BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010471
(510 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 158 bits (400), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 99/313 (31%), Positives = 177/313 (56%), Gaps = 7/313 (2%)
Query: 202 LVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAG 261
+V RLR +L+S++L Q+V FFD G L +RL++D L + +++ LR Q +
Sbjct: 124 IVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASV 183
Query: 262 AFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMR 321
+ +S L L + +SII +YG+Y ++ + +TQ+ A A +A+E + +R
Sbjct: 184 GISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVR 243
Query: 322 TVRVYGTEEKELGRYKIWLEKLAFIRIRESMAY-GLWNMSFITLYRSTQVMAVLL-GGMS 379
TVR +G E E+ +Y ++ + + +E+ A G + + L + V++VL GG+
Sbjct: 244 TVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGAT--GLSGNLIVLSVLYKGGLL 301
Query: 380 IMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE 439
+ ++ +L+ +++Y W+ + + S L++ +GA ++++L++ P F +E
Sbjct: 302 MGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPF-NE 360
Query: 440 GVKL--QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 497
GV L + G ++F N+ F YP+RP VPI L+I + V A+VG SGSGKST ++L
Sbjct: 361 GVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSL 420
Query: 498 LLRLYEPSDGQVC 510
LLRLY+P+ G +
Sbjct: 421 LLRLYDPASGTIS 433
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/313 (31%), Positives = 177/313 (56%), Gaps = 7/313 (2%)
Query: 202 LVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAG 261
+V RLR +L+S++L Q+V FFD G L +RL++D L + +++ LR Q +
Sbjct: 93 IVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASV 152
Query: 262 AFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMR 321
+ +S L L + +SII +YG+Y ++ + +TQ+ A A +A+E + +R
Sbjct: 153 GISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVR 212
Query: 322 TVRVYGTEEKELGRYKIWLEKLAFIRIRESMAY-GLWNMSFITLYRSTQVMAVLL-GGMS 379
TVR +G E E+ +Y ++ + + +E+ A G + + L + V++VL GG+
Sbjct: 213 TVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGAT--GLSGNLIVLSVLYKGGLL 270
Query: 380 IMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE 439
+ ++ +L+ +++Y W+ + + S L++ +GA ++++L++ P F +E
Sbjct: 271 MGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPF-NE 329
Query: 440 GVKL--QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 497
GV L + G ++F N+ F YP+RP VPI L+I + V A+VG SGSGKST ++L
Sbjct: 330 GVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSL 389
Query: 498 LLRLYEPSDGQVC 510
LLRLY+P+ G +
Sbjct: 390 LLRLYDPASGTIS 402
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 149 bits (375), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 45/352 (12%)
Query: 187 FSGLRSGCFSIANIVL----------VKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTA 236
++G+ +G +A I + + ++R+ + A++ Q++ +FD VG L +RLT
Sbjct: 114 YTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTD 173
Query: 237 DCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQK 296
D +++ IG+ I M + G FI T W LTL L I L + ++ +
Sbjct: 174 DVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILS 233
Query: 297 RASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKL------------- 343
+ A A VA+E L +RTV +G ++KEL RY LE+
Sbjct: 234 SFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANI 293
Query: 344 ----AFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 399
AF+ I S A W + + + + + VL S++IG S Q +
Sbjct: 294 SMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASP------- 346
Query: 400 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS-NQFLSEGVKLQRLMGHVQFVNISFH 458
N+ + + GA +VF++ID PS + F G K + G+++F NI F
Sbjct: 347 ----------NIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFS 396
Query: 459 YPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510
YPSR V IL + L +++ + VA+VG SG GKST V L+ RLY+P DG V
Sbjct: 397 YPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS 448
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 100/370 (27%), Positives = 175/370 (47%), Gaps = 46/370 (12%)
Query: 163 QREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFF 222
QR+ + +F S ++L + S I L+ F A +L KRLR ++ ++L QDV +F
Sbjct: 744 QRQNSNLF---SLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWF 800
Query: 223 D--TEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQ-GAGAFINLLTLSWPLTLSALL 279
D G LT+RL D ++ G+ + +I +N G G I+L+ W LTL L
Sbjct: 801 DDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLI-YGWQLTLLLLA 859
Query: 280 ICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGR---- 335
I ++I V + ++ ++ + +A E + RTV V T E++
Sbjct: 860 IVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTV-VSLTREQKFETMYAQ 918
Query: 336 -----YKIWLEKLAFIRIRESMAYGLWNMSFITLYR------STQVMA---VLLGGMSIM 381
Y+ ++K I S + S+ +R + Q+M VLL +I+
Sbjct: 919 SLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIV 978
Query: 382 IGQVSPEQLTKYV-LYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS-NQFLSE 439
G ++ Q++ + Y + + A+ + ++I+ P + + ++
Sbjct: 979 FGAMAVGQVSSFAPDYAKATVSAS------------------HIIRIIEKTPEIDSYSTQ 1020
Query: 440 GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 499
G+K L G+VQF + F+YP+RP++P+L + L ++ + +A+VG SG GKST V LL
Sbjct: 1021 GLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE 1080
Query: 500 RLYEPSDGQV 509
R Y+P G V
Sbjct: 1081 RFYDPMAGSV 1090
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 149 bits (375), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 45/352 (12%)
Query: 187 FSGLRSGCFSIANIVL----------VKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTA 236
++G+ +G +A I + + ++R+ + A++ Q++ +FD VG L +RLT
Sbjct: 114 YTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTD 173
Query: 237 DCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQK 296
D +++ IG+ I M + G FI T W LTL L I L + ++ +
Sbjct: 174 DVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILS 233
Query: 297 RASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKL------------- 343
+ A A VA+E L +RTV +G ++KEL RY LE+
Sbjct: 234 SFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANI 293
Query: 344 ----AFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 399
AF+ I S A W + + + + + VL S++IG S Q +
Sbjct: 294 SMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASP------- 346
Query: 400 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS-NQFLSEGVKLQRLMGHVQFVNISFH 458
N+ + + GA +VF++ID PS + F G K + G+++F NI F
Sbjct: 347 ----------NIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFS 396
Query: 459 YPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510
YPSR V IL + L +++ + VA+VG SG GKST V L+ RLY+P DG V
Sbjct: 397 YPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS 448
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 100/370 (27%), Positives = 175/370 (47%), Gaps = 46/370 (12%)
Query: 163 QREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFF 222
QR+ + +F S ++L + S I L+ F A +L KRLR ++ ++L QDV +F
Sbjct: 744 QRQNSNLF---SLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWF 800
Query: 223 D--TEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQ-GAGAFINLLTLSWPLTLSALL 279
D G LT+RL D ++ G+ + +I +N G G I+L+ W LTL L
Sbjct: 801 DDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLI-YGWQLTLLLLA 859
Query: 280 ICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGR---- 335
I ++I V + ++ ++ + +A E + RTV V T E++
Sbjct: 860 IVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTV-VSLTREQKFETMYAQ 918
Query: 336 -----YKIWLEKLAFIRIRESMAYGLWNMSFITLYR------STQVMA---VLLGGMSIM 381
Y+ ++K I S + S+ +R + Q+M VLL +I+
Sbjct: 919 SLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFENVLLVFSAIV 978
Query: 382 IGQVSPEQLTKYV-LYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS-NQFLSE 439
G ++ Q++ + Y + + A+ + ++I+ P + + ++
Sbjct: 979 FGAMAVGQVSSFAPDYAKATVSAS------------------HIIRIIEKTPEIDSYSTQ 1020
Query: 440 GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 499
G+K L G+VQF + F+YP+RP++P+L + L ++ + +A+VG SG GKST V LL
Sbjct: 1021 GLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE 1080
Query: 500 RLYEPSDGQV 509
R Y+P G V
Sbjct: 1081 RFYDPMAGSV 1090
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 91/354 (25%), Positives = 163/354 (46%), Gaps = 51/354 (14%)
Query: 180 LCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQ 239
L + GI S + S C S + +V +R L+ ++ V FFD ++ G L SR+T D +
Sbjct: 74 LMILRGITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSE 133
Query: 240 RLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRAS 299
++++ + ++R G FI + SW L++ +++ +SI + V + + S
Sbjct: 134 QVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVSKRFRNIS 193
Query: 300 VLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRY-----KIWLEKLAFIRIRE---- 350
Q A++ L + V ++G +E E R+ ++ L+ + +
Sbjct: 194 KNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQGMKMVSASSISDP 253
Query: 351 --------SMAYGLWNMSFITLYRSTQVMAVLLGG-----MSIMIGQVSPEQLTKYVLYC 397
++A+ L+ SF VM L G S MI + P
Sbjct: 254 IIQLIASLALAFVLYAASF------PSVMDSLTAGTITVVFSSMIALMRP---------- 297
Query: 398 EWLIYATWRMVDNLSSLLQ-SIGATEKVFQLIDLLPSNQFLSEGVK-LQRLMGHVQFVNI 455
+ + N+++ Q + A + +F ++D S Q EG + ++R G V+F N+
Sbjct: 298 -------LKSLTNVNAQFQRGMAACQTLFTILD---SEQEKDEGKRVIERATGDVEFRNV 347
Query: 456 SFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
+F YP R VP L ++ L I A + VA+VG SGSGKST +L+ R Y+ +G++
Sbjct: 348 TFTYPGRD-VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEI 400
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 105 bits (261), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 72/309 (23%), Positives = 143/309 (46%), Gaps = 3/309 (0%)
Query: 202 LVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAG 261
+V RLR+ L+ L V FFD G + SR+ D ++NV+GN I + AG
Sbjct: 108 VVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAG 167
Query: 262 AFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMR 321
A I + ++ L+L L I +I + ++ Q N + +E + +
Sbjct: 168 AVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLT 227
Query: 322 TVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIM 381
++++ EEKE+ ++ E L + + + G+ + + GG +
Sbjct: 228 VIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLAL 287
Query: 382 IGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGV 441
++ + ++ Y + + + + ++ + E++F+++D L + + V
Sbjct: 288 KDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILD-LEEEKDDPDAV 346
Query: 442 KLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501
+L+ + G ++F N+ F Y + P+L + I+ + VA+VG +GSGK+T VNLL+R
Sbjct: 347 ELREVRGEIEFKNVWFSYDKKK--PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF 404
Query: 502 YEPSDGQVC 510
Y+ GQ+
Sbjct: 405 YDVDRGQIL 413
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 105 bits (261), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 90/341 (26%), Positives = 159/341 (46%), Gaps = 14/341 (4%)
Query: 176 FLVL-LCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRL 234
F++L L G+ S C S + +V ++R L++ + V FFD E+ GGL SR+
Sbjct: 69 FMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRI 128
Query: 235 TADCQRLSNVIGNDINMILRNSLQGAGAFINLLTL----SWPLTLSALLICSFLSIIVSV 290
T D ++++ + I+R +GA + I LLTL SW L+L +++ ++ +S
Sbjct: 129 TYDSEQVAGATSRALVSIVR---EGA-SIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISF 184
Query: 291 YGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRE 350
+ ++ S Q H + A++ L + V YG +E E R+ + ++
Sbjct: 185 VSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKL 244
Query: 351 SMAYGLWNMSFITLYRSTQVMAVL-LGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVD 409
A + + I + S + AVL L + + +++P T L+ +
Sbjct: 245 VSAQSIAD-PVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTS 303
Query: 410 NLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILN 469
S + + A + +F L+DL + + +R+ G V +++F Y + P L+
Sbjct: 304 VTSEFQRGMAACQTLFGLMDLETERD--NGKYEAERVNGEVDVKDVTFTYQGKEK-PALS 360
Query: 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510
HV +I + VA+VG SGSGKST NL R Y+ G +C
Sbjct: 361 HVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC 401
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/372 (25%), Positives = 168/372 (45%), Gaps = 59/372 (15%)
Query: 170 FHKSSRFLVL--------LCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYF 221
F K+ R ++L L + GI S + S C S + +V +R L+ ++ V F
Sbjct: 56 FGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAF 115
Query: 222 FDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLIC 281
FD ++ G L SR+T D +++++ + ++R G FI + SW L++ +++
Sbjct: 116 FDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLA 175
Query: 282 SFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRY----- 336
+SI + V + + S Q A++ L + V ++G +E E R+
Sbjct: 176 PIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSN 235
Query: 337 KIWLEKLAFIRIRE------------SMAYGLWNMSFITLYRSTQVMAVLLGG-----MS 379
K+ L+ + + ++A+ L+ SF VM L G S
Sbjct: 236 KMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASF------PSVMDSLTAGTITVVFS 289
Query: 380 IMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQ-SIGATEKVFQLIDLLPSNQFLS 438
MI + P + + N+++ Q + A + +F ++D S Q
Sbjct: 290 SMIALMRP-----------------LKSLTNVNAQFQRGMAACQTLFAILD---SEQEKD 329
Query: 439 EGVK-LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 497
EG + + R G ++F N++F YP R VP L ++ L I A + VA+VG SGSGKST +L
Sbjct: 330 EGKRVIDRATGDLEFRNVTFTYPGRE-VPALRNINLKIPAGKTVALVGRSGSGKSTIASL 388
Query: 498 LLRLYEPSDGQV 509
+ R Y+ +G +
Sbjct: 389 ITRFYDIDEGHI 400
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 144/315 (45%), Gaps = 19/315 (6%)
Query: 205 RLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFI 264
RLR ++L Q++ +FDT G L ++L + +R+ G+ I M + Q FI
Sbjct: 170 RLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFI 229
Query: 265 NLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVR 324
T SW LTL L + ++ + ++ A A V +ET+ +RTV
Sbjct: 230 VAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVV 289
Query: 325 VYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQ 384
EL RY +E+ + + + G+ SF + S + L I +G
Sbjct: 290 SLNGLRYELERYSTAVEEAKKAGVLKGLFLGI---SFGAMQASNFISFAL--AFYIGVGW 344
Query: 385 VSPEQLTKYVLYCEWLIYATWRMVDN---------LSSLLQSIGATEKVFQLIDLLPSNQ 435
V L + + L + M+ + L+ L + GA +++++D P
Sbjct: 345 VHDGSLN----FGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVID 400
Query: 436 FLSE-GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTF 494
S+ G K ++ G + N+ F YPSRP VPIL + L + A + VA+VG SG GKST
Sbjct: 401 SSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTI 460
Query: 495 VNLLLRLYEPSDGQV 509
++LLLR Y+ G++
Sbjct: 461 ISLLLRYYDVLKGKI 475
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 94/355 (26%), Positives = 155/355 (43%), Gaps = 39/355 (10%)
Query: 176 FLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDT--EAVGGLTSR 233
FLVL GI S L + IA+ L + LR L+ +L Q + FFD+ A G +++R
Sbjct: 800 FLVL-AAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTR 858
Query: 234 LTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQ 293
L D L I + ++ + W + ALLI + L I+ +GQ
Sbjct: 859 LATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQM---ALLIIAILPIVA--FGQ 913
Query: 294 YQKR-----ASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKL----- 343
Y + +V + A + +A E + +RTV+ E+ Y+ + EKL
Sbjct: 914 YLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDT---FYENFCEKLDIPHK 970
Query: 344 -----AFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCE 398
AFI + ++YG + L M G++++I P VL
Sbjct: 971 EAIKEAFI---QGLSYGCASSVLYLLNTCAYRM-----GLALIITD-PPTMQPMRVLRVM 1021
Query: 399 WLIYATWRMVDNLSSLL----QSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVN 454
+ I + + +S ++ A +F ++ + LS + ++L G V F N
Sbjct: 1022 YAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKN 1081
Query: 455 ISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
+ F YP RP + IL + ++E + +A+VG SG GKST V LL R Y+ G++
Sbjct: 1082 VRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEI 1136
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 144/312 (46%), Gaps = 15/312 (4%)
Query: 206 LRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFIN 265
+R+ LY+ L F+ VG + SR+ D ++ + I + I + + A
Sbjct: 96 IRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSI 155
Query: 266 LLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRV 325
+ L LTL+AL I F + V V+ ++ + + A E + + V+
Sbjct: 156 MFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKS 215
Query: 326 YGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNM-SFITLYRSTQVMAVLLGGMSIMI-- 382
+ E+ E + +K + ++ + WN SF + T + +++ G+ +
Sbjct: 216 FAIEDNEAKNF----DKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAI 271
Query: 383 -GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGV 441
G ++ L +V Y E L R+V + ++L QS + ++VFQLID + + GV
Sbjct: 272 SGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID---EDYDIKNGV 328
Query: 442 KLQRL---MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL 498
Q + G + ++SF Y PIL + L+IE E VA VG+SG GKST +NL+
Sbjct: 329 GAQPIEIKQGRIDIDHVSFQYNDNEA-PILKDINLSIEKGETVAFVGMSGGGKSTLINLI 387
Query: 499 LRLYEPSDGQVC 510
R Y+ + GQ+
Sbjct: 388 PRFYDVTSGQIL 399
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 88.2 bits (217), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 92/374 (24%), Positives = 175/374 (46%), Gaps = 24/374 (6%)
Query: 148 EITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCF-SIANIVLVKRL 206
+++ P +LA V + L+L+ G G+ F S A+ L
Sbjct: 39 DLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIGCTVFASYASQNFGADL 98
Query: 207 RETLYSALL---FQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAF 263
R L+ +L +V F T + L +RLT D +L N++ + +++R L G
Sbjct: 99 RRDLFRKVLSFSISNVNRFHTSS---LITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGI 155
Query: 264 INLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVL---TQECNAHANNVAQETLCMM 320
+ + +S + LS++LI + IV ++ K+ + L QE N V +E L +
Sbjct: 156 V--MAVSINVKLSSVLIF-LIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGV 212
Query: 321 RTVRVYGTEEKELGRYKIWLEKLAFIRIRESM--AYGLWNMS---FITLYRSTQVMAVLL 375
R VR + EE E ++ E L R S+ A+ L + FI + + +
Sbjct: 213 RVVRAFRREEYENENFRKANESL-----RRSIISAFSLIVFALPLFIFIVNMGMIAVLWF 267
Query: 376 GGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ 435
GG+ + Q+ + Y Y ++++ + + L+ ++++ + ++V ++++ P+ +
Sbjct: 268 GGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIE 327
Query: 436 FLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFV 495
+ L + G V F N+ F Y T P+L+ V +++ +VA++G +GSGKST +
Sbjct: 328 EADNALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLM 386
Query: 496 NLLLRLYEPSDGQV 509
NL+ RL +P G+V
Sbjct: 387 NLIPRLIDPERGRV 400
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 43/64 (67%)
Query: 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505
L G VQF ++SF YP+RP V +L + T+ EV A+VG +GSGKST LL LY+P+
Sbjct: 11 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 506 DGQV 509
GQ+
Sbjct: 71 GGQL 74
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 42/64 (65%)
Query: 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505
+ G V+F ++SF YP+ P V +L + T+ +V A+VG +GSGKST LL LY+P+
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 506 DGQV 509
G+V
Sbjct: 73 GGKV 76
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 42/64 (65%)
Query: 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505
+ G V+F ++SF YP+ P V +L + T+ +V A+VG +GSGKST LL LY+P+
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 506 DGQV 509
G+V
Sbjct: 73 GGKV 76
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 42/64 (65%)
Query: 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505
+ G V+F ++SF YP+ P V +L + T+ +V A+VG +GSGKST LL LY+P+
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 506 DGQV 509
G+V
Sbjct: 73 GGKV 76
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 450 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
+ F NI F Y +P P IL+++ L+I+ EV+ IVG SGSGKST L+ R Y P +GQ
Sbjct: 2 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 509 V 509
V
Sbjct: 60 V 60
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 450 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
+ F NI F Y +P P IL+++ L+I+ EV+ IVG SGSGKST L+ R Y P +GQ
Sbjct: 8 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 509 V 509
V
Sbjct: 66 V 66
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 450 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
+ F NI F Y +P P IL+++ L+I+ EV+ IVG SGSGKST L+ R Y P +GQ
Sbjct: 2 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 509 V 509
V
Sbjct: 60 V 60
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 450 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
+ F NI F Y +P P IL+++ L+I+ EV+ IVG SGSGKST L+ R Y P +GQ
Sbjct: 8 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 509 V 509
V
Sbjct: 66 V 66
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 450 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
+ F NI F Y +P P IL+++ L+I+ EV+ IVG SGSGKST L+ R Y P +GQ
Sbjct: 8 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 509 V 509
V
Sbjct: 66 V 66
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 450 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
+ F NI F Y +P P IL+++ L+I+ EV+ IVG SGSGKST L+ R Y P +GQ
Sbjct: 4 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 61
Query: 509 V 509
V
Sbjct: 62 V 62
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 450 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
+ F NI F Y +P P IL+++ L+I+ EV+ IVG +GSGKST L+ R Y P +GQ
Sbjct: 4 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQ 61
Query: 509 V 509
V
Sbjct: 62 V 62
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 448 GHVQFVNISFHYPS-RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
G ++F N+ F Y R T L V T+ + +A+VG SG+GKST + LL R Y+ S
Sbjct: 52 GRIEFENVHFSYADGRET---LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISS 108
Query: 507 G 507
G
Sbjct: 109 G 109
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 447 MGHVQFVNIS--FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 504
MG ++ VN+S FH + L +V L I E + + G +GSGKST + ++ L EP
Sbjct: 2 MGRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP 61
Query: 505 SDGQV 509
+ G V
Sbjct: 62 TSGDV 66
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 439 EGVKLQRLMGHVQFVNISFHYP--SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVN 496
EGVK ++ V+ N+ F YP S+P + +N C + +A++G +G+GKST +N
Sbjct: 662 EGVKTKQ-KAIVKVTNMEFQYPGTSKPQITDINFQC---SLSSRIAVIGPNGAGKSTLIN 717
Query: 497 LLLRLYEPSDGQV 509
+L P+ G+V
Sbjct: 718 VLTGELLPTSGEV 730
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503
+++F +++F YP + L + I + A+VG +GSGKST LL R Y+
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD 71
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
N+SF + P+L ++ L IE E++AI G +GSGK++ + L+L E S+G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG 93
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
N+SF + P+L ++ L IE E++AI G +GSGK++ + L+L E S+G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG 93
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
N+SF + P+L ++ L IE E++AI G +GSGK++ + L+L E S+G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG 93
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
N+SF + P+L ++ L IE E++AI G +GSGK++ + L+L E S+G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG 93
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
N+SF + P+L ++ L IE E++AI G +GSGK++ + L+L E S+G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG 93
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 450 VQFVNIS--FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
++ NI+ FH +R T+ LN+V L + A ++ ++G SG+GKST + + L P++G
Sbjct: 2 IKLSNITKVFHQGTR-TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60
Query: 508 QV 509
V
Sbjct: 61 SV 62
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 450 VQFVNIS--FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
++ NI+ FH +R T+ LN+V L + A ++ ++G SG+GKST + + L P++G
Sbjct: 25 IKLSNITKVFHQGTR-TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 83
Query: 508 QV 509
V
Sbjct: 84 SV 85
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 450 VQFVNIS--FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
++ NI+ FH +R T+ LN+V L + A ++ ++G SG+GKST + + L P++G
Sbjct: 25 IKLSNITKVFHQGTR-TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 83
Query: 508 QV 509
V
Sbjct: 84 SV 85
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 439 EGVKLQRLMGHVQFVNISFHYP--SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVN 496
EGVK ++ V+ N F YP S+P + +N C + +A++G +G+GKST +N
Sbjct: 662 EGVKTKQ-KAIVKVTNXEFQYPGTSKPQITDINFQC---SLSSRIAVIGPNGAGKSTLIN 717
Query: 497 LLLRLYEPSDGQV 509
+L P+ G+V
Sbjct: 718 VLTGELLPTSGEV 730
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 439 EGVKLQRLMGHVQFVNISFHYP--SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVN 496
EGVK ++ V+ N F YP S+P + +N C + +A++G +G+GKST +N
Sbjct: 656 EGVKTKQ-KAIVKVTNXEFQYPGTSKPQITDINFQC---SLSSRIAVIGPNGAGKSTLIN 711
Query: 497 LLLRLYEPSDGQV 509
+L P+ G+V
Sbjct: 712 VLTGELLPTSGEV 724
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510
++ F Y + IL + + N ++A G SG GKST +LL R Y+P+ G++
Sbjct: 6 HVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 450 VQFVNISFHYP-SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
V+ N++ Y + L +V L I+ E V+I+G SGSGKST +N++ L +P++G+
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 509 V 509
V
Sbjct: 62 V 62
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
L +V L I+ E V+I+G SGSGKST +N++ L +P++G+V
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEV 62
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
H+ ++ SF P+LN + L+++ E++ I+G SG GK+T + L +P G+
Sbjct: 6 HIGHLSKSFQ-----NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGE 60
Query: 509 V 509
+
Sbjct: 61 I 61
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
IL + L+++ E V+I+G SGSGKST + +L L P++G+V
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV 61
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
++N V L I + E+VAI+G +G+GKST + LL PS G+
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGE 67
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 30/42 (71%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
L +V L I+ E V+I G SGSGKST +N++ L +P++G+V
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEV 62
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 30/42 (71%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
LN++ L I+ E +A++G SGSGKST + + +Y+P+ G++
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI 60
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 449 HVQFVNIS--FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
++ VN+S FH + L +V L I E + + G +GSGKST + ++ L EP+
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 507 GQV 509
G V
Sbjct: 62 GDV 64
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 35/56 (62%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
++SF S P+L + IE +++A+ G +G+GK++ + +++ EPS+G++
Sbjct: 40 SLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 95
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 35/56 (62%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
++SF S P+L + IE +++A+ G +G+GK++ + +++ EPS+G++
Sbjct: 40 SLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 95
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
I EV+ IVG +G GK+TFV +L + EP++G+V
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 413
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
I EV+ IVG +G GK+TFV +L + EP++G+V
Sbjct: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 399
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 30/45 (66%)
Query: 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
P+L + IE +++A+ G +G+GK++ + +++ EPS+G++
Sbjct: 33 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 77
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 30/45 (66%)
Query: 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
P+L + IE +++A+ G +G+GK++ + +++ EPS+G++
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 95
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 30/45 (66%)
Query: 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
P+L + IE +++A+ G +G+GK++ + +++ EPS+G++
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 95
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 30/45 (66%)
Query: 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
P+L + IE +++A+ G +G+GK++ + +++ EPS+G++
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 95
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 30/44 (68%)
Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
P+L + IE +++A+ G +G+GK++ + +++ EPS+G++
Sbjct: 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 65
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 30/44 (68%)
Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
P+L + IE +++A+ G +G+GK++ + +++ EPS+G++
Sbjct: 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 65
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
++FV + YP + V I E+V ++G SGSGK+T + L+ L P+ G V
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
I+ EV+ IVG +G GK+TFV L + EP++G++
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKI 343
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
+Q +++ S ++ +L + + I EVV ++G SGSGKSTF+ L L + +G++
Sbjct: 1 LQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 60
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
+Q +++ S ++ +L + + I EVV ++G SGSGKSTF+ L L + +G++
Sbjct: 22 LQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
L++V + IE E I+G SG+GK+TF+ ++ L PS G++
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
L++V + IE E I+G SG+GK+TF+ ++ L PS G++
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
+N + LTI+ E + ++G SG GK+T + ++ L EP++G++
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 69
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
+N + LTI+ E + ++G SG GK+T + ++ L EP++G++
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 68
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
N+ F+Y + + + + +++A++G +G GKST ++LLL ++ P G++
Sbjct: 9 NLGFYYQAENF--LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 35.0 bits (79), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
M ++ VN+ ++ V ++ V ++ E VA++G SG GK+T + +L +Y+P+
Sbjct: 1 MPSIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTS 57
Query: 507 GQV 509
G++
Sbjct: 58 GEI 60
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
M + N +F + +R P LN + +I +VA+VG G GKS+ ++ LL + +
Sbjct: 1 MNSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE 59
Query: 507 GQVC 510
G V
Sbjct: 60 GHVA 63
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 27/42 (64%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
L+ V +++ +V I+G +GSGKST +N++ + +G+V
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 64
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 27/42 (64%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
L+ V +++ +V I+G +GSGKST +N++ + +G+V
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 64
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 27/42 (64%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
L+++ L +E+ E I+G +G+GK+ F+ L+ + P G++
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
IL + IE E+ ++G +G+GK+T + ++ L +PS G V
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
V + + L ++ E + ++G SG GK+T + ++ L EPS GQ+
Sbjct: 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 27/42 (64%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
L+ V +++ +V I+G +GSGKST +N++ + +G+V
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 64
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 499
L +V + I VA+ G+SGSGKST VN +L
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 499
L +V + I VA+ G+SGSGKST VN +L
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 499
L +V + I VA+ G+SGSGKST VN +L
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505
T+ + + L I N V AIVG S SGKST + + + P+
Sbjct: 20 TIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPN 61
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501
IL ++ +I + V ++G +GSGKST ++ LRL
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL 70
>pdb|1II2|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
(Pepck) From Trypanosoma Cruzi
pdb|1II2|B Chain B, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
(Pepck) From Trypanosoma Cruzi
Length = 524
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Query: 465 VPILNHVCLTIEAN-----EVVAIVGLSGSGKSTF 494
+P +NH+C+ AN +V GLSG+GK+T
Sbjct: 195 MPQMNHLCMHASANVGKQGDVTVFFGLSGTGKTTL 229
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
V + + L I+ E + ++G SG GK+T + + L EP+ GQ+
Sbjct: 19 VTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQI 63
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 456 SFHYPSRPTVP---ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
+F YPS +LN +E++ ++G +G+GK+T + LL +P +GQ
Sbjct: 353 AFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ 408
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
P+L + +TIE VV G +G GK+T + + +P G++
Sbjct: 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
>pdb|2R2D|A Chain A, Structure Of A Quorum-Quenching Lactonase (Aiib) From
Agrobacterium Tumefaciens
pdb|2R2D|B Chain B, Structure Of A Quorum-Quenching Lactonase (Aiib) From
Agrobacterium Tumefaciens
pdb|2R2D|C Chain C, Structure Of A Quorum-Quenching Lactonase (Aiib) From
Agrobacterium Tumefaciens
pdb|2R2D|D Chain D, Structure Of A Quorum-Quenching Lactonase (Aiib) From
Agrobacterium Tumefaciens
pdb|2R2D|E Chain E, Structure Of A Quorum-Quenching Lactonase (Aiib) From
Agrobacterium Tumefaciens
pdb|2R2D|F Chain F, Structure Of A Quorum-Quenching Lactonase (Aiib) From
Agrobacterium Tumefaciens
Length = 276
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 112 KPITVWIALSRMWNLIGRDK 131
K I W+A R W+L+GRD+
Sbjct: 154 KDIEAWLATPRNWDLVGRDE 173
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509
L + + I+ EV AI+G +G GKST + +PS G++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
>pdb|2OBK|A Chain A, X-Ray Structure Of The Putative Se Binding Protein From
Pseudomonas Fluorescens. Northeast Structural Genomics
Consortium Target Plr6.
pdb|2OBK|B Chain B, X-Ray Structure Of The Putative Se Binding Protein From
Pseudomonas Fluorescens. Northeast Structural Genomics
Consortium Target Plr6.
pdb|2OBK|C Chain C, X-Ray Structure Of The Putative Se Binding Protein From
Pseudomonas Fluorescens. Northeast Structural Genomics
Consortium Target Plr6.
pdb|2OBK|D Chain D, X-Ray Structure Of The Putative Se Binding Protein From
Pseudomonas Fluorescens. Northeast Structural Genomics
Consortium Target Plr6.
pdb|2OBK|E Chain E, X-Ray Structure Of The Putative Se Binding Protein From
Pseudomonas Fluorescens. Northeast Structural Genomics
Consortium Target Plr6.
pdb|2OBK|F Chain F, X-Ray Structure Of The Putative Se Binding Protein From
Pseudomonas Fluorescens. Northeast Structural Genomics
Consortium Target Plr6.
pdb|2OBK|G Chain G, X-Ray Structure Of The Putative Se Binding Protein From
Pseudomonas Fluorescens. Northeast Structural Genomics
Consortium Target Plr6.
pdb|2OBK|H Chain H, X-Ray Structure Of The Putative Se Binding Protein From
Pseudomonas Fluorescens. Northeast Structural Genomics
Consortium Target Plr6
Length = 103
Score = 29.3 bits (64), Expect = 5.2, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 387 PEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIG 419
PE + Y C+WL+ A W + LS+ +G
Sbjct: 6 PEVIITYCTQCQWLLRAAWLAQELLSTFSDDLG 38
>pdb|2OKA|A Chain A, Crystal Structure Of Q9hyq7_pseae From Pseudomonas
Aeruginosa. Northeast Structural Genomics Consortium
Target Par82
pdb|2OKA|B Chain B, Crystal Structure Of Q9hyq7_pseae From Pseudomonas
Aeruginosa. Northeast Structural Genomics Consortium
Target Par82
pdb|2OKA|C Chain C, Crystal Structure Of Q9hyq7_pseae From Pseudomonas
Aeruginosa. Northeast Structural Genomics Consortium
Target Par82
pdb|2OKA|D Chain D, Crystal Structure Of Q9hyq7_pseae From Pseudomonas
Aeruginosa. Northeast Structural Genomics Consortium
Target Par82
Length = 104
Score = 29.3 bits (64), Expect = 5.7, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 387 PEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIG 419
PE + Y C+WL+ A W + LS+ +G
Sbjct: 6 PEIVITYCTQCQWLLRAAWLAQELLSTFADDLG 38
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501
++ ++SF Y +L V E ++ +VG +GSGK+T + +L L
Sbjct: 11 RIELNSVSFRYNGDY---VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGL 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,625,395
Number of Sequences: 62578
Number of extensions: 514298
Number of successful extensions: 1695
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1572
Number of HSP's gapped (non-prelim): 105
length of query: 510
length of database: 14,973,337
effective HSP length: 103
effective length of query: 407
effective length of database: 8,527,803
effective search space: 3470815821
effective search space used: 3470815821
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)