Query 010471
Match_columns 510
No_of_seqs 224 out of 1981
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 00:55:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010471.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010471hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058 Peptide exporter, ABC 100.0 2.8E-70 6.1E-75 577.2 49.8 392 118-510 133-526 (716)
2 COG2274 SunT ABC-type bacterio 100.0 1.5E-57 3.2E-62 497.7 53.8 415 89-510 116-531 (709)
3 TIGR00958 3a01208 Conjugate Tr 100.0 1.1E-56 2.3E-61 501.3 56.8 461 48-510 77-539 (711)
4 TIGR01193 bacteriocin_ABC ABC- 100.0 4.8E-51 1E-55 456.9 55.9 414 89-510 118-532 (708)
5 TIGR02868 CydC thiol reductant 100.0 5.9E-51 1.3E-55 442.1 53.5 387 121-510 2-393 (529)
6 TIGR03375 type_I_sec_LssB type 100.0 8.7E-51 1.9E-55 453.9 54.8 418 88-510 105-523 (694)
7 KOG0055 Multidrug/pheromone ex 100.0 2.1E-50 4.5E-55 448.4 51.4 393 118-510 650-1048(1228)
8 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 6E-50 1.3E-54 448.4 54.9 416 88-510 115-537 (710)
9 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.4E-49 3E-54 443.6 54.9 387 120-510 123-511 (686)
10 TIGR01846 type_I_sec_HlyB type 100.0 1.8E-49 4E-54 443.0 55.6 413 88-510 102-515 (694)
11 PRK11160 cysteine/glutathione 100.0 5.3E-49 1.1E-53 430.0 54.2 388 120-510 4-398 (574)
12 PRK11174 cysteine/glutathione 100.0 5.6E-49 1.2E-53 431.9 53.3 389 118-510 8-407 (588)
13 TIGR01192 chvA glucan exporter 100.0 6.1E-48 1.3E-52 422.3 55.8 391 116-510 3-393 (585)
14 PRK11176 lipid transporter ATP 100.0 6.6E-48 1.4E-52 423.0 56.0 393 115-510 8-401 (582)
15 TIGR02857 CydD thiol reductant 100.0 8.5E-48 1.8E-52 417.4 53.2 378 130-510 1-380 (529)
16 TIGR02203 MsbA_lipidA lipid A 100.0 4.3E-47 9.3E-52 415.8 55.3 387 121-510 3-390 (571)
17 TIGR02204 MsbA_rel ABC transpo 100.0 7.4E-47 1.6E-51 414.2 55.9 393 118-510 4-398 (576)
18 COG1132 MdlB ABC-type multidru 100.0 1.6E-46 3.5E-51 410.5 54.4 385 119-510 3-387 (567)
19 PTZ00265 multidrug resistance 100.0 9E-47 1.9E-51 444.7 55.7 383 119-504 812-1220(1466)
20 TIGR01194 cyc_pep_trnsptr cycl 100.0 8.2E-47 1.8E-51 411.2 50.8 384 119-510 4-400 (555)
21 PRK10790 putative multidrug tr 100.0 4.5E-46 9.7E-51 409.1 55.5 390 115-510 6-399 (592)
22 PTZ00265 multidrug resistance 100.0 1.7E-46 3.6E-51 442.4 54.2 388 120-510 47-443 (1466)
23 PRK13657 cyclic beta-1,2-gluca 100.0 7E-46 1.5E-50 407.1 55.4 390 117-510 4-393 (588)
24 PRK10789 putative multidrug tr 100.0 5.9E-46 1.3E-50 405.7 51.1 368 140-510 3-373 (569)
25 KOG0055 Multidrug/pheromone ex 100.0 1.8E-47 3.8E-52 425.1 36.9 334 177-510 77-411 (1228)
26 TIGR01842 type_I_sec_PrtD type 100.0 5.9E-45 1.3E-49 396.1 52.2 373 128-510 2-376 (544)
27 TIGR00957 MRP_assoc_pro multi 100.0 1.8E-42 3.8E-47 412.0 52.8 368 139-510 972-1344(1522)
28 PRK10522 multidrug transporter 100.0 3.4E-42 7.5E-47 374.6 50.6 374 123-510 4-381 (547)
29 COG4987 CydC ABC-type transpor 100.0 1.1E-41 2.3E-46 349.0 47.9 383 125-510 9-396 (573)
30 TIGR00954 3a01203 Peroxysomal 100.0 3.2E-42 6.9E-47 380.8 46.3 392 116-510 75-510 (659)
31 COG4988 CydD ABC-type transpor 100.0 1.5E-40 3.3E-45 345.8 50.8 333 176-510 45-379 (559)
32 PTZ00243 ABC transporter; Prov 100.0 2E-40 4.3E-45 393.8 53.2 324 186-510 1013-1368(1560)
33 KOG0057 Mitochondrial Fe/S clu 100.0 2.2E-40 4.7E-45 339.6 42.4 389 117-510 10-409 (591)
34 PLN03130 ABC transporter C fam 100.0 4E-40 8.7E-45 391.8 51.3 365 138-510 921-1297(1622)
35 PLN03232 ABC transporter C fam 100.0 1.1E-39 2.4E-44 387.6 50.3 327 179-510 958-1294(1495)
36 KOG0056 Heavy metal exporter H 100.0 8.5E-42 1.8E-46 343.2 25.9 368 138-510 221-596 (790)
37 KOG0054 Multidrug resistance-a 100.0 1.1E-38 2.3E-43 362.8 42.3 328 179-510 866-1198(1381)
38 TIGR01271 CFTR_protein cystic 100.0 1.6E-37 3.5E-42 368.7 51.2 320 184-510 938-1276(1490)
39 PLN03232 ABC transporter C fam 100.0 1.1E-36 2.5E-41 362.0 53.2 373 127-509 296-674 (1495)
40 PLN03130 ABC transporter C fam 100.0 3.9E-36 8.5E-41 357.8 53.3 374 127-510 296-676 (1622)
41 COG5265 ATM1 ABC-type transpor 100.0 1.2E-37 2.6E-42 310.1 28.0 318 191-510 2-321 (497)
42 TIGR00957 MRP_assoc_pro multi 100.0 1.1E-33 2.4E-38 337.0 53.4 378 126-510 311-696 (1522)
43 COG4618 ArpD ABC-type protease 100.0 1.5E-34 3.2E-39 294.1 38.8 375 126-510 17-394 (580)
44 COG4615 PvdE ABC-type sideroph 100.0 4.2E-33 9.1E-38 275.0 40.0 374 124-510 5-381 (546)
45 TIGR01271 CFTR_protein cystic 100.0 2.1E-31 4.6E-36 316.6 52.6 374 128-510 76-484 (1490)
46 PTZ00243 ABC transporter; Prov 100.0 1.4E-30 3E-35 310.0 51.4 381 125-509 237-717 (1560)
47 KOG0054 Multidrug resistance-a 100.0 9.1E-27 2E-31 265.8 47.9 377 129-509 198-578 (1381)
48 PF00664 ABC_membrane: ABC tra 100.0 1.6E-25 3.4E-30 218.6 38.2 270 135-404 2-275 (275)
49 COG4178 ABC-type uncharacteriz 99.9 3.2E-23 6.9E-28 219.9 43.7 340 166-509 81-450 (604)
50 KOG0060 Long-chain acyl-CoA tr 99.8 6.3E-18 1.4E-22 175.3 32.4 307 201-509 152-492 (659)
51 COG1116 TauB ABC-type nitrate/ 99.6 1.7E-16 3.8E-21 151.0 6.6 59 449-510 3-61 (248)
52 COG3638 ABC-type phosphate/pho 99.6 4.1E-16 8.8E-21 146.3 6.9 60 449-510 3-62 (258)
53 COG1120 FepC ABC-type cobalami 99.6 4.6E-16 9.9E-21 150.7 6.7 59 449-510 2-60 (258)
54 COG1121 ZnuC ABC-type Mn/Zn tr 99.6 8.3E-16 1.8E-20 148.2 6.9 60 448-510 3-62 (254)
55 COG2884 FtsE Predicted ATPase 99.6 4.7E-16 1E-20 141.1 4.5 59 450-510 2-60 (223)
56 COG1126 GlnQ ABC-type polar am 99.6 9.7E-16 2.1E-20 142.1 6.5 59 449-510 2-60 (240)
57 COG1124 DppF ABC-type dipeptid 99.6 1.6E-15 3.4E-20 143.4 6.7 62 449-510 3-65 (252)
58 cd03233 ABC_PDR_domain1 The pl 99.6 1.6E-15 3.4E-20 144.3 6.6 62 449-510 3-68 (202)
59 cd03216 ABC_Carb_Monos_I This 99.6 1.6E-15 3.6E-20 139.2 6.4 58 450-510 1-58 (163)
60 TIGR00960 3a0501s02 Type II (G 99.6 1.9E-15 4.2E-20 145.1 6.8 60 450-510 2-61 (216)
61 COG1127 Ttg2A ABC-type transpo 99.6 1.9E-15 4.1E-20 142.2 6.2 60 448-510 7-66 (263)
62 cd03248 ABCC_TAP TAP, the Tran 99.6 4.4E-15 9.5E-20 143.7 8.9 66 445-510 7-72 (226)
63 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.6 2.1E-15 4.5E-20 145.1 6.4 61 450-510 1-62 (218)
64 cd03263 ABC_subfamily_A The AB 99.6 2.4E-15 5.2E-20 144.8 6.8 60 450-510 1-60 (220)
65 PRK13631 cbiO cobalt transport 99.6 3.6E-15 7.7E-20 151.5 8.2 63 448-510 20-84 (320)
66 KOG0064 Peroxisomal long-chain 99.6 1.7E-10 3.6E-15 119.2 41.9 302 200-508 182-538 (728)
67 cd03266 ABC_NatA_sodium_export 99.6 3.9E-15 8.4E-20 143.2 7.7 61 450-510 2-63 (218)
68 cd03223 ABCD_peroxisomal_ALDP 99.6 3.6E-15 7.8E-20 137.4 7.1 59 450-510 1-59 (166)
69 cd03257 ABC_NikE_OppD_transpor 99.6 3.5E-15 7.6E-20 144.4 7.4 61 450-510 2-63 (228)
70 cd03247 ABCC_cytochrome_bd The 99.6 3.9E-15 8.4E-20 138.7 7.0 60 450-510 1-60 (178)
71 PRK11629 lolD lipoprotein tran 99.6 3.6E-15 7.9E-20 145.0 7.1 62 449-510 5-67 (233)
72 PRK13650 cbiO cobalt transport 99.6 4.2E-15 9.1E-20 148.4 7.6 62 449-510 4-65 (279)
73 TIGR02673 FtsE cell division A 99.6 4.7E-15 1E-19 142.2 7.4 59 450-510 2-60 (214)
74 cd03244 ABCC_MRP_domain2 Domai 99.6 5.9E-15 1.3E-19 142.2 8.1 62 448-510 1-62 (221)
75 PRK13646 cbiO cobalt transport 99.6 4.8E-15 1E-19 148.6 7.4 62 449-510 2-65 (286)
76 PRK13643 cbiO cobalt transport 99.6 5.5E-15 1.2E-19 148.2 7.5 61 450-510 2-64 (288)
77 PRK13647 cbiO cobalt transport 99.6 5E-15 1.1E-19 147.5 7.1 60 449-510 4-63 (274)
78 TIGR02211 LolD_lipo_ex lipopro 99.6 5.4E-15 1.2E-19 142.5 7.0 61 450-510 2-63 (221)
79 cd03246 ABCC_Protease_Secretio 99.5 6.6E-15 1.4E-19 136.5 7.1 60 450-510 1-60 (173)
80 TIGR02315 ABC_phnC phosphonate 99.5 5.8E-15 1.3E-19 144.4 7.1 59 450-510 2-60 (243)
81 cd03293 ABC_NrtD_SsuB_transpor 99.5 5.8E-15 1.3E-19 142.2 7.0 61 450-510 1-62 (220)
82 COG1136 SalX ABC-type antimicr 99.5 6.2E-15 1.3E-19 140.1 7.0 60 450-509 2-62 (226)
83 COG3839 MalK ABC-type sugar tr 99.5 5.8E-15 1.3E-19 148.4 7.1 60 448-510 2-61 (338)
84 cd03250 ABCC_MRP_domain1 Domai 99.5 6.4E-15 1.4E-19 140.3 7.1 61 450-510 1-63 (204)
85 PRK10908 cell division protein 99.5 6.4E-15 1.4E-19 142.1 7.2 59 450-510 2-60 (222)
86 PRK10584 putative ABC transpor 99.5 7.3E-15 1.6E-19 142.3 7.6 62 449-510 6-68 (228)
87 PRK13637 cbiO cobalt transport 99.5 7.2E-15 1.6E-19 147.4 7.6 62 449-510 2-65 (287)
88 COG3842 PotA ABC-type spermidi 99.5 5.6E-15 1.2E-19 149.3 6.8 60 448-510 4-63 (352)
89 cd03369 ABCC_NFT1 Domain 2 of 99.5 9.4E-15 2E-19 139.4 8.1 63 447-510 4-66 (207)
90 cd03291 ABCC_CFTR1 The CFTR su 99.5 1.4E-14 3.1E-19 144.5 9.7 81 422-510 15-95 (282)
91 cd03258 ABC_MetN_methionine_tr 99.5 7.1E-15 1.5E-19 142.9 7.3 61 450-510 2-63 (233)
92 cd03254 ABCC_Glucan_exporter_l 99.5 9.3E-15 2E-19 141.6 8.0 61 448-510 1-61 (229)
93 PRK13539 cytochrome c biogenes 99.5 6.2E-15 1.3E-19 140.7 6.7 58 450-510 3-60 (207)
94 cd03296 ABC_CysA_sulfate_impor 99.5 5.6E-15 1.2E-19 144.2 6.3 59 449-510 2-60 (239)
95 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.5 7.6E-15 1.6E-19 143.1 7.2 61 450-510 1-61 (238)
96 PRK13645 cbiO cobalt transport 99.5 9.1E-15 2E-19 146.8 8.0 64 447-510 4-69 (289)
97 cd03230 ABC_DR_subfamily_A Thi 99.5 6.3E-15 1.4E-19 136.6 6.3 58 450-510 1-58 (173)
98 TIGR02769 nickel_nikE nickel i 99.5 7.2E-15 1.6E-19 145.7 7.0 61 450-510 3-69 (265)
99 TIGR02314 ABC_MetN D-methionin 99.5 7.1E-15 1.5E-19 150.3 6.9 61 450-510 2-63 (343)
100 PRK13642 cbiO cobalt transport 99.5 9.1E-15 2E-19 145.9 7.5 62 449-510 4-65 (277)
101 PRK13634 cbiO cobalt transport 99.5 8.8E-15 1.9E-19 146.9 7.4 62 449-510 2-65 (290)
102 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.5 8.5E-15 1.8E-19 131.6 6.4 58 450-510 1-58 (144)
103 TIGR02324 CP_lyasePhnL phospho 99.5 9E-15 1.9E-19 141.3 6.9 61 450-510 2-66 (224)
104 PRK13649 cbiO cobalt transport 99.5 1E-14 2.2E-19 145.8 7.5 61 450-510 3-65 (280)
105 cd03252 ABCC_Hemolysin The ABC 99.5 1E-14 2.2E-19 142.2 7.2 60 450-510 1-60 (237)
106 cd03245 ABCC_bacteriocin_expor 99.5 1.4E-14 2.9E-19 139.6 7.9 62 448-510 1-62 (220)
107 PRK13651 cobalt transporter AT 99.5 1.1E-14 2.4E-19 147.0 7.6 62 449-510 2-65 (305)
108 PRK14250 phosphate ABC transpo 99.5 9.5E-15 2.1E-19 142.8 6.9 59 449-510 3-61 (241)
109 TIGR02982 heterocyst_DevA ABC 99.5 1.1E-14 2.4E-19 140.4 7.2 61 450-510 2-63 (220)
110 PRK10247 putative ABC transpor 99.5 1.1E-14 2.4E-19 140.8 7.2 59 449-510 7-65 (225)
111 PRK13644 cbiO cobalt transport 99.5 1.2E-14 2.6E-19 144.8 7.5 59 450-510 2-60 (274)
112 PRK15056 manganese/iron transp 99.5 9.7E-15 2.1E-19 145.3 6.7 60 449-510 6-65 (272)
113 cd03288 ABCC_SUR2 The SUR doma 99.5 1.4E-14 3E-19 143.1 7.7 65 445-510 15-79 (257)
114 PRK11247 ssuB aliphatic sulfon 99.5 1.2E-14 2.5E-19 143.4 7.2 60 448-510 11-70 (257)
115 PRK11153 metN DL-methionine tr 99.5 1E-14 2.2E-19 149.8 6.9 61 450-510 2-63 (343)
116 PRK15112 antimicrobial peptide 99.5 1.3E-14 2.8E-19 144.0 7.3 62 449-510 4-71 (267)
117 PRK13633 cobalt transporter AT 99.5 1.3E-14 2.9E-19 144.9 7.4 62 449-510 4-68 (280)
118 PRK13652 cbiO cobalt transport 99.5 1.3E-14 2.7E-19 144.9 7.2 60 449-510 3-62 (277)
119 cd03289 ABCC_CFTR2 The CFTR su 99.5 1.4E-14 3.1E-19 144.0 7.4 61 448-510 1-61 (275)
120 PRK11124 artP arginine transpo 99.5 1.1E-14 2.5E-19 142.3 6.6 59 449-510 2-60 (242)
121 cd03228 ABCC_MRP_Like The MRP 99.5 1.7E-14 3.7E-19 133.5 7.4 60 450-510 1-60 (171)
122 cd03213 ABCG_EPDR ABCG transpo 99.5 1.4E-14 3.1E-19 136.8 6.9 62 449-510 3-69 (194)
123 PRK13648 cbiO cobalt transport 99.5 1.6E-14 3.4E-19 143.6 7.4 61 449-510 7-67 (269)
124 COG1122 CbiO ABC-type cobalt t 99.5 1.9E-14 4.1E-19 139.0 7.6 59 449-509 3-61 (235)
125 PRK13636 cbiO cobalt transport 99.5 1.5E-14 3.3E-19 144.7 7.2 60 449-510 5-64 (283)
126 PRK13543 cytochrome c biogenes 99.5 1.9E-14 4.1E-19 138.1 7.6 59 449-510 11-69 (214)
127 PRK10575 iron-hydroxamate tran 99.5 1.4E-14 3E-19 143.7 6.8 59 449-510 11-69 (265)
128 PRK13639 cbiO cobalt transport 99.5 1.6E-14 3.5E-19 144.0 7.2 59 450-510 2-60 (275)
129 PRK11701 phnK phosphonate C-P 99.5 1.6E-14 3.4E-19 142.7 7.1 59 449-510 6-64 (258)
130 PRK13641 cbiO cobalt transport 99.5 2E-14 4.4E-19 144.1 7.8 62 449-510 2-65 (287)
131 PRK13632 cbiO cobalt transport 99.5 1.8E-14 4E-19 143.2 7.5 61 449-510 7-67 (271)
132 PRK14257 phosphate ABC transpo 99.5 2.7E-14 5.8E-19 145.6 8.8 65 445-510 76-145 (329)
133 PRK11831 putative ABC transpor 99.5 1.4E-14 3.1E-19 143.9 6.5 59 449-510 7-65 (269)
134 PRK11264 putative amino-acid A 99.5 1.7E-14 3.6E-19 141.8 6.8 58 449-509 3-60 (250)
135 PRK10895 lipopolysaccharide AB 99.5 1.3E-14 2.9E-19 141.7 6.0 59 449-510 3-61 (241)
136 COG4608 AppF ABC-type oligopep 99.5 1.4E-14 3E-19 139.8 6.0 62 449-510 4-71 (268)
137 cd03234 ABCG_White The White s 99.5 1.7E-14 3.7E-19 139.6 6.4 61 450-510 4-68 (226)
138 TIGR02323 CP_lyasePhnK phospho 99.5 1.9E-14 4.1E-19 141.7 6.8 59 449-510 3-61 (253)
139 PRK11614 livF leucine/isoleuci 99.5 1.9E-14 4.2E-19 140.2 6.8 59 449-510 5-63 (237)
140 PRK13635 cbiO cobalt transport 99.5 2.5E-14 5.4E-19 142.9 7.4 61 449-510 5-65 (279)
141 TIGR01288 nodI ATP-binding ABC 99.5 2E-14 4.3E-19 145.3 6.7 59 449-510 4-62 (303)
142 cd03232 ABC_PDR_domain2 The pl 99.5 2.4E-14 5.2E-19 135.0 6.9 62 449-510 3-67 (192)
143 PRK10619 histidine/lysine/argi 99.5 2.1E-14 4.5E-19 141.8 6.3 61 447-510 3-63 (257)
144 PRK11300 livG leucine/isoleuci 99.5 1.9E-14 4.2E-19 141.8 6.1 59 449-510 5-63 (255)
145 PRK13640 cbiO cobalt transport 99.5 3.1E-14 6.7E-19 142.4 7.6 61 448-509 4-67 (282)
146 PRK10744 pstB phosphate transp 99.5 2.7E-14 5.9E-19 141.1 7.1 61 447-510 11-76 (260)
147 PRK11231 fecE iron-dicitrate t 99.5 2.5E-14 5.3E-19 141.1 6.6 58 449-509 2-59 (255)
148 COG4525 TauB ABC-type taurine 99.5 2.2E-14 4.7E-19 130.8 5.6 60 449-509 3-62 (259)
149 PRK09544 znuC high-affinity zi 99.5 2.5E-14 5.4E-19 140.6 6.5 59 449-510 4-62 (251)
150 cd03251 ABCC_MsbA MsbA is an e 99.5 2.9E-14 6.3E-19 138.6 6.9 60 450-510 1-60 (234)
151 PRK13548 hmuV hemin importer A 99.5 2.8E-14 6E-19 141.0 6.9 59 449-510 2-60 (258)
152 TIGR03411 urea_trans_UrtD urea 99.5 2.7E-14 5.8E-19 139.6 6.6 59 449-510 2-60 (242)
153 PRK10419 nikE nickel transport 99.5 2.8E-14 6.1E-19 141.7 6.8 62 449-510 3-70 (268)
154 PRK14235 phosphate transporter 99.5 3.1E-14 6.7E-19 141.3 6.1 61 447-510 17-82 (267)
155 PRK14256 phosphate ABC transpo 99.5 4E-14 8.7E-19 139.3 6.9 61 447-510 2-67 (252)
156 PRK11308 dppF dipeptide transp 99.5 3.8E-14 8.3E-19 144.4 6.9 62 449-510 5-73 (327)
157 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.5 2.9E-14 6.3E-19 137.8 5.5 58 450-510 23-80 (224)
158 COG1134 TagH ABC-type polysacc 99.5 4.2E-14 9E-19 134.0 6.4 46 464-509 39-84 (249)
159 PRK14240 phosphate transporter 99.5 4.5E-14 9.7E-19 138.8 6.9 60 448-510 2-66 (250)
160 PRK10253 iron-enterobactin tra 99.5 4.3E-14 9.2E-19 140.2 6.7 60 448-510 6-65 (265)
161 PRK14259 phosphate ABC transpo 99.5 5.2E-14 1.1E-18 139.9 7.3 60 448-510 12-76 (269)
162 PRK13537 nodulation ABC transp 99.5 4.6E-14 9.9E-19 142.7 6.7 60 448-510 6-65 (306)
163 PRK13536 nodulation factor exp 99.5 4.5E-14 9.7E-19 144.5 6.6 59 449-510 41-99 (340)
164 PRK14267 phosphate ABC transpo 99.5 5E-14 1.1E-18 138.7 6.7 59 449-510 4-67 (253)
165 PRK14238 phosphate transporter 99.5 5.2E-14 1.1E-18 140.0 6.9 59 449-510 24-87 (271)
166 PRK11650 ugpC glycerol-3-phosp 99.5 5E-14 1.1E-18 145.1 6.9 60 449-510 3-62 (356)
167 PRK14237 phosphate transporter 99.5 5.4E-14 1.2E-18 139.6 6.9 61 447-510 18-83 (267)
168 PRK14273 phosphate ABC transpo 99.5 6.4E-14 1.4E-18 138.0 7.3 59 449-510 7-70 (254)
169 PRK14242 phosphate transporter 99.5 5.1E-14 1.1E-18 138.6 6.5 59 449-510 6-69 (253)
170 cd03294 ABC_Pro_Gly_Bertaine T 99.5 3E-14 6.6E-19 141.5 4.8 57 451-510 26-82 (269)
171 PRK14241 phosphate transporter 99.5 5.2E-14 1.1E-18 139.0 6.4 59 449-510 4-67 (258)
172 CHL00131 ycf16 sulfate ABC tra 99.5 5.5E-14 1.2E-18 138.3 6.5 59 449-510 7-67 (252)
173 PRK11432 fbpC ferric transport 99.5 5.3E-14 1.1E-18 144.5 6.5 59 449-510 6-64 (351)
174 PRK14248 phosphate ABC transpo 99.5 8E-14 1.7E-18 138.4 7.6 59 449-510 21-84 (268)
175 COG1135 AbcC ABC-type metal io 99.5 7E-14 1.5E-18 136.2 6.8 61 450-510 2-64 (339)
176 PRK14251 phosphate ABC transpo 99.5 6.3E-14 1.4E-18 137.8 6.5 59 449-510 4-67 (251)
177 PRK11022 dppD dipeptide transp 99.5 5.7E-14 1.2E-18 143.1 6.3 62 449-510 3-69 (326)
178 PRK14268 phosphate ABC transpo 99.5 6.9E-14 1.5E-18 138.1 6.7 60 448-510 11-75 (258)
179 COG1117 PstB ABC-type phosphat 99.5 4.9E-14 1.1E-18 130.4 5.1 56 448-506 6-61 (253)
180 PRK11000 maltose/maltodextrin 99.5 6.3E-14 1.4E-18 145.2 6.6 59 449-510 3-61 (369)
181 COG4181 Predicted ABC-type tra 99.5 4.1E-14 8.8E-19 126.4 4.4 62 449-510 6-68 (228)
182 TIGR03265 PhnT2 putative 2-ami 99.5 6.3E-14 1.4E-18 144.2 6.5 59 449-510 4-62 (353)
183 PRK10851 sulfate/thiosulfate t 99.5 6.8E-14 1.5E-18 143.9 6.7 59 449-510 2-60 (353)
184 PRK14247 phosphate ABC transpo 99.5 6.9E-14 1.5E-18 137.4 6.4 59 449-510 3-66 (250)
185 PRK10418 nikD nickel transport 99.5 8E-14 1.7E-18 137.3 6.8 58 449-510 4-65 (254)
186 PRK15079 oligopeptide ABC tran 99.5 7.2E-14 1.6E-18 142.6 6.6 62 449-510 8-79 (331)
187 PRK14249 phosphate ABC transpo 99.5 8.8E-14 1.9E-18 136.8 7.0 59 448-509 3-66 (251)
188 PRK14262 phosphate ABC transpo 99.5 7.7E-14 1.7E-18 137.1 6.5 59 449-510 3-66 (250)
189 PRK14269 phosphate ABC transpo 99.5 7.5E-14 1.6E-18 136.9 6.2 59 449-510 2-63 (246)
190 PRK09452 potA putrescine/sperm 99.4 9.8E-14 2.1E-18 143.6 7.0 60 448-510 13-72 (375)
191 PRK14274 phosphate ABC transpo 99.4 8.7E-14 1.9E-18 137.5 6.2 59 449-510 12-75 (259)
192 PRK14254 phosphate ABC transpo 99.4 1.4E-13 3.1E-18 137.8 7.6 60 448-510 38-102 (285)
193 PRK14246 phosphate ABC transpo 99.4 1.1E-13 2.5E-18 136.5 6.7 59 448-509 9-67 (257)
194 PRK14236 phosphate transporter 99.4 1.4E-13 3E-18 137.1 7.1 60 448-510 24-88 (272)
195 PRK09536 btuD corrinoid ABC tr 99.4 9.9E-14 2.1E-18 144.5 6.2 59 449-510 3-61 (402)
196 TIGR03258 PhnT 2-aminoethylpho 99.4 1.1E-13 2.5E-18 142.6 6.6 61 447-510 3-65 (362)
197 PRK09473 oppD oligopeptide tra 99.4 1.3E-13 2.8E-18 140.8 6.9 62 449-510 12-77 (330)
198 PRK14260 phosphate ABC transpo 99.4 1.3E-13 2.9E-18 136.1 6.8 60 448-510 6-70 (259)
199 PRK14243 phosphate transporter 99.4 1.1E-13 2.3E-18 137.3 6.1 59 449-510 10-73 (264)
200 PRK14272 phosphate ABC transpo 99.4 1.2E-13 2.7E-18 135.8 6.4 59 449-510 4-67 (252)
201 TIGR03522 GldA_ABC_ATP gliding 99.4 1.1E-13 2.4E-18 139.8 6.2 59 449-510 2-60 (301)
202 PRK14252 phosphate ABC transpo 99.4 1.5E-13 3.3E-18 136.2 6.9 61 447-510 14-79 (265)
203 PRK14271 phosphate ABC transpo 99.4 1.3E-13 2.8E-18 137.5 6.4 59 449-510 21-84 (276)
204 PRK09984 phosphonate/organopho 99.4 1.4E-13 3E-18 136.3 6.6 58 449-509 4-64 (262)
205 cd03267 ABC_NatA_like Similar 99.4 9.4E-14 2E-18 135.3 5.2 46 465-510 34-79 (236)
206 PRK14270 phosphate ABC transpo 99.4 1.6E-13 3.5E-18 134.9 6.9 60 448-510 3-67 (251)
207 PRK14239 phosphate transporter 99.4 1.7E-13 3.6E-18 134.8 6.6 59 449-510 5-68 (252)
208 PRK14261 phosphate ABC transpo 99.4 1.6E-13 3.6E-18 135.0 6.3 59 449-510 6-69 (253)
209 PRK15093 antimicrobial peptide 99.4 1.7E-13 3.7E-18 140.0 6.6 62 449-510 3-69 (330)
210 PRK13545 tagH teichoic acids e 99.4 2E-13 4.4E-18 144.4 7.2 63 448-510 20-82 (549)
211 PRK14258 phosphate ABC transpo 99.4 2.4E-13 5.2E-18 134.5 7.1 59 448-509 6-69 (261)
212 PRK14275 phosphate ABC transpo 99.4 2.4E-13 5.2E-18 136.2 7.1 60 448-510 38-102 (286)
213 PRK10938 putative molybdenum t 99.4 2.5E-13 5.3E-18 146.5 7.4 59 449-510 3-61 (490)
214 PRK14255 phosphate ABC transpo 99.4 2.3E-13 4.9E-18 133.9 6.5 59 449-510 5-68 (252)
215 PRK14253 phosphate ABC transpo 99.4 2.1E-13 4.5E-18 134.0 6.1 58 449-509 3-65 (249)
216 PRK11607 potG putrescine trans 99.4 3.1E-13 6.7E-18 140.1 7.6 61 447-510 17-77 (377)
217 PRK14265 phosphate ABC transpo 99.4 3.4E-13 7.4E-18 134.3 7.5 59 448-509 19-82 (274)
218 COG1119 ModF ABC-type molybden 99.4 4E-13 8.6E-18 127.3 7.4 59 448-509 30-88 (257)
219 cd00267 ABC_ATPase ABC (ATP-bi 99.4 2.6E-13 5.6E-18 123.7 5.9 57 451-510 1-57 (157)
220 PRK14244 phosphate ABC transpo 99.4 2.3E-13 5E-18 133.8 5.9 59 449-510 5-68 (251)
221 PRK14264 phosphate ABC transpo 99.4 4.1E-13 8.9E-18 135.8 7.6 61 447-510 43-108 (305)
222 PRK11819 putative ABC transpor 99.4 3.3E-13 7.2E-18 147.5 7.4 59 449-509 6-64 (556)
223 COG0411 LivG ABC-type branched 99.4 7.8E-14 1.7E-18 132.0 1.9 58 450-510 5-62 (250)
224 PRK10762 D-ribose transporter 99.4 3E-13 6.5E-18 146.1 6.5 59 449-510 4-62 (501)
225 COG1131 CcmA ABC-type multidru 99.4 3.3E-13 7.1E-18 135.4 6.2 60 449-510 4-63 (293)
226 COG1129 MglA ABC-type sugar tr 99.4 3.4E-13 7.3E-18 141.3 6.4 59 449-510 8-66 (500)
227 COG1123 ATPase components of v 99.4 4.1E-13 8.8E-18 141.6 7.0 62 449-510 280-349 (539)
228 TIGR03719 ABC_ABC_ChvD ATP-bin 99.4 4.8E-13 1E-17 146.2 7.6 59 449-509 4-62 (552)
229 PRK09700 D-allose transporter 99.4 3.6E-13 7.8E-18 145.9 6.5 59 449-510 5-63 (510)
230 PRK11288 araG L-arabinose tran 99.4 4E-13 8.6E-18 145.2 6.6 59 449-510 4-62 (501)
231 PRK15439 autoinducer 2 ABC tra 99.4 5.2E-13 1.1E-17 144.5 7.1 59 449-510 11-69 (510)
232 PRK14245 phosphate ABC transpo 99.4 5E-13 1.1E-17 131.3 6.4 59 449-510 3-66 (250)
233 PRK10261 glutathione transport 99.4 5.3E-13 1.2E-17 147.6 6.8 61 449-509 12-73 (623)
234 PRK14266 phosphate ABC transpo 99.4 5.9E-13 1.3E-17 130.8 6.3 59 449-510 3-66 (250)
235 PRK13549 xylose transporter AT 99.4 5.6E-13 1.2E-17 144.2 6.3 62 449-510 259-321 (506)
236 PRK13546 teichoic acids export 99.4 6.6E-13 1.4E-17 131.4 6.3 46 465-510 37-82 (264)
237 TIGR03269 met_CoM_red_A2 methy 99.4 6.8E-13 1.5E-17 144.1 6.7 62 449-510 279-342 (520)
238 PRK13549 xylose transporter AT 99.4 7.8E-13 1.7E-17 143.1 7.0 59 449-510 5-65 (506)
239 PRK11147 ABC transporter ATPas 99.4 7.8E-13 1.7E-17 146.7 7.1 59 449-510 3-61 (635)
240 PRK15064 ABC transporter ATP-b 99.4 9.2E-13 2E-17 143.3 7.3 60 448-510 318-377 (530)
241 PRK10261 glutathione transport 99.3 8.5E-13 1.8E-17 146.0 6.9 62 449-510 313-382 (623)
242 PRK15134 microcin C ABC transp 99.3 9.9E-13 2.1E-17 143.1 7.1 61 449-509 5-71 (529)
243 PLN03073 ABC transporter F fam 99.3 1.1E-12 2.4E-17 146.2 7.4 61 448-510 507-567 (718)
244 PRK10070 glycine betaine trans 99.3 1.1E-12 2.4E-17 136.6 5.9 58 450-510 29-86 (400)
245 PRK10636 putative ABC transpor 99.3 1.5E-12 3.2E-17 144.3 7.2 60 448-510 311-370 (638)
246 PRK11147 ABC transporter ATPas 99.3 1.6E-12 3.5E-17 144.2 7.0 59 449-510 319-377 (635)
247 TIGR02633 xylG D-xylose ABC tr 99.3 1.6E-12 3.4E-17 140.6 6.6 62 449-510 257-319 (500)
248 PRK14263 phosphate ABC transpo 99.3 1.8E-12 3.9E-17 128.3 6.3 59 449-510 8-71 (261)
249 PRK11819 putative ABC transpor 99.3 2E-12 4.4E-17 141.4 7.1 60 448-510 323-382 (556)
250 TIGR03719 ABC_ABC_ChvD ATP-bin 99.3 2.2E-12 4.8E-17 141.0 7.1 60 448-510 321-380 (552)
251 COG4619 ABC-type uncharacteriz 99.3 2.1E-12 4.5E-17 115.2 4.8 47 464-510 15-61 (223)
252 PRK10535 macrolide transporter 99.3 3.1E-12 6.7E-17 142.1 7.2 62 449-510 4-66 (648)
253 COG3845 ABC-type uncharacteriz 99.3 2.8E-12 6.2E-17 132.0 6.1 59 449-510 4-62 (501)
254 COG1118 CysA ABC-type sulfate/ 99.3 2.5E-12 5.4E-17 125.2 5.3 59 449-510 2-60 (345)
255 COG0410 LivF ABC-type branched 99.3 3.5E-12 7.5E-17 120.0 6.0 59 449-510 3-61 (237)
256 PRK10938 putative molybdenum t 99.3 3E-12 6.5E-17 138.1 6.2 60 448-510 259-319 (490)
257 PRK09700 D-allose transporter 99.3 3.1E-12 6.8E-17 138.6 6.0 57 449-510 265-321 (510)
258 PRK15134 microcin C ABC transp 99.3 2.9E-12 6.4E-17 139.4 5.7 61 449-510 275-343 (529)
259 PRK11098 microcin B17 transpor 99.2 1.4E-07 3.1E-12 97.8 38.2 221 198-431 161-396 (409)
260 PRK10982 galactose/methyl gala 99.2 5.8E-12 1.3E-16 135.9 5.8 57 449-510 250-306 (491)
261 COG4167 SapF ABC-type antimicr 99.2 3.7E-12 7.9E-17 115.1 3.3 48 463-510 24-71 (267)
262 COG0444 DppD ABC-type dipeptid 99.2 9.9E-12 2.1E-16 122.7 6.3 60 450-509 2-67 (316)
263 COG0488 Uup ATPase components 99.2 2.1E-11 4.5E-16 130.7 9.2 61 447-509 319-379 (530)
264 TIGR03415 ABC_choXWV_ATP choli 99.2 9.3E-12 2E-16 128.8 6.3 54 454-510 29-82 (382)
265 PLN03073 ABC transporter F fam 99.2 1E-11 2.2E-16 138.6 6.9 59 448-509 176-237 (718)
266 TIGR00767 rho transcription te 99.2 1.6E-11 3.6E-16 125.5 7.6 83 416-505 102-195 (415)
267 COG1123 ATPase components of v 99.2 1.3E-11 2.8E-16 130.3 6.7 61 449-509 5-70 (539)
268 TIGR01257 rim_protein retinal- 99.2 4.6E-10 1E-14 135.4 20.5 62 448-510 1936-1997(2272)
269 COG0488 Uup ATPase components 99.2 1.4E-11 3E-16 132.1 6.8 59 449-510 3-61 (530)
270 PRK12369 putative transporter; 99.2 5.6E-07 1.2E-11 91.4 38.9 192 232-430 118-321 (326)
271 COG4107 PhnK ABC-type phosphon 99.2 1.3E-11 2.9E-16 110.6 4.5 58 449-509 6-63 (258)
272 PF06472 ABC_membrane_2: ABC t 99.2 2.1E-07 4.6E-12 93.1 35.2 200 163-363 58-262 (281)
273 COG4555 NatA ABC-type Na+ tran 99.2 1.2E-11 2.7E-16 113.5 3.5 59 450-510 2-60 (245)
274 TIGR00956 3a01205 Pleiotropic 99.2 2.8E-11 6.2E-16 144.2 7.1 62 449-510 759-824 (1394)
275 COG4152 ABC-type uncharacteriz 99.2 2.3E-11 5E-16 114.9 4.7 59 449-510 2-60 (300)
276 COG4586 ABC-type uncharacteriz 99.2 2.2E-11 4.7E-16 116.8 4.3 46 465-510 37-82 (325)
277 COG4778 PhnL ABC-type phosphon 99.2 2.6E-11 5.5E-16 108.5 4.4 62 449-510 4-69 (235)
278 PRK13409 putative ATPase RIL; 99.2 3.2E-11 6.9E-16 132.2 6.0 58 449-510 340-397 (590)
279 PLN03211 ABC transporter G-25; 99.1 5E-11 1.1E-15 132.2 7.5 46 465-510 81-128 (659)
280 PRK11288 araG L-arabinose tran 99.1 3.2E-11 6.9E-16 130.4 5.8 55 449-510 257-311 (501)
281 PRK10762 D-ribose transporter 99.1 3.6E-11 7.9E-16 130.0 5.8 54 449-510 257-310 (501)
282 TIGR01257 rim_protein retinal- 99.1 5.9E-11 1.3E-15 143.0 7.5 62 448-510 927-988 (2272)
283 COG0396 sufC Cysteine desulfur 99.1 7.2E-11 1.6E-15 110.8 6.1 60 449-510 3-64 (251)
284 COG4133 CcmA ABC-type transpor 99.1 8.2E-11 1.8E-15 107.2 5.3 56 452-510 5-60 (209)
285 KOG0927 Predicted transporter 99.1 5.7E-11 1.2E-15 123.3 4.0 60 449-510 389-448 (614)
286 PRK13409 putative ATPase RIL; 99.1 7.7E-11 1.7E-15 129.2 4.8 53 454-509 78-130 (590)
287 PRK15439 autoinducer 2 ABC tra 99.1 1.3E-10 2.7E-15 126.0 6.3 54 449-510 268-321 (510)
288 COG4136 ABC-type uncharacteriz 99.0 2.2E-10 4.7E-15 100.6 5.5 54 449-505 2-55 (213)
289 COG4598 HisP ABC-type histidin 99.0 1.2E-10 2.7E-15 105.0 3.4 59 449-510 6-64 (256)
290 cd00820 PEPCK_HprK Phosphoenol 99.0 1.8E-10 4E-15 97.0 4.0 35 465-499 2-36 (107)
291 TIGR00955 3a01204 The Eye Pigm 99.0 2E-10 4.3E-15 127.1 5.1 63 447-510 15-86 (617)
292 COG1137 YhbG ABC-type (unclass 99.0 3.8E-11 8.2E-16 110.3 -0.5 60 448-510 3-62 (243)
293 COG4172 ABC-type uncharacteriz 99.0 5E-10 1.1E-14 112.6 7.1 62 448-510 275-344 (534)
294 COG4175 ProV ABC-type proline/ 99.0 2.6E-10 5.6E-15 111.5 4.4 43 468-510 44-86 (386)
295 PRK10733 hflB ATP-dependent me 99.0 1E-11 2.3E-16 137.2 -6.3 169 301-503 34-210 (644)
296 PLN03140 ABC transporter G fam 98.9 1.1E-09 2.4E-14 130.6 8.0 62 449-510 867-940 (1470)
297 COG4674 Uncharacterized ABC-ty 98.9 5.7E-10 1.2E-14 102.2 3.0 59 449-510 5-63 (249)
298 KOG2355 Predicted ABC-type tra 98.9 1.7E-09 3.7E-14 99.7 5.7 61 447-509 11-71 (291)
299 COG2401 ABC-type ATPase fused 98.9 1.1E-09 2.3E-14 110.5 4.5 66 444-509 352-448 (593)
300 COG4161 ArtP ABC-type arginine 98.9 1.8E-09 3.9E-14 95.9 4.7 58 449-509 2-59 (242)
301 PF13748 ABC_membrane_3: ABC t 98.9 7.6E-06 1.6E-10 77.8 29.3 170 126-306 4-173 (237)
302 KOG0066 eIF2-interacting prote 98.9 1.9E-09 4.1E-14 109.1 5.2 60 449-510 586-645 (807)
303 TIGR03238 dnd_assoc_3 dnd syst 98.9 1.3E-09 2.8E-14 113.6 4.1 42 466-509 20-62 (504)
304 COG1101 PhnK ABC-type uncharac 98.8 3.1E-09 6.7E-14 98.9 4.1 47 464-510 18-64 (263)
305 KOG0061 Transporter, ABC super 98.8 1.3E-08 2.9E-13 111.9 7.5 64 447-510 23-91 (613)
306 PLN03140 ABC transporter G fam 98.7 7.9E-09 1.7E-13 123.4 4.8 47 464-510 177-226 (1470)
307 TIGR00956 3a01205 Pleiotropic 98.7 1.3E-08 2.9E-13 121.6 5.3 46 465-510 74-123 (1394)
308 COG4172 ABC-type uncharacteriz 98.7 1.8E-08 4E-13 101.6 5.2 56 449-504 6-62 (534)
309 PRK15494 era GTPase Era; Provi 98.5 1.5E-07 3.2E-12 96.7 4.8 56 444-501 13-75 (339)
310 PRK06002 fliI flagellum-specif 98.4 2.3E-07 5E-12 97.1 6.0 59 448-509 138-196 (450)
311 KOG0927 Predicted transporter 98.4 6.3E-07 1.4E-11 93.7 6.8 58 446-506 72-129 (614)
312 PF05992 SbmA_BacA: SbmA/BacA- 98.4 0.0038 8.3E-08 62.1 36.8 228 186-428 71-311 (315)
313 cd03279 ABC_sbcCD SbcCD and ot 98.3 6E-07 1.3E-11 86.1 4.5 54 449-508 5-59 (213)
314 KOG0059 Lipid exporter ABCA1 a 98.2 1.3E-06 2.7E-11 100.6 5.9 61 448-510 563-623 (885)
315 PRK07721 fliI flagellum-specif 98.2 1.1E-06 2.3E-11 92.7 4.5 44 465-509 146-189 (438)
316 PRK07196 fliI flagellum-specif 98.2 1.1E-06 2.3E-11 92.1 4.0 43 464-507 142-184 (434)
317 PRK08149 ATP synthase SpaL; Va 98.1 2E-06 4.3E-11 90.0 4.4 41 465-506 139-179 (428)
318 PF13555 AAA_29: P-loop contai 98.1 3.5E-06 7.6E-11 63.6 4.4 33 470-502 14-47 (62)
319 cd01136 ATPase_flagellum-secre 98.1 3.1E-06 6.7E-11 85.7 4.6 45 464-509 56-100 (326)
320 KOG0062 ATPase component of AB 98.0 4.3E-06 9.4E-11 87.1 4.7 51 447-500 78-128 (582)
321 PRK07594 type III secretion sy 98.0 3.7E-06 7.9E-11 88.1 3.8 59 448-509 128-186 (433)
322 TIGR00630 uvra excinuclease AB 98.0 6.5E-06 1.4E-10 94.1 5.4 40 449-496 612-651 (924)
323 COG4170 SapD ABC-type antimicr 98.0 6.6E-06 1.4E-10 76.5 4.4 39 465-503 20-58 (330)
324 cd03282 ABC_MSH4_euk MutS4 hom 98.0 5.3E-06 1.2E-10 78.9 3.8 35 465-499 16-50 (204)
325 PRK09862 putative ATP-dependen 97.9 7.4E-06 1.6E-10 87.7 4.3 55 452-509 187-241 (506)
326 TIGR03497 FliI_clade2 flagella 97.9 9E-06 2E-10 85.1 4.8 44 465-509 125-168 (413)
327 TIGR02546 III_secr_ATP type II 97.9 7.9E-06 1.7E-10 86.0 4.1 45 464-509 132-176 (422)
328 PRK09099 type III secretion sy 97.9 1.1E-05 2.3E-10 85.0 5.0 45 464-509 150-194 (441)
329 cd03287 ABC_MSH3_euk MutS3 hom 97.9 7.1E-06 1.5E-10 79.0 3.1 44 465-508 18-62 (222)
330 TIGR02788 VirB11 P-type DNA tr 97.9 6.8E-06 1.5E-10 83.3 3.1 39 471-509 137-175 (308)
331 TIGR01026 fliI_yscN ATPase Fli 97.9 8.1E-06 1.8E-10 86.1 3.7 44 465-509 151-194 (440)
332 PRK06793 fliI flagellum-specif 97.9 1.9E-05 4.1E-10 82.8 6.1 58 449-509 130-187 (432)
333 PRK00635 excinuclease ABC subu 97.9 1.1E-05 2.3E-10 96.9 4.7 53 450-509 936-988 (1809)
334 PLN02796 D-glycerate 3-kinase 97.9 4.1E-06 8.8E-11 84.9 1.0 40 466-505 80-127 (347)
335 cd03243 ABC_MutS_homologs The 97.9 1.4E-05 2.9E-10 76.0 4.4 32 466-499 19-50 (202)
336 KOG0065 Pleiotropic drug resis 97.9 1.6E-05 3.5E-10 91.4 5.5 54 449-502 787-841 (1391)
337 PRK05688 fliI flagellum-specif 97.8 1.4E-05 3E-10 84.1 4.5 41 464-505 155-195 (451)
338 PRK00635 excinuclease ABC subu 97.8 2E-05 4.4E-10 94.6 6.0 40 449-496 600-639 (1809)
339 TIGR03498 FliI_clade3 flagella 97.8 1.6E-05 3.5E-10 83.2 4.0 44 465-509 128-171 (418)
340 PRK08972 fliI flagellum-specif 97.8 2E-05 4.4E-10 82.4 4.6 40 465-505 150-189 (444)
341 TIGR03496 FliI_clade1 flagella 97.8 2.9E-05 6.3E-10 81.3 5.5 57 450-509 112-168 (411)
342 PRK01889 GTPase RsgA; Reviewed 97.8 9.2E-06 2E-10 83.9 1.8 43 467-509 184-226 (356)
343 PRK08472 fliI flagellum-specif 97.8 2E-05 4.3E-10 82.7 4.0 44 465-509 145-188 (434)
344 PRK05922 type III secretion sy 97.7 3.1E-05 6.7E-10 81.2 5.1 44 465-509 145-188 (434)
345 PRK00349 uvrA excinuclease ABC 97.7 3E-05 6.4E-10 89.0 5.2 43 449-499 614-656 (943)
346 PRK06731 flhF flagellar biosyn 97.7 1.7E-05 3.6E-10 78.5 2.6 55 449-504 40-101 (270)
347 PRK09270 nucleoside triphospha 97.7 1.9E-05 4.2E-10 76.5 2.9 32 477-508 32-63 (229)
348 PRK06936 type III secretion sy 97.7 3.4E-05 7.4E-10 80.9 4.7 41 464-505 149-189 (439)
349 PRK06820 type III secretion sy 97.7 4E-05 8.6E-10 80.6 4.9 43 464-507 150-192 (440)
350 PF03193 DUF258: Protein of un 97.7 4.1E-05 8.9E-10 69.6 4.0 33 477-509 34-66 (161)
351 COG1245 Predicted ATPase, RNas 97.7 5.9E-05 1.3E-09 77.8 5.4 53 454-508 340-397 (591)
352 TIGR02858 spore_III_AA stage I 97.6 4.4E-05 9.6E-10 75.6 4.1 31 479-509 112-142 (270)
353 PRK00098 GTPase RsgA; Reviewed 97.6 4.6E-05 1E-09 76.9 4.1 33 477-509 163-195 (298)
354 cd03285 ABC_MSH2_euk MutS2 hom 97.6 5.1E-05 1.1E-09 73.2 4.1 34 465-498 17-50 (222)
355 PRK07960 fliI flagellum-specif 97.6 3.9E-05 8.4E-10 80.5 3.3 40 466-506 164-203 (455)
356 PRK06995 flhF flagellar biosyn 97.6 2.8E-05 6.2E-10 82.6 2.2 41 468-508 246-286 (484)
357 PRK06315 type III secretion sy 97.6 4.3E-05 9.3E-10 80.4 3.4 41 465-506 152-192 (442)
358 TIGR00554 panK_bact pantothena 97.6 4.2E-05 9E-10 76.5 3.0 31 479-509 63-95 (290)
359 PRK13477 bifunctional pantoate 97.6 5.5E-05 1.2E-09 81.1 3.9 44 465-509 272-318 (512)
360 KOG0062 ATPase component of AB 97.5 8.1E-05 1.8E-09 77.8 4.6 61 448-509 361-421 (582)
361 cd03284 ABC_MutS1 MutS1 homolo 97.5 5.4E-05 1.2E-09 72.7 3.1 35 465-500 18-52 (216)
362 TIGR01526 nadR_NMN_Atrans nico 97.5 3.8E-05 8.3E-10 78.4 1.8 36 469-504 151-188 (325)
363 cd01854 YjeQ_engC YjeQ/EngC. 97.5 8.2E-05 1.8E-09 74.7 3.7 41 468-509 152-192 (287)
364 COG3845 ABC-type uncharacteriz 97.5 0.00057 1.2E-08 71.5 9.5 62 447-510 255-316 (501)
365 PRK14723 flhF flagellar biosyn 97.4 6.2E-05 1.3E-09 83.8 2.4 41 467-507 174-214 (767)
366 TIGR03015 pepcterm_ATPase puta 97.4 3.1E-05 6.7E-10 76.7 -0.3 49 457-505 21-70 (269)
367 TIGR01069 mutS2 MutS2 family p 97.4 0.00018 3.9E-09 81.4 5.3 52 448-507 294-352 (771)
368 PRK09183 transposase/IS protei 97.4 6.1E-05 1.3E-09 74.4 1.2 50 451-501 73-125 (259)
369 PRK08927 fliI flagellum-specif 97.4 0.00017 3.7E-09 75.8 4.6 37 470-506 150-186 (442)
370 TIGR00368 Mg chelatase-related 97.3 0.00012 2.6E-09 78.7 2.7 45 465-509 198-242 (499)
371 PRK10416 signal recognition pa 97.3 0.00013 2.7E-09 74.2 2.6 34 476-509 112-145 (318)
372 cd03280 ABC_MutS2 MutS2 homolo 97.3 0.0002 4.3E-09 67.9 3.8 29 479-507 29-65 (200)
373 TIGR02524 dot_icm_DotB Dot/Icm 97.3 0.00019 4.1E-09 74.1 3.9 28 476-503 132-159 (358)
374 PRK13657 cyclic beta-1,2-gluca 97.3 0.45 9.8E-06 52.7 40.1 34 182-215 63-96 (588)
375 PRK14722 flhF flagellar biosyn 97.3 0.00012 2.7E-09 75.5 2.4 40 465-504 124-163 (374)
376 TIGR00150 HI0065_YjeE ATPase, 97.2 0.00028 6.1E-09 62.1 3.7 32 474-505 18-49 (133)
377 PRK14721 flhF flagellar biosyn 97.2 0.00021 4.6E-09 74.9 3.3 27 476-502 189-215 (420)
378 TIGR00750 lao LAO/AO transport 97.2 0.00016 3.4E-09 73.1 2.2 39 466-504 22-60 (300)
379 COG0178 UvrA Excinuclease ATPa 97.2 0.00027 5.8E-09 77.7 3.4 40 449-496 606-645 (935)
380 PRK13851 type IV secretion sys 97.2 0.0003 6.6E-09 72.1 3.5 36 474-509 158-193 (344)
381 cd03286 ABC_MSH6_euk MutS6 hom 97.1 0.00048 1E-08 66.2 4.1 37 465-501 17-53 (218)
382 PLN02165 adenylate isopentenyl 97.1 0.0004 8.6E-09 70.4 3.5 28 476-503 41-68 (334)
383 PLN03046 D-glycerate 3-kinase; 97.0 0.00039 8.6E-09 72.0 3.1 27 479-505 213-239 (460)
384 cd02019 NK Nucleoside/nucleoti 97.0 0.00051 1.1E-08 53.3 2.6 23 480-502 1-23 (69)
385 PLN02318 phosphoribulokinase/u 97.0 0.00055 1.2E-08 73.9 3.6 30 479-509 66-95 (656)
386 cd03281 ABC_MSH5_euk MutS5 hom 96.9 0.00065 1.4E-08 65.1 2.9 34 466-499 17-50 (213)
387 PRK12288 GTPase RsgA; Reviewed 96.9 0.00061 1.3E-08 70.1 2.8 33 477-509 204-236 (347)
388 TIGR00157 ribosome small subun 96.9 0.00083 1.8E-08 65.8 3.6 33 477-509 119-151 (245)
389 TIGR00606 rad50 rad50. This fa 96.8 0.0013 2.9E-08 79.2 5.8 32 478-509 28-64 (1311)
390 COG1245 Predicted ATPase, RNas 96.8 0.0011 2.3E-08 68.7 3.6 52 454-508 79-130 (591)
391 KOG0066 eIF2-interacting prote 96.7 0.0014 3E-08 67.4 4.2 48 449-499 264-311 (807)
392 PRK12289 GTPase RsgA; Reviewed 96.7 0.0013 2.8E-08 67.7 3.7 33 477-509 171-203 (352)
393 COG1162 Predicted GTPases [Gen 96.7 0.001 2.2E-08 66.1 2.8 34 476-509 162-195 (301)
394 TIGR01420 pilT_fam pilus retra 96.7 0.0014 3.1E-08 67.5 3.9 35 475-509 119-154 (343)
395 TIGR00954 3a01203 Peroxysomal 96.7 1.6 3.4E-05 49.2 32.7 114 192-306 152-271 (659)
396 cd00009 AAA The AAA+ (ATPases 96.7 0.0015 3.3E-08 57.0 3.5 29 476-504 17-45 (151)
397 TIGR03819 heli_sec_ATPase heli 96.5 0.0019 4.1E-08 66.3 3.6 35 475-509 175-209 (340)
398 PRK10463 hydrogenase nickel in 96.5 0.0021 4.6E-08 64.0 3.8 34 474-507 100-133 (290)
399 PRK12726 flagellar biosynthesi 96.5 0.0018 3.9E-08 66.7 2.9 29 474-502 202-230 (407)
400 cd01858 NGP_1 NGP-1. Autoanti 96.5 0.0022 4.8E-08 58.1 3.2 27 477-503 101-127 (157)
401 PRK13898 type IV secretion sys 96.4 0.0032 6.9E-08 72.2 5.0 39 471-509 439-477 (800)
402 PRK08099 bifunctional DNA-bind 96.4 0.0022 4.7E-08 67.3 3.3 27 479-505 220-246 (399)
403 COG1129 MglA ABC-type sugar tr 96.4 0.0033 7.2E-08 66.8 4.7 55 449-510 263-317 (500)
404 PRK13900 type IV secretion sys 96.4 0.0021 4.5E-08 65.8 3.0 32 475-506 157-188 (332)
405 cd01882 BMS1 Bms1. Bms1 is an 96.4 0.0027 5.9E-08 61.3 3.4 29 475-503 36-64 (225)
406 PF00664 ABC_membrane: ABC tra 96.3 1 2.2E-05 43.0 31.6 168 193-362 59-228 (275)
407 TIGR02782 TrbB_P P-type conjug 96.3 0.0027 5.8E-08 64.1 3.2 30 475-504 129-158 (299)
408 TIGR00602 rad24 checkpoint pro 96.3 0.0019 4E-08 71.3 2.1 38 467-504 99-136 (637)
409 COG3910 Predicted ATPase [Gene 96.3 0.0028 6.1E-08 58.5 2.9 21 479-499 38-58 (233)
410 TIGR03499 FlhF flagellar biosy 96.3 0.0023 5E-08 64.0 2.6 30 476-505 192-221 (282)
411 TIGR01192 chvA glucan exporter 96.3 2.5 5.3E-05 46.9 40.0 34 183-216 64-97 (585)
412 PRK12727 flagellar biosynthesi 96.3 0.0024 5.3E-08 68.4 2.8 26 476-501 348-373 (559)
413 cd01129 PulE-GspE PulE/GspE Th 96.3 0.0041 8.8E-08 61.7 4.2 29 476-504 78-106 (264)
414 PTZ00202 tuzin; Provisional 96.3 0.002 4.4E-08 67.1 2.1 34 466-501 276-309 (550)
415 cd01878 HflX HflX subfamily. 96.3 0.003 6.6E-08 59.6 3.1 23 480-502 43-65 (204)
416 TIGR01193 bacteriocin_ABC ABC- 96.3 2.9 6.3E-05 47.5 39.1 10 467-476 475-484 (708)
417 COG1133 SbmA ABC-type long-cha 96.3 1.4 3E-05 43.7 34.9 196 226-429 182-390 (405)
418 cd01857 HSR1_MMR1 HSR1/MMR1. 96.2 0.0051 1.1E-07 54.7 4.1 23 480-502 85-107 (141)
419 PTZ00035 Rad51 protein; Provis 96.2 0.0034 7.3E-08 64.4 3.3 30 474-503 114-143 (337)
420 PF00437 T2SE: Type II/IV secr 96.2 0.0026 5.7E-08 63.1 2.4 35 474-508 123-157 (270)
421 PRK09866 hypothetical protein; 96.2 0.0039 8.5E-08 67.8 3.7 24 480-503 71-94 (741)
422 TIGR03796 NHPM_micro_ABC1 NHPM 96.2 3.2 7E-05 47.1 36.9 45 298-342 317-361 (710)
423 PRK09087 hypothetical protein; 96.2 0.0037 8E-08 60.5 3.1 23 477-499 43-65 (226)
424 PRK13894 conjugal transfer ATP 96.1 0.0038 8.3E-08 63.5 3.2 29 474-502 144-172 (319)
425 PF05049 IIGP: Interferon-indu 96.1 0.0041 8.9E-08 64.1 3.3 28 480-507 37-64 (376)
426 KOG0063 RNAse L inhibitor, ABC 96.0 0.0079 1.7E-07 62.0 4.8 50 456-507 342-396 (592)
427 cd01853 Toc34_like Toc34-like 96.0 0.0048 1E-07 60.5 3.2 27 477-503 30-56 (249)
428 PLN02348 phosphoribulokinase 95.9 0.0053 1.2E-07 63.5 3.0 25 479-503 50-74 (395)
429 PRK10522 multidrug transporter 95.9 3.7 8E-05 45.1 37.2 10 467-476 324-333 (547)
430 KOG0065 Pleiotropic drug resis 95.8 0.0078 1.7E-07 70.0 4.2 40 464-503 127-166 (1391)
431 COG2274 SunT ABC-type bacterio 95.8 4.5 9.8E-05 45.7 37.2 39 121-159 147-185 (709)
432 PLN03210 Resistant to P. syrin 95.8 0.005 1.1E-07 73.4 2.6 38 471-508 200-238 (1153)
433 smart00763 AAA_PrkA PrkA AAA d 95.8 0.0061 1.3E-07 62.5 2.8 28 477-504 77-104 (361)
434 PLN02772 guanylate kinase 95.8 0.0082 1.8E-07 62.1 3.7 56 448-504 100-161 (398)
435 TIGR02525 plasmid_TraJ plasmid 95.7 0.0075 1.6E-07 62.6 3.3 29 475-503 146-174 (372)
436 PRK11889 flhF flagellar biosyn 95.7 0.0068 1.5E-07 62.8 2.8 26 478-503 241-266 (436)
437 TIGR00064 ftsY signal recognit 95.7 0.0072 1.6E-07 60.1 2.7 33 476-508 70-102 (272)
438 cd01849 YlqF_related_GTPase Yl 95.6 0.0097 2.1E-07 53.8 3.4 27 476-502 98-124 (155)
439 cd01855 YqeH YqeH. YqeH is an 95.6 0.0081 1.8E-07 56.2 2.9 36 467-502 116-151 (190)
440 PRK05537 bifunctional sulfate 95.6 0.0079 1.7E-07 66.0 3.2 32 476-507 390-421 (568)
441 PRK05703 flhF flagellar biosyn 95.6 0.0079 1.7E-07 63.7 3.0 29 475-503 218-246 (424)
442 PRK13833 conjugal transfer pro 95.6 0.0076 1.7E-07 61.2 2.8 28 475-502 141-168 (323)
443 PRK05439 pantothenate kinase; 95.6 0.0075 1.6E-07 60.9 2.5 25 479-503 87-111 (311)
444 TIGR02903 spore_lon_C ATP-depe 95.5 0.0099 2.2E-07 66.0 3.3 31 477-507 174-204 (615)
445 TIGR02239 recomb_RAD51 DNA rep 95.5 0.0074 1.6E-07 61.4 2.1 34 474-507 92-127 (316)
446 PRK12608 transcription termina 95.5 0.011 2.5E-07 60.8 3.5 30 473-502 128-157 (380)
447 TIGR01846 type_I_sec_HlyB type 95.4 6.2 0.00013 44.7 39.4 13 467-479 457-469 (694)
448 PRK08154 anaerobic benzoate ca 95.4 0.012 2.5E-07 59.8 3.3 28 474-501 129-156 (309)
449 PLN02200 adenylate kinase fami 95.4 0.011 2.3E-07 57.6 2.9 26 477-502 42-67 (234)
450 PF02367 UPF0079: Uncharacteri 95.4 0.0097 2.1E-07 51.7 2.3 30 474-503 11-40 (123)
451 TIGR03375 type_I_sec_LssB type 95.4 6.4 0.00014 44.6 40.1 9 452-460 481-489 (694)
452 PRK10646 ADP-binding protein; 95.3 0.014 3.1E-07 52.6 3.2 34 471-504 21-54 (153)
453 PF03215 Rad17: Rad17 cell cyc 95.3 0.0091 2E-07 64.6 2.3 37 468-504 35-71 (519)
454 COG5192 BMS1 GTP-binding prote 95.3 0.0098 2.1E-07 62.9 2.3 28 476-503 67-94 (1077)
455 TIGR02533 type_II_gspE general 95.3 0.017 3.8E-07 62.2 4.2 31 477-507 241-271 (486)
456 PRK10246 exonuclease subunit S 95.2 0.015 3.1E-07 68.7 3.8 29 475-503 27-56 (1047)
457 PF13481 AAA_25: AAA domain; P 95.1 0.02 4.3E-07 53.4 3.6 32 465-499 22-53 (193)
458 PRK12724 flagellar biosynthesi 95.1 0.011 2.5E-07 61.8 2.1 26 477-502 222-247 (432)
459 PRK09435 membrane ATPase/prote 95.1 0.014 3E-07 59.6 2.7 27 479-505 57-83 (332)
460 TIGR03797 NHPM_micro_ABC2 NHPM 95.0 8.2 0.00018 43.7 39.0 41 116-156 123-164 (686)
461 TIGR02204 MsbA_rel ABC transpo 95.0 7.3 0.00016 42.9 38.7 10 451-460 355-364 (576)
462 TIGR03878 thermo_KaiC_2 KaiC d 95.0 0.022 4.8E-07 56.2 3.7 25 474-498 32-56 (259)
463 PRK13764 ATPase; Provisional 94.9 0.018 3.8E-07 63.2 3.2 33 475-508 254-286 (602)
464 PF12775 AAA_7: P-loop contain 94.9 0.02 4.2E-07 57.1 3.2 32 474-505 29-60 (272)
465 PLN02199 shikimate kinase 94.9 0.0087 1.9E-07 59.7 0.5 48 449-501 75-125 (303)
466 cd01134 V_A-ATPase_A V/A-type 94.9 0.026 5.5E-07 57.6 3.8 35 470-504 149-183 (369)
467 cd01122 GP4d_helicase GP4d_hel 94.9 0.024 5.2E-07 56.1 3.6 37 466-502 18-54 (271)
468 PF01580 FtsK_SpoIIIE: FtsK/Sp 94.8 0.02 4.3E-07 54.3 2.6 33 467-499 27-59 (205)
469 COG0630 VirB11 Type IV secreto 94.7 0.02 4.3E-07 58.2 2.7 38 469-506 134-171 (312)
470 cd01133 F1-ATPase_beta F1 ATP 94.7 0.021 4.6E-07 56.5 2.8 33 471-503 62-94 (274)
471 PRK11176 lipid transporter ATP 94.7 8.5 0.00019 42.5 39.3 14 466-479 342-355 (582)
472 TIGR00958 3a01208 Conjugate Tr 94.7 10 0.00022 43.1 42.6 44 115-158 148-191 (711)
473 PRK12597 F0F1 ATP synthase sub 94.6 0.023 5E-07 60.4 2.9 33 470-502 135-167 (461)
474 TIGR03420 DnaA_homol_Hda DnaA 94.6 0.027 5.9E-07 53.9 3.3 35 467-502 28-62 (226)
475 PRK13853 type IV secretion sys 94.5 0.042 9.1E-07 63.0 5.0 22 480-501 428-449 (789)
476 COG0802 Predicted ATPase or ki 94.5 0.037 8.1E-07 49.4 3.5 34 475-509 22-55 (149)
477 PRK09376 rho transcription ter 94.5 0.027 5.8E-07 58.4 3.0 51 448-500 129-191 (416)
478 PTZ00454 26S protease regulato 94.5 0.03 6.6E-07 58.7 3.5 35 467-503 170-204 (398)
479 COG4962 CpaF Flp pilus assembl 94.5 0.032 7E-07 56.4 3.4 30 477-506 172-201 (355)
480 PRK14974 cell division protein 94.5 0.025 5.3E-07 57.9 2.6 29 477-505 139-167 (336)
481 PTZ00361 26 proteosome regulat 94.4 0.026 5.6E-07 59.9 2.8 34 468-503 209-242 (438)
482 COG3451 VirB4 Type IV secretor 94.3 0.026 5.7E-07 64.2 2.8 20 480-499 438-457 (796)
483 cd01121 Sms Sms (bacterial rad 94.3 0.026 5.7E-07 58.6 2.6 35 474-508 78-112 (372)
484 cd01379 MYSc_type_III Myosin m 94.3 0.024 5.3E-07 63.1 2.3 30 474-503 82-111 (653)
485 PRK08903 DnaA regulatory inact 94.2 0.039 8.5E-07 53.1 3.3 35 468-502 32-66 (227)
486 TIGR00450 mnmE_trmE_thdF tRNA 94.2 0.035 7.5E-07 59.2 3.1 27 475-501 200-226 (442)
487 TIGR00416 sms DNA repair prote 94.2 0.03 6.5E-07 59.9 2.6 32 474-505 90-121 (454)
488 TIGR01242 26Sp45 26S proteasom 94.1 0.041 8.8E-07 57.2 3.5 35 467-503 147-181 (364)
489 TIGR03185 DNA_S_dndD DNA sulfu 94.1 0.066 1.4E-06 60.1 5.3 26 480-505 30-56 (650)
490 KOG0635 Adenosine 5'-phosphosu 94.0 0.035 7.5E-07 49.4 2.3 45 449-501 10-54 (207)
491 PRK08084 DNA replication initi 94.0 0.047 1E-06 53.1 3.4 26 475-500 42-67 (235)
492 PRK12678 transcription termina 94.0 0.028 6E-07 60.7 1.9 52 448-501 377-439 (672)
493 PRK06526 transposase; Provisio 94.0 0.04 8.6E-07 54.3 2.9 26 475-500 95-120 (254)
494 TIGR00991 3a0901s02IAP34 GTP-b 93.9 0.044 9.5E-07 55.2 3.2 24 479-502 39-62 (313)
495 PF13245 AAA_19: Part of AAA d 93.9 0.047 1E-06 43.2 2.7 26 477-502 9-35 (76)
496 TIGR02881 spore_V_K stage V sp 93.9 0.038 8.2E-07 54.6 2.6 24 479-502 43-66 (261)
497 PRK11174 cysteine/glutathione 93.9 13 0.00027 41.2 31.7 12 450-461 364-375 (588)
498 PRK13830 conjugal transfer pro 93.8 0.064 1.4E-06 61.7 4.6 34 471-504 449-482 (818)
499 cd01132 F1_ATPase_alpha F1 ATP 93.8 0.044 9.4E-07 54.2 2.8 33 470-502 61-94 (274)
500 TIGR02012 tigrfam_recA protein 93.8 0.049 1.1E-06 55.3 3.3 25 474-498 51-75 (321)
No 1
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-70 Score=577.21 Aligned_cols=392 Identities=33% Similarity=0.552 Sum_probs=368.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 118 IALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE--EAMVFHKSSRFLVLLCVTSGIFSGLRSGCF 195 (510)
Q Consensus 118 ~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~--~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~ 195 (510)
..++|++.+.+|+++++..++.++++.++..+++|.+++..++....+ ....+......+.++.++.+++.++|.+++
T Consensus 133 ~~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~ 212 (716)
T KOG0058|consen 133 TLLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLL 212 (716)
T ss_pred hHHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999999999999999999999999999888654331 223455566677788888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010471 196 SIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTL 275 (510)
Q Consensus 196 ~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~l 275 (510)
.+++.++..++|.++|+++++|+++|||++++||++||+++|++.+.+.++..++..+++.++.++.+++|+++||+|++
T Consensus 213 ~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltl 292 (716)
T KOG0058|consen 213 QYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTL 292 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 276 SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG 355 (510)
Q Consensus 276 i~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (510)
++++.+|++.++.++|+++.+++.++.|+..+++++++.|.+++|||||+|++|++|.+||.+..++..+...|....++
T Consensus 293 v~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~ 372 (716)
T KOG0058|consen 293 VTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYG 372 (716)
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 010471 356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ 435 (510)
Q Consensus 356 ~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~ 435 (510)
.+.+..++..++..+.++++|++++..|++|.|++++|++|..++..++..++..+++++++.+|.+|++|++|++|..+
T Consensus 373 ~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~ 452 (716)
T KOG0058|consen 373 IFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIP 452 (716)
T ss_pred HhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 436 FLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 436 ~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.. +...|....|.|+|+||+|+||.||+.+||||+||+|+|||+||+||||||||||+++||+|||+|++|+|+
T Consensus 453 ~~-G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Il 526 (716)
T KOG0058|consen 453 LT-GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRIL 526 (716)
T ss_pred CC-CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence 33 222333578999999999999999999999999999999999999999999999999999999999999985
No 2
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.5e-57 Score=497.72 Aligned_cols=415 Identities=21% Similarity=0.294 Sum_probs=362.8
Q ss_pred HHhcCCCcccccCCCcccCCCCCCCcchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh-chhhh
Q 010471 89 RQVFPGGSWWNLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSA-QREEA 167 (510)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~-~~~~~ 167 (510)
.+.|. +....++|..+.+. ..++. ..+.+++..+.++++.+..+++.+++..++.++.|++....+|.. ...+.
T Consensus 116 ~~~~t-g~~l~l~~~~~~~~-~~~~~---~~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~ 190 (709)
T COG2274 116 EKLWT-GIALLLAPTASRKF-KDIPP---FGLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASR 190 (709)
T ss_pred HHhhh-eeEEEEeccccccc-ccccc---cchHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCch
Confidence 34454 45566676654211 22222 356788999999999999999999999999999999988777543 12222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHH
Q 010471 168 MVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGN 247 (510)
Q Consensus 168 ~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~ 247 (510)
..+.-....+....+...++..+|.+++.+.+.|+..++-.++|+|++++|++||+++++||+++|++ |.++|+++++.
T Consensus 191 ~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~ 269 (709)
T COG2274 191 STLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTG 269 (709)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHH
Confidence 22222222334455667788899999999999999999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhc
Q 010471 248 DINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYG 327 (510)
Q Consensus 248 ~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~ 327 (510)
.+..++..+..+++++++|++|||+|++++++.+|+++++..++.+..++..++..+..++.++.+.|+++|++|||+.+
T Consensus 270 ~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~ 349 (709)
T COG2274 270 SILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALA 349 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHH
Q 010471 328 TEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRM 407 (510)
Q Consensus 328 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l 407 (510)
.|+++.++|++...++.+.+.+........+....++..+..++++|+|+++|++|++|+|+++||..+..++..|+.++
T Consensus 350 ~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L 429 (709)
T COG2274 350 AEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRL 429 (709)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999877777788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCC
Q 010471 408 VDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLS 487 (510)
Q Consensus 408 ~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~S 487 (510)
.+.+.++++...+.+|+.++++.++|++........+...|+|+|+||+|+|+.+ ++++|+|+|++|+|||+|||||+|
T Consensus 430 ~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~S 508 (709)
T COG2274 430 SQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRS 508 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCC
Confidence 9999999999999999999999998855322123445678999999999999864 357999999999999999999999
Q ss_pred CCcHHHHHHHHhcccCCCCceeC
Q 010471 488 GSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 488 GSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|||||||+|||+|+|+|++|+|+
T Consensus 509 GsGKSTL~KLL~gly~p~~G~I~ 531 (709)
T COG2274 509 GSGKSTLLKLLLGLYKPQQGRIL 531 (709)
T ss_pred CCCHHHHHHHHhcCCCCCCceEE
Confidence 99999999999999999999985
No 3
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.1e-56 Score=501.27 Aligned_cols=461 Identities=31% Similarity=0.399 Sum_probs=388.1
Q ss_pred eeEeecchhhhhhhhcCCCCCCcCccccccchhHHHHHHHHHHhcCCCcccccCCCcccCCC-CCCCcchHHHHHHHHHh
Q 010471 48 FKRVSFPITNSAFTDSGVPNNESNDNIIKFFDYFQDLVAFIRQVFPGGSWWNLSDGQEAENP-TAKPITVWIALSRMWNL 126 (510)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~ 126 (510)
++|++.|.|.++......+. +.......+..|...+++|+.+......|+.+.|....+.. .+++...+..+++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 155 (711)
T TIGR00958 77 ALCLATPSLSSLRALAFWEA-LDPAVRVALGLWSWFVWSYGAALPAAALWAVLSSAGASEKEAEQGQSETADLLFRLLGL 155 (711)
T ss_pred HHHHHHHHHHHHHHHHccCC-CccccccccccHHHHHHHHHHHHHHHHHHHhhCCccccccccccccchhhhHHHHHHHH
Confidence 79999999998776665411 12223347778888999998887777778888765322110 02233445678899999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 127 IGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-REEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKR 205 (510)
Q Consensus 127 ~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~~~ 205 (510)
.+++++.+..++++.++.+++.+..|++.+..++... ..+...+.....++.++.++..++.+++.+.....+.++..+
T Consensus 156 ~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 235 (711)
T TIGR00958 156 SGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLR 235 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888776532 222222333333344455566777888888899999999999
Q ss_pred HHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 010471 206 LRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLS 285 (510)
Q Consensus 206 lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~l~~ 285 (510)
+|.++|++++++|++||++.++||+++|+++|++.+++.+...+..++.+++.+++.+++|+.++|++++++++..|+..
T Consensus 236 lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~ 315 (711)
T TIGR00958 236 IREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVF 315 (711)
T ss_pred HHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 286 IIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLY 365 (510)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 365 (510)
++...+.++.++..++.++..++.++.+.|+++|+++||+|+.|+++.++|++..++..+...+.....+........+.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (711)
T TIGR00958 316 LAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLG 395 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888988888988899999999999999999999999999999999999999999999988887766666666666667
Q ss_pred HHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccCCC
Q 010471 366 RSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQR 445 (510)
Q Consensus 366 ~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~~~~ 445 (510)
.+..++++++|++++.+|++++|++++++.|..++..|+..++..+.++.++..+.+|++++++.+++.+.. ....+.+
T Consensus 396 ~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~-~~~~~~~ 474 (711)
T TIGR00958 396 MLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT-GTLAPLN 474 (711)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CCCCCCC
Confidence 777788889999999999999999999999999999999999999999999999999999999987664321 1112223
Q ss_pred ccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 446 ~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
..++|+|+||+|+||+++++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|+
T Consensus 475 ~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 539 (711)
T TIGR00958 475 LEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVL 539 (711)
T ss_pred CCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE
Confidence 45789999999999976557899999999999999999999999999999999999999999984
No 4
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=4.8e-51 Score=456.93 Aligned_cols=414 Identities=18% Similarity=0.187 Sum_probs=344.5
Q ss_pred HHhcCCCcccccCCCcccCCCCCCCcchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhch-hhh
Q 010471 89 RQVFPGGSWWNLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR-EEA 167 (510)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~-~~~ 167 (510)
.+.|. +..+.++|+++++.+..++ ..+++++++++++++.+..+++++++..++.++.|+++...++.... .+.
T Consensus 118 ~~~~~-g~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~ 192 (708)
T TIGR01193 118 YEEWT-GIAIFISPTPEYKPIKEKE----NSLLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMM 192 (708)
T ss_pred HhhCC-CEEEEEEeccccccccccc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh
Confidence 34453 4566677776654322221 34678888899999999999999999999999999998877754321 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHH
Q 010471 168 MVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGN 247 (510)
Q Consensus 168 ~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~ 247 (510)
..+......+.++.+...++.+++.++....+.++..++|.++|++++++|+.||+++++|++++|++ |++.+++.+..
T Consensus 193 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~ 271 (708)
T TIGR01193 193 GTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALAS 271 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHH
Confidence 11111111222334456677888888999999999999999999999999999999999999999998 99999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhc
Q 010471 248 DINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYG 327 (510)
Q Consensus 248 ~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~ 327 (510)
.+...+..++..++++++|++++|++++++++.+|++.++...+.++.++..++.++..++.++.+.|+++|+++||++|
T Consensus 272 ~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~ 351 (708)
T TIGR01193 272 TILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLT 351 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Confidence 77777778888888888999999999999999999988888888888889899899999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHH
Q 010471 328 TEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRM 407 (510)
Q Consensus 328 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l 407 (510)
.|+++.++|++..+++.+...+.....+.......++..+..++++++|++++.+|++|+|+++++..+...+..|+..+
T Consensus 352 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l 431 (708)
T TIGR01193 352 SEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENI 431 (708)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888887766666566666676777788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCC
Q 010471 408 VDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLS 487 (510)
Q Consensus 408 ~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~S 487 (510)
...+..+.++..+.+|+.++++.++|.+...+........++|+|+||+|+|++ ++++|+|+||+|++||++||||+|
T Consensus 432 ~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~S 509 (708)
T TIGR01193 432 INLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMS 509 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCC
Confidence 999999999999999999999887654321111112234578999999999974 357999999999999999999999
Q ss_pred CCcHHHHHHHHhcccCCCCceeC
Q 010471 488 GSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 488 GSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|||||||+|+|+|+|+|++|+|+
T Consensus 510 GsGKSTLlklL~gl~~p~~G~I~ 532 (708)
T TIGR01193 510 GSGKSTLAKLLVGFFQARSGEIL 532 (708)
T ss_pred CCCHHHHHHHHhccCCCCCcEEE
Confidence 99999999999999999999984
No 5
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=5.9e-51 Score=442.13 Aligned_cols=387 Identities=21% Similarity=0.182 Sum_probs=321.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 010471 121 SRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRF--LVLLCVTSGIFSGLRSGCFSIA 198 (510)
Q Consensus 121 ~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~--l~~l~~~~~~~~~i~~~~~~~~ 198 (510)
++++++.+++++.++.+++++++.+++.+..|+++...++.....+. .+...... +.++.++..++.+++.+.....
T Consensus 2 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (529)
T TIGR02868 2 LRILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDA 80 (529)
T ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888999988999999999999999999888777754322111 11100001 1123344556677778888888
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 010471 199 NIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSAL 278 (510)
Q Consensus 199 ~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~l 278 (510)
..++..++|.++|++++++|+++|++.++|++++|+++|++.+++.+...+..++..++.++++++++++++|+++++++
T Consensus 81 ~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l 160 (529)
T TIGR02868 81 ALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLA 160 (529)
T ss_pred HHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999988888888898899999999999999999998
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 279 LICSFLSIIVS-VYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLW 357 (510)
Q Consensus 279 i~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (510)
+++|++.++.. +..+..++..++.++..++.++.+.|.++|+++||+|+.|+++.++|++..++..+...+..+..+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (529)
T TIGR02868 161 AGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLG 240 (529)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777665543 33444455666677788899999999999999999999999999999999999999888887777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 010471 358 NMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL 437 (510)
Q Consensus 358 ~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~ 437 (510)
.....++..+..++++++|++++.+|++++|+++++..+...+..|+..+.+.+..+.++..+.+|+.++++.+++.+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 320 (529)
T TIGR02868 241 AAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEG 320 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCC
Confidence 67777777777788889999999999999999999999999999999999999999999999999999999876653211
Q ss_pred CCC--ccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 438 SEG--VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 438 ~~~--~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
+.+ ....+..++|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+|||+|+|+|++|+|+
T Consensus 321 ~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~ 393 (529)
T TIGR02868 321 VVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVT 393 (529)
T ss_pred CCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 111 1112234679999999999853 4699999999999999999999999999999999999999999984
No 6
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=8.7e-51 Score=453.87 Aligned_cols=418 Identities=19% Similarity=0.206 Sum_probs=345.1
Q ss_pred HHHhcCCCcccccCCCcccCCCCCCCcchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc-hhh
Q 010471 88 IRQVFPGGSWWNLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-REE 166 (510)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~-~~~ 166 (510)
+.+.|. +..+.++|.++++...+++. ....+++++++++++++.+..+++++++..++.++.|+++...++... ..+
T Consensus 105 ~~~~~~-g~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~ 182 (694)
T TIGR03375 105 LEALYS-GYAIFVRPQFRFDARADELI-SPRPKHWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA 182 (694)
T ss_pred HHhhcC-CeEEEEeccccccccccccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 344453 45566677655433211100 114567788889999999999999999999999999999887775432 122
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHH
Q 010471 167 AMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIG 246 (510)
Q Consensus 167 ~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~ 246 (510)
...+......++++.++..++.+++.++....+.++..++|.++|+|++++|++| +++++||+++|+ +|++.+++++.
T Consensus 183 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~ 260 (694)
T TIGR03375 183 FETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFT 260 (694)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHh
Confidence 1111111112223344566778889999999999999999999999999999998 788999999999 59999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHh
Q 010471 247 NDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVY 326 (510)
Q Consensus 247 ~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f 326 (510)
..+...+..++.+++++++|++++|.+++++++.+|+++++...+.++.++..++..+..++.++.+.|+++|+++||++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~ 340 (694)
T TIGR03375 261 SATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKAL 340 (694)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHc
Confidence 87777777888888888999999999999999999998888888888888888888899999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHH
Q 010471 327 GTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWR 406 (510)
Q Consensus 327 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~ 406 (510)
+.|+++.++|++..++..+...+..+..+.......++..+..++++++|++++.+|++|+|++++++.+..++..|+..
T Consensus 341 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~ 420 (694)
T TIGR03375 341 NAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQ 420 (694)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888877777777777777777788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcC
Q 010471 407 MVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGL 486 (510)
Q Consensus 407 l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~ 486 (510)
+...+.++.++..+.+|+.++++.++|.+............+.|+|+||+|+|+++ ++++|+|+||+|+|||++||||+
T Consensus 421 l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~ 499 (694)
T TIGR03375 421 LAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGR 499 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECC
Confidence 99999999999999999999999876533211111122345789999999999854 35799999999999999999999
Q ss_pred CCCcHHHHHHHHhcccCCCCceeC
Q 010471 487 SGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 487 SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
||||||||+|+|+|+|+|++|+|+
T Consensus 500 sGsGKSTLlklL~gl~~p~~G~I~ 523 (694)
T TIGR03375 500 IGSGKSTLLKLLLGLYQPTEGSVL 523 (694)
T ss_pred CCCCHHHHHHHHhcCCCCCCceEE
Confidence 999999999999999999999984
No 7
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.1e-50 Score=448.39 Aligned_cols=393 Identities=26% Similarity=0.375 Sum_probs=334.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HhhchhhhH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 118 IALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAV--FSAQREEAM--VFHKSSRFLVLLCVTSGIFSGLRSG 193 (510)
Q Consensus 118 ~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i--~~~~~~~~~--~~~~~~~~l~~l~~~~~~~~~i~~~ 193 (510)
..+.+++++.+|+|+.++.+.+++++.+...-+..+.+...+ +.....|.. .......+.+.+.++..+..+++.+
T Consensus 650 ~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~ 729 (1228)
T KOG0055|consen 650 VSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHY 729 (1228)
T ss_pred ccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999998888887764333332233332 111111110 0111112233455667788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccccc-CchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 010471 194 CFSIANIVLVKRLRETLYSALLFQDVYFFDTE-AVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWP 272 (510)
Q Consensus 194 ~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~-~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~ 272 (510)
++..++.++..++|.+.|+++++++++|||+. ++|.|.+|+.+|...++..++..+..++.++..++..+++.++++|+
T Consensus 730 ~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~ 809 (1228)
T KOG0055|consen 730 FFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWR 809 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999876 35999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 273 LTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESM 352 (510)
Q Consensus 273 l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~ 352 (510)
|++++++..|++.+......++.+...++..+..++.++.+.|.++++|||++|++|+++.+.|.+.+++..+...|...
T Consensus 810 lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~ 889 (1228)
T KOG0055|consen 810 LALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGL 889 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888999998888889899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 010471 353 AYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP 432 (510)
Q Consensus 353 ~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~ 432 (510)
+.+.....++.+..+...+++|+|++++.+|.+++.+++-.......-...+.......+++.++..|+.++++++|++|
T Consensus 890 i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~ 969 (1228)
T KOG0055|consen 890 ISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKP 969 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999988765544444445566667788999999999999999999998
Q ss_pred CCCCC-CCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 433 SNQFL-SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 433 e~~~~-~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
..+.. +.+...+..+|+|+|+||+|+||.||+.+||+|+||+|++||++||||||||||||++.||.|||||++|.|.
T Consensus 970 ~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~ 1048 (1228)
T KOG0055|consen 970 TIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVK 1048 (1228)
T ss_pred CCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence 54422 2233345678999999999999999999999999999999999999999999999999999999999999984
No 8
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=6e-50 Score=448.39 Aligned_cols=416 Identities=18% Similarity=0.242 Sum_probs=345.7
Q ss_pred HHHhcCCCcccccCCCcccCCCCCCCcchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc-hhh
Q 010471 88 IRQVFPGGSWWNLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-REE 166 (510)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~-~~~ 166 (510)
+.+.|. +..+.++|+++++....++ ..+++++++++++++.+..+++++++..++.++.|+++...++... ..+
T Consensus 115 ~~~~~~-g~~l~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~ 189 (710)
T TIGR03796 115 FDESFT-GVVLTFEPGPEFQKGGRKP----SLLRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR 189 (710)
T ss_pred HHhhCC-CeEEEEEECccccccCcCc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 344454 4556677776654322222 3456778888999999999999999999999999999887775432 112
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHH
Q 010471 167 AMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIG 246 (510)
Q Consensus 167 ~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~ 246 (510)
...+......+.++.++..++.+++.++....+.++..++|.++|+|++++|+++|+++++||+++|+++| +.+++++.
T Consensus 190 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~ 268 (710)
T TIGR03796 190 QDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLS 268 (710)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHH
Confidence 11111111122233445667788889999999999999999999999999999999999999999999977 78999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHh
Q 010471 247 NDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVY 326 (510)
Q Consensus 247 ~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f 326 (510)
..+..++..++.+++++++|+.++|+++++.++.+++..++...+.+..++..++.++..++.++.+.|+++|+++||++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~ 348 (710)
T TIGR03796 269 GQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKAS 348 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHc
Confidence 88888888999999999999999999999999999988888888888888888888888899999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHH
Q 010471 327 GTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWR 406 (510)
Q Consensus 327 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~ 406 (510)
+.|+.+.++|++..++..+...+.....+....+..++..+..++++++|++++.+|++|+|+++++..+...+..|+..
T Consensus 349 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~ 428 (710)
T TIGR03796 349 GLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNN 428 (710)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888776666666777777778888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC----C-CccC-CCccccEEEEeeeEECCCCCCCCccccceEEeeCCCE
Q 010471 407 MVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS----E-GVKL-QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEV 480 (510)
Q Consensus 407 l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~----~-~~~~-~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~ 480 (510)
+...+..+.++..+.+|+.++++.++|.+... . ...+ ....+.|+|+||+|+|++. ++++|+|+||+|++||+
T Consensus 429 l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~ 507 (710)
T TIGR03796 429 LVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQR 507 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCE
Confidence 99999999999999999999998876543211 0 0111 2235789999999999864 36799999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 481 VAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 481 vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
+||||+||||||||+|+|+|+|+|++|+|+
T Consensus 508 vaIvG~sGsGKSTLlklL~gl~~p~~G~I~ 537 (710)
T TIGR03796 508 VALVGGSGSGKSTIAKLVAGLYQPWSGEIL 537 (710)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 999999999999999999999999999984
No 9
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.4e-49 Score=443.63 Aligned_cols=387 Identities=20% Similarity=0.226 Sum_probs=329.3
Q ss_pred HHHHHHh-hhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 120 LSRMWNL-IGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-REEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSI 197 (510)
Q Consensus 120 l~~l~~~-~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~ 197 (510)
+++++++ ++++++.+...++++++..++.++.|+++...++... ..+...+......+.++.++..++.+++.+....
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (686)
T TIGR03797 123 LRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLR 202 (686)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555 6788999999999999999999999998887775432 1221222111222233444566778888899999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 010471 198 ANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSA 277 (510)
Q Consensus 198 ~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~ 277 (510)
.+.++..++|.++|+|++++|++||+++++||+++|++ |++.+++.+...+...+......++++++|+.++|++++++
T Consensus 203 ~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~ 281 (686)
T TIGR03797 203 LETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVA 281 (686)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 89999998888777777777778888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 278 LLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLW 357 (510)
Q Consensus 278 li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (510)
+++.++..++..++.+..++..++.++..++.++.+.|+++|+++||+++.|+++.++|++..++..+...+........
T Consensus 282 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (686)
T TIGR03797 282 VALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLL 361 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888887788888888888888888999999999999999999999999999999999999999888887776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 010471 358 NMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL 437 (510)
Q Consensus 358 ~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~ 437 (510)
.....++..+..++++++|++++.+|++|+|+++++..+..++..|+..+...+.++.++..+.+|+.++++.++|.+.
T Consensus 362 ~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~- 440 (686)
T TIGR03797 362 TVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE- 440 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc-
Confidence 6777777778888889999999999999999999999999999999999999999999999999999999987665331
Q ss_pred CCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 438 SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 438 ~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
+...+....++|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+|||+|+|+|++|+|+
T Consensus 441 -~~~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~ 511 (686)
T TIGR03797 441 -AKTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVF 511 (686)
T ss_pred -CcCCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE
Confidence 111222345689999999999754 36799999999999999999999999999999999999999999984
No 10
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.8e-49 Score=442.99 Aligned_cols=413 Identities=19% Similarity=0.224 Sum_probs=341.6
Q ss_pred HHHhcCCCcccccCCCcccCCCCCCCcchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc-hhh
Q 010471 88 IRQVFPGGSWWNLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-REE 166 (510)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~-~~~ 166 (510)
+.+.|. +..+.++|++ +++ + ++. ..+++++++++++++.+...++++++..++.++.|+++...++... ..+
T Consensus 102 ~~~~~~-g~~l~~~~~~-~~~-~-~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~ 174 (694)
T TIGR01846 102 LEALWS-GTVILLATRS-VAG-K-ALK---FGFSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG 174 (694)
T ss_pred HHhhCC-CeEEEEecCc-ccc-c-ccc---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 344554 4556667654 222 1 111 3466788888899999999999999999999999998887775432 222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHH
Q 010471 167 AMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIG 246 (510)
Q Consensus 167 ~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~ 246 (510)
...+......++++.++..++.+++.++....+.++..++|.++|+|++++|+.||+++++||+++|+ +|++.+++++.
T Consensus 175 ~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~ 253 (694)
T TIGR01846 175 LSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLT 253 (694)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHH
Confidence 11121112222333445667788899999999999999999999999999999999999999999999 49999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHh
Q 010471 247 NDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVY 326 (510)
Q Consensus 247 ~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f 326 (510)
..+..++..++..++.++++++++|+++++++++.|++.++...+.++.++..++..+..++.++.+.|+++|+++||++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~ 333 (694)
T TIGR01846 254 GSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKAT 333 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHc
Confidence 77777777777777788899999999999999999988888888877777777778888889999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHH
Q 010471 327 GTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWR 406 (510)
Q Consensus 327 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~ 406 (510)
|.|+++.++|++..+++.+...+..+..+.......++..+..++++++|++++.+|++|+|+++++..+...+..|+..
T Consensus 334 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~ 413 (694)
T TIGR01846 334 ATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLR 413 (694)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888877766666777777778888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcC
Q 010471 407 MVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGL 486 (510)
Q Consensus 407 l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~ 486 (510)
+.+.+..+.++..+.+|+.++++.+++.+.. +....+...+.|+|+||+|+|+++ ++++|+|+||+|++||++||||+
T Consensus 414 l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~ 491 (694)
T TIGR01846 414 LAQLWQDFQQTGIALERLGDILNSPTEPRSA-GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGP 491 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECC
Confidence 9999999999999999999999887654311 111122345789999999999754 35799999999999999999999
Q ss_pred CCCcHHHHHHHHhcccCCCCceeC
Q 010471 487 SGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 487 SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
||||||||+|+|+|+|+|++|+|+
T Consensus 492 sGsGKSTL~~ll~g~~~p~~G~I~ 515 (694)
T TIGR01846 492 SGSGKSTLTKLLQRLYTPQHGQVL 515 (694)
T ss_pred CCCCHHHHHHHHhcCCCCCCceEE
Confidence 999999999999999999999984
No 11
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5.3e-49 Score=429.95 Aligned_cols=388 Identities=19% Similarity=0.195 Sum_probs=321.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc-hhhh--HHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 010471 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-REEA--MVFHK--SSRFLVLLCVTSGIFSGLRSGC 194 (510)
Q Consensus 120 l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~-~~~~--~~~~~--~~~~l~~l~~~~~~~~~i~~~~ 194 (510)
+++++++++++++.++.+++++++.+++.+..|.+++..++... .++. ..+.. ....+.++.++..++.++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (574)
T PRK11160 4 LLPFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLV 83 (574)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999999999999988777775321 1110 00110 1112223445566777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 010471 195 FSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLT 274 (510)
Q Consensus 195 ~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~ 274 (510)
....+.++..++|.++|+|++++|+.+|++.++|++++|+++|++.+++++...++.++..++.+++++++|+++||+++
T Consensus 84 ~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 163 (574)
T PRK11160 84 SHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLA 163 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 275 LSALLICSFLSI-IVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMA 353 (510)
Q Consensus 275 li~li~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~ 353 (510)
+++++++|+..+ +..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+++.++|++..+++.+...+..+.
T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 243 (574)
T PRK11160 164 LTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANL 243 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888776654 3456667777778888888999999999999999999999999999999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 010471 354 YGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWL-IYATWRMVDNLSSLLQSIGATEKVFQLIDLLP 432 (510)
Q Consensus 354 ~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~ 432 (510)
.+.......++..+..++++++|+++ .+|.+++|.++++..|.... ..++..+...+..+.++..+.+|+.++++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~ 322 (574)
T PRK11160 244 TGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKP 322 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 77766777777777777788899888 58999999999988776443 35777788888999999999999999999876
Q ss_pred CCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 433 SNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 433 e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
+.+.+++ .......++|+|+||+|+|+++ ++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|+
T Consensus 323 ~~~~~~~-~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~ 398 (574)
T PRK11160 323 EVTFPTT-STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEIL 398 (574)
T ss_pred CCCCCcc-cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 5332111 1112234689999999999854 25799999999999999999999999999999999999999999984
No 12
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5.6e-49 Score=431.89 Aligned_cols=389 Identities=13% Similarity=0.130 Sum_probs=315.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 118 IALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ--REEAMVFHKSSRFLVLLCVTSGIFSGLRSGCF 195 (510)
Q Consensus 118 ~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~--~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~ 195 (510)
+.+++++++++++++.++.++++.++.+++.+..|+++...++... ..+..........+.++.++..++.+++.+..
T Consensus 8 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (588)
T PRK11174 8 ELTRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVG 87 (588)
T ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999999999999999999999999998887775421 11111111112223334455667778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010471 196 SIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTL 275 (510)
Q Consensus 196 ~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~l 275 (510)
...+.++..++|.++|+|++++|+++|+++++|++++|+++|++++++.+...+..++..++.+++++++|++++|++++
T Consensus 88 ~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 167 (588)
T PRK11174 88 FKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGL 167 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999988999998988899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 276 SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG 355 (510)
Q Consensus 276 i~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (510)
++++..|+..++...+.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..+++.+...+..+..+
T Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (588)
T PRK11174 168 ILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAF 247 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888888888888899999999999999999999999999999999999999988877765555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQL---------TKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQ 426 (510)
Q Consensus 356 ~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l---------~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~e 426 (510)
.......++..+..+++++++++.+ .|.+++|++ ++++.+...+..|+..+...+..+.++..+.+|+.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ 326 (588)
T PRK11174 248 LSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVT 326 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555445555565544 388888764 222355667788999999999999999999999999
Q ss_pred hhcCCCCCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC
Q 010471 427 LIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506 (510)
Q Consensus 427 il~~~~e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s 506 (510)
+++.++++....+...+....++|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||++||+|+| |++
T Consensus 327 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~--~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~ 403 (588)
T PRK11174 327 FLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDG--KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQ 403 (588)
T ss_pred HHcCCCcccCCCccccCCCCCceEEEEeeEEeccCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCC
Confidence 998765432111111111234579999999988642 57999999999999999999999999999999999999 999
Q ss_pred ceeC
Q 010471 507 GQVC 510 (510)
Q Consensus 507 G~I~ 510 (510)
|+|+
T Consensus 404 G~I~ 407 (588)
T PRK11174 404 GSLK 407 (588)
T ss_pred cEEE
Confidence 9984
No 13
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=6.1e-48 Score=422.29 Aligned_cols=391 Identities=16% Similarity=0.199 Sum_probs=320.2
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 116 VWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCF 195 (510)
Q Consensus 116 ~~~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~ 195 (510)
.++.+++++++++++++.++..++++++.+++.++.|++++..++.....+.. .. .....++..+...+..++.....
T Consensus 3 ~~~~~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~ 80 (585)
T TIGR01192 3 LFQVYVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSDV-LP-TLALWAGFGVFNTIAYVLVAREA 80 (585)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH-HH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888899999999999999999999999999999888877543222111 10 01111111222233334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010471 196 SIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTL 275 (510)
Q Consensus 196 ~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~l 275 (510)
.....++..++|.++|++++++|+++|+++++|++++|+++|++.+++.+...+..++..++..++++++|+.+||.+++
T Consensus 81 ~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 160 (585)
T TIGR01192 81 DRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSI 160 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666777889999999999999999999999999999999999988888888888888888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 276 SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG 355 (510)
Q Consensus 276 i~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (510)
++++++|++.++...+.++.++..++.++..++.++.+.|+++|+++||+|+.|+.+.+++++..+++.+...+..+..+
T Consensus 161 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (585)
T TIGR01192 161 VLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWA 240 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888888888888888999999999999999999999999999999999998888777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 010471 356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ 435 (510)
Q Consensus 356 ~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~ 435 (510)
.......++..+..++++++|++++.+|++++|+++++..+...+..|+..+.+.+..+.++..+.+|+.++++.+++.+
T Consensus 241 ~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 320 (585)
T TIGR01192 241 LASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQRE 320 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 66666666666677788899999999999999999999999999999999999999999999999999999998765432
Q ss_pred CCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 436 FLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 436 ~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
+..+........+.|+++||+|+|+++ +++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|+
T Consensus 321 ~~~~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 393 (585)
T TIGR01192 321 EPADAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQIL 393 (585)
T ss_pred CCccCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEE
Confidence 111111112234579999999999753 4699999999999999999999999999999999999999999984
No 14
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=6.6e-48 Score=423.00 Aligned_cols=393 Identities=23% Similarity=0.358 Sum_probs=330.8
Q ss_pred chHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 115 TVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-EAMVFHKSSRFLVLLCVTSGIFSGLRSG 193 (510)
Q Consensus 115 ~~~~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~i~~~ 193 (510)
+.|+.+++++++++++++.++.++++.++.+++....|.++...++..... +...+......++++.++..++.+++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 87 (582)
T PRK11176 8 STWQTFRRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSY 87 (582)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888899999999888888888887877777777766665432211 1111111111122344455666777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 010471 194 CFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPL 273 (510)
Q Consensus 194 ~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l 273 (510)
.....+.++..++|.++|++++++|+++|++.++|++++|+++|++.+++.+...+..++..++.++++++++++++|.+
T Consensus 88 ~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 167 (582)
T PRK11176 88 CISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQL 167 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999999999999999988888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 274 TLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMA 353 (510)
Q Consensus 274 ~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~ 353 (510)
++++++.+|+..++...+.++.++..++.++..++.++.+.|.++|++++|+++.|+++.++|++..+++.+...+..+.
T Consensus 168 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (582)
T PRK11176 168 SLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSA 247 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888878888888888888888999999999999999999999999999999999999999998888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 010471 354 YGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS 433 (510)
Q Consensus 354 ~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e 433 (510)
.........++..+..++++++|++.+.+|++|+|+++++..+..++..|+..+...+..+.++..+.+|+.++++.+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~ 327 (582)
T PRK11176 248 SSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQE 327 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 76666777777777777888999999999999999999999999999999999999999999999999999999987655
Q ss_pred CCCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 434 NQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 434 ~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.+. +....++..++|+|+||+|+|+++ ++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|+
T Consensus 328 ~~~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~ 401 (582)
T PRK11176 328 KDE--GKRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL 401 (582)
T ss_pred CCC--CCcCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEE
Confidence 321 111122234679999999999864 35799999999999999999999999999999999999999999984
No 15
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=8.5e-48 Score=417.44 Aligned_cols=378 Identities=17% Similarity=0.196 Sum_probs=313.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc-h-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 130 DKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-R-EEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLR 207 (510)
Q Consensus 130 ~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~-~-~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~~~lr 207 (510)
+|+.+..++++.++.+++.+..|++++..++... . .+...+......+.++.++..++.+++.+.......++..++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 80 (529)
T TIGR02857 1 ARRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLR 80 (529)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888889999999889998887775431 1 1111111112223344455667788888888899999999999
Q ss_pred HHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 010471 208 ETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSII 287 (510)
Q Consensus 208 ~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~l~~~~ 287 (510)
.++|++++++|+++|++.++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|.+++++++..|+..++
T Consensus 81 ~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~ 160 (529)
T TIGR02857 81 ERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIF 160 (529)
T ss_pred HHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888888888888888899999999999999999888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 288 VSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRS 367 (510)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 367 (510)
...+.++.++..++.++..++.++.+.|+++|+++||+|+.|+++.++|++..+++.+...+..+..........++..+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (529)
T TIGR02857 161 MILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATL 240 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777788888888999999999999999999999999999999999999888877766665555666666655
Q ss_pred HHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccCCCcc
Q 010471 368 TQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLM 447 (510)
Q Consensus 368 ~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~~~~~~ 447 (510)
..++++.++++.+.+|++++|.++++..+...+..|+..+...+..+.++..+.+|+.++++.++++. . ....+....
T Consensus 241 ~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~-~-~~~~~~~~~ 318 (529)
T TIGR02857 241 SVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLA-G-KAPVTAAPA 318 (529)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC-C-CcCCCCCCC
Confidence 65666667788888999999999999999999999999999999999999999999999998554322 1 111111123
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
++|+|+||+|+||++ ++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|+
T Consensus 319 ~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~ 380 (529)
T TIGR02857 319 PSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA 380 (529)
T ss_pred CeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 579999999999864 35799999999999999999999999999999999999999999984
No 16
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=4.3e-47 Score=415.76 Aligned_cols=387 Identities=27% Similarity=0.399 Sum_probs=333.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 121 SRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-EAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIAN 199 (510)
Q Consensus 121 ~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~ 199 (510)
++++++.+++++.++.++++.++.+++....|+++...++..... ....+......+.++.++..++.+++.+......
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 82 (571)
T TIGR02203 3 RRLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVS 82 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888999999999999999999888898877666433211 1111211122233445556677788888899999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 010471 200 IVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALL 279 (510)
Q Consensus 200 ~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li 279 (510)
.++...+|..+++++++.|+++|++.+.|++.+|+++|++.+++.+...+..++..+..++++++++++++|.++++.++
T Consensus 83 ~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~ 162 (571)
T TIGR02203 83 NKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVV 162 (571)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 280 ICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNM 359 (510)
Q Consensus 280 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (510)
..|+..++..++.++.++..++.++..++.++.+.|.++|++++|.++.|+++.++|++..++..+...+..+..+....
T Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (571)
T TIGR02203 163 MLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSP 242 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888888888888999999999999999999999999999999999999999999988888777777677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 010471 360 SFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE 439 (510)
Q Consensus 360 ~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~ 439 (510)
+..++..+..++++++|++++.+|.+|+|.++++..+..++..|+..+...+..+.++..+.+|+.++++.+++++..
T Consensus 243 ~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-- 320 (571)
T TIGR02203 243 ITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG-- 320 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC--
Confidence 777777777888899999999999999999999999999999999999999999999999999999999876653311
Q ss_pred CccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 440 GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 440 ~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.....+..++|+++||+|+|+++ ++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|+
T Consensus 321 ~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~ 390 (571)
T TIGR02203 321 TRAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL 390 (571)
T ss_pred CCCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEE
Confidence 11112234689999999999864 35799999999999999999999999999999999999999999984
No 17
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=7.4e-47 Score=414.24 Aligned_cols=393 Identities=26% Similarity=0.413 Sum_probs=327.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 118 IALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-REEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFS 196 (510)
Q Consensus 118 ~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~ 196 (510)
+.+++++++++++++.+...+++.++.+++.++.|+++...++... ..+...+.....+.+++.++..+..+++.+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (576)
T TIGR02204 4 RPLAALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVT 83 (576)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466778888889998888999999999999999998877775422 222111222222233333445556777888888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 010471 197 IANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLS 276 (510)
Q Consensus 197 ~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li 276 (510)
.+..++...+|.+++++++++|.++|++.+.|++++|+++|++.+++.+...+..++..++.+++++++++.++|.++++
T Consensus 84 ~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (576)
T TIGR02204 84 WLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSL 163 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 88999999999999999999999999999999999999999999999988888888888988999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 277 ALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGL 356 (510)
Q Consensus 277 ~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (510)
+++..|+..++..++.++.++..+..++..++.++.+.|.++|+++||.++.|+++.++|++..++..+...+.......
T Consensus 164 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (576)
T TIGR02204 164 VLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRAL 243 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888777777888888888888888999999999999999999999999999999999999888877776655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 010471 357 WNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQF 436 (510)
Q Consensus 357 ~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~ 436 (510)
......++..+..++++++|++++.+|.+++|+++++..+..++..|+..+...+..+.++..+.+|+.++++.+++.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 323 (576)
T TIGR02204 244 LTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKA 323 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCC
Confidence 45555555556667778899999999999999999999999999999999999999999999999999999987654221
Q ss_pred CCCCc-cCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 437 LSEGV-KLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 437 ~~~~~-~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
..... .+.+..+.|+|+||+|+||+++++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|+
T Consensus 324 ~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~ 398 (576)
T TIGR02204 324 PAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRIL 398 (576)
T ss_pred CCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE
Confidence 11111 111234579999999999864446799999999999999999999999999999999999999999984
No 18
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.6e-46 Score=410.53 Aligned_cols=385 Identities=29% Similarity=0.485 Sum_probs=327.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 119 ALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIA 198 (510)
Q Consensus 119 ~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~ 198 (510)
.+++++.+.+ ++ .+..+.+++++.+++.+..|.++...++... .+.........++.++.++..++.++..+...+.
T Consensus 3 ~~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 79 (567)
T COG1132 3 LLRRLLKYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALL-ADLGELLELLLLLLLLALLGGVLRALQSYLGSRL 79 (567)
T ss_pred hHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666 77 8888888899999999888888776664433 1111122222233344445666777777777788
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 010471 199 NIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSAL 278 (510)
Q Consensus 199 ~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~l 278 (510)
+.++..++|.++|++++++|+++|++.++|++++|+++|++.+++.+......+...++.+++.+++++..+|+++++.+
T Consensus 80 ~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 159 (567)
T COG1132 80 GQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILL 159 (567)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999888666666788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 279 LICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWN 358 (510)
Q Consensus 279 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (510)
+..|++.+....+.++.++..+..++..++.++.+.|+++|++++|+|+.++.+.+++++..++..+...+.....+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (567)
T COG1132 160 LILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLA 239 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888777888888899999999999999999999999999999999999999999888877776676666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 010471 359 MSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 438 (510)
Q Consensus 359 ~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~ 438 (510)
.....+......+++++|++.+..|.+++|++++|+.+..++..|+..+......+.++..+.+|++++++.+++..+..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~ 319 (567)
T COG1132 240 PLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPP 319 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCC
Confidence 77788888888899999999999999999999999999999999999999999999999999999999999877643222
Q ss_pred CCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 439 EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 439 ~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.. .....++|+|+||+|+|++ ++++|+|+||+|+|||++|||||||||||||++||+|||+|++|+|+
T Consensus 320 ~~--~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~ 387 (567)
T COG1132 320 DP--LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEIL 387 (567)
T ss_pred CC--CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEE
Confidence 11 2334578999999999985 35799999999999999999999999999999999999999999985
No 19
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=9e-47 Score=444.66 Aligned_cols=383 Identities=19% Similarity=0.208 Sum_probs=305.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhh-hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 119 ALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREE-AM-VFHKSSRFLVLLCVTSGIFSGLRSGCFS 196 (510)
Q Consensus 119 ~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~-~~-~~~~~~~~l~~l~~~~~~~~~i~~~~~~ 196 (510)
.+++++++++++++.++.+++++++.+.+....|+++...++.....+ .. .......++++++++..++.+++.++..
T Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~ 891 (1466)
T PTZ00265 812 NLRIVYREIFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNN 891 (1466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888899888999998889888888888888777764321111 00 0111122333445566777889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccc--cCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 010471 197 IANIVLVKRLRETLYSALLFQDVYFFDT--EAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLT 274 (510)
Q Consensus 197 ~~~~~i~~~lr~~l~~~ll~lp~~ff~~--~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~ 274 (510)
.+++++..++|.++|++++++|++||++ +++|++++|+++|++.+++.+...+..++..++.++++++++++++|.++
T Consensus 892 ~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~ 971 (1466)
T PTZ00265 892 VIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVA 971 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999986 78999999999999999999998899999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHH
Q 010471 275 LSALLICSFLSIIVSVYGQYQKRAS-VL-----------------TQECNAHANNVAQETLCMMRTVRVYGTEEKELGRY 336 (510)
Q Consensus 275 li~li~~~l~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~ 336 (510)
++++++.+ ++...+.++.+... ++ .++..++.+..+.|+++|++|||+|+.|+++.++|
T Consensus 972 l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~ 1048 (1466)
T PTZ00265 972 AVLTGTYF---IFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLI 1048 (1466)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHH
Confidence 87654433 33333333222111 11 12335567889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 337 KIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQ 416 (510)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~ 416 (510)
++..++..+...+.....+....+...+..+..++++|+|++++..|.+++|++++++.+......++..++..+..+.+
T Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 1128 (1466)
T PTZ00265 1049 EKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSEN 1128 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888887777777777777777778888999999999999999999999876655444567778888999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCC-CCcc---CCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHH
Q 010471 417 SIGATEKVFQLIDLLPSNQFLS-EGVK---LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKS 492 (510)
Q Consensus 417 ~~~a~~rl~eil~~~~e~~~~~-~~~~---~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKS 492 (510)
+..+.+|++++++.+++.+..+ ++.. +....++|+|+||+|+||++++++||+|+||+|++||+|||||+||||||
T Consensus 1129 a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKS 1208 (1466)
T PTZ00265 1129 AKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKS 1208 (1466)
T ss_pred HHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHH
Confidence 9999999999999876432111 1111 12345789999999999977666899999999999999999999999999
Q ss_pred HHHHHHhcccCC
Q 010471 493 TFVNLLLRLYEP 504 (510)
Q Consensus 493 TL~kLL~g~y~p 504 (510)
||++||+|||+|
T Consensus 1209 Tl~~LL~r~ydp 1220 (1466)
T PTZ00265 1209 TVMSLLMRFYDL 1220 (1466)
T ss_pred HHHHHHHHhCCC
Confidence 999999999999
No 20
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=8.2e-47 Score=411.15 Aligned_cols=384 Identities=16% Similarity=0.103 Sum_probs=302.9
Q ss_pred HHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 119 ALSRMWNLIG-RDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSI 197 (510)
Q Consensus 119 ~l~~l~~~~~-~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~ 197 (510)
..++++++++ ++|+.++.+++++++.+++.+..|.++...++.....+.. ....+.++.++..++.+++.++...
T Consensus 4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (555)
T TIGR01194 4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLGQG----SLFSFGGLCLLALLFRIGADIFPAY 79 (555)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccch----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888 9999999999999999999988888776665422111110 1112333444556677888888888
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 010471 198 ANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSA 277 (510)
Q Consensus 198 ~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~ 277 (510)
.+.++..++|.++|+|++++|+.+|++.++|++++|+++|++.+++++.. +..++..++.+++++++|++++|.+++++
T Consensus 80 ~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~ 158 (555)
T TIGR01194 80 AGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAIT 158 (555)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999998865 66777888888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 278 LLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEE--KELGRYKIWLEKLAFIRIRESMAYG 355 (510)
Q Consensus 278 li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~--~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (510)
++.+|+.+++.....++.++..++.++..++.++.+.|.++|++++|+|+.++ ++.+++++..+++.+...+......
T Consensus 159 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
T TIGR01194 159 ISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFI 238 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 88888877776666666677777778888999999999999999999999954 5678888888888877666544433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-
Q 010471 356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSN- 434 (510)
Q Consensus 356 ~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~- 434 (510)
.......++..+...+.+++|++. |.+++|++++|+.|...+..|+..+++.+..+.++..+.+|+.++++.++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~ 315 (555)
T TIGR01194 239 AAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPE 315 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 333333333333333334444443 7899999999999999999999999999999999999999999998642211
Q ss_pred CC--CCC-Cc----cCCCccccEEEEeeeEECCCCC--CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471 435 QF--LSE-GV----KLQRLMGHVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (510)
Q Consensus 435 ~~--~~~-~~----~~~~~~~~I~f~nVsF~Y~~~~--~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~ 505 (510)
.. .++ .. .+....++|+|+||+|+|++.+ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~ 395 (555)
T TIGR01194 316 PELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ 395 (555)
T ss_pred ccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 10 011 00 1112246899999999998532 236999999999999999999999999999999999999999
Q ss_pred CceeC
Q 010471 506 DGQVC 510 (510)
Q Consensus 506 sG~I~ 510 (510)
+|+|+
T Consensus 396 ~G~i~ 400 (555)
T TIGR01194 396 EGEIL 400 (555)
T ss_pred CcEEE
Confidence 99984
No 21
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4.5e-46 Score=409.09 Aligned_cols=390 Identities=22% Similarity=0.268 Sum_probs=315.6
Q ss_pred chHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhch-hhhHHHH--HHHHHHHHHHHHHHHHHHHH
Q 010471 115 TVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR-EEAMVFH--KSSRFLVLLCVTSGIFSGLR 191 (510)
Q Consensus 115 ~~~~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~-~~~~~~~--~~~~~l~~l~~~~~~~~~i~ 191 (510)
.+|+.++++..+.+++++.+...+++.++.+++.+..|.++...++.... .+..... ....+++++.++..++.+++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (592)
T PRK10790 6 QLWPTLKRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQ 85 (592)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888899988888899999999999999988777754321 1211110 00111222233455567778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010471 192 SGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSW 271 (510)
Q Consensus 192 ~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~ 271 (510)
.+.......++..++|.++|+++++.|+++|++.++|++++|+++|++.+++.+...+..++..+..++++++++++++|
T Consensus 86 ~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (592)
T PRK10790 86 SLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDW 165 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999999999999999999999999999888888898888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q 010471 272 PLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRES 351 (510)
Q Consensus 272 ~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~ 351 (510)
.++++.+++.|+++++...+.++.++..++.++..++.++.+.|+++|+++||+|+.|+++.+++++..++..+...+..
T Consensus 166 ~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (592)
T PRK10790 166 RMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTL 245 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888877777777777777777777888888999999999999999999999999999999988888776665
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 010471 352 MAYGLW-NMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL 430 (510)
Q Consensus 352 ~~~~~~-~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~ 430 (510)
+..+.. .....++..+..++++++++. +..|.+++|.+++++.|...+..|+..+...+..+.++..+.+|+.++++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~ 324 (592)
T PRK10790 246 RLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDG 324 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444432 233333333333333344444 689999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 431 LPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 431 ~~e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
++++.. .. ......++|+|+||+|+||++ +++|+|+||+|++||++||||+||||||||+|+|+|+|+|++|+|+
T Consensus 325 ~~~~~~--~~-~~~~~~~~i~~~~v~f~y~~~--~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 399 (592)
T PRK10790 325 PRQQYG--ND-DRPLQSGRIDIDNVSFAYRDD--NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR 399 (592)
T ss_pred CCccCC--CC-ccCCCCCeEEEEEEEEEeCCC--CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE
Confidence 654221 11 112234679999999999842 5799999999999999999999999999999999999999999984
No 22
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.7e-46 Score=442.36 Aligned_cols=388 Identities=20% Similarity=0.264 Sum_probs=325.2
Q ss_pred HHHHHHhh-hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 120 LSRMWNLI-GRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIA 198 (510)
Q Consensus 120 l~~l~~~~-~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~ 198 (510)
+.++++|. +++++.++.+++++++.+++....|.+++..++.....+. .......++++.++..++.+++.++...+
T Consensus 47 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 124 (1466)
T PTZ00265 47 FFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGEN--VNDIIFSLVLIGIFQFILSFISSFCMDVV 124 (1466)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666665 5678888999999999998888888887777754321111 11112233444555667788999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 010471 199 NIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSAL 278 (510)
Q Consensus 199 ~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~l 278 (510)
+.++..++|.++|++++++|++|||+...|++++|+++|++.+++.++..+..++..++++++.++++++++|+|+++++
T Consensus 125 ~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l 204 (1466)
T PTZ00265 125 TTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCIT 204 (1466)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 279 LICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWN 358 (510)
Q Consensus 279 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (510)
+.+|+++++..++.++.++..+..++..++.++.+.|+++|+++||+|+.|+++.++|++..+++.+...+.....+...
T Consensus 205 ~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~ 284 (1466)
T PTZ00265 205 CVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHI 284 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888888888888888889999999999999999999999999999999999999988888877777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC--------ccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 010471 359 MSFITLYRSTQVMAVLLGGMSIMIG--------QVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL 430 (510)
Q Consensus 359 ~~~~~l~~~~~v~~l~~g~~lv~~g--------~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~ 430 (510)
....++..+..++++|+|++++.+| .+++|+++++..+.......+..+...+..+.++..|++|++++++.
T Consensus 285 ~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~ 364 (1466)
T PTZ00265 285 GMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINR 364 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6777777777888899999999986 57889988876665544445556666788899999999999999998
Q ss_pred CCCCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 431 LPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 431 ~~e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
+++.+...++...+ ..++|+|+||+|+||++++.++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|+
T Consensus 365 ~~~~~~~~~~~~~~-~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 443 (1466)
T PTZ00265 365 KPLVENNDDGKKLK-DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDII 443 (1466)
T ss_pred CCCCCCCCCCccCC-CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEE
Confidence 77643211211112 22479999999999876555799999999999999999999999999999999999999999984
No 23
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=7e-46 Score=407.12 Aligned_cols=390 Identities=16% Similarity=0.201 Sum_probs=316.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 117 WIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFS 196 (510)
Q Consensus 117 ~~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~ 196 (510)
.+.++++++++++++..+...+++.++..++.++.|+++...++...... . .......+.++.++..+..++......
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (588)
T PRK13657 4 FRLYARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG-D-IFPLLAAWAGFGLFNIIAGVLVARHAD 81 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-c-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888889998889999999999999999988777775432211 1 111111111112222223333444444
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 010471 197 IANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLS 276 (510)
Q Consensus 197 ~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li 276 (510)
....++..+++.++|++++++|+.+|++.++|++++|+++|++++.+.+...+..++..++..++.+++++.++|+++++
T Consensus 82 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 161 (588)
T PRK13657 82 RLAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLV 161 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777899999999999999999999999999999999998877777777777777888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 277 ALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGL 356 (510)
Q Consensus 277 ~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (510)
++++.++..++...+.++.++..++.++..++.++.+.|.++|++++|.|+.++++.+++++..++..+...+.....+.
T Consensus 162 ~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (588)
T PRK13657 162 LVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWAL 241 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888888878788888888888899999999999999999999999999999999999999888877666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 010471 357 WNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQF 436 (510)
Q Consensus 357 ~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~ 436 (510)
......++..+..++++++|++++.+|++++|+++++..+...+..|+..+...+..+.++..+.+|+.++++.+++.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~ 321 (588)
T PRK13657 242 ASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRD 321 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC
Confidence 66666666677778888999999999999999999999999999999999999999999999999999999987554321
Q ss_pred CCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 437 LSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 437 ~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
..+........+.|+++||+|+||++ +++|+|+|++++|||++||||+||||||||+|+|+|+|+|++|+|+
T Consensus 322 ~~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~ 393 (588)
T PRK13657 322 PPGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL 393 (588)
T ss_pred CCCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 11111112234579999999999853 4699999999999999999999999999999999999999999984
No 24
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=5.9e-46 Score=405.75 Aligned_cols=368 Identities=21% Similarity=0.318 Sum_probs=299.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhchh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 010471 140 SLIVAAVSEITMPRILAEAVFSAQRE--EAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQ 217 (510)
Q Consensus 140 ~~i~~~l~~l~~P~~~~~~i~~~~~~--~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~l 217 (510)
+.++.+++.+..|++++..++..... +...+......++++.++..++.+++.+.......++..++|.++|++++++
T Consensus 3 ~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 82 (569)
T PRK10789 3 LLIIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQ 82 (569)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34555666667888877776543211 1111111111222233344556677777777888999999999999999999
Q ss_pred CcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 218 DVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINL-LTLSWPLTLSALLICSFLSIIVSVYGQYQK 296 (510)
Q Consensus 218 p~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l-~~~s~~l~li~li~~~l~~~~~~~~~~~~~ 296 (510)
|+++|+++++|++++|+++|++.++..+...+..++..++..++.++++ +.++|+++++++++.|++.++...+.++.+
T Consensus 83 ~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~ 162 (569)
T PRK10789 83 HPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLH 162 (569)
T ss_pred CHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887777777777766666666666 589999999999998888888888878877
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 297 RASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLG 376 (510)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g 376 (510)
+..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+..+........+..+..++++++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 242 (569)
T PRK10789 163 ERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGG 242 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888889999999999999999999999999999999999999888888766666665655666666677788899
Q ss_pred HHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccCCCccccEEEEeee
Q 010471 377 GMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNIS 456 (510)
Q Consensus 377 ~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~~~~~~~~I~f~nVs 456 (510)
++++.+|++|+|+++++..|...+..|+..+...+..+.++..+.+|+.++++.+++.+.. ....+...++|+|+||+
T Consensus 243 ~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~--~~~~~~~~~~I~~~~v~ 320 (569)
T PRK10789 243 SWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDG--SEPVPEGRGELDVNIRQ 320 (569)
T ss_pred HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--CCCCCCCCCcEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999876553211 11112234679999999
Q ss_pred EECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 457 FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 457 F~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+
T Consensus 321 ~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~ 373 (569)
T PRK10789 321 FTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIR 373 (569)
T ss_pred EECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEE
Confidence 999853 35799999999999999999999999999999999999999999984
No 25
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.8e-47 Score=425.06 Aligned_cols=334 Identities=29% Similarity=0.414 Sum_probs=298.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 010471 177 LVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNS 256 (510)
Q Consensus 177 l~~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~ 256 (510)
...+.++..+..+++..+..+.+.|...++|.++++++||++++|||++.+|++.+|+++|++.+++.+++.+..++..+
T Consensus 77 ~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~ 156 (1228)
T KOG0055|consen 77 FVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLL 156 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHH
Confidence 33445556667788888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHH
Q 010471 257 LQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRY 336 (510)
Q Consensus 257 ~~~i~~li~l~~~s~~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~ 336 (510)
.++++.+++.|++.|+|+++.+...|++.+....+.+...+...+.++..+++.+.+.|+++++|||.+|+.|+++.++|
T Consensus 157 ~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry 236 (1228)
T KOG0055|consen 157 ATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERY 236 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHH
Confidence 99999999999999999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 337 KIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQ 416 (510)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~ 416 (510)
++.++...+...+...+.++....+.++..+.....+|+|+.++.++..+.|+++..+.....-...+......+..+..
T Consensus 237 ~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~ 316 (1228)
T KOG0055|consen 237 SKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAK 316 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhc
Confidence 99999999999999888888888888888888899999999999999999998766544333333445555667778889
Q ss_pred HHHHHHHHHHhhcCCCCCCCCC-CCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHH
Q 010471 417 SIGATEKVFQLIDLLPSNQFLS-EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFV 495 (510)
Q Consensus 417 ~~~a~~rl~eil~~~~e~~~~~-~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~ 495 (510)
+.+|+.+++|.++..|..+... ++......+|+|+|+||+|+||+||+.++|+|+||+||+||+|||||+|||||||++
T Consensus 317 a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i 396 (1228)
T KOG0055|consen 317 ARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLI 396 (1228)
T ss_pred cccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHH
Confidence 9999999999999988754322 122234467999999999999999988999999999999999999999999999999
Q ss_pred HHHhcccCCCCceeC
Q 010471 496 NLLLRLYEPSDGQVC 510 (510)
Q Consensus 496 kLL~g~y~p~sG~I~ 510 (510)
+||+|||+|++|+|+
T Consensus 397 ~LL~RfydP~~G~V~ 411 (1228)
T KOG0055|consen 397 QLLARFYDPTSGEVL 411 (1228)
T ss_pred HHHHHhcCCCCceEE
Confidence 999999999999984
No 26
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5.9e-45 Score=396.14 Aligned_cols=373 Identities=16% Similarity=0.156 Sum_probs=303.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 128 GRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-REEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRL 206 (510)
Q Consensus 128 ~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~~~l 206 (510)
+++++.++..++++++.+++.+..|+++...++... ..+...+......++++.++..++.+++.+.....+.++..++
T Consensus 2 ~~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (544)
T TIGR01842 2 SKNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGAL 81 (544)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888889999999999999998887776432 1221111111222233344556677888888888999999999
Q ss_pred HHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 010471 207 RETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGN-DINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLS 285 (510)
Q Consensus 207 r~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~-~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~l~~ 285 (510)
|.++|+|++++|+. +.++..+++++|++.+++.+.. .+..++..++ .++.+++++.++|+++++++++.|++.
T Consensus 82 r~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li~l~~~~l~~ 155 (544)
T TIGR01842 82 NQPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPW-MPIYLLVCFLLHPWIGILALGGAVVLV 155 (544)
T ss_pred HHHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999984 3467788999999999998766 4555554444 344556789999999999988888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 286 IIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLY 365 (510)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 365 (510)
++..++.+..++..++.++..++.++.+.|+++|+++||+|+.|+.+.++|++..+++.+...+.....+........+.
T Consensus 156 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (544)
T TIGR01842 156 GLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFR 235 (544)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666777777777888888999999999999999999999999999999999999998888777666666666666666
Q ss_pred HHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccCCC
Q 010471 366 RSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQR 445 (510)
Q Consensus 366 ~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~~~~ 445 (510)
....++++++|++++.+|++|+|++++++.+...+..|+..+...+..+.++..+.+|+.++++.+++.+. .. ..+.
T Consensus 236 ~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~--~~-~~~~ 312 (544)
T TIGR01842 236 IVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP--AM-PLPE 312 (544)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC--CC-CCCC
Confidence 66777788999999999999999999999999999999999999999999999999999999987655321 11 1122
Q ss_pred ccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 446 ~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.++.|+++||+|+||++ ++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|+
T Consensus 313 ~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 376 (544)
T TIGR01842 313 PEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR 376 (544)
T ss_pred CCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 34679999999999853 35799999999999999999999999999999999999999999873
No 27
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.8e-42 Score=412.03 Aligned_cols=368 Identities=17% Similarity=0.171 Sum_probs=283.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 010471 139 ASLIVAAVSEITMPRILAEAVFSAQ-REEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQ 217 (510)
Q Consensus 139 l~~i~~~l~~l~~P~~~~~~i~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~l 217 (510)
++.++..++.+..|+++..+.+... ..+............++.++..++.+++.++....+.+...++|.+++++++++
T Consensus 972 ~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~ 1051 (1522)
T TIGR00957 972 FLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRS 1051 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3334445555566766665553211 111000001112233344455566677777778888999999999999999999
Q ss_pred CcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 218 DVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKR 297 (510)
Q Consensus 218 p~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~l~~~~~~~~~~~~~~ 297 (510)
|++||++.++|++++|+++|++.+++.+...+..++..++.+++.++++++.+|.++++++++++++.++.+++.+..++
T Consensus 1052 p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 1131 (1522)
T TIGR00957 1052 PMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQ 1131 (1522)
T ss_pred ChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999899988777766666666666777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 298 ASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGG 377 (510)
Q Consensus 298 ~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~ 377 (510)
..+...+..+...+.+.|+++|++|||+|+.|+++.+++.+..+...+..........+......++ ..++++++++
T Consensus 1132 ~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 1208 (1522)
T TIGR00957 1132 LKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECV---GNCIVLFAAL 1208 (1522)
T ss_pred HHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 7777777888999999999999999999999999888888887777665544332222222222222 2234445555
Q ss_pred HHHh-cCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC-ccC--CCccccEEEE
Q 010471 378 MSIM-IGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEG-VKL--QRLMGHVQFV 453 (510)
Q Consensus 378 ~lv~-~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~-~~~--~~~~~~I~f~ 453 (510)
..+. .|.++.|.+.+++.|..++..++..+...+.++.++..|.+|+.|+++.++|++...++ ..+ .+.+|+|+|+
T Consensus 1209 ~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~ 1288 (1522)
T TIGR00957 1209 FAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFR 1288 (1522)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEE
Confidence 5554 58899999999999999999999999999999999999999999999877664311111 111 1356899999
Q ss_pred eeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 454 nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
||+|+|++++ ++||+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|+
T Consensus 1289 nVsf~Y~~~~-~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~ 1344 (1522)
T TIGR00957 1289 NYCLRYREDL-DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEII 1344 (1522)
T ss_pred EEEEEeCCCC-cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEE
Confidence 9999998543 4799999999999999999999999999999999999999999984
No 28
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=3.4e-42 Score=374.59 Aligned_cols=374 Identities=17% Similarity=0.112 Sum_probs=274.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 123 MWNLIGRDKWIVLVAVASLIVAAVSEITM-PRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIV 201 (510)
Q Consensus 123 l~~~~~~~~~~l~~~~l~~i~~~l~~l~~-P~~~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~ 201 (510)
++++++++++.++..++++++.+++.+.. |++....++.... +... ...+.++.++..++.+++.+.....+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (547)
T PRK10522 4 LRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADT-SLLV----LPEFLGLLLLLMAVTLGSQLALTTLGHH 78 (547)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788998899999999998888775 4444445543211 1111 1111122222344567788888889999
Q ss_pred HHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 010471 202 LVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLIC 281 (510)
Q Consensus 202 i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~ 281 (510)
+..++|.++|++++++|+++|+++++||+++|+++|++.++..+. .+..++..++.+++++++|++++|+++++++++.
T Consensus 79 ~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~ 157 (547)
T PRK10522 79 FVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTAIWM 157 (547)
T ss_pred HHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998665 4677788888899999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 282 SFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTE---EKELGRYKIWLEKLAFIRIRESMAYGLWN 358 (510)
Q Consensus 282 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (510)
|+..++...+.++.++..++.++..++.++.+.|.++|+++++ ++.+ +.+.+++++..++..+...+.........
T Consensus 158 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (547)
T PRK10522 158 AVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSAV 236 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 8887777777777777777788888999999999999999996 4444 35577888888777766555443333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 010471 359 MSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 438 (510)
Q Consensus 359 ~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~ 438 (510)
.....+..+...+.+++++.. +..+.+.+..+..+...+..|+..+...+..+.++..+.+|+.++++.+++++..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~- 312 (547)
T PRK10522 237 NWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFP- 312 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc-
Confidence 222222111111122223221 1123334444444444566899999999999999999999999997654432211
Q ss_pred CCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 439 EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 439 ~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
+. .+.+..++|+|+||+|+||++ +++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|+
T Consensus 313 ~~-~~~~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~ 381 (547)
T PRK10522 313 RP-QAFPDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEIL 381 (547)
T ss_pred cc-cccCcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 11 111123579999999999843 4699999999999999999999999999999999999999999984
No 29
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-41 Score=348.97 Aligned_cols=383 Identities=19% Similarity=0.184 Sum_probs=295.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh-chhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 125 NLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSA-QREEAMVFHKSSR--FLVLLCVTSGIFSGLRSGCFSIANIV 201 (510)
Q Consensus 125 ~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~-~~~~~~~~~~~~~--~l~~l~~~~~~~~~i~~~~~~~~~~~ 201 (510)
+..+++|+.+..+++++++..+..+..-...+..+... ..+....+.-... ..=++.+.+.+..+.-....+....+
T Consensus 9 ~l~~~~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~Atfr 88 (573)
T COG4987 9 RLYKRHKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDATFR 88 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 33344777888888888887777766554444444221 1111112211000 11134455666666666666778889
Q ss_pred HHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 010471 202 LVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLIC 281 (510)
Q Consensus 202 i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~ 281 (510)
+...+|.++|+++...++.-..+.++||+++|++.|++.+++.+-..+...+..++...+..+.+.++||.+++......
T Consensus 89 vL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~l 168 (573)
T COG4987 89 VLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLIL 168 (573)
T ss_pred HHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888888888888888888899999988765554
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 282 SF-LSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMS 360 (510)
Q Consensus 282 ~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (510)
.+ ..++..++.++.++..+...+..+...+...|.+.|..+.+.||+++.+.+.+++..+.+.+.+.+..+..+.....
T Consensus 169 l~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~ 248 (573)
T COG4987 169 LLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAI 248 (573)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 34455667777788888888888899999999999999999999999999999999999999999988888777787
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 010471 361 FITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMV-DNLSSLLQSIGATEKVFQLIDLLPSNQFLSE 439 (510)
Q Consensus 361 ~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~ 439 (510)
..++.....+..+.+.+..+-.|..+.....++++.......++..+. ..+..+.+...|++|+.++.+.+|+..++ +
T Consensus 249 ~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~-~ 327 (573)
T COG4987 249 LLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFP-D 327 (573)
T ss_pred HHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCC-c
Confidence 777777666644444445677787775544444444444455555555 56688889999999999999998886644 1
Q ss_pred CccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 440 GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 440 ~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
. +.+.....++++||||+||++ +.++|+|+||++++||+|||+|+|||||||+++||+|.|||++|+|+
T Consensus 328 ~-~~~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~ 396 (573)
T COG4987 328 E-QTATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSIT 396 (573)
T ss_pred c-ccCCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeee
Confidence 1 122222389999999999976 36899999999999999999999999999999999999999999985
No 30
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=3.2e-42 Score=380.83 Aligned_cols=392 Identities=13% Similarity=0.060 Sum_probs=311.5
Q ss_pred hHHHHHHHHHhhhhhHH-----HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhhhHHHHHHHH----HHHHHHHHHHH
Q 010471 116 VWIALSRMWNLIGRDKW-----IVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSR----FLVLLCVTSGI 186 (510)
Q Consensus 116 ~~~~l~~l~~~~~~~~~-----~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~~~~~~~~~~----~l~~l~~~~~~ 186 (510)
+++.+++++++++||++ .++.++++.++.+++.+..|.+.+..++.....+...+..... +++...++..+
T Consensus 75 ~~~~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~ 154 (659)
T TIGR00954 75 FLGKLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSA 154 (659)
T ss_pred HHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788899999886 6778888888889999999998887776543333222221111 11222334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 187 FSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINL 266 (510)
Q Consensus 187 ~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l 266 (510)
..+++.++......++..+++.+.+++....+..|||+ ++|++.+|+++|++.+++.+...+..++..++.++++++.|
T Consensus 155 ~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L 233 (659)
T TIGR00954 155 IKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKL 233 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666677777888888888888888899999987 89999999999999999999999999999999999888888
Q ss_pred HH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHH
Q 010471 267 LT-LSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAF 345 (510)
Q Consensus 267 ~~-~s~~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~ 345 (510)
+. ++|.+++++++..|+..++.+.+.++.++..++.++..++.++...|.++|+++||+|+.|+.+.+++++..+++.+
T Consensus 234 ~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~ 313 (659)
T TIGR00954 234 LTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVE 313 (659)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 86 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHh-c----CccCHhHHHH-HHHH---HHHHHHHHHHHHHHHHHH
Q 010471 346 IRIRESMAYGLWNMSFITLYRS-TQVMAV-LLGGMSIM-I----GQVSPEQLTK-YVLY---CEWLIYATWRMVDNLSSL 414 (510)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~-~~v~~l-~~g~~lv~-~----g~is~G~l~a-f~~~---~~~~~~~~~~l~~~~~~~ 414 (510)
...+..+..+....+..++... ...+.+ +.|+..+. . |.+|.|.+++ |+.+ ..++..|+..++....++
T Consensus 314 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i 393 (659)
T TIGR00954 314 HLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDM 393 (659)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988877777777776666542 222333 33332222 2 7899998776 6655 456688999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCC--------CC--CC-------------ccCCCccccEEEEeeeEECCCCCCCCccccc
Q 010471 415 LQSIGATEKVFQLIDLLPSNQF--------LS--EG-------------VKLQRLMGHVQFVNISFHYPSRPTVPILNHV 471 (510)
Q Consensus 415 ~~~~~a~~rl~eil~~~~e~~~--------~~--~~-------------~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~ni 471 (510)
.++.++.+|++|+++.+++.+. .+ +. .......+.|+++||+|+||++ +++|+|+
T Consensus 394 ~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~i 471 (659)
T TIGR00954 394 TRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESL 471 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--Ceeeecc
Confidence 9999999999999976433110 00 00 0011133579999999999743 4699999
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 472 sltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
||+|++||++|||||||||||||+++|+|+|+|++|+|.
T Consensus 472 sl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~ 510 (659)
T TIGR00954 472 SFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLT 510 (659)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEe
Confidence 999999999999999999999999999999999999873
No 31
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-40 Score=345.75 Aligned_cols=333 Identities=18% Similarity=0.215 Sum_probs=292.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 010471 176 FLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRN 255 (510)
Q Consensus 176 ~l~~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~ 255 (510)
.+.+..++.+++.+.+.......+..+..++|.++++|+.++++.+-...++|+.++.+...+++++..++..++..+..
T Consensus 45 ~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~ 124 (559)
T COG4988 45 LLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLS 124 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455567788888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHH
Q 010471 256 SLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGR 335 (510)
Q Consensus 256 ~~~~i~~li~l~~~s~~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~ 335 (510)
.+.....++.++++||.-+++.+++.|++.+.+.+.+...++..+++.+.....++...|.++|+.|+|.|++.++..++
T Consensus 125 ~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~ 204 (559)
T COG4988 125 AIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEER 204 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CccCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 336 YKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSL 414 (510)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~-g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~ 414 (510)
..+..+++++.+++.-+..=.......++..++..++..+.+..... |+++......++...--+..|+..++..+..-
T Consensus 205 i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~ 284 (559)
T COG4988 205 IRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAA 284 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999988743322233667777777777776777777777 89999988888888888999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCC-ccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHH
Q 010471 415 LQSIGATEKVFQLIDLLPSNQFLSEG-VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKST 493 (510)
Q Consensus 415 ~~~~~a~~rl~eil~~~~e~~~~~~~-~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKST 493 (510)
+.+.+|.++++.+++.+++....... .......-+|+.+|++|+||+. +++++|+||+++|||++||||+|||||||
T Consensus 285 ~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKST 362 (559)
T COG4988 285 AAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKST 362 (559)
T ss_pred hhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHH
Confidence 99999999999999987764322111 1112223356666999999865 37999999999999999999999999999
Q ss_pred HHHHHhcccCCCCceeC
Q 010471 494 FVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 494 L~kLL~g~y~p~sG~I~ 510 (510)
|+++|+||++|++|+|+
T Consensus 363 Ll~lL~G~~~~~~G~I~ 379 (559)
T COG4988 363 LLNLLLGFLAPTQGEIR 379 (559)
T ss_pred HHHHHhCcCCCCCceEE
Confidence 99999999999999984
No 32
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2e-40 Score=393.80 Aligned_cols=324 Identities=15% Similarity=0.160 Sum_probs=253.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 186 IFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFIN 265 (510)
Q Consensus 186 ~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~ 265 (510)
+..+++.........+...++|.+++++++++|+.|||++++|++++|+++|++.+++.+...+..++..++.+++.+++
T Consensus 1013 ~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~ 1092 (1560)
T PTZ00243 1013 FSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILV 1092 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555667789999999999999999999999999999999999999999999899899999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHH
Q 010471 266 LLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAF 345 (510)
Q Consensus 266 l~~~s~~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~ 345 (510)
+++.+|.+.++++.+..++..+...+.+..++..+...+..+...+.+.|+++|++|||+|+.|+++.+++.+..++..+
T Consensus 1093 ~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~ 1172 (1560)
T PTZ00243 1093 TSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYS 1172 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 99888865544433333344445566666677777777788889999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 346 IRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSI--MIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEK 423 (510)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv--~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~r 423 (510)
...+......+......++..+..+++.+++...+ ..+.+++|.+..++.|..++..++..+...+..+.+++.+.+|
T Consensus 1173 ~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eR 1252 (1560)
T PTZ00243 1173 CSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVER 1252 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76665433333334444444444333344444333 3456889999888999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCC-------------------------CCc-----cCCCccccEEEEeeeEECCCCCCCCccccceE
Q 010471 424 VFQLIDLLPSNQFLS-------------------------EGV-----KLQRLMGHVQFVNISFHYPSRPTVPILNHVCL 473 (510)
Q Consensus 424 l~eil~~~~e~~~~~-------------------------~~~-----~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisl 473 (510)
+.++++..|+++... +.. ...+..|+|+|+||+|+|+++ .++||+||||
T Consensus 1253 i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf 1331 (1560)
T PTZ00243 1253 LLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVSF 1331 (1560)
T ss_pred HHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecceE
Confidence 999997543321000 000 011235789999999999754 3469999999
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
+|+|||+|||||+||||||||+++|+|+|+|++|+|+
T Consensus 1332 ~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~ 1368 (1560)
T PTZ00243 1332 RIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIR 1368 (1560)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 9999999999999999999999999999999999984
No 33
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-40 Score=339.60 Aligned_cols=389 Identities=20% Similarity=0.269 Sum_probs=306.4
Q ss_pred HHHHHHHHHhhhh----h-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhh--hHHHHHHHHHH---HHHHHHHHH
Q 010471 117 WIALSRMWNLIGR----D-KWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREE--AMVFHKSSRFL---VLLCVTSGI 186 (510)
Q Consensus 117 ~~~l~~l~~~~~~----~-~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~--~~~~~~~~~~l---~~l~~~~~~ 186 (510)
+...+.+..+.++ + +.+.+.++.+.+.+-++...+|+++...++.....+ +..+......+ .+.-+.+.+
T Consensus 10 ~~~~~~l~~~~~~k~~p~~r~~v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~ 89 (591)
T KOG0057|consen 10 LKILRSLVSYKWPKSRPVLRFRVFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSV 89 (591)
T ss_pred hHHHHHHHhhheecCCceeeehHHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHH
Confidence 3555666655544 3 345555555555557888889998877775542111 11121111112 223345667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 010471 187 FSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAF-IN 265 (510)
Q Consensus 187 ~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~l-i~ 265 (510)
+..++...+..+.+++..+.-+++|+++++++.++|.+..+|++.+.+.+.+..|+.++...+..++..++-+.... .+
T Consensus 90 F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l 169 (591)
T KOG0057|consen 90 FNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGIL 169 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999999999999999999999999999999988877777766655444333 33
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHH
Q 010471 266 LLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAF 345 (510)
Q Consensus 266 l~~~s~~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~ 345 (510)
-.-+.+..+++++.....+.........++.+..+++..+..++...+.|++.+.++||+||.|++|.++|.+.+.++.+
T Consensus 170 ~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~ 249 (591)
T KOG0057|consen 170 YYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYER 249 (591)
T ss_pred HHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 34566777777777766666655556667777777788888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 346 IRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVF 425 (510)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~ 425 (510)
...+.....+..+.....+.......+.+.|+.-+.+|.++.|+++....+..++..|++.++..+.++.++...++.++
T Consensus 250 ~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~ 329 (591)
T KOG0057|consen 250 AGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLF 329 (591)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99998878888888877777777777778888888999999999999999999999999999999999999999998888
Q ss_pred HhhcCCCCCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471 426 QLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (510)
Q Consensus 426 eil~~~~e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~ 505 (510)
-..+...+.++. .......++.|+|+||+|+|+ |+++||+++||+||+||+|||||+|||||||++++|+|||| +
T Consensus 330 ~l~~~~~~i~~~--~~~i~~~~~~I~F~dV~f~y~--~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~ 404 (591)
T KOG0057|consen 330 ILLEVDEDIQEA--ALPIELFGGSIEFDDVHFSYG--PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-Y 404 (591)
T ss_pred hhhhhhhhhhhc--cCCcccCCCcEEEEeeEEEeC--CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-c
Confidence 776543332211 112223457899999999997 34679999999999999999999999999999999999999 9
Q ss_pred CceeC
Q 010471 506 DGQVC 510 (510)
Q Consensus 506 sG~I~ 510 (510)
+|+|+
T Consensus 405 sG~I~ 409 (591)
T KOG0057|consen 405 SGSIL 409 (591)
T ss_pred CCcEE
Confidence 99985
No 34
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=4e-40 Score=391.80 Aligned_cols=365 Identities=19% Similarity=0.225 Sum_probs=252.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010471 138 VASLIVAAVSEITMPRILAEAVFSAQR-EEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLF 216 (510)
Q Consensus 138 ~l~~i~~~l~~l~~P~~~~~~i~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~ 216 (510)
+++.++..++.+..++++..+.+.... .+...+ ......++.++..++.+++.++....+.+...++|.++++++++
T Consensus 921 ~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~--~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~ 998 (1622)
T PLN03130 921 FLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLF--YNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILR 998 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCCchhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444455555566666655532211 111111 11223344455666778888888889999999999999999999
Q ss_pred CCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 010471 217 QDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFL-SIIVSVYGQYQ 295 (510)
Q Consensus 217 lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~l~-~~~~~~~~~~~ 295 (510)
+|++||+++++|++++|+++|++.+++.+...+..++..++.+++.++++++++|...+ ++++++++ .....++.+..
T Consensus 999 ~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~-~~~pl~~~~~~~~~~~~~~~ 1077 (1622)
T PLN03130 999 APMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLW-AIMPLLVLFYGAYLYYQSTA 1077 (1622)
T ss_pred CCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999899888888888874333 33333322 22333444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 010471 296 KRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWN-MSFITLYRSTQVMAVL 374 (510)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~v~~l~ 374 (510)
++..+...+..+...+.+.|+++|++|||+|+.++++.+++++..+.. .+........+ +....+..+..+++++
T Consensus 1078 r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~----~~~~~~~~~~~~wl~~~l~~~~~~~i~~ 1153 (1622)
T PLN03130 1078 REVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNN----IRFTLVNMSSNRWLAIRLETLGGLMIWL 1153 (1622)
T ss_pred HHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666778889999999999999999999886665555444433 33322222111 1111111222233333
Q ss_pred HHHHHHhcCc-cC-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-CCCccC--CC
Q 010471 375 LGGMSIMIGQ-VS-----PEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL-SEGVKL--QR 445 (510)
Q Consensus 375 ~g~~lv~~g~-is-----~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~-~~~~~~--~~ 445 (510)
.+...+..+. .. .+.+..++.|...+..++..+...+..+.++..+.||+.|+++.++|+... ++...+ .+
T Consensus 1154 ~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp 1233 (1622)
T PLN03130 1154 TASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWP 1233 (1622)
T ss_pred HHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCC
Confidence 4444454432 11 233333444555666667777778888899999999999999887764321 111111 23
Q ss_pred ccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 446 ~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.+|+|+|+||+|+|+++ .++||+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|+
T Consensus 1234 ~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~ 1297 (1622)
T PLN03130 1234 SSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRIL 1297 (1622)
T ss_pred CCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEE
Confidence 46899999999999643 34799999999999999999999999999999999999999999984
No 35
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.1e-39 Score=387.57 Aligned_cols=327 Identities=18% Similarity=0.244 Sum_probs=239.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 010471 179 LLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQ 258 (510)
Q Consensus 179 ~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~ 258 (510)
++.++..++.+++.++....+.+...++|.+++++++++|++||+++++|++++|+++|++.+++.+...+..++..++.
T Consensus 958 ~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~ 1037 (1495)
T PLN03232 958 LLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQ 1037 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566778888888889999999999999999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHH
Q 010471 259 GAGAFINLLTLSWPLTLSALLICSFLS-IIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYK 337 (510)
Q Consensus 259 ~i~~li~l~~~s~~l~li~li~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~ 337 (510)
+++.+++++.+++...++ ++.++++. +...++.+..++..+...+..+...+.+.|+++|++|||+|+.++++.++++
T Consensus 1038 ~i~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~ 1116 (1495)
T PLN03232 1038 LLSTFALIGTVSTISLWA-IMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKING 1116 (1495)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHH
Confidence 888888888777643333 33332222 2233344445556666677778889999999999999999999887666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCccC-----HhHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 338 IWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIM-IGQVS-----PEQLTKYVLYCEWLIYATWRMVDNL 411 (510)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~-~g~is-----~G~l~af~~~~~~~~~~~~~l~~~~ 411 (510)
+..+...+...... ....| ....+.....+++++.+...+. .|.+. .+.+..++.|...+..++..+...+
T Consensus 1117 ~~~~~~~~~~~~~~-~~~~w--l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~ 1193 (1495)
T PLN03232 1117 KSMDNNIRFTLANT-SSNRW--LTIRLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQA 1193 (1495)
T ss_pred HHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444433222211 11111 1111112222333333444444 24321 2233345667777888888999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCC-CCCccC--CCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCC
Q 010471 412 SSLLQSIGATEKVFQLIDLLPSNQFL-SEGVKL--QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSG 488 (510)
Q Consensus 412 ~~~~~~~~a~~rl~eil~~~~e~~~~-~~~~~~--~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SG 488 (510)
.++..+..+.||+.|+++.++|++.. ++...+ .+..|+|+|+||+|+|+++ .++||+|+||+|+|||+|||||+||
T Consensus 1194 ~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SG 1272 (1495)
T PLN03232 1194 SKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTG 1272 (1495)
T ss_pred HHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCC
Confidence 99999999999999999887764321 111111 2345789999999999643 3579999999999999999999999
Q ss_pred CcHHHHHHHHhcccCCCCceeC
Q 010471 489 SGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 489 SGKSTL~kLL~g~y~p~sG~I~ 510 (510)
||||||+++|+|+|+|++|+|+
T Consensus 1273 SGKSTL~~lL~rl~~p~~G~I~ 1294 (1495)
T PLN03232 1273 AGKSSMLNALFRIVELEKGRIM 1294 (1495)
T ss_pred CCHHHHHHHHhCCCcCCCceEE
Confidence 9999999999999999999984
No 36
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.5e-42 Score=343.19 Aligned_cols=368 Identities=18% Similarity=0.264 Sum_probs=276.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhchhhhHHHHHHHHHHH-HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 138 VASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLV-LLCV------TSGIFSGLRSGCFSIANIVLVKRLRETL 210 (510)
Q Consensus 138 ~l~~i~~~l~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l~-~l~~------~~~~~~~i~~~~~~~~~~~i~~~lr~~l 210 (510)
+++.++.-+.....|.+....++.....+ .+.....+.. ++-+ .++++.-+|..+...+.+--..++-.++
T Consensus 221 l~ll~i~rli~~~~pi~~k~iv~~ltap~--~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~l 298 (790)
T KOG0056|consen 221 LFLLIIGRLINVSLPILSKWIVDELTAPD--TFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETEL 298 (790)
T ss_pred HHHHHHHHHHhhhhHHhHHHHHHhhcCcc--hhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHH
Confidence 33444444555667877666665432111 1111111111 1111 1233344444443345555567788899
Q ss_pred HHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHH
Q 010471 211 YSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFIN-LLTLSWPLTLSALLICSFLSIIVS 289 (510)
Q Consensus 211 ~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~-l~~~s~~l~li~li~~~l~~~~~~ 289 (510)
|+|+.++++.++-++++||++.-+++..+.+. ++.....++...++-..+.+++ ...+||+.++++++...++..+..
T Consensus 299 frHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti 377 (790)
T KOG0056|consen 299 FRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTI 377 (790)
T ss_pred HHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheee
Confidence 99999999999999999999988887766666 5444444454444444444444 456899999999988887776655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 290 VYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQ 369 (510)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 369 (510)
..-..+.+.++++.....+......|++-+.+|||.||+|++|.++|++...++.+...|........+...+.+..++.
T Consensus 378 ~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgl 457 (790)
T KOG0056|consen 378 KITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGL 457 (790)
T ss_pred eeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 55555666666666555566667789999999999999999999999999999988877776555555666666666666
Q ss_pred HHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccCCCcccc
Q 010471 370 VMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGH 449 (510)
Q Consensus 370 v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~~~~~~~~ 449 (510)
++...+.++.|..+.+++|+.+.|..|..++..|+...+..+..++.+...+|+++|++++++|..+.++..+.....|.
T Consensus 458 l~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~ 537 (790)
T KOG0056|consen 458 LAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGK 537 (790)
T ss_pred hhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCe
Confidence 66667777888899999999999999999999999999999999999999999999999999887654333333445799
Q ss_pred EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+|+||+|+|+ |++|||+||||+++|||++|+|||||+||||+++||.||||.++|.|+
T Consensus 538 i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~ 596 (790)
T KOG0056|consen 538 IEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSIT 596 (790)
T ss_pred EEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEE
Confidence 99999999997 457999999999999999999999999999999999999999999984
No 37
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-38 Score=362.84 Aligned_cols=328 Identities=20% Similarity=0.302 Sum_probs=273.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 010471 179 LLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQ 258 (510)
Q Consensus 179 ~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~ 258 (510)
++.++..++..++...+...+.+....|..++++++++.|++|||+.++|+|+||.++|++.+++.+...+..++.+++.
T Consensus 866 ~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~ 945 (1381)
T KOG0054|consen 866 LLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLN 945 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHH
Confidence 44555666777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHH
Q 010471 259 GAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKI 338 (510)
Q Consensus 259 ~i~~li~l~~~s~~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~ 338 (510)
+++.++++....|...++++...+++..+..+|.+..++..|......+..-+++.|+++|+.|||+|+.|+++.+++.+
T Consensus 946 ~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~ 1025 (1381)
T KOG0054|consen 946 VLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDE 1025 (1381)
T ss_pred HHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHH
Confidence 99999999999999999888888888888888888888888888888899999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 339 WLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMI--GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQ 416 (510)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~--g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~ 416 (510)
..+...+...-....+-+...-..+ ++.++++..+...++. +.+++|.+...+.|+.++...+.+++....++..
T Consensus 1026 ~~D~~~~~~f~~~~a~RWla~Rle~---ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn 1102 (1381)
T KOG0054|consen 1026 LIDENSRAFFLSISANRWLAVRLEL---LGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELEN 1102 (1381)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888766554432222111111222 2233333333333332 2277899988899999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCC-CCC--CccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHH
Q 010471 417 SIGATEKVFQLIDLLPSNQF-LSE--GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKST 493 (510)
Q Consensus 417 ~~~a~~rl~eil~~~~e~~~-~~~--~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKST 493 (510)
.++|.||+.|+.+.++|.+. .++ +++..|.+|+|+|+|++.+|..+ .++|||||||+|+|||||||||++||||||
T Consensus 1103 ~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSS 1181 (1381)
T KOG0054|consen 1103 NMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSS 1181 (1381)
T ss_pred cchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHH
Confidence 99999999999997766221 111 22334678999999999999643 367999999999999999999999999999
Q ss_pred HHHHHhcccCCCCceeC
Q 010471 494 FVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 494 L~kLL~g~y~p~sG~I~ 510 (510)
|++.|.|+.+|.+|+|.
T Consensus 1182 L~~aLFRl~e~~~G~I~ 1198 (1381)
T KOG0054|consen 1182 LILALFRLVEPAEGEIL 1198 (1381)
T ss_pred HHHHHHHhcCccCCeEE
Confidence 99999999999999984
No 38
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.6e-37 Score=368.66 Aligned_cols=320 Identities=16% Similarity=0.199 Sum_probs=248.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 184 SGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAF 263 (510)
Q Consensus 184 ~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~l 263 (510)
..++.+++.+++.....+...++|.++++++++.|++||++.++|++++|+++|++.+++.+...+..++..++.+++.+
T Consensus 938 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l 1017 (1490)
T TIGR01271 938 VLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAI 1017 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHH
Q 010471 264 INLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKL 343 (510)
Q Consensus 264 i~l~~~s~~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~ 343 (510)
+++++++|.++++++..+++++++..++.+..++..+...+..+...+.+.|+++|+.|||+|+.++++.+++.+..++.
T Consensus 1018 ~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~ 1097 (1490)
T TIGR01271 1018 FVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLH 1097 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999887765555454555555666666777777777788899999999999999999999999999999988865
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 344 AFIRIRESMAYGLWNMSFITLYRSTQV--MAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGAT 421 (510)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~l~~~~~v--~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 421 (510)
.+..........+......++..+..+ ++++++ ...++.|.+..++.|...+..++..+...+..+...+.+.
T Consensus 1098 ~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~-----~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~ 1172 (1490)
T TIGR01271 1098 TANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIG-----TNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSV 1172 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443333222222211222222111111 111222 2234556666666777778888888888899999999999
Q ss_pred HHHHHhhcCCCCCCCCCCC---------------cc--CCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEE
Q 010471 422 EKVFQLIDLLPSNQFLSEG---------------VK--LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIV 484 (510)
Q Consensus 422 ~rl~eil~~~~e~~~~~~~---------------~~--~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIV 484 (510)
+|+.++++.++|+....+. .. ..+..|+|+|+||+|+|+++ .++||+|+||+|+|||+||||
T Consensus 1173 eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIv 1251 (1490)
T TIGR01271 1173 SRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLL 1251 (1490)
T ss_pred HHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEE
Confidence 9999999877664311110 00 11345889999999999853 467999999999999999999
Q ss_pred cCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 485 GLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 485 G~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+||||||||+++|+|+|+ ++|+|+
T Consensus 1252 GrSGsGKSTLl~lL~rl~~-~~G~I~ 1276 (1490)
T TIGR01271 1252 GRTGSGKSTLLSALLRLLS-TEGEIQ 1276 (1490)
T ss_pred CCCCCCHHHHHHHHhhhcC-CCcEEE
Confidence 9999999999999999998 799984
No 39
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.1e-36 Score=361.98 Aligned_cols=373 Identities=15% Similarity=0.111 Sum_probs=266.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHH
Q 010471 127 IGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLR-SG--CFSIANIVLV 203 (510)
Q Consensus 127 ~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~-~~--~~~~~~~~i~ 203 (510)
++-+++.++.+.++.++..++....|+++...+.....++.. ... ..+..++.+...+..... .+ .....+.++.
T Consensus 296 ~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir 373 (1495)
T PLN03232 296 NNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDPA-WVG-YVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLR 373 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-chH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777778888888888898887776433222211 101 111111111111111111 11 1245666777
Q ss_pred HHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 010471 204 KRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSF 283 (510)
Q Consensus 204 ~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~l 283 (510)
..++..+|+|+++++..++++.++|++++++++|++++++.. ..+..+....+.++++++++ .+.+++.++++.++
T Consensus 374 ~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l---~~~lg~~~l~~~~v 449 (1495)
T PLN03232 374 STLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLL---YQQLGVASLFGSLI 449 (1495)
T ss_pred HHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHH
Confidence 888889999999999999999999999999999999999975 44555554444444433332 23344444433332
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 284 LS---IIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMS 360 (510)
Q Consensus 284 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (510)
++ .+..++.++.++..++.++..++..+.+.|.++|+++||.|+.|+.+.+++++..++..+...+.....+.....
T Consensus 450 ~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~ 529 (1495)
T PLN03232 450 LFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFI 529 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 234455677777778888888889999999999999999999999999999988777766665554333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 010471 361 FITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEG 440 (510)
Q Consensus 361 ~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~ 440 (510)
.... ...+.++++|++.+.+|.+++|.+++++.+...+..|+..+...+..+.++..+.+|+.++++.+++.... +.
T Consensus 530 ~~~~--~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~-~~ 606 (1495)
T PLN03232 530 LNSI--PVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQ-NP 606 (1495)
T ss_pred HHHH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc-cC
Confidence 1111 11233467889999999999999999999999999999999999999999999999999999876542211 11
Q ss_pred ccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 441 VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 441 ~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
. .....+.|+|+||+|+|++++++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|.+
T Consensus 607 ~-~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i 674 (1495)
T PLN03232 607 P-LQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS 674 (1495)
T ss_pred C-cCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCE
Confidence 1 1112357999999999986545689999999999999999999999999999999999999999865
No 40
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.9e-36 Score=357.75 Aligned_cols=374 Identities=14% Similarity=0.127 Sum_probs=263.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHH
Q 010471 127 IGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFS-GLRSGC--FSIANIVLV 203 (510)
Q Consensus 127 ~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~i~~~~--~~~~~~~i~ 203 (510)
++.+++.++.++++.++..++..+.|+++...+......+.. ..... +..++.+...+.. ....+. ...++.++.
T Consensus 296 ~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir 373 (1622)
T PLN03130 296 NNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEPA-WIGYI-YAFSIFVGVVLGVLCEAQYFQNVMRVGFRLR 373 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777888888888888998887766432222211 11111 1111111111101 111111 235667778
Q ss_pred HHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--
Q 010471 204 KRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLIC-- 281 (510)
Q Consensus 204 ~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~-- 281 (510)
..++..+|+|+++++...+++.++|++++++++|++++++... .+..++...+.++++++++.. .+++.+++++
T Consensus 374 ~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~---~lg~~~l~g~~v 449 (1622)
T PLN03130 374 STLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQ---QLGVASLIGSLM 449 (1622)
T ss_pred HHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 8888899999999999999999999999999999999999864 455555555555544444332 2333332222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 282 -SFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMS 360 (510)
Q Consensus 282 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (510)
.+++.+..++.++.++..++..+..++..+.+.|.++|+++||.|+.|+.+.+++++..++..+...+.....+....+
T Consensus 450 ~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~ 529 (1622)
T PLN03130 450 LVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFI 529 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223334455566677777777788888999999999999999999999999998887766555444443222222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 010471 361 FITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEG 440 (510)
Q Consensus 361 ~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~ 440 (510)
.... ...+.++++|++.+..|.+++|.+++++.+...+..|+..+...+..+.++..+.+|+.++++.+++.... +.
T Consensus 530 ~~~~--~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~-~~ 606 (1622)
T PLN03130 530 LNSI--PVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLP-NP 606 (1622)
T ss_pred HHHH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc-CC
Confidence 1111 11345567888999999999999999999999999999999999999999999999999999865432211 11
Q ss_pred ccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC-ceeC
Q 010471 441 VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-GQVC 510 (510)
Q Consensus 441 ~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s-G~I~ 510 (510)
. .....+.|+|+||+|+|++++++++|+|+||+|++||++||||+||||||||+++|+|+|+|++ |+|.
T Consensus 607 ~-~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~ 676 (1622)
T PLN03130 607 P-LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV 676 (1622)
T ss_pred c-ccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEE
Confidence 1 1112357999999999986544679999999999999999999999999999999999999999 8873
No 41
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-37 Score=310.14 Aligned_cols=318 Identities=23% Similarity=0.322 Sum_probs=273.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 010471 191 RSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFIN-LLTL 269 (510)
Q Consensus 191 ~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~-l~~~ 269 (510)
++.++..+++.....+-.+.|.|++++++.|+.++++|.+...+......|+..+...+..++..++-+....++ ...+
T Consensus 2 r~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~ 81 (497)
T COG5265 2 RDRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY 81 (497)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 345667777888888999999999999999999999999988888878788887777776666666655554444 4578
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q 010471 270 SWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIR 349 (510)
Q Consensus 270 s~~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~ 349 (510)
+|+.+++++++..++.++......++....+...+..++++....|++-+.+|||.|++|++|.++|++.++.+.+...+
T Consensus 82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k 161 (497)
T COG5265 82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK 161 (497)
T ss_pred ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence 99999999999888877766555666677777888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010471 350 ESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLID 429 (510)
Q Consensus 350 ~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~ 429 (510)
.....+..+.....+.......+...++..+..|++|.|+++....+..++..|+..++....++.++...+|+++++++
T Consensus 162 ~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~ 241 (497)
T COG5265 162 VHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD 241 (497)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence 87777777777777777777788888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccCC-CccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCce
Q 010471 430 LLPSNQFLSEGVKLQ-RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508 (510)
Q Consensus 430 ~~~e~~~~~~~~~~~-~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~ 508 (510)
.+.+..+.++..... ...|.|.|+||+|.|..+ +++|+|+||++|+|+++|+||+||+||||+++||.||||+++|.
T Consensus 242 ~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~--r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~ 319 (497)
T COG5265 242 VEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPR--RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS 319 (497)
T ss_pred cchhhccCCCCccccccccceEEEEEEEeecccc--chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCce
Confidence 888765433322222 345789999999999754 78999999999999999999999999999999999999999999
Q ss_pred eC
Q 010471 509 VC 510 (510)
Q Consensus 509 I~ 510 (510)
|.
T Consensus 320 I~ 321 (497)
T COG5265 320 IT 321 (497)
T ss_pred EE
Confidence 84
No 42
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.1e-33 Score=337.00 Aligned_cols=378 Identities=15% Similarity=0.141 Sum_probs=265.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 126 LIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHK--SSRFLVLLCVTSGIFSGLRSGCFSIANIVLV 203 (510)
Q Consensus 126 ~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~~~~~~~--~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~ 203 (510)
.++-+++.++.++++.++..++....|+++...++.....+...... ....+.++.++.+++.....+.....+.++.
T Consensus 311 l~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 390 (1522)
T TIGR00957 311 LYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIK 390 (1522)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777788888888888889998887774322111111100 0111111222223332222333456778888
Q ss_pred HHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHH
Q 010471 204 KRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWP-LTLSALLICS 282 (510)
Q Consensus 204 ~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~-l~li~li~~~ 282 (510)
..++..+|+|+++++..++++.++|++++++++|++++.+.. ..+..+....+.++++++ +++..+. .+++.+++++
T Consensus 391 ~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~-ll~~~~g~~~l~~l~~~~ 468 (1522)
T TIGR00957 391 TAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALY-FLWLNLGPSVLAGVAVMV 468 (1522)
T ss_pred HHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999854 345555555554444443 4444443 2333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 283 FLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFI 362 (510)
Q Consensus 283 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (510)
+++.+...+.++.++..++.++..++..+.+.|.++|+++||.++.|+.+.+++++..++..+...+....... ..
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~----~~ 544 (1522)
T TIGR00957 469 LMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAV----GT 544 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 44555556667777778788888889999999999999999999999999999988777766554444322222 22
Q ss_pred HHHHHHH--HHHHHHHHHHHhc--CccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 010471 363 TLYRSTQ--VMAVLLGGMSIMI--GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 438 (510)
Q Consensus 363 ~l~~~~~--v~~l~~g~~lv~~--g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~ 438 (510)
++..... +.++.++++.+.. +.++.+..++.+.+...+..|+..+...+..+.++..+.+|+.++++.++++....
T Consensus 545 ~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~ 624 (1522)
T TIGR00957 545 FTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSI 624 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc
Confidence 2222111 2223345566653 56888988888888888899999999999999999999999999998765422111
Q ss_pred CCccCC-CccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 439 EGVKLQ-RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 439 ~~~~~~-~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
+..... ...+.|+++|++|+|+++ ++++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.
T Consensus 625 ~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~ 696 (1522)
T TIGR00957 625 ERRTIKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVH 696 (1522)
T ss_pred cccccCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEE
Confidence 111111 112479999999999753 35799999999999999999999999999999999999999999983
No 43
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.5e-34 Score=294.10 Aligned_cols=375 Identities=17% Similarity=0.196 Sum_probs=308.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh---chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 126 LIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSA---QREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVL 202 (510)
Q Consensus 126 ~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~---~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i 202 (510)
.+...+..++.+.+++.+.-++.+..|.|+..+-|-. .+.+ .+. ....+.+.++++.+++..+|...+...+.++
T Consensus 17 ~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~-TLv-~Ltvlal~ly~~~glLd~iR~~~l~Rig~~l 94 (580)
T COG4618 17 VLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVP-TLV-MLTVLALGLYAFQGLLDAIRSRVLVRIGERL 94 (580)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcc-hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777778888888888888898876554321 1111 111 1222334556778888999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010471 203 VKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICS 282 (510)
Q Consensus 203 ~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~ 282 (510)
...+...+|....+.+.. .+..|+=.+-+. |.++++.+++..-...+-..=-.-+++.+.+.++|++.+++++++.
T Consensus 95 D~~L~~~v~~a~~~~~l~---~~~~g~~~Q~Lr-DL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~ 170 (580)
T COG4618 95 DRQLNGPVFAASFSAPLL---RRGSGDGLQPLR-DLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAI 170 (580)
T ss_pred HHHhccHHHHHHHhhHHh---hcCCCccccchh-hHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998866654 345566556665 9999999877633332222222456778888999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 283 FLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFI 362 (510)
Q Consensus 283 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (510)
+++....+-.+..++..++..+...+.+..+..+..+.++|++-|+.+...++|.+....+.+.+.+.+-..+.+...+.
T Consensus 171 iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr 250 (580)
T COG4618 171 ILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSR 250 (580)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 88877777777777777777888888899999999999999999999999999999999999988888777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcc
Q 010471 363 TLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVK 442 (510)
Q Consensus 363 ~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~ 442 (510)
.+-.+.+..++.+|+|+|++|++|.|.+++-..+......|+...+..|.++..++.|.+|+.+.++..|+.. +...
T Consensus 251 ~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~---~~m~ 327 (580)
T COG4618 251 ALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAA---ERMP 327 (580)
T ss_pred HHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc---CCCC
Confidence 8889999999999999999999999999999999999999999999999999999999999999999877643 2233
Q ss_pred CCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 443 LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 443 ~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.+..++.+.+|+|++.=|+. ++++|+|+||++++||.+|||||||||||||+|+|.|-|+|.+|.|+
T Consensus 328 LP~P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VR 394 (580)
T COG4618 328 LPAPQGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVR 394 (580)
T ss_pred CCCCCceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEE
Confidence 34456899999999988876 47999999999999999999999999999999999999999999985
No 44
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-33 Score=275.02 Aligned_cols=374 Identities=17% Similarity=0.130 Sum_probs=257.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 124 WNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLV 203 (510)
Q Consensus 124 ~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~ 203 (510)
+-..|++++.++....++..+++.++..-.++............... .....++.+..+.+.+.+.....+++.+.
T Consensus 5 l~llr~nr~~~i~~~a~s~a~g~~g~~lLa~in~al~e~~~~~~~~l----~~f~~llllf~~ss~is~lg~t~~gq~~I 80 (546)
T COG4615 5 LLLLRQNRWPFISVMALSLASGALGIGLLAFINQALIETADTSLLVL----PEFLGLLLLFMVSSLISQLGLTTLGQHFI 80 (546)
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44568899999988888888887776544344333212111110111 11222333334455666777788999999
Q ss_pred HHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 010471 204 KRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSF 283 (510)
Q Consensus 204 ~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~l 283 (510)
.++|+++.++++..|+..+++.+++.++.++++|+..|+ +-...++.+....+..+++.+++.++||++.+++++.+.+
T Consensus 81 ~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv 159 (546)
T COG4615 81 YKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNIS-FAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVV 159 (546)
T ss_pred HHHHHHHHHHHhcCHHHHHHHhcccchhhhhccccccee-ehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 5556677788888889999999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 284 LSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEK--ELGRYKIWLEKLAFIRIRESMAYGLWNMSF 361 (510)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (510)
..+.-.+...+.-+..+...+...++++.....++|.++++......+ ..++|....+.+++...+..........+.
T Consensus 160 ~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ 239 (546)
T COG4615 160 TIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWS 239 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhhhhhhhHHHHHHHHHH
Confidence 666555555555555556667778888888889999999987654332 234444444443331111111110111111
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 010471 362 ITLYRSTQVMAVLLGGMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEG 440 (510)
Q Consensus 362 ~~l~~~~~v~~l~~g~~lv~~-g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~ 440 (510)
+.+........+| +... +--+......+++....+..|+.+....++.+.++..|.+|+.++-..++......+
T Consensus 240 ni~l~~lIGlvf~----lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~~~- 314 (546)
T COG4615 240 NIMLLGLIGLVFW----LALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPRP- 314 (546)
T ss_pred HHHHHHHHHHHHH----HHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCCCC-
Confidence 1111111111112 2222 112222333455556667789999999999999999999999998764443332222
Q ss_pred ccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 441 VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 441 ~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
++.+.-..|+++||.|+|+.. ..=+..||++|++||.|-|||.+||||||+++||.|+|+|++|+|+
T Consensus 315 -q~~p~~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ 381 (546)
T COG4615 315 -QAFPDWKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEIL 381 (546)
T ss_pred -CcCCcccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCcee
Confidence 222234579999999999843 3678999999999999999999999999999999999999999995
No 45
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.1e-31 Score=316.61 Aligned_cols=374 Identities=15% Similarity=0.150 Sum_probs=266.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhh-hHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 128 GRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREE-AMVFHK--SSRFLVLLCVTSGIFSGLRSGCFSIANIVLVK 204 (510)
Q Consensus 128 ~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~-~~~~~~--~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~~ 204 (510)
+.++|.++...+..++..++.+..|+++...+......+ ...... ....+.+..++..++.....+.....+.++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~ 155 (1490)
T TIGR01271 76 RCFFWRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRI 155 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666667777788889988877663321111 100000 11111122223333333444555566677777
Q ss_pred HHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 010471 205 RLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFL 284 (510)
Q Consensus 205 ~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~l~ 284 (510)
.++..+|+|+++++...+++..+|++++++++|++++.+.+... ..+....+.++++++++..+..+.+++.+++++++
T Consensus 156 ~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~ 234 (1490)
T TIGR01271 156 ALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILL 234 (1490)
T ss_pred HHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888899999999999999999999999999999999976543 44445555566666666666666677766667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 285 SIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITL 364 (510)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 364 (510)
..+...+.++..+..++.++...+..+.+.|.++|+++||.++.|+.+.+++++..++-.+...+........... ...
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~-~~~ 313 (1490)
T TIGR01271 235 ALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSA-FFF 313 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 7777777788888888888888899999999999999999999999999888887766555555443322222221 111
Q ss_pred HHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccC
Q 010471 365 YRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATW-RMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKL 443 (510)
Q Consensus 365 ~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~~ 443 (510)
. ...+.++.++++.+..+ ++++.+++++.+...+..|+. .+...+..+.++.++++|+.++++.++.+.. + ..
T Consensus 314 ~-~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~--~-~~- 387 (1490)
T TIGR01271 314 S-GFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTL--E-YN- 387 (1490)
T ss_pred H-HHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc--c-cc-
Confidence 1 22334455666666654 678888888888888877764 6788888999999999999999986543221 1 01
Q ss_pred CCccccEEEEeeeEECCCCC-------------------------------CCCccccceEEeeCCCEEEEEcCCCCcHH
Q 010471 444 QRLMGHVQFVNISFHYPSRP-------------------------------TVPILNHVCLTIEANEVVAIVGLSGSGKS 492 (510)
Q Consensus 444 ~~~~~~I~f~nVsF~Y~~~~-------------------------------~~~vL~nisltI~~Ge~vAIVG~SGSGKS 492 (510)
.....|+++|++|+|++.. .+++|+|+||+|++||.++|+||+|||||
T Consensus 388 -~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKS 466 (1490)
T TIGR01271 388 -LTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKS 466 (1490)
T ss_pred -CCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHH
Confidence 1124699999999996310 13589999999999999999999999999
Q ss_pred HHHHHHhcccCCCCceeC
Q 010471 493 TFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 493 TL~kLL~g~y~p~sG~I~ 510 (510)
||+++|+|+++|++|+|.
T Consensus 467 TLl~~l~G~~~~~~G~i~ 484 (1490)
T TIGR01271 467 SLLMMIMGELEPSEGKIK 484 (1490)
T ss_pred HHHHHHhCCCCCCCceEE
Confidence 999999999999999984
No 46
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.4e-30 Score=309.96 Aligned_cols=381 Identities=13% Similarity=0.105 Sum_probs=274.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 125 NLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRF---LVLLCVTSGIFSGLRSGCFSIANIV 201 (510)
Q Consensus 125 ~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~---l~~l~~~~~~~~~i~~~~~~~~~~~ 201 (510)
...+.+++.++..+++.++..++.++.|+++...+......+.. ......+ +++..++.+++.....+.....+.+
T Consensus 237 ~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~-~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ 315 (1560)
T PTZ00243 237 TLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNAT-WGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQ 315 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777788888999999999999877666332111211 1111111 1122223333344444555667777
Q ss_pred HHHHHHHHHHHHHhcCCccccc--ccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 010471 202 LVKRLRETLYSALLFQDVYFFD--TEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALL 279 (510)
Q Consensus 202 i~~~lr~~l~~~ll~lp~~ff~--~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li 279 (510)
+...++..+|+|.++++...+. +.++|++++.+++|++++.+++.. +..+....+.++++++++..+-.+.+++.++
T Consensus 316 ~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~-~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~ 394 (1560)
T PTZ00243 316 YRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQY-CMYLWSSPMVLLLSILLLSRLVGWCALMAVA 394 (1560)
T ss_pred HHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 8888999999999999988776 568899999999999999998744 5556666777777777776666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 280 ICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNM 359 (510)
Q Consensus 280 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (510)
+++++..+...+.++..+..++..+...+..+...|.++|+++||.++.|+.+.+++++..++-.+...+..........
T Consensus 395 vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~ 474 (1560)
T PTZ00243 395 VLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSF 474 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666677777777777788888889999999999999999999999999988776655554444333332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC----
Q 010471 360 SFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ---- 435 (510)
Q Consensus 360 ~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~---- 435 (510)
+...... .+.++.++++.+..|.++++.+++.+.+...+..|+..+...+..+.++.++++|+.++++.++...
T Consensus 475 ~~~~~p~--l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~ 552 (1560)
T PTZ00243 475 VNNATPT--LMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQ 552 (1560)
T ss_pred HHHHHHH--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccc
Confidence 2222221 1223356678888999999999999999999999999999999999999999999999997654100
Q ss_pred CC-C---------C--C---------------cc---------------------------CCCccccEEEEeeeEECCC
Q 010471 436 FL-S---------E--G---------------VK---------------------------LQRLMGHVQFVNISFHYPS 461 (510)
Q Consensus 436 ~~-~---------~--~---------------~~---------------------------~~~~~~~I~f~nVsF~Y~~ 461 (510)
+. + . . .. .....+.+.++|++|++|.
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (1560)
T PTZ00243 553 DMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPS 632 (1560)
T ss_pred cchhhcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccccccccccc
Confidence 00 0 0 0 00 0001135788888887642
Q ss_pred C-------------------------------------CCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471 462 R-------------------------------------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (510)
Q Consensus 462 ~-------------------------------------~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p 504 (510)
. +++++|+|+||+|++||+++|+|+||||||||+++|+|+++|
T Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~ 712 (1560)
T PTZ00243 633 SASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEI 712 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 0 124589999999999999999999999999999999999999
Q ss_pred CCcee
Q 010471 505 SDGQV 509 (510)
Q Consensus 505 ~sG~I 509 (510)
++|+|
T Consensus 713 ~~G~i 717 (1560)
T PTZ00243 713 SEGRV 717 (1560)
T ss_pred CCcEE
Confidence 99997
No 47
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=9.1e-27 Score=265.81 Aligned_cols=377 Identities=17% Similarity=0.135 Sum_probs=248.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHH
Q 010471 129 RDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGL-RS--GCFSIANIVLVKR 205 (510)
Q Consensus 129 ~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i-~~--~~~~~~~~~i~~~ 205 (510)
-++|.++...++..+......+.|.++...+....+...... ....+.+++.+...+-..+ +. ....+.+.++...
T Consensus 198 ~f~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~-~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~a 276 (1381)
T KOG0054|consen 198 TFGRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLN-NGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSA 276 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccc-hhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHH
Confidence 355555555555555555566789888877744322211111 1111111111111111111 11 1223455555666
Q ss_pred HHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 010471 206 LRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLS 285 (510)
Q Consensus 206 lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~l~~ 285 (510)
+-..+|+|.+++.-.--....+|++++-++.|++++.+... .+..+....+.+++++.++...=-.-+++.++...+++
T Consensus 277 l~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~-~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~ 355 (1381)
T KOG0054|consen 277 LISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAAC-FLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLI 355 (1381)
T ss_pred HHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 66788999999998888888999999999999999999643 34445555555554444443221112222233333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 286 IIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLY 365 (510)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 365 (510)
.+.....++.++.+++..+...+.-+...|.++||++||.|+-|+.+.++.++.-++-.+.-.+.....+..........
T Consensus 356 p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p 435 (1381)
T KOG0054|consen 356 PLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSP 435 (1381)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777788888888999999999999999999998888887666554444443322222222211111
Q ss_pred HHHHHHHHHHHHHH-HhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccCC
Q 010471 366 RSTQVMAVLLGGMS-IMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQ 444 (510)
Q Consensus 366 ~~~~v~~l~~g~~l-v~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~~~ 444 (510)
..+.++.++++. ...+.++....++.+.+...+..|+..+......+.++.++.+|+.+++..++.+..........
T Consensus 436 --~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~ 513 (1381)
T KOG0054|consen 436 --VLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDE 513 (1381)
T ss_pred --HHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCC
Confidence 122233444444 44567788777788888888899999998899999999999999999998755432211111222
Q ss_pred CccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 445 RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 445 ~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
..+..|+++|.+|++++.+..+.|+||||+||+||.+||||+.|||||+|+..|+|-.+..+|++
T Consensus 514 ~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v 578 (1381)
T KOG0054|consen 514 AGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSV 578 (1381)
T ss_pred CCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceE
Confidence 33457999999999986434569999999999999999999999999999999999999999986
No 48
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.96 E-value=1.6e-25 Score=218.57 Aligned_cols=270 Identities=23% Similarity=0.290 Sum_probs=224.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhchhhhH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 135 LVAVASLIVAAVSEITMPRILAEAVFSAQREEAM-VFHKSSRF--LVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLY 211 (510)
Q Consensus 135 ~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~~~-~~~~~~~~--l~~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~ 211 (510)
+.++++.++.++.....|.++...++....++.. ........ +.+..++.........+.......++..++|.+++
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF 81 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888898888777543222111 11111111 11122223333444444556788899999999999
Q ss_pred HHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 010471 212 SALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVY 291 (510)
Q Consensus 212 ~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~l~~~~~~~~ 291 (510)
+|++++|.++|+++++||+++|+++|++++++.+...+..++..+...++.+++++.+||++++++++..|+..++...+
T Consensus 82 ~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~ 161 (275)
T PF00664_consen 82 EKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFIF 161 (275)
T ss_dssp HHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 292 GQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVM 371 (510)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 371 (510)
.++.++..++.++..++.++.+.|.++|+++||+||.|+++.+++++..++..+...+.....+........+..+..++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (275)
T PF00664_consen 162 SKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIVL 241 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888877777778888888887888
Q ss_pred HHHHHHHH-HhcCccCHhHHHHHHHHHHHHHHHH
Q 010471 372 AVLLGGMS-IMIGQVSPEQLTKYVLYCEWLIYAT 404 (510)
Q Consensus 372 ~l~~g~~l-v~~g~is~G~l~af~~~~~~~~~~~ 404 (510)
++++|+++ +.+|++++|++++++.+..++..|+
T Consensus 242 ~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 242 ILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 99999999 9999999999999999988887764
No 49
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.94 E-value=3.2e-23 Score=219.94 Aligned_cols=340 Identities=13% Similarity=0.126 Sum_probs=243.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCch------hHHHHHHhhHH
Q 010471 166 EAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVG------GLTSRLTADCQ 239 (510)
Q Consensus 166 ~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G------~lisrl~~D~~ 239 (510)
|...|........+++.+..+....+.++...+..+.-.-+-..+.++.+... .||.-...| ..=+|+..|+.
T Consensus 81 d~~~f~~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~y~l~~~~~~~~~dNpDQRi~eDi~ 159 (604)
T COG4178 81 DLAAFWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RYYRLAQAGGIGLIDNPDQRIQEDIR 159 (604)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHhcccccCCCChHHhHHHHHH
Confidence 33344433333334444444445555555555544555555566677777766 444444443 24489999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 240 RLSNVIGNDINMILRNSLQGAGAFINLLTL---------------SWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQE 304 (510)
Q Consensus 240 ~i~~~~~~~l~~l~~~~~~~i~~li~l~~~---------------s~~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~ 304 (510)
...+........++.++++++...+++.-+ ...+...+++-++...++...++|...++..+.+.
T Consensus 160 ~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~ 239 (604)
T COG4178 160 NFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQK 239 (604)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHH
Confidence 988876666777777777777776666622 33344444444555555566778888888877777
Q ss_pred HHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 010471 305 CNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQ 384 (510)
Q Consensus 305 ~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~ 384 (510)
..++....+...-++.+.|-.|+.|+.|.++.++.+++..+.-.+...+...+.++......+..++-..+++-....|+
T Consensus 240 ~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~ 319 (604)
T COG4178 240 LEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQ 319 (604)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCc
Confidence 78888888888899999999999999999999988888776444443333333444444445555566667777788999
Q ss_pred cCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC------CCCCCCCCccC---CCccccEEEEee
Q 010471 385 VSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP------SNQFLSEGVKL---QRLMGHVQFVNI 455 (510)
Q Consensus 385 is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~------e~~~~~~~~~~---~~~~~~I~f~nV 455 (510)
++.|+++.......++...+.++...++.+..-.+...|+.++.+.-+ +.. ...+... ...+..|+|+|+
T Consensus 320 i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~nl 398 (604)
T COG4178 320 ITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKP-ARTGRRIDFDDNADHGITLENL 398 (604)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCccccc-CcccccccccccccceeEEeee
Confidence 999999998888899999999999999999999999999999984322 111 1101000 111578999999
Q ss_pred eEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 456 SFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 456 sF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
+-.-|++ +..++++|++|++||.+-|.|+||||||||++.|+|+||--+|+|
T Consensus 399 ~l~~p~~--~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I 450 (604)
T COG4178 399 SLRTPDG--QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRI 450 (604)
T ss_pred eEECCCC--CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCce
Confidence 9999864 479999999999999999999999999999999999999999987
No 50
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.84 E-value=6.3e-18 Score=175.27 Aligned_cols=307 Identities=15% Similarity=0.164 Sum_probs=178.8
Q ss_pred HHHHHHHHHHHHHHhcCCcccccccCchhH----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 010471 201 VLVKRLRETLYSALLFQDVYFFDTEAVGGL----TSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLS 276 (510)
Q Consensus 201 ~i~~~lr~~l~~~ll~lp~~ff~~~~~G~l----isrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li 276 (510)
+.-.++-.-++++.++ ...||.-.+.++. =+|+++|+++....++...+.+....+.++.+..-++....++..+
T Consensus 152 r~R~~ltk~lh~~Y~k-~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~ 230 (659)
T KOG0060|consen 152 RFRKNLTKYLHRLYFK-GFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPV 230 (659)
T ss_pred HHHHHHHHHHHHHHhc-cceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHH
Confidence 3334444444444443 2344443333332 3689999998887766555555544443333333333333333333
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 277 ALLICSF-LSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG 355 (510)
Q Consensus 277 ~li~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (510)
.+..-.+ -.++.+.+.+-..++..+.++..++....-.+...+.+.|--|+.+..|....++.++++.+...+...+.-
T Consensus 231 ~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~ 310 (659)
T KOG0060|consen 231 SIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRF 310 (659)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322211 122333333333444445555556666666778889999999999999998888888887765554432221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc----CccCHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010471 356 LWNMSFITLYRSTQVMAVLLGGMSIMI----GQVSPEQLTKYVLYCE----WLIYATWRMVDNLSSLLQSIGATEKVFQL 427 (510)
Q Consensus 356 ~~~~~~~~l~~~~~v~~l~~g~~lv~~----g~is~G~l~af~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~rl~ei 427 (510)
....+.+++...+.++-..+.+..+.. ++++..++...+.... .++.++..+.....++.+-.+-..|+-|+
T Consensus 311 ~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el 390 (659)
T KOG0060|consen 311 WLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGEL 390 (659)
T ss_pred HHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHH
Confidence 222333333333333333222222333 3667666655443332 22334444444445555555666777777
Q ss_pred hcCCCCC-------------C-C------CCCC-ccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcC
Q 010471 428 IDLLPSN-------------Q-F------LSEG-VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGL 486 (510)
Q Consensus 428 l~~~~e~-------------~-~------~~~~-~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~ 486 (510)
++.-.+. . + ..++ .+..+.+..|+|++|+++=|++ +.-+.+|+||+|+.|+.+-|.||
T Consensus 391 ~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~ 469 (659)
T KOG0060|consen 391 MEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGP 469 (659)
T ss_pred HHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECC
Confidence 6421100 0 0 0011 1122345689999999999975 44577889999999999999999
Q ss_pred CCCcHHHHHHHHhcccCCCCcee
Q 010471 487 SGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 487 SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
||||||+|++.|.|+|+-.+|.|
T Consensus 470 sG~GKtSLlRvlggLWp~~~G~l 492 (659)
T KOG0060|consen 470 SGCGKTSLLRVLGGLWPSTGGKL 492 (659)
T ss_pred CCCchhHHHHHHhcccccCCCeE
Confidence 99999999999999999999986
No 51
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.64 E-value=1.7e-16 Score=150.99 Aligned_cols=59 Identities=36% Similarity=0.597 Sum_probs=55.6
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.+++++|+.+|++ ..||+|+||+|++||.|+||||||||||||+++++||.+|++|+|+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~ 61 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL 61 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 5899999999974 5799999999999999999999999999999999999999999974
No 52
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.63 E-value=4.1e-16 Score=146.33 Aligned_cols=60 Identities=38% Similarity=0.604 Sum_probs=56.8
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+-.||++ +.+|+||||+|++||.|||||+||||||||++.|.|+.+|++|+|.
T Consensus 3 ~i~~~nl~k~yp~~--~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~ 62 (258)
T COG3638 3 MIEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62 (258)
T ss_pred eEEEeeeeeecCCC--ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEE
Confidence 59999999999954 6899999999999999999999999999999999999999999983
No 53
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.62 E-value=4.6e-16 Score=150.68 Aligned_cols=59 Identities=37% Similarity=0.660 Sum_probs=55.5
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.++.+|++|+|++ +++|+|+||+|++||.++|+||||||||||+|+|+|+.+|.+|+|+
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~ 60 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEE
Confidence 4789999999974 5799999999999999999999999999999999999999999984
No 54
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.61 E-value=8.3e-16 Score=148.17 Aligned_cols=60 Identities=33% Similarity=0.706 Sum_probs=55.9
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
..|+++|++|+|.++ +||+||||+|++|+.+|||||+|||||||+|+++|+.+|.+|+|.
T Consensus 3 ~~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~ 62 (254)
T COG1121 3 PMIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62 (254)
T ss_pred cEEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEE
Confidence 369999999999643 599999999999999999999999999999999999999999984
No 55
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.60 E-value=4.7e-16 Score=141.08 Aligned_cols=59 Identities=34% Similarity=0.564 Sum_probs=56.4
Q ss_pred EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+|+||+-.|++. .++|+||||+|++||.+-+||||||||||++|||+|--.|++|+|.
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~ 60 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEE
Confidence 8999999999975 6799999999999999999999999999999999999999999984
No 56
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.60 E-value=9.7e-16 Score=142.09 Aligned_cols=59 Identities=37% Similarity=0.592 Sum_probs=55.5
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+-+|.+ ..||+|||++|++||+++|+||||||||||+++|.||-+|++|+|.
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~ 60 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEE
Confidence 4899999999963 4699999999999999999999999999999999999999999984
No 57
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.59 E-value=1.6e-15 Score=143.38 Aligned_cols=62 Identities=42% Similarity=0.553 Sum_probs=55.9
Q ss_pred cEEEEeeeEECCCCCC-CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~-~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.++++|+++.|+++.. ..+|+||||+|.+||+.||||+||||||||+++|+|+-+|++|+|+
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~ 65 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSIL 65 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEE
Confidence 4889999999975420 1499999999999999999999999999999999999999999984
No 58
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=1.6e-15 Score=144.29 Aligned_cols=62 Identities=29% Similarity=0.477 Sum_probs=56.6
Q ss_pred cEEEEeeeEECCCC-CCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC---CCCceeC
Q 010471 449 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~-~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~---p~sG~I~ 510 (510)
...++||+|+|+.. +++++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~ 68 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIH 68 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEE
Confidence 47899999999853 34679999999999999999999999999999999999999 8999873
No 59
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.58 E-value=1.6e-15 Score=139.19 Aligned_cols=58 Identities=33% Similarity=0.622 Sum_probs=54.2
Q ss_pred EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++||+++|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~ 58 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 578999999974 3699999999999999999999999999999999999999999873
No 60
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.58 E-value=1.9e-15 Score=145.14 Aligned_cols=60 Identities=37% Similarity=0.692 Sum_probs=55.1
Q ss_pred EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++||+++|++. .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 61 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIR 61 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 7899999999643 24699999999999999999999999999999999999999999973
No 61
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.58 E-value=1.9e-15 Score=142.24 Aligned_cols=60 Identities=33% Similarity=0.543 Sum_probs=56.4
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.-|++++|+|+|.+ +.||+|+||+|++||.+||+|+||||||||+|++.|+..|++|+|+
T Consensus 7 ~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~ 66 (263)
T COG1127 7 PLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL 66 (263)
T ss_pred ceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEE
Confidence 46999999999964 4699999999999999999999999999999999999999999984
No 62
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.58 E-value=4.4e-15 Score=143.65 Aligned_cols=66 Identities=50% Similarity=0.829 Sum_probs=59.4
Q ss_pred CccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 445 RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 445 ~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
...+.|+++|++++|+++++.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.
T Consensus 7 ~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 72 (226)
T cd03248 7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVL 72 (226)
T ss_pred CcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEE
Confidence 345789999999999754334699999999999999999999999999999999999999999873
No 63
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.57 E-value=2.1e-15 Score=145.08 Aligned_cols=61 Identities=46% Similarity=0.619 Sum_probs=54.8
Q ss_pred EEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++||+++|++.. .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~ 62 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVR 62 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEE
Confidence 57899999997421 14699999999999999999999999999999999999999999973
No 64
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.57 E-value=2.4e-15 Score=144.84 Aligned_cols=60 Identities=25% Similarity=0.503 Sum_probs=54.9
Q ss_pred EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++||+++|++. .+++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 60 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 5789999999742 24699999999999999999999999999999999999999999973
No 65
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=3.6e-15 Score=151.53 Aligned_cols=63 Identities=29% Similarity=0.395 Sum_probs=56.9
Q ss_pred ccEEEEeeeEECCCCC--CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 448 GHVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~--~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
..|+++||+|+|++.. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~ 84 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQ 84 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE
Confidence 4599999999997431 24699999999999999999999999999999999999999999984
No 66
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.57 E-value=1.7e-10 Score=119.23 Aligned_cols=302 Identities=15% Similarity=0.112 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHHHHhcCCc---ccccccC-ch---hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 010471 200 IVLVKRLRETLYSALLFQDV---YFFDTEA-VG---GLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWP 272 (510)
Q Consensus 200 ~~i~~~lr~~l~~~ll~lp~---~ff~~~~-~G---~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~ 272 (510)
..+....|.++-+++.++=. .||.-.+ -| ..=+++|.|+....+...+..+.+.--++-+++....+...+-.
T Consensus 182 ~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~s 261 (728)
T KOG0064|consen 182 SKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSATS 261 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhcc
Confidence 34455555555555544311 4443222 12 22356888988888887777777766666555554444433222
Q ss_pred H--HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Q 010471 273 L--TLSALLICSF--LSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRI 348 (510)
Q Consensus 273 l--~li~li~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~ 348 (510)
. ..+.+++..+ ...+.+.+.+...++..+.....+.....=...+.+-++|--|+..+.|.+..++..+++...-.
T Consensus 262 ~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~ 341 (728)
T KOG0064|consen 262 VGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMN 341 (728)
T ss_pred ccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHH
Confidence 1 1111111111 11222333333333333333333344444466789999999999999999999888888765333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------cCccC---HhH--HHHHHH---HHHHHHHHHHHHH
Q 010471 349 RESMAYGLWNMSFITLYRSTQVMAVLLGGMSIM------------IGQVS---PEQ--LTKYVL---YCEWLIYATWRMV 408 (510)
Q Consensus 349 ~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~------------~g~is---~G~--l~af~~---~~~~~~~~~~~l~ 408 (510)
..-....++..+-+++. =-.|-|.-+|+ .|... .|. .-.|.. +......++..++
T Consensus 342 li~k~r~~YiMleqF~m-----KYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlM 416 (728)
T KOG0064|consen 342 LIFKVRLWYIMLEQFVM-----KYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLM 416 (728)
T ss_pred HHHHHHHHHHHHHHHHH-----HHhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222223333333221 11243333332 12211 111 222322 2223345667777
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC----------C---CCCCCC------CCCcc-----CCCccccEEEEeeeEECCCCCC
Q 010471 409 DNLSSLLQSIGATEKVFQLIDL----------L---PSNQFL------SEGVK-----LQRLMGHVQFVNISFHYPSRPT 464 (510)
Q Consensus 409 ~~~~~~~~~~~a~~rl~eil~~----------~---~e~~~~------~~~~~-----~~~~~~~I~f~nVsF~Y~~~~~ 464 (510)
....++.+-.+-..|+++.++. . +|+.+. .++.. .......|.|+||-.--|+.
T Consensus 417 ssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~-- 494 (728)
T KOG0064|consen 417 SSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPAG-- 494 (728)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccCc--
Confidence 7788888888877888766531 0 111000 00000 01123469999999998865
Q ss_pred CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCce
Q 010471 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508 (510)
Q Consensus 465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~ 508 (510)
+-+..++||+|++|--.-|.||+|||||+|.++|.|+||..+|.
T Consensus 495 ~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~ 538 (728)
T KOG0064|consen 495 DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGL 538 (728)
T ss_pred ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCe
Confidence 35899999999999999999999999999999999999998886
No 67
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.57 E-value=3.9e-15 Score=143.17 Aligned_cols=61 Identities=25% Similarity=0.447 Sum_probs=55.3
Q ss_pred EEEEeeeEECCCCCC-CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~-~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++||+++|++++. +++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 63 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT 63 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEE
Confidence 789999999975321 2699999999999999999999999999999999999999999973
No 68
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.57 E-value=3.6e-15 Score=137.35 Aligned_cols=59 Identities=25% Similarity=0.470 Sum_probs=54.6
Q ss_pred EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++||+++|+++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 59 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIG 59 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 5789999999743 4699999999999999999999999999999999999999999873
No 69
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.57 E-value=3.5e-15 Score=144.41 Aligned_cols=61 Identities=34% Similarity=0.637 Sum_probs=55.1
Q ss_pred EEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++||+++|++++ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 63 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSII 63 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 78999999997431 12699999999999999999999999999999999999999999873
No 70
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.56 E-value=3.9e-15 Score=138.71 Aligned_cols=60 Identities=35% Similarity=0.667 Sum_probs=55.1
Q ss_pred EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++|++|+|+++ +.++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~ 60 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEE
Confidence 5789999999753 24699999999999999999999999999999999999999999973
No 71
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=3.6e-15 Score=144.97 Aligned_cols=62 Identities=39% Similarity=0.561 Sum_probs=56.2
Q ss_pred cEEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
-|+++||+|+|+++. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 67 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVI 67 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 489999999997432 14699999999999999999999999999999999999999999973
No 72
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=4.2e-15 Score=148.44 Aligned_cols=62 Identities=34% Similarity=0.534 Sum_probs=56.3
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++....++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 65 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQII 65 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 48999999999743224699999999999999999999999999999999999999999873
No 73
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.56 E-value=4.7e-15 Score=142.17 Aligned_cols=59 Identities=41% Similarity=0.644 Sum_probs=54.7
Q ss_pred EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++|++++|+++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 2 l~~~~l~~~~~~~--~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~ 60 (214)
T TIGR02673 2 IEFHNVSKAYPGG--VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60 (214)
T ss_pred EEEEeeeEEeCCC--ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 7899999999632 4699999999999999999999999999999999999999999973
No 74
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.56 E-value=5.9e-15 Score=142.22 Aligned_cols=62 Identities=39% Similarity=0.697 Sum_probs=56.9
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
++|+++|++++|++. +.++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 62 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSIL 62 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEE
Confidence 468999999999753 24799999999999999999999999999999999999999999873
No 75
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=4.8e-15 Score=148.57 Aligned_cols=62 Identities=32% Similarity=0.537 Sum_probs=56.0
Q ss_pred cEEEEeeeEECCCCC--CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~--~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+|+|++++ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~ 65 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVT 65 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 389999999997432 24699999999999999999999999999999999999999999873
No 76
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=5.5e-15 Score=148.23 Aligned_cols=61 Identities=28% Similarity=0.565 Sum_probs=55.4
Q ss_pred EEEEeeeEECCCCC--CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~--~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++||+|+|+++. .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 64 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVT 64 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEE
Confidence 78999999997432 13599999999999999999999999999999999999999999974
No 77
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=5e-15 Score=147.51 Aligned_cols=60 Identities=28% Similarity=0.495 Sum_probs=55.7
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
-|+++||+|+|+++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 63 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEE
Confidence 48999999999742 4699999999999999999999999999999999999999999983
No 78
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.55 E-value=5.4e-15 Score=142.48 Aligned_cols=61 Identities=41% Similarity=0.592 Sum_probs=55.3
Q ss_pred EEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++||+++|++.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~ 63 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVL 63 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 78999999997422 24699999999999999999999999999999999999999999973
No 79
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.55 E-value=6.6e-15 Score=136.53 Aligned_cols=60 Identities=45% Similarity=0.791 Sum_probs=55.0
Q ss_pred EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++|++++|++. +.++++|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~ 60 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEE
Confidence 5789999999753 24699999999999999999999999999999999999999999873
No 80
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.55 E-value=5.8e-15 Score=144.38 Aligned_cols=59 Identities=41% Similarity=0.637 Sum_probs=54.6
Q ss_pred EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++||+++|++ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 60 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEE
Confidence 789999999962 24699999999999999999999999999999999999999999973
No 81
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.55 E-value=5.8e-15 Score=142.21 Aligned_cols=61 Identities=36% Similarity=0.581 Sum_probs=54.8
Q ss_pred EEEEeeeEECCCCCC-CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~-~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++|++++|++... +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 62 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVL 62 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 578999999974211 4699999999999999999999999999999999999999999973
No 82
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.55 E-value=6.2e-15 Score=140.12 Aligned_cols=60 Identities=50% Similarity=0.634 Sum_probs=54.6
Q ss_pred EEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
|+++||+-.|.... ..++|+|+||+|++||.|||+||||||||||+++|.|+-.|++|+|
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v 62 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEV 62 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE
Confidence 67999999997432 2469999999999999999999999999999999999999999986
No 83
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.55 E-value=5.8e-15 Score=148.36 Aligned_cols=60 Identities=33% Similarity=0.564 Sum_probs=55.7
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
..|+++||+.+|.+. . +++|+|++|+.||.++|||||||||||++++|+||.+|++|+|+
T Consensus 2 ~~i~l~~v~K~yg~~--~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~ 61 (338)
T COG3839 2 AELELKNVRKSFGSF--E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61 (338)
T ss_pred cEEEEeeeEEEcCCc--e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 469999999999642 2 99999999999999999999999999999999999999999984
No 84
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.55 E-value=6.4e-15 Score=140.28 Aligned_cols=61 Identities=34% Similarity=0.477 Sum_probs=55.1
Q ss_pred EEEEeeeEECCCCCC--CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRPT--VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~--~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++||+++|+++.+ .++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|+
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~ 63 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVS 63 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEE
Confidence 578999999975311 3699999999999999999999999999999999999999999984
No 85
>PRK10908 cell division protein FtsE; Provisional
Probab=99.55 E-value=6.4e-15 Score=142.13 Aligned_cols=59 Identities=29% Similarity=0.506 Sum_probs=54.7
Q ss_pred EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 60 (222)
T PRK10908 2 IRFEHVSKAYLGG--RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW 60 (222)
T ss_pred EEEEeeEEEecCC--CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 7899999999532 4699999999999999999999999999999999999999999973
No 86
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.55 E-value=7.3e-15 Score=142.30 Aligned_cols=62 Identities=32% Similarity=0.454 Sum_probs=56.0
Q ss_pred cEEEEeeeEECCCCCC-CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~-~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|+++.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~ 68 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVS 68 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEE
Confidence 5899999999975321 2599999999999999999999999999999999999999999873
No 87
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=7.2e-15 Score=147.35 Aligned_cols=62 Identities=31% Similarity=0.549 Sum_probs=56.1
Q ss_pred cEEEEeeeEECCCCC--CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~--~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+|+|++.. ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~ 65 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKII 65 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEE
Confidence 389999999997422 14699999999999999999999999999999999999999999983
No 88
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.55 E-value=5.6e-15 Score=149.28 Aligned_cols=60 Identities=25% Similarity=0.520 Sum_probs=56.3
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
..|+++||+-+|. +..+++|+||+|++||.++|.|||||||||++++|+||.+|++|+|.
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~ 63 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEIL 63 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 4699999999996 25799999999999999999999999999999999999999999984
No 89
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.55 E-value=9.4e-15 Score=139.42 Aligned_cols=63 Identities=33% Similarity=0.647 Sum_probs=57.4
Q ss_pred cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.+.|+++|++++|++. +.++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus 4 ~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 66 (207)
T cd03369 4 HGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIE 66 (207)
T ss_pred CCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEE
Confidence 3579999999999743 24699999999999999999999999999999999999999999973
No 90
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.55 E-value=1.4e-14 Score=144.45 Aligned_cols=81 Identities=30% Similarity=0.485 Sum_probs=66.3
Q ss_pred HHHHHhhcCCCCCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 422 EKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 422 ~rl~eil~~~~e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
|.+.|++..+++++ +..+.......|+++||+++ + +++|+|+||+|++||++||+|+||||||||+++|+|+
T Consensus 15 ~~~~~~~~~~~~~~---~~~~~~~~~~~l~i~nls~~--~---~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl 86 (282)
T cd03291 15 EGFGELLEKAKQEN---NDRKHSSDDNNLFFSNLCLV--G---APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred HHHHHHHhcccccc---cccccCCCCCeEEEEEEEEe--c---ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 57788887765533 22223344567999999996 2 3599999999999999999999999999999999999
Q ss_pred cCCCCceeC
Q 010471 502 YEPSDGQVC 510 (510)
Q Consensus 502 y~p~sG~I~ 510 (510)
++|++|+|.
T Consensus 87 ~~p~~G~I~ 95 (282)
T cd03291 87 LEPSEGKIK 95 (282)
T ss_pred CCCCCcEEE
Confidence 999999973
No 91
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.55 E-value=7.1e-15 Score=142.88 Aligned_cols=61 Identities=31% Similarity=0.529 Sum_probs=55.2
Q ss_pred EEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++||+++|+++. ..++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~ 63 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVL 63 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 78999999997431 12699999999999999999999999999999999999999999873
No 92
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.54 E-value=9.3e-15 Score=141.63 Aligned_cols=61 Identities=43% Similarity=0.910 Sum_probs=56.3
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
++|+++|++|+|+++ .++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.
T Consensus 1 ~~l~~~~l~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 61 (229)
T cd03254 1 GEIEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQIL 61 (229)
T ss_pred CeEEEEEEEEecCCC--CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 469999999999742 4699999999999999999999999999999999999999999983
No 93
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.54 E-value=6.2e-15 Score=140.74 Aligned_cols=58 Identities=22% Similarity=0.420 Sum_probs=54.6
Q ss_pred EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++||+++|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 60 (207)
T PRK13539 3 LEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIK 60 (207)
T ss_pred EEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 899999999964 3599999999999999999999999999999999999999999983
No 94
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.54 E-value=5.6e-15 Score=144.19 Aligned_cols=59 Identities=34% Similarity=0.576 Sum_probs=55.2
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 60 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTIL 60 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 4899999999964 4699999999999999999999999999999999999999999973
No 95
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.54 E-value=7.6e-15 Score=143.13 Aligned_cols=61 Identities=54% Similarity=0.956 Sum_probs=55.7
Q ss_pred EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++|++++|+++.+.++|+|+||++++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~ 61 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEIL 61 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEE
Confidence 5789999999754335799999999999999999999999999999999999999999973
No 96
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=9.1e-15 Score=146.82 Aligned_cols=64 Identities=31% Similarity=0.510 Sum_probs=57.5
Q ss_pred cccEEEEeeeEECCCCC--CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 447 MGHVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~--~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.++|+++||+++|++++ ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 69 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTI 69 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 36799999999997532 13599999999999999999999999999999999999999999973
No 97
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.54 E-value=6.3e-15 Score=136.63 Aligned_cols=58 Identities=29% Similarity=0.634 Sum_probs=53.9
Q ss_pred EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
++++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~ 58 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 478999999974 3699999999999999999999999999999999999999999873
No 98
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.54 E-value=7.2e-15 Score=145.69 Aligned_cols=61 Identities=38% Similarity=0.678 Sum_probs=55.5
Q ss_pred EEEEeeeEECCCC------CCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~------~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++||+|+|++. .++++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 69 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVS 69 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 8899999999632 135699999999999999999999999999999999999999999973
No 99
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.54 E-value=7.1e-15 Score=150.28 Aligned_cols=61 Identities=31% Similarity=0.548 Sum_probs=55.7
Q ss_pred EEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++||+++|++.+ ..++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~ 63 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVI 63 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 89999999997422 24699999999999999999999999999999999999999999984
No 100
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=9.1e-15 Score=145.91 Aligned_cols=62 Identities=37% Similarity=0.546 Sum_probs=56.6
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
-|+++||+|+|++.+..++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 65 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVK 65 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEE
Confidence 48999999999753334699999999999999999999999999999999999999999973
No 101
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=8.8e-15 Score=146.94 Aligned_cols=62 Identities=32% Similarity=0.539 Sum_probs=56.2
Q ss_pred cEEEEeeeEECCCCC--CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~--~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+|+|++.+ ..++|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 65 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVT 65 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE
Confidence 489999999997432 14699999999999999999999999999999999999999999983
No 102
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.54 E-value=8.5e-15 Score=131.63 Aligned_cols=58 Identities=33% Similarity=0.589 Sum_probs=54.0
Q ss_pred EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
++++||+++|++ .++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~ 58 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEE
Confidence 578999999964 3699999999999999999999999999999999999999999873
No 103
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.53 E-value=9e-15 Score=141.29 Aligned_cols=61 Identities=34% Similarity=0.594 Sum_probs=55.0
Q ss_pred EEEEeeeEECCCC---C-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSR---P-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~---~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++||+++|++. + .+++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~ 66 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRIL 66 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE
Confidence 7899999999631 1 24699999999999999999999999999999999999999999873
No 104
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.53 E-value=1e-14 Score=145.84 Aligned_cols=61 Identities=38% Similarity=0.538 Sum_probs=55.6
Q ss_pred EEEEeeeEECCCCC--CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~--~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++||+|+|+++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~ 65 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVR 65 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 88999999997532 13699999999999999999999999999999999999999999973
No 105
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.53 E-value=1e-14 Score=142.20 Aligned_cols=60 Identities=43% Similarity=0.753 Sum_probs=55.1
Q ss_pred EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++||+++|+++ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|+
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 60 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 5789999999743 35799999999999999999999999999999999999999999973
No 106
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.53 E-value=1.4e-14 Score=139.61 Aligned_cols=62 Identities=52% Similarity=0.904 Sum_probs=56.7
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
++|+++|++++|+++ ++++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~ 62 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEE
Confidence 469999999999743 24699999999999999999999999999999999999999999873
No 107
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.53 E-value=1.1e-14 Score=147.04 Aligned_cols=62 Identities=31% Similarity=0.533 Sum_probs=55.9
Q ss_pred cEEEEeeeEECCCCC--CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~--~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+|+|++.. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~ 65 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIE 65 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE
Confidence 389999999997532 13699999999999999999999999999999999999999999973
No 108
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=9.5e-15 Score=142.79 Aligned_cols=59 Identities=32% Similarity=0.640 Sum_probs=55.3
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+|+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 61 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSIL 61 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 5899999999964 3699999999999999999999999999999999999999999973
No 109
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.53 E-value=1.1e-14 Score=140.36 Aligned_cols=61 Identities=28% Similarity=0.450 Sum_probs=55.4
Q ss_pred EEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++||+++|++.+ ++.+|+|+||++++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~ 63 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLK 63 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 78999999996422 24699999999999999999999999999999999999999999983
No 110
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.53 E-value=1.1e-14 Score=140.83 Aligned_cols=59 Identities=31% Similarity=0.542 Sum_probs=55.4
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ .++++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 65 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLL 65 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEE
Confidence 5999999999963 4699999999999999999999999999999999999999999873
No 111
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.53 E-value=1.2e-14 Score=144.78 Aligned_cols=59 Identities=37% Similarity=0.671 Sum_probs=54.8
Q ss_pred EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++||+++|+++ .++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 60 (274)
T PRK13644 2 IRLENVSYSYPDG--TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60 (274)
T ss_pred EEEEEEEEEcCCC--CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 7899999999642 4699999999999999999999999999999999999999999873
No 112
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.53 E-value=9.7e-15 Score=145.33 Aligned_cols=60 Identities=22% Similarity=0.456 Sum_probs=55.8
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|+++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 6 ~l~~~~l~~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 65 (272)
T PRK15056 6 GIVVNDVTVTWRNG--HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKIS 65 (272)
T ss_pred eEEEEeEEEEecCC--cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 59999999999732 4699999999999999999999999999999999999999999973
No 113
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.53 E-value=1.4e-14 Score=143.06 Aligned_cols=65 Identities=29% Similarity=0.528 Sum_probs=59.2
Q ss_pred CccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 445 RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 445 ~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
...+.|+++||+++|++. +..+|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|+
T Consensus 15 ~~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 79 (257)
T cd03288 15 GLGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIV 79 (257)
T ss_pred cCCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEE
Confidence 356889999999999753 24699999999999999999999999999999999999999999874
No 114
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.53 E-value=1.2e-14 Score=143.37 Aligned_cols=60 Identities=38% Similarity=0.536 Sum_probs=55.9
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~ 70 (257)
T PRK11247 11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELL 70 (257)
T ss_pred CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE
Confidence 35999999999964 4699999999999999999999999999999999999999999973
No 115
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.53 E-value=1e-14 Score=149.76 Aligned_cols=61 Identities=38% Similarity=0.615 Sum_probs=55.5
Q ss_pred EEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++||+|+|+++. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~ 63 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVL 63 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Confidence 78999999997321 35799999999999999999999999999999999999999999983
No 116
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.52 E-value=1.3e-14 Score=143.99 Aligned_cols=62 Identities=31% Similarity=0.541 Sum_probs=55.9
Q ss_pred cEEEEeeeEECCCCC------CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRP------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~------~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++.+ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~ 71 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELL 71 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEE
Confidence 589999999996321 24699999999999999999999999999999999999999999973
No 117
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=1.3e-14 Score=144.92 Aligned_cols=62 Identities=34% Similarity=0.540 Sum_probs=56.4
Q ss_pred cEEEEeeeEECCCCC---CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRP---TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~---~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
-|+++||+++|++.. ++++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 68 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVY 68 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 589999999997432 24699999999999999999999999999999999999999999873
No 118
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=1.3e-14 Score=144.89 Aligned_cols=60 Identities=23% Similarity=0.478 Sum_probs=55.3
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
-++++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 3 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~ 62 (277)
T PRK13652 3 LIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62 (277)
T ss_pred eEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 38899999999643 3599999999999999999999999999999999999999999873
No 119
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.52 E-value=1.4e-14 Score=143.97 Aligned_cols=61 Identities=26% Similarity=0.582 Sum_probs=55.7
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+|+|+||+|+|++. +.++|+|+||+|++||++||||+||||||||+++|+|+++ ++|+|+
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~ 61 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQ 61 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEE
Confidence 479999999999743 3569999999999999999999999999999999999998 789884
No 120
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=1.1e-14 Score=142.30 Aligned_cols=59 Identities=27% Similarity=0.435 Sum_probs=55.1
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 60 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN 60 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 3889999999964 3699999999999999999999999999999999999999999983
No 121
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.52 E-value=1.7e-14 Score=133.50 Aligned_cols=60 Identities=57% Similarity=0.982 Sum_probs=54.8
Q ss_pred EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++|++++|+++ ..++++|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~ 60 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEE
Confidence 5789999999753 23699999999999999999999999999999999999999999873
No 122
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.52 E-value=1.4e-14 Score=136.80 Aligned_cols=62 Identities=31% Similarity=0.394 Sum_probs=56.2
Q ss_pred cEEEEeeeEECCCC---CCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc--CCCCceeC
Q 010471 449 HVQFVNISFHYPSR---PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~---~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y--~p~sG~I~ 510 (510)
.|+++||+|+|++. .+.++|+|+||+|++||.++|+|+||||||||+++|+|++ +|++|+|.
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~ 69 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVL 69 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEE
Confidence 58999999999752 0257999999999999999999999999999999999999 99999873
No 123
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=1.6e-14 Score=143.62 Aligned_cols=61 Identities=33% Similarity=0.542 Sum_probs=56.2
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|+++ ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~ 67 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 59999999999753 24699999999999999999999999999999999999999999873
No 124
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.52 E-value=1.9e-14 Score=139.03 Aligned_cols=59 Identities=44% Similarity=0.720 Sum_probs=56.3
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
.|+++|++|+|+++ .++|+|+|++|++||.++|+|+||||||||+++|.|+++|++|+|
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v 61 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEE
Confidence 58999999999865 579999999999999999999999999999999999999999997
No 125
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=1.5e-14 Score=144.74 Aligned_cols=60 Identities=28% Similarity=0.520 Sum_probs=55.7
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
-|+++||+|+|++ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~ 64 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL 64 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEE
Confidence 5999999999963 24699999999999999999999999999999999999999999974
No 126
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.52 E-value=1.9e-14 Score=138.08 Aligned_cols=59 Identities=22% Similarity=0.420 Sum_probs=55.3
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
-|+++|++++|++ +++++|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~ 69 (214)
T PRK13543 11 LLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQ 69 (214)
T ss_pred eEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEE
Confidence 5999999999964 3599999999999999999999999999999999999999999973
No 127
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=1.4e-14 Score=143.67 Aligned_cols=59 Identities=36% Similarity=0.621 Sum_probs=55.5
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 69 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEIL 69 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEE
Confidence 5999999999964 3699999999999999999999999999999999999999999973
No 128
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=1.6e-14 Score=143.97 Aligned_cols=59 Identities=27% Similarity=0.535 Sum_probs=54.9
Q ss_pred EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~ 60 (275)
T PRK13639 2 LETRDLKYSYPDG--TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60 (275)
T ss_pred EEEEEEEEEeCCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEE
Confidence 7899999999742 4699999999999999999999999999999999999999999983
No 129
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.52 E-value=1.6e-14 Score=142.67 Aligned_cols=59 Identities=31% Similarity=0.406 Sum_probs=55.5
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 64 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVH 64 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE
Confidence 5999999999964 4699999999999999999999999999999999999999999973
No 130
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=2e-14 Score=144.13 Aligned_cols=62 Identities=31% Similarity=0.577 Sum_probs=55.9
Q ss_pred cEEEEeeeEECCCCC--CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~--~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++.. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~ 65 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTIT 65 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 488999999997421 14699999999999999999999999999999999999999999873
No 131
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=1.8e-14 Score=143.23 Aligned_cols=61 Identities=38% Similarity=0.637 Sum_probs=56.3
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++|++++|+++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~ 67 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 59999999999742 35799999999999999999999999999999999999999999973
No 132
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=2.7e-14 Score=145.59 Aligned_cols=65 Identities=34% Similarity=0.550 Sum_probs=57.5
Q ss_pred CccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCceeC
Q 010471 445 RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQVC 510 (510)
Q Consensus 445 ~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-----p~sG~I~ 510 (510)
+..+.|+++||+|+|++. ..++|+|+||+|++||++||||+||||||||+++|+|+++ |++|+|.
T Consensus 76 ~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~ 145 (329)
T PRK14257 76 NHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIY 145 (329)
T ss_pred CcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE
Confidence 345689999999999743 3579999999999999999999999999999999999997 5799873
No 133
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.51 E-value=1.4e-14 Score=143.86 Aligned_cols=59 Identities=29% Similarity=0.494 Sum_probs=55.3
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 65 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEIL 65 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 5999999999963 4699999999999999999999999999999999999999999973
No 134
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.51 E-value=1.7e-14 Score=141.80 Aligned_cols=58 Identities=31% Similarity=0.537 Sum_probs=54.7
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 60 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTI 60 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE
Confidence 4899999999964 369999999999999999999999999999999999999999987
No 135
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=1.3e-14 Score=141.70 Aligned_cols=59 Identities=22% Similarity=0.459 Sum_probs=55.2
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~ 61 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNII 61 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 4899999999964 4699999999999999999999999999999999999999999873
No 136
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.51 E-value=1.4e-14 Score=139.75 Aligned_cols=62 Identities=32% Similarity=0.538 Sum_probs=55.9
Q ss_pred cEEEEeeeEECCCCCC------CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPT------VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~------~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
-++.+|++..|+.+.. ..+++||||+|++||+++|||+|||||||+.++|+|+++|++|+|+
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~ 71 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEIL 71 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEE
Confidence 4789999999985321 3689999999999999999999999999999999999999999984
No 137
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.51 E-value=1.7e-14 Score=139.61 Aligned_cols=61 Identities=31% Similarity=0.511 Sum_probs=55.7
Q ss_pred EEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC---CCCceeC
Q 010471 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~---p~sG~I~ 510 (510)
.+|+||+|+|++.+ .+++|+|+||+|++||++||+|+||||||||+|+|+|+++ |++|+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~ 68 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQIL 68 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEE
Confidence 57999999998642 3679999999999999999999999999999999999999 9999873
No 138
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.51 E-value=1.9e-14 Score=141.67 Aligned_cols=59 Identities=32% Similarity=0.398 Sum_probs=55.2
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 61 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTAT 61 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 4899999999964 3599999999999999999999999999999999999999999983
No 139
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=1.9e-14 Score=140.21 Aligned_cols=59 Identities=29% Similarity=0.546 Sum_probs=55.3
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~ 63 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIV 63 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEE
Confidence 4899999999963 4699999999999999999999999999999999999999999873
No 140
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.50 E-value=2.5e-14 Score=142.87 Aligned_cols=61 Identities=39% Similarity=0.593 Sum_probs=56.1
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
-|+++||+++|++. .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~ 65 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT 65 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE
Confidence 48999999999743 24699999999999999999999999999999999999999999973
No 141
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.50 E-value=2e-14 Score=145.32 Aligned_cols=59 Identities=29% Similarity=0.574 Sum_probs=55.3
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~ 62 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKIT 62 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 5899999999963 4699999999999999999999999999999999999999999983
No 142
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.50 E-value=2.4e-14 Score=135.03 Aligned_cols=62 Identities=21% Similarity=0.426 Sum_probs=55.0
Q ss_pred cEEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc--CCCCceeC
Q 010471 449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y--~p~sG~I~ 510 (510)
.|+++|++|+|+++. ++++|+|+||+|++||+++|+|+||||||||+++|+|++ +|++|+|.
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~ 67 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEIL 67 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEE
Confidence 589999999997421 246999999999999999999999999999999999987 48999873
No 143
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.50 E-value=2.1e-14 Score=141.76 Aligned_cols=61 Identities=33% Similarity=0.569 Sum_probs=56.5
Q ss_pred cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
++.|+++||+++|++ +.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~ 63 (257)
T PRK10619 3 ENKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIV 63 (257)
T ss_pred CccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 356999999999964 4699999999999999999999999999999999999999999873
No 144
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.50 E-value=1.9e-14 Score=141.76 Aligned_cols=59 Identities=25% Similarity=0.558 Sum_probs=55.3
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 63 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIL 63 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEE
Confidence 4999999999963 4699999999999999999999999999999999999999999873
No 145
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.50 E-value=3.1e-14 Score=142.41 Aligned_cols=61 Identities=36% Similarity=0.647 Sum_probs=55.8
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC---cee
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQV 509 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s---G~I 509 (510)
..|+++|++|+|++. ..++|+|+||+|++||.+||+|+||||||||+++|+|+++|++ |+|
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i 67 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKI 67 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEE
Confidence 469999999999753 2469999999999999999999999999999999999999998 787
No 146
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.50 E-value=2.7e-14 Score=141.14 Aligned_cols=61 Identities=34% Similarity=0.606 Sum_probs=55.5
Q ss_pred cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCceeC
Q 010471 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQVC 510 (510)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-----p~sG~I~ 510 (510)
.+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~ 76 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEIL 76 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEE
Confidence 457999999999964 369999999999999999999999999999999999997 5899873
No 147
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.50 E-value=2.5e-14 Score=141.06 Aligned_cols=58 Identities=31% Similarity=0.595 Sum_probs=54.6
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
.|+++||+++|++ .++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i 59 (255)
T PRK11231 2 TLRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTV 59 (255)
T ss_pred EEEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEE
Confidence 3889999999963 469999999999999999999999999999999999999999987
No 148
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.50 E-value=2.2e-14 Score=130.77 Aligned_cols=60 Identities=35% Similarity=0.655 Sum_probs=55.7
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
....++++-+|++.+ +.+|+|+|++|.+||.++++||||||||||+|+++||.+|+.|+|
T Consensus 3 ~l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i 62 (259)
T COG4525 3 MLNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSI 62 (259)
T ss_pred eeehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceE
Confidence 456789999998764 679999999999999999999999999999999999999999997
No 149
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.49 E-value=2.5e-14 Score=140.64 Aligned_cols=59 Identities=29% Similarity=0.578 Sum_probs=55.3
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~ 62 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK 62 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 4899999999964 3699999999999999999999999999999999999999999983
No 150
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.49 E-value=2.9e-14 Score=138.64 Aligned_cols=60 Identities=48% Similarity=0.850 Sum_probs=55.0
Q ss_pred EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++|++++|+++ +.++++|+||++++||.++|+|+||||||||+++|+|+++|++|+|.
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 60 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEE
Confidence 5789999999753 24699999999999999999999999999999999999999999873
No 151
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.49 E-value=2.8e-14 Score=140.97 Aligned_cols=59 Identities=36% Similarity=0.526 Sum_probs=55.1
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~ 60 (258)
T PRK13548 2 MLEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVR 60 (258)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE
Confidence 4889999999974 4699999999999999999999999999999999999999999973
No 152
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.49 E-value=2.7e-14 Score=139.61 Aligned_cols=59 Identities=24% Similarity=0.489 Sum_probs=55.0
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
-|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.
T Consensus 2 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~ 60 (242)
T TIGR03411 2 ILYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVL 60 (242)
T ss_pred eEEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE
Confidence 3789999999974 3699999999999999999999999999999999999999999873
No 153
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.49 E-value=2.8e-14 Score=141.67 Aligned_cols=62 Identities=39% Similarity=0.638 Sum_probs=55.8
Q ss_pred cEEEEeeeEECCCC------CCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~------~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
-|+++||+|+|++. .++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~ 70 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVS 70 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 48999999999731 125799999999999999999999999999999999999999999873
No 154
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.48 E-value=3.1e-14 Score=141.31 Aligned_cols=61 Identities=31% Similarity=0.431 Sum_probs=56.0
Q ss_pred cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCceeC
Q 010471 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQVC 510 (510)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I~ 510 (510)
++.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~ 82 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKIT 82 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEE
Confidence 458999999999964 4699999999999999999999999999999999999985 899873
No 155
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=4e-14 Score=139.29 Aligned_cols=61 Identities=28% Similarity=0.506 Sum_probs=55.0
Q ss_pred cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC--C---CCceeC
Q 010471 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQVC 510 (510)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~--p---~sG~I~ 510 (510)
++.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|+|+++ | ++|+|.
T Consensus 2 ~~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~ 67 (252)
T PRK14256 2 NNKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKIL 67 (252)
T ss_pred CcEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEE
Confidence 467999999999963 469999999999999999999999999999999999986 4 689873
No 156
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.48 E-value=3.8e-14 Score=144.41 Aligned_cols=62 Identities=35% Similarity=0.605 Sum_probs=55.9
Q ss_pred cEEEEeeeEECCCCC-------CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRP-------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~-------~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
-|+++|++++|+.+. ...+|+||||+|++||++||||+||||||||+++|+|+++|++|+|.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~ 73 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELY 73 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEE
Confidence 489999999997421 24699999999999999999999999999999999999999999983
No 157
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.48 E-value=2.9e-14 Score=137.83 Aligned_cols=58 Identities=26% Similarity=0.452 Sum_probs=52.6
Q ss_pred EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
+..+|++.+|.+ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~ 80 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVT 80 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 667777888853 4699999999999999999999999999999999999999999973
No 158
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.48 E-value=4.2e-14 Score=134.00 Aligned_cols=46 Identities=35% Similarity=0.640 Sum_probs=44.1
Q ss_pred CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 464 ~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
...+|+||||++++||+++|||++|||||||+|+|+|.|+|++|+|
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v 84 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceE
Confidence 3569999999999999999999999999999999999999999997
No 159
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.48 E-value=4.5e-14 Score=138.75 Aligned_cols=60 Identities=35% Similarity=0.621 Sum_probs=54.5
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I~ 510 (510)
+.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|+|+++| ++|+|.
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~ 66 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVL 66 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE
Confidence 57999999999974 3699999999999999999999999999999999999873 689873
No 160
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.48 E-value=4.3e-14 Score=140.18 Aligned_cols=60 Identities=27% Similarity=0.487 Sum_probs=56.1
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
..|+++||+++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~ 65 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVW 65 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEE
Confidence 47999999999974 3699999999999999999999999999999999999999999873
No 161
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=5.2e-14 Score=139.87 Aligned_cols=60 Identities=28% Similarity=0.447 Sum_probs=55.2
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-----p~sG~I~ 510 (510)
..|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~ 76 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVL 76 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE
Confidence 46999999999964 369999999999999999999999999999999999998 6899873
No 162
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.47 E-value=4.6e-14 Score=142.73 Aligned_cols=60 Identities=23% Similarity=0.528 Sum_probs=56.0
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
..|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~ 65 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS 65 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 46999999999963 4699999999999999999999999999999999999999999973
No 163
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.47 E-value=4.5e-14 Score=144.54 Aligned_cols=59 Identities=24% Similarity=0.548 Sum_probs=55.5
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~ 99 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKIT 99 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEE
Confidence 5999999999964 4699999999999999999999999999999999999999999973
No 164
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=5e-14 Score=138.68 Aligned_cols=59 Identities=37% Similarity=0.528 Sum_probs=54.3
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC-----CceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~-----sG~I~ 510 (510)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~ 67 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVR 67 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEE
Confidence 5899999999964 36999999999999999999999999999999999999984 99873
No 165
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.47 E-value=5.2e-14 Score=140.01 Aligned_cols=59 Identities=36% Similarity=0.558 Sum_probs=54.7
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-----p~sG~I~ 510 (510)
.|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~ 87 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKIL 87 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEE
Confidence 6999999999964 369999999999999999999999999999999999997 6999873
No 166
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.47 E-value=5e-14 Score=145.09 Aligned_cols=60 Identities=22% Similarity=0.460 Sum_probs=55.5
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|+++ ..+|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.
T Consensus 3 ~l~i~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~ 62 (356)
T PRK11650 3 GLKLQAVRKSYDGK--TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIW 62 (356)
T ss_pred EEEEEeEEEEeCCC--CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEE
Confidence 48999999999532 4699999999999999999999999999999999999999999984
No 167
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.47 E-value=5.4e-14 Score=139.57 Aligned_cols=61 Identities=26% Similarity=0.416 Sum_probs=55.4
Q ss_pred cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCceeC
Q 010471 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQVC 510 (510)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-----p~sG~I~ 510 (510)
...|+++||+|+|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++ |++|+|.
T Consensus 18 ~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 83 (267)
T PRK14237 18 EIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL 83 (267)
T ss_pred CeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEE
Confidence 347999999999963 469999999999999999999999999999999999997 5899873
No 168
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=6.4e-14 Score=138.03 Aligned_cols=59 Identities=32% Similarity=0.558 Sum_probs=54.4
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC-----CceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~-----sG~I~ 510 (510)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|+
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 70 (254)
T PRK14273 7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVI 70 (254)
T ss_pred eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEE
Confidence 5999999999964 36999999999999999999999999999999999999974 89873
No 169
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.47 E-value=5.1e-14 Score=138.61 Aligned_cols=59 Identities=34% Similarity=0.609 Sum_probs=53.9
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-----p~sG~I~ 510 (510)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 69 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEIL 69 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEE
Confidence 5999999999963 369999999999999999999999999999999999975 6899873
No 170
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.47 E-value=3e-14 Score=141.54 Aligned_cols=57 Identities=37% Similarity=0.498 Sum_probs=51.6
Q ss_pred EEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.++||+.+|.+ ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~ 82 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVL 82 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE
Confidence 56688888853 4699999999999999999999999999999999999999999873
No 171
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.47 E-value=5.2e-14 Score=139.01 Aligned_cols=59 Identities=34% Similarity=0.512 Sum_probs=54.2
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I~ 510 (510)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~ 67 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVL 67 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEE
Confidence 5899999999974 3699999999999999999999999999999999999975 699873
No 172
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.47 E-value=5.5e-14 Score=138.27 Aligned_cols=59 Identities=29% Similarity=0.438 Sum_probs=54.8
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc--cCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~--y~p~sG~I~ 510 (510)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~ 67 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDIL 67 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEE
Confidence 4999999999974 3699999999999999999999999999999999998 789999873
No 173
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.46 E-value=5.3e-14 Score=144.53 Aligned_cols=59 Identities=32% Similarity=0.578 Sum_probs=55.5
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ ..+|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|+
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~ 64 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIF 64 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEE
Confidence 6999999999963 4699999999999999999999999999999999999999999984
No 174
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.46 E-value=8e-14 Score=138.45 Aligned_cols=59 Identities=31% Similarity=0.554 Sum_probs=54.1
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-----p~sG~I~ 510 (510)
.|+++|++|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 84 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEIL 84 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEE
Confidence 5999999999963 469999999999999999999999999999999999875 7999873
No 175
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.46 E-value=7e-14 Score=136.19 Aligned_cols=61 Identities=36% Similarity=0.584 Sum_probs=55.9
Q ss_pred EEEEeeeEECCCC--CCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~--~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++|||+.|+.. ....+|+||||+|++||+.+|||+||+|||||++++-||-.|++|+|.
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~ 64 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVF 64 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEE
Confidence 8999999999862 124699999999999999999999999999999999999999999984
No 176
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.46 E-value=6.3e-14 Score=137.76 Aligned_cols=59 Identities=29% Similarity=0.510 Sum_probs=54.1
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-----p~sG~I~ 510 (510)
.|+++||+|+|++ .++|+|+||+|++||.+||+|+||||||||+++|+|+++ |++|+|.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~ 67 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIK 67 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEE
Confidence 5899999999964 469999999999999999999999999999999999997 4799873
No 177
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.46 E-value=5.7e-14 Score=143.14 Aligned_cols=62 Identities=24% Similarity=0.383 Sum_probs=54.8
Q ss_pred cEEEEeeeEECCCCCC-CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC----CCCceeC
Q 010471 449 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE----PSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~-~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~----p~sG~I~ 510 (510)
-|+++||+++|+++.+ ..+|+||||+|++||++||||+||||||||+++|+|+++ |++|+|.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~ 69 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLE 69 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEE
Confidence 4899999999975322 359999999999999999999999999999999999998 4889873
No 178
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.46 E-value=6.9e-14 Score=138.13 Aligned_cols=60 Identities=33% Similarity=0.570 Sum_probs=54.9
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I~ 510 (510)
..|+++||+++|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++| ++|+|.
T Consensus 11 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~ 75 (258)
T PRK14268 11 PQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVS 75 (258)
T ss_pred eeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEE
Confidence 36999999999963 4699999999999999999999999999999999999985 799873
No 179
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.46 E-value=4.9e-14 Score=130.39 Aligned_cols=56 Identities=29% Similarity=0.447 Sum_probs=52.3
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s 506 (510)
..++.+|+++.|.+ ..+|+|||++||+++++|++|||||||||+++.+-|+.|..+
T Consensus 6 ~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~ 61 (253)
T COG1117 6 PAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIP 61 (253)
T ss_pred ceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCc
Confidence 46999999999963 569999999999999999999999999999999999999987
No 180
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.46 E-value=6.3e-14 Score=145.18 Aligned_cols=59 Identities=32% Similarity=0.496 Sum_probs=55.3
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~ 61 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLF 61 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Confidence 5899999999964 4699999999999999999999999999999999999999999983
No 181
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.46 E-value=4.1e-14 Score=126.40 Aligned_cols=62 Identities=39% Similarity=0.510 Sum_probs=55.3
Q ss_pred cEEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
-|+.+|++..-++.. ...+|++|+|.|++||.+|||||||||||||+.+|+|+-+|++|+|+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~ 68 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVR 68 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEE
Confidence 578888888876543 34699999999999999999999999999999999999999999984
No 182
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.46 E-value=6.3e-14 Score=144.17 Aligned_cols=59 Identities=24% Similarity=0.473 Sum_probs=55.4
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~ 62 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIY 62 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEE
Confidence 5999999999964 4599999999999999999999999999999999999999999984
No 183
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.46 E-value=6.8e-14 Score=143.93 Aligned_cols=59 Identities=29% Similarity=0.561 Sum_probs=55.2
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ ..+|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|+
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~ 60 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIR 60 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 4899999999964 3699999999999999999999999999999999999999999984
No 184
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.46 E-value=6.9e-14 Score=137.42 Aligned_cols=59 Identities=34% Similarity=0.571 Sum_probs=54.1
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I~ 510 (510)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~ 66 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVY 66 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEE
Confidence 4899999999964 3699999999999999999999999999999999999984 699873
No 185
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.45 E-value=8e-14 Score=137.33 Aligned_cols=58 Identities=33% Similarity=0.528 Sum_probs=54.3
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC----CCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP----SDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p----~sG~I~ 510 (510)
.|+++||+++| + +++|+|+||+|++||.++|+|+||||||||+++|+|+++| ++|+|.
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~ 65 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVL 65 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEE
Confidence 59999999999 3 3699999999999999999999999999999999999999 999873
No 186
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.45 E-value=7.2e-14 Score=142.56 Aligned_cols=62 Identities=29% Similarity=0.557 Sum_probs=55.9
Q ss_pred cEEEEeeeEECCCCC----------CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRP----------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~----------~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
-|+++|++.+|+.+. ...+++|+||+|++||++||||+||||||||+++|+|+++|++|+|.
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~ 79 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVA 79 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEE
Confidence 489999999997321 24699999999999999999999999999999999999999999984
No 187
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=8.8e-14 Score=136.77 Aligned_cols=59 Identities=27% Similarity=0.544 Sum_probs=54.6
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC-----Ccee
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQV 509 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~-----sG~I 509 (510)
..|+++||+|+|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|
T Consensus 3 ~~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v 66 (251)
T PRK14249 3 PKIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAV 66 (251)
T ss_pred ceEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEE
Confidence 46999999999964 46999999999999999999999999999999999999997 5887
No 188
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=7.7e-14 Score=137.07 Aligned_cols=59 Identities=27% Similarity=0.474 Sum_probs=54.2
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I~ 510 (510)
.|+++||+|+|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~ 66 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIY 66 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEE
Confidence 4899999999963 4699999999999999999999999999999999999984 899873
No 189
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=7.5e-14 Score=136.85 Aligned_cols=59 Identities=32% Similarity=0.517 Sum_probs=54.0
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC---CCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~---p~sG~I~ 510 (510)
.|+++||++.|++ +++|+|+||+|++||.++|+|+||||||||+++|+|+++ |++|+|.
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~ 63 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVE 63 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEE
Confidence 4889999999974 469999999999999999999999999999999999985 7999873
No 190
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.45 E-value=9.8e-14 Score=143.60 Aligned_cols=60 Identities=27% Similarity=0.490 Sum_probs=55.9
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
..|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.
T Consensus 13 ~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~ 72 (375)
T PRK09452 13 PLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIM 72 (375)
T ss_pred ceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Confidence 35999999999964 4699999999999999999999999999999999999999999984
No 191
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=8.7e-14 Score=137.48 Aligned_cols=59 Identities=36% Similarity=0.543 Sum_probs=53.9
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC--C---CCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~--p---~sG~I~ 510 (510)
.|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~ 75 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMN 75 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEE
Confidence 5999999999964 369999999999999999999999999999999999997 3 589873
No 192
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=1.4e-13 Score=137.80 Aligned_cols=60 Identities=28% Similarity=0.527 Sum_probs=55.1
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-----p~sG~I~ 510 (510)
..|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~ 102 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELT 102 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEE
Confidence 46999999999964 469999999999999999999999999999999999997 6899873
No 193
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=1.1e-13 Score=136.46 Aligned_cols=59 Identities=31% Similarity=0.468 Sum_probs=54.8
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
..|+++|++++|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|
T Consensus 9 ~~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v 67 (257)
T PRK14246 9 DVFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKI 67 (257)
T ss_pred hheeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCce
Confidence 35999999999964 469999999999999999999999999999999999999999765
No 194
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.44 E-value=1.4e-13 Score=137.08 Aligned_cols=60 Identities=27% Similarity=0.464 Sum_probs=54.9
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I~ 510 (510)
+.|+++||+|+|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++| ++|+|.
T Consensus 24 ~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~ 88 (272)
T PRK14236 24 TALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIR 88 (272)
T ss_pred cEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEE
Confidence 46999999999964 3699999999999999999999999999999999999984 899873
No 195
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.44 E-value=9.9e-14 Score=144.52 Aligned_cols=59 Identities=24% Similarity=0.495 Sum_probs=55.4
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ +++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~ 61 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVL 61 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEE
Confidence 4899999999964 4699999999999999999999999999999999999999999984
No 196
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.44 E-value=1.1e-13 Score=142.58 Aligned_cols=61 Identities=26% Similarity=0.562 Sum_probs=56.7
Q ss_pred cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC--ceeC
Q 010471 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD--GQVC 510 (510)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s--G~I~ 510 (510)
.+.|+++||+++|++ ..+|+|+||+|++||.+||+||||||||||+++|+|+++|++ |+|.
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~ 65 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIA 65 (362)
T ss_pred ceEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEE
Confidence 367999999999964 469999999999999999999999999999999999999999 9973
No 197
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.44 E-value=1.3e-13 Score=140.78 Aligned_cols=62 Identities=26% Similarity=0.424 Sum_probs=55.6
Q ss_pred cEEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC---CceeC
Q 010471 449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~---sG~I~ 510 (510)
-++++|++++|+++. ...+++|+||+|++||++||||+||||||||+++|+|+++|+ +|+|.
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~ 77 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSAT 77 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEE
Confidence 589999999996432 246999999999999999999999999999999999999996 99873
No 198
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=1.3e-13 Score=136.14 Aligned_cols=60 Identities=35% Similarity=0.543 Sum_probs=54.6
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I~ 510 (510)
+.|+++||+++|++ +++|+|+||+|++||.+||+|+||||||||+|+|+|+++| ++|+|.
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~ 70 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVD 70 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEE
Confidence 46999999999963 4699999999999999999999999999999999999986 489873
No 199
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.44 E-value=1.1e-13 Score=137.26 Aligned_cols=59 Identities=32% Similarity=0.489 Sum_probs=53.9
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-----p~sG~I~ 510 (510)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 73 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVT 73 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEE
Confidence 5999999999963 369999999999999999999999999999999999987 4799873
No 200
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.43 E-value=1.2e-13 Score=135.77 Aligned_cols=59 Identities=24% Similarity=0.455 Sum_probs=53.9
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC-----CceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~-----sG~I~ 510 (510)
-|+++||+++|++ +++|+|+||+|++||.+||+|+||||||||+|+|+|+++|+ +|+|.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~ 67 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRIL 67 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEE
Confidence 4889999999963 46999999999999999999999999999999999999875 79873
No 201
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.43 E-value=1.1e-13 Score=139.76 Aligned_cols=59 Identities=22% Similarity=0.441 Sum_probs=55.0
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.
T Consensus 2 ~l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~ 60 (301)
T TIGR03522 2 SIRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQ 60 (301)
T ss_pred EEEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 3889999999963 4699999999999999999999999999999999999999999983
No 202
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.43 E-value=1.5e-13 Score=136.21 Aligned_cols=61 Identities=25% Similarity=0.489 Sum_probs=55.4
Q ss_pred cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCceeC
Q 010471 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQVC 510 (510)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I~ 510 (510)
.+.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|+
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~ 79 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEII 79 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEE
Confidence 457999999999974 3699999999999999999999999999999999999985 789873
No 203
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.43 E-value=1.3e-13 Score=137.54 Aligned_cols=59 Identities=29% Similarity=0.542 Sum_probs=54.5
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I~ 510 (510)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~ 84 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVL 84 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEE
Confidence 5899999999964 4699999999999999999999999999999999999996 699873
No 204
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.43 E-value=1.4e-13 Score=136.27 Aligned_cols=58 Identities=29% Similarity=0.415 Sum_probs=53.5
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC---cee
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQV 509 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s---G~I 509 (510)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++ |+|
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i 64 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHI 64 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEE
Confidence 4899999999964 469999999999999999999999999999999999999874 876
No 205
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.43 E-value=9.4e-14 Score=135.33 Aligned_cols=46 Identities=37% Similarity=0.660 Sum_probs=44.0
Q ss_pred CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~ 79 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVR 79 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 4699999999999999999999999999999999999999999973
No 206
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.43 E-value=1.6e-13 Score=134.94 Aligned_cols=60 Identities=33% Similarity=0.515 Sum_probs=54.7
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I~ 510 (510)
..|+++||+++|++ .++|+|+||+|++||.++|+|+||||||||+++|+|+++| ++|+|.
T Consensus 3 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~ 67 (251)
T PRK14270 3 IKMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVL 67 (251)
T ss_pred cEEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEE
Confidence 36899999999963 4699999999999999999999999999999999999986 799873
No 207
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.42 E-value=1.7e-13 Score=134.85 Aligned_cols=59 Identities=36% Similarity=0.560 Sum_probs=53.2
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC--C---CCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~--p---~sG~I~ 510 (510)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~ 68 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIV 68 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEE
Confidence 4899999999964 369999999999999999999999999999999999954 6 489873
No 208
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.42 E-value=1.6e-13 Score=135.00 Aligned_cols=59 Identities=27% Similarity=0.450 Sum_probs=53.3
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I~ 510 (510)
.|+++||+|+|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+.+| ++|+|.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 69 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDIL 69 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEE
Confidence 5999999999964 4699999999999999999999999999999999999863 489873
No 209
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.42 E-value=1.7e-13 Score=139.99 Aligned_cols=62 Identities=21% Similarity=0.371 Sum_probs=54.7
Q ss_pred cEEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC----CCCceeC
Q 010471 449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE----PSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~----p~sG~I~ 510 (510)
-|+++||+++|+.+. ...+|+|+||+|++||++||||+||||||||+++|+|+.+ |++|+|.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~ 69 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMR 69 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEE
Confidence 389999999996432 2469999999999999999999999999999999999986 6899873
No 210
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.42 E-value=2e-13 Score=144.41 Aligned_cols=63 Identities=30% Similarity=0.469 Sum_probs=57.8
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
..++++|++|+|+++..+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~ 82 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVD 82 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 369999999999865445799999999999999999999999999999999999999999983
No 211
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.42 E-value=2.4e-13 Score=134.47 Aligned_cols=59 Identities=41% Similarity=0.614 Sum_probs=53.9
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC-----Ccee
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQV 509 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~-----sG~I 509 (510)
+.|+++||+|+|++ ..+|+|+||+|++||.+||+|+||||||||+++|+|+++|+ +|+|
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i 69 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRV 69 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceE
Confidence 46999999999964 35999999999999999999999999999999999999985 6765
No 212
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.41 E-value=2.4e-13 Score=136.25 Aligned_cols=60 Identities=33% Similarity=0.457 Sum_probs=54.2
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-----p~sG~I~ 510 (510)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~ 102 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALM 102 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEE
Confidence 46999999999964 359999999999999999999999999999999999865 4999873
No 213
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.41 E-value=2.5e-13 Score=146.46 Aligned_cols=59 Identities=27% Similarity=0.322 Sum_probs=55.1
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~ 61 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQ 61 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEE
Confidence 4899999999964 3599999999999999999999999999999999999999999973
No 214
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.41 E-value=2.3e-13 Score=133.92 Aligned_cols=59 Identities=31% Similarity=0.549 Sum_probs=53.4
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC--C---CCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~--p---~sG~I~ 510 (510)
.|+++||+++|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++ | ++|+|.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 68 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVS 68 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEE
Confidence 4899999999963 469999999999999999999999999999999999975 5 589873
No 215
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.41 E-value=2.1e-13 Score=133.95 Aligned_cols=58 Identities=31% Similarity=0.508 Sum_probs=53.7
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCcee
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQV 509 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I 509 (510)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v 65 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKL 65 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEE
Confidence 5899999999963 4699999999999999999999999999999999999996 58986
No 216
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=3.1e-13 Score=140.12 Aligned_cols=61 Identities=30% Similarity=0.507 Sum_probs=56.4
Q ss_pred cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
...|+++||+++|++ ..+|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|+
T Consensus 17 ~~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~ 77 (377)
T PRK11607 17 TPLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIM 77 (377)
T ss_pred CceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Confidence 346999999999963 3699999999999999999999999999999999999999999984
No 217
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.41 E-value=3.4e-13 Score=134.33 Aligned_cols=59 Identities=27% Similarity=0.464 Sum_probs=53.9
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCcee
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQV 509 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I 509 (510)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|
T Consensus 19 ~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 82 (274)
T PRK14265 19 SVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRL 82 (274)
T ss_pred ceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceE
Confidence 47999999999964 3699999999999999999999999999999999999974 58987
No 218
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.40 E-value=4e-13 Score=127.27 Aligned_cols=59 Identities=32% Similarity=0.470 Sum_probs=55.4
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
.-|+++||+.+|.+ +++|+|||.+|++||..+|+|++|||||||++++.|.+.|++|.+
T Consensus 30 ~li~l~~v~v~r~g---k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~ 88 (257)
T COG1119 30 PLIELKNVSVRRNG---KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88 (257)
T ss_pred ceEEecceEEEECC---EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCce
Confidence 35999999999964 579999999999999999999999999999999999999999976
No 219
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.40 E-value=2.6e-13 Score=123.73 Aligned_cols=57 Identities=40% Similarity=0.706 Sum_probs=52.8
Q ss_pred EEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
+++|++|+|++ .++|+|+|++|++||.++|+|+||||||||+++|.|+++|++|+|.
T Consensus 1 ~~~~~~~~~~~---~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~ 57 (157)
T cd00267 1 EIENLSFRYGG---RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57 (157)
T ss_pred CeEEEEEEeCC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEE
Confidence 36899999974 3699999999999999999999999999999999999999999873
No 220
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.40 E-value=2.3e-13 Score=133.80 Aligned_cols=59 Identities=36% Similarity=0.532 Sum_probs=53.2
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-----p~sG~I~ 510 (510)
+-+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.
T Consensus 5 ~~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~ 68 (251)
T PRK14244 5 HASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELD 68 (251)
T ss_pred EEEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEE
Confidence 4578999999963 469999999999999999999999999999999999986 4799873
No 221
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.40 E-value=4.1e-13 Score=135.80 Aligned_cols=61 Identities=31% Similarity=0.459 Sum_probs=55.4
Q ss_pred cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCceeC
Q 010471 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQVC 510 (510)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-----p~sG~I~ 510 (510)
+..|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.
T Consensus 43 ~~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~ 108 (305)
T PRK14264 43 DAKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVE 108 (305)
T ss_pred CceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE
Confidence 346999999999974 469999999999999999999999999999999999996 6899873
No 222
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.40 E-value=3.3e-13 Score=147.49 Aligned_cols=59 Identities=22% Similarity=0.415 Sum_probs=55.3
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
.|+++||+++|++ ++++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i 64 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEA 64 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 5999999999962 2469999999999999999999999999999999999999999997
No 223
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.39 E-value=7.8e-14 Score=132.00 Aligned_cols=58 Identities=31% Similarity=0.637 Sum_probs=53.9
Q ss_pred EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.+.+|++-+|.+ -.+++||||++++||.+||+||+||||||++|++.|+|+|++|+|.
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~ 62 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVI 62 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEE
Confidence 568899999964 4699999999999999999999999999999999999999999984
No 224
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.39 E-value=3e-13 Score=146.14 Aligned_cols=59 Identities=31% Similarity=0.538 Sum_probs=55.2
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~ 62 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSIL 62 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 4899999999963 4699999999999999999999999999999999999999999983
No 225
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.39 E-value=3.3e-13 Score=135.44 Aligned_cols=60 Identities=25% Similarity=0.559 Sum_probs=55.6
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+-+|.+ ++.+|+||||+|++||++|++||||||||||+|+|+|+..|++|+|.
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~ 63 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL 63 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 5889999999963 24699999999999999999999999999999999999999999984
No 226
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.39 E-value=3.4e-13 Score=141.30 Aligned_cols=59 Identities=34% Similarity=0.589 Sum_probs=55.9
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
-++++|++-+|++ .++|+|+||++.+||+.||+|+||+|||||+|.|.|.|+|++|+|+
T Consensus 8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~ 66 (500)
T COG1129 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEIL 66 (500)
T ss_pred eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEE
Confidence 4889999999974 5799999999999999999999999999999999999999999984
No 227
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.39 E-value=4.1e-13 Score=141.62 Aligned_cols=62 Identities=35% Similarity=0.555 Sum_probs=55.7
Q ss_pred cEEEEeeeEECCCCC--------CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRP--------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~--------~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
-++++|++.+|..++ ...+++||||++++||++||||+||||||||++.|+|+.+|++|+|.
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~ 349 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSII 349 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 477999999998421 24689999999999999999999999999999999999999999983
No 228
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.38 E-value=4.8e-13 Score=146.20 Aligned_cols=59 Identities=22% Similarity=0.410 Sum_probs=55.0
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
-|+++||+++|++ ++++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i 62 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEA 62 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 4899999999962 2469999999999999999999999999999999999999999997
No 229
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.38 E-value=3.6e-13 Score=145.86 Aligned_cols=59 Identities=31% Similarity=0.521 Sum_probs=55.2
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~ 63 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTIT 63 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEE
Confidence 4899999999963 4699999999999999999999999999999999999999999973
No 230
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.38 E-value=4e-13 Score=145.19 Aligned_cols=59 Identities=31% Similarity=0.576 Sum_probs=55.2
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~ 62 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSIL 62 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE
Confidence 4899999999964 3699999999999999999999999999999999999999999983
No 231
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.38 E-value=5.2e-13 Score=144.54 Aligned_cols=59 Identities=31% Similarity=0.492 Sum_probs=55.4
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ +.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~ 69 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLE 69 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 5999999999963 4699999999999999999999999999999999999999999973
No 232
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.38 E-value=5e-13 Score=131.34 Aligned_cols=59 Identities=32% Similarity=0.594 Sum_probs=52.7
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc---cCC--CCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL---YEP--SDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~---y~p--~sG~I~ 510 (510)
.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|+|+ ++| ++|+|.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~ 66 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIR 66 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEE
Confidence 5899999999963 4699999999999999999999999999999999997 454 589873
No 233
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.37 E-value=5.3e-13 Score=147.61 Aligned_cols=61 Identities=30% Similarity=0.484 Sum_probs=55.8
Q ss_pred cEEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
-|+++|++++|++.. +.++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i 73 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLV 73 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEE
Confidence 599999999996422 2469999999999999999999999999999999999999999987
No 234
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.37 E-value=5.9e-13 Score=130.82 Aligned_cols=59 Identities=34% Similarity=0.586 Sum_probs=53.3
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-----p~sG~I~ 510 (510)
.|+++||+++|++ +++|+|+||+|++||.++|+|+||||||||+++|+|+.+ |++|+|.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~ 66 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIY 66 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEE
Confidence 4889999999963 469999999999999999999999999999999999975 4899873
No 235
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=5.6e-13 Score=144.24 Aligned_cols=62 Identities=23% Similarity=0.518 Sum_probs=55.5
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-CCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-p~sG~I~ 510 (510)
.|+++||+++|+++++.++|+|+||+|++||++||+|+||||||||+|+|+|+++ |++|+|.
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~ 321 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIF 321 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEE
Confidence 5999999999963223469999999999999999999999999999999999999 5999983
No 236
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.36 E-value=6.6e-13 Score=131.40 Aligned_cols=46 Identities=33% Similarity=0.533 Sum_probs=43.8
Q ss_pred CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~ 82 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD 82 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 4589999999999999999999999999999999999999999873
No 237
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.36 E-value=6.8e-13 Score=144.07 Aligned_cols=62 Identities=34% Similarity=0.595 Sum_probs=56.1
Q ss_pred cEEEEeeeEECCC--CCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPS--RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~--~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ +.+.++|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~ 342 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVN 342 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 5999999999963 1124699999999999999999999999999999999999999999983
No 238
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=7.8e-13 Score=143.11 Aligned_cols=59 Identities=31% Similarity=0.574 Sum_probs=54.6
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC--CCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p--~sG~I~ 510 (510)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++| ++|+|.
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~ 65 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEII 65 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEE
Confidence 4999999999963 4699999999999999999999999999999999999997 899973
No 239
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.36 E-value=7.8e-13 Score=146.68 Aligned_cols=59 Identities=31% Similarity=0.492 Sum_probs=55.1
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
-|+++||+++|++ .++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.
T Consensus 3 ~l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~ 61 (635)
T PRK11147 3 LISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRII 61 (635)
T ss_pred EEEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEE
Confidence 4899999999964 4699999999999999999999999999999999999999999973
No 240
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.35 E-value=9.2e-13 Score=143.35 Aligned_cols=60 Identities=30% Similarity=0.524 Sum_probs=55.9
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
..|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 318 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~ 377 (530)
T PRK15064 318 NALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVK 377 (530)
T ss_pred ceEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 36999999999964 3699999999999999999999999999999999999999999983
No 241
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.35 E-value=8.5e-13 Score=146.03 Aligned_cols=62 Identities=35% Similarity=0.513 Sum_probs=55.9
Q ss_pred cEEEEeeeEECCCCC--------CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRP--------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~--------~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
-++++||+++|+.+. +..+|+|+||+|++||++||||+||||||||+++|+|+.+|++|+|.
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~ 382 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEII 382 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEE
Confidence 599999999996321 24699999999999999999999999999999999999999999984
No 242
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.35 E-value=9.9e-13 Score=143.06 Aligned_cols=61 Identities=36% Similarity=0.539 Sum_probs=54.9
Q ss_pred cEEEEeeeEECCCC-CCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCcee
Q 010471 449 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQV 509 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~-~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I 509 (510)
.|+++||+++|+++ .++++|+|+||+|++||++||||+||||||||+++|+|+++| ++|+|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i 71 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDI 71 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEE
Confidence 48999999999732 124699999999999999999999999999999999999997 79987
No 243
>PLN03073 ABC transporter F family; Provisional
Probab=99.34 E-value=1.1e-12 Score=146.17 Aligned_cols=61 Identities=31% Similarity=0.550 Sum_probs=56.2
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.-|+++||+|+|+++ ..+|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.
T Consensus 507 ~~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~ 567 (718)
T PLN03073 507 PIISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVF 567 (718)
T ss_pred ceEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEE
Confidence 369999999999643 3699999999999999999999999999999999999999999983
No 244
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=1.1e-12 Score=136.55 Aligned_cols=58 Identities=43% Similarity=0.512 Sum_probs=48.4
Q ss_pred EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
+++++|.-.|.. ..+|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.
T Consensus 29 ~~~~~~~~~~~~---~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~ 86 (400)
T PRK10070 29 LSKEQILEKTGL---SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVL 86 (400)
T ss_pred ccHHHHHhhcCC---eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEE
Confidence 444444444421 2489999999999999999999999999999999999999999983
No 245
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=1.5e-12 Score=144.30 Aligned_cols=60 Identities=25% Similarity=0.444 Sum_probs=55.9
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
..|+++||+++|++ ..+|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.
T Consensus 311 ~~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~ 370 (638)
T PRK10636 311 PLLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIG 370 (638)
T ss_pred ceEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE
Confidence 35999999999964 4699999999999999999999999999999999999999999983
No 246
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.32 E-value=1.6e-12 Score=144.21 Aligned_cols=59 Identities=17% Similarity=0.475 Sum_probs=55.4
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
-|+++||+++|++ ..+|+|+||+|++|+++||||+||||||||+++|+|+++|++|+|.
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~ 377 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIH 377 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE
Confidence 5999999999964 3699999999999999999999999999999999999999999983
No 247
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.32 E-value=1.6e-12 Score=140.61 Aligned_cols=62 Identities=21% Similarity=0.423 Sum_probs=55.2
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-CCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-~sG~I~ 510 (510)
-|+++|++++|+++.+..+|+|+||+|++||++||+|+||||||||+|+|+|+++| ++|+|.
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~ 319 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVF 319 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEE
Confidence 59999999999532224699999999999999999999999999999999999996 899983
No 248
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.32 E-value=1.8e-12 Score=128.27 Aligned_cols=59 Identities=25% Similarity=0.354 Sum_probs=53.9
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I~ 510 (510)
.+.+++++++|.+ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~ 71 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVH 71 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEE
Confidence 4889999999953 4699999999999999999999999999999999999987 799873
No 249
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.31 E-value=2e-12 Score=141.35 Aligned_cols=60 Identities=20% Similarity=0.439 Sum_probs=55.9
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
..|+++||+++|++ +.+|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.
T Consensus 323 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~ 382 (556)
T PRK11819 323 KVIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIK 382 (556)
T ss_pred eEEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 35999999999964 3699999999999999999999999999999999999999999983
No 250
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.31 E-value=2.2e-12 Score=140.96 Aligned_cols=60 Identities=18% Similarity=0.419 Sum_probs=55.8
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
..|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.
T Consensus 321 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~ 380 (552)
T TIGR03719 321 KVIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIK 380 (552)
T ss_pred eEEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEE
Confidence 35999999999964 3699999999999999999999999999999999999999999983
No 251
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.30 E-value=2.1e-12 Score=115.19 Aligned_cols=47 Identities=38% Similarity=0.682 Sum_probs=44.9
Q ss_pred CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 464 ~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
+.++|+|+||++.+||.+||.||||||||||+|.++-+..|++|+++
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~ 61 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL 61 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEE
Confidence 46899999999999999999999999999999999999999999874
No 252
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.29 E-value=3.1e-12 Score=142.11 Aligned_cols=62 Identities=44% Similarity=0.611 Sum_probs=56.2
Q ss_pred cEEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++|++++|+++. +.++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|+
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~ 66 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYR 66 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE
Confidence 589999999997422 24699999999999999999999999999999999999999999873
No 253
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.29 E-value=2.8e-12 Score=132.01 Aligned_cols=59 Identities=31% Similarity=0.647 Sum_probs=55.9
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.++++|++-+||+ ..+++||||++++||+-||.|++|+|||||+|.|.|+|+|++|+|+
T Consensus 4 ~l~~~~itK~f~~---~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~ 62 (501)
T COG3845 4 ALEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIR 62 (501)
T ss_pred eEEEeccEEEcCC---EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEE
Confidence 5899999999983 5699999999999999999999999999999999999999999984
No 254
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.29 E-value=2.5e-12 Score=125.18 Aligned_cols=59 Identities=29% Similarity=0.567 Sum_probs=55.0
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+.+|++..|++ ..+++|||++|+.||.+|+-||||||||||+++|+|+..|++|.|.
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~ 60 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR 60 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEE
Confidence 4888999999974 4699999999999999999999999999999999999999999984
No 255
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.29 E-value=3.5e-12 Score=119.98 Aligned_cols=59 Identities=31% Similarity=0.587 Sum_probs=55.0
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
-++++||+-.|.. .++|+||||++++||+|+++|++|+||||++|.|+|+.+|.+|+|.
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~ 61 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRII 61 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEE
Confidence 4789999999963 4699999999999999999999999999999999999999999984
No 256
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.28 E-value=3e-12 Score=138.06 Aligned_cols=60 Identities=25% Similarity=0.362 Sum_probs=54.2
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-CCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-~sG~I~ 510 (510)
..|+++||+++|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+.+| ++|+|.
T Consensus 259 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~ 319 (490)
T PRK10938 259 PRIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLT 319 (490)
T ss_pred ceEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEE
Confidence 35999999999964 3599999999999999999999999999999999999876 689873
No 257
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.28 E-value=3.1e-12 Score=138.56 Aligned_cols=57 Identities=18% Similarity=0.391 Sum_probs=53.3
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++|++++|. .+|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~ 321 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIR 321 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEE
Confidence 599999999872 389999999999999999999999999999999999999999983
No 258
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.28 E-value=2.9e-12 Score=139.38 Aligned_cols=61 Identities=31% Similarity=0.500 Sum_probs=54.1
Q ss_pred cEEEEeeeEECCCC--------CCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSR--------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~--------~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|+++ .++.+|+|+||+|++||++||+|+||||||||+|+|+|++ |++|+|.
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~ 343 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIW 343 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEE
Confidence 59999999999631 1246999999999999999999999999999999999999 5899983
No 259
>PRK11098 microcin B17 transporter; Reviewed
Probab=99.25 E-value=1.4e-07 Score=97.79 Aligned_cols=221 Identities=14% Similarity=0.102 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHHHHHhc--CCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---
Q 010471 198 ANIVLVKRLRETLYSALLF--QDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWP--- 272 (510)
Q Consensus 198 ~~~~i~~~lr~~l~~~ll~--lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~--- 272 (510)
..+++..+.|..+-+++++ +.....| .-=+|+..|++...+........++.++++.+..+.++..+|..
T Consensus 161 ~~~~l~irWR~wLT~~yl~~Wl~~r~ie-----nPDQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~ILW~LS~~l~~ 235 (409)
T PRK11098 161 FVSHYVFRWRTAMNEYYMAHWQKLRHIE-----GAAQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLVTLSAHVPE 235 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCC-----CccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 3344455555555444444 2222222 35689999999988877777778888899888888888888865
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHH
Q 010471 273 ----------LTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEK 342 (510)
Q Consensus 273 ----------l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~ 342 (510)
|..++++...+-..+....+++..++.-+.++.+++....++..=++. |+.|.++.++..++
T Consensus 236 ~~i~G~ipg~Lv~~aiiyai~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~LVrvrena--------E~~E~~~L~~~F~~ 307 (409)
T PRK11098 236 LPIVGHIPYGLVIAAIVWSLFGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDA--------DRATPPTVRELFSN 307 (409)
T ss_pred ccccCCCchHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHhHhhhhh--------hHHHHHHHHHHHHH
Confidence 344444444444555566777777777666666666555443322222 34455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 343 LAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATE 422 (510)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 422 (510)
..+...+........+.....-.++..++-..+.+-.+..|+++.|.+........++..++..+.+.+.++.+-.+..+
T Consensus 308 V~~N~~rl~~~~~~l~~f~~~y~~~~~i~P~iv~aP~y~aG~ItlG~l~Q~~~AF~~V~~als~~v~sy~~lael~A~~~ 387 (409)
T PRK11098 308 VRKNYFRLYFHYMYFNIARILYLQVDNVFGLFLLFPSIVAGTITLGLMTQITNVFGQVRGSFQYLINSWTTIVELLSIYK 387 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54443333322222233333333444455555566677899999999999988899999999999999999999999999
Q ss_pred HHHHhhcCC
Q 010471 423 KVFQLIDLL 431 (510)
Q Consensus 423 rl~eil~~~ 431 (510)
|+.++.+.-
T Consensus 388 RL~~F~~~l 396 (409)
T PRK11098 388 RLRSFEAAL 396 (409)
T ss_pred HHHHHHHHH
Confidence 999997653
No 260
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.24 E-value=5.8e-12 Score=135.86 Aligned_cols=57 Identities=23% Similarity=0.440 Sum_probs=53.4
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++| +++|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.
T Consensus 250 ~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 306 (491)
T PRK10982 250 ILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTIT 306 (491)
T ss_pred EEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEE
Confidence 59999999985 2499999999999999999999999999999999999999999983
No 261
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.24 E-value=3.7e-12 Score=115.07 Aligned_cols=48 Identities=35% Similarity=0.634 Sum_probs=45.3
Q ss_pred CCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 463 PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 463 ~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
+...+.+.|||++.+||+.||+|.+|||||||+|.|+|..+|++|+|+
T Consensus 24 ~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il 71 (267)
T COG4167 24 QTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEIL 71 (267)
T ss_pred hhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEE
Confidence 445689999999999999999999999999999999999999999985
No 262
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.23 E-value=9.9e-12 Score=122.67 Aligned_cols=60 Identities=28% Similarity=0.566 Sum_probs=51.7
Q ss_pred EEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCcee
Q 010471 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQV 509 (510)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-----~sG~I 509 (510)
++++|++-+|+... ...+++||||+|++||++||||+|||||||+.+.++|+.++ .+|+|
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i 67 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEI 67 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEE
Confidence 57889999987532 24699999999999999999999999999999999999984 45665
No 263
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.23 E-value=2.1e-11 Score=130.73 Aligned_cols=61 Identities=33% Similarity=0.489 Sum_probs=56.8
Q ss_pred cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
+.-++++||+|+|+++ +.+++|+||+|++|+++|||||+|+|||||+|+|+|-..|.+|+|
T Consensus 319 ~~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v 379 (530)
T COG0488 319 KLVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379 (530)
T ss_pred CeeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceE
Confidence 3469999999999753 679999999999999999999999999999999999999999987
No 264
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.23 E-value=9.3e-12 Score=128.84 Aligned_cols=54 Identities=33% Similarity=0.390 Sum_probs=48.3
Q ss_pred eeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 454 nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
++..+|.. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+
T Consensus 29 ~~~~~~g~---~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~ 82 (382)
T TIGR03415 29 EILDETGL---VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVL 82 (382)
T ss_pred HHHHhhCC---EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE
Confidence 45566642 4689999999999999999999999999999999999999999984
No 265
>PLN03073 ABC transporter F family; Provisional
Probab=99.23 E-value=1e-11 Score=138.65 Aligned_cols=59 Identities=20% Similarity=0.354 Sum_probs=53.5
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc---CCCCcee
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY---EPSDGQV 509 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y---~p~sG~I 509 (510)
..|+++||+|+|++ .++|+|+||+|++|+++||||+||||||||+++|+|.. .|++|+|
T Consensus 176 ~~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I 237 (718)
T PLN03073 176 KDIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQI 237 (718)
T ss_pred eeEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEE
Confidence 46999999999964 35999999999999999999999999999999999864 5788887
No 266
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=99.22 E-value=1.6e-11 Score=125.53 Aligned_cols=83 Identities=19% Similarity=0.247 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccc-----------cceEEeeCCCEEEEE
Q 010471 416 QSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILN-----------HVCLTIEANEVVAIV 484 (510)
Q Consensus 416 ~~~~a~~rl~eil~~~~e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~-----------nisltI~~Ge~vAIV 484 (510)
+...+.+|++++++.++... ..+....+.|+|+||+|.||++ +.+|+ |+++.|.+||+++||
T Consensus 102 R~~~~~ER~~~Ll~v~~vn~-----~~~e~~~~ri~Fe~LTf~YP~e--r~~Le~~~~~~~~R~id~~~pig~Gq~~~Iv 174 (415)
T TIGR00767 102 RSPKEGERYFALLKVESVNG-----DDPEKAKNRVLFENLTPLYPNE--RLRLETSTEDLSTRVLDLFAPIGKGQRGLIV 174 (415)
T ss_pred eccccHhHHHHHhCCCccCC-----CCccccCCCeEEEEeeecCCCc--cceeecCccccceeeeeeEEEeCCCCEEEEE
Confidence 34457899999999876532 1122345789999999999964 47997 999999999999999
Q ss_pred cCCCCcHHHHHHHHhcccCCC
Q 010471 485 GLSGSGKSTFVNLLLRLYEPS 505 (510)
Q Consensus 485 G~SGSGKSTL~kLL~g~y~p~ 505 (510)
|++|||||||++++.+.+...
T Consensus 175 G~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 175 APPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCCCChhHHHHHHHHhhccc
Confidence 999999999999999987644
No 267
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.22 E-value=1.3e-11 Score=130.34 Aligned_cols=61 Identities=33% Similarity=0.562 Sum_probs=54.7
Q ss_pred cEEEEeeeEECCCCCC-CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC----Ccee
Q 010471 449 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS----DGQV 509 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~-~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~----sG~I 509 (510)
-++++|++-.|.+..+ ..+++||||+|.+||++||||+|||||||+++.|+|+.++. +|+|
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I 70 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEV 70 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEE
Confidence 5899999999875422 25999999999999999999999999999999999999988 7887
No 268
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.22 E-value=4.6e-10 Score=135.44 Aligned_cols=62 Identities=18% Similarity=0.450 Sum_probs=56.9
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
..|+++||+++|+++ ++.+|+|+||+|++||++||+|+||||||||+|+|+|+.+|++|+|.
T Consensus 1936 ~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~ 1997 (2272)
T TIGR01257 1936 DILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDAT 1997 (2272)
T ss_pred ceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEE
Confidence 469999999999642 25699999999999999999999999999999999999999999984
No 269
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.21 E-value=1.4e-11 Score=132.11 Aligned_cols=59 Identities=36% Similarity=0.657 Sum_probs=55.6
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++|++++|++ +++|+|+|+++.+|++++|||++|||||||+|+|+|..+|++|+|.
T Consensus 3 ~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~ 61 (530)
T COG0488 3 MITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61 (530)
T ss_pred eEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEe
Confidence 5899999999954 5799999999999999999999999999999999999999999983
No 270
>PRK12369 putative transporter; Reviewed
Probab=99.20 E-value=5.6e-07 Score=91.44 Aligned_cols=192 Identities=15% Similarity=0.077 Sum_probs=123.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 232 SRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPL------------TLSALLICSFLSIIVSVYGQYQKRAS 299 (510)
Q Consensus 232 srl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l------------~li~li~~~l~~~~~~~~~~~~~~~~ 299 (510)
+|++.|++...+........++.++++++....++..+|..+ .+.+++...+..++....++...++.
T Consensus 118 QRI~EDi~~f~~~tl~l~~~~i~s~~~l~sF~~iLW~lS~~l~~~~~g~ipg~lv~~aiiyai~gt~it~~iGr~L~~ln 197 (326)
T PRK12369 118 QRIQEDTYRFAKIMESLGLSFLRAIMTLIAFIPILWGLSDGVSLPFLKDIPGSLVWIALLISLGGLVISWFVGIKLPGLE 197 (326)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeeecCCCcchHHHHHHHHHHHHHHHHHHHcCcCchhh
Confidence 899999999888777777888888998888888888877433 33334444444455556677666666
Q ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 300 VLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMS 379 (510)
Q Consensus 300 ~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~l 379 (510)
.+.+..+++..-.+...=++.+. + .|.++.++..++..+...+.....-..+.......+...++-..+.+-.
T Consensus 198 ~~qq~~EAdFR~~Lvrvre~ae~---~----~E~~~l~~~f~~v~~n~~~~~~~~~~l~~~~~~y~~~~~i~p~li~aP~ 270 (326)
T PRK12369 198 YNNQKVEAAFRKELVYAEDDKKN---Y----AKPETLIELFTGLRFNYFRLFLHYGYFNIWLISFSQMMVIVPYLIMAPG 270 (326)
T ss_pred HHHHHHHHHHHHHHHhhccchhh---h----hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555544333221111110 1 2234444444444433222222222222333333344444445555667
Q ss_pred HhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 010471 380 IMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL 430 (510)
Q Consensus 380 v~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~ 430 (510)
...|+++.|.+........++.+++..+.+.+.++.+-.+..+|+.++.+.
T Consensus 271 y~sg~i~lG~l~Q~~~AF~~v~~als~~v~~y~~la~~~A~~~RL~~f~~~ 321 (326)
T PRK12369 271 LFAGVITLGVLMQISNAFSQVRSSFSVFIRNWTTITELRSIYKRLKEFEKN 321 (326)
T ss_pred HHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999988888999999999999999999999999999998754
No 271
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.19 E-value=1.3e-11 Score=110.61 Aligned_cols=58 Identities=29% Similarity=0.398 Sum_probs=53.5
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
-++++++|-.|.++ .--+|+||++.|||+.||||+||||||||+++|.+=..|++|+|
T Consensus 6 LL~V~~lsk~Yg~~---~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v 63 (258)
T COG4107 6 LLSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTV 63 (258)
T ss_pred ceeehhhhhhhCCC---cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeE
Confidence 47788999999754 46899999999999999999999999999999999999999987
No 272
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=99.19 E-value=2.1e-07 Score=93.05 Aligned_cols=200 Identities=15% Similarity=0.078 Sum_probs=140.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccC----chhHHHHHHhhH
Q 010471 163 QREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEA----VGGLTSRLTADC 238 (510)
Q Consensus 163 ~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~----~G~lisrl~~D~ 238 (510)
.+.|...+........++++..+++.....++......+.-..|-..+.++.++-. .||.-.. ...-=+|+++|+
T Consensus 58 ~~~d~~~f~~~l~~~~~l~~~~~~l~~~~~yl~~~L~l~wR~~Lt~~~~~~yl~~~-~yY~l~~~~~~idNpDQRIteDi 136 (281)
T PF06472_consen 58 QQKDLQAFWRLLLLFLLLAIASALLNSILKYLRQRLALRWREWLTRHLHDRYLSNR-TYYRLNNLDGRIDNPDQRITEDI 136 (281)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hhHhhhccccccccHhhHHHHHH
Confidence 34454455444444444444445555555554444444444555555555555555 6666443 335678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010471 239 QRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTL-SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETL 317 (510)
Q Consensus 239 ~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~l-i~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l 317 (510)
+...+........++..++.++.....+...+..+.. ++++...+...+....++...++..+.++.+++.........
T Consensus 137 ~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r 216 (281)
T PF06472_consen 137 RKFTESSLSLFLGLLKPILDLISFSVILWSISGWLGPWAALIYAILGTLITHWIGPPLGRLNAEQQRLEADFRYALVRLR 216 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHH
Confidence 9999988888888888888888888888877777766 445555556667788888888888888888888888889999
Q ss_pred chHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 318 CMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFIT 363 (510)
Q Consensus 318 ~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (510)
++.+.|-.++.|+.|.++.++.+++..+...+.............+
T Consensus 217 ~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~ 262 (281)
T PF06472_consen 217 ENAESIAFYRGESRERRRLDRRFDALIDNWRRLIRRRLRLGFFTNF 262 (281)
T ss_pred HhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999877666654444444433333
No 273
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.18 E-value=1.2e-11 Score=113.51 Aligned_cols=59 Identities=25% Similarity=0.542 Sum_probs=54.8
Q ss_pred EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
++..+++-+|++ -..+++|+||+++.||+++|-|++|+||||+++.|+.|..|++|.|+
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~ 60 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT 60 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEE
Confidence 678999999975 35699999999999999999999999999999999999999999974
No 274
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.17 E-value=2.8e-11 Score=144.19 Aligned_cols=62 Identities=24% Similarity=0.374 Sum_probs=55.2
Q ss_pred cEEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC---CCCceeC
Q 010471 449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~---p~sG~I~ 510 (510)
.++++||+++|+.++ ++.+|+|+|++|++||++||+||||||||||+++|+|+.+ |++|+|+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~ 824 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRL 824 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEE
Confidence 479999999996322 3579999999999999999999999999999999999998 7889984
No 275
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.16 E-value=2.3e-11 Score=114.86 Aligned_cols=59 Identities=19% Similarity=0.529 Sum_probs=55.1
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.+++++|+-+|.+ ..|++|+||++|+||..+++|++|+||||..++|+||.+|++|+|.
T Consensus 2 ~L~ie~vtK~Fg~---k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~ 60 (300)
T COG4152 2 ALEIEGVTKSFGD---KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEIT 60 (300)
T ss_pred ceEEecchhccCc---eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEE
Confidence 4789999999953 5699999999999999999999999999999999999999999984
No 276
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.16 E-value=2.2e-11 Score=116.79 Aligned_cols=46 Identities=30% Similarity=0.582 Sum_probs=44.0
Q ss_pred CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.++.+||||+||+|+.++++|++|+||||.+|+|.|+..|++|.|+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~ 82 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR 82 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEE
Confidence 4689999999999999999999999999999999999999999974
No 277
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.15 E-value=2.6e-11 Score=108.48 Aligned_cols=62 Identities=35% Similarity=0.588 Sum_probs=52.0
Q ss_pred cEEEEeeeEECC----CCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYP----SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~----~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.+..+||+-++- ++-.-|||+|+||++++||++.+=||||||||||++.|-+-|.|++|+|.
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~ 69 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQIL 69 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEE
Confidence 356677764442 22234799999999999999999999999999999999999999999984
No 278
>PRK13409 putative ATPase RIL; Provisional
Probab=99.15 E-value=3.2e-11 Score=132.16 Aligned_cols=58 Identities=31% Similarity=0.447 Sum_probs=53.9
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
-++++|++++|++ ..|+++|++|++||++||+|+||||||||+++|+|+.+|++|+|.
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~ 397 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVD 397 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 5999999999953 259999999999999999999999999999999999999999983
No 279
>PLN03211 ABC transporter G-25; Provisional
Probab=99.15 E-value=5e-11 Score=132.23 Aligned_cols=46 Identities=37% Similarity=0.483 Sum_probs=43.3
Q ss_pred CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC--CceeC
Q 010471 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS--DGQVC 510 (510)
Q Consensus 465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~--sG~I~ 510 (510)
+++|+|+|+++++||++||+||||||||||+++|+|+.+|+ +|+|.
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~ 128 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTIL 128 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEE
Confidence 56999999999999999999999999999999999999986 89873
No 280
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.15 E-value=3.2e-11 Score=130.43 Aligned_cols=55 Identities=24% Similarity=0.457 Sum_probs=50.9
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.++++|+++. .+++|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~ 311 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVY 311 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEE
Confidence 5899999832 389999999999999999999999999999999999999999984
No 281
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.14 E-value=3.6e-11 Score=129.99 Aligned_cols=54 Identities=26% Similarity=0.495 Sum_probs=50.4
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
-|+++||++ ++|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~ 310 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVT 310 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 589999983 379999999999999999999999999999999999999999984
No 282
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.13 E-value=5.9e-11 Score=142.99 Aligned_cols=62 Identities=26% Similarity=0.435 Sum_probs=56.9
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
..|+++||+++|+++ ++.+|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~ 988 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVL 988 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEE
Confidence 469999999999632 35799999999999999999999999999999999999999999973
No 283
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=7.2e-11 Score=110.85 Aligned_cols=60 Identities=32% Similarity=0.521 Sum_probs=53.8
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc--cCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~--y~p~sG~I~ 510 (510)
..+++|++.+-.+. +++|+++||+|++||+-||.||+|||||||++.|+|. |++++|+|+
T Consensus 3 ~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~ 64 (251)
T COG0396 3 MLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEIL 64 (251)
T ss_pred eeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEE
Confidence 46888999887542 4799999999999999999999999999999999997 689999984
No 284
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=8.2e-11 Score=107.16 Aligned_cols=56 Identities=29% Similarity=0.512 Sum_probs=49.0
Q ss_pred EEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 452 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 452 f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
-+|++..- .++.++.|+||++.+||.+-|+||+|||||||+++|+|+.+|++|+|+
T Consensus 5 a~~L~~~R---~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~ 60 (209)
T COG4133 5 AENLSCER---GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVY 60 (209)
T ss_pred hhhhhhcc---CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEE
Confidence 34555443 345799999999999999999999999999999999999999999984
No 285
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.09 E-value=5.7e-11 Score=123.25 Aligned_cols=60 Identities=33% Similarity=0.558 Sum_probs=56.3
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
-|.++||+|+|++++ -++++++|-|..++++|+|||+|+|||||+||+.|...|+.|.|.
T Consensus 389 vi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs 448 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVS 448 (614)
T ss_pred eEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccc
Confidence 599999999998653 699999999999999999999999999999999999999999874
No 286
>PRK13409 putative ATPase RIL; Provisional
Probab=99.08 E-value=7.7e-11 Score=129.16 Aligned_cols=53 Identities=25% Similarity=0.243 Sum_probs=48.9
Q ss_pred eeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 454 nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
+++.+|.+ +..+|+|++ ++++||++||||+||||||||+|+|+|+++|++|+|
T Consensus 78 ~~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i 130 (590)
T PRK13409 78 EPVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDY 130 (590)
T ss_pred CceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccc
Confidence 48999963 246999999 999999999999999999999999999999999997
No 287
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.07 E-value=1.3e-10 Score=126.01 Aligned_cols=54 Identities=17% Similarity=0.407 Sum_probs=50.1
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++|++. .+|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~ 321 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIM 321 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEE
Confidence 599999983 169999999999999999999999999999999999999999983
No 288
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.05 E-value=2.2e-10 Score=100.56 Aligned_cols=54 Identities=30% Similarity=0.503 Sum_probs=49.6
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~ 505 (510)
..+++||+.+-|++ -.|.|+|+||.+||++-|.||||||||||+.-+.|+.+++
T Consensus 2 ~l~l~nvsl~l~g~---cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~ 55 (213)
T COG4136 2 MLCLKNVSLRLPGS---CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQ 55 (213)
T ss_pred ceeeeeeeecCCCc---eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccC
Confidence 46889999998764 5899999999999999999999999999999999999875
No 289
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.03 E-value=1.2e-10 Score=105.02 Aligned_cols=59 Identities=34% Similarity=0.538 Sum_probs=55.0
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.++.+|+.-+|.+ ..|||+||++.++|++++|+|.|||||||+++++-=+-.|++|+|+
T Consensus 6 ~l~v~dlHK~~G~---~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~ 64 (256)
T COG4598 6 ALEVEDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIR 64 (256)
T ss_pred ceehhHHHhhccc---chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEE
Confidence 6888999999964 4699999999999999999999999999999999999999999984
No 290
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.03 E-value=1.8e-10 Score=96.99 Aligned_cols=35 Identities=29% Similarity=0.310 Sum_probs=33.4
Q ss_pred CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 499 (510)
Q Consensus 465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~ 499 (510)
.++|+++||++++||.++|+||||||||||++++.
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 46999999999999999999999999999999986
No 291
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.02 E-value=2e-10 Score=127.15 Aligned_cols=63 Identities=22% Similarity=0.267 Sum_probs=53.7
Q ss_pred cccEEEEeeeEECCCCC------CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC---CceeC
Q 010471 447 MGHVQFVNISFHYPSRP------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQVC 510 (510)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~------~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~---sG~I~ 510 (510)
..+++|.++. +++... ++++|+|+|++|++||.+||+||||||||||+++|+|..+|. +|+|.
T Consensus 15 ~~~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~ 86 (617)
T TIGR00955 15 AQDGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVL 86 (617)
T ss_pred cccchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEE
Confidence 3468888888 765332 467999999999999999999999999999999999999885 78873
No 292
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.02 E-value=3.8e-11 Score=110.26 Aligned_cols=60 Identities=25% Similarity=0.520 Sum_probs=55.6
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
+.+..+|+.-+|.+ ++|.+|+||++++||.|++-||+|+||||+..++.||.+|++|+|.
T Consensus 3 ~~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ 62 (243)
T COG1137 3 STLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKIL 62 (243)
T ss_pred cEEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEE
Confidence 45788999999964 4799999999999999999999999999999999999999999984
No 293
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.01 E-value=5e-10 Score=112.64 Aligned_cols=62 Identities=27% Similarity=0.473 Sum_probs=54.2
Q ss_pred ccEEEEeeeEECCCC--------CCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 448 GHVQFVNISFHYPSR--------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~--------~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
--++-+||...||-+ +...+.+|+||++++||+++|||+|||||||+-..|+|+.+++ |+|+
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~ 344 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIR 344 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEE
Confidence 358889999998832 2234799999999999999999999999999999999999988 9984
No 294
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.00 E-value=2.6e-10 Score=111.53 Aligned_cols=43 Identities=51% Similarity=0.828 Sum_probs=41.8
Q ss_pred cccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 468 L~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
++|+||+|+.||..-|.|-||||||||++++-|+++|++|+|+
T Consensus 44 v~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~il 86 (386)
T COG4175 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEIL 86 (386)
T ss_pred eccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEE
Confidence 7899999999999999999999999999999999999999985
No 295
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.99 E-value=1e-11 Score=137.24 Aligned_cols=169 Identities=14% Similarity=0.133 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 301 LTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRY-----KIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLL 375 (510)
Q Consensus 301 ~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~ 375 (510)
..+...+..++.+.|.+.++.+||..+.|+.....| .....++.+...+..........+...+.....++++|+
T Consensus 34 ~~~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~i~~~~~~~il~i 113 (644)
T PRK10733 34 YSTFLQEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFISWFPMLLLI 113 (644)
T ss_pred HHHHHHHHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHHHHHHHHHHHHHH
Confidence 334445567788889999999999999988766566 455555555444433222222233334444556778899
Q ss_pred HHHHHhcCccCHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccCCCccccEEE
Q 010471 376 GGMSIMIGQVSPE---QLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQF 452 (510)
Q Consensus 376 g~~lv~~g~is~G---~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~~~~~~~~I~f 452 (510)
|+++++.|+++.| .+++|..+...+..+ ..+...+..+.....+.+|+.++.+...++. ..
T Consensus 114 g~~~v~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~------~~--------- 177 (644)
T PRK10733 114 GVWIFFMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVEYLREPS------RF--------- 177 (644)
T ss_pred HHHHHHHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHHHhhCHH------HH---------
Confidence 9999999999998 777777666666655 4555566666666677788888776532210 00
Q ss_pred EeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 453 ~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
+++...+|+| +.|+||+||||||+++.+++-..
T Consensus 178 ----------------~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 178 ----------------QKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred ----------------HhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHcC
Confidence 0111255666 99999999999999999998654
No 296
>PLN03140 ABC transporter G family member; Provisional
Probab=98.95 E-value=1.1e-09 Score=130.65 Aligned_cols=62 Identities=19% Similarity=0.394 Sum_probs=54.0
Q ss_pred cEEEEeeeEECCCC----------CCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC--CCceeC
Q 010471 449 HVQFVNISFHYPSR----------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~----------~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p--~sG~I~ 510 (510)
.++|+||++..+.. ++..+|+|+|+++++||.+||+||||||||||+++|+|..++ .+|+|.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~ 940 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIR 940 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEE
Confidence 69999999998531 224699999999999999999999999999999999999873 688873
No 297
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.91 E-value=5.7e-10 Score=102.16 Aligned_cols=59 Identities=20% Similarity=0.490 Sum_probs=54.6
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
-++.+|||.++++ -.+|+|+||+|.+||.=+|+||+|+||||+++.+.|--+|++|+++
T Consensus 5 iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~ 63 (249)
T COG4674 5 ILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVL 63 (249)
T ss_pred eEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEE
Confidence 4788999999965 4699999999999999999999999999999999999999999873
No 298
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.90 E-value=1.7e-09 Score=99.69 Aligned_cols=61 Identities=25% Similarity=0.370 Sum_probs=54.2
Q ss_pred cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
+..|+++++.|+|+.. .|++-|+|+++|+|..+.+||.+|||||||+|+|.|-.-...|.|
T Consensus 11 ~~aievsgl~f~y~~~--dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v 71 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVS--DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVV 71 (291)
T ss_pred cceEEEeccEEecccC--CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeE
Confidence 4679999999999865 389999999999999999999999999999999999766555544
No 299
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.90 E-value=1.1e-09 Score=110.52 Aligned_cols=66 Identities=35% Similarity=0.667 Sum_probs=55.1
Q ss_pred CCccccEEEEeeeEECCCC-----------------------CCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471 444 QRLMGHVQFVNISFHYPSR-----------------------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 500 (510)
Q Consensus 444 ~~~~~~I~f~nVsF~Y~~~-----------------------~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g 500 (510)
+++++.|.|+|++-.|.+. -...+|+|+||+|+||+.+||||+|||||||++++++|
T Consensus 352 e~L~~p~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G 431 (593)
T COG2401 352 EKLEGPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILG 431 (593)
T ss_pred cccCCccccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHH
Confidence 3456789999988776531 12357999999999999999999999999999999998
Q ss_pred c--------cCCCCcee
Q 010471 501 L--------YEPSDGQV 509 (510)
Q Consensus 501 ~--------y~p~sG~I 509 (510)
+ |+|++|.|
T Consensus 432 ~~~~~~ee~y~p~sg~v 448 (593)
T COG2401 432 AQKGRGEEKYRPDSGKV 448 (593)
T ss_pred HhhcccccccCCCCCce
Confidence 6 78999976
No 300
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.88 E-value=1.8e-09 Score=95.93 Aligned_cols=58 Identities=28% Similarity=0.454 Sum_probs=53.6
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
.|+++|++|.|.. .++|-||+|+-+.||++.+.||||+|||||++.|-=+--|.+|+.
T Consensus 2 sirv~~in~~yg~---~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l 59 (242)
T COG4161 2 SIQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59 (242)
T ss_pred ceEEccccccccc---chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeE
Confidence 5899999999964 369999999999999999999999999999999999999999974
No 301
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=98.87 E-value=7.6e-06 Score=77.80 Aligned_cols=170 Identities=12% Similarity=0.114 Sum_probs=118.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 126 LIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKR 205 (510)
Q Consensus 126 ~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~i~~~ 205 (510)
..|+|++.+...+.+.+...++.+..|.+.+..+++..+++... ......+.+...+....|...-..+-.|+-.+
T Consensus 4 I~r~~~~kl~~T~~Lv~aEn~l~l~yPl~~G~AIn~ll~g~~~~----~~~~~~~~l~~~~igaaRR~~DTRvf~rIy~~ 79 (237)
T PF13748_consen 4 IARRHRKKLALTFLLVLAENVLLLLYPLFIGFAINALLNGDVWQ----ALMYAALVLLMWAIGAARRIYDTRVFSRIYAE 79 (237)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH----HHHHHHHHHHHHHHhhhhHHHhhHHHHHHHHH
Confidence 45789999999999999999999999999998887654444211 11222333334444455544444333344333
Q ss_pred HHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 010471 206 LRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLS 285 (510)
Q Consensus 206 lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li~~~l~~ 285 (510)
+-..+..+-. -+..+.+.+..|++ =..++-+++...+|.++.+++..++..++++.++.++++.++....++.
T Consensus 80 la~~vi~~qr------~~~~~~S~i~ARv~-lsRE~VdFfE~~lP~lits~vsivga~vmLl~~e~~~g~~~l~~l~~~~ 152 (237)
T PF13748_consen 80 LAVPVILSQR------QQGLSVSTIAARVA-LSREFVDFFEQHLPTLITSVVSIVGAAVMLLVFEFWLGLACLLILALFL 152 (237)
T ss_pred HhHHHHHHHH------HhCCChhHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322211 45567899999996 5677888999999999999999999999999999999999888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010471 286 IIVSVYGQYQKRASVLTQECN 306 (510)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~ 306 (510)
++...|.++..++..+..+..
T Consensus 153 ~i~~~f~~~~~~L~~~LNnrl 173 (237)
T PF13748_consen 153 LILPRFARRNYRLYRRLNNRL 173 (237)
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 776666666666655444443
No 302
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=1.9e-09 Score=109.10 Aligned_cols=60 Identities=32% Similarity=0.671 Sum_probs=55.7
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
-+-+.||+|.||+. .+.+++++|-|.--..||||||+|-|||||++||.|-.+|+.|+.+
T Consensus 586 vLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~R 645 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELR 645 (807)
T ss_pred eeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhh
Confidence 46788999999975 5899999999999999999999999999999999999999999853
No 303
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.87 E-value=1.3e-09 Score=113.59 Aligned_cols=42 Identities=24% Similarity=0.340 Sum_probs=39.1
Q ss_pred CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc-ee
Q 010471 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QV 509 (510)
Q Consensus 466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG-~I 509 (510)
.||+|||+++++||.++|+||||||||||++ .|+-+|++| +|
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I 62 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEF 62 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEE
Confidence 5899999999999999999999999999999 788888888 56
No 304
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.81 E-value=3.1e-09 Score=98.90 Aligned_cols=47 Identities=32% Similarity=0.557 Sum_probs=44.9
Q ss_pred CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 464 ~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
++++|+++|++|+.|+.|-++|.+|+|||||++.++|-..|++|+|+
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~ 64 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQIL 64 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEE
Confidence 45799999999999999999999999999999999999999999984
No 305
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.75 E-value=1.3e-08 Score=111.92 Aligned_cols=64 Identities=31% Similarity=0.426 Sum_probs=56.6
Q ss_pred cccEEEEeeeEECCCCC--CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC---CCceeC
Q 010471 447 MGHVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP---SDGQVC 510 (510)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~--~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p---~sG~I~ 510 (510)
..++.|+|++..-++.+ .+.+|+|||.+++|||.+||.||||||||||++.|+|--+. .+|+|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~il 91 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEIL 91 (613)
T ss_pred cceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEE
Confidence 34799999999997652 46799999999999999999999999999999999999975 788874
No 306
>PLN03140 ABC transporter G family member; Provisional
Probab=98.72 E-value=7.9e-09 Score=123.42 Aligned_cols=47 Identities=26% Similarity=0.444 Sum_probs=44.1
Q ss_pred CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC---CceeC
Q 010471 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQVC 510 (510)
Q Consensus 464 ~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~---sG~I~ 510 (510)
+..+|+|+|++|+|||.++|+||||||||||+|+|+|..+|+ +|+|.
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~ 226 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEIT 226 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEE
Confidence 345999999999999999999999999999999999999998 99883
No 307
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.68 E-value=1.3e-08 Score=121.59 Aligned_cols=46 Identities=24% Similarity=0.314 Sum_probs=42.7
Q ss_pred CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc----CCCCceeC
Q 010471 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY----EPSDGQVC 510 (510)
Q Consensus 465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y----~p~sG~I~ 510 (510)
+++|+|+|+++++||.+||+||||||||||+|+|+|.. .|.+|+|.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~ 123 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVIT 123 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEE
Confidence 45999999999999999999999999999999999986 57999984
No 308
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.68 E-value=1.8e-08 Score=101.56 Aligned_cols=56 Identities=34% Similarity=0.439 Sum_probs=46.0
Q ss_pred cEEEEeeeEECCC-CCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471 449 HVQFVNISFHYPS-RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (510)
Q Consensus 449 ~I~f~nVsF~Y~~-~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p 504 (510)
-+..+|++..|.. +...+++|||||+|.+||++||||+||||||--++-++|+.+-
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~ 62 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPS 62 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCC
Confidence 3566776655531 1246799999999999999999999999999999999999864
No 309
>PRK15494 era GTPase Era; Provisional
Probab=98.45 E-value=1.5e-07 Score=96.65 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=50.5
Q ss_pred CCccccEEEEeeeEECCCCCCCCccccceEEeeCCC-------EEEEEcCCCCcHHHHHHHHhcc
Q 010471 444 QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE-------VVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 444 ~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge-------~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
+...|+++++||+|+||. ..++++++++++++|+ +++|||++|+|||||++-|.|-
T Consensus 13 ~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~ 75 (339)
T PRK15494 13 EEFKGDTEALAAAVREDA--STGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE 75 (339)
T ss_pred hhhCCccccccccccCCC--CcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence 446789999999999993 3679999999999999 9999999999999999988774
No 310
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.44 E-value=2.3e-07 Score=97.15 Aligned_cols=59 Identities=19% Similarity=0.211 Sum_probs=53.9
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
+.++.++++-.|... ..+++.++ +|.+||+++|+|+||||||||++.|+|+.+|+.|.|
T Consensus 138 ~~~~r~~v~~~l~TG--i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv 196 (450)
T PRK06002 138 PAMTRARVETGLRTG--VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVI 196 (450)
T ss_pred CCeEeecceEEcCCC--cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeee
Confidence 578999999999743 67999996 999999999999999999999999999999999876
No 311
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.36 E-value=6.3e-07 Score=93.70 Aligned_cols=58 Identities=24% Similarity=0.437 Sum_probs=52.1
Q ss_pred ccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC
Q 010471 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506 (510)
Q Consensus 446 ~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s 506 (510)
...+|.++|++++|++ .++++|.+|++.+|++++|+|++||||||+++.+.|=..|..
T Consensus 72 ~s~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p 129 (614)
T KOG0927|consen 72 ISRDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIP 129 (614)
T ss_pred ccccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCC
Confidence 4468999999999975 579999999999999999999999999999999998776654
No 312
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=98.36 E-value=0.0038 Score=62.10 Aligned_cols=228 Identities=11% Similarity=0.050 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 186 IFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFIN 265 (510)
Q Consensus 186 ~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~ 265 (510)
++..+......+...|.-..|-..+.++--+. ++.=.-.+|+..|+.+....+......++.++++.+..+-+
T Consensus 71 ~~~v~~~ff~shyiFrWR~Am~~yY~~~W~~~-------r~IEGASQRIQEDtmrfa~i~E~Lgv~~i~simtliaFlPi 143 (315)
T PF05992_consen 71 VLAVLNSFFVSHYIFRWRTAMNEYYMSHWPKL-------RHIEGASQRIQEDTMRFAKIMEDLGVSFIRSIMTLIAFLPI 143 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-------ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444555544443 33434578999999999988888888888899888888777
Q ss_pred HHHHhHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHH
Q 010471 266 LLTLSWPLT-------------LSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKE 332 (510)
Q Consensus 266 l~~~s~~l~-------------li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~ 332 (510)
++.+|-.+. ..+++...+..++..+.+.+...+.-..|+..+...+. .+-|=.. ......+..
T Consensus 144 L~~lS~~V~~lp~~g~i~~~Lv~~ai~~s~~gt~~l~~vGikLPgLe~~nQkvEAAyRKe---LV~gED~-~~ra~~~tl 219 (315)
T PF05992_consen 144 LWELSSHVSELPFFGEIPHSLVWAAIIWSLFGTILLAFVGIKLPGLEFNNQKVEAAYRKE---LVYGEDD-ANRAQPPTL 219 (315)
T ss_pred HHHHhccCCcCcccCCCchHHHHHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHHHH---HHhcCcc-cccCCchhH
Confidence 776653322 22233333333334445555544444444444433332 1111111 112233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 333 LGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLS 412 (510)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~ 412 (510)
.+.|.+..+.+.+..... .-++.....-.++..++...+-+-.+..|.+|.|.+........++..++..+.+.++
T Consensus 220 ~eLF~~Vr~Ny~rly~hy----~yfni~~~~y~q~~~i~~~i~l~Psi~ag~iTLG~~~Qi~~aF~~V~~sfq~lv~~W~ 295 (315)
T PF05992_consen 220 RELFSNVRRNYFRLYFHY----MYFNIARISYLQFDVIFPYIILIPSIVAGAITLGVLQQISNAFGQVRSSFQYLVNSWT 295 (315)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444433333 2233333333344444444445556778999999999999889999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 010471 413 SLLQSIGATEKVFQLI 428 (510)
Q Consensus 413 ~~~~~~~a~~rl~eil 428 (510)
.+.+-+...+|+.++-
T Consensus 296 tivEL~Si~kRL~~FE 311 (315)
T PF05992_consen 296 TIVELRSIYKRLRAFE 311 (315)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999874
No 313
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.30 E-value=6e-07 Score=86.07 Aligned_cols=54 Identities=20% Similarity=0.457 Sum_probs=38.9
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHh-cccCCCCce
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLYEPSDGQ 508 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~-g~y~p~sG~ 508 (510)
.|+++|.. +|.++. .++ ++ ...+|++++|+|+||||||||+++|. .+|.+..+.
T Consensus 5 ~i~l~nf~-~y~~~~---~i~-~~-~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~ 59 (213)
T cd03279 5 KLELKNFG-PFREEQ---VID-FT-GLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRY 59 (213)
T ss_pred EEEEECCc-CcCCce---EEe-CC-CCCccCEEEEECCCCCCHHHHHHHheeeEecCcccc
Confidence 68999999 875321 000 00 01258999999999999999999999 577666554
No 314
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=98.22 E-value=1.3e-06 Score=100.55 Aligned_cols=61 Identities=20% Similarity=0.404 Sum_probs=56.2
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
..+..+|++..|+.+. .+.+++|+.+++||+.++-|++||||||++|+|.|...|++|++.
T Consensus 563 ~~~~~~~L~k~y~~~~--~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~ 623 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKD--GAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEAL 623 (885)
T ss_pred ceEEEcceeeeecchh--hhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEE
Confidence 4689999999998653 299999999999999999999999999999999999999999973
No 315
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.21 E-value=1.1e-06 Score=92.65 Aligned_cols=44 Identities=27% Similarity=0.383 Sum_probs=42.1
Q ss_pred CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
..+++++ +++++||+++|+|+||+|||||+++|+|+++|+.|.|
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI 189 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVI 189 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEE
Confidence 5689999 9999999999999999999999999999999999976
No 316
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.19 E-value=1.1e-06 Score=92.10 Aligned_cols=43 Identities=28% Similarity=0.380 Sum_probs=39.8
Q ss_pred CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507 (510)
Q Consensus 464 ~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG 507 (510)
+..+++++ ++|.+||+++|+|+||||||||+++|+|+++|+.+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~ 184 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVV 184 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeE
Confidence 35689999 99999999999999999999999999999998854
No 317
>PRK08149 ATP synthase SpaL; Validated
Probab=98.13 E-value=2e-06 Score=89.99 Aligned_cols=41 Identities=24% Similarity=0.425 Sum_probs=39.0
Q ss_pred CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC
Q 010471 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506 (510)
Q Consensus 465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s 506 (510)
..+++++ +++.+||+++|+|+||||||||++.|+|.++++.
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv 179 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADV 179 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCe
Confidence 4689999 9999999999999999999999999999999886
No 318
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.12 E-value=3.5e-06 Score=63.64 Aligned_cols=33 Identities=27% Similarity=0.490 Sum_probs=26.0
Q ss_pred cceEEeeC-CCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 470 HVCLTIEA-NEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 470 nisltI~~-Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
+-++++.+ |+.+.|.|+||||||||++.+.=..
T Consensus 14 ~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 14 GETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred CeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34566765 5799999999999999998775433
No 319
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.08 E-value=3.1e-06 Score=85.71 Aligned_cols=45 Identities=24% Similarity=0.343 Sum_probs=41.8
Q ss_pred CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 464 ~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
+..+++++ +++.+||+++|+|+||+|||||++.|+|..+|+.|.+
T Consensus 56 Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi 100 (326)
T cd01136 56 GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVI 100 (326)
T ss_pred CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEE
Confidence 35699999 9999999999999999999999999999999988764
No 320
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=4.3e-06 Score=87.08 Aligned_cols=51 Identities=25% Similarity=0.402 Sum_probs=47.1
Q ss_pred cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 500 (510)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g 500 (510)
..+|+.+|.+.+|.+ +.+|.+-++++..|...++||++|+|||||++.|..
T Consensus 78 ~~Di~~~~fdLa~G~---k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG---KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred ccceeeeeeeeeecc---hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 358999999999964 469999999999999999999999999999999987
No 321
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.01 E-value=3.7e-06 Score=88.11 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=52.3
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
..++.++++-.+.. +..+++++ ++|.+||+++|+|+||+|||||++.|+|..+|+.|.|
T Consensus 128 ~~~~r~~v~~~l~t--Gi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi 186 (433)
T PRK07594 128 PAMVRQPITQPLMT--GIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL 186 (433)
T ss_pred CceeccCHhheeCC--Cceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEE
Confidence 35777888888864 36799999 9999999999999999999999999999999998765
No 322
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.98 E-value=6.5e-06 Score=94.05 Aligned_cols=40 Identities=30% Similarity=0.443 Sum_probs=36.2
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHH
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVN 496 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~k 496 (510)
.++++|++. ..|+|+|++||+||.++|+|+||||||||++
T Consensus 612 ~l~l~~~~~--------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~ 651 (924)
T TIGR00630 612 FLTLKGARE--------NNLKNITVSIPLGLFTCITGVSGSGKSTLIN 651 (924)
T ss_pred eEEEEeCcc--------CCcCceEEEEeCCCEEEEECCCCCCHHHHHH
Confidence 589999862 2599999999999999999999999999997
No 323
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.98 E-value=6.6e-06 Score=76.53 Aligned_cols=39 Identities=31% Similarity=0.505 Sum_probs=36.4
Q ss_pred CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
..+.+++|++...||+-++||+||||||-++|.++|...
T Consensus 20 vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~k 58 (330)
T COG4170 20 VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNK 58 (330)
T ss_pred eEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccc
Confidence 569999999999999999999999999999999998754
No 324
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.98 E-value=5.3e-06 Score=78.91 Aligned_cols=35 Identities=31% Similarity=0.340 Sum_probs=33.4
Q ss_pred CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 499 (510)
Q Consensus 465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~ 499 (510)
+.+.+|+++++++|+.++|+|||||||||+++.+.
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~ 50 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIA 50 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999999999999999999987
No 325
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.93 E-value=7.4e-06 Score=87.66 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=49.6
Q ss_pred EEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 452 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 452 f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
++|++..|.. ..+++++++.+.+|+.++|+|++|||||||++.|.|+.+|.+|++
T Consensus 187 ~~d~~~v~Gq---~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e 241 (506)
T PRK09862 187 QHDLSDVIGQ---EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEE 241 (506)
T ss_pred ccCeEEEECc---HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcE
Confidence 4588888853 359999999999999999999999999999999999999999975
No 326
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.92 E-value=9e-06 Score=85.10 Aligned_cols=44 Identities=27% Similarity=0.389 Sum_probs=41.7
Q ss_pred CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
..+++++ +++.+||+++|+|+||+|||||+++|+|..+|+.|.|
T Consensus 125 i~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi 168 (413)
T TIGR03497 125 IKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVI 168 (413)
T ss_pred ceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEE
Confidence 5699999 9999999999999999999999999999999998865
No 327
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.91 E-value=7.9e-06 Score=85.98 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=41.9
Q ss_pred CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 464 ~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
+..+++++ +++.+||+++|+|+||+|||||++.|+|..+|+.|.+
T Consensus 132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi 176 (422)
T TIGR02546 132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVI 176 (422)
T ss_pred Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEE
Confidence 35699999 9999999999999999999999999999999998765
No 328
>PRK09099 type III secretion system ATPase; Provisional
Probab=97.91 E-value=1.1e-05 Score=84.95 Aligned_cols=45 Identities=22% Similarity=0.350 Sum_probs=41.9
Q ss_pred CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 464 ~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
+..+++++ +++.+||+++|+|+||+|||||++.++|..+++.|.|
T Consensus 150 Gi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi 194 (441)
T PRK09099 150 GVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVI 194 (441)
T ss_pred Cceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEE
Confidence 35689999 9999999999999999999999999999999988765
No 329
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.89 E-value=7.1e-06 Score=78.99 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=40.0
Q ss_pred CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhc-ccCCCCce
Q 010471 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR-LYEPSDGQ 508 (510)
Q Consensus 465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g-~y~p~sG~ 508 (510)
+.+.+|+++++.+|++++|.||||+||||+++.+.+ -+.++.|.
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~ 62 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGS 62 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 479999999999999999999999999999999999 66677774
No 330
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.89 E-value=6.8e-06 Score=83.32 Aligned_cols=39 Identities=28% Similarity=0.445 Sum_probs=35.7
Q ss_pred ceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 471 isltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
+++.+++|+.++|+|++||||||+++.|+++++|..|.+
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv 175 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERII 175 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEE
Confidence 557788999999999999999999999999999988854
No 331
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.89 E-value=8.1e-06 Score=86.14 Aligned_cols=44 Identities=27% Similarity=0.400 Sum_probs=41.1
Q ss_pred CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
..+++++ ++|.+||+++|+|+||+|||||++.|+|..+|+.|.|
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi 194 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVI 194 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEE
Confidence 5699999 9999999999999999999999999999999987754
No 332
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.88 E-value=1.9e-05 Score=82.81 Aligned_cols=58 Identities=19% Similarity=0.287 Sum_probs=50.1
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
.++-++++-.|.. +..+++++ +++.+||+++|+|+||+|||||++.|+|..+|+.|.|
T Consensus 130 ~~~r~~i~~~l~T--GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI 187 (432)
T PRK06793 130 AFEREEITDVFET--GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVI 187 (432)
T ss_pred chheechhhccCC--CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEE
Confidence 4666777777754 35688885 9999999999999999999999999999999999876
No 333
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.87 E-value=1.1e-05 Score=96.94 Aligned_cols=53 Identities=28% Similarity=0.417 Sum_probs=43.0
Q ss_pred EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
.+.+++++.|.. .+.|+|+|++|++||.++|+|+||||||||+..+ +|. +|++
T Consensus 936 l~~~~i~i~~~~---~~~lk~isl~i~~gei~~itG~nGsGKStL~~~~--L~~--~G~~ 988 (1809)
T PRK00635 936 PVPADITIKNAY---QHNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI--LYA--AGNI 988 (1809)
T ss_pred cccceEEEeccc---cccccceeEEecCCcEEEEECCCCCChhHHHHHH--HHh--hccE
Confidence 446678888742 2479999999999999999999999999988766 554 6765
No 334
>PLN02796 D-glycerate 3-kinase
Probab=97.87 E-value=4.1e-06 Score=84.94 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=36.2
Q ss_pred CccccceEEe---eCCCE-----EEEEcCCCCcHHHHHHHHhcccCCC
Q 010471 466 PILNHVCLTI---EANEV-----VAIVGLSGSGKSTFVNLLLRLYEPS 505 (510)
Q Consensus 466 ~vL~nisltI---~~Ge~-----vAIVG~SGSGKSTL~kLL~g~y~p~ 505 (510)
.++++++..+ ++|+. +||+|+||||||||++.|.+++++.
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~ 127 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNAT 127 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 5788898888 67887 9999999999999999999999875
No 335
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.86 E-value=1.4e-05 Score=76.01 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=27.0
Q ss_pred CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 499 (510)
Q Consensus 466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~ 499 (510)
.+..| +++.+|++++|+|+|||||||+++.+.
T Consensus 19 ~~~~~--~~l~~~~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 19 FVPND--INLGSGRLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEeee--EEEcCCeEEEEECCCCCccHHHHHHHH
Confidence 44554 455589999999999999999999998
No 336
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.86 E-value=1.6e-05 Score=91.36 Aligned_cols=54 Identities=26% Similarity=0.442 Sum_probs=43.6
Q ss_pred cEEEEeeeEECCC-CCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 449 HVQFVNISFHYPS-RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 449 ~I~f~nVsF~Y~~-~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
-...+|+.|.=+. ++.+.+|+|||=-++||..+||+|+||||||||++.|+|=-
T Consensus 787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~ 841 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRK 841 (1391)
T ss_pred eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCc
Confidence 3455566665432 23567999999999999999999999999999999998743
No 337
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=97.85 E-value=1.4e-05 Score=84.08 Aligned_cols=41 Identities=22% Similarity=0.430 Sum_probs=38.4
Q ss_pred CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (510)
Q Consensus 464 ~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~ 505 (510)
+..+++++ ++|.+||+++|+|+||+|||||+++|+|+.+|+
T Consensus 155 Gi~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~d 195 (451)
T PRK05688 155 GIRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEAD 195 (451)
T ss_pred ceeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45689999 999999999999999999999999999999886
No 338
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.83 E-value=2e-05 Score=94.60 Aligned_cols=40 Identities=23% Similarity=0.470 Sum_probs=36.1
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHH
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVN 496 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~k 496 (510)
.++++|++. ..|+|+|++||+||.++|+|+||||||||++
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~ 639 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLIN 639 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence 588888751 3799999999999999999999999999999
No 339
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.79 E-value=1.6e-05 Score=83.25 Aligned_cols=44 Identities=25% Similarity=0.357 Sum_probs=40.1
Q ss_pred CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
..+++ .++++.+||+++|+|+||+|||||++.|+|..+|+.|.|
T Consensus 128 i~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi 171 (418)
T TIGR03498 128 VRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVI 171 (418)
T ss_pred cEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEE
Confidence 45665 699999999999999999999999999999999998865
No 340
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=97.79 E-value=2e-05 Score=82.35 Aligned_cols=40 Identities=25% Similarity=0.385 Sum_probs=36.5
Q ss_pred CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (510)
Q Consensus 465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~ 505 (510)
..+++.+ ++|.+||+++|+|+||+|||||++.|+|..+++
T Consensus 150 i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d 189 (444)
T PRK08972 150 VRAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD 189 (444)
T ss_pred ceeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCCCC
Confidence 4578877 999999999999999999999999999988774
No 341
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.78 E-value=2.9e-05 Score=81.28 Aligned_cols=57 Identities=26% Similarity=0.289 Sum_probs=47.4
Q ss_pred EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
.+-+.++-.|.. +..+++.+ +++.+||+++|+|+||+|||||++.|+|+.+|+.|.|
T Consensus 112 ~~R~~~~~~~~t--Gi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi 168 (411)
T TIGR03496 112 LKRAPIDEPLDV--GVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVV 168 (411)
T ss_pred HhccCcceEeee--eEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEE
Confidence 444455666643 35799999 9999999999999999999999999999999986654
No 342
>PRK01889 GTPase RsgA; Reviewed
Probab=97.77 E-value=9.2e-06 Score=83.92 Aligned_cols=43 Identities=37% Similarity=0.442 Sum_probs=39.4
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
-++.+.-.+++|++++|||+||+|||||++.|+|...|..|+|
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i 226 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAV 226 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeE
Confidence 3666777789999999999999999999999999999999987
No 343
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=97.76 E-value=2e-05 Score=82.68 Aligned_cols=44 Identities=25% Similarity=0.304 Sum_probs=40.2
Q ss_pred CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
..+++++ +++.+||+++|+|+||+|||||++.|++..+++.+.|
T Consensus 145 i~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi 188 (434)
T PRK08472 145 VKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVV 188 (434)
T ss_pred hHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEE
Confidence 4589999 9999999999999999999999999999988876654
No 344
>PRK05922 type III secretion system ATPase; Validated
Probab=97.74 E-value=3.1e-05 Score=81.19 Aligned_cols=44 Identities=16% Similarity=0.335 Sum_probs=40.4
Q ss_pred CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
..+++.+ +++.+||+++|+|+||+|||||++.|+|..+++.|.+
T Consensus 145 Ir~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi 188 (434)
T PRK05922 145 IKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVI 188 (434)
T ss_pred ceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEE
Confidence 4578876 9999999999999999999999999999999998865
No 345
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.73 E-value=3e-05 Score=88.97 Aligned_cols=43 Identities=30% Similarity=0.416 Sum_probs=37.3
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 499 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~ 499 (510)
.|+++|++. ..|+|+|++||+||.++|+|.||||||||++-++
T Consensus 614 ~L~v~~l~~--------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l 656 (943)
T PRK00349 614 FLKLKGARE--------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETL 656 (943)
T ss_pred eEEecCCcc--------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHH
Confidence 588888851 2599999999999999999999999999997653
No 346
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.72 E-value=1.7e-05 Score=78.53 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=38.1
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEee-------CCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIE-------ANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~-------~Ge~vAIVG~SGSGKSTL~kLL~g~y~p 504 (510)
.|.|+++++.|+.- -+.+++|++++++ +|++++++|++|+||||+++.|++.+..
T Consensus 40 ~i~f~~~~~~~~~v-l~~v~~~l~~~~~~~~~~~~~~~~i~~~G~~g~GKTtl~~~l~~~l~~ 101 (270)
T PRK06731 40 KVKFENATMITEEV-IEYILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHG 101 (270)
T ss_pred eEEecCCCccccHH-HHHHhcccEEeeCCcccccCCCCEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 45555555555321 1234566666665 5699999999999999999999887643
No 347
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.72 E-value=1.9e-05 Score=76.52 Aligned_cols=32 Identities=31% Similarity=0.489 Sum_probs=29.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcccCCCCce
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~ 508 (510)
+...+||.|+||||||||++.|.+...+++|.
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~ 63 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGEL 63 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence 45799999999999999999999999999987
No 348
>PRK06936 type III secretion system ATPase; Provisional
Probab=97.70 E-value=3.4e-05 Score=80.88 Aligned_cols=41 Identities=29% Similarity=0.437 Sum_probs=38.1
Q ss_pred CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (510)
Q Consensus 464 ~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~ 505 (510)
+..+++++ +++.+||+++|+|+||||||||++.|+|..+++
T Consensus 149 Gi~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~d 189 (439)
T PRK06936 149 GVRVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVD 189 (439)
T ss_pred Ccceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCCCC
Confidence 35689999 999999999999999999999999999998875
No 349
>PRK06820 type III secretion system ATPase; Validated
Probab=97.68 E-value=4e-05 Score=80.59 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=39.8
Q ss_pred CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507 (510)
Q Consensus 464 ~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG 507 (510)
+..+++++ +++.+||+++|+|+||+|||||++.+++..+|+.+
T Consensus 150 Gi~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv~ 192 (440)
T PRK06820 150 GIRAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADVM 192 (440)
T ss_pred CCceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCCCCEE
Confidence 36799999 99999999999999999999999999999988764
No 350
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.66 E-value=4.1e-05 Score=69.59 Aligned_cols=33 Identities=30% Similarity=0.541 Sum_probs=24.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
+|++++++|+||+|||||+|.|.+-.+..-|+|
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~i 66 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPEAKQKTGEI 66 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTSS----S--
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhhcchhhhhh
Confidence 469999999999999999999998776666665
No 351
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.65 E-value=5.9e-05 Score=77.77 Aligned_cols=53 Identities=34% Similarity=0.609 Sum_probs=42.5
Q ss_pred eeeEECCCCCCCCccccceEEee-----CCCEEEEEcCCCCcHHHHHHHHhcccCCCCce
Q 010471 454 NISFHYPSRPTVPILNHVCLTIE-----ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508 (510)
Q Consensus 454 nVsF~Y~~~~~~~vL~nisltI~-----~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~ 508 (510)
+.-++|++- ..-+.|+.|++. .||+++++||+|-||||++|+|+|..+|++|+
T Consensus 340 ~~lv~y~~~--~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~ 397 (591)
T COG1245 340 DTLVEYPDL--KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS 397 (591)
T ss_pred ceeeecchh--eeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC
Confidence 445567642 345667777765 56799999999999999999999999999995
No 352
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.63 E-value=4.4e-05 Score=75.64 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=29.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
+.++|+|++|||||||++.|+|++.|++|+|
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i 142 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQL 142 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceE
Confidence 6899999999999999999999999999986
No 353
>PRK00098 GTPase RsgA; Reviewed
Probab=97.62 E-value=4.6e-05 Score=76.89 Aligned_cols=33 Identities=39% Similarity=0.554 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
+|++++++|+||+|||||++.|+|...+..|+|
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v 195 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEI 195 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcce
Confidence 599999999999999999999999999998887
No 354
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.61 E-value=5.1e-05 Score=73.20 Aligned_cols=34 Identities=32% Similarity=0.400 Sum_probs=32.1
Q ss_pred CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHH
Q 010471 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL 498 (510)
Q Consensus 465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL 498 (510)
+.+.+|+++++++|+.++|+|||||||||+++.+
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i 50 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQI 50 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHH
Confidence 5799999999999999999999999999999986
No 355
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=97.60 E-value=3.9e-05 Score=80.53 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=35.9
Q ss_pred CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC
Q 010471 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506 (510)
Q Consensus 466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s 506 (510)
.+++.+ +++.+||+++|+|+||+|||||++.|+|+.+|+.
T Consensus 164 raID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~ 203 (455)
T PRK07960 164 RAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADV 203 (455)
T ss_pred eeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCE
Confidence 355555 9999999999999999999999999999999985
No 356
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.59 E-value=2.8e-05 Score=82.63 Aligned_cols=41 Identities=24% Similarity=0.291 Sum_probs=34.2
Q ss_pred cccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCce
Q 010471 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508 (510)
Q Consensus 468 L~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~ 508 (510)
+++.+..+++|+++++||++|+||||.+..|++.|.+..|.
T Consensus 246 ~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~ 286 (484)
T PRK06995 246 LDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA 286 (484)
T ss_pred ccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC
Confidence 33444556689999999999999999999999999887764
No 357
>PRK06315 type III secretion system ATPase; Provisional
Probab=97.58 E-value=4.3e-05 Score=80.37 Aligned_cols=41 Identities=27% Similarity=0.462 Sum_probs=36.4
Q ss_pred CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC
Q 010471 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506 (510)
Q Consensus 465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s 506 (510)
..+++++ ++|.+||+++|+|+||||||||++.|+|..++.+
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~ 192 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEAD 192 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCC
Confidence 4478888 9999999999999999999999999999885433
No 358
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.57 E-value=4.2e-05 Score=76.47 Aligned_cols=31 Identities=32% Similarity=0.488 Sum_probs=27.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcccC--CCCcee
Q 010471 479 EVVAIVGLSGSGKSTFVNLLLRLYE--PSDGQV 509 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~g~y~--p~sG~I 509 (510)
.++||.|+|||||||+++.|.++.. |.+|+|
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V 95 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKV 95 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCce
Confidence 4899999999999999999999988 777764
No 359
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.56 E-value=5.5e-05 Score=81.10 Aligned_cols=44 Identities=27% Similarity=0.419 Sum_probs=38.2
Q ss_pred CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHh---cccCCCCcee
Q 010471 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL---RLYEPSDGQV 509 (510)
Q Consensus 465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~---g~y~p~sG~I 509 (510)
.-.++|+-+.+ +|..+||.|+|||||||+++.|+ |+.-.+.|.+
T Consensus 272 ~RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~ 318 (512)
T PRK13477 272 TRLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAM 318 (512)
T ss_pred eEEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCce
Confidence 45899999988 88999999999999999999999 6666666764
No 360
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=8.1e-05 Score=77.82 Aligned_cols=61 Identities=25% Similarity=0.415 Sum_probs=55.5
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
..+++.+|+|.|+.++- +.+.++++.+..-+++++||++|+||||+.|++.+-.+|..|.+
T Consensus 361 p~l~i~~V~f~y~p~~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~ 421 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIV 421 (582)
T ss_pred CeeEEEeeeccCCCcch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCccccee
Confidence 46999999999975432 79999999999999999999999999999999999999999865
No 361
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.54 E-value=5.4e-05 Score=72.75 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=31.8
Q ss_pred CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 500 (510)
Q Consensus 465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g 500 (510)
..|.+|+++++++ +.++|+|||||||||+++.+.+
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHH
Confidence 4689999999988 9999999999999999999863
No 362
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.51 E-value=3.8e-05 Score=78.37 Aligned_cols=36 Identities=33% Similarity=0.509 Sum_probs=32.5
Q ss_pred ccceEEeeC--CCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471 469 NHVCLTIEA--NEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (510)
Q Consensus 469 ~nisltI~~--Ge~vAIVG~SGSGKSTL~kLL~g~y~p 504 (510)
++|+..+++ +++++|+|+||||||||++.|++.|.+
T Consensus 151 ~~i~~~~~~~~~~~~~~~G~~~~gkstl~~~l~~~~~~ 188 (325)
T TIGR01526 151 KHIPREVRPFFVKTVAILGGESTGKSTLVNKLAAVFNT 188 (325)
T ss_pred HhCCHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 357788889 999999999999999999999999865
No 363
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.48 E-value=8.2e-05 Score=74.67 Aligned_cols=41 Identities=32% Similarity=0.516 Sum_probs=34.9
Q ss_pred cccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 468 L~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
++++.-.++ |++++++|+||+|||||++.|+|...+..|+|
T Consensus 152 i~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v 192 (287)
T cd01854 152 LDELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEI 192 (287)
T ss_pred HHHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccce
Confidence 344555555 59999999999999999999999999998876
No 364
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.45 E-value=0.00057 Score=71.49 Aligned_cols=62 Identities=26% Similarity=0.477 Sum_probs=54.8
Q ss_pred cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
+.-++++|++-.=. + +.+.++||||++.+||+++|.|-+|-|-+-|+.+|+|+..|.+|+|+
T Consensus 255 ~~vL~V~~L~v~~~-~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~ 316 (501)
T COG3845 255 EVVLEVEDLSVKDR-R-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRIL 316 (501)
T ss_pred CeEEEEeeeEeecC-C-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEE
Confidence 34588899998753 2 35789999999999999999999999999999999999999999984
No 365
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.44 E-value=6.2e-05 Score=83.77 Aligned_cols=41 Identities=27% Similarity=0.357 Sum_probs=35.9
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507 (510)
Q Consensus 467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG 507 (510)
++++.++.+++|+++++|||+|+||||.+.-|++.|...+|
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G 214 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREG 214 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcC
Confidence 56667777888999999999999999999999999877766
No 366
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.41 E-value=3.1e-05 Score=76.65 Aligned_cols=49 Identities=27% Similarity=0.480 Sum_probs=41.0
Q ss_pred EECCCCCCCCccccceEEeeCCC-EEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471 457 FHYPSRPTVPILNHVCLTIEANE-VVAIVGLSGSGKSTFVNLLLRLYEPS 505 (510)
Q Consensus 457 F~Y~~~~~~~vL~nisltI~~Ge-~vAIVG~SGSGKSTL~kLL~g~y~p~ 505 (510)
|-|++...+.+++.++..+++|+ .+.|+|++||||||+++.+.+.+++.
T Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~ 70 (269)
T TIGR03015 21 FFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQE 70 (269)
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCC
Confidence 55766555569999999888877 89999999999999999999887753
No 367
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.38 E-value=0.00018 Score=81.35 Aligned_cols=52 Identities=27% Similarity=0.407 Sum_probs=40.3
Q ss_pred ccEEEEeeeEECCCCCCCCcccc-----ceEEeeCC-CEEEEEcCCCCcHHHHHHHHhcc-cCCCCc
Q 010471 448 GHVQFVNISFHYPSRPTVPILNH-----VCLTIEAN-EVVAIVGLSGSGKSTFVNLLLRL-YEPSDG 507 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~n-----isltI~~G-e~vAIVG~SGSGKSTL~kLL~g~-y~p~sG 507 (510)
+.|.++|+.. |++++ +|+++.+| +.++|+||||+||||++|.+.+. +-++.|
T Consensus 294 ~~i~l~~~rh--------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G 352 (771)
T TIGR01069 294 GKIILENARH--------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG 352 (771)
T ss_pred CCEEEccccC--------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC
Confidence 3577776553 34433 78888888 89999999999999999999988 555555
No 368
>PRK09183 transposase/IS protein; Provisional
Probab=97.37 E-value=6.1e-05 Score=74.43 Aligned_cols=50 Identities=26% Similarity=0.398 Sum_probs=37.6
Q ss_pred EEEeeeEECCCCCCC---CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 451 QFVNISFHYPSRPTV---PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 451 ~f~nVsF~Y~~~~~~---~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
.+++..|+++...++ ..|.++++ +++|+.+.|+||+|+|||+|+..|...
T Consensus 73 ~l~~fd~~~~~~~~~~~i~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 73 TFEEYDFTFATGAPQKQLQSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred cHhhcccccCCCCCHHHHHHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 344556666432222 24778888 999999999999999999999999654
No 369
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=97.37 E-value=0.00017 Score=75.76 Aligned_cols=37 Identities=27% Similarity=0.315 Sum_probs=34.4
Q ss_pred cceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC
Q 010471 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506 (510)
Q Consensus 470 nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s 506 (510)
|.-+++.+||+++|+|+||+|||||++.|.+..+|+.
T Consensus 150 D~l~~i~~Gqri~I~G~sG~GKTtLL~~I~~~~~~d~ 186 (442)
T PRK08927 150 NTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNADADV 186 (442)
T ss_pred eeeeEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCE
Confidence 5679999999999999999999999999999998863
No 370
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.30 E-value=0.00012 Score=78.67 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=42.3
Q ss_pred CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
..+.+++++.+..|+.+.++|++||||||+++.+.++++|.+|++
T Consensus 198 ~~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~ 242 (499)
T TIGR00368 198 QHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEE 242 (499)
T ss_pred HHHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcE
Confidence 358999999999999999999999999999999999999998874
No 371
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.30 E-value=0.00013 Score=74.21 Aligned_cols=34 Identities=29% Similarity=0.495 Sum_probs=31.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
++|+++++|||+||||||++.-|++.+.+..|+|
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V 145 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKV 145 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeE
Confidence 4789999999999999999999999999887776
No 372
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.30 E-value=0.0002 Score=67.89 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=25.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHh--------cccCCCCc
Q 010471 479 EVVAIVGLSGSGKSTFVNLLL--------RLYEPSDG 507 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~--------g~y~p~sG 507 (510)
++++|+||+|||||||++.+. |++-|...
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~ 65 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAE 65 (200)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccc
Confidence 579999999999999999999 88877654
No 373
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.30 E-value=0.00019 Score=74.10 Aligned_cols=28 Identities=36% Similarity=0.567 Sum_probs=26.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
++|..++|+||+||||||+++.|++++.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4899999999999999999999999985
No 374
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.28 E-value=0.45 Score=52.71 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010471 182 VTSGIFSGLRSGCFSIANIVLVKRLRETLYSALL 215 (510)
Q Consensus 182 ~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll 215 (510)
++..++..+..+.......++..++|.++-+.+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 96 (588)
T PRK13657 63 AGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYF 96 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555666666777776655443
No 375
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.28 E-value=0.00012 Score=75.47 Aligned_cols=40 Identities=28% Similarity=0.352 Sum_probs=34.6
Q ss_pred CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (510)
Q Consensus 465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p 504 (510)
.+++++.+..+++|+++++|||+|+||||++.-|++.+..
T Consensus 124 l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~ 163 (374)
T PRK14722 124 LPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVM 163 (374)
T ss_pred chhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4578888889999999999999999999999888876543
No 376
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.23 E-value=0.00028 Score=62.12 Aligned_cols=32 Identities=31% Similarity=0.375 Sum_probs=28.4
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~ 505 (510)
.+++|+.++|.|+.||||||++|.+++-....
T Consensus 18 ~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 18 PLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred hCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 45799999999999999999999999887643
No 377
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.22 E-value=0.00021 Score=74.91 Aligned_cols=27 Identities=33% Similarity=0.396 Sum_probs=24.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
++|+++++||++|+||||+++.|++.|
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999998864
No 378
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.22 E-value=0.00016 Score=73.14 Aligned_cols=39 Identities=26% Similarity=0.324 Sum_probs=35.4
Q ss_pred CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (510)
Q Consensus 466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p 504 (510)
.+|++++.+.++++.++|+|++||||||+++.|.+.+..
T Consensus 22 ~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~ 60 (300)
T TIGR00750 22 QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRR 60 (300)
T ss_pred HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999998887643
No 379
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=97.16 E-value=0.00027 Score=77.74 Aligned_cols=40 Identities=28% Similarity=0.431 Sum_probs=33.9
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHH
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVN 496 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~k 496 (510)
.+++++++ ..=|+||+.+||=|..|+|.|-||||||||++
T Consensus 606 ~L~l~gA~--------~nNLkni~v~iPLg~~t~VTGVSGSGKSTLIn 645 (935)
T COG0178 606 WLELKGAR--------RNNLKNIDVEIPLGVFTCVTGVSGSGKSTLIN 645 (935)
T ss_pred eEEEeccc--------ccCcccceeecccccEEEEEecCCCCHHHhHH
Confidence 47776543 23599999999999999999999999999993
No 380
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.15 E-value=0.0003 Score=72.09 Aligned_cols=36 Identities=22% Similarity=0.423 Sum_probs=32.3
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
-+++|..+.|+|++||||||+++.|+++.+++++-|
T Consensus 158 ~v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~riv 193 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLI 193 (344)
T ss_pred HHHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEE
Confidence 367899999999999999999999999999987654
No 381
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.09 E-value=0.00048 Score=66.19 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=33.8
Q ss_pred CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
..|.+|+++++++|++++|.||+|+||||+++.+...
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~ 53 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLA 53 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHH
Confidence 4799999999999999999999999999999887643
No 382
>PLN02165 adenylate isopentenyltransferase
Probab=97.08 E-value=0.0004 Score=70.37 Aligned_cols=28 Identities=36% Similarity=0.475 Sum_probs=25.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
++|+.++|+||+|||||||+..|++.+.
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 4789999999999999999999999875
No 383
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.04 E-value=0.00039 Score=72.04 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=24.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471 479 EVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~g~y~p~ 505 (510)
=+|||.|+||||||||++.|.++.++.
T Consensus 213 lIIGIsG~qGSGKSTLa~~L~~lL~~~ 239 (460)
T PLN03046 213 LVIGFSAPQGCGKTTLVFALDYLFRVT 239 (460)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 468999999999999999999988765
No 384
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.99 E-value=0.00051 Score=53.35 Aligned_cols=23 Identities=48% Similarity=0.592 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 010471 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
.++|.|++||||||+++.|...+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998874
No 385
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.97 E-value=0.00055 Score=73.86 Aligned_cols=30 Identities=33% Similarity=0.595 Sum_probs=26.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
-.|||.|+||||||||++.|.++. |..|.|
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglL-p~vgvI 95 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVI 95 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhC-CCcEEE
Confidence 489999999999999999999997 555554
No 386
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.87 E-value=0.00065 Score=65.10 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=27.2
Q ss_pred CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 499 (510)
Q Consensus 466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~ 499 (510)
.|-+|++++=..+.+++|+||+|+||||++|.+.
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHH
Confidence 5667776652223899999999999999999987
No 387
>PRK12288 GTPase RsgA; Reviewed
Probab=96.87 E-value=0.00061 Score=70.10 Aligned_cols=33 Identities=39% Similarity=0.507 Sum_probs=28.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
.+++++|||+||.|||||+|.|++-....-|+|
T Consensus 204 ~~ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~i 236 (347)
T PRK12288 204 TGRISIFVGQSGVGKSSLINALLPEAEILVGDV 236 (347)
T ss_pred hhCCEEEECCCCCCHHHHHHHhccccceeeccc
Confidence 367899999999999999999998877766665
No 388
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.86 E-value=0.00083 Score=65.82 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=29.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
.++.++++|+||.|||||++.|++-.....|+|
T Consensus 119 ~~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i 151 (245)
T TIGR00157 119 QNRISVFAGQSGVGKSSLINALDPSVKQQVNDI 151 (245)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhhhhhccccce
Confidence 468999999999999999999999877776665
No 389
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.84 E-value=0.0013 Score=79.21 Aligned_cols=32 Identities=28% Similarity=0.583 Sum_probs=27.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHH----hcccCCC-Ccee
Q 010471 478 NEVVAIVGLSGSGKSTFVNLL----LRLYEPS-DGQV 509 (510)
Q Consensus 478 Ge~vAIVG~SGSGKSTL~kLL----~g~y~p~-sG~I 509 (510)
...++||||+|||||||+..| .|..+|. .|.+
T Consensus 28 ~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~ 64 (1311)
T TIGR00606 28 SPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNT 64 (1311)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCce
Confidence 359999999999999999998 5999996 5653
No 390
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=96.76 E-value=0.0011 Score=68.72 Aligned_cols=52 Identities=29% Similarity=0.369 Sum_probs=39.8
Q ss_pred eeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCce
Q 010471 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508 (510)
Q Consensus 454 nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~ 508 (510)
++.-+|..+ -..|..+= +.++|++++|+|++|-||||-+|+|+|-..|+=|+
T Consensus 79 e~vHRYg~N--gFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~ 130 (591)
T COG1245 79 EVVHRYGVN--GFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGR 130 (591)
T ss_pred cceeeccCC--ceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCC
Confidence 456677532 23333331 45699999999999999999999999999998775
No 391
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.75 E-value=0.0014 Score=67.42 Aligned_cols=48 Identities=21% Similarity=0.331 Sum_probs=42.7
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 499 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~ 499 (510)
+|.++|.+.+-.+ ...+.|-|++|-.|...++|||+|-|||||++-|+
T Consensus 264 DIKiEnF~ISA~G---k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa 311 (807)
T KOG0066|consen 264 DIKIENFDISAQG---KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIA 311 (807)
T ss_pred cceeeeeeeeccc---ceeeeccceEEEecceecccCCCCCchHHHHHHHH
Confidence 6888888888754 46999999999999999999999999999998775
No 392
>PRK12289 GTPase RsgA; Reviewed
Probab=96.70 E-value=0.0013 Score=67.71 Aligned_cols=33 Identities=36% Similarity=0.542 Sum_probs=28.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
.+++++|+|+||.|||||+|.|++-....-|+|
T Consensus 171 ~~ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~v 203 (352)
T PRK12289 171 RNKITVVAGPSGVGKSSLINRLIPDVELRVGKV 203 (352)
T ss_pred ccceEEEEeCCCCCHHHHHHHHcCccccccccc
Confidence 467899999999999999999998777666654
No 393
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.69 E-value=0.001 Score=66.07 Aligned_cols=34 Identities=35% Similarity=0.594 Sum_probs=28.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
-+|++++++|+||-|||||+|.|.+--+-.-|+|
T Consensus 162 l~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eI 195 (301)
T COG1162 162 LAGKITVLLGQSGVGKSTLINALLPELNQKTGEI 195 (301)
T ss_pred hcCCeEEEECCCCCcHHHHHHhhCchhhhhhhhh
Confidence 4788999999999999999999988655555555
No 394
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.69 E-value=0.0014 Score=67.48 Aligned_cols=35 Identities=23% Similarity=0.451 Sum_probs=29.6
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcccCC-CCcee
Q 010471 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQV 509 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-~sG~I 509 (510)
.+++..+.|.||+||||||+++.|++.+++ .+|.|
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i 154 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHI 154 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEE
Confidence 457899999999999999999999997764 45655
No 395
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=96.68 E-value=1.6 Score=49.15 Aligned_cols=114 Identities=16% Similarity=-0.025 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 192 SGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLT----ADCQRLSNVIGNDINMILRNSLQGAGAFINLL 267 (510)
Q Consensus 192 ~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~----~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~ 267 (510)
..+..+...++..++|.++.+++.+..+..+...+....-++.. .=++.++.+ ...+...+..++..++.++...
T Consensus 152 ~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~~~g~~~srlt~Dv~~i-~~~~~~~~~~l~~~~~~ii~~~ 230 (659)
T TIGR00954 152 NSAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDSRIQNPDQLLTQDVEKF-CDSVVELYSNLTKPILDVILYS 230 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455666777777777777766655554444332211222 112233333 3333444444444444444333
Q ss_pred HHhH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 010471 268 TLSW-PLTLSALLICSFLSIIVSVYGQY-QKRASVLTQECN 306 (510)
Q Consensus 268 ~~s~-~l~li~li~~~l~~~~~~~~~~~-~~~~~~~~~~~~ 306 (510)
.+=+ .+.....+++.++..+..+..++ .++..+...+..
T Consensus 231 ~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~ 271 (659)
T TIGR00954 231 FKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQ 271 (659)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHH
Confidence 3333 25454434333333333333333 344444343333
No 396
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.67 E-value=0.0015 Score=57.00 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=25.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p 504 (510)
+.+..+.|+|++|+||||+++.+.+.+..
T Consensus 17 ~~~~~v~i~G~~G~GKT~l~~~i~~~~~~ 45 (151)
T cd00009 17 PPPKNLLLYGPPGTGKTTLARAIANELFR 45 (151)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 37788999999999999999999988743
No 397
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=96.54 E-value=0.0019 Score=66.31 Aligned_cols=35 Identities=37% Similarity=0.538 Sum_probs=32.3
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
++.+..+.|+|++||||||+++.|+++.+|++|.|
T Consensus 175 v~~~~~ili~G~tGsGKTTll~al~~~i~~~~riv 209 (340)
T TIGR03819 175 VAARLAFLISGGTGSGKTTLLSALLALVAPDERIV 209 (340)
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHccCCCCCcEE
Confidence 56789999999999999999999999999998865
No 398
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.53 E-value=0.0021 Score=64.01 Aligned_cols=34 Identities=26% Similarity=0.282 Sum_probs=28.6
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG 507 (510)
.=+.+..++|+|++|||||||++.+.+......+
T Consensus 100 ~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~ 133 (290)
T PRK10463 100 AARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVP 133 (290)
T ss_pred HhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCC
Confidence 3467999999999999999999999887766543
No 399
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.46 E-value=0.0018 Score=66.68 Aligned_cols=29 Identities=21% Similarity=0.405 Sum_probs=25.1
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
.+.+|+++++|||+||||||++.-|+..+
T Consensus 202 ~~~~~~ii~lvGptGvGKTTt~akLA~~l 230 (407)
T PRK12726 202 DLSNHRIISLIGQTGVGKTTTLVKLGWQL 230 (407)
T ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998887654
No 400
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.46 E-value=0.0022 Score=58.10 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
++-.+++||+||.|||||+|.|.|--.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~ 127 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKV 127 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCc
Confidence 345789999999999999999988544
No 401
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=96.43 E-value=0.0032 Score=72.24 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=33.1
Q ss_pred ceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 471 isltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
+|+.+.++..++|+|+|||||||+++.|++.+....++|
T Consensus 439 ~n~~~~~~~~~~i~G~tGsGKS~l~~~l~~~~~~~~~~i 477 (800)
T PRK13898 439 FNFHVRDVGHTLIIGPTGAGKTVLMNFLCAQAMKFSPRM 477 (800)
T ss_pred EEEEEcCCCEEEEECCCCCcHHHHHHHHHhhcccCCCeE
Confidence 467778888999999999999999999999776665554
No 402
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.42 E-value=0.0022 Score=67.29 Aligned_cols=27 Identities=44% Similarity=0.644 Sum_probs=24.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471 479 EVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~g~y~p~ 505 (510)
++|+|+|++|||||||++.|++.|...
T Consensus 220 ~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 220 RTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 689999999999999999999987543
No 403
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=96.42 E-value=0.0033 Score=66.83 Aligned_cols=55 Identities=25% Similarity=0.435 Sum_probs=47.7
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
-.+++|++.. ..++|+||++.+||+++|-|-=|||+|=+++.|.|..++.+|+|.
T Consensus 263 ~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~ 317 (500)
T COG1129 263 VLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEIL 317 (500)
T ss_pred EEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEE
Confidence 3566766533 258999999999999999999999999999999999999999984
No 404
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.42 E-value=0.0021 Score=65.79 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=28.4
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC
Q 010471 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s 506 (510)
++.+..+.|+|++||||||+++.|+++.++++
T Consensus 157 v~~~~nili~G~tgSGKTTll~aL~~~ip~~~ 188 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTFTNAALREIPAIE 188 (332)
T ss_pred HHcCCcEEEECCCCCCHHHHHHHHHhhCCCCC
Confidence 45788999999999999999999999987653
No 405
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.37 E-value=0.0027 Score=61.32 Aligned_cols=29 Identities=38% Similarity=0.578 Sum_probs=25.3
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
.++|+.++|||+||+|||||++.|.+.++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~ 64 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYT 64 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 45889999999999999999988887643
No 406
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=96.34 E-value=1 Score=43.00 Aligned_cols=168 Identities=13% Similarity=0.050 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010471 193 GCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQ-RLSNVIGNDINMILRNSLQGAGAFINLLTLSW 271 (510)
Q Consensus 193 ~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~-~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~ 271 (510)
........+...+++.++.+++.+.......+.....=...+.+-+. .+++ +...+...+..++..+...+..+.+-.
T Consensus 59 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~-i~~~~~~~~~~~~~~~~~~i~~~~~~~ 137 (275)
T PF00664_consen 59 YIYFYLSSRISQRIRKDLRKRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQ-IENFLSSSLFQIISSIISIIFSLILLF 137 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccc-ccccccccccccccccchhhhhhhccc
Confidence 33444566888999999999998887775555443333333333322 2222 233333333333333333333333333
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Q 010471 272 PLTLSALLICS-FLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRE 350 (510)
Q Consensus 272 ~l~li~li~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~ 350 (510)
.+.....+... +..+.........++..+...+..+..++......+.++-+|.-..-+.+....++ .++..+...+.
T Consensus 138 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~-~~~~~~~~~~~ 216 (275)
T PF00664_consen 138 FISWKLALILLIILPLLFLISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLER-FNKALEKYRKA 216 (275)
T ss_dssp HHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHH-HHHHHHHHHHH
T ss_pred ccccccccccchhhhhhHhhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHH-HHHHHHHHHHH
Confidence 33333333333 33333344444445555555555555555555566677777777666665444443 44444434444
Q ss_pred HHHHHHHHHHHH
Q 010471 351 SMAYGLWNMSFI 362 (510)
Q Consensus 351 ~~~~~~~~~~~~ 362 (510)
............
T Consensus 217 ~~~~~~~~~~~~ 228 (275)
T PF00664_consen 217 SFKYAKIQALLS 228 (275)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444443333
No 407
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.32 E-value=0.0027 Score=64.08 Aligned_cols=30 Identities=37% Similarity=0.497 Sum_probs=26.9
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p 504 (510)
+..+..+.|+|++||||||+++.|+++.+.
T Consensus 129 v~~~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 129 VLARKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred HHcCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 557889999999999999999999999853
No 408
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.32 E-value=0.0019 Score=71.33 Aligned_cols=38 Identities=29% Similarity=0.366 Sum_probs=34.6
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (510)
Q Consensus 467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p 504 (510)
.+++.++...+|+.+.|.||+||||||+++++++...+
T Consensus 99 ~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~ 136 (637)
T TIGR00602 99 WLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGI 136 (637)
T ss_pred HHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57888899999999999999999999999999997654
No 409
>COG3910 Predicted ATPase [General function prediction only]
Probab=96.31 E-value=0.0028 Score=58.45 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=18.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHh
Q 010471 479 EVVAIVGLSGSGKSTFVNLLL 499 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~ 499 (510)
.+|-|||++|||||||+-.|+
T Consensus 38 pIT~i~GENGsGKSTLLEaiA 58 (233)
T COG3910 38 PITFITGENGSGKSTLLEAIA 58 (233)
T ss_pred ceEEEEcCCCccHHHHHHHHH
Confidence 578899999999999997764
No 410
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.31 E-value=0.0023 Score=64.04 Aligned_cols=30 Identities=33% Similarity=0.463 Sum_probs=25.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~ 505 (510)
++|+.++||||+|+||||++.-|+..+...
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 478999999999999999998888776543
No 411
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=96.30 E-value=2.5 Score=46.92 Aligned_cols=34 Identities=18% Similarity=0.106 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010471 183 TSGIFSGLRSGCFSIANIVLVKRLRETLYSALLF 216 (510)
Q Consensus 183 ~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~ 216 (510)
+..++.++..+.......++..++|.++-+++.+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 97 (585)
T TIGR01192 64 GFGVFNTIAYVLVAREADRLAHGRRATLLTEAFG 97 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555666667777777776666653
No 412
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.30 E-value=0.0024 Score=68.35 Aligned_cols=26 Identities=38% Similarity=0.585 Sum_probs=22.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
++|++++|||++|+||||++.-|+..
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999666654
No 413
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.28 E-value=0.0041 Score=61.66 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=24.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p 504 (510)
.++..+.|.|++||||||+++.++...++
T Consensus 78 ~~~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 78 KPHGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 46678999999999999999977766654
No 414
>PTZ00202 tuzin; Provisional
Probab=96.28 E-value=0.002 Score=67.08 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=29.5
Q ss_pred CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
.+|++++.+.++ .++|+|++|||||||++.+.+-
T Consensus 276 ~VL~~~d~~~pr--ivvLtG~~G~GKTTLlR~~~~~ 309 (550)
T PTZ00202 276 QVLRRLDTAHPR--IVVFTGFRGCGKSSLCRSAVRK 309 (550)
T ss_pred HHHhccCCCCce--EEEEECCCCCCHHHHHHHHHhc
Confidence 378888888774 9999999999999999888764
No 415
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.27 E-value=0.003 Score=59.63 Aligned_cols=23 Identities=43% Similarity=0.559 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 010471 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
+|+|+|++|||||||++.+.+-.
T Consensus 43 ~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 43 TVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred eEEEECCCCCCHHHHHHHHhcch
Confidence 79999999999999999999863
No 416
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=96.27 E-value=2.9 Score=47.47 Aligned_cols=10 Identities=20% Similarity=0.454 Sum_probs=5.3
Q ss_pred ccccceEEee
Q 010471 467 ILNHVCLTIE 476 (510)
Q Consensus 467 vL~nisltI~ 476 (510)
.++|++|.-+
T Consensus 475 ~~~~vsf~y~ 484 (708)
T TIGR01193 475 VINDVSYSYG 484 (708)
T ss_pred EEEEEEEEcC
Confidence 3555555554
No 417
>COG1133 SbmA ABC-type long-chain fatty acid transport system, fused permease and ATPase components [Lipid metabolism]
Probab=96.26 E-value=1.4 Score=43.69 Aligned_cols=196 Identities=13% Similarity=0.105 Sum_probs=103.6
Q ss_pred CchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------------HHHHHHHHHHHHHHHHHHH
Q 010471 226 AVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPL-------------TLSALLICSFLSIIVSVYG 292 (510)
Q Consensus 226 ~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l-------------~li~li~~~l~~~~~~~~~ 292 (510)
+.-.-.+|+..|+.+.+..+...-..++.++++.+..+=+++.+|-.. ...+++....-.......+
T Consensus 182 hIEGasQRvQEDTmrFSstlE~LGvsfi~siMTLiaFlPvL~~ls~~Vs~Lpiig~ip~~Lv~aAi~wslfGtv~la~vG 261 (405)
T COG1133 182 HIEGASQRVQEDTMRFSSTLENLGVSFINAIMTLIAFLPVLFTLSAHVSELPIIGHIPHALVWAAIVWSLFGTVLLAVVG 261 (405)
T ss_pred cccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccCcccccCchHHHHHHHHHHHhchHHHHhhh
Confidence 344466899999999888777777778888888888887777765332 2222222111111111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 293 QYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMA 372 (510)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 372 (510)
-+..-+.-+.|...+.-. .|.+-|=.. +-...-....+-|...-.++.+..... .-++....+-.++-.+.-
T Consensus 262 IKLPGLef~NQrvEAAyR---KELVYgEDh-~drA~p~T~~ELf~nvr~NYfRLyfHY----~YFNiari~ylQ~dnif~ 333 (405)
T COG1133 262 IKLPGLEFRNQRVEAAYR---KELVYGEDH-ADRATPPTVRELFSNVRKNYFRLYFHY----MYFNIARILYLQVDNIFG 333 (405)
T ss_pred ccCCCcccccHHHHHHHH---hhhhccCCc-hhhcCCchHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 221111111111111111 111111110 111111122233333333333332222 122222222223334444
Q ss_pred HHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010471 373 VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLID 429 (510)
Q Consensus 373 l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~ 429 (510)
+.+-+-.+..|+++.|.+.-..-...++.++..-+.+.+..+.+-+.--+|+.+...
T Consensus 334 llil~PsivAgkitlG~~~QI~n~FgqVr~SfqylinsWTTIveL~SIyKRLraFE~ 390 (405)
T COG1133 334 LLILFPSIVAGKITLGLMTQITNVFGQVRGSFQYLINSWTTIVELLSIYKRLRAFEA 390 (405)
T ss_pred HHHHhhHHHhchhhHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444444567899999998888888888999999999999999999998999988854
No 418
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=96.23 E-value=0.0051 Score=54.73 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 010471 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
+++++|.||+||||+++.|+|--
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~ 107 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKK 107 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999998743
No 419
>PTZ00035 Rad51 protein; Provisional
Probab=96.23 E-value=0.0034 Score=64.42 Aligned_cols=30 Identities=20% Similarity=0.321 Sum_probs=27.1
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
=|++|+.+.|+|++|||||||+..++...+
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~q 143 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQ 143 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhc
Confidence 478999999999999999999998887665
No 420
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.22 E-value=0.0026 Score=63.09 Aligned_cols=35 Identities=34% Similarity=0.564 Sum_probs=30.7
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCce
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~ 508 (510)
-++.+..+.|.|+.||||||+++.|++..++....
T Consensus 123 ~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~ 157 (270)
T PF00437_consen 123 AVRGRGNILISGPTGSGKTTLLNALLEEIPPEDER 157 (270)
T ss_dssp CHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSE
T ss_pred ccccceEEEEECCCccccchHHHHHhhhccccccc
Confidence 45679999999999999999999999999887443
No 421
>PRK09866 hypothetical protein; Provisional
Probab=96.19 E-value=0.0039 Score=67.82 Aligned_cols=24 Identities=42% Similarity=0.481 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccC
Q 010471 480 VVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
++|+||+||+|||||+|.|.|..-
T Consensus 71 ~valvG~sgaGKSTLiNaL~G~~V 94 (741)
T PRK09866 71 VLAIVGTMKAGKSTTINAIVGTEV 94 (741)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcc
Confidence 689999999999999999999754
No 422
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.18 E-value=3.2 Score=47.11 Aligned_cols=45 Identities=7% Similarity=0.125 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHH
Q 010471 298 ASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEK 342 (510)
Q Consensus 298 ~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~ 342 (510)
..+...+......+......+.++-++.....+.+....++..+.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~ 361 (710)
T TIGR03796 317 RVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGY 361 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHH
Confidence 333333333333444445555666666666555554444444333
No 423
>PRK09087 hypothetical protein; Validated
Probab=96.16 E-value=0.0037 Score=60.48 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHh
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLL 499 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~ 499 (510)
++..+.|+|+||||||+|+++++
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~ 65 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWR 65 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 35569999999999999999998
No 424
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.13 E-value=0.0038 Score=63.49 Aligned_cols=29 Identities=31% Similarity=0.589 Sum_probs=26.3
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
-+++++.+.|+|++||||||+++.|++.+
T Consensus 144 ~v~~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 144 AVRAHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred HHHcCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 36789999999999999999999999874
No 425
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=96.11 E-value=0.0041 Score=64.11 Aligned_cols=28 Identities=46% Similarity=0.689 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDG 507 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~g~y~p~sG 507 (510)
.+|++|+|||||||++|.|-|+=+-++|
T Consensus 37 ~IaV~G~sGsGKSSfINalrGl~~~d~~ 64 (376)
T PF05049_consen 37 NIAVTGESGSGKSSFINALRGLGHEDEG 64 (376)
T ss_dssp EEEEEESTTSSHHHHHHHHTT--TTSTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCcC
Confidence 4799999999999999999887554443
No 426
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=96.03 E-value=0.0079 Score=62.01 Aligned_cols=50 Identities=30% Similarity=0.741 Sum_probs=44.2
Q ss_pred eEECCCCCCCCccccceEEeeCCC-----EEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471 456 SFHYPSRPTVPILNHVCLTIEANE-----VVAIVGLSGSGKSTFVNLLLRLYEPSDG 507 (510)
Q Consensus 456 sF~Y~~~~~~~vL~nisltI~~Ge-----~vAIVG~SGSGKSTL~kLL~g~y~p~sG 507 (510)
.++||+- ..-+.++.|.|+.|+ .+-..|++|-||||++++|+|..+|++|
T Consensus 342 ~y~Yp~m--~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~ 396 (592)
T KOG0063|consen 342 RYSYPKM--KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEG 396 (592)
T ss_pred eeccCcc--eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCcc
Confidence 3779864 568999999999996 5778899999999999999999999988
No 427
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=96.02 E-value=0.0048 Score=60.53 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
..-+++++|+||+||||+++.|+|-..
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~ 56 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERK 56 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCC
Confidence 335799999999999999999999653
No 428
>PLN02348 phosphoribulokinase
Probab=95.91 E-value=0.0053 Score=63.49 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 479 EVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
=.|||.|+|||||||+++-|.....
T Consensus 50 ~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 50 VVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3899999999999999998887663
No 429
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=95.86 E-value=3.7 Score=45.09 Aligned_cols=10 Identities=20% Similarity=0.311 Sum_probs=5.2
Q ss_pred ccccceEEee
Q 010471 467 ILNHVCLTIE 476 (510)
Q Consensus 467 vL~nisltI~ 476 (510)
.++|++|.-+
T Consensus 324 ~~~~v~f~y~ 333 (547)
T PRK10522 324 ELRNVTFAYQ 333 (547)
T ss_pred EEEEEEEEeC
Confidence 3555555554
No 430
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.83 E-value=0.0078 Score=70.01 Aligned_cols=40 Identities=28% Similarity=0.487 Sum_probs=37.1
Q ss_pred CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 464 ~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
...+|+|+|.-++||+.+-+.|+.|||||||+|.|+|-.+
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~ 166 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLD 166 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCc
Confidence 3469999999999999999999999999999999999765
No 431
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.81 E-value=4.5 Score=45.74 Aligned_cols=39 Identities=5% Similarity=0.066 Sum_probs=20.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 010471 121 SRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAV 159 (510)
Q Consensus 121 ~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i 159 (510)
..++++-+.+...++..++..+++-+..+..-.++..++
T Consensus 147 ~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl 185 (709)
T COG2274 147 PLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVL 185 (709)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444444555555565555555555555444444443
No 432
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=95.78 E-value=0.005 Score=73.45 Aligned_cols=38 Identities=32% Similarity=0.384 Sum_probs=29.4
Q ss_pred ceEEeeCCCEEEEEcCCCCcHHHHHHHHhc-ccCCCCce
Q 010471 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLR-LYEPSDGQ 508 (510)
Q Consensus 471 isltI~~Ge~vAIVG~SGSGKSTL~kLL~g-~y~p~sG~ 508 (510)
+++..+.++++||+|++|+|||||++.+.+ +-+..+|.
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~ 238 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSS 238 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeE
Confidence 456677889999999999999999999943 33333454
No 433
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.78 E-value=0.0061 Score=62.47 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p 504 (510)
+.+.++|+||.|||||||++.|++-+.-
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4578899999999999999999877643
No 434
>PLN02772 guanylate kinase
Probab=95.77 E-value=0.0082 Score=62.12 Aligned_cols=56 Identities=20% Similarity=0.421 Sum_probs=36.1
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEee------CCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIE------ANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~------~Ge~vAIVG~SGSGKSTL~kLL~g~y~p 504 (510)
.+|-|=.|.=.|-. +.+.+|..==...+ .++.+.|+||||+|||||++.|..-++.
T Consensus 100 ~~~w~l~~~t~~~~-~~~~~~~~eV~~~~~~~~~~~~k~iVlsGPSGvGKsTL~~~L~~~~p~ 161 (398)
T PLN02772 100 DSIWFLEVDTPFVR-EQKKLLGTEVVAWSKGVRGNAEKPIVISGPSGVGKGTLISMLMKEFPS 161 (398)
T ss_pred cceEEEEcCCHHHH-hhcccccceeeecccCCCCCCCcEEEEECCCCCCHHHHHHHHhhhccc
Confidence 35666566555542 22334433223333 4568999999999999999999876643
No 435
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.74 E-value=0.0075 Score=62.57 Aligned_cols=29 Identities=31% Similarity=0.395 Sum_probs=25.4
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
++++..+.|+|++||||||+++.|.+.+.
T Consensus 146 ~~~~GlilI~G~TGSGKTT~l~al~~~i~ 174 (372)
T TIGR02525 146 LPAAGLGLICGETGSGKSTLAASIYQHCG 174 (372)
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35667899999999999999999998884
No 436
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.70 E-value=0.0068 Score=62.76 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 478 NEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 478 Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
+.+++|||++||||||++..|++.+.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 47999999999999999999987654
No 437
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.66 E-value=0.0072 Score=60.14 Aligned_cols=33 Identities=24% Similarity=0.389 Sum_probs=26.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcccCCCCce
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~ 508 (510)
+++++++++|++|+||||.+.-|+..+......
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~ 102 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKS 102 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCE
Confidence 467899999999999999888777777544333
No 438
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=95.65 E-value=0.0097 Score=53.77 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=24.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
+.+..+++||.+|+||||+++.|.|-.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~ 124 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKL 124 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccc
Confidence 357889999999999999999999865
No 439
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=95.64 E-value=0.0081 Score=56.22 Aligned_cols=36 Identities=31% Similarity=0.410 Sum_probs=28.5
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
+++.+.=.++.+..+++||.+|+|||||++.|.+-.
T Consensus 116 L~~~l~~~l~~~~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 116 LINAIKKLAKKGGDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred HHHHHHHHhhcCCcEEEEcCCCCCHHHHHHHHHHhc
Confidence 444444445678899999999999999999998743
No 440
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.64 E-value=0.0079 Score=66.00 Aligned_cols=32 Identities=34% Similarity=0.422 Sum_probs=27.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG 507 (510)
++|+++.|+|.|||||||+++.|++.+....|
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g 421 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRG 421 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhhccC
Confidence 38999999999999999999999988776333
No 441
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.62 E-value=0.0079 Score=63.65 Aligned_cols=29 Identities=38% Similarity=0.564 Sum_probs=23.7
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
+.+|+++++|||+|+||||++.-|+..+.
T Consensus 218 ~~~~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 218 LKQGGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34688999999999999998877766543
No 442
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.62 E-value=0.0076 Score=61.25 Aligned_cols=28 Identities=32% Similarity=0.487 Sum_probs=24.8
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 475 IEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
+..+.-+.|.|++||||||+++.|++..
T Consensus 141 v~~~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 141 IDSRLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred HHcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4457788999999999999999999986
No 443
>PRK05439 pantothenate kinase; Provisional
Probab=95.56 E-value=0.0075 Score=60.92 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 479 EVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
-.|||.|++||||||+++.|..++.
T Consensus 87 ~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 87 FIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999987653
No 444
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=95.48 E-value=0.0099 Score=65.95 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=26.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG 507 (510)
..+.+.|+||+||||||+++++.++..+.+|
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~ 204 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKH 204 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccC
Confidence 3456999999999999999999998876544
No 445
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.48 E-value=0.0074 Score=61.37 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=27.9
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhc--ccCCCCc
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDG 507 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g--~y~p~sG 507 (510)
=+++|+.+.|.|++|||||||+.-++. ..+++.|
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~G 127 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQG 127 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcC
Confidence 588999999999999999999988876 3444443
No 446
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.48 E-value=0.011 Score=60.80 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=26.4
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 473 ltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
+.|-+||.+.|+|+.|+|||||++-|++-.
T Consensus 128 ~PiGkGQR~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 128 APIGKGQRGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred eecCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 567799999999999999999999877644
No 447
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=95.43 E-value=6.2 Score=44.70 Aligned_cols=13 Identities=0% Similarity=0.212 Sum_probs=7.4
Q ss_pred ccccceEEeeCCC
Q 010471 467 ILNHVCLTIEANE 479 (510)
Q Consensus 467 vL~nisltI~~Ge 479 (510)
.++|++|.-++++
T Consensus 457 ~~~~vsf~y~~~~ 469 (694)
T TIGR01846 457 TFENIRFRYAPDS 469 (694)
T ss_pred EEEEEEEEcCCCC
Confidence 4566666665443
No 448
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.42 E-value=0.012 Score=59.85 Aligned_cols=28 Identities=32% Similarity=0.512 Sum_probs=24.8
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
.+.+++.++|+|.+||||||+.+.|+..
T Consensus 129 ~~~~~~~I~l~G~~GsGKStvg~~La~~ 156 (309)
T PRK08154 129 RAARRRRIALIGLRGAGKSTLGRMLAAR 156 (309)
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999999743
No 449
>PLN02200 adenylate kinase family protein
Probab=95.41 E-value=0.011 Score=57.59 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
+-..+.|+|++||||||+++.|+..|
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 33678999999999999999998554
No 450
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.40 E-value=0.0097 Score=51.70 Aligned_cols=30 Identities=33% Similarity=0.531 Sum_probs=25.9
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
.+++|+++++-|+=||||||++|-+++...
T Consensus 11 ~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg 40 (123)
T PF02367_consen 11 ILKPGDVILLSGDLGAGKTTFVRGLARALG 40 (123)
T ss_dssp HHSS-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred hCCCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 358999999999999999999999988763
No 451
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.37 E-value=6.4 Score=44.55 Aligned_cols=9 Identities=22% Similarity=0.309 Sum_probs=4.6
Q ss_pred EEeeeEECC
Q 010471 452 FVNISFHYP 460 (510)
Q Consensus 452 f~nVsF~Y~ 460 (510)
++|++|.-+
T Consensus 481 L~~i~l~i~ 489 (694)
T TIGR03375 481 LDNVSLTIR 489 (694)
T ss_pred eeeeeEEEC
Confidence 455555543
No 452
>PRK10646 ADP-binding protein; Provisional
Probab=95.32 E-value=0.014 Score=52.57 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=28.6
Q ss_pred ceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (510)
Q Consensus 471 isltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p 504 (510)
+.-.+++|.++++.|.=|+||||++|-+++-...
T Consensus 21 la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 21 VAKACDGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred HHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4445679999999999999999999999876643
No 453
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.32 E-value=0.0091 Score=64.63 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=28.6
Q ss_pred cccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (510)
Q Consensus 468 L~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p 504 (510)
|++-...-++++...|.||+||||||.+++|++-+.+
T Consensus 35 l~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~ 71 (519)
T PF03215_consen 35 LEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGF 71 (519)
T ss_pred HHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4443344456678999999999999999999987644
No 454
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=95.29 E-value=0.0098 Score=62.87 Aligned_cols=28 Identities=39% Similarity=0.647 Sum_probs=24.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
||-=++|+|||+|+|||||++-|.|-|.
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~t 94 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFT 94 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHH
Confidence 4556899999999999999999988764
No 455
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.27 E-value=0.017 Score=62.15 Aligned_cols=31 Identities=23% Similarity=0.407 Sum_probs=24.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG 507 (510)
++..+.|+||+||||||+++.+++...+...
T Consensus 241 ~~GlilitGptGSGKTTtL~a~L~~l~~~~~ 271 (486)
T TIGR02533 241 PHGIILVTGPTGSGKTTTLYAALSRLNTPER 271 (486)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHhccCCCCC
Confidence 4568999999999999999966666654433
No 456
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=95.23 E-value=0.015 Score=68.72 Aligned_cols=29 Identities=34% Similarity=0.671 Sum_probs=25.2
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHh-cccC
Q 010471 475 IEANEVVAIVGLSGSGKSTFVNLLL-RLYE 503 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL~kLL~-g~y~ 503 (510)
+..+..++|+||||||||||++.|+ .||.
T Consensus 27 l~~~~l~~I~G~tGaGKStildai~~aLyg 56 (1047)
T PRK10246 27 FASNGLFAITGPTGAGKTTLLDAICLALYH 56 (1047)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4468999999999999999999888 6665
No 457
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.10 E-value=0.02 Score=53.45 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=25.1
Q ss_pred CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 499 (510)
Q Consensus 465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~ 499 (510)
..++++ =+++|+.+-|+|++|+||||++.=++
T Consensus 22 ~~li~g---~~~~g~l~~i~g~~g~GKT~~~~~l~ 53 (193)
T PF13481_consen 22 DWLIDG---LLPRGELTLIAGPPGSGKTTLALQLA 53 (193)
T ss_dssp -EEETT---EE-TTSEEEEEECSTSSHHHHHHHHH
T ss_pred ceeECC---cccCCeEEEEEeCCCCCHHHHHHHHH
Confidence 357776 47899999999999999999985443
No 458
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.09 E-value=0.011 Score=61.76 Aligned_cols=26 Identities=42% Similarity=0.570 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
++.+++++|++||||||++.-|+..+
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999998887654
No 459
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.07 E-value=0.014 Score=59.57 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=23.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471 479 EVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~g~y~p~ 505 (510)
-+++|.|++|||||||++-|...+...
T Consensus 57 ~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 57 LRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 589999999999999999888777643
No 460
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=94.99 E-value=8.2 Score=43.65 Aligned_cols=41 Identities=7% Similarity=-0.032 Sum_probs=19.8
Q ss_pred hHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 010471 116 VWIALSRMWNLIG-RDKWIVLVAVASLIVAAVSEITMPRILA 156 (510)
Q Consensus 116 ~~~~l~~l~~~~~-~~~~~l~~~~l~~i~~~l~~l~~P~~~~ 156 (510)
.+..++..++..+ .+...++..++..++.......+-.++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid 164 (686)
T TIGR03797 123 LRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIG 164 (686)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555343333 4445555555555555444444444443
No 461
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=94.96 E-value=7.3 Score=42.94 Aligned_cols=10 Identities=0% Similarity=0.092 Sum_probs=5.9
Q ss_pred EEEeeeEECC
Q 010471 451 QFVNISFHYP 460 (510)
Q Consensus 451 ~f~nVsF~Y~ 460 (510)
.++|++|.-+
T Consensus 355 iL~~inl~i~ 364 (576)
T TIGR02204 355 ALDGLNLTVR 364 (576)
T ss_pred cccceeEEec
Confidence 4566666654
No 462
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.96 E-value=0.022 Score=56.23 Aligned_cols=25 Identities=40% Similarity=0.574 Sum_probs=22.0
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHH
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLL 498 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL 498 (510)
=+|+|..+.|.|++||||||++.-+
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf 56 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQF 56 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHH
Confidence 3789999999999999999998543
No 463
>PRK13764 ATPase; Provisional
Probab=94.94 E-value=0.018 Score=63.19 Aligned_cols=33 Identities=39% Similarity=0.589 Sum_probs=28.0
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCce
Q 010471 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~ 508 (510)
.++++-+.|+|++||||||+++.|++++.. +|.
T Consensus 254 ~~~~~~ILIsG~TGSGKTTll~AL~~~i~~-~~r 286 (602)
T PRK13764 254 EERAEGILIAGAPGAGKSTFAQALAEFYAD-MGK 286 (602)
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHHHHhh-CCC
Confidence 466788999999999999999999999864 443
No 464
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.92 E-value=0.02 Score=57.05 Aligned_cols=32 Identities=25% Similarity=0.483 Sum_probs=25.6
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~ 505 (510)
-+..|+-+-||||+|||||++++-.++-.+++
T Consensus 29 l~~~~~pvLl~G~~GtGKT~li~~~l~~l~~~ 60 (272)
T PF12775_consen 29 LLSNGRPVLLVGPSGTGKTSLIQNFLSSLDSD 60 (272)
T ss_dssp HHHCTEEEEEESSTTSSHHHHHHHHHHCSTTC
T ss_pred HHHcCCcEEEECCCCCchhHHHHhhhccCCcc
Confidence 35688999999999999999996666555544
No 465
>PLN02199 shikimate kinase
Probab=94.89 E-value=0.0087 Score=59.65 Aligned_cols=48 Identities=21% Similarity=0.359 Sum_probs=39.7
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeC---CCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEA---NEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~---Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
.++-.++. +|++ . .|++.+-+|.+ |..+.|||..||||||+.+.|+..
T Consensus 75 ~le~~~~~-~~de---~-~Lk~~a~~i~~~l~~~~I~LIG~~GSGKSTVgr~LA~~ 125 (303)
T PLN02199 75 LLETGSVY-PFDE---D-ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKV 125 (303)
T ss_pred hcccCCCC-CCCH---H-HHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 46666777 6642 2 49999999988 999999999999999999999863
No 466
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=94.86 E-value=0.026 Score=57.62 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=31.0
Q ss_pred cceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (510)
Q Consensus 470 nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p 504 (510)
|.-+.+-+|++.+|.|++|+|||+|++.|++-.+.
T Consensus 149 D~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~~~ 183 (369)
T cd01134 149 DTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYSNS 183 (369)
T ss_pred hccccccCCCEEEEECCCCCChHHHHHHHHhCCCC
Confidence 55689999999999999999999999999986543
No 467
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.85 E-value=0.024 Score=56.12 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=30.7
Q ss_pred CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
+.|+++.--+++|+.+.|.|++|+||||++.-++.-+
T Consensus 18 ~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 18 PVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred ceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3577777789999999999999999999987665443
No 468
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=94.76 E-value=0.02 Score=54.29 Aligned_cols=33 Identities=39% Similarity=0.529 Sum_probs=24.2
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 499 (510)
Q Consensus 467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~ 499 (510)
..+++.+.+....-+.|+|.||||||++++.++
T Consensus 27 ~~~~v~~dl~~~~h~li~G~tgsGKS~~l~~ll 59 (205)
T PF01580_consen 27 RGDPVVLDLKKNPHLLIAGATGSGKSTLLRTLL 59 (205)
T ss_dssp TS-EEEEEGGGS-SEEEE--TTSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCceEEEEcCCCCCccHHHHHHH
Confidence 456788888888899999999999999997443
No 469
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.75 E-value=0.02 Score=58.18 Aligned_cols=38 Identities=37% Similarity=0.573 Sum_probs=33.6
Q ss_pred ccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC
Q 010471 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506 (510)
Q Consensus 469 ~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s 506 (510)
.-+-+-+..++.+-|+|+.||||||+++.++.+.+|+.
T Consensus 134 ayL~~~ie~~~siii~G~t~sGKTt~lnall~~Ip~~~ 171 (312)
T COG0630 134 AYLWLAIEARKSIIICGGTASGKTTLLNALLDFIPPEE 171 (312)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHhCCchh
Confidence 34556688999999999999999999999999999875
No 470
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=94.72 E-value=0.021 Score=56.49 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=28.6
Q ss_pred ceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 471 isltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
.=+.|-+||+.+|+|++|+|||||++.+.+-..
T Consensus 62 ~l~pig~GQr~~If~~~G~GKTtLa~~i~~~i~ 94 (274)
T cd01133 62 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNIA 94 (274)
T ss_pred ccCCcccCCEEEEecCCCCChhHHHHHHHHHHH
Confidence 447899999999999999999999998876543
No 471
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=94.70 E-value=8.5 Score=42.48 Aligned_cols=14 Identities=21% Similarity=0.223 Sum_probs=9.7
Q ss_pred CccccceEEeeCCC
Q 010471 466 PILNHVCLTIEANE 479 (510)
Q Consensus 466 ~vL~nisltI~~Ge 479 (510)
-.++|++|.-++++
T Consensus 342 i~~~~vsf~y~~~~ 355 (582)
T PRK11176 342 IEFRNVTFTYPGKE 355 (582)
T ss_pred EEEEEEEEecCCCC
Confidence 46788888876544
No 472
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=94.66 E-value=10 Score=43.14 Aligned_cols=44 Identities=7% Similarity=-0.144 Sum_probs=21.7
Q ss_pred chHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 010471 115 TVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEA 158 (510)
Q Consensus 115 ~~~~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~ 158 (510)
..++.++.+.+..+.....++..++..++..+....+..++...
T Consensus 148 ~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~ 191 (711)
T TIGR00958 148 LLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTL 191 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444334444445555555555555555555555444433
No 473
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.62 E-value=0.023 Score=60.41 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=28.3
Q ss_pred cceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 470 nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
|.=++|-+||+++|+|++|+|||||+.-+.+--
T Consensus 135 D~l~pigkGQR~gIfa~~G~GKt~Ll~~~~~~~ 167 (461)
T PRK12597 135 DLLCPIAKGGKTGLFGGAGVGKTVLMMELIFNI 167 (461)
T ss_pred cccCccccCCEEEeecCCCCChhHHHHHHHHHH
Confidence 345899999999999999999999998776543
No 474
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.62 E-value=0.027 Score=53.94 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=27.0
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
.++.. .....+..+.|.|++|+||||+++.+.+..
T Consensus 28 ~l~~~-~~~~~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 28 ALRQL-AAGKGDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred HHHHH-HhcCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34443 124667899999999999999999987654
No 475
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=94.52 E-value=0.042 Score=62.96 Aligned_cols=22 Identities=36% Similarity=0.696 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 010471 480 VVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
-++|+|+|||||||+++.|++.
T Consensus 428 ~~~I~G~tGsGKS~l~~~l~~~ 449 (789)
T PRK13853 428 MTAIFGPIGRGKTTLMTFILAM 449 (789)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998753
No 476
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=94.51 E-value=0.037 Score=49.39 Aligned_cols=34 Identities=35% Similarity=0.519 Sum_probs=28.9
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
+++|.+|.+-|+=||||||++|-+++-+.. +|+|
T Consensus 22 l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~-~~~V 55 (149)
T COG0802 22 LKAGDVVLLSGDLGAGKTTLVRGIAKGLGV-DGNV 55 (149)
T ss_pred CCCCCEEEEEcCCcCChHHHHHHHHHHcCC-CCcc
Confidence 479999999999999999999999887765 4443
No 477
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=94.49 E-value=0.027 Score=58.38 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=37.8
Q ss_pred ccEEEEeeeEECCCCCCCCccc------------cceEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471 448 GHVQFVNISFHYPSRPTVPILN------------HVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 500 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~------------nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g 500 (510)
....|+|++=-||.. +..|+ |.=+.|-+||...|||+.|+|||||++-+..
T Consensus 129 ~r~~f~~l~p~~p~~--R~~le~~~~~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian 191 (416)
T PRK09376 129 NRPLFENLTPLYPNE--RLRLETGNPEDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIAN 191 (416)
T ss_pred CCCCcccCCCCChhh--cccccCCCCcccceeeeeeecccccCceEEEeCCCCCChhHHHHHHHH
Confidence 457788888778742 22332 2234677999999999999999999988765
No 478
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=94.49 E-value=0.03 Score=58.73 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=27.6
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
.++++. +++++-+.|.||+||||||+++.+++...
T Consensus 170 ~~~~~G--l~~pkgvLL~GppGTGKT~LAkalA~~l~ 204 (398)
T PTZ00454 170 LYEQIG--IDPPRGVLLYGPPGTGKTMLAKAVAHHTT 204 (398)
T ss_pred HHHhcC--CCCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence 444443 45677899999999999999999987654
No 479
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.46 E-value=0.032 Score=56.40 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=27.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcccCCCC
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s 506 (510)
.+.-+-|.|-+|||||||++.|++|-+|++
T Consensus 172 ~r~NILisGGTGSGKTTlLNal~~~i~~~e 201 (355)
T COG4962 172 IRCNILISGGTGSGKTTLLNALSGFIDSDE 201 (355)
T ss_pred hceeEEEeCCCCCCHHHHHHHHHhcCCCcc
Confidence 345688999999999999999999999987
No 480
>PRK14974 cell division protein FtsY; Provisional
Probab=94.45 E-value=0.025 Score=57.95 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~ 505 (510)
++.+++++|++|+||||.+.-|+..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 35799999999999999888888776544
No 481
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=94.44 E-value=0.026 Score=59.87 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=27.1
Q ss_pred cccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 468 L~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
.+++. +++++-+.|.||+|+||||+++.+++...
T Consensus 209 ~~~~g--i~~p~gVLL~GPPGTGKT~LAraIA~el~ 242 (438)
T PTZ00361 209 YDDIG--IKPPKGVILYGPPGTGKTLLAKAVANETS 242 (438)
T ss_pred HHhcC--CCCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 44444 55677799999999999999999998643
No 482
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
Probab=94.35 E-value=0.026 Score=64.18 Aligned_cols=20 Identities=35% Similarity=0.723 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 010471 480 VVAIVGLSGSGKSTFVNLLL 499 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~ 499 (510)
-++|+|+||||||||+++|+
T Consensus 438 hT~I~G~tGaGKTvLl~~ll 457 (796)
T COG3451 438 HTLIIGPTGAGKTVLLSFLL 457 (796)
T ss_pred CeEEECCCCCCHHHHHHHHH
Confidence 79999999999999998876
No 483
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.34 E-value=0.026 Score=58.64 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=28.7
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCce
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~ 508 (510)
=+++|+.+.|.|++|+|||||+.-++.-+....|.
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~ 112 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGK 112 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCe
Confidence 48899999999999999999998887655544343
No 484
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=94.29 E-value=0.024 Score=63.10 Aligned_cols=30 Identities=33% Similarity=0.520 Sum_probs=27.3
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
+-.++|.+.|.|+|||||||..|+++++..
T Consensus 82 ~~~~~QsIiisGESGsGKTet~K~l~~yL~ 111 (653)
T cd01379 82 TYNQDQCIVISGESGSGKTESAHLLVQQLT 111 (653)
T ss_pred hcCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 557889999999999999999999999863
No 485
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.18 E-value=0.039 Score=53.12 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=27.1
Q ss_pred cccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 468 L~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
+++..-....++.+.|.|++|+|||+|++.+.+-.
T Consensus 32 l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 32 LRELAAGPVADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred HHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 44433334677889999999999999999998754
No 486
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=94.17 E-value=0.035 Score=59.17 Aligned_cols=27 Identities=37% Similarity=0.555 Sum_probs=24.4
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 475 IEANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
+++|-+++|||++|+|||||++.|++-
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~ 226 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQ 226 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCC
Confidence 357789999999999999999999985
No 487
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.16 E-value=0.03 Score=59.86 Aligned_cols=32 Identities=25% Similarity=0.261 Sum_probs=26.7
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~ 505 (510)
=+++|+.+.|.|++|+|||||+.-++.-....
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~ 121 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKN 121 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999999999998776544333
No 488
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=94.13 E-value=0.041 Score=57.17 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=26.0
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
.++++.++-| +-+.|.||+|+||||+++.+++-..
T Consensus 147 ~~~~~g~~~p--~gvLL~GppGtGKT~lakaia~~l~ 181 (364)
T TIGR01242 147 LFEEVGIEPP--KGVLLYGPPGTGKTLLAKAVAHETN 181 (364)
T ss_pred HHHhcCCCCC--ceEEEECCCCCCHHHHHHHHHHhCC
Confidence 3444444444 4499999999999999999987543
No 489
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.12 E-value=0.066 Score=60.08 Aligned_cols=26 Identities=38% Similarity=0.768 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHH-hcccCCC
Q 010471 480 VVAIVGLSGSGKSTFVNLL-LRLYEPS 505 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL-~g~y~p~ 505 (510)
++.|+|+|||||||+++.+ ..||...
T Consensus 30 ~~~i~G~Ng~GKttll~ai~~~LyG~~ 56 (650)
T TIGR03185 30 IILIGGLNGAGKTTLLDAIQLALYGKR 56 (650)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 8899999999999999887 5666543
No 490
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=94.02 E-value=0.035 Score=49.40 Aligned_cols=45 Identities=33% Similarity=0.429 Sum_probs=33.4
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
.|.+..-+..|.++ +..++ .+|=++-|.|-|||||||++-.|.+.
T Consensus 10 NI~wh~~~v~k~eR--q~l~~------qkGcviWiTGLSgSGKStlACaL~q~ 54 (207)
T KOG0635|consen 10 NITWHESSVTKEER--QKLLK------QKGCVIWITGLSGSGKSTLACALSQA 54 (207)
T ss_pred ceeeecCCccHHHH--HHHhc------CCCcEEEEeccCCCCchhHHHHHHHH
Confidence 46666656666544 33444 58999999999999999999777654
No 491
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.00 E-value=0.047 Score=53.10 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=22.4
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471 475 IEANEVVAIVGLSGSGKSTFVNLLLR 500 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL~kLL~g 500 (510)
.+.+..+.|.||+|||||+|++.++.
T Consensus 42 ~~~~~~l~l~Gp~G~GKThLl~a~~~ 67 (235)
T PRK08084 42 QEHSGYIYLWSREGAGRSHLLHAACA 67 (235)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 45567899999999999999998774
No 492
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.00 E-value=0.028 Score=60.69 Aligned_cols=52 Identities=19% Similarity=0.263 Sum_probs=38.7
Q ss_pred ccEEEEeeeEECCCCCCCCccc-----------cceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 448 GHVQFVNISFHYPSRPTVPILN-----------HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~-----------nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
....|++++=-||.. +..|+ |.=+.|-+||...|||++|+|||||++-|+.-
T Consensus 377 ~r~~F~~Ltp~~P~~--R~~le~e~~~~giRvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~ 439 (672)
T PRK12678 377 KRPEFGKLTPLYPNE--RLRLETEPKKLTTRVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANA 439 (672)
T ss_pred cCCCcccCCCCChHH--hcccccCcccccceeeeeecccccCCEeEEeCCCCCCHHHHHHHHHHH
Confidence 456777777777742 12222 34467889999999999999999999988773
No 493
>PRK06526 transposase; Provisional
Probab=93.96 E-value=0.04 Score=54.26 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=22.6
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471 475 IEANEVVAIVGLSGSGKSTFVNLLLR 500 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL~kLL~g 500 (510)
++.++-+.|+||+|+|||+|+.-|..
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~ 120 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHH
Confidence 36788999999999999999987753
No 494
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=93.95 E-value=0.044 Score=55.18 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccc
Q 010471 479 EVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
-++++||.+|+||||+++.|+|-.
T Consensus 39 ~rIllvGktGVGKSSliNsIlG~~ 62 (313)
T TIGR00991 39 LTILVMGKGGVGKSSTVNSIIGER 62 (313)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999843
No 495
>PF13245 AAA_19: Part of AAA domain
Probab=93.93 E-value=0.047 Score=43.20 Aligned_cols=26 Identities=23% Similarity=0.471 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCcHH-HHHHHHhccc
Q 010471 477 ANEVVAIVGLSGSGKS-TFVNLLLRLY 502 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKS-TL~kLL~g~y 502 (510)
++..+.|.|+.||||| |+++++..++
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4556667999999999 7888888877
No 496
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.88 E-value=0.038 Score=54.58 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccc
Q 010471 479 EVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
--+.+.||+|+||||+++++++.+
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999998753
No 497
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.88 E-value=13 Score=41.21 Aligned_cols=12 Identities=17% Similarity=0.307 Sum_probs=8.8
Q ss_pred EEEEeeeEECCC
Q 010471 450 VQFVNISFHYPS 461 (510)
Q Consensus 450 I~f~nVsF~Y~~ 461 (510)
-.++|++|.-+.
T Consensus 364 ~vL~~i~l~i~~ 375 (588)
T PRK11174 364 TLAGPLNFTLPA 375 (588)
T ss_pred eeeeeeEEEEcC
Confidence 358899998763
No 498
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=93.83 E-value=0.064 Score=61.69 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=26.1
Q ss_pred ceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (510)
Q Consensus 471 isltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p 504 (510)
+|+.....--++|+|+|||||||+++.|+..+.-
T Consensus 449 ~n~h~~d~g~~~i~G~tGsGKS~l~~~l~~~~~~ 482 (818)
T PRK13830 449 LNLHVDDVGHTLIFGPTGSGKSTLLALIAAQFRR 482 (818)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 3444444446899999999999999998877553
No 499
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.82 E-value=0.044 Score=54.25 Aligned_cols=33 Identities=15% Similarity=0.317 Sum_probs=27.6
Q ss_pred cceEEeeCCCEEEEEcCCCCcHHHH-HHHHhccc
Q 010471 470 HVCLTIEANEVVAIVGLSGSGKSTF-VNLLLRLY 502 (510)
Q Consensus 470 nisltI~~Ge~vAIVG~SGSGKSTL-~kLL~g~y 502 (510)
|.-+.|-+||+++|+|++|+||||| ++.+.+-.
T Consensus 61 D~l~pigrGQr~~Ifg~~g~GKt~L~l~~i~~~~ 94 (274)
T cd01132 61 DAMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK 94 (274)
T ss_pred eccCCcccCCEEEeeCCCCCCccHHHHHHHHHhc
Confidence 4457899999999999999999999 57776543
No 500
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=93.81 E-value=0.049 Score=55.30 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.0
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHH
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLL 498 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL 498 (510)
=+|+|..+-|.||+|||||||+--+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~ 75 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHA 75 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHH
Confidence 4899999999999999999996443
Done!