRRKVIEQVQRINLLQ 140 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44555555555555554444444333333333222222222222222 222234555556666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010470 126 SENQQIRAQLEEMTMKA 142 (510)
Q Consensus 126 ~e~~~l~~~~~~~~~~~ 142 (510)
.-++.++.++..|+...
T Consensus 141 ~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 141 KNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666666555
No 380
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.41 E-value=1 Score=53.13 Aligned_cols=27 Identities=11% Similarity=0.101 Sum_probs=12.0
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 010470 46 EWKEKADNLETELQQCYKAQSRLSEQL 72 (510)
Q Consensus 46 ~~~~~~~~l~~el~~~~k~~~~~~~~l 72 (510)
.++.++..++.+|.+..+...++-+++
T Consensus 1938 ~l~~~L~~~~~~L~~k~~ea~~~l~~i 1964 (3245)
T 3vkg_A 1938 DLQVSLAQKNRELDVKNEQANQKLKQM 1964 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555544443333333333
No 381
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=95.40 E-value=2.7 Score=42.64 Aligned_cols=237 Identities=11% Similarity=0.088 Sum_probs=122.2
Q ss_pred eEEEE-EecCCCEEEEeeC-----CCeEEEEeCCCCcceec-cccc-cc------ceeEEEEecCCCEEEEEe-------
Q 010470 228 CASIL-FEYNSARLISGGQ-----DKSIKLWDTNTGSLSST-LYGC-LG------SVLDLAITHDNRSVIAAS------- 286 (510)
Q Consensus 228 v~~~~-~s~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~-~~~~-~~------~v~~~~~~~~~~~l~~~~------- 286 (510)
...+. ++|++++++.+-+ -..|+++|+.+++.+.. +... .+ ....++|..++..+++..
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEIT 210 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBC
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcC
Confidence 44555 8899998765422 23699999999987642 2200 00 113458874444444321
Q ss_pred ---CCCeEEEEEcCCCC--eeEeecCCCCce-EEEEEecCCCC----EEEEEeC---CCcEEEEECCC--CeEeeeeeec
Q 010470 287 ---SSNNLYVWDVNSGR--VRHTLTGHTDKV-CAVDVSKISSR----HVVSAAY---DRTLKVWDLHK--GYCVNTIIFH 351 (510)
Q Consensus 287 ---~d~~i~iwd~~~~~--~~~~~~~~~~~v-~~i~~~~~~~~----~l~s~~~---dg~i~iwd~~~--~~~~~~~~~~ 351 (510)
....|+.|.+-+.. -...+.+....+ .+...+++... .+++.+. ...+.+.|... +.. ..+..+
T Consensus 211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~ 289 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINMP 289 (711)
T ss_dssp TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCSC
T ss_pred cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeecC
Confidence 12468888876543 223344333333 33444553332 3444432 24566767653 332 233333
Q ss_pred CceeEEEEcCCCCEEEEe----------cCCCcEEEEECCCCc-------eeee-ecccccccEEEEEEcCCCCEEEEEe
Q 010470 352 SNCNALAFSMDGQTIFSG----------HIDGNLRLWDIQTGK-------LLSE-VAAHSLAAVTSISLSRSGNIILTSG 413 (510)
Q Consensus 352 ~~i~~i~~~~~~~~l~~~----------~~dg~i~i~d~~~~~-------~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~ 413 (510)
.... +..++++.+++.. ...+.|...|+.++. .... +.......+..+.+..+ .++++..
T Consensus 290 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~ 367 (711)
T 4hvt_A 290 SDAT-LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATY 367 (711)
T ss_dssp TTCE-EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEE
T ss_pred Ccce-EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEE
Confidence 3322 2334456555532 146779999987642 1222 33333357888888875 5666666
Q ss_pred cCC--cEEEEEcCCce-eeeE-eecCCCeeecCceeEEEcCCCCE-EEEEcC---CCeEEEEeCC
Q 010470 414 RDN--LHNLFDIRSLE-VCGS-LRATGNRVASNWSRSCISPDESY-VAAGSA---DGSVYIWSIS 470 (510)
Q Consensus 414 ~d~--~i~i~d~~~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~-l~~~~~---dg~i~iwd~~ 470 (510)
.++ .+.++|+.++. .... +..... ..+....+++++.. +++.+. -+.++.+|+.
T Consensus 368 ~~~~~~l~~~~~~~g~~~~~~~i~lp~~---~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 368 DNVVAKVVTFTLENEQWTKPVVLKLPYQ---NAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp ETTEEEEEEECEETTEECCCEEECCCST---TCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred ECCEEEEEEEECCCCceEEEeccCCCCC---eEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 676 46677766554 1222 222211 11222445566654 443332 3678888875
No 382
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=95.40 E-value=1.6 Score=40.14 Aligned_cols=166 Identities=11% Similarity=0.094 Sum_probs=95.3
Q ss_pred cEEEEECCCC--eEeeeeeecC-------ceeEEEEc---CC----CCEEE-EecCCCcEEEEECCCCceeeeec----c
Q 010470 333 TLKVWDLHKG--YCVNTIIFHS-------NCNALAFS---MD----GQTIF-SGHIDGNLRLWDIQTGKLLSEVA----A 391 (510)
Q Consensus 333 ~i~iwd~~~~--~~~~~~~~~~-------~i~~i~~~---~~----~~~l~-~~~~dg~i~i~d~~~~~~~~~~~----~ 391 (510)
.|.+||+.++ +.++.+..+. ..+.+.+. |. +.+++ +-...+.|.|||+.+++.-+... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 6778888888 8888776642 36777777 22 23333 44456789999999886554331 0
Q ss_pred cc-------------cccEEEEEEcCC----CCEEEEEecCCcEEEEEcC-----CceeeeEee--cCCCeeecCceeEE
Q 010470 392 HS-------------LAAVTSISLSRS----GNIILTSGRDNLHNLFDIR-----SLEVCGSLR--ATGNRVASNWSRSC 447 (510)
Q Consensus 392 ~~-------------~~~i~~i~~~~~----~~~l~~~~~d~~i~i~d~~-----~~~~~~~~~--~~~~~~~~~~~~~~ 447 (510)
.. ...+..|+++|+ ++.|+.....+. ++|.+. +......+. +...+ .+.-...+
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~kg~-~s~~~~~~ 281 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGNRGK-YNDAIALA 281 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEECCT-TCCEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeeecCC-CCCcceEE
Confidence 00 136888999998 777776665542 233332 221111111 11110 01112256
Q ss_pred Ec-CCCCEEEEEcCCCeEEEEeCCC-c---ceeeccc-c-cCcCEEEEEEeCCCCcEEEe
Q 010470 448 IS-PDESYVAAGSADGSVYIWSISK-A---DIVRTLK-E-HTAPVLSCSWSGLGKPLASA 500 (510)
Q Consensus 448 ~s-~~~~~l~~~~~dg~i~iwd~~~-~---~~~~~~~-~-~~~~v~~~~~~~~~~~l~s~ 500 (510)
++ .+|.++++--..+.|..|+..+ . .....+. . .-..+.++.+.++|.+.+..
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 75 6788888888888999999765 1 1112221 1 22346788887777644444
No 383
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.38 E-value=0.69 Score=35.77 Aligned_cols=78 Identities=15% Similarity=0.202 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 49 EKADNLETELQQCYKAQSRLSEQLVVEVAESRSS-KALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVS 126 (510)
Q Consensus 49 ~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~ 126 (510)
.....|..++.+-...+............+++.+ -.++++..+++..-+.+-..++.+..+|..++......+..++.
T Consensus 58 ~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ 136 (154)
T 2ocy_A 58 DEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTL 136 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444433333333333333333333332 33344444444444444444444444444444444433333333
No 384
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.34 E-value=0.06 Score=58.25 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHH
Q 010470 47 WKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSK 83 (510)
Q Consensus 47 ~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~ 83 (510)
...++..+++++.++......+.+.+.+.......++
T Consensus 855 ~~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le 891 (1184)
T 1i84_S 855 QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLC 891 (1184)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666655555555444444443333333
No 385
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=95.33 E-value=1.8 Score=40.29 Aligned_cols=222 Identities=15% Similarity=0.181 Sum_probs=111.2
Q ss_pred CCCEEEEEeCCCeEEEEEcCCC-C-------e---eEeecC-CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC---
Q 010470 278 DNRSVIAASSSNNLYVWDVNSG-R-------V---RHTLTG-HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG--- 342 (510)
Q Consensus 278 ~~~~l~~~~~d~~i~iwd~~~~-~-------~---~~~~~~-~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~--- 342 (510)
.....++...||.|+.|-.... + . ...+.. ....+..+.++. ...+.+....||.|+.|-....
T Consensus 61 G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~-G~~h~~al~~~G~v~~wG~n~~GqL 139 (389)
T 3kci_A 61 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNS-GGKHCLALSSEGEVYSWGEAEDGKL 139 (389)
T ss_dssp ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECT-TCSEEEEEETTSCEEEEECCGGGTT
T ss_pred CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECc-CCCeEEEEcCCCCEEEEeCCCCCcC
Confidence 3455666778889999864321 1 0 111111 123344556655 5666777778999999965321
Q ss_pred -------eE-eeeeeecC--ceeEEEEcCCCCEEEEecCCCcEEEEECCC-Cc----------eeeeecccccccEEEEE
Q 010470 343 -------YC-VNTIIFHS--NCNALAFSMDGQTIFSGHIDGNLRLWDIQT-GK----------LLSEVAAHSLAAVTSIS 401 (510)
Q Consensus 343 -------~~-~~~~~~~~--~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~-~~----------~~~~~~~~~~~~i~~i~ 401 (510)
.. ...+.... .|..++. ...+.++-..+|.|+.|-... ++ ....+.......|..++
T Consensus 140 G~g~~~~~~~p~~v~~l~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia 217 (389)
T 3kci_A 140 GHGNRSPCDRPRVIESLRGIEVVDVAA--GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIA 217 (389)
T ss_dssp CSSSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEE
T ss_pred CCCCCccCcCCeEecccCCCeEEEEEe--CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEE
Confidence 01 11111111 3444444 345556667789999996432 10 11122222224566666
Q ss_pred EcCCCCEEEEEecCCcEEEEEcCCcee-----------eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470 402 LSRSGNIILTSGRDNLHNLFDIRSLEV-----------CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS 470 (510)
Q Consensus 402 ~~~~~~~l~~~~~d~~i~i~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 470 (510)
......+.++-..+|.|+.|-....-. ...+..... ..+ ..++....+.++-..+|.|+.|-..
T Consensus 218 ~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~---~~v--~~v~~G~~hs~alt~~G~v~~wG~n 292 (389)
T 3kci_A 218 CGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG---LGV--VKVECGSQFSVALTKSGAVYTWGKG 292 (389)
T ss_dssp ECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTT---SCE--EEEEEETTEEEEEETTSCEEEEECC
T ss_pred EcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCC---CcE--EEEeCCCCEEEEEeCCCeEEEEeCC
Confidence 654445667777889999996542111 000110000 011 2233334444555678889999654
Q ss_pred Ccce-----------eecccc-cCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 471 KADI-----------VRTLKE-HTAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 471 ~~~~-----------~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
.... ...+.. ....|..++.. ....+....||.|+.|
T Consensus 293 ~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~~w 341 (389)
T 3kci_A 293 DYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVYTW 341 (389)
T ss_dssp GGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEEEE
T ss_pred CCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEEEe
Confidence 3111 011111 12346555543 2344455677888777
No 386
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=95.32 E-value=0.3 Score=31.17 Aligned_cols=55 Identities=22% Similarity=0.154 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 92 LITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAE 146 (510)
Q Consensus 92 ~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~ 146 (510)
.+..|++++..-+.++..|++.+.-..+..+.|.+|.-.+..+.+-++.++..++
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 4455666666666667777777776667777777777777776666666665543
No 387
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=95.24 E-value=0.31 Score=32.48 Aligned_cols=40 Identities=18% Similarity=0.264 Sum_probs=16.4
Q ss_pred HhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 64 AQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQI 103 (510)
Q Consensus 64 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l 103 (510)
++.-+.+.|...+.........+++.++...+|..++..+
T Consensus 25 AKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l 64 (81)
T 1wt6_A 25 TRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443333333333344333333333333
No 388
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=95.08 E-value=0.33 Score=45.16 Aligned_cols=38 Identities=16% Similarity=0.332 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 102 QIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMT 139 (510)
Q Consensus 102 ~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~ 139 (510)
+|+..+..|+.+++.....+..|+.-++.++.++..||
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455554444444444444444443333333
No 389
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=95.03 E-value=0.66 Score=33.56 Aligned_cols=10 Identities=20% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHH
Q 010470 143 KNAEAENKML 152 (510)
Q Consensus 143 ~~~~~~~~~~ 152 (510)
..+..+|..+
T Consensus 94 ~rLQ~eNd~L 103 (112)
T 1x79_B 94 VRLQKDNDSL 103 (112)
T ss_dssp ----------
T ss_pred HHHHhhccch
Confidence 3333444433
No 390
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=95.00 E-value=0.66 Score=33.40 Aligned_cols=50 Identities=24% Similarity=0.290 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 96 LQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNA 145 (510)
Q Consensus 96 l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~ 145 (510)
+...+...+.+..++..++..+.+.+..+..+.+.+...+......++..
T Consensus 28 ~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ 77 (101)
T 3u59_A 28 AEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555555555555555555555555444444333
No 391
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=94.95 E-value=0.89 Score=34.61 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 91 SLITSLQEELTQIRDECSQLKTELEEKIKALELVVSE 127 (510)
Q Consensus 91 ~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e 127 (510)
..|..+..++.+++.+......+++.+...+..|..|
T Consensus 84 ~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~E 120 (131)
T 3tnu_A 84 EMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQE 120 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444433333333
No 392
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=94.82 E-value=1.8 Score=40.09 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHH
Q 010470 49 EKADNLETELQQCYKAQSRLSEQ 71 (510)
Q Consensus 49 ~~~~~l~~el~~~~k~~~~~~~~ 71 (510)
.+.+++++||.++.+...+..++
T Consensus 321 r~~e~a~ael~~a~k~~a~~~er 343 (551)
T 2b5u_A 321 RNYERARAELNQANEDVARNQER 343 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 393
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=94.46 E-value=3.5 Score=39.31 Aligned_cols=104 Identities=8% Similarity=0.015 Sum_probs=60.6
Q ss_pred cceeEEEEecCCC-EEEEEeCCCeEEEEEcCCCC---eeEeec---------CCCCceEEEEEecC---CCCEEEEEeC-
Q 010470 268 GSVLDLAITHDNR-SVIAASSSNNLYVWDVNSGR---VRHTLT---------GHTDKVCAVDVSKI---SSRHVVSAAY- 330 (510)
Q Consensus 268 ~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~---~~~~~~---------~~~~~v~~i~~~~~---~~~~l~s~~~- 330 (510)
...+.|+|.|++. .++++...|.|++++..... .+..+. ........|+++|. ++.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3457899999996 57777888999999754221 222221 11356788999983 2333333221
Q ss_pred -C----------CcEEEEECCC----------CeEeeeeee---cCceeEEEEcCCCCEEEEecC
Q 010470 331 -D----------RTLKVWDLHK----------GYCVNTIIF---HSNCNALAFSMDGQTIFSGHI 371 (510)
Q Consensus 331 -d----------g~i~iwd~~~----------~~~~~~~~~---~~~i~~i~~~~~~~~l~~~~~ 371 (510)
+ ..|.-|.+.. .+.+..+.. .+....|.|.|||.+.++.+.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 1444465532 123333322 234678999999987776443
No 394
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=94.19 E-value=1.2 Score=41.64 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 109 QLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEA 147 (510)
Q Consensus 109 ~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~ 147 (510)
+|+.++..+++.+......+..|+..++.+..+++++|.
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443334444444444444444444433
No 395
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=94.11 E-value=1.1 Score=32.00 Aligned_cols=9 Identities=33% Similarity=0.612 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 010470 51 ADNLETELQ 59 (510)
Q Consensus 51 ~~~l~~el~ 59 (510)
+..|...|+
T Consensus 26 i~~L~~~L~ 34 (110)
T 2v4h_A 26 LEDLRQQLQ 34 (110)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 396
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=94.06 E-value=0.86 Score=30.68 Aligned_cols=12 Identities=17% Similarity=0.069 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 010470 119 KALELVVSENQQ 130 (510)
Q Consensus 119 ~~~~~l~~e~~~ 130 (510)
..+..+..+.+.
T Consensus 34 ekN~~L~~e~~e 45 (81)
T 2jee_A 34 EKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 397
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=93.95 E-value=3 Score=36.57 Aligned_cols=198 Identities=9% Similarity=0.067 Sum_probs=112.0
Q ss_pred ccceeEEEEecCCCEEEEEeCCCeEEE---EEcCCCCeeEeecCCCCceEEEEEecC-CCCEEEEEeCCCcEEEEECCCC
Q 010470 267 LGSVLDLAITHDNRSVIAASSSNNLYV---WDVNSGRVRHTLTGHTDKVCAVDVSKI-SSRHVVSAAYDRTLKVWDLHKG 342 (510)
Q Consensus 267 ~~~v~~~~~~~~~~~l~~~~~d~~i~i---wd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~ 342 (510)
.+.+..+.......+|+.-++.|.++- |++..+.....+. ....|..+.. +. +..+++..+.+|.++...+..-
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~ 100 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEF 100 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGT
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHh
Confidence 345555555555666777777787664 3333221111132 3556666644 32 4578999999999999986542
Q ss_pred ------eEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCC-------CceeeeecccccccEEEEEEcCCCCEE
Q 010470 343 ------YCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQT-------GKLLSEVAAHSLAAVTSISLSRSGNII 409 (510)
Q Consensus 343 ------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~~i~~i~~~~~~~~l 409 (510)
.....+.....+..+........++..+..|.+..++... ..-+.-+.......|.++...+++..+
T Consensus 101 ~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~l 180 (276)
T 3no0_A 101 EYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYL 180 (276)
T ss_dssp TTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEE
T ss_pred hhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEE
Confidence 2222233334455555555666788888899988887522 111222222222566666655667788
Q ss_pred EEEecCCcEEEEEcCCcee-------eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEE--EeCCC
Q 010470 410 LTSGRDNLHNLFDIRSLEV-------CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYI--WSISK 471 (510)
Q Consensus 410 ~~~~~d~~i~i~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~i--wd~~~ 471 (510)
+..+..|.++...+..... +..+ .....+. .+....+...++..+.+|.+.. ++...
T Consensus 181 l~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv----~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 181 LVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLV----DLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEE----EEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEE----EEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 8889999998888753221 2222 1111111 1222233445666777888777 77543
No 398
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=93.92 E-value=3.1 Score=36.54 Aligned_cols=193 Identities=10% Similarity=0.027 Sum_probs=109.7
Q ss_pred cceEEEEEecCCCEEEEeeCCCeEEE---EeCCCCcceecccccccceeEEEEec--CCCEEEEEeCCCeEEEEEcCCCC
Q 010470 226 GGCASILFEYNSARLISGGQDKSIKL---WDTNTGSLSSTLYGCLGSVLDLAITH--DNRSVIAASSSNNLYVWDVNSGR 300 (510)
Q Consensus 226 ~~v~~~~~s~~~~~l~s~~~dg~i~i---wd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~ 300 (510)
+.+..+.......+|+.-+..|.++- |++..+.....+ .....|..+.. + +..+++..+.+|.++-..+..-.
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll-~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLK-SREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCS-STTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccC-CCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 34555555555556766777887664 344332211112 23456666644 4 56789999999999999876532
Q ss_pred ------eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC---------CeEeeeeeecCceeEEEEcCCCCE
Q 010470 301 ------VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK---------GYCVNTIIFHSNCNALAFSMDGQT 365 (510)
Q Consensus 301 ------~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~i~~i~~~~~~~~ 365 (510)
....+. ..+.+..+.... ....++..+..|.+..++... |...-.+.....+..+...+++..
T Consensus 102 ~~~~G~~~i~lk-egD~l~~~~~~~-~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ 179 (276)
T 3no0_A 102 YKAQGMPIIKLT-EGDEVVSIASSV-DETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPY 179 (276)
T ss_dssp TCSTTEECSCCC-TTCCEEEEEECC-SSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSE
T ss_pred hhcCCeEEEecC-CCCEEEEEEEeC-CCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCE
Confidence 112233 234555555554 456788888899988887532 222222223344555555556678
Q ss_pred EEEecCCCcEEEEECCC-------CceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEE--EEcC
Q 010470 366 IFSGHIDGNLRLWDIQT-------GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNL--FDIR 424 (510)
Q Consensus 366 l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i--~d~~ 424 (510)
++..+..|.+....+.. ++-+..+ ... +.+..+....+...++..+.+|.+.. ++..
T Consensus 180 ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~-~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 180 LLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTK-DTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSS-SCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCC-CcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 88888999988887632 2223333 122 34444433333445556666666666 6554
No 399
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=93.79 E-value=3.6 Score=37.00 Aligned_cols=190 Identities=8% Similarity=0.034 Sum_probs=109.1
Q ss_pred cCCCEEEEeeCCCeEEEEeCCCCc----ceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC---------CCe
Q 010470 235 YNSARLISGGQDKSIKLWDTNTGS----LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS---------GRV 301 (510)
Q Consensus 235 ~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---------~~~ 301 (510)
|+..++++.+.+|.|+--.+...+ ....+.. ...+..+........++..+..|.++-+.... |.+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 456678888999998877543211 1111222 34455555555677788888888877665521 222
Q ss_pred eEee-c-CCCCceEEEEEecC--CCCEEEEEeCCCcEEEEECCC--------CeEeeeeeecCceeEEEEcCCCCEEEEe
Q 010470 302 RHTL-T-GHTDKVCAVDVSKI--SSRHVVSAAYDRTLKVWDLHK--------GYCVNTIIFHSNCNALAFSMDGQTIFSG 369 (510)
Q Consensus 302 ~~~~-~-~~~~~v~~i~~~~~--~~~~l~s~~~dg~i~iwd~~~--------~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 369 (510)
+..+ . .....|.++...+. ++.+++..+.+|.++...+.. |.....+.....+..+........++..
T Consensus 82 i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~ 161 (323)
T 1wp5_A 82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLV 161 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEE
T ss_pred hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEE
Confidence 1111 1 12345655433331 256788899999999988742 2222222323444444444456677888
Q ss_pred cCCCcEEEEECCC-------CceeeeecccccccEEEEEEcCCCC-EEEEEecCCcEEEEEcCC
Q 010470 370 HIDGNLRLWDIQT-------GKLLSEVAAHSLAAVTSISLSRSGN-IILTSGRDNLHNLFDIRS 425 (510)
Q Consensus 370 ~~dg~i~i~d~~~-------~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~i~d~~~ 425 (510)
+.+|.+..|.... ..-+.-+.......|.++...+++. .+++.+..|..+..++..
T Consensus 162 T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 162 THNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp ETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred eCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 8889988887632 1222223323324566665444445 788888888888777653
No 400
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=93.75 E-value=1.1 Score=30.73 Aligned_cols=26 Identities=12% Similarity=0.136 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHH
Q 010470 47 WKEKADNLETELQQCYKAQSRLSEQL 72 (510)
Q Consensus 47 ~~~~~~~l~~el~~~~k~~~~~~~~l 72 (510)
+..++..++.+...+.........++
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l 29 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADK 29 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555444444443333
No 401
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=93.60 E-value=3.9 Score=36.66 Aligned_cols=189 Identities=8% Similarity=0.084 Sum_probs=111.9
Q ss_pred cCCCEEEEeeCCCeEEEEeCCCCccee---------cccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC-------
Q 010470 235 YNSARLISGGQDKSIKLWDTNTGSLSS---------TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS------- 298 (510)
Q Consensus 235 ~~~~~l~s~~~dg~i~iwd~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~------- 298 (510)
++..++++.+.+|.|+-..+....... .+. ....+..+........++..+..|.++-+....
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 456678888999999887664332111 112 234455555555667788888899887776532
Q ss_pred --CCe---eEeecCCCCceEEEEEecC--CCCEEEEEeCCCcEEEEECCC-------CeEeeeeeecCceeEEEEcCCCC
Q 010470 299 --GRV---RHTLTGHTDKVCAVDVSKI--SSRHVVSAAYDRTLKVWDLHK-------GYCVNTIIFHSNCNALAFSMDGQ 364 (510)
Q Consensus 299 --~~~---~~~~~~~~~~v~~i~~~~~--~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~i~~i~~~~~~~ 364 (510)
|.+ ...+. ....|.++...+. ...+++..+..|.++...+.. |.....+.....+..+.....+.
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDE 163 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTC
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCC
Confidence 111 11122 2344555543321 356788889999999987742 22222233334455555544566
Q ss_pred EEEEecCCCcEEEEECCC-------CceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC
Q 010470 365 TIFSGHIDGNLRLWDIQT-------GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS 425 (510)
Q Consensus 365 ~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~ 425 (510)
.++..+.+|.+..+.... .+-+..+.......+.++...+++..+++.+..|..+.+++..
T Consensus 164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 788888899998887642 1122222222235666666655667788888999988888754
No 402
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=93.57 E-value=1 Score=29.99 Aligned_cols=42 Identities=19% Similarity=0.288 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 96 LQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEE 137 (510)
Q Consensus 96 l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~ 137 (510)
+++++.+++..+.....++.+....+..|..|...++.++..
T Consensus 29 i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 29 LSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555554444444433
No 403
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=93.52 E-value=4.1 Score=36.72 Aligned_cols=262 Identities=12% Similarity=0.077 Sum_probs=135.4
Q ss_pred CEEEEeeCCCeEEEEeCCCCcc-------eeccc-ccccceeEEEEecCCCEEEEEeCCCeEEEEEc---CC------CC
Q 010470 238 ARLISGGQDKSIKLWDTNTGSL-------SSTLY-GCLGSVLDLAITHDNRSVIAASSSNNLYVWDV---NS------GR 300 (510)
Q Consensus 238 ~~l~s~~~dg~i~iwd~~~~~~-------~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~---~~------~~ 300 (510)
..+++.+.+|.|+--.+.+... +..+. .....+..+........++.-++.|.++-... .. |.
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~ 83 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ 83 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE
Confidence 4677778888887655322110 11111 12345555555566677777788887665543 32 22
Q ss_pred eeEee-c-CCCCceEEEEEecC--CCCEEEEEeCCCcEEEEECCC-------CeEeeeeeecCceeEEEEcCCCCEEEEe
Q 010470 301 VRHTL-T-GHTDKVCAVDVSKI--SSRHVVSAAYDRTLKVWDLHK-------GYCVNTIIFHSNCNALAFSMDGQTIFSG 369 (510)
Q Consensus 301 ~~~~~-~-~~~~~v~~i~~~~~--~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 369 (510)
++..+ . .....|.++...+. +..+++..+.+|.|+...+.. |.....+.....+..+........++..
T Consensus 84 ~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~ 163 (327)
T 3uc1_A 84 HVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLV 163 (327)
T ss_dssp EHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEE
T ss_pred EHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEE
Confidence 22111 1 12455665544332 467899999999999987653 2222222333445555554556678888
Q ss_pred cCCCcEEEEECC--CC----c---eeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceee-------eEee
Q 010470 370 HIDGNLRLWDIQ--TG----K---LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVC-------GSLR 433 (510)
Q Consensus 370 ~~dg~i~i~d~~--~~----~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-------~~~~ 433 (510)
+..|.+..+... .- + -+.-+.......|.++...+.+.+++..+..|.++.-.+...... ..+.
T Consensus 164 T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~ 243 (327)
T 3uc1_A 164 SANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVM 243 (327)
T ss_dssp ETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSC
T ss_pred ECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEE
Confidence 889998888765 21 1 111122222356777777667778999999999988876533221 1111
Q ss_pred cC--CCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccee---------ecccccCcCEEEEEEeCC-CCcEEEee
Q 010470 434 AT--GNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIV---------RTLKEHTAPVLSCSWSGL-GKPLASAD 501 (510)
Q Consensus 434 ~~--~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~v~~~~~~~~-~~~l~s~~ 501 (510)
.. ...+. .+....+...++..+.+|.+.-++...-... ..+. ....|.++...+. ...+.+.+
T Consensus 244 l~~~~d~lv----~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~-~~d~vv~~~~~~~~~~~~~~~~ 318 (327)
T 3uc1_A 244 YDRRRGRLV----GALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLG-EGDTLLAIARNAEESGDDNAVD 318 (327)
T ss_dssp CCTTTCSEE----EEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCC-TTCCEEEEEECC----------
T ss_pred ecCCCCeEE----EEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecC-CCCEEEEEEEcCCCcceEEEEe
Confidence 11 11111 1222334456666677888777775432221 1122 2345666665543 34455555
Q ss_pred CCC
Q 010470 502 KNG 504 (510)
Q Consensus 502 ~dg 504 (510)
.+|
T Consensus 319 ~~g 321 (327)
T 3uc1_A 319 ANG 321 (327)
T ss_dssp ---
T ss_pred cCC
Confidence 554
No 404
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=93.41 E-value=0.6 Score=30.53 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010470 111 KTELEEKIKALELVVSENQ 129 (510)
Q Consensus 111 ~~~l~~~~~~~~~l~~e~~ 129 (510)
+.++++....+..|+.+.|
T Consensus 46 Ek~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 46 ELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 405
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=93.32 E-value=1.5 Score=30.93 Aligned_cols=38 Identities=11% Similarity=0.225 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 103 IRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTM 140 (510)
Q Consensus 103 l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~ 140 (510)
++.++..|+.+++.+..++..+..|++.+...+..+..
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555666666666666666666666666655555443
No 406
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=93.11 E-value=1.4 Score=30.18 Aligned_cols=9 Identities=22% Similarity=0.390 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 010470 54 LETELQQCY 62 (510)
Q Consensus 54 l~~el~~~~ 62 (510)
|+.+|+.++
T Consensus 23 Lq~qLT~Aq 31 (99)
T 3ni0_A 23 LQRQLTRTQ 31 (99)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 407
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=93.01 E-value=2 Score=31.76 Aligned_cols=54 Identities=22% Similarity=0.345 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 86 LQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMT 139 (510)
Q Consensus 86 ~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~ 139 (510)
..+++....+-+..+.+|+..+.+|+.+++......+.+..|.+.|+.+++.+.
T Consensus 28 k~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 28 KAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455566666667777777777777766666666666666666665543
No 408
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=92.98 E-value=8.7 Score=38.93 Aligned_cols=219 Identities=11% Similarity=0.052 Sum_probs=108.9
Q ss_pred eEEE-EecCCCEEEEEeC-C----CeEEEEEcCCCCeeE-eec-CCCC------ceEEEEEecCCCCEEEEE--------
Q 010470 271 LDLA-ITHDNRSVIAASS-S----NNLYVWDVNSGRVRH-TLT-GHTD------KVCAVDVSKISSRHVVSA-------- 328 (510)
Q Consensus 271 ~~~~-~~~~~~~l~~~~~-d----~~i~iwd~~~~~~~~-~~~-~~~~------~v~~i~~~~~~~~~l~s~-------- 328 (510)
..+. ++|++++++.+-+ . ..++++|+.+++.+. .+. .-.. ....++|.. ++.++++.
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d-~~~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWIN-KDTIIFNLVLHKNEIT 210 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEE-TTEEEECCCCSTTCBC
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEEC-CCEEEEEeCCCCCCcC
Confidence 3444 7889888776532 2 379999999987653 122 0000 113447764 44444432
Q ss_pred --eCCCcEEEEECCCCeEe--eeeeecC-c-eeEEEEcCCCCE-----EEEec---CCCcEEEEECCC--Cceeeeeccc
Q 010470 329 --AYDRTLKVWDLHKGYCV--NTIIFHS-N-CNALAFSMDGQT-----IFSGH---IDGNLRLWDIQT--GKLLSEVAAH 392 (510)
Q Consensus 329 --~~dg~i~iwd~~~~~~~--~~~~~~~-~-i~~i~~~~~~~~-----l~~~~---~dg~i~i~d~~~--~~~~~~~~~~ 392 (510)
+....|+.|.+-+...- ..+.... . ..+...++++.+ +++.+ ....+++.|... +. ...+..+
T Consensus 211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~ 289 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMP 289 (711)
T ss_dssp TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSC
T ss_pred cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecC
Confidence 12356888887654221 1222221 2 234555666662 33322 224567777653 33 2333333
Q ss_pred ccccEEEEEEcCCCCEEEEE----------ecCCcEEEEEcCCce-------eeeE-eecCCCeeecCceeEEEcCCCCE
Q 010470 393 SLAAVTSISLSRSGNIILTS----------GRDNLHNLFDIRSLE-------VCGS-LRATGNRVASNWSRSCISPDESY 454 (510)
Q Consensus 393 ~~~~i~~i~~~~~~~~l~~~----------~~d~~i~i~d~~~~~-------~~~~-~~~~~~~~~~~~~~~~~s~~~~~ 454 (510)
.... +..++++.+++.. ...+.|...|+.++. .... +...... .+..+.+..+ .+
T Consensus 290 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~-~l 362 (711)
T 4hvt_A 290 SDAT---LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANE---VFNFISTTKD-RV 362 (711)
T ss_dssp TTCE---EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTE---EEEEEEECSS-CE
T ss_pred Ccce---EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCC---eEEEEEEECC-EE
Confidence 2122 2234455555532 145678888887642 1122 2222111 1233566654 56
Q ss_pred EEEEcCCC--eEEEEeCCCcc-eeec-cccc-CcCEEEEEEeCCCCcEE
Q 010470 455 VAAGSADG--SVYIWSISKAD-IVRT-LKEH-TAPVLSCSWSGLGKPLA 498 (510)
Q Consensus 455 l~~~~~dg--~i~iwd~~~~~-~~~~-~~~~-~~~v~~~~~~~~~~~l~ 498 (510)
+++...+| .|.++++.++. .... +... .+.+..+.+++++..++
T Consensus 363 ~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~ 411 (711)
T 4hvt_A 363 FLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEAL 411 (711)
T ss_dssp EEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEE
T ss_pred EEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEE
Confidence 66666676 47777776664 2222 2211 24566667777766443
No 409
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=92.96 E-value=2.4 Score=40.54 Aligned_cols=29 Identities=17% Similarity=0.094 Sum_probs=4.3
Q ss_pred HHHHHHHHhhhhhhhcccchhhHhhcCcc
Q 010470 12 KHALKALRKRHLVEEGAHAPAIIALSRPI 40 (510)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (510)
-|-.+-|..|..-.+..+.++.....+|.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (501)
T 1wle_A 6 HHHSSGLVPRGSATERQDRNLLYEHAREG 34 (501)
T ss_dssp ------------------CCHHHHHHHTT
T ss_pred cccccCCcccccccccchhhhhhhccCCc
Confidence 33344444444444444444443333333
No 410
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=92.89 E-value=2.6 Score=32.73 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 96 LQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEE 137 (510)
Q Consensus 96 l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~ 137 (510)
+..++..+...+++.....+.+.+....|..+.+.+...+..
T Consensus 75 yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~ 116 (155)
T 2efr_A 75 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYA 116 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444444444443333
No 411
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.24 E-value=2.9 Score=31.70 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 81 SSKALLQEKESLITSLQEELTQIRDEC 107 (510)
Q Consensus 81 ~~~~~~~~~~~~i~~l~~~l~~l~~~~ 107 (510)
.+++.++.++.++..++.....++..+
T Consensus 42 elrr~iq~L~~el~~l~~~~~sLE~~l 68 (131)
T 3tnu_A 42 ELRRTMQNLEIELQSQLSMKASLENSL 68 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 334444444444443333333333333
No 412
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=92.23 E-value=6.4 Score=36.14 Aligned_cols=39 Identities=13% Similarity=0.297 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 101 TQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMT 139 (510)
Q Consensus 101 ~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~ 139 (510)
++|+.++.-|+..++.....+..|+.-++.++.++..||
T Consensus 114 ~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE 152 (491)
T 1m1j_A 114 TELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLE 152 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555444444444444444444443
No 413
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=91.90 E-value=6.9 Score=35.24 Aligned_cols=197 Identities=9% Similarity=0.021 Sum_probs=111.4
Q ss_pred ceEEEEEecCCCEEEEeeCCCeEEE---EeCCCC------cceeccc--ccccceeEEEEec---CCCEEEEEeCCCeEE
Q 010470 227 GCASILFEYNSARLISGGQDKSIKL---WDTNTG------SLSSTLY--GCLGSVLDLAITH---DNRSVIAASSSNNLY 292 (510)
Q Consensus 227 ~v~~~~~s~~~~~l~s~~~dg~i~i---wd~~~~------~~~~~~~--~~~~~v~~~~~~~---~~~~l~~~~~d~~i~ 292 (510)
.+..+........|+.-+..|.++- |++... .++..+. .....|.++...+ +..+++..+.+|.++
T Consensus 43 ~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iK 122 (327)
T 3uc1_A 43 IVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVK 122 (327)
T ss_dssp CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEE
T ss_pred EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEE
Confidence 4555544455556666666776554 444432 2221111 1234555554433 578999999999999
Q ss_pred EEEcCCCC-------eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECC--C---------CeEeeeeeecCce
Q 010470 293 VWDVNSGR-------VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH--K---------GYCVNTIIFHSNC 354 (510)
Q Consensus 293 iwd~~~~~-------~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~--~---------~~~~~~~~~~~~i 354 (510)
-..+..-. ....+.. .+.+..+.... ....++..+..|.+..+... . |...-.+.....+
T Consensus 123 r~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~V 200 (327)
T 3uc1_A 123 KSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRL 200 (327)
T ss_dssp EEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCE
T ss_pred EeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEE
Confidence 98875422 1222333 34555555544 45677778889999888776 2 1111122223446
Q ss_pred eEEEEcCCCCEEEEecCCCcEEEEECCC-------Cceeeeecccc-cccEEEEEEcCCCCEEEEEecCCcEEEEEcCC
Q 010470 355 NALAFSMDGQTIFSGHIDGNLRLWDIQT-------GKLLSEVAAHS-LAAVTSISLSRSGNIILTSGRDNLHNLFDIRS 425 (510)
Q Consensus 355 ~~i~~~~~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~ 425 (510)
.++...+.+..++..+..|.++.-.+.. ++-+..+.... .+.+..+....+...++..+.+|.+.-++...
T Consensus 201 v~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 201 LSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 6666666677888899999988876532 12222222211 13454444444455666667777777776643
No 414
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=91.86 E-value=2.3 Score=29.74 Aligned_cols=11 Identities=18% Similarity=0.431 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 010470 93 ITSLQEELTQI 103 (510)
Q Consensus 93 i~~l~~~l~~l 103 (510)
...+..+++.|
T Consensus 49 ~~~ie~ElEeL 59 (97)
T 2eqb_B 49 ADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333344333
No 415
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=91.83 E-value=7.7 Score=35.63 Aligned_cols=190 Identities=14% Similarity=0.078 Sum_probs=110.4
Q ss_pred ecCCCEEEEeeCCCeEEEEeCCCC---------cceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC------
Q 010470 234 EYNSARLISGGQDKSIKLWDTNTG---------SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS------ 298 (510)
Q Consensus 234 s~~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~------ 298 (510)
-|+..++++.+.+|.|+--.+.+. .....+. ....+..+........++..+..|.++-+....
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 367778999999999987654321 1111222 245566666666677788888888877665421
Q ss_pred ---CCeeEe---ecCCCCceEEEEEec--CCCCEEEEEeCCCcEEEEECCC-------CeEeeeeeecCceeEEEEcCCC
Q 010470 299 ---GRVRHT---LTGHTDKVCAVDVSK--ISSRHVVSAAYDRTLKVWDLHK-------GYCVNTIIFHSNCNALAFSMDG 363 (510)
Q Consensus 299 ---~~~~~~---~~~~~~~v~~i~~~~--~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~i~~i~~~~~~ 363 (510)
|.++.. +. ....|.++...+ ..+.+++.++..|.++...+.. |.....+.....+..+......
T Consensus 83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~ 161 (370)
T 3l6v_A 83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGD 161 (370)
T ss_dssp TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSC
T ss_pred ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCC
Confidence 222211 22 345566554432 1356899999999999987642 2222222223344444444455
Q ss_pred CEEEEecCCCcEEEEECCC-------CceeeeecccccccEEEEEEcC--------------------------------
Q 010470 364 QTIFSGHIDGNLRLWDIQT-------GKLLSEVAAHSLAAVTSISLSR-------------------------------- 404 (510)
Q Consensus 364 ~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~~i~~i~~~~-------------------------------- 404 (510)
..++..+.+|.+..|+... ..-+.-+.......|.++...+
T Consensus 162 ~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~ 241 (370)
T 3l6v_A 162 RDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVA 241 (370)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC------------------------------
T ss_pred ceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEeccccccccccccccccccccccccccccccccc
Confidence 6777788889888887532 1112222222224555554443
Q ss_pred ---CCCEEEEEecCCcEEEEEcCC
Q 010470 405 ---SGNIILTSGRDNLHNLFDIRS 425 (510)
Q Consensus 405 ---~~~~l~~~~~d~~i~i~d~~~ 425 (510)
++..+++.+..|..+...+..
T Consensus 242 ~~~~~~~il~vTe~G~gKrt~~~e 265 (370)
T 3l6v_A 242 DNGDVAYILTATENGYGKRTPLAE 265 (370)
T ss_dssp -----CEEEEEETTSEEEEEEGGG
T ss_pred cccCCceEEEeeCCCCEEEEEHHH
Confidence 456788889999888887753
No 416
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=91.82 E-value=1.3 Score=26.85 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 95 SLQEELTQIRDECSQLKTELEEKIKALELVVSENQQ 130 (510)
Q Consensus 95 ~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~ 130 (510)
+++.++..+..+...|..-+.++..++..|+.+.+.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455444444444444444444444444433
No 417
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.77 E-value=3.3 Score=31.31 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 010470 131 IRAQLEEMTMKAKNA 145 (510)
Q Consensus 131 l~~~~~~~~~~~~~~ 145 (510)
++..+..++..+..+
T Consensus 80 ~q~~i~~lE~eL~~~ 94 (129)
T 3tnu_B 80 ARNKLAELEEALQKA 94 (129)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHH
Confidence 333334444444333
No 418
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=91.54 E-value=2.2 Score=28.71 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 82 SKALLQEKESLITSLQEELTQIRDEC 107 (510)
Q Consensus 82 ~~~~~~~~~~~i~~l~~~l~~l~~~~ 107 (510)
++..++..+..+.+-+.+-..++.++
T Consensus 25 Le~~v~~le~~Le~s~~~q~~~~~El 50 (79)
T 3cvf_A 25 LEHQLRAMERSLEEARAERERARAEV 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 419
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=91.44 E-value=0.29 Score=36.68 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 86 LQEKESLITSLQEELTQIRDECSQLKTELEEK 117 (510)
Q Consensus 86 ~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~ 117 (510)
+.+..+++..-+.+-..++.+..+|..++...
T Consensus 84 FeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~ 115 (135)
T 2e7s_A 84 FDEANNLVADARMEKYAIEILNKRLTEQLREK 115 (135)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 420
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=91.38 E-value=4.1 Score=39.01 Aligned_cols=79 Identities=11% Similarity=0.130 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhhHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 52 DNLETELQQCYKAQSRLSEQLVVEVAESRS-SKALLQE--KESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSEN 128 (510)
Q Consensus 52 ~~l~~el~~~~k~~~~~~~~l~~~~~~~~~-~~~~~~~--~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~ 128 (510)
..+...++++..-.....+.+....+..+. +.+...+ ....-..|+++|+++++-..+++.+...+......|.+-+
T Consensus 355 ~~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (471)
T 3mq9_A 355 YAVRTAVINAASGRQTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASL 434 (471)
T ss_dssp HHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHH
Confidence 345555555443333444444444443333 3222222 2233344777777777777777777776666655555444
Q ss_pred HH
Q 010470 129 QQ 130 (510)
Q Consensus 129 ~~ 130 (510)
+.
T Consensus 435 ~~ 436 (471)
T 3mq9_A 435 DA 436 (471)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 421
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=91.32 E-value=7.6 Score=34.61 Aligned_cols=188 Identities=12% Similarity=0.113 Sum_probs=107.1
Q ss_pred cCCCEEEEeeCCCeEEEEeCCCCccee---------cccccccceeEEEEecCCCEEEEEeCCCeEEEEEcC---C----
Q 010470 235 YNSARLISGGQDKSIKLWDTNTGSLSS---------TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVN---S---- 298 (510)
Q Consensus 235 ~~~~~l~s~~~dg~i~iwd~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~---~---- 298 (510)
|+..++++.+.+|.|+--.+.+.+... .+. ....+..+........++..+..|.++-+... .
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 345678888999999877665432211 111 23344455555566778888888887666542 2
Q ss_pred --CCeeE---eecCCCCceEEEEEec--CCCCEEEEEeCCCcEEEEECCC-------CeEeeeeeecCceeEEEEcCCCC
Q 010470 299 --GRVRH---TLTGHTDKVCAVDVSK--ISSRHVVSAAYDRTLKVWDLHK-------GYCVNTIIFHSNCNALAFSMDGQ 364 (510)
Q Consensus 299 --~~~~~---~~~~~~~~v~~i~~~~--~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~i~~i~~~~~~~ 364 (510)
|.++. .+. ....|.++...+ .++.+++..+.+|.++-..+.. |.....+.....+..+....+..
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~ 158 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGED 158 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTC
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCC
Confidence 22211 122 334566554422 2456788899999999987641 22222222334444444444556
Q ss_pred EEEEecCCCcEEEEECCC-------CceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC
Q 010470 365 TIFSGHIDGNLRLWDIQT-------GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR 424 (510)
Q Consensus 365 ~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 424 (510)
.++..+.+|.+..++... ..-+.-+.......|.++...+++..+++.+..|.++-.++.
T Consensus 159 ~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 159 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred EEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 777888889888887632 112222222233566666655556678888889988888764
No 422
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=91.20 E-value=4.2 Score=31.44 Aligned_cols=42 Identities=14% Similarity=0.295 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 101 TQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKA 142 (510)
Q Consensus 101 ~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~ 142 (510)
.....++..|..++.+.......+..++..+..+++.|...+
T Consensus 54 ~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasL 95 (154)
T 2ocy_A 54 SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 95 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444434444445555555555555443
No 423
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=90.74 E-value=7.3 Score=37.30 Aligned_cols=12 Identities=17% Similarity=0.318 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 010470 48 KEKADNLETELQ 59 (510)
Q Consensus 48 ~~~~~~l~~el~ 59 (510)
++.++.++++++
T Consensus 372 eeal~~~~~~i~ 383 (471)
T 3mq9_A 372 DEALKDAQTRIT 383 (471)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 424
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=90.74 E-value=2.5 Score=28.10 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 84 ALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRA 133 (510)
Q Consensus 84 ~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~ 133 (510)
...+.....|..+..++.+++.+......+++++...+..|..|....+.
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRk 54 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRK 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666677777777777766667777777766666666655543
No 425
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=90.55 E-value=4.1 Score=30.22 Aligned_cols=37 Identities=11% Similarity=0.107 Sum_probs=22.0
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHH
Q 010470 46 EWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSS 82 (510)
Q Consensus 46 ~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~ 82 (510)
..+..+..|+..+..+......+.-++..........
T Consensus 17 ~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edf 53 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRL 53 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777776666665554554444444433
No 426
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=90.48 E-value=3.1 Score=28.73 Aligned_cols=52 Identities=17% Similarity=0.168 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 84 ALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQL 135 (510)
Q Consensus 84 ~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~ 135 (510)
..++.....|..+..++.+++.+......+++.+...+..|..|....+.-+
T Consensus 28 ~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLL 79 (86)
T 1x8y_A 28 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3445556666667777777777777777777777777777776666655433
No 427
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=90.45 E-value=5 Score=31.01 Aligned_cols=65 Identities=17% Similarity=0.186 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 88 EKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKML 152 (510)
Q Consensus 88 ~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 152 (510)
..+..+..+..++...+........++++..+.+..+..+++.........+.++..++.+....
T Consensus 49 ~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~ 113 (147)
T 2b9c_A 49 KDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTV 113 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666666667777777777777777777777777777777777776665443
No 428
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=90.44 E-value=11 Score=35.08 Aligned_cols=265 Identities=15% Similarity=0.177 Sum_probs=124.2
Q ss_pred ceEEEEEecCCCEEEEeeCCCeEEEEeCCCC-cc----------eecccc-cccceeEEEEecCCCEEEEEeCC-CeEEE
Q 010470 227 GCASILFEYNSARLISGGQDKSIKLWDTNTG-SL----------SSTLYG-CLGSVLDLAITHDNRSVIAASSS-NNLYV 293 (510)
Q Consensus 227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~----------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-~~i~i 293 (510)
.|..|+.. +.+.+.-..||.|..|-.... ++ ...+.. ....|..++.. ..+.++...+ +.|+.
T Consensus 17 ~v~~ia~G--~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G--~~ht~al~~~gg~v~~ 92 (406)
T 4d9s_A 17 KVLIISAG--ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG--ADHTVAYSQSGMEVYS 92 (406)
T ss_dssp CEEEEEEC--SSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTTTEEEE
T ss_pred ceEEEecC--CCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeC--cceEEEEECCCCEEEE
Confidence 34444433 345555566788888865331 11 111111 12245555543 3344444455 48999
Q ss_pred EEcCCC-C--------ee--EeecC-CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC-e---------Ee-eeeee
Q 010470 294 WDVNSG-R--------VR--HTLTG-HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG-Y---------CV-NTIIF 350 (510)
Q Consensus 294 wd~~~~-~--------~~--~~~~~-~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-~---------~~-~~~~~ 350 (510)
|-.... + .. ..+.. ....|..|+. ...+.+....+|.|+.|-.... + .. ..+..
T Consensus 93 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~---G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~ 169 (406)
T 4d9s_A 93 WGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIAC---GDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQA 169 (406)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE---CSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGG
T ss_pred EcCCCCcCCCCCCCCccccceEecccCCCCEEEEEE---ChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecc
Confidence 954321 1 00 11111 2235666665 3456666678999999975421 1 11 11111
Q ss_pred cC--ceeEEEEcCCCCEEEEecCCCcEEEEECCCC-c----------eeeeecccccccEEEEEEcCCCCEEEEEecCCc
Q 010470 351 HS--NCNALAFSMDGQTIFSGHIDGNLRLWDIQTG-K----------LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNL 417 (510)
Q Consensus 351 ~~--~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~----------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~ 417 (510)
.. .|..++. ...+.++-..+|.|+.|-.... + ....+.......|..++.. ..+.++-..+|.
T Consensus 170 ~~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~ht~~l~~~G~ 245 (406)
T 4d9s_A 170 FEGIRIKMVAA--GAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG--WRHTISVSYSGA 245 (406)
T ss_dssp GTTCCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEEC--SSEEEEEETTCC
T ss_pred cCCCcEEEEec--CCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEEC--CCcEEEEcCCCC
Confidence 11 3444544 3455566677899999964321 1 1111111111345555443 344555567888
Q ss_pred EEEEEcCCceee-----------eEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccee-----------
Q 010470 418 HNLFDIRSLEVC-----------GSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIV----------- 475 (510)
Q Consensus 418 i~i~d~~~~~~~-----------~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~----------- 475 (510)
|+.|-....-.+ ..+..... ..+ ..++....+.++-..||.|+.|-....-.+
T Consensus 246 v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~---~~v--~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p 320 (406)
T 4d9s_A 246 LYTYGWSKYGQLGHGDLEDHLIPHKLEALSN---SFI--SQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSP 320 (406)
T ss_dssp EEEEECCTTSTTCSSSCCCEEEEEECGGGTT---SCE--EEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEE
T ss_pred EEEeeCCCCCCCCCCCCcCccccEEecccCC---CCE--EEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccC
Confidence 888865421110 00110000 011 233334445555567888998864431110
Q ss_pred eccc-ccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470 476 RTLK-EHTAPVLSCSWSGLGKPLASADKNGVVCVW 509 (510)
Q Consensus 476 ~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 509 (510)
..+. .....|..++.. ..+.+....||.|+.|
T Consensus 321 ~~v~~~~~~~v~~va~G--~~hs~alt~~G~v~~w 353 (406)
T 4d9s_A 321 VQVRFPDDQKVVQVSCG--WRHTLAVTERNNVFAW 353 (406)
T ss_dssp EEECCGGGCCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred EEEeccCCCcEEEEEeC--CCeEEEEeCCCCEEEe
Confidence 0011 112345555543 2344445567778777
No 429
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=90.36 E-value=5.2 Score=31.08 Aligned_cols=52 Identities=10% Similarity=0.169 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 96 LQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEA 147 (510)
Q Consensus 96 l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~ 147 (510)
..+.-+.++.+++.|..+++++....+........|...+..++..+.....
T Consensus 68 asqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Ke 119 (155)
T 2efr_A 68 YSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKL 119 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666666666666666665555555666666666555544433
No 430
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=90.20 E-value=1.2 Score=24.01 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010470 80 RSSKALLQEKESLITSLQEELTQ 102 (510)
Q Consensus 80 ~~~~~~~~~~~~~i~~l~~~l~~ 102 (510)
++++..+.+++.+|..|+++..+
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~e 32 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKE 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHH
Confidence 33444444445544444444443
No 431
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=89.92 E-value=10 Score=33.84 Aligned_cols=188 Identities=11% Similarity=0.123 Sum_probs=106.1
Q ss_pred cCCCEEEEEeCCCeEEEEEcCCCCe-------eE--eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECC---CC--
Q 010470 277 HDNRSVIAASSSNNLYVWDVNSGRV-------RH--TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH---KG-- 342 (510)
Q Consensus 277 ~~~~~l~~~~~d~~i~iwd~~~~~~-------~~--~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~---~~-- 342 (510)
|+..++++.+.+|.|+-..+..-+. .. .+.. .+.+..+.... ....++..+..|.++-+... ..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~-~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVN-THDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEEC-CCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 4667889999999999887653321 11 1222 23444444444 45667777788887777643 11
Q ss_pred ----eEe---eeeeecCceeEEEEcC---CCCEEEEecCCCcEEEEECCC-------CceeeeecccccccEEEEEEcCC
Q 010470 343 ----YCV---NTIIFHSNCNALAFSM---DGQTIFSGHIDGNLRLWDIQT-------GKLLSEVAAHSLAAVTSISLSRS 405 (510)
Q Consensus 343 ----~~~---~~~~~~~~i~~i~~~~---~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~~i~~i~~~~~ 405 (510)
.++ -.+.....+.++...+ ++.+++..+..|.++...+.. |.....+.. ...+..+.....
T Consensus 84 ~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~--~d~lv~~~~~~~ 161 (312)
T 1suu_A 84 ASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND--KDFVTSAEIVFK 161 (312)
T ss_dssp ----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT--TCCEEEEEEECT
T ss_pred cCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC--CCEEEEEEEeCC
Confidence 110 0112223344443332 467788889999998887632 222223332 256666665555
Q ss_pred CCEEEEEecCCcEEEEEcCCcee-------eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC
Q 010470 406 GNIILTSGRDNLHNLFDIRSLEV-------CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK 471 (510)
Q Consensus 406 ~~~l~~~~~d~~i~i~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 471 (510)
+..++..+.+|.+..+....-.. +..+..... ..+..+..-.++..|++.+.+|....+++..
T Consensus 162 ~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~---d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 162 DEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEG---DLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTT---CCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCC---CEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 66788888999998888754211 111111111 1112233444566788888899999888753
No 432
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=89.63 E-value=4.1 Score=28.81 Aligned_cols=6 Identities=33% Similarity=0.540 Sum_probs=2.1
Q ss_pred HHHHHH
Q 010470 97 QEELTQ 102 (510)
Q Consensus 97 ~~~l~~ 102 (510)
..++..
T Consensus 38 ~~el~~ 43 (96)
T 3q8t_A 38 AENLEK 43 (96)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 433
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=89.55 E-value=3.2 Score=29.13 Aligned_cols=16 Identities=6% Similarity=0.001 Sum_probs=9.3
Q ss_pred cHHHHHHHHHHHHHHH
Q 010470 46 EWKEKADNLETELQQC 61 (510)
Q Consensus 46 ~~~~~~~~l~~el~~~ 61 (510)
-....+..|++|+...
T Consensus 32 ~tM~~ieeLQ~Ei~~~ 47 (107)
T 2k48_A 32 FTMSTLQELQENITAH 47 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH
Confidence 3445566666666653
No 434
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=89.19 E-value=4.4 Score=28.57 Aligned_cols=43 Identities=19% Similarity=0.350 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 95 SLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEE 137 (510)
Q Consensus 95 ~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~ 137 (510)
++.+.+.+++.+..+...+++.+++....|+.+.+.++.++.+
T Consensus 41 e~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 41 ELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444555555555555555555554443
No 435
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=88.98 E-value=12 Score=33.45 Aligned_cols=100 Identities=13% Similarity=0.179 Sum_probs=41.6
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 010470 46 EWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDEC----SQLKTELEEKIKAL 121 (510)
Q Consensus 46 ~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~----~~l~~~l~~~~~~~ 121 (510)
.|+..+++.++.+. ++..++.+.|....+........+..+...+.+-++........+ .+|+.++.-+++.+
T Consensus 53 rLqg~Ldk~er~~~---~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V 129 (390)
T 1deq_A 53 RMKGLIDEVDQDFT---SRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKV 129 (390)
T ss_pred hHHHHHHHhhhhHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555553333 345555555544444444333333333333333222222222222 23344444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 122 ELVVSENQQIRAQLEEMTMKAKNAEAE 148 (510)
Q Consensus 122 ~~l~~e~~~l~~~~~~~~~~~~~~~~~ 148 (510)
..-...+..|+..++.+..++++++..
T Consensus 130 ~~q~~~ir~Lq~~l~~q~~kiqRLE~~ 156 (390)
T 1deq_A 130 IEQVQRINLLQKNVRDQLVDMKRLEVD 156 (390)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322224445555555555555555443
No 436
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=88.94 E-value=5 Score=28.83 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 124 VVSENQQIRAQLEEMTMKAKNAEAEN 149 (510)
Q Consensus 124 l~~e~~~l~~~~~~~~~~~~~~~~~~ 149 (510)
|+.|...|...+.....+++.++.++
T Consensus 76 LqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 76 LEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33344444444444444444444333
No 437
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=88.84 E-value=1.2 Score=23.79 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 107 CSQLKTELEEKIKALELVVSENQQIRA 133 (510)
Q Consensus 107 ~~~l~~~l~~~~~~~~~l~~e~~~l~~ 133 (510)
..+|+.+++++...+..|++|...|+.
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 356677777777777777777666665
No 438
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=88.77 E-value=3.9 Score=28.93 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 91 SLITSLQEELTQIRDECSQLKTEL 114 (510)
Q Consensus 91 ~~i~~l~~~l~~l~~~~~~l~~~l 114 (510)
+.|.+|..+.+.|++++..|+.++
T Consensus 19 ~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 19 LKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444
No 439
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.33 E-value=6 Score=29.73 Aligned_cols=37 Identities=14% Similarity=0.295 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 106 ECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKA 142 (510)
Q Consensus 106 ~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~ 142 (510)
++..|..++.+.......+..++..+..+++.+...+
T Consensus 47 e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 47 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 83 (135)
T ss_dssp HHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444444555555554443
No 440
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=87.98 E-value=26 Score=36.02 Aligned_cols=150 Identities=11% Similarity=0.070 Sum_probs=76.8
Q ss_pred ccceEEEEEecC-CCEEEEeeCCCeEEEEeCCCCcceecccc-------cccceeEEEEecCC-CEEEEEeCCCe----E
Q 010470 225 EGGCASILFEYN-SARLISGGQDKSIKLWDTNTGSLSSTLYG-------CLGSVLDLAITHDN-RSVIAASSSNN----L 291 (510)
Q Consensus 225 ~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~-~~l~~~~~d~~----i 291 (510)
.+.|.+|+++|. ...++.++..+.|...+= .|+.-..+.. ....+.+|+++|.+ ..++++..... -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecC-CCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 357999999985 456777777776665542 2332222221 13468999999853 44555543211 2
Q ss_pred EEEE-cCCCCeeEeecCC-------C--CceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee-------ecCce
Q 010470 292 YVWD-VNSGRVRHTLTGH-------T--DKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII-------FHSNC 354 (510)
Q Consensus 292 ~iwd-~~~~~~~~~~~~~-------~--~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~i 354 (510)
.||- .+.|+.-..+... . ..+..++++|.+.+.++.+...+.|.. ....|+.-..+. ....+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCCe
Confidence 3333 3334422222110 1 135668888865667777664444322 222222111111 11347
Q ss_pred eEEEEcC-CCCEEEEecCC-CcEE
Q 010470 355 NALAFSM-DGQTIFSGHID-GNLR 376 (510)
Q Consensus 355 ~~i~~~~-~~~~l~~~~~d-g~i~ 376 (510)
..+.++| ++..++++..+ +.|+
T Consensus 172 ~~i~~~p~~~~~~~~~~~~~~~v~ 195 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATAPQGMY 195 (789)
T ss_dssp EEEEECTTSTTCEEEEESSTTCEE
T ss_pred EEEEECCCCCCEEEEEEcCCCeEE
Confidence 7888888 44456655544 4443
No 441
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=87.97 E-value=4.9 Score=27.60 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 86 LQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRA 133 (510)
Q Consensus 86 ~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~ 133 (510)
+...+..|..+..++.+++.+......+++.+...+..|..|....+.
T Consensus 28 ~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRk 75 (84)
T 1gk4_A 28 AANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRK 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 445566666677777777777777777777777777766666655543
No 442
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=87.55 E-value=24 Score=35.11 Aligned_cols=73 Identities=8% Similarity=0.058 Sum_probs=46.8
Q ss_pred CCceEEEEEecCCCCEEEEEeCCCcEEEEECCC-------CeEeeeeeecCceeEEEEc-CCCCEEEEecCCCcEEEEEC
Q 010470 309 TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK-------GYCVNTIIFHSNCNALAFS-MDGQTIFSGHIDGNLRLWDI 380 (510)
Q Consensus 309 ~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~i~~i~~~-~~~~~l~~~~~dg~i~i~d~ 380 (510)
...|..+.... +..+++.++..|.++...+.. |...-.+.....+..+... ..+..++..+.+|....|+.
T Consensus 553 ~e~i~~~~~~~-~~~~l~~~T~~G~vk~~~l~~~~~~~~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~ 631 (716)
T 1zvu_A 553 GATVDHMLMES-DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPV 631 (716)
T ss_dssp TCCEEEEECCC-TTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEES
T ss_pred CCeEEEEEEec-CCceEEEEeCCceEEEecHHHhcccCccceEEEeeCCCCEEEEEEEecCCCCEEEEEeCCCeEEEEEH
Confidence 34566654444 567788889999999887642 2233333333444444444 34567888889999999987
Q ss_pred CC
Q 010470 381 QT 382 (510)
Q Consensus 381 ~~ 382 (510)
..
T Consensus 632 ~~ 633 (716)
T 1zvu_A 632 SD 633 (716)
T ss_dssp TT
T ss_pred HH
Confidence 54
No 443
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=87.49 E-value=9.6 Score=40.23 Aligned_cols=38 Identities=13% Similarity=0.259 Sum_probs=33.3
Q ss_pred ceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeec
Q 010470 269 SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLT 306 (510)
Q Consensus 269 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 306 (510)
.+.+++..++..++++.+.|+++++|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 56778888899999999999999999999999877653
No 444
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=87.47 E-value=17 Score=33.35 Aligned_cols=187 Identities=12% Similarity=0.092 Sum_probs=105.8
Q ss_pred cceEEEEEecCCCEEEEeeC---------------CCeEEEEeCCCC--cceecccc------cccceeEEEEe---cC-
Q 010470 226 GGCASILFEYNSARLISGGQ---------------DKSIKLWDTNTG--SLSSTLYG------CLGSVLDLAIT---HD- 278 (510)
Q Consensus 226 ~~v~~~~~s~~~~~l~s~~~---------------dg~i~iwd~~~~--~~~~~~~~------~~~~v~~~~~~---~~- 278 (510)
-.|..+...+++.+-+.-+. --.|.+||+.++ +.++++.- ....+..+.+. |+
T Consensus 87 vsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~ 166 (381)
T 3q6k_A 87 TSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKG 166 (381)
T ss_dssp SCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTT
T ss_pred EEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCC
Confidence 46888888887764333211 125889999999 87766532 24567888887 22
Q ss_pred ---CCEEEEEe-CCCeEEEEEcCCCCeeEeecC--------------C----CCceEEEEEecCC---CCEEEEEeCCC-
Q 010470 279 ---NRSVIAAS-SSNNLYVWDVNSGRVRHTLTG--------------H----TDKVCAVDVSKIS---SRHVVSAAYDR- 332 (510)
Q Consensus 279 ---~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~--------------~----~~~v~~i~~~~~~---~~~l~s~~~dg- 332 (510)
+.+++.+. ..+.|.|+|+.+++..+.+.. . ...+..++.+|.. ++.|+.+...+
T Consensus 167 ~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~ 246 (381)
T 3q6k_A 167 DCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI 246 (381)
T ss_dssp TSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS
T ss_pred CCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC
Confidence 34555444 567899999998875544321 0 1356777777731 34444443322
Q ss_pred cEEEEE---CCC---CeEeeeeeec---CceeEEEEc-CCCCEEEEecCCCcEEEEECCC-C---ceeee-ecccccccE
Q 010470 333 TLKVWD---LHK---GYCVNTIIFH---SNCNALAFS-MDGQTIFSGHIDGNLRLWDIQT-G---KLLSE-VAAHSLAAV 397 (510)
Q Consensus 333 ~i~iwd---~~~---~~~~~~~~~~---~~i~~i~~~-~~~~~l~~~~~dg~i~i~d~~~-~---~~~~~-~~~~~~~~i 397 (510)
.++--. ++. ...+..+... +....+++. .+|..+++--....|..|+..+ . ..... ........+
T Consensus 247 ~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~p 326 (381)
T 3q6k_A 247 KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFG 326 (381)
T ss_dssp EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSE
T ss_pred cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCcccc
Confidence 222222 111 1112222222 234456675 5787777777888999999865 1 11122 222233467
Q ss_pred EEEEEcCCCCEEEEE
Q 010470 398 TSISLSRSGNIILTS 412 (510)
Q Consensus 398 ~~i~~~~~~~~l~~~ 412 (510)
..+.+.++|.+.+.+
T Consensus 327 d~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 327 TDISVDSKGGLWFMS 341 (381)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred CeEEECCCCeEEEEE
Confidence 777777766654444
No 445
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=87.26 E-value=6.8 Score=31.16 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010470 90 ESLITSLQEELTQIRDEC 107 (510)
Q Consensus 90 ~~~i~~l~~~l~~l~~~~ 107 (510)
..+|+.|..|+..+.+++
T Consensus 19 d~LV~~L~~En~~L~~ql 36 (190)
T 4emc_A 19 DLLVANLVNENFVLSEKL 36 (190)
T ss_dssp -CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 446
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=86.90 E-value=5.9 Score=27.39 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010470 132 RAQLEEMTMKAKNAEAENKMLV 153 (510)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~ 153 (510)
-..+.+++.+++.+..+|..+.
T Consensus 64 ~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666655555443
No 447
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=86.84 E-value=6.3 Score=27.67 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 95 SLQEELTQIRDECSQLKTELEEKIKAL 121 (510)
Q Consensus 95 ~l~~~l~~l~~~~~~l~~~l~~~~~~~ 121 (510)
+++.++.+.+..+.....+++.+.++.
T Consensus 39 eLQ~Ei~~~E~QL~iArQKLkdAe~~~ 65 (107)
T 2k48_A 39 ELQENITAHEQQLVTARQKLKDAEKAV 65 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444433444444443333
No 448
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=86.73 E-value=31 Score=35.50 Aligned_cols=147 Identities=12% Similarity=0.115 Sum_probs=78.0
Q ss_pred ccceeEEEEecCC-CEEEEEeCCCeEEEEEcCCCCeeEeecCC-------CCceEEEEEecCCCCEEEEEeCCCc----E
Q 010470 267 LGSVLDLAITHDN-RSVIAASSSNNLYVWDVNSGRVRHTLTGH-------TDKVCAVDVSKISSRHVVSAAYDRT----L 334 (510)
Q Consensus 267 ~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~~l~s~~~dg~----i 334 (510)
.+.|.+|+++|.+ ..+++++..+.|...+ +.|+.-..+..+ ...+.++++.|.+.+.++.+..... -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 4689999999863 5667777777776655 445433333221 2469999998855555555542211 2
Q ss_pred EEE-ECCCCeEeeeeeec----------CceeEEEEcCC-CCEEEEecCCCcEEEEECCCCceeeeecc-----cccccE
Q 010470 335 KVW-DLHKGYCVNTIIFH----------SNCNALAFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEVAA-----HSLAAV 397 (510)
Q Consensus 335 ~iw-d~~~~~~~~~~~~~----------~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~i 397 (510)
.|| ....|+.-..+... ..+..++++|. ...++++...+.|.. ....|+.-..+.. .....+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCCe
Confidence 233 23334322222211 12456888874 456666664444432 2223333222221 111457
Q ss_pred EEEEEcCC-CCEEEEEecC
Q 010470 398 TSISLSRS-GNIILTSGRD 415 (510)
Q Consensus 398 ~~i~~~~~-~~~l~~~~~d 415 (510)
..+.++|. +..++++..+
T Consensus 172 ~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEECTTSTTCEEEEESS
T ss_pred EEEEECCCCCCEEEEEEcC
Confidence 88999884 4466666554
No 449
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=86.68 E-value=27 Score=36.80 Aligned_cols=37 Identities=14% Similarity=0.218 Sum_probs=31.9
Q ss_pred eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeec
Q 010470 354 CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVA 390 (510)
Q Consensus 354 i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 390 (510)
+.+++..++..++++-+.|+++++|++.+++++....
T Consensus 238 ~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp EEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred EEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 5677777888899999999999999999998877653
No 450
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=86.66 E-value=7.5 Score=28.36 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=11.3
Q ss_pred ccHHHHHHHHHHHHHHHH
Q 010470 45 SEWKEKADNLETELQQCY 62 (510)
Q Consensus 45 ~~~~~~~~~l~~el~~~~ 62 (510)
..+..++..|+.+++.+.
T Consensus 5 ~~V~s~l~~LEaeyq~L~ 22 (119)
T 2avr_X 5 ASLVGELQALDAEYQNLA 22 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355666777777776543
No 451
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=86.64 E-value=7.7 Score=30.85 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010470 96 LQEELTQIRDECSQLKTE 113 (510)
Q Consensus 96 l~~~l~~l~~~~~~l~~~ 113 (510)
|.++++....+++.|+++
T Consensus 32 L~~ql~~k~~ei~~L~~q 49 (190)
T 4emc_A 32 LSEKLDTKATEIKQLQKQ 49 (190)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 452
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=86.42 E-value=7.2 Score=27.87 Aligned_cols=14 Identities=50% Similarity=0.650 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 010470 89 KESLITSLQEELTQ 102 (510)
Q Consensus 89 ~~~~i~~l~~~l~~ 102 (510)
+...+.++++++.+
T Consensus 43 Kq~~idelk~ei~q 56 (110)
T 2v4h_A 43 KQELIDKLKEEAEQ 56 (110)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 453
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=86.29 E-value=8.3 Score=28.50 Aligned_cols=16 Identities=13% Similarity=0.245 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 010470 116 EKIKALELVVSENQQI 131 (510)
Q Consensus 116 ~~~~~~~~l~~e~~~l 131 (510)
.+.-+++.|+.+.+.+
T Consensus 65 ~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 65 QAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333444444433
No 454
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=85.95 E-value=5.6 Score=26.15 Aligned_cols=34 Identities=9% Similarity=0.163 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 111 KTELEEKIKALELVVSENQQIRAQLEEMTMKAKN 144 (510)
Q Consensus 111 ~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~ 144 (510)
-.+++++.-+.+.++.|..+++.....++.++..
T Consensus 36 I~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~e 69 (77)
T 2w83_C 36 IAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRE 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444443333
No 455
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=85.89 E-value=2 Score=23.23 Aligned_cols=28 Identities=21% Similarity=0.206 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 108 SQLKTELEEKIKALELVVSENQQIRAQL 135 (510)
Q Consensus 108 ~~l~~~l~~~~~~~~~l~~e~~~l~~~~ 135 (510)
.||+.+++++...+..|..|..+|+..+
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3455555555555555555555554433
No 456
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=85.76 E-value=19 Score=32.23 Aligned_cols=190 Identities=8% Similarity=0.076 Sum_probs=103.5
Q ss_pred cCCCEEEEEeCCCeEEEEEcCCC----CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEEC---C------CCe
Q 010470 277 HDNRSVIAASSSNNLYVWDVNSG----RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDL---H------KGY 343 (510)
Q Consensus 277 ~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~---~------~~~ 343 (510)
|+..++++.+.+|.|+--.+..- .....+.. .+.+..+.... ....++..+..|.++-+.. . .|.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~-t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMN-TKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEEC-CCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 56677889999999987765421 11112332 23444444444 4566777777888766654 2 233
Q ss_pred Eeeee---eecCceeEE-EEcC--CCCEEEEecCCCcEEEEECCC------CceeeeecccccccEEEEEEcCCCCEEEE
Q 010470 344 CVNTI---IFHSNCNAL-AFSM--DGQTIFSGHIDGNLRLWDIQT------GKLLSEVAAHSLAAVTSISLSRSGNIILT 411 (510)
Q Consensus 344 ~~~~~---~~~~~i~~i-~~~~--~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 411 (510)
++..+ .....|.++ .+.+ ++.+++..+.+|.++...+.. ++-+..+.......+..+........++.
T Consensus 81 ~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l 160 (323)
T 1wp5_A 81 HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFL 160 (323)
T ss_dssp EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEE
T ss_pred ChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEE
Confidence 22221 122335544 3332 266788999999999887632 11222222222245555555555667888
Q ss_pred EecCCcEEEEEcCCceee-------eEeecCCCeeecCceeEEEcCCCC-EEEEEcCCCeEEEEeCCC
Q 010470 412 SGRDNLHNLFDIRSLEVC-------GSLRATGNRVASNWSRSCISPDES-YVAAGSADGSVYIWSISK 471 (510)
Q Consensus 412 ~~~d~~i~i~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~ 471 (510)
.+.+|.+..|....-... ..+...... .+..+..-+++. .|++.+..|..+..++..
T Consensus 161 ~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d---~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 161 VTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGD---YIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTC---CEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCC---EEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 888998888877532211 111111111 112232223344 778888888888777654
No 457
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=85.74 E-value=2.3 Score=22.65 Aligned_cols=26 Identities=23% Similarity=0.255 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 108 SQLKTELEEKIKALELVVSENQQIRA 133 (510)
Q Consensus 108 ~~l~~~l~~~~~~~~~l~~e~~~l~~ 133 (510)
.+|+.+++++...+..|+.|...++.
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 45566666666666666666665554
No 458
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=85.69 E-value=7 Score=27.05 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 101 TQIRDECSQLKTELEEKIKALELVVSENQQIRAQLE 136 (510)
Q Consensus 101 ~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~ 136 (510)
..|+.+..+|..+++.+.+++..+..|++.++..++
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555556666555544
No 459
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=85.52 E-value=3.4 Score=23.25 Aligned_cols=35 Identities=11% Similarity=0.243 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 98 EELTQIRDECSQLKTELEEKIKALELVVSENQQIR 132 (510)
Q Consensus 98 ~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~ 132 (510)
+.+..++....+|+...+.+.+-+..|++|...+.
T Consensus 10 kkiarlkkdnlqlerdeqnlekiianlrdeiarle 44 (52)
T 3he5_B 10 KKIARLKKDNLQLERDEQNLEKIIANLRDEIARLE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444433
No 460
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=85.22 E-value=6.4 Score=26.23 Aligned_cols=37 Identities=11% Similarity=0.197 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 91 SLITSLQEELTQIRDECSQLKTELEEKIKALELVVSE 127 (510)
Q Consensus 91 ~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e 127 (510)
.++.+|+-.+..++.+..+.+.++.+...++..|+..
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~q 62 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQ 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3344466666666666666666666555444444433
No 461
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=85.09 E-value=2.2 Score=21.27 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 100 LTQIRDECSQLKTELEEKIKALEL 123 (510)
Q Consensus 100 l~~l~~~~~~l~~~l~~~~~~~~~ 123 (510)
++.++..+..|+.+++++.+.++.
T Consensus 3 wealekkcaalesklqalekklea 26 (31)
T 3ljm_A 3 WEALEKKCAALESKLQALEKKLEA 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544443
No 462
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=85.07 E-value=4.7 Score=30.42 Aligned_cols=33 Identities=21% Similarity=0.184 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 113 ELEEKIKALELVVSENQQIRAQLEEMTMKAKNA 145 (510)
Q Consensus 113 ~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~ 145 (510)
.++.....+..+..+++.+......++....++
T Consensus 74 dleasr~akk~~ea~la~l~~~~~~LeAE~aKL 106 (146)
T 2xnx_M 74 EQEINRNLLGNAKLELDQLSSEKEQLTIEKAKL 106 (146)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHH
Confidence 333333333334444444444444444333333
No 463
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=84.75 E-value=3.3 Score=22.46 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 108 SQLKTELEEKIKALELVVSENQQIRAQ 134 (510)
Q Consensus 108 ~~l~~~l~~~~~~~~~l~~e~~~l~~~ 134 (510)
.+|+.+++++...+..|+.|..+|+.-
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445555555555555555555555543
No 464
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=84.72 E-value=11 Score=28.43 Aligned_cols=20 Identities=10% Similarity=0.134 Sum_probs=7.7
Q ss_pred ccccccccHHHHHHHHHHHH
Q 010470 39 PIISQGSEWKEKADNLETEL 58 (510)
Q Consensus 39 ~~~~~~~~~~~~~~~l~~el 58 (510)
||..+..+..+.+..++...
T Consensus 28 PF~~Vk~EVq~sl~~l~~l~ 47 (130)
T 4dnd_A 28 PFFVVRGEVQKAVNTARGLY 47 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 44333334444444443333
No 465
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=84.49 E-value=7 Score=26.06 Aligned_cols=37 Identities=22% Similarity=0.201 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 83 KALLQEKESLITSLQEELTQIRDECSQLKTELEEKIK 119 (510)
Q Consensus 83 ~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~ 119 (510)
+-.+.+.+.+.......+....+++..|..+++....
T Consensus 32 r~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ 68 (81)
T 3qh9_A 32 KIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDA 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHH
Confidence 3333333443333444444444444444444444333
No 466
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=84.48 E-value=21 Score=31.65 Aligned_cols=223 Identities=9% Similarity=0.121 Sum_probs=115.6
Q ss_pred cCCCEEEEEeCCCeEEEEEcCCCCeeE---------eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEEC---C----
Q 010470 277 HDNRSVIAASSSNNLYVWDVNSGRVRH---------TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDL---H---- 340 (510)
Q Consensus 277 ~~~~~l~~~~~d~~i~iwd~~~~~~~~---------~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~---~---- 340 (510)
|+..++++.+.+|.|+--.+.+-+... .+.. .+.+..+.... ....++..+..|.++-+.. .
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~-~~~~ll~fT~~G~~~~~~~~elp~~~~ 78 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVAN-THDHILCFSSRGRVYSMKVYQLPEATR 78 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCCCCS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEEC-CCCEEEEEECCCEEEEEEhhHCcCCCC
Confidence 355678889999999877665422111 1222 23343443433 4556666677887666643 2
Q ss_pred --CCeEee---eeeecCceeEEEEc---CCCCEEEEecCCCcEEEEECCC-------CceeeeecccccccEEEEEEcCC
Q 010470 341 --KGYCVN---TIIFHSNCNALAFS---MDGQTIFSGHIDGNLRLWDIQT-------GKLLSEVAAHSLAAVTSISLSRS 405 (510)
Q Consensus 341 --~~~~~~---~~~~~~~i~~i~~~---~~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~~i~~i~~~~~ 405 (510)
.|.++. .+.....|.++... +++.+++..+.+|.++...+.. |.....+... ..+..+.....
T Consensus 79 ~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~--d~lv~~~~~~~ 156 (307)
T 1zi0_A 79 GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG--DELIGVDLTSG 156 (307)
T ss_dssp SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT--CCEEEEEEECT
T ss_pred CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC--CEEEEEEEeCC
Confidence 233222 12222345544332 3566788899999999887632 2122222222 45555555555
Q ss_pred CCEEEEEecCCcEEEEEcCCceee-------eEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc-----
Q 010470 406 GNIILTSGRDNLHNLFDIRSLEVC-------GSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD----- 473 (510)
Q Consensus 406 ~~~l~~~~~d~~i~i~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~----- 473 (510)
...++..+.+|.+..++...-... ..+..... ..+..+...+++..+++.+..|.++-.++....
T Consensus 157 ~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~---d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg 233 (307)
T 1zi0_A 157 EDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEG---DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRA 233 (307)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTT---CCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTT
T ss_pred CCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCC---CEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCC
Confidence 667888888898888876532211 11111111 112223333455678888889998888764321
Q ss_pred ----eeecccccCcCEEEEEEeCCCCcEEEeeCCCeE
Q 010470 474 ----IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVV 506 (510)
Q Consensus 474 ----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i 506 (510)
....+....+.+..+....+...++..+.+|.+
T Consensus 234 ~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ 270 (307)
T 1zi0_A 234 TKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTL 270 (307)
T ss_dssp SCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCE
T ss_pred CCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcE
Confidence 112222233555555444444445555566654
No 467
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=84.26 E-value=3 Score=22.11 Aligned_cols=26 Identities=12% Similarity=0.071 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 108 SQLKTELEEKIKALELVVSENQQIRA 133 (510)
Q Consensus 108 ~~l~~~l~~~~~~~~~l~~e~~~l~~ 133 (510)
.+|+.+++++...+..|+.|...++.
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45566666666666666666666554
No 468
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=84.05 E-value=9.7 Score=30.24 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 010470 48 KEKADNLETELQQCYK 63 (510)
Q Consensus 48 ~~~~~~l~~el~~~~k 63 (510)
.+-+.+|+..+++.+.
T Consensus 11 ~~~l~~Lq~~i~~l~~ 26 (174)
T 2p22_A 11 HEMLQNLQTVVNELYR 26 (174)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445556666666553
No 469
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=83.81 E-value=2.9 Score=21.13 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 92 LITSLQEELTQIRDECSQLKTELEEKIK 119 (510)
Q Consensus 92 ~i~~l~~~l~~l~~~~~~l~~~l~~~~~ 119 (510)
+|..+++++..++.++..|+-++.++.+
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 470
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=83.74 E-value=6.2 Score=24.88 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 89 KESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRA 133 (510)
Q Consensus 89 ~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~ 133 (510)
.+..|..+..++.+++.+......+++.+...+..|..|....+.
T Consensus 5 ~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRk 49 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRK 49 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345556666677777777766667777777766666666655443
No 471
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=83.71 E-value=8.4 Score=26.37 Aligned_cols=91 Identities=12% Similarity=0.192 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 46 EWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVV 125 (510)
Q Consensus 46 ~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~ 125 (510)
.+..+.....+.+-..-.+.....+.+...........+.+|+-...+...+.++.+-.++.+++..+.+++...+=-++
T Consensus 17 ~~~~~~~ri~~aig~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~e 96 (114)
T 2xzr_A 17 HIENEIARIKKLIGAIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIE 96 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHhhhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q ss_pred HHHHHHHHHHH
Q 010470 126 SENQQIRAQLE 136 (510)
Q Consensus 126 ~e~~~l~~~~~ 136 (510)
.|...++.-+.
T Consensus 97 ne~ar~kkl~~ 107 (114)
T 2xzr_A 97 NEIARIKKLIK 107 (114)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
No 472
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=83.44 E-value=8.6 Score=26.24 Aligned_cols=69 Identities=17% Similarity=0.193 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 45 SEWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTE 113 (510)
Q Consensus 45 ~~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~ 113 (510)
.++++++..++..+....+..-++..++.....++..++=.+++....+..+++.-..+...+.....+
T Consensus 2 ~s~e~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl~~ 70 (83)
T 2xdj_A 2 GSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSSG 70 (83)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred ccHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 473
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=83.44 E-value=5.6 Score=31.78 Aligned_cols=73 Identities=12% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 48 KEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKA 120 (510)
Q Consensus 48 ~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~ 120 (510)
.++..++++..++.+....++.+++...+.+++.+-..-.-.+..|..+.+++.+++.++...+.+.....+.
T Consensus 70 ~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em~K 142 (175)
T 3lay_A 70 TEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQ 142 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 474
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=82.77 E-value=12 Score=34.69 Aligned_cols=100 Identities=13% Similarity=0.144 Sum_probs=0.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Q 010470 43 QGSEWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECS-----QLKTELEEK 117 (510)
Q Consensus 43 ~~~~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~-----~l~~~l~~~ 117 (510)
........+..|+..|+++-..-++..+-+..+......-.+.....+..+.+..+++++...-++ .....+..+
T Consensus 89 ye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~~mle~~~~~~~~~~~~~~~~~i~~l 168 (461)
T 3ghg_B 89 QERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQLYIDETVNSNIPTNLRVL 168 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHTHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhccchhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 118 IKALELVVSENQQIRAQLEEMTMKA 142 (510)
Q Consensus 118 ~~~~~~l~~e~~~l~~~~~~~~~~~ 142 (510)
...++.+......|+..+..++..+
T Consensus 169 ~~~~~~~~~~i~~l~~~~~~~~~~c 193 (461)
T 3ghg_B 169 RSILENLRSKIQKLESDVSAQMEYC 193 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhc
No 475
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=82.46 E-value=11 Score=26.86 Aligned_cols=55 Identities=16% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 93 ITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEA 147 (510)
Q Consensus 93 i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~ 147 (510)
+..+++++.+.+.++.+|..++.+++...+.++.|+|=.=..+..++.-++....
T Consensus 6 ~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~~~ 60 (106)
T 4e61_A 6 LVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTTQD 60 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=82.27 E-value=30 Score=31.68 Aligned_cols=229 Identities=10% Similarity=0.082 Sum_probs=0.0
Q ss_pred cCCCEEEEEeCCCeEEEEEcCC---------CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEE---------
Q 010470 277 HDNRSVIAASSSNNLYVWDVNS---------GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD--------- 338 (510)
Q Consensus 277 ~~~~~l~~~~~d~~i~iwd~~~---------~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd--------- 338 (510)
|+..++++.+.+|.|+--.+.+ +..-..++ ..+.+..+.... ....++..+..|.++-+.
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~-t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVN-THDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEec-CCCEEEEEeCCCeEEEEEHHHCcCCCc
Q ss_pred CCCCeEeee---eeecCceeEEEEc---CCCCEEEEecCCCcEEEEECCC-----CceeeeecccccccEEEEEEcCCCC
Q 010470 339 LHKGYCVNT---IIFHSNCNALAFS---MDGQTIFSGHIDGNLRLWDIQT-----GKLLSEVAAHSLAAVTSISLSRSGN 407 (510)
Q Consensus 339 ~~~~~~~~~---~~~~~~i~~i~~~---~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~i~~i~~~~~~~ 407 (510)
...|..+.. +.....|.++... .++.+|+.++..|.++...+.. ..-+..+.......+..+.......
T Consensus 83 ~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~~ 162 (370)
T 3l6v_A 83 NARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDR 162 (370)
T ss_dssp TSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSCC
T ss_pred ccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCCc
Q ss_pred EEEEEecCCcEEEEEcC----CceeeeEeecCCCeeecCceeEEEcC---------------------------------
Q 010470 408 IILTSGRDNLHNLFDIR----SLEVCGSLRATGNRVASNWSRSCISP--------------------------------- 450 (510)
Q Consensus 408 ~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~~~~~~~~~~~~~s~--------------------------------- 450 (510)
.++..+.+|.+..|+.. .++...-...-.-.-...+..+...+
T Consensus 163 ~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~ 242 (370)
T 3l6v_A 163 DVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVAD 242 (370)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-------------------------------
T ss_pred eEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccccccccccccccccccccccccccc
Q ss_pred --CCCEEEEEcCCCeEEEEeCC---------CcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEE
Q 010470 451 --DESYVAAGSADGSVYIWSIS---------KADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVC 507 (510)
Q Consensus 451 --~~~~l~~~~~dg~i~iwd~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 507 (510)
++.+|++.+..|..+...+. .|-....+....+.+..+.+..+...++..+..|.+.
T Consensus 243 ~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~i 310 (370)
T 3l6v_A 243 NGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLV 310 (370)
T ss_dssp ----CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEE
T ss_pred ccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEE
No 477
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=82.15 E-value=5.1 Score=22.72 Aligned_cols=34 Identities=12% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 93 ITSLQEELTQIRDECSQLKTELEEKIKALELVVS 126 (510)
Q Consensus 93 i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~ 126 (510)
+.+|......++.+..+|++++..+.+++.+|+.
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
No 478
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=82.08 E-value=31 Score=31.77 Aligned_cols=275 Identities=11% Similarity=0.078 Sum_probs=0.0
Q ss_pred EEEecCCCEEEEeeCCCeEEEEeCCCC------------cceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 010470 231 ILFEYNSARLISGGQDKSIKLWDTNTG------------SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS 298 (510)
Q Consensus 231 ~~~s~~~~~l~s~~~dg~i~iwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 298 (510)
+.++......+.-..||.|..|-.+.. .+...-......+..++++.-....++...||.|+.|-...
T Consensus 56 ~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~ 135 (389)
T 3kci_A 56 VQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAE 135 (389)
T ss_dssp EEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCG
T ss_pred EEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCC
Q ss_pred ------------CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC-------------CeEeeeeeecCc
Q 010470 299 ------------GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK-------------GYCVNTIIFHSN 353 (510)
Q Consensus 299 ------------~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-------------~~~~~~~~~~~~ 353 (510)
..+...-......|..++. ...+.+....+|.|+.|-... ............
T Consensus 136 ~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~---G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~ 212 (389)
T 3kci_A 136 DGKLGHGNRSPCDRPRVIESLRGIEVVDVAA---GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHR 212 (389)
T ss_dssp GGTTCSSSCCCEEEEEECGGGTTSCEEEEEE---CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSC
T ss_pred CCcCCCCCCccCcCCeEecccCCCeEEEEEe---CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCe
Q ss_pred eeEEEEcCCCCEEEEecCCCcEEEEECC---------CCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC
Q 010470 354 CNALAFSMDGQTIFSGHIDGNLRLWDIQ---------TGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR 424 (510)
Q Consensus 354 i~~i~~~~~~~~l~~~~~dg~i~i~d~~---------~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~ 424 (510)
+..++......+.++-..+|.|+.|-.. ..................+.+.....+.++-..+|.|+.|-..
T Consensus 213 v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n 292 (389)
T 3kci_A 213 VVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKG 292 (389)
T ss_dssp EEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred EEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCC
Q ss_pred CceeeeEeecCCCeeecCce------eEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCC--c
Q 010470 425 SLEVCGSLRATGNRVASNWS------RSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGK--P 496 (510)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~------~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~ 496 (510)
..-.+..-..........+. .+.++......++-..||.|+.|-....-.+..-...........-...+. .
T Consensus 293 ~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~v~ 372 (389)
T 3kci_A 293 DYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVN 372 (389)
T ss_dssp GGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCCC
T ss_pred CCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEecccCCCCEE
Q ss_pred EEEeeCCCeEEE
Q 010470 497 LASADKNGVVCV 508 (510)
Q Consensus 497 l~s~~~dg~i~i 508 (510)
-++|+.+.++.+
T Consensus 373 ~va~G~~ht~al 384 (389)
T 3kci_A 373 RVACGSAHTLAW 384 (389)
T ss_dssp EEEEETTEEEEE
T ss_pred EEEecCCcEEEE
No 479
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=81.75 E-value=7.5 Score=26.17 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 95 SLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAE 148 (510)
Q Consensus 95 ~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~ 148 (510)
++.+.+..|+.++.-.+.-++++...+.....+.+.++.++..+..+++..+..
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~~ 64 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRST 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
No 480
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=81.73 E-value=9.3 Score=25.43 Aligned_cols=64 Identities=14% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 57 ELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITS-----LQEELTQIRDECSQLKTELEEKIKA 120 (510)
Q Consensus 57 el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-----l~~~l~~l~~~~~~l~~~l~~~~~~ 120 (510)
.|.++++.......+|...++.++...+.+......++. .+.++..++..+.+|+.++..+...
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~va~ 74 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIAA 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 481
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=81.67 E-value=3.1 Score=22.28 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 105 DECSQLKTELEEKIKALELVVSENQQIRA 133 (510)
Q Consensus 105 ~~~~~l~~~l~~~~~~~~~l~~e~~~l~~ 133 (510)
++..+|+.+++++...+..|..|...++.
T Consensus 1 eRMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 1 XRMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHccHHHHHHHHHHHH
No 482
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=81.55 E-value=6.9 Score=38.01 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=0.0
Q ss_pred CceeEEEEcCCCCEEE-EecCCC-----------cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEE
Q 010470 352 SNCNALAFSMDGQTIF-SGHIDG-----------NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTS 412 (510)
Q Consensus 352 ~~i~~i~~~~~~~~l~-~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 412 (510)
..+..+.|.++|.+.+ +-...+ .|+.++..+++....+.......++.++|+||++.|+++
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
No 483
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=81.39 E-value=4.7 Score=24.78 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 98 EELTQIRDECSQLKTELEEKIKALELVVSEN 128 (510)
Q Consensus 98 ~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~ 128 (510)
.+++.|+.++.+|+.+++++.++++.++.+.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=81.35 E-value=6.9 Score=23.73 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 104 RDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNA 145 (510)
Q Consensus 104 ~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~ 145 (510)
+.+..+|..++..+...+..|.......+.++..+.+.++.+
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 485
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=81.34 E-value=4.2 Score=21.65 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 109 QLKTELEEKIKALELVVSENQQIRA 133 (510)
Q Consensus 109 ~l~~~l~~~~~~~~~l~~e~~~l~~ 133 (510)
+|+.+++++...+..|+.|...|+.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
No 486
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=81.31 E-value=2.2 Score=41.84 Aligned_cols=126 Identities=10% Similarity=0.100 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 46 EWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVV 125 (510)
Q Consensus 46 ~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~ 125 (510)
..+.+...++..|.+.........+.|.+..+....+....+..+.+...|.+.-.+++++...|+.+-....++.+.|.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~ 411 (575)
T 2i1j_A 332 RAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLE 411 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------------------------------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 010470 126 SENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEAN 171 (510)
Q Consensus 126 ~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (510)
.+...+...+..+....+.-+.+...+.......+....+...+..
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l~ 457 (575)
T 2i1j_A 412 DEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALL 457 (575)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=80.92 E-value=11 Score=25.73 Aligned_cols=62 Identities=10% Similarity=0.205 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 68 LSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQ 129 (510)
Q Consensus 68 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~ 129 (510)
+.+++..............-+....+..++.++..|+-.+.++..+++.+.+.-..+-.+.|
T Consensus 4 ~e~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 4 VEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=80.86 E-value=20 Score=28.64 Aligned_cols=61 Identities=13% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 76 VAESRSSKALLQEKESLITSLQEELTQIRDECSQLK-------TELEEKIKALELVVSENQQIRAQLE 136 (510)
Q Consensus 76 ~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~-------~~l~~~~~~~~~l~~e~~~l~~~~~ 136 (510)
.++..+++++.++......++++++...+.++..|. .+++++.+++..++.+....+.++.
T Consensus 70 ~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~ 137 (175)
T 3lay_A 70 TEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRD 137 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=80.80 E-value=37 Score=31.80 Aligned_cols=101 Identities=15% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 47 WKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEEL-TQIRDECSQLKTELEEKIKALELVV 125 (510)
Q Consensus 47 ~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l-~~l~~~~~~l~~~l~~~~~~~~~l~ 125 (510)
.+.++...|.||...+++-.+..+.-.....+.+.-...+++-...|.+...+- .+++.++.+-.+.+++-.+++..-.
T Consensus 7 yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~AeY~ 86 (497)
T 3iox_A 7 YQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLADYP 86 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010470 126 SENQQIRAQLEEMTMKAKNAEA 147 (510)
Q Consensus 126 ~e~~~l~~~~~~~~~~~~~~~~ 147 (510)
.++.+-..........+.+++.
T Consensus 87 ~kl~aYe~~~~~~~k~lae~ek 108 (497)
T 3iox_A 87 VKLKAYEDEQTSIKAALAELEK 108 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
No 490
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=80.75 E-value=12 Score=26.02 Aligned_cols=78 Identities=14% Similarity=0.217 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 66 SRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAK 143 (510)
Q Consensus 66 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~ 143 (510)
......+.........++..+...+....++.....++..+...|..++..+......|......+...+..++..++
T Consensus 10 ~~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 10 ARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 491
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=80.70 E-value=8.9 Score=27.37 Aligned_cols=72 Identities=14% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 58 LQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITS-----LQEELTQIRDECSQLKTELEEKIKALELVVSENQ 129 (510)
Q Consensus 58 l~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-----l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~ 129 (510)
|.++++.......+|...++.++...+.+......++. .+.++..++..+.+|+.++......-.......|
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va~~k~~~k~~D 100 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRIATGKNLGKEQD 100 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC
No 492
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=80.67 E-value=10 Score=25.30 Aligned_cols=64 Identities=14% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 83 KALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAE 146 (510)
Q Consensus 83 ~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~ 146 (510)
.++.......+...+.+++.++..-.+|..--..+..-+..+..|.+.+...++.+..+.+.++
T Consensus 10 DKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 10 DKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=80.52 E-value=9 Score=24.53 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 81 SSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVS 126 (510)
Q Consensus 81 ~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~ 126 (510)
...+..+.+.....++..++..++.+..+|..++..+..++..|+.
T Consensus 13 AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 13 AATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=80.35 E-value=14 Score=26.66 Aligned_cols=96 Identities=11% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 57 ELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEEL----TQIRDECSQLKTELEEKIKALELVVSENQQIR 132 (510)
Q Consensus 57 el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l----~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~ 132 (510)
+-.++.+..++...+|...+.....+.+...+++..+.+++.+- ..-...+..+..++.+....+..++..++...
T Consensus 2 eHi~LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~ 81 (107)
T 2no2_A 2 SHADLLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSA 81 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010470 133 AQLEEMTMKAKNAEAENKML 152 (510)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~ 152 (510)
..-..+...+..+..+...+
T Consensus 82 ~~~~~l~~~~~~l~~Ek~~L 101 (107)
T 2no2_A 82 QSEANWAAEFAELEKERDSL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 495
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=80.10 E-value=4.3 Score=20.53 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 106 ECSQLKTELEEKIKALELVVSENQQIRAQL 135 (510)
Q Consensus 106 ~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~ 135 (510)
++..|+.++.++.+++..|+.|...++.-+
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkqgy 32 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQGY 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccc
No 496
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=79.87 E-value=19 Score=27.92 Aligned_cols=80 Identities=16% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 59 QQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEM 138 (510)
Q Consensus 59 ~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~ 138 (510)
.++.+....+.+......+....+.+.+.+....+..|..-...++..+.+.+..+++-++....+..-+..|++.++.|
T Consensus 68 ~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~sL 147 (152)
T 4fla_A 68 EAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSL 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 497
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=79.67 E-value=14 Score=26.15 Aligned_cols=66 Identities=15% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 75 EVAESRSSKALLQEKESLITSLQEELTQIRDECSQ---------------------LKTELEEKIKALELVVSENQQIRA 133 (510)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~---------------------l~~~l~~~~~~~~~l~~e~~~l~~ 133 (510)
..+....+++.+.+++.+...|.++++.|+.++.+ .-...++..+.++.|+.|.+.|+.
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~ 89 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRG 89 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 010470 134 QLEEMTM 140 (510)
Q Consensus 134 ~~~~~~~ 140 (510)
.+..++.
T Consensus 90 ~v~~lEe 96 (100)
T 1go4_E 90 LLRAMER 96 (100)
T ss_dssp HHTTCC-
T ss_pred HHHHHhc
No 498
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=79.60 E-value=26 Score=29.21 Aligned_cols=76 Identities=16% Similarity=0.096 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 65 QSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTM 140 (510)
Q Consensus 65 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~ 140 (510)
...+..+.......+..+.=...-...+|.++...+++|......+..++..+.+.-..|..++..+...++++++
T Consensus 151 l~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qE 226 (242)
T 3uux_B 151 PSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEE 226 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
No 499
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=79.48 E-value=56 Score=33.03 Aligned_cols=152 Identities=15% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 48 KEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSE 127 (510)
Q Consensus 48 ~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e 127 (510)
++....++++..+ +.++.++..|......+.+..++.+-+++.+-...+..-+..-+.....+...-+...+.+..+..
T Consensus 669 qEa~Ar~~A~~~e-Qea~g~Lerqki~d~a~aE~~r~~Llel~a~s~aves~g~a~AeA~a~aea~~Ie~ea~v~~a~l~ 747 (861)
T 2zuo_A 669 QEAAAKHEAQRLE-QEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLK 747 (861)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhcchhHHHHHHHHHHHHHhhHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhhhcchHHhhhhcCCceEEe
Q 010470 128 NQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEAN-ALYEDMIDRLKASGLEKLAKQQVDGVVRR 200 (510)
Q Consensus 128 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 200 (510)
-.+++.+.+..-+.++...+.+..............+..+.+.. ..++.+++.+.+..+..++...++-..+.
T Consensus 748 a~a~~i~~~ael~~~~~~~~~el~~~~~~~ele~~k~~~la~ie~~kf~~~v~aig~~ti~~ia~Agpe~q~kl 821 (861)
T 2zuo_A 748 AQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVKL 821 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTHHHHTGGGCC------
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHhcChHHHHHH
No 500
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=79.21 E-value=8.8 Score=23.62 Aligned_cols=49 Identities=6% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470 98 EELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAE 146 (510)
Q Consensus 98 ~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~ 146 (510)
+++-+++..+...+.+++.+++.+..+.+|...++..+..++.+...++
T Consensus 13 qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 13 QEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Done!