Query 010471
Match_columns 510
No_of_seqs 224 out of 1981
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 07:31:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010471.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010471hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qf4_B Uncharacterized ABC tra 100.0 1E-51 3.5E-56 452.0 48.6 392 116-510 21-413 (598)
2 2yl4_A ATP-binding cassette SU 100.0 4.5E-51 1.6E-55 447.0 53.0 394 117-510 4-402 (595)
3 3qf4_A ABC transporter, ATP-bi 100.0 1.5E-51 5.2E-56 449.5 48.7 389 121-510 12-401 (587)
4 4f4c_A Multidrug resistance pr 100.0 3.5E-51 1.2E-55 481.8 53.0 392 119-510 61-476 (1321)
5 3b5x_A Lipid A export ATP-bind 100.0 3.3E-50 1.1E-54 439.1 56.1 391 117-510 10-401 (582)
6 4a82_A Cystic fibrosis transme 100.0 1.6E-51 5.3E-56 449.1 43.8 390 120-510 2-399 (578)
7 3b60_A Lipid A export ATP-bind 100.0 2.3E-50 7.9E-55 440.3 50.9 391 117-510 10-401 (582)
8 3g5u_A MCG1178, multidrug resi 100.0 3.5E-49 1.2E-53 463.8 42.9 392 119-510 34-448 (1284)
9 4f4c_A Multidrug resistance pr 100.0 3.6E-47 1.2E-51 447.8 35.2 391 120-510 740-1137(1321)
10 3g5u_A MCG1178, multidrug resi 100.0 2.1E-43 7.2E-48 414.8 37.6 391 120-510 693-1091(1284)
11 3nh6_A ATP-binding cassette SU 99.8 1.8E-21 6.2E-26 194.6 3.8 98 411-510 15-112 (306)
12 2v9p_A Replication protein E1; 99.7 4E-19 1.4E-23 177.2 -5.8 118 382-509 37-154 (305)
13 2ff7_A Alpha-hemolysin translo 99.7 5.4E-17 1.8E-21 157.8 6.7 62 448-510 6-67 (247)
14 2ixe_A Antigen peptide transpo 99.7 9.5E-17 3.3E-21 158.1 7.9 64 447-510 14-77 (271)
15 2pze_A Cystic fibrosis transme 99.6 1.2E-16 4E-21 153.7 6.9 62 448-510 5-66 (229)
16 3tif_A Uncharacterized ABC tra 99.6 6.5E-17 2.2E-21 156.0 4.8 61 450-510 2-63 (235)
17 3gfo_A Cobalt import ATP-bindi 99.6 1.4E-16 4.9E-21 156.9 6.7 60 449-510 7-66 (275)
18 2cbz_A Multidrug resistance-as 99.6 1.3E-16 4.6E-21 154.0 5.8 61 449-510 3-63 (237)
19 1mv5_A LMRA, multidrug resista 99.6 1.9E-16 6.4E-21 153.6 6.8 59 450-510 2-60 (243)
20 3tui_C Methionine import ATP-b 99.6 2.6E-16 8.7E-21 160.3 5.6 64 447-510 22-86 (366)
21 2pcj_A ABC transporter, lipopr 99.6 3.2E-16 1.1E-20 150.1 5.8 59 449-510 4-62 (224)
22 2ghi_A Transport protein; mult 99.6 5.1E-16 1.7E-20 152.0 6.9 62 448-510 16-77 (260)
23 1ji0_A ABC transporter; ATP bi 99.6 3.9E-16 1.3E-20 151.1 5.6 59 449-510 6-64 (240)
24 4g1u_C Hemin import ATP-bindin 99.6 5.2E-16 1.8E-20 152.4 6.4 59 449-510 11-69 (266)
25 2ihy_A ABC transporter, ATP-bi 99.6 5.1E-16 1.7E-20 153.5 6.1 66 442-510 14-79 (279)
26 1sgw_A Putative ABC transporte 99.6 6.3E-16 2.1E-20 146.8 6.3 59 448-510 9-67 (214)
27 2olj_A Amino acid ABC transpor 99.6 5E-16 1.7E-20 152.2 5.5 59 449-510 24-82 (263)
28 1g6h_A High-affinity branched- 99.6 6.1E-16 2.1E-20 151.3 5.5 59 449-510 7-65 (257)
29 1vpl_A ABC transporter, ATP-bi 99.6 6.5E-16 2.2E-20 150.8 5.6 61 447-510 13-73 (256)
30 1b0u_A Histidine permease; ABC 99.6 6.5E-16 2.2E-20 151.4 5.5 59 449-510 6-64 (262)
31 2yz2_A Putative ABC transporte 99.6 1.2E-15 4.2E-20 149.9 6.2 61 450-510 3-65 (266)
32 2nq2_C Hypothetical ABC transp 99.6 1.5E-15 5E-20 148.1 6.4 60 449-510 4-63 (253)
33 2bbs_A Cystic fibrosis transme 99.6 8.2E-16 2.8E-20 152.7 4.2 80 423-510 17-96 (290)
34 2d2e_A SUFC protein; ABC-ATPas 99.6 1.2E-15 4.1E-20 148.6 4.7 59 449-510 3-63 (250)
35 3fvq_A Fe(3+) IONS import ATP- 99.5 1.9E-15 6.6E-20 153.7 5.3 59 449-510 4-62 (359)
36 1z47_A CYSA, putative ABC-tran 99.5 3.2E-15 1.1E-19 152.1 6.7 61 448-510 13-73 (355)
37 3rlf_A Maltose/maltodextrin im 99.5 2.3E-15 7.8E-20 154.2 5.5 59 449-510 3-61 (381)
38 2zu0_C Probable ATP-dependent 99.5 2E-15 6.8E-20 148.4 4.3 60 448-510 19-80 (267)
39 3gd7_A Fusion complex of cysti 99.5 4.5E-15 1.5E-19 153.0 6.7 63 446-510 16-78 (390)
40 2it1_A 362AA long hypothetical 99.5 5.7E-15 1.9E-19 150.7 6.3 59 449-510 3-61 (362)
41 2yyz_A Sugar ABC transporter, 99.5 5.4E-15 1.8E-19 150.7 5.5 59 449-510 3-61 (359)
42 1v43_A Sugar-binding transport 99.5 6.7E-15 2.3E-19 150.7 5.5 59 449-510 11-69 (372)
43 1g29_1 MALK, maltose transport 99.5 7.5E-15 2.6E-19 150.6 5.6 59 449-510 3-61 (372)
44 1oxx_K GLCV, glucose, ABC tran 99.5 5.1E-15 1.7E-19 150.9 3.8 59 449-510 3-63 (353)
45 2pjz_A Hypothetical protein ST 99.5 1.2E-14 4.3E-19 142.2 4.7 59 450-510 2-61 (263)
46 2gza_A Type IV secretion syste 99.5 1.2E-17 4.1E-22 171.4 -18.3 134 372-510 51-207 (361)
47 2iw3_A Elongation factor 3A; a 99.4 2.7E-13 9.1E-18 153.2 6.0 61 449-510 671-731 (986)
48 2pt7_A CAG-ALFA; ATPase, prote 99.4 2.3E-16 7.9E-21 159.7 -17.6 118 384-510 75-203 (330)
49 1htw_A HI0065; nucleotide-bind 99.2 1.7E-13 6E-18 123.7 -4.5 57 450-510 8-64 (158)
50 1yqt_A RNAse L inhibitor; ATP- 99.2 5E-12 1.7E-16 136.1 5.3 57 450-509 21-78 (538)
51 3bk7_A ABC transporter ATP-bin 99.2 9.3E-12 3.2E-16 135.5 5.3 54 453-509 95-148 (607)
52 1yqt_A RNAse L inhibitor; ATP- 99.2 1.9E-11 6.4E-16 131.6 5.9 58 449-510 287-344 (538)
53 3bk7_A ABC transporter ATP-bin 99.1 2.9E-11 9.9E-16 131.6 6.8 58 449-510 357-414 (607)
54 3ozx_A RNAse L inhibitor; ATP 99.1 3.8E-11 1.3E-15 129.0 5.8 59 448-510 268-326 (538)
55 3aez_A Pantothenate kinase; tr 99.1 1.6E-12 5.5E-17 130.4 -7.1 81 419-507 16-119 (312)
56 2dpy_A FLII, flagellum-specifi 99.1 1.3E-11 4.5E-16 129.3 -0.5 59 448-509 130-188 (438)
57 3j16_B RLI1P; ribosome recycli 99.0 8.6E-11 2.9E-15 127.7 4.8 53 454-509 82-134 (608)
58 3euj_A Chromosome partition pr 99.0 2.6E-10 9E-15 120.1 5.0 54 451-510 8-61 (483)
59 2obl_A ESCN; ATPase, hydrolase 98.9 7.1E-11 2.4E-15 120.0 -0.2 59 448-509 44-102 (347)
60 3j16_B RLI1P; ribosome recycli 98.9 2.1E-10 7.3E-15 124.7 3.4 56 452-509 349-409 (608)
61 2npi_A Protein CLP1; CLP1-PCF1 98.9 9.5E-12 3.3E-16 131.1 -7.0 53 448-509 117-171 (460)
62 1sq5_A Pantothenate kinase; P- 98.9 1.8E-11 6E-16 122.7 -4.9 59 446-509 34-113 (308)
63 2iw3_A Elongation factor 3A; a 98.9 1.5E-09 5E-14 122.9 8.9 50 448-500 434-483 (986)
64 3ux8_A Excinuclease ABC, A sub 98.9 6E-10 2.1E-14 123.2 4.4 45 465-509 31-96 (670)
65 1tq4_A IIGP1, interferon-induc 98.9 2.3E-10 7.8E-15 118.6 0.0 46 465-510 36-101 (413)
66 3nwj_A ATSK2; P loop, shikimat 98.8 3.3E-10 1.1E-14 109.9 -1.0 52 448-501 16-71 (250)
67 2qm8_A GTPase/ATPase; G protei 98.8 1.2E-10 4E-15 118.1 -6.5 58 449-509 29-86 (337)
68 3b9q_A Chloroplast SRP recepto 98.7 2.1E-09 7.2E-14 107.1 1.9 43 468-510 90-132 (302)
69 3ice_A Transcription terminati 98.7 1.7E-09 5.9E-14 109.7 0.7 75 421-502 110-198 (422)
70 1tf7_A KAIC; homohexamer, hexa 98.7 2.8E-09 9.7E-14 114.4 1.3 46 465-510 25-73 (525)
71 1lw7_A Transcriptional regulat 98.7 3E-09 1E-13 108.9 0.5 43 467-509 157-205 (365)
72 2qag_B Septin-6, protein NEDD5 98.6 3.1E-09 1.1E-13 110.2 0.2 50 448-502 15-66 (427)
73 2og2_A Putative signal recogni 98.6 4.9E-09 1.7E-13 106.7 1.4 42 469-510 148-189 (359)
74 2yhs_A FTSY, cell division pro 98.6 5.1E-09 1.7E-13 110.0 1.5 43 468-510 283-325 (503)
75 2qag_C Septin-7; cell cycle, c 98.6 1.9E-08 6.6E-13 104.4 4.5 52 447-507 9-60 (418)
76 3ux8_A Excinuclease ABC, A sub 98.6 1.3E-08 4.4E-13 112.5 3.0 35 465-499 335-369 (670)
77 2ewv_A Twitching motility prot 98.6 7.2E-09 2.5E-13 106.3 0.5 42 466-509 126-168 (372)
78 3jvv_A Twitching mobility prot 98.5 1.6E-08 5.4E-13 103.1 1.9 56 453-509 92-155 (356)
79 2ehv_A Hypothetical protein PH 98.5 2.2E-08 7.6E-13 96.0 2.2 55 449-508 6-62 (251)
80 2vf7_A UVRA2, excinuclease ABC 98.5 2E-08 6.8E-13 112.5 2.1 47 448-502 501-548 (842)
81 1p9r_A General secretion pathw 98.5 4.5E-09 1.5E-13 109.3 -3.6 56 450-510 144-199 (418)
82 3szr_A Interferon-induced GTP- 98.5 7.7E-09 2.6E-13 112.8 -1.9 58 449-510 10-78 (608)
83 1cr0_A DNA primase/helicase; R 98.5 2E-08 6.7E-13 99.6 1.2 44 466-509 23-67 (296)
84 1rj9_A FTSY, signal recognitio 98.5 3.9E-08 1.3E-12 98.0 2.8 34 477-510 101-134 (304)
85 2oap_1 GSPE-2, type II secreti 98.5 1.9E-08 6.4E-13 107.3 0.1 45 465-509 247-291 (511)
86 1u0l_A Probable GTPase ENGC; p 98.4 6.5E-08 2.2E-12 96.3 2.5 38 473-510 164-201 (301)
87 2o8b_B DNA mismatch repair pro 98.4 1.9E-07 6.4E-12 107.1 5.4 53 448-503 749-813 (1022)
88 1ewq_A DNA mismatch repair pro 98.4 1.6E-07 5.5E-12 104.5 4.7 58 447-509 548-608 (765)
89 2rcn_A Probable GTPase ENGC; Y 98.3 1E-07 3.6E-12 96.7 2.1 44 466-510 204-248 (358)
90 1t9h_A YLOQ, probable GTPase E 98.3 5.8E-08 2E-12 96.7 -0.1 38 473-510 168-205 (307)
91 3e70_C DPA, signal recognition 98.3 1.2E-07 4.2E-12 95.4 1.8 37 474-510 125-161 (328)
92 2ygr_A Uvrabc system protein A 98.3 4.2E-07 1.4E-11 102.6 5.4 44 448-499 646-689 (993)
93 2r6f_A Excinuclease ABC subuni 98.3 4E-07 1.4E-11 102.4 4.5 43 449-499 629-671 (972)
94 2yv5_A YJEQ protein; hydrolase 98.2 3.9E-07 1.3E-11 90.7 2.9 37 473-510 160-196 (302)
95 3pih_A Uvrabc system protein A 98.2 3.4E-07 1.2E-11 103.4 2.8 30 466-495 598-627 (916)
96 4aby_A DNA repair protein RECN 98.2 3.3E-07 1.1E-11 95.0 2.3 37 467-504 50-86 (415)
97 3thx_A DNA mismatch repair pro 98.2 2.5E-06 8.5E-11 96.7 8.2 61 448-508 630-700 (934)
98 1svm_A Large T antigen; AAA+ f 98.1 6.1E-07 2.1E-11 91.9 1.2 37 466-502 157-193 (377)
99 3tqc_A Pantothenate kinase; bi 98.1 5.7E-07 1.9E-11 90.1 0.3 53 454-509 65-125 (321)
100 1ls1_A Signal recognition part 98.0 4.8E-07 1.6E-11 89.8 -0.6 54 449-509 76-129 (295)
101 3ec2_A DNA replication protein 98.0 7.1E-07 2.4E-11 81.4 0.2 37 472-508 32-68 (180)
102 2x8a_A Nuclear valosin-contain 98.0 9.1E-07 3.1E-11 86.8 0.7 37 466-504 34-70 (274)
103 1zu4_A FTSY; GTPase, signal re 98.0 1.1E-06 3.7E-11 88.2 1.2 43 467-509 94-136 (320)
104 4eun_A Thermoresistant glucoki 98.0 2.5E-06 8.4E-11 79.3 3.0 31 472-502 23-53 (200)
105 3t34_A Dynamin-related protein 98.0 1.9E-06 6.4E-11 87.8 1.8 42 465-509 24-67 (360)
106 1wb9_A DNA mismatch repair pro 98.0 3.2E-06 1.1E-10 94.6 3.8 52 448-502 576-631 (800)
107 1pzn_A RAD51, DNA repair and r 97.9 1.5E-06 5E-11 88.3 0.7 48 453-506 111-161 (349)
108 2kjq_A DNAA-related protein; s 97.9 2.3E-06 7.9E-11 75.9 1.9 35 467-507 30-64 (149)
109 1udx_A The GTP-binding protein 97.9 2.7E-06 9.4E-11 88.2 2.6 34 468-501 147-180 (416)
110 3thx_B DNA mismatch repair pro 97.9 2.7E-06 9.2E-11 96.2 2.6 51 448-500 639-695 (918)
111 1in4_A RUVB, holliday junction 97.9 1.9E-07 6.4E-12 94.3 -6.6 58 449-509 18-86 (334)
112 1vma_A Cell division protein F 97.9 2.8E-06 9.6E-11 84.5 1.4 39 471-509 97-135 (306)
113 1ixz_A ATP-dependent metallopr 97.8 3.6E-06 1.2E-10 81.1 1.6 50 449-503 25-74 (254)
114 3cr8_A Sulfate adenylyltranfer 97.8 3.4E-06 1.2E-10 90.5 1.4 36 474-509 365-401 (552)
115 1iy2_A ATP-dependent metallopr 97.8 4.3E-06 1.5E-10 81.8 1.6 49 450-503 50-98 (278)
116 1tf7_A KAIC; homohexamer, hexa 97.8 2.8E-06 9.6E-11 91.0 -0.9 53 450-508 258-310 (525)
117 1odf_A YGR205W, hypothetical 3 97.7 9.4E-06 3.2E-10 80.1 1.7 29 477-505 30-58 (290)
118 2p67_A LAO/AO transport system 97.6 8E-06 2.7E-10 82.6 -0.2 44 466-509 44-87 (341)
119 2px0_A Flagellar biosynthesis 97.6 1.8E-05 6.3E-10 78.3 2.2 32 476-507 103-134 (296)
120 2vf7_A UVRA2, excinuclease ABC 97.6 3.3E-05 1.1E-09 86.6 4.4 40 448-495 14-53 (842)
121 2r6f_A Excinuclease ABC subuni 97.5 4.8E-05 1.6E-09 85.7 4.1 40 448-495 22-61 (972)
122 2ygr_A Uvrabc system protein A 97.5 4.9E-05 1.7E-09 86.0 4.1 40 448-495 24-63 (993)
123 1oix_A RAS-related protein RAB 97.5 4.5E-05 1.5E-09 70.0 2.8 25 480-504 31-55 (191)
124 1nlf_A Regulatory protein REPA 97.5 5.1E-05 1.8E-09 74.1 3.4 30 474-503 26-55 (279)
125 3lda_A DNA repair protein RAD5 97.4 5.7E-05 1.9E-09 77.9 3.7 34 474-507 174-209 (400)
126 3k1j_A LON protease, ATP-depen 97.4 2.1E-05 7.1E-10 85.7 0.2 42 465-506 47-88 (604)
127 2ffh_A Protein (FFH); SRP54, s 97.4 5.8E-05 2E-09 78.3 2.4 54 449-509 76-129 (425)
128 2www_A Methylmalonic aciduria 97.3 5.9E-05 2E-09 76.4 2.2 34 476-509 72-105 (349)
129 1f2t_A RAD50 ABC-ATPase; DNA d 97.3 0.00013 4.4E-09 64.5 3.9 34 469-503 15-49 (149)
130 3m6a_A ATP-dependent protease 97.3 4.5E-05 1.5E-09 81.9 0.8 57 449-509 83-139 (543)
131 2qag_A Septin-2, protein NEDD5 97.2 2.8E-05 9.4E-10 79.2 -1.6 52 446-506 14-65 (361)
132 1j8m_F SRP54, signal recogniti 97.2 5.4E-05 1.8E-09 74.9 0.2 55 449-509 74-129 (297)
133 2dhr_A FTSH; AAA+ protein, hex 97.1 0.00015 5.1E-09 76.8 2.5 49 450-503 41-89 (499)
134 1sxj_E Activator 1 40 kDa subu 97.1 0.00022 7.6E-09 71.7 3.1 30 480-509 38-68 (354)
135 2p5t_B PEZT; postsegregational 96.9 0.0002 6.9E-09 68.9 1.3 30 474-503 28-57 (253)
136 1lv7_A FTSH; alpha/beta domain 96.9 0.0003 1E-08 67.6 2.4 35 467-503 36-70 (257)
137 3hr8_A Protein RECA; alpha and 96.9 0.00029 1E-08 71.3 2.2 36 474-509 57-92 (356)
138 1sxj_C Activator 1 40 kDa subu 96.7 0.00012 4.1E-09 73.6 -2.1 43 465-507 31-75 (340)
139 4ag6_A VIRB4 ATPase, type IV s 96.7 0.00062 2.1E-08 69.8 2.7 44 465-509 20-66 (392)
140 1mky_A Probable GTP-binding pr 96.7 0.00097 3.3E-08 69.5 4.0 24 479-502 181-204 (439)
141 3lxx_A GTPase IMAP family memb 96.6 0.0011 3.8E-08 62.8 4.1 28 480-507 31-58 (239)
142 4ad8_A DNA repair protein RECN 96.6 0.0004 1.4E-08 74.0 0.9 34 467-501 50-83 (517)
143 1ypw_A Transitional endoplasmi 96.6 0.00078 2.7E-08 75.7 3.0 32 473-504 233-264 (806)
144 4a82_A Cystic fibrosis transme 96.6 0.75 2.5E-05 49.3 26.2 10 468-477 342-351 (578)
145 1ko7_A HPR kinase/phosphatase; 96.5 0.0013 4.4E-08 65.2 3.5 34 466-500 133-166 (314)
146 3qf4_A ABC transporter, ATP-bi 96.5 1.3 4.3E-05 47.7 29.6 14 449-462 356-369 (587)
147 2ius_A DNA translocase FTSK; n 96.4 0.0013 4.4E-08 69.6 3.3 40 469-508 158-199 (512)
148 2qtf_A Protein HFLX, GTP-bindi 96.4 0.0013 4.4E-08 66.9 2.9 24 480-503 181-204 (364)
149 1gvn_B Zeta; postsegregational 96.4 0.0014 4.8E-08 64.3 3.0 26 477-502 32-57 (287)
150 2zr9_A Protein RECA, recombina 96.3 0.0014 4.8E-08 66.2 2.2 32 474-505 57-88 (349)
151 2ce7_A Cell division protein F 96.2 0.0013 4.4E-08 69.2 1.4 35 466-502 39-73 (476)
152 3kl4_A SRP54, signal recogniti 96.1 0.0013 4.3E-08 68.3 1.3 33 477-509 96-128 (433)
153 3cf0_A Transitional endoplasmi 96.0 0.0023 7.8E-08 63.1 2.4 31 473-503 44-74 (301)
154 3tlx_A Adenylate kinase 2; str 96.0 0.0032 1.1E-07 60.0 3.2 26 477-502 28-53 (243)
155 3llm_A ATP-dependent RNA helic 96.0 0.0026 8.9E-08 60.2 2.5 26 474-499 72-97 (235)
156 2ged_A SR-beta, signal recogni 96.0 0.0035 1.2E-07 56.7 3.1 25 478-502 48-72 (193)
157 2f6r_A COA synthase, bifunctio 95.9 0.0032 1.1E-07 61.5 2.9 22 479-500 76-97 (281)
158 2r6a_A DNAB helicase, replicat 95.9 0.0012 4.3E-08 69.0 -0.0 42 466-507 191-232 (454)
159 3a8t_A Adenylate isopentenyltr 95.9 0.0042 1.4E-07 62.1 3.6 28 476-503 38-65 (339)
160 2qmh_A HPR kinase/phosphorylas 95.9 0.0053 1.8E-07 56.7 4.0 33 467-500 24-56 (205)
161 3l0o_A Transcription terminati 95.8 0.0031 1.1E-07 64.0 2.1 53 447-501 135-198 (427)
162 4fcw_A Chaperone protein CLPB; 95.7 0.0034 1.2E-07 61.6 2.2 30 478-507 47-76 (311)
163 1gwn_A RHO-related GTP-binding 95.6 0.0071 2.4E-07 55.8 3.6 23 479-501 29-51 (205)
164 3bos_A Putative DNA replicatio 95.5 0.0074 2.5E-07 56.3 3.5 27 477-503 51-77 (242)
165 3zvl_A Bifunctional polynucleo 95.5 0.0075 2.5E-07 62.3 3.7 27 475-501 255-281 (416)
166 2z43_A DNA repair and recombin 95.5 0.0079 2.7E-07 59.9 3.8 28 474-501 103-130 (324)
167 1v5w_A DMC1, meiotic recombina 95.4 0.0069 2.4E-07 60.9 3.3 28 474-501 118-145 (343)
168 1sky_E F1-ATPase, F1-ATP synth 95.4 0.0041 1.4E-07 64.9 1.6 36 467-503 141-176 (473)
169 4dhe_A Probable GTP-binding pr 95.4 0.0044 1.5E-07 57.5 1.5 25 478-502 29-53 (223)
170 1jbk_A CLPB protein; beta barr 95.4 0.0089 3E-07 53.3 3.4 27 476-502 41-67 (195)
171 2qu8_A Putative nucleolar GTP- 95.3 0.0083 2.9E-07 56.1 3.3 23 479-501 30-52 (228)
172 3b9p_A CG5977-PA, isoform A; A 95.3 0.0092 3.2E-07 58.2 3.5 27 476-502 52-78 (297)
173 2wsm_A Hydrogenase expression/ 95.2 0.0086 2.9E-07 55.5 2.9 23 479-501 31-53 (221)
174 2atv_A RERG, RAS-like estrogen 95.2 0.01 3.4E-07 53.9 3.1 23 479-501 29-51 (196)
175 2qby_A CDC6 homolog 1, cell di 95.1 0.0048 1.6E-07 62.0 1.0 29 476-504 43-71 (386)
176 2w58_A DNAI, primosome compone 95.1 0.01 3.5E-07 54.3 3.2 27 479-505 55-81 (202)
177 2j1l_A RHO-related GTP-binding 95.1 0.01 3.6E-07 54.8 3.1 21 480-500 36-56 (214)
178 2e87_A Hypothetical protein PH 95.1 0.011 3.7E-07 59.7 3.4 25 478-502 167-191 (357)
179 2p5s_A RAS and EF-hand domain 95.1 0.011 3.6E-07 53.9 3.1 24 477-500 27-50 (199)
180 3umf_A Adenylate kinase; rossm 95.1 0.0073 2.5E-07 56.7 1.9 29 475-503 26-54 (217)
181 3def_A T7I23.11 protein; chlor 95.0 0.011 3.6E-07 56.9 3.1 22 480-501 38-59 (262)
182 3cnl_A YLQF, putative uncharac 95.0 0.012 4.1E-07 56.8 3.4 29 479-507 100-128 (262)
183 1fnn_A CDC6P, cell division co 95.0 0.011 3.8E-07 59.6 3.2 29 477-505 41-71 (389)
184 1h65_A Chloroplast outer envel 95.0 0.011 3.7E-07 57.1 3.1 22 480-501 41-62 (270)
185 2g3y_A GTP-binding protein GEM 95.0 0.013 4.4E-07 54.6 3.3 22 480-501 39-60 (211)
186 2p65_A Hypothetical protein PF 94.9 0.011 3.8E-07 52.6 2.6 27 476-502 41-67 (187)
187 2b6h_A ADP-ribosylation factor 94.9 0.012 4.1E-07 53.4 2.9 32 467-500 20-51 (192)
188 3n70_A Transport activator; si 94.9 0.017 5.9E-07 50.1 3.7 29 476-504 22-50 (145)
189 2hf9_A Probable hydrogenase ni 94.9 0.012 4E-07 54.7 2.9 23 479-501 39-61 (226)
190 2r62_A Cell division protease 94.9 0.0043 1.5E-07 59.6 -0.2 33 467-501 35-67 (268)
191 3h4m_A Proteasome-activating n 94.9 0.014 4.7E-07 56.5 3.4 28 475-502 48-75 (285)
192 1g8f_A Sulfate adenylyltransfe 94.7 0.012 4E-07 62.3 2.6 28 476-503 393-420 (511)
193 1l8q_A Chromosomal replication 94.6 0.0099 3.4E-07 58.9 1.7 28 477-504 36-63 (324)
194 4gzl_A RAS-related C3 botulinu 94.6 0.015 5.2E-07 53.3 2.9 23 478-500 30-52 (204)
195 2qz4_A Paraplegin; AAA+, SPG7, 94.6 0.018 6.1E-07 54.7 3.5 26 477-502 38-63 (262)
196 2hup_A RAS-related protein RAB 94.6 0.016 5.5E-07 53.0 2.9 21 480-500 31-51 (201)
197 2i1q_A DNA repair and recombin 94.6 0.018 6E-07 57.1 3.4 27 474-500 94-120 (322)
198 2zts_A Putative uncharacterize 94.6 0.023 7.9E-07 53.4 4.0 22 475-496 27-48 (251)
199 1ypw_A Transitional endoplasmi 94.4 0.0084 2.9E-07 67.3 0.7 34 470-503 503-536 (806)
200 1m8p_A Sulfate adenylyltransfe 94.3 0.019 6.4E-07 61.8 2.9 25 477-501 395-419 (573)
201 1njg_A DNA polymerase III subu 94.3 0.025 8.6E-07 52.2 3.5 37 467-503 31-70 (250)
202 3bh0_A DNAB-like replicative h 94.2 0.015 5.1E-07 57.6 2.0 34 466-499 56-89 (315)
203 3ec1_A YQEH GTPase; atnos1, at 94.2 0.021 7.3E-07 57.9 3.1 25 477-501 161-185 (369)
204 3b60_A Lipid A export ATP-bind 94.2 7 0.00024 41.7 35.1 9 452-460 359-367 (582)
205 1x6v_B Bifunctional 3'-phospho 94.0 0.023 7.9E-07 61.5 3.1 26 477-502 51-76 (630)
206 1puj_A YLQF, conserved hypothe 94.0 0.031 1E-06 54.5 3.5 26 478-503 120-145 (282)
207 3h2y_A GTPase family protein; 93.9 0.022 7.7E-07 57.7 2.6 25 477-501 159-183 (368)
208 3hws_A ATP-dependent CLP prote 93.9 0.025 8.5E-07 57.0 2.9 26 477-502 50-75 (363)
209 1zcb_A G alpha I/13; GTP-bindi 93.9 0.026 8.9E-07 57.1 3.0 29 477-505 32-60 (362)
210 1u94_A RECA protein, recombina 93.9 0.036 1.2E-06 55.9 4.0 34 466-500 49-85 (356)
211 2v3c_C SRP54, signal recogniti 93.8 0.016 5.5E-07 60.1 1.2 24 479-502 100-123 (432)
212 3l0i_B RAS-related protein RAB 93.8 0.0088 3E-07 54.5 -0.7 21 480-500 35-55 (199)
213 3syl_A Protein CBBX; photosynt 93.7 0.033 1.1E-06 54.4 3.3 26 477-502 66-91 (309)
214 3th5_A RAS-related C3 botulinu 92.7 0.013 4.3E-07 53.6 0.0 23 478-500 30-52 (204)
215 1sxj_D Activator 1 41 kDa subu 93.5 0.017 5.7E-07 57.5 0.8 37 466-502 44-82 (353)
216 1xwi_A SKD1 protein; VPS4B, AA 93.5 0.038 1.3E-06 54.9 3.4 27 476-502 43-69 (322)
217 3co5_A Putative two-component 93.5 0.026 8.8E-07 48.8 1.8 27 476-502 25-51 (143)
218 2vhj_A Ntpase P4, P4; non- hyd 93.4 0.038 1.3E-06 54.8 3.2 28 473-500 118-145 (331)
219 3b5x_A Lipid A export ATP-bind 93.4 9.6 0.00033 40.6 38.7 10 451-460 358-367 (582)
220 2chg_A Replication factor C sm 93.4 0.04 1.4E-06 50.2 3.0 22 480-501 40-61 (226)
221 2x2e_A Dynamin-1; nitration, h 93.3 0.033 1.1E-06 56.1 2.5 22 480-501 33-54 (353)
222 3pvs_A Replication-associated 93.2 0.023 7.8E-07 59.3 1.3 36 469-504 39-76 (447)
223 2v1u_A Cell division control p 93.2 0.036 1.2E-06 55.6 2.6 27 476-502 42-68 (387)
224 1knx_A Probable HPR(Ser) kinas 93.2 0.057 1.9E-06 53.3 4.0 33 466-499 136-168 (312)
225 2gks_A Bifunctional SAT/APS ki 93.2 0.04 1.4E-06 58.9 3.0 25 477-501 371-395 (546)
226 3qf4_B Uncharacterized ABC tra 93.1 11 0.00037 40.4 28.6 10 451-460 370-379 (598)
227 1d2n_A N-ethylmaleimide-sensit 93.1 0.038 1.3E-06 53.1 2.6 26 476-501 62-87 (272)
228 2xau_A PRE-mRNA-splicing facto 93.1 0.024 8.2E-07 63.3 1.2 32 474-505 105-136 (773)
229 3dm5_A SRP54, signal recogniti 93.1 0.04 1.4E-06 57.1 2.8 28 477-504 99-126 (443)
230 3geh_A MNME, tRNA modification 93.1 0.032 1.1E-06 58.4 2.1 25 477-501 223-247 (462)
231 1ofh_A ATP-dependent HSL prote 92.9 0.049 1.7E-06 53.0 3.1 25 478-502 50-74 (310)
232 2hjg_A GTP-binding protein ENG 92.9 0.051 1.7E-06 56.3 3.3 22 480-501 177-198 (436)
233 1bif_A 6-phosphofructo-2-kinas 92.9 0.049 1.7E-06 57.1 3.2 25 477-501 38-62 (469)
234 2q6t_A DNAB replication FORK h 92.9 0.05 1.7E-06 56.5 3.2 36 467-502 189-224 (444)
235 3d8b_A Fidgetin-like protein 1 92.8 0.056 1.9E-06 54.4 3.5 27 476-502 115-141 (357)
236 3uk6_A RUVB-like 2; hexameric 92.8 0.053 1.8E-06 54.3 3.2 28 476-503 68-95 (368)
237 2z4s_A Chromosomal replication 92.8 0.046 1.6E-06 56.8 2.8 25 478-502 130-154 (440)
238 3eie_A Vacuolar protein sortin 92.8 0.058 2E-06 53.4 3.4 26 476-501 49-74 (322)
239 2axn_A 6-phosphofructo-2-kinas 92.8 0.043 1.5E-06 58.3 2.6 26 477-502 34-59 (520)
240 1tue_A Replication protein E1; 92.8 0.048 1.7E-06 50.5 2.6 29 474-502 54-82 (212)
241 1lnz_A SPO0B-associated GTP-bi 92.8 0.055 1.9E-06 54.3 3.2 33 469-501 149-181 (342)
242 3t15_A Ribulose bisphosphate c 92.7 0.058 2E-06 52.7 3.2 26 477-502 35-60 (293)
243 2bjv_A PSP operon transcriptio 92.7 0.074 2.5E-06 50.8 3.9 28 477-504 28-55 (265)
244 3p32_A Probable GTPase RV1496/ 92.6 0.057 1.9E-06 54.3 3.1 25 478-502 79-103 (355)
245 1f5n_A Interferon-induced guan 92.5 0.052 1.8E-06 58.4 2.8 33 467-502 30-62 (592)
246 2j69_A Bacterial dynamin-like 92.5 0.06 2E-06 59.3 3.3 27 476-502 67-93 (695)
247 2yl4_A ATP-binding cassette SU 92.5 13 0.00044 39.7 35.6 10 451-460 359-368 (595)
248 2qpt_A EH domain-containing pr 92.4 0.055 1.9E-06 57.9 2.8 23 479-501 66-88 (550)
249 2ck3_D ATP synthase subunit be 92.4 0.075 2.5E-06 55.4 3.7 32 471-502 146-177 (482)
250 1um8_A ATP-dependent CLP prote 92.4 0.063 2.1E-06 54.3 3.1 26 477-502 71-96 (376)
251 3gee_A MNME, tRNA modification 92.3 0.054 1.8E-06 56.9 2.6 25 477-501 232-256 (476)
252 1xp8_A RECA protein, recombina 92.3 0.081 2.8E-06 53.6 3.8 26 474-499 70-95 (366)
253 4a1f_A DNAB helicase, replicat 92.3 0.043 1.5E-06 54.9 1.7 35 467-501 35-69 (338)
254 3io5_A Recombination and repai 92.3 0.051 1.8E-06 53.8 2.2 24 475-499 26-50 (333)
255 2qgz_A Helicase loader, putati 92.2 0.079 2.7E-06 52.2 3.5 25 478-502 152-176 (308)
256 2qby_B CDC6 homolog 3, cell di 92.1 0.074 2.5E-06 53.4 3.3 25 478-502 45-69 (384)
257 2qp9_X Vacuolar protein sortin 92.1 0.068 2.3E-06 53.8 3.0 27 476-502 82-108 (355)
258 3pfi_A Holliday junction ATP-d 92.0 0.071 2.4E-06 52.8 3.0 25 479-503 56-80 (338)
259 3o47_A ADP-ribosylation factor 92.0 0.065 2.2E-06 53.4 2.6 21 480-500 167-187 (329)
260 2qen_A Walker-type ATPase; unk 91.9 0.086 2.9E-06 52.0 3.4 25 476-500 29-53 (350)
261 1j3b_A ATP-dependent phosphoen 91.8 0.06 2E-06 56.7 2.2 22 476-497 223-244 (529)
262 3dpu_A RAB family protein; roc 91.7 0.084 2.9E-06 56.2 3.3 23 479-501 42-64 (535)
263 1g41_A Heat shock protein HSLU 91.6 0.09 3.1E-06 54.5 3.3 25 480-504 52-76 (444)
264 1hqc_A RUVB; extended AAA-ATPa 91.6 0.061 2.1E-06 52.8 1.9 25 477-501 37-61 (324)
265 2j37_W Signal recognition part 91.5 0.069 2.4E-06 56.4 2.2 25 477-501 100-124 (504)
266 4b4t_K 26S protease regulatory 91.3 0.11 3.6E-06 53.8 3.4 29 474-502 202-230 (428)
267 4b4t_M 26S protease regulatory 91.2 0.11 3.9E-06 53.6 3.5 29 474-502 211-239 (434)
268 3vfd_A Spastin; ATPase, microt 91.2 0.12 3.9E-06 52.6 3.5 27 476-502 146-172 (389)
269 4b4t_L 26S protease subunit RP 91.2 0.11 3.9E-06 53.7 3.5 29 474-502 211-239 (437)
270 2wkq_A NPH1-1, RAS-related C3 91.1 0.098 3.3E-06 51.3 2.9 25 475-499 152-176 (332)
271 2zan_A Vacuolar protein sortin 91.1 0.12 4E-06 53.7 3.5 27 476-502 165-191 (444)
272 1fx0_B ATP synthase beta chain 91.0 0.096 3.3E-06 54.8 2.7 32 471-502 158-189 (498)
273 3gqb_A V-type ATP synthase alp 90.9 0.11 3.6E-06 55.0 3.0 31 471-501 214-244 (578)
274 2olr_A Phosphoenolpyruvate car 90.9 0.1 3.5E-06 54.9 2.9 21 476-496 239-259 (540)
275 3mfy_A V-type ATP synthase alp 90.8 0.084 2.9E-06 55.8 2.1 32 470-501 219-250 (588)
276 3vr4_A V-type sodium ATPase ca 90.7 0.12 4E-06 55.0 3.0 31 471-501 225-255 (600)
277 4b4t_J 26S protease regulatory 90.6 0.12 4.1E-06 52.8 3.0 28 475-502 179-206 (405)
278 2c61_A A-type ATP synthase non 90.5 0.073 2.5E-06 55.4 1.3 34 471-504 145-178 (469)
279 1sxj_A Activator 1 95 kDa subu 90.5 0.13 4.5E-06 54.4 3.3 26 477-502 76-101 (516)
280 1ii2_A Phosphoenolpyruvate car 90.5 0.12 4.2E-06 54.4 3.0 21 476-496 211-231 (524)
281 3hu3_A Transitional endoplasmi 90.4 0.14 4.8E-06 53.9 3.4 28 475-502 235-262 (489)
282 2r44_A Uncharacterized protein 90.4 0.11 3.6E-06 51.4 2.3 34 469-502 37-70 (331)
283 2xxa_A Signal recognition part 90.0 0.11 3.8E-06 53.7 2.2 26 477-502 99-124 (433)
284 1ytm_A Phosphoenolpyruvate car 89.9 0.14 4.9E-06 53.9 2.9 21 476-496 232-253 (532)
285 2r9v_A ATP synthase subunit al 89.9 0.15 5.2E-06 53.4 3.1 33 471-503 168-201 (515)
286 2c9o_A RUVB-like 1; hexameric 89.8 0.17 5.9E-06 52.6 3.5 29 475-503 60-88 (456)
287 2fna_A Conserved hypothetical 89.7 0.16 5.4E-06 50.1 3.0 23 479-501 31-53 (357)
288 4b4t_H 26S protease regulatory 89.7 0.16 5.5E-06 52.7 3.0 28 474-501 239-266 (467)
289 3bgw_A DNAB-like replicative h 89.7 0.17 6E-06 52.5 3.4 33 467-499 186-218 (444)
290 3q5d_A Atlastin-1; G protein, 89.6 0.16 5.3E-06 52.8 2.9 23 479-501 68-90 (447)
291 3izq_1 HBS1P, elongation facto 89.4 0.18 6.1E-06 54.6 3.3 25 477-501 166-190 (611)
292 1jr3_A DNA polymerase III subu 89.3 0.22 7.4E-06 49.7 3.6 37 467-503 24-63 (373)
293 3pxg_A Negative regulator of g 89.2 0.18 6.2E-06 52.7 3.1 27 476-502 199-225 (468)
294 4b4t_I 26S protease regulatory 89.2 0.21 7.1E-06 51.4 3.4 28 474-501 212-239 (437)
295 1xzp_A Probable tRNA modificat 89.1 0.068 2.3E-06 56.2 -0.2 24 478-501 243-266 (482)
296 1w5s_A Origin recognition comp 89.1 0.16 5.4E-06 51.4 2.5 25 477-501 49-75 (412)
297 1e9r_A Conjugal transfer prote 89.1 0.18 6E-06 52.0 2.8 22 478-499 53-74 (437)
298 3nbx_X ATPase RAVA; AAA+ ATPas 88.9 0.22 7.5E-06 52.5 3.5 36 467-502 30-65 (500)
299 3lvq_E ARF-GAP with SH3 domain 88.8 0.2 6.8E-06 52.6 3.1 23 479-501 323-345 (497)
300 4dcu_A GTP-binding protein ENG 88.8 0.2 7E-06 52.0 3.1 25 477-501 194-218 (456)
301 1g8p_A Magnesium-chelatase 38 88.7 0.1 3.5E-06 51.7 0.8 26 478-503 45-70 (350)
302 4a9a_A Ribosome-interacting GT 88.5 0.19 6.4E-06 51.0 2.5 23 480-502 74-96 (376)
303 2qe7_A ATP synthase subunit al 88.5 0.19 6.5E-06 52.6 2.5 33 471-503 155-188 (502)
304 3gqb_B V-type ATP synthase bet 88.4 0.11 3.9E-06 53.7 0.8 34 471-504 140-173 (464)
305 1iqp_A RFCS; clamp loader, ext 88.3 0.22 7.6E-06 48.5 2.9 22 480-501 48-69 (327)
306 2iut_A DNA translocase FTSK; n 88.3 0.29 1E-05 52.2 3.9 29 470-498 206-234 (574)
307 3qq5_A Small GTP-binding prote 88.3 0.075 2.6E-06 54.9 -0.7 22 480-501 36-57 (423)
308 3vr4_D V-type sodium ATPase su 88.2 0.14 4.7E-06 53.1 1.3 32 473-504 146-177 (465)
309 1z6t_A APAF-1, apoptotic prote 88.2 0.23 8E-06 53.1 3.2 24 477-500 146-169 (591)
310 4ido_A Atlastin-1; GTPase, GTP 88.2 0.19 6.6E-06 52.0 2.4 24 479-502 68-91 (457)
311 2ck3_A ATP synthase subunit al 88.1 0.17 5.7E-06 53.2 1.9 33 471-503 155-188 (510)
312 3p26_A Elongation factor 1 alp 88.0 0.19 6.6E-06 52.7 2.3 22 480-501 35-56 (483)
313 2chq_A Replication factor C sm 87.9 0.24 8.1E-06 48.1 2.8 22 480-501 40-61 (319)
314 1sxj_B Activator 1 37 kDa subu 87.7 0.25 8.6E-06 48.0 2.9 21 481-501 45-65 (323)
315 1r6b_X CLPA protein; AAA+, N-t 87.6 0.28 9.6E-06 54.4 3.4 27 476-502 205-231 (758)
316 1q57_A DNA primase/helicase; d 87.4 0.22 7.6E-06 52.4 2.4 33 468-500 232-264 (503)
317 1fx0_A ATP synthase alpha chai 87.3 0.21 7.3E-06 52.3 2.0 33 471-503 156-189 (507)
318 3oaa_A ATP synthase subunit al 87.2 0.21 7.2E-06 52.2 2.0 30 472-501 156-186 (513)
319 1u0j_A DNA replication protein 87.2 0.32 1.1E-05 46.8 3.1 28 476-503 102-129 (267)
320 2a5y_B CED-4; apoptosis; HET: 86.5 0.33 1.1E-05 51.7 3.2 23 478-500 152-174 (549)
321 3cmu_A Protein RECA, recombina 86.4 0.23 8E-06 60.3 2.0 35 465-499 1066-1102(2050)
322 3cf2_A TER ATPase, transitiona 86.3 0.35 1.2E-05 53.8 3.3 29 474-502 234-262 (806)
323 3pxi_A Negative regulator of g 86.1 0.34 1.2E-05 53.7 3.1 27 476-502 199-225 (758)
324 3cmw_A Protein RECA, recombina 85.9 0.29 1E-05 58.6 2.5 29 475-503 729-757 (1706)
325 3te6_A Regulatory protein SIR3 85.9 0.33 1.1E-05 48.1 2.5 26 477-502 44-69 (318)
326 3mca_A HBS1, elongation factor 85.7 0.38 1.3E-05 51.8 3.1 21 480-500 179-199 (592)
327 4akg_A Glutathione S-transfera 85.3 0.35 1.2E-05 60.6 2.9 26 477-502 922-947 (2695)
328 3f9v_A Minichromosome maintena 85.3 0.35 1.2E-05 52.1 2.6 24 480-503 329-352 (595)
329 3zvr_A Dynamin-1; hydrolase, D 85.0 0.56 1.9E-05 51.9 4.0 23 480-502 53-75 (772)
330 1qvr_A CLPB protein; coiled co 84.9 0.33 1.1E-05 54.6 2.3 26 477-502 190-215 (854)
331 1of1_A Thymidine kinase; trans 84.6 0.35 1.2E-05 48.9 2.0 28 476-503 47-74 (376)
332 3cmu_A Protein RECA, recombina 84.2 0.6 2E-05 56.8 4.0 25 475-499 1424-1448(2050)
333 1qvr_A CLPB protein; coiled co 83.9 0.35 1.2E-05 54.5 1.8 25 479-503 589-613 (854)
334 3end_A Light-independent proto 83.9 0.58 2E-05 45.6 3.2 28 475-502 38-65 (307)
335 3u61_B DNA polymerase accessor 83.8 0.56 1.9E-05 45.9 3.1 23 480-502 50-72 (324)
336 3e1s_A Exodeoxyribonuclease V, 83.6 0.41 1.4E-05 51.3 2.2 27 477-503 203-229 (574)
337 1lkx_A Myosin IE heavy chain; 83.4 0.47 1.6E-05 51.9 2.5 28 476-503 92-119 (697)
338 3vkg_A Dynein heavy chain, cyt 83.2 0.48 1.6E-05 60.0 2.8 25 479-503 907-931 (3245)
339 3cmw_A Protein RECA, recombina 82.8 0.73 2.5E-05 55.3 4.0 35 465-499 19-55 (1706)
340 1r5b_A Eukaryotic peptide chai 82.3 0.49 1.7E-05 49.4 2.1 21 479-499 44-64 (467)
341 1w9i_A Myosin II heavy chain; 81.6 0.6 2.1E-05 51.6 2.5 28 476-503 170-197 (770)
342 3pxi_A Negative regulator of g 81.6 0.68 2.3E-05 51.3 3.1 23 480-502 523-545 (758)
343 4db1_A Myosin-7; S1DC, cardiac 81.6 0.57 2E-05 51.9 2.4 28 476-503 169-196 (783)
344 2v26_A Myosin VI; calmodulin-b 81.3 0.59 2E-05 51.9 2.4 28 476-503 138-165 (784)
345 1w7j_A Myosin VA; motor protei 81.1 0.61 2.1E-05 51.8 2.4 28 476-503 154-181 (795)
346 1r6b_X CLPA protein; AAA+, N-t 81.0 0.73 2.5E-05 51.0 3.0 23 480-502 490-512 (758)
347 3e2i_A Thymidine kinase; Zn-bi 80.9 0.77 2.6E-05 42.6 2.6 26 476-501 26-52 (219)
348 1vt4_I APAF-1 related killer D 80.5 0.82 2.8E-05 52.3 3.2 23 477-499 149-171 (1221)
349 1kk8_A Myosin heavy chain, str 78.9 0.69 2.3E-05 51.7 1.9 28 476-503 167-194 (837)
350 1g8x_A Myosin II heavy chain f 78.4 0.77 2.6E-05 52.5 2.1 28 476-503 170-197 (1010)
351 2ycu_A Non muscle myosin 2C, a 78.4 0.82 2.8E-05 52.2 2.3 28 476-503 144-171 (995)
352 4anj_A Unconventional myosin-V 78.2 0.85 2.9E-05 52.2 2.4 28 476-503 142-169 (1052)
353 1cip_A Protein (guanine nucleo 77.3 1.1 3.9E-05 44.8 2.8 25 479-503 33-57 (353)
354 3upu_A ATP-dependent DNA helic 77.0 1.2 4.1E-05 46.1 3.0 38 465-502 31-69 (459)
355 2dfs_A Myosin-5A; myosin-V, in 76.2 0.88 3E-05 52.4 1.8 28 476-503 154-181 (1080)
356 1w36_D RECD, exodeoxyribonucle 75.9 1.2 4.1E-05 48.0 2.7 25 477-501 163-187 (608)
357 1qde_A EIF4A, translation init 75.4 1.7 5.8E-05 39.7 3.3 28 476-503 49-78 (224)
358 3vqt_A RF-3, peptide chain rel 75.2 1.4 4.9E-05 46.8 3.1 25 475-499 28-52 (548)
359 3avx_A Elongation factor TS, e 75.2 1.3 4.5E-05 51.1 2.9 22 479-500 297-318 (1289)
360 2j9r_A Thymidine kinase; TK1, 75.1 1.5 5.1E-05 40.6 2.7 25 476-500 26-51 (214)
361 4akg_A Glutathione S-transfera 73.7 1.3 4.4E-05 55.6 2.5 28 474-501 1263-1291(2695)
362 2gxq_A Heat resistant RNA depe 73.1 1.7 5.7E-05 39.1 2.6 26 477-502 37-64 (207)
363 3b6e_A Interferon-induced heli 72.8 1.2 4.3E-05 40.1 1.6 23 477-499 47-69 (216)
364 2va8_A SSO2462, SKI2-type heli 71.9 1.7 5.8E-05 47.6 2.7 22 476-497 44-65 (715)
365 3cf2_A TER ATPase, transitiona 71.3 1.7 5.7E-05 48.5 2.4 35 467-503 502-536 (806)
366 3sfz_A APAF-1, apoptotic pepti 69.9 2.1 7.3E-05 49.5 3.1 24 477-500 146-169 (1249)
367 2pl3_A Probable ATP-dependent 69.4 2.8 9.5E-05 38.7 3.2 20 476-495 60-79 (236)
368 1i84_S Smooth muscle myosin he 69.1 1.1 3.9E-05 52.2 0.5 28 476-503 167-194 (1184)
369 3vkw_A Replicase large subunit 69.1 2.2 7.5E-05 44.0 2.6 27 474-500 157-183 (446)
370 3iuy_A Probable ATP-dependent 69.0 2.1 7.3E-05 39.2 2.3 20 476-495 55-74 (228)
371 3rc3_A ATP-dependent RNA helic 69.0 1.8 6.2E-05 47.3 2.1 18 477-494 154-171 (677)
372 2fz4_A DNA repair protein RAD2 68.5 3 0.0001 38.9 3.3 24 477-500 107-130 (237)
373 2oxc_A Probable ATP-dependent 68.2 3 0.0001 38.3 3.2 29 475-503 58-88 (230)
374 3dkp_A Probable ATP-dependent 68.0 2.8 9.4E-05 38.9 2.9 28 476-503 64-93 (245)
375 1q0u_A Bstdead; DEAD protein, 67.5 2.8 9.6E-05 38.1 2.8 26 477-502 40-67 (219)
376 1azs_C GS-alpha; complex (lyas 67.0 2.9 9.8E-05 42.6 2.9 24 479-502 41-64 (402)
377 2oze_A ORF delta'; para, walke 66.8 2.9 9.8E-05 40.2 2.8 26 477-502 33-61 (298)
378 1vec_A ATP-dependent RNA helic 66.4 3.1 0.00011 37.2 2.8 19 477-495 39-57 (206)
379 2z0m_A 337AA long hypothetical 66.4 2.7 9.2E-05 40.6 2.6 21 477-497 30-50 (337)
380 3fkq_A NTRC-like two-domain pr 65.0 3.4 0.00012 41.4 3.1 27 475-501 140-167 (373)
381 2zj8_A DNA helicase, putative 65.0 2.6 8.8E-05 46.3 2.3 19 477-495 38-56 (720)
382 3ber_A Probable ATP-dependent 64.9 3.1 0.00011 39.0 2.6 21 475-495 77-97 (249)
383 3c5h_A Glucocorticoid receptor 63.0 4.5 0.00015 38.0 3.3 17 484-500 34-50 (255)
384 1t6n_A Probable ATP-dependent 61.9 3.8 0.00013 37.1 2.6 19 477-495 50-68 (220)
385 2p6r_A Afuhel308 helicase; pro 61.8 2.2 7.5E-05 46.6 1.0 21 476-496 38-58 (702)
386 2zci_A Phosphoenolpyruvate car 61.8 3.1 0.0001 43.8 2.0 26 473-498 256-283 (610)
387 3cio_A ETK, tyrosine-protein k 61.5 4.9 0.00017 38.9 3.4 27 476-502 102-129 (299)
388 3bor_A Human initiation factor 61.0 3.2 0.00011 38.4 1.8 20 476-495 65-84 (237)
389 3ly5_A ATP-dependent RNA helic 60.6 3.5 0.00012 38.9 2.1 20 476-495 89-108 (262)
390 3fe2_A Probable ATP-dependent 60.6 4.6 0.00016 37.4 2.9 20 476-495 64-83 (242)
391 1wrb_A DJVLGB; RNA helicase, D 59.1 4.5 0.00015 37.7 2.6 21 475-495 57-77 (253)
392 3bfv_A CAPA1, CAPB2, membrane 58.9 6.4 0.00022 37.5 3.6 27 476-502 80-107 (271)
393 1hv8_A Putative ATP-dependent 58.8 6 0.00021 38.5 3.5 19 478-496 44-62 (367)
394 3fht_A ATP-dependent RNA helic 56.8 7.5 0.00026 38.6 3.9 26 477-502 63-90 (412)
395 1ny5_A Transcriptional regulat 56.1 6.5 0.00022 39.6 3.3 26 478-503 160-185 (387)
396 3dzd_A Transcriptional regulat 55.2 6.3 0.00022 39.4 3.0 27 477-503 151-177 (368)
397 2gk6_A Regulator of nonsense t 54.9 6.9 0.00024 42.1 3.4 21 478-498 195-215 (624)
398 1s2m_A Putative ATP-dependent 54.7 6.7 0.00023 39.0 3.1 19 477-495 57-75 (400)
399 3pey_A ATP-dependent RNA helic 54.0 7.3 0.00025 38.3 3.3 18 478-495 44-61 (395)
400 2i4i_A ATP-dependent RNA helic 53.7 5.6 0.00019 39.7 2.3 20 475-494 49-68 (417)
401 3eiq_A Eukaryotic initiation f 53.1 5.8 0.0002 39.5 2.3 20 476-495 75-94 (414)
402 3vkg_A Dynein heavy chain, cyt 52.3 5.2 0.00018 51.0 2.1 28 474-501 1300-1328(3245)
403 3fwy_A Light-independent proto 51.5 8.7 0.0003 37.5 3.2 25 472-496 42-66 (314)
404 2faf_A Phosphoenolpyruvate car 50.9 3.2 0.00011 43.6 0.0 26 473-498 256-283 (608)
405 3oiy_A Reverse gyrase helicase 50.8 6.3 0.00021 39.6 2.2 19 477-495 35-53 (414)
406 1rif_A DAR protein, DNA helica 50.3 7.2 0.00025 37.0 2.4 23 478-500 128-150 (282)
407 3fmo_B ATP-dependent RNA helic 50.0 8.9 0.0003 37.0 3.0 26 478-503 131-158 (300)
408 3fmp_B ATP-dependent RNA helic 49.9 10 0.00035 39.0 3.6 19 477-495 130-148 (479)
409 3o8b_A HCV NS3 protease/helica 49.5 6 0.00021 43.0 1.8 23 474-496 228-250 (666)
410 3la6_A Tyrosine-protein kinase 49.2 9.8 0.00033 36.6 3.2 27 477-503 91-118 (286)
411 2whx_A Serine protease/ntpase/ 49.0 5 0.00017 43.3 1.1 28 475-502 183-212 (618)
412 4a4z_A Antiviral helicase SKI2 49.0 7.3 0.00025 44.5 2.5 22 475-496 51-72 (997)
413 2j0s_A ATP-dependent RNA helic 48.8 8 0.00027 38.6 2.6 21 475-495 71-91 (410)
414 1xti_A Probable ATP-dependent 48.6 8.1 0.00028 38.1 2.6 19 477-495 44-62 (391)
415 3fho_A ATP-dependent RNA helic 48.6 10 0.00035 39.5 3.4 25 478-502 158-184 (508)
416 3czq_A Putative polyphosphate 47.5 13 0.00043 36.2 3.6 29 477-505 85-113 (304)
417 3ez2_A Plasmid partition prote 46.2 9.9 0.00034 38.2 2.8 26 476-501 106-132 (398)
418 1fuu_A Yeast initiation factor 46.0 9 0.00031 37.7 2.4 19 477-495 57-75 (394)
419 2wjy_A Regulator of nonsense t 44.7 13 0.00043 41.4 3.5 21 478-498 371-391 (800)
420 2ykg_A Probable ATP-dependent 44.4 12 0.0004 40.5 3.2 23 477-499 27-49 (696)
421 3l9o_A ATP-dependent RNA helic 43.3 9.4 0.00032 44.1 2.3 23 475-497 196-218 (1108)
422 2xgj_A ATP-dependent RNA helic 42.2 10 0.00036 43.3 2.4 21 476-496 99-119 (1010)
423 2xzl_A ATP-dependent helicase 42.2 14 0.00048 41.1 3.4 19 478-496 375-393 (802)
424 2fwr_A DNA repair protein RAD2 41.3 14 0.00048 37.7 3.1 24 476-499 106-129 (472)
425 3ez9_A Para; DNA binding, wing 40.5 7.9 0.00027 39.0 1.0 26 476-501 109-135 (403)
426 4b3f_X DNA-binding protein smu 40.1 15 0.0005 39.7 3.1 27 477-503 204-231 (646)
427 3i5x_A ATP-dependent RNA helic 39.4 16 0.00056 38.2 3.3 18 477-494 110-127 (563)
428 2wv9_A Flavivirin protease NS2 38.7 8.2 0.00028 42.0 0.8 19 477-495 240-258 (673)
429 2oca_A DAR protein, ATP-depend 38.0 15 0.00053 37.8 2.8 23 477-499 127-149 (510)
430 1kjw_A Postsynaptic density pr 37.9 18 0.00061 35.0 3.0 26 474-502 101-126 (295)
431 3k9g_A PF-32 protein; ssgcid, 37.0 14 0.00047 34.6 2.0 22 480-501 30-51 (267)
432 2v1x_A ATP-dependent DNA helic 37.0 14 0.00049 39.4 2.4 24 476-499 57-80 (591)
433 1oyw_A RECQ helicase, ATP-depe 35.9 11 0.00039 39.4 1.4 21 477-497 39-59 (523)
434 3sqw_A ATP-dependent RNA helic 35.7 20 0.00069 37.9 3.3 18 477-494 59-76 (579)
435 2db3_A ATP-dependent RNA helic 35.6 19 0.00066 36.5 3.0 20 475-494 90-109 (434)
436 1eaq_A RUNT-related transcript 34.2 7.9 0.00027 32.1 -0.2 11 482-492 90-100 (140)
437 3tuf_B Stage II sporulation pr 32.5 17 0.00058 34.2 1.8 20 474-493 142-161 (245)
438 3f8t_A Predicted ATPase involv 29.2 17 0.00058 37.8 1.2 23 480-503 241-264 (506)
439 3it5_A Protease LASA; metallop 28.8 14 0.00047 33.1 0.4 20 474-493 92-117 (182)
440 3moe_A Phosphoenolpyruvate car 28.4 29 0.001 36.6 2.8 26 473-498 272-299 (624)
441 1gku_B Reverse gyrase, TOP-RG; 26.2 20 0.0007 41.1 1.3 19 475-493 68-86 (1054)
442 4ddu_A Reverse gyrase; topoiso 24.9 32 0.0011 39.6 2.7 18 478-495 93-110 (1104)
443 3h1t_A Type I site-specific re 24.6 41 0.0014 35.4 3.3 24 479-502 199-223 (590)
444 1svp_A Sindbis virus capsid pr 23.9 40 0.0014 28.2 2.3 32 447-484 88-125 (161)
445 1vcp_A Semliki forest virus ca 22.7 44 0.0015 27.5 2.3 32 447-484 79-116 (149)
446 1g5t_A COB(I)alamin adenosyltr 22.6 38 0.0013 30.5 2.2 19 479-497 29-47 (196)
447 4a2q_A RIG-I, retinoic acid in 21.9 47 0.0016 36.6 3.2 22 476-497 261-282 (797)
448 3czp_A Putative polyphosphate 21.9 43 0.0015 34.9 2.7 29 477-505 42-70 (500)
449 1gm5_A RECG; helicase, replica 21.3 42 0.0014 37.1 2.6 18 480-497 391-408 (780)
450 4f92_B U5 small nuclear ribonu 20.1 45 0.0015 40.4 2.7 22 476-497 940-961 (1724)
No 1
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1e-51 Score=452.04 Aligned_cols=392 Identities=20% Similarity=0.344 Sum_probs=342.3
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 116 VWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-REEAMVFHKSSRFLVLLCVTSGIFSGLRSGC 194 (510)
Q Consensus 116 ~~~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~ 194 (510)
.++.+++++++++++++.++.++++.++.+++.+..|++++..++... ..+...+......+.++.++..++.+++.+.
T Consensus 21 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (598)
T 3qf4_B 21 PTATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWLQGKI 100 (598)
T ss_dssp HHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999888876432 1222222222233444556667788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 010471 195 FSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLT 274 (510)
Q Consensus 195 ~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~ 274 (510)
....+.++..++|.++|+|++++|++||+++++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|+++
T Consensus 101 ~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 180 (598)
T 3qf4_B 101 MLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILS 180 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 275 LSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAY 354 (510)
Q Consensus 275 li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (510)
+++++.+|++.++...+.++.++..++.++..++.++.+.|+++|+++||+|+.|+.+.++|++..++..+...+.....
T Consensus 181 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (598)
T 3qf4_B 181 LVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFS 260 (598)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888888899999999999999999999999999999999999999999888877666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 010471 355 GLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSN 434 (510)
Q Consensus 355 ~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~ 434 (510)
+....+..++..+..++++++|++++..|.+++|.+++++.|...+..|+..+...+..+.++..+++|+.++++.+++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 340 (598)
T 3qf4_B 261 GVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEK 340 (598)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 66667777777777788899999999999999999999999999999999999999999999999999999999987764
Q ss_pred CCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 435 QFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 435 ~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
+. ++.....+..++|+++||+|+|++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|+
T Consensus 341 ~~-~~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~ 413 (598)
T 3qf4_B 341 DD-PDAVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQIL 413 (598)
T ss_dssp CC-SSCCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEE
T ss_pred CC-CCCCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEE
Confidence 32 122222334578999999999974 35799999999999999999999999999999999999999999984
No 2
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=4.5e-51 Score=447.03 Aligned_cols=394 Identities=25% Similarity=0.392 Sum_probs=334.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchh---hh-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 117 WIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE---EA-MVFHKSSRFLVLLCVTSGIFSGLRS 192 (510)
Q Consensus 117 ~~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~---~~-~~~~~~~~~l~~l~~~~~~~~~i~~ 192 (510)
++.+++++++.+++++.++.++++.++.+++.+..|+++...++..... +. ..+......+.++.++..++.+++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (595)
T 2yl4_A 4 LPEARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRV 83 (595)
T ss_dssp HHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788889999999999999999999999988998887776532111 10 0111111122233444556677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 010471 193 GCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWP 272 (510)
Q Consensus 193 ~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~ 272 (510)
+.....+.++..++|.++|+|++++|++||+++++|++++|+++|++.+++.+...+..++..++.+++.++++++++|+
T Consensus 84 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 163 (595)
T 2yl4_A 84 YLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPN 163 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 88888999999999999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 273 LTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESM 352 (510)
Q Consensus 273 l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~ 352 (510)
+++++++.+|++.++...+.++.++..++.++..++.++.+.|+++|+++||+|+.|+.+.++|++..++..+...+...
T Consensus 164 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 243 (595)
T 2yl4_A 164 LATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAF 243 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888888888888889999999999999999999999999999999999999998888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 010471 353 AYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP 432 (510)
Q Consensus 353 ~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~ 432 (510)
..+.......++..+..++++++|++++.+|.+++|+++++..+...+..|+..+...+..+.++..+.+|+.|+++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 323 (595)
T 2yl4_A 244 ARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREP 323 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 77776677777777777788899999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCccCCCcccc-EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 433 SNQFLSEGVKLQRLMGH-VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 433 e~~~~~~~~~~~~~~~~-I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
+.+...+...+.+..++ |+++||+|+|++++++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|+
T Consensus 324 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~ 402 (595)
T 2yl4_A 324 KLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTIS 402 (595)
T ss_dssp SSCSSCSBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEE
T ss_pred ccCCCCCCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEE
Confidence 54321111111223567 9999999999864335799999999999999999999999999999999999999999984
No 3
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.5e-51 Score=449.53 Aligned_cols=389 Identities=20% Similarity=0.280 Sum_probs=336.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 121 SRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-REEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIAN 199 (510)
Q Consensus 121 ~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~ 199 (510)
++++++++++++.++.++++.++.+++.++.|+++...++... ..+...+......+.++.++..++.+++.+.....+
T Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (587)
T 3qf4_A 12 KTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIGCTVFASYAS 91 (587)
T ss_dssp CCGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999888876432 222222222222333444556667778888888999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 010471 200 IVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALL 279 (510)
Q Consensus 200 ~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~li~li 279 (510)
.++..++|.++|+|++++|+.+|+++++|++++|+++|++.+++.+...+..++...+.+++.+++++.++|++++++++
T Consensus 92 ~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~ 171 (587)
T 3qf4_A 92 QNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIF 171 (587)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 280 ICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNM 359 (510)
Q Consensus 280 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (510)
.+|++.++..++.++.++..++.++..++.++.+.|+++|+++||+|+.|+.+.++|++..+++.+...+.....+....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (587)
T 3qf4_A 172 LIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALP 251 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888888888888889999999999999999999999999999999999999999888887766666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 010471 360 SFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE 439 (510)
Q Consensus 360 ~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~ 439 (510)
...++..+..++++++|++++..|.+++|++++++.|...+..|+..+...+..+.++..+++|+.++++.+++.++..+
T Consensus 252 ~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~ 331 (587)
T 3qf4_A 252 LFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADN 331 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCC
Confidence 67777777778889999999999999999999999999999999999999999999999999999999998776432222
Q ss_pred CccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 440 GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 440 ~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
....++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|+
T Consensus 332 ~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~ 401 (587)
T 3qf4_A 332 ALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVE 401 (587)
T ss_dssp CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEE
T ss_pred ccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEE
Confidence 22223345789999999999754 46799999999999999999999999999999999999999999984
No 4
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.5e-51 Score=481.79 Aligned_cols=392 Identities=22% Similarity=0.291 Sum_probs=329.9
Q ss_pred HHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhch------------------hhhHHHHHH----HH
Q 010471 119 ALSRMWNLIGRD-KWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR------------------EEAMVFHKS----SR 175 (510)
Q Consensus 119 ~l~~l~~~~~~~-~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~------------------~~~~~~~~~----~~ 175 (510)
.++++++|..++ +..++.+++++++.++..-.++.+++..++.-.. .....+... ..
T Consensus 61 ~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (1321)
T 4f4c_A 61 SIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVMNVVW 140 (1321)
T ss_dssp CHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHHHHHH
T ss_pred CHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHHHHHHH
Confidence 356777887654 4555666666665554333333344443321000 001112111 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 010471 176 FLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRN 255 (510)
Q Consensus 176 ~l~~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~ 255 (510)
.++++.++..++.+++.++..++++++..++|.++|+|++++|++|||++++|++++|+++|++.+++.++..+..++..
T Consensus 141 ~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~ 220 (1321)
T 4f4c_A 141 SYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQY 220 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556667788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHH
Q 010471 256 SLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGR 335 (510)
Q Consensus 256 ~~~~i~~li~l~~~s~~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~ 335 (510)
++++++.++++++++|++++++++++|++.++...+.++.++..++.++..++.++.+.|+++|+++||+|+.|+.+.++
T Consensus 221 ~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~ 300 (1321)
T 4f4c_A 221 LSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELER 300 (1321)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHH
Confidence 99999999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 336 YKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLL 415 (510)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~ 415 (510)
|++..++..+...+.....+.......++..+..++++|+|++++.+|.+++|++++++.+...+..|+..+...+..+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~ 380 (1321)
T 4f4c_A 301 YSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLG 380 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888877777777777777778888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCC-CccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHH
Q 010471 416 QSIGATEKVFQLIDLLPSNQFLSE-GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTF 494 (510)
Q Consensus 416 ~~~~a~~rl~eil~~~~e~~~~~~-~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL 494 (510)
++..+++|++++++.+|+.+...+ +..+.+.+++|+|+||+|+||+++++++|+|+||+||+||++|||||||||||||
T Consensus 381 ~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl 460 (1321)
T 4f4c_A 381 TAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTI 460 (1321)
T ss_dssp HHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHH
T ss_pred HHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHH
Confidence 999999999999998876543222 2233445689999999999998777899999999999999999999999999999
Q ss_pred HHHHhcccCCCCceeC
Q 010471 495 VNLLLRLYEPSDGQVC 510 (510)
Q Consensus 495 ~kLL~g~y~p~sG~I~ 510 (510)
++||+|+|+|++|+|+
T Consensus 461 l~ll~~~~~~~~G~I~ 476 (1321)
T 4f4c_A 461 ISLLLRYYDVLKGKIT 476 (1321)
T ss_dssp HHHHTTSSCCSEEEEE
T ss_pred HHHhccccccccCccc
Confidence 9999999999999984
No 5
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=3.3e-50 Score=439.14 Aligned_cols=391 Identities=23% Similarity=0.355 Sum_probs=336.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 117 WIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR-EEAMVFHKSSRFLVLLCVTSGIFSGLRSGCF 195 (510)
Q Consensus 117 ~~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~ 195 (510)
++.+++++++.+++++.++.++++.++.+++.+..|+++...++.... .+..........+.++.++..++.+++.+..
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (582)
T 3b5x_A 10 WQTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGFASSYCL 89 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788899999999998888999999999998899888777654321 1111111111112333455666778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010471 196 SIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTL 275 (510)
Q Consensus 196 ~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~l 275 (510)
...+.++..++|.++|++++++|++||+++++|++++|+++|++.+++.+...+..++..++.+++++++++.++|++++
T Consensus 90 ~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 169 (582)
T 3b5x_A 90 SWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSL 169 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 276 SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG 355 (510)
Q Consensus 276 i~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (510)
++++++|++.++...+.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+..+
T Consensus 170 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (582)
T 3b5x_A 170 VLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQS 249 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888888888888899999999999999999999999999999999999999999988887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 010471 356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ 435 (510)
Q Consensus 356 ~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~ 435 (510)
.......++..+..++++++|++++.+|.+++|++++++.+...+..|+..+...+..+.++..+.+|+.++++.+++.+
T Consensus 250 ~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 329 (582)
T 3b5x_A 250 IADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD 329 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Confidence 77777777777788888999999999999999999999999999999999999999999999999999999998776533
Q ss_pred CCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 436 FLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 436 ~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
. +....++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+|+|+|+|+|++|+|+
T Consensus 330 ~--~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~ 401 (582)
T 3b5x_A 330 N--GKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC 401 (582)
T ss_pred C--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE
Confidence 1 111112235689999999999753 25799999999999999999999999999999999999999999984
No 6
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.6e-51 Score=449.09 Aligned_cols=390 Identities=21% Similarity=0.288 Sum_probs=336.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhch-hh---hHHH----HHHHHHHHHHHHHHHHHHHHH
Q 010471 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR-EE---AMVF----HKSSRFLVLLCVTSGIFSGLR 191 (510)
Q Consensus 120 l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~-~~---~~~~----~~~~~~l~~l~~~~~~~~~i~ 191 (510)
+++++++.+++++.++.+++++++.+++.+..|+++...++.... .+ ...+ ......+.++.++..++.+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (578)
T 4a82_A 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (578)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999988877754321 11 1111 111112223344556677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010471 192 SGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSW 271 (510)
Q Consensus 192 ~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~ 271 (510)
.+.....+.++..++|.++|+|++++|++||+++++|++++|+++|++.+++.+...+..++..++.+++++++++.++|
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 161 (578)
T 4a82_A 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDV 161 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 88888999999999999999999999999999999999999999999999998888777788888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q 010471 272 PLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRES 351 (510)
Q Consensus 272 ~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~ 351 (510)
++++++++.+|++.++...+.++.++..++.++..++.++.+.|+++|+++||+|+.|+.+.++|++..++..+...+..
T Consensus 162 ~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 241 (578)
T 4a82_A 162 KLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241 (578)
T ss_dssp TTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888888888888999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 010471 352 MAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLL 431 (510)
Q Consensus 352 ~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~ 431 (510)
+..+.......++..+..++++++|++++..|.+++|++++++.|...+..|+..+...+..+.++..+++|+.++++.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~ 321 (578)
T 4a82_A 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDED 321 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 77777777777777777888899999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 432 PSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 432 ~e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
++.++..+........++|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|+
T Consensus 322 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~ 399 (578)
T 4a82_A 322 YDIKNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 399 (578)
T ss_dssp CSSCCCTTCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEE
T ss_pred CcccCCCCccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEE
Confidence 7643222222223345789999999999853 36799999999999999999999999999999999999999999984
No 7
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.3e-50 Score=440.35 Aligned_cols=391 Identities=23% Similarity=0.350 Sum_probs=337.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 117 WIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR-EEAMVFHKSSRFLVLLCVTSGIFSGLRSGCF 195 (510)
Q Consensus 117 ~~~l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~ 195 (510)
++.+++++++.+++++.++.++++.++.+++.+..|+++...++.... .+..........+.++.++..++.+++.+..
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (582)
T 3b60_A 10 WQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCI 89 (582)
T ss_dssp CHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366788899999999999989999999999998899888777754321 1211111111112334455667778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010471 196 SIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTL 275 (510)
Q Consensus 196 ~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~l 275 (510)
...+.++..++|.++|+|++++|++||+++++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|++++
T Consensus 90 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 169 (582)
T 3b60_A 90 SWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSI 169 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 276 SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG 355 (510)
Q Consensus 276 i~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (510)
++++++|++.++...+.++.++..++.++..++.++.+.|+++|+++||+|+.|+.+.++|++..++..+...+..+..+
T Consensus 170 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (582)
T 3b60_A 170 ILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS 249 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888888888888899999999999999999999999999999999999999999988877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 010471 356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ 435 (510)
Q Consensus 356 ~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~ 435 (510)
.......++..+..++++++|++++..|.+++|++++++.+...+..|+..+...+..+.++..+.+|+.++++.+++.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 329 (582)
T 3b60_A 250 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKD 329 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 77777777777777888999999999999999999999999999999999999999999999999999999999876543
Q ss_pred CCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 436 FLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 436 ~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
. ++...++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+|+|+|+|+|++|+|+
T Consensus 330 ~--~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~ 401 (582)
T 3b60_A 330 E--GKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 401 (582)
T ss_dssp C--CCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEE
T ss_pred C--CCCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEE
Confidence 1 111112235689999999999743 25799999999999999999999999999999999999999999984
No 8
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3.5e-49 Score=463.79 Aligned_cols=392 Identities=27% Similarity=0.388 Sum_probs=332.2
Q ss_pred HHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchhh-----------------h----HHHHHHHHH
Q 010471 119 ALSRMWNLIG-RDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREE-----------------A----MVFHKSSRF 176 (510)
Q Consensus 119 ~l~~l~~~~~-~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~~-----------------~----~~~~~~~~~ 176 (510)
.++++++|.. ++++.++.+++++++.++.....|.+++..++.....+ . .........
T Consensus 34 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (1284)
T 3g5u_A 34 SVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYY 113 (1284)
T ss_dssp TTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHHHHH
Confidence 3566777774 46777888888888888877777777666553211000 0 001111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCchhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 010471 177 LVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNS 256 (510)
Q Consensus 177 l~~l~~~~~~~~~i~~~~~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~ 256 (510)
+.++.++..++.+++.++....+.++..++|.++|++++++|++|||++++|++++|+++|++.+++.+...+..++..+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~ 193 (1284)
T 3g5u_A 114 YTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAM 193 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566677888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHH
Q 010471 257 LQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRY 336 (510)
Q Consensus 257 ~~~i~~li~l~~~s~~l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~ 336 (510)
+++++.+++++.++|++++++++.+|++.++..++.++.++..++.++..++.++.+.|+++|+++||+|+.|+.+.++|
T Consensus 194 ~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~ 273 (1284)
T 3g5u_A 194 ATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERY 273 (1284)
T ss_dssp HHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHH
Confidence 99999999999999999999999999999988888888889888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 337 KIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQ 416 (510)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~ 416 (510)
++..++..+...+.....+.......++..+..++++|+|++++..|.+++|++++++.+......++..+...+..+.+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (1284)
T 3g5u_A 274 NNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFAN 353 (1284)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888777777777777777778888899999999999999999998887777788888899999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCC-CCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHH
Q 010471 417 SIGATEKVFQLIDLLPSNQFL-SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFV 495 (510)
Q Consensus 417 ~~~a~~rl~eil~~~~e~~~~-~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~ 495 (510)
+..+++|++++++.+|+.+.. +++..+.+..++|+|+||+|+||++++.++|+|+||+|++||++|||||||||||||+
T Consensus 354 ~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~ 433 (1284)
T 3g5u_A 354 ARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTV 433 (1284)
T ss_dssp HHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHH
Confidence 999999999999987764321 1222233456899999999999876556899999999999999999999999999999
Q ss_pred HHHhcccCCCCceeC
Q 010471 496 NLLLRLYEPSDGQVC 510 (510)
Q Consensus 496 kLL~g~y~p~sG~I~ 510 (510)
++|+|+|+|++|+|+
T Consensus 434 ~ll~g~~~~~~G~i~ 448 (1284)
T 3g5u_A 434 QLMQRLYDPLDGMVS 448 (1284)
T ss_dssp HHTTTSSCCSEEEEE
T ss_pred HHHhCCCCCCCeEEE
Confidence 999999999999984
No 9
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.6e-47 Score=447.75 Aligned_cols=391 Identities=20% Similarity=0.252 Sum_probs=310.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc--hhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ--REE-AMVFHKSSRFLVLLCVTSGIFSGLRSGCFS 196 (510)
Q Consensus 120 l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~--~~~-~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~ 196 (510)
+.+++.+.+++++.++.++++.++.+......+.++...+.... ..+ ...........+++.++.+++.+++.++..
T Consensus 740 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~ 819 (1321)
T 4f4c_A 740 LFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMG 819 (1321)
T ss_dssp HHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888888887777777766655555555554443211 111 011111122233455566778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccc--cCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 010471 197 IANIVLVKRLRETLYSALLFQDVYFFDT--EAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLT 274 (510)
Q Consensus 197 ~~~~~i~~~lr~~l~~~ll~lp~~ff~~--~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~l~ 274 (510)
..+.++..++|.++|++++++|++|||+ +++|++++|+++|++.+++.+...+..++..++.+++.++++++++|+++
T Consensus 820 ~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~ 899 (1321)
T 4f4c_A 820 IASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMA 899 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHHH
Confidence 9999999999999999999999999987 57999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 275 LSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAY 354 (510)
Q Consensus 275 li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (510)
+++++++|++.+...++.++.++...+.++..++....+.|+++|+++||+|+.|+.+.++|.+..++..+...+.....
T Consensus 900 lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 979 (1321)
T 4f4c_A 900 LLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQ 979 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998887776666555444455556667788888999999999999999999999999999999988888877666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 010471 355 GLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKY--VLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP 432 (510)
Q Consensus 355 ~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~ 432 (510)
+........+..+..++++++|+.++..|..+.+.+..+ +.+......++..+...+..+.++..+.+|++++++.++
T Consensus 980 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~ 1059 (1321)
T 4f4c_A 980 GLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKIS 1059 (1321)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcc
Confidence 666666666666777788899999999988777655433 222332334555667788889999999999999999887
Q ss_pred CCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 433 SNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 433 e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
+.+.........+..|+|+|+||+|+||++++.+||+|+||+|+|||+|||||+||||||||++||+|||+|++|+|+
T Consensus 1060 ~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~ 1137 (1321)
T 4f4c_A 1060 KIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIF 1137 (1321)
T ss_dssp SSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEE
T ss_pred cCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEE
Confidence 754333223334567899999999999987777899999999999999999999999999999999999999999984
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.1e-43 Score=414.81 Aligned_cols=391 Identities=24% Similarity=0.305 Sum_probs=321.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhchh---h--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE---E--AMVFHKSSRFLVLLCVTSGIFSGLRSGC 194 (510)
Q Consensus 120 l~~l~~~~~~~~~~l~~~~l~~i~~~l~~l~~P~~~~~~i~~~~~~---~--~~~~~~~~~~l~~l~~~~~~~~~i~~~~ 194 (510)
+++++++.+++++.++.++++.++.+.+....|.++...+...... + ..........+.++.++..++.+++.+.
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 772 (1284)
T 3g5u_A 693 FWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFT 772 (1284)
T ss_dssp TTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777788888888888888887777766666665554221110 0 0111111122333445556667788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccc--cCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 010471 195 FSIANIVLVKRLRETLYSALLFQDVYFFDT--EAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWP 272 (510)
Q Consensus 195 ~~~~~~~i~~~lr~~l~~~ll~lp~~ff~~--~~~G~lisrl~~D~~~i~~~~~~~l~~l~~~~~~~i~~li~l~~~s~~ 272 (510)
+...+.++..++|.++|++++++|++|||+ +++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|+
T Consensus 773 ~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~ 852 (1284)
T 3g5u_A 773 FGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQ 852 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 899999999999999999999999999995 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 010471 273 LTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESM 352 (510)
Q Consensus 273 l~li~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tvk~f~~e~~~~~~~~~~~~~~~~~~~~~~~ 352 (510)
+++++++.+|++++...+..++.++...+.++..++.+..+.|+++|+++||+|+.|+.+.++|++..++..+...+...
T Consensus 853 l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~ 932 (1284)
T 3g5u_A 853 LTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAH 932 (1284)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888877777777777777777778888899999999999999999999999999999998888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 010471 353 AYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP 432 (510)
Q Consensus 353 ~~~~~~~~~~~l~~~~~v~~l~~g~~lv~~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~ 432 (510)
..+....+...+..+..++++|+|++++..|.++.|.++++..+......++..+......+.++..+.+|+.++++.+|
T Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~ 1012 (1284)
T 3g5u_A 933 VFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTP 1012 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 77777777777777788888999999999999999999988888777777777777667777889999999999999877
Q ss_pred CCCCCC-CCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 433 SNQFLS-EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 433 e~~~~~-~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
+.+... .+..+.+..+.|+|+||+|+||++++.++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|+
T Consensus 1013 ~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~ 1091 (1284)
T 3g5u_A 1013 EIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVF 1091 (1284)
T ss_dssp SSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEE
T ss_pred cccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 644221 122233446889999999999876556799999999999999999999999999999999999999999984
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.82 E-value=1.8e-21 Score=194.64 Aligned_cols=98 Identities=29% Similarity=0.434 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCc
Q 010471 411 LSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSG 490 (510)
Q Consensus 411 ~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSG 490 (510)
...++++..+++|++++++.+++..............+.|+|+||+|+|+++ .++|+|+||+|++||++|||||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~--~~vL~~isl~i~~Ge~vaivG~sGsG 92 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADG--RETLQDVSFTVMPGQTLALVGPSGAG 92 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTT--CEEEEEEEEEECTTCEEEEESSSCHH
T ss_pred chhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCC--CceeeeeeEEEcCCCEEEEECCCCch
Confidence 3455677789999999998766533222211222345789999999999743 57999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCceeC
Q 010471 491 KSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 491 KSTL~kLL~g~y~p~sG~I~ 510 (510)
||||+++|+|+|+|++|+|+
T Consensus 93 KSTLl~ll~gl~~p~~G~I~ 112 (306)
T 3nh6_A 93 KSTILRLLFRFYDISSGCIR 112 (306)
T ss_dssp HHHHHHHHTTSSCCSEEEEE
T ss_pred HHHHHHHHHcCCCCCCcEEE
Confidence 99999999999999999984
No 12
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.68 E-value=4e-19 Score=177.22 Aligned_cols=118 Identities=15% Similarity=0.145 Sum_probs=96.0
Q ss_pred cCccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccCCCccccEEEEeeeEECCC
Q 010471 382 IGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPS 461 (510)
Q Consensus 382 ~g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~ 461 (510)
.+..+-+.+.+|+.+..+ ..++..++..+..+.++..+.+|+.++++.+++.... .. ......+.|+++||+|+|+
T Consensus 37 ~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~-~~-~~~~~~~~i~~~~vs~~y~- 112 (305)
T 2v9p_A 37 LAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATG-EG-SWKSILTFFNYQNIELITF- 112 (305)
T ss_dssp HTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCS-SC-CTHHHHHHHHHTTCCHHHH-
T ss_pred HhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC-CC-cccccCCeEEEEEEEEEcC-
Confidence 345666788888888766 4788899999999999999999999999875542211 11 1112234699999999996
Q ss_pred CCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 462 RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 462 ~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
.++|+|+||+|++||++|||||||||||||+++|+|+| +|+|
T Consensus 113 ---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I 154 (305)
T 2v9p_A 113 ---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV 154 (305)
T ss_dssp ---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE
T ss_pred ---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE
Confidence 36999999999999999999999999999999999999 8987
No 13
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.66 E-value=5.4e-17 Score=157.75 Aligned_cols=62 Identities=45% Similarity=0.753 Sum_probs=56.9
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.+|+++||+|+|+++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~ 67 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 579999999999532 25699999999999999999999999999999999999999999984
No 14
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.65 E-value=9.5e-17 Score=158.13 Aligned_cols=64 Identities=44% Similarity=0.779 Sum_probs=57.9
Q ss_pred cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.+.|+++||+|+|+++++.++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~ 77 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVL 77 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE
Confidence 3579999999999752235799999999999999999999999999999999999999999984
No 15
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.64 E-value=1.2e-16 Score=153.66 Aligned_cols=62 Identities=24% Similarity=0.557 Sum_probs=57.2
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
+.|+++||+|+|+++ ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 66 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 66 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEE
Confidence 479999999999742 35799999999999999999999999999999999999999999983
No 16
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.64 E-value=6.5e-17 Score=156.03 Aligned_cols=61 Identities=38% Similarity=0.579 Sum_probs=55.7
Q ss_pred EEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++||+|+|++++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~ 63 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVY 63 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEE
Confidence 78999999997432 24699999999999999999999999999999999999999999983
No 17
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.64 E-value=1.4e-16 Score=156.94 Aligned_cols=60 Identities=27% Similarity=0.496 Sum_probs=56.0
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+|+|+++ .++|+|+||+|++||++|||||||||||||+|+|+|+++|++|+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~ 66 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEE
Confidence 59999999999743 4599999999999999999999999999999999999999999984
No 18
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.63 E-value=1.3e-16 Score=154.04 Aligned_cols=61 Identities=30% Similarity=0.544 Sum_probs=56.2
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+|+|+++ ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~ 63 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA 63 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 48999999999632 35799999999999999999999999999999999999999999983
No 19
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.63 E-value=1.9e-16 Score=153.60 Aligned_cols=59 Identities=32% Similarity=0.653 Sum_probs=55.0
Q ss_pred EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++||+|+|++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 60 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEE
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 789999999953 25799999999999999999999999999999999999999999983
No 20
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.61 E-value=2.6e-16 Score=160.28 Aligned_cols=64 Identities=30% Similarity=0.511 Sum_probs=57.2
Q ss_pred cccEEEEeeeEECCCCC-CCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 447 MGHVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~-~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
+..|+++||+++|+++. +.++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~ 86 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVL 86 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEE
Confidence 34699999999997432 24699999999999999999999999999999999999999999984
No 21
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.61 E-value=3.2e-16 Score=150.11 Aligned_cols=59 Identities=36% Similarity=0.507 Sum_probs=55.3
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~ 62 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVF 62 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEE
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 4899999999963 4699999999999999999999999999999999999999999983
No 22
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.60 E-value=5.1e-16 Score=152.00 Aligned_cols=62 Identities=32% Similarity=0.658 Sum_probs=56.0
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
+.|+++||+|+|++++.+++|+|+||+|++||++||+||||||||||+|+|+|+++| +|+|.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~ 77 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIK 77 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEE
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEE
Confidence 469999999999753224699999999999999999999999999999999999998 89983
No 23
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.60 E-value=3.9e-16 Score=151.09 Aligned_cols=59 Identities=17% Similarity=0.427 Sum_probs=55.4
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 64 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 4999999999963 4699999999999999999999999999999999999999999983
No 24
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.60 E-value=5.2e-16 Score=152.40 Aligned_cols=59 Identities=34% Similarity=0.600 Sum_probs=55.7
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ +++|+|+||+|++||++|||||||||||||+|+|+|+++|++|+|.
T Consensus 11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~ 69 (266)
T 4g1u_C 11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECH 69 (266)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEE
T ss_pred eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE
Confidence 5999999999963 4699999999999999999999999999999999999999999983
No 25
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.60 E-value=5.1e-16 Score=153.46 Aligned_cols=66 Identities=23% Similarity=0.284 Sum_probs=56.4
Q ss_pred cCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 442 KLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 442 ~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+..+..|+++||+++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus 14 ~~~~~~~~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~ 79 (279)
T 2ihy_A 14 VPRGSHMLIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVN 79 (279)
T ss_dssp -----CEEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred CCCCCCceEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEE
Confidence 33333346999999999963 4699999999999999999999999999999999999999999983
No 26
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.59 E-value=6.3e-16 Score=146.84 Aligned_cols=59 Identities=27% Similarity=0.564 Sum_probs=55.3
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
..|+++||+++|++ ++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus 9 ~~l~~~~ls~~y~~----~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~ 67 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK----PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 67 (214)
T ss_dssp CEEEEEEEEEESSS----EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred ceEEEEEEEEEeCC----eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE
Confidence 36999999999952 699999999999999999999999999999999999999999983
No 27
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.59 E-value=5e-16 Score=152.17 Aligned_cols=59 Identities=31% Similarity=0.501 Sum_probs=55.5
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~ 82 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEII 82 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEE
Confidence 5999999999953 4699999999999999999999999999999999999999999983
No 28
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.59 E-value=6.1e-16 Score=151.26 Aligned_cols=59 Identities=27% Similarity=0.491 Sum_probs=55.4
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~ 65 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 65 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 4999999999963 4699999999999999999999999999999999999999999983
No 29
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.59 E-value=6.5e-16 Score=150.78 Aligned_cols=61 Identities=30% Similarity=0.515 Sum_probs=56.3
Q ss_pred cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.+.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus 13 ~~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~ 73 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT 73 (256)
T ss_dssp -CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred CCeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 357999999999953 4699999999999999999999999999999999999999999983
No 30
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.58 E-value=6.5e-16 Score=151.45 Aligned_cols=59 Identities=34% Similarity=0.590 Sum_probs=55.3
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~ 64 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 64 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 4999999999953 4699999999999999999999999999999999999999999983
No 31
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.57 E-value=1.2e-15 Score=149.85 Aligned_cols=61 Identities=33% Similarity=0.561 Sum_probs=55.1
Q ss_pred EEEEeeeEECCCCCC--CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRPT--VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~--~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++||+|+|+.+.. +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~ 65 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVL 65 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE
Confidence 899999999962111 4699999999999999999999999999999999999999999983
No 32
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.57 E-value=1.5e-15 Score=148.12 Aligned_cols=60 Identities=25% Similarity=0.562 Sum_probs=55.5
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~ 63 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 4899999999962 24699999999999999999999999999999999999999999983
No 33
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.57 E-value=8.2e-16 Score=152.71 Aligned_cols=80 Identities=24% Similarity=0.421 Sum_probs=50.8
Q ss_pred HHHHhhcCCCCCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 423 KVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 423 rl~eil~~~~e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
|+.++++.++++. . . .......+.|+++||+|+| +++|+|+||+|++||++||+||||||||||+|+|+|++
T Consensus 17 ~~~~~~~~~~~~~-~-~-~~~~~~~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 17 GFGELFEKAKQNN-N-N-RKTSNGDDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp HHHHHHHHCC--------------------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred HHHHHhccccccc-c-c-ccccCCCceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 6667766554322 1 1 1112234579999999964 35999999999999999999999999999999999999
Q ss_pred CCCCceeC
Q 010471 503 EPSDGQVC 510 (510)
Q Consensus 503 ~p~sG~I~ 510 (510)
+|++|+|.
T Consensus 89 ~p~~G~I~ 96 (290)
T 2bbs_A 89 EPSEGKIK 96 (290)
T ss_dssp CEEEEEEE
T ss_pred CCCCcEEE
Confidence 99999983
No 34
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.56 E-value=1.2e-15 Score=148.56 Aligned_cols=59 Identities=27% Similarity=0.401 Sum_probs=55.0
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc--cCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~--y~p~sG~I~ 510 (510)
.|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+|+|+|+ ++|++|+|.
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~ 63 (250)
T 2d2e_A 3 QLEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEIL 63 (250)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEE
T ss_pred eEEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEE
Confidence 4899999999963 4699999999999999999999999999999999999 899999983
No 35
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.55 E-value=1.9e-15 Score=153.68 Aligned_cols=59 Identities=27% Similarity=0.617 Sum_probs=55.5
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~ 62 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEIS 62 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEE
Confidence 5899999999953 4699999999999999999999999999999999999999999984
No 36
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.55 E-value=3.2e-15 Score=152.06 Aligned_cols=61 Identities=33% Similarity=0.572 Sum_probs=56.2
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
..|+++||+++|+++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus 13 ~~l~~~~l~~~y~g~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~ 73 (355)
T 1z47_A 13 MTIEFVGVEKIYPGG--ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW 73 (355)
T ss_dssp EEEEEEEEEECCTTS--TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred ceEEEEEEEEEEcCC--CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEE
Confidence 469999999999422 4699999999999999999999999999999999999999999983
No 37
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.55 E-value=2.3e-15 Score=154.21 Aligned_cols=59 Identities=31% Similarity=0.471 Sum_probs=55.5
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus 3 ~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~ 61 (381)
T 3rlf_A 3 SVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61 (381)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEE
Confidence 4899999999963 4699999999999999999999999999999999999999999984
No 38
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.54 E-value=2e-15 Score=148.40 Aligned_cols=60 Identities=32% Similarity=0.426 Sum_probs=54.9
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc--cCCCCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~--y~p~sG~I~ 510 (510)
..|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+|+|+|+ ++|++|+|.
T Consensus 19 ~~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~ 80 (267)
T 2zu0_C 19 HMLSIKDLHVSVED---KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVE 80 (267)
T ss_dssp -CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEE
T ss_pred ceEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEE
Confidence 35999999999953 4699999999999999999999999999999999999 689999983
No 39
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.54 E-value=4.5e-15 Score=152.96 Aligned_cols=63 Identities=27% Similarity=0.543 Sum_probs=57.2
Q ss_pred ccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 446 ~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
..+.|+++||+|+|++. +.++|+|+||+|++||.++|+||||||||||+++|+|+++ ++|+|+
T Consensus 16 ~~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~ 78 (390)
T 3gd7_A 16 SGGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQ 78 (390)
T ss_dssp SSCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEE
T ss_pred CCCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEE
Confidence 34689999999999743 3579999999999999999999999999999999999998 899984
No 40
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.52 E-value=5.7e-15 Score=150.72 Aligned_cols=59 Identities=32% Similarity=0.614 Sum_probs=55.2
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|.+ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~ 61 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY 61 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEE
Confidence 4899999999953 4699999999999999999999999999999999999999999983
No 41
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.52 E-value=5.4e-15 Score=150.75 Aligned_cols=59 Identities=29% Similarity=0.575 Sum_probs=55.2
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~ 61 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIY 61 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEE
Confidence 4899999999953 4699999999999999999999999999999999999999999984
No 42
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.51 E-value=6.7e-15 Score=150.72 Aligned_cols=59 Identities=29% Similarity=0.568 Sum_probs=55.5
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~ 69 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 69 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEE
Confidence 5999999999953 4699999999999999999999999999999999999999999984
No 43
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.51 E-value=7.5e-15 Score=150.58 Aligned_cols=59 Identities=29% Similarity=0.510 Sum_probs=55.2
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~ 61 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61 (372)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEE
Confidence 4899999999953 4699999999999999999999999999999999999999999984
No 44
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.50 E-value=5.1e-15 Score=150.88 Aligned_cols=59 Identities=32% Similarity=0.514 Sum_probs=55.1
Q ss_pred cEEEEeeeEECCCCCCCC--ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVP--ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~--vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.|+++||+++|++ .+ +|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~ 63 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEE
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Confidence 4899999999953 46 99999999999999999999999999999999999999999983
No 45
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.48 E-value=1.2e-14 Score=142.22 Aligned_cols=59 Identities=27% Similarity=0.470 Sum_probs=52.9
Q ss_pred EEEEeeeEECCCC-CCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~-~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
|+++||+++|+++ ..+++|+|+||+|+ ||++||+||||||||||+|+|+|++ |++|+|.
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~ 61 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIF 61 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEE
Confidence 7899999999631 01469999999999 9999999999999999999999999 9999983
No 46
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.47 E-value=1.2e-17 Score=171.39 Aligned_cols=134 Identities=13% Similarity=0.142 Sum_probs=91.8
Q ss_pred HHHHHHHHHhc-CccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccC-CCcccc
Q 010471 372 AVLLGGMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKL-QRLMGH 449 (510)
Q Consensus 372 ~l~~g~~lv~~-g~is~G~l~af~~~~~~~~~~~~~l~~~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~~-~~~~~~ 449 (510)
+.+.|++.+.. |.++.|++.+|+.+...+..+ .+....+.+..+..+.+|+.+++ +|+.+........ ....+.
T Consensus 51 v~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~ 126 (361)
T 2gza_A 51 CERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTR 126 (361)
T ss_dssp EEETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCC
T ss_pred EEECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCC
Confidence 34567777776 899999999998776655433 12111122222334567888887 3332211100000 111234
Q ss_pred E---------EEEeeeEE---CCCCCCCCcc---------ccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCce
Q 010471 450 V---------QFVNISFH---YPSRPTVPIL---------NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508 (510)
Q Consensus 450 I---------~f~nVsF~---Y~~~~~~~vL---------~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~ 508 (510)
+ +|+||+|+ |++. ++++| +++|++|++|+.++|+|+||||||||+++|+|+|+|++|.
T Consensus 127 itl~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~ 205 (361)
T 2gza_A 127 RTLEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRL 205 (361)
T ss_dssp CCHHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCE
T ss_pred CCHHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceE
Confidence 5 99999999 9742 23566 9999999999999999999999999999999999999998
Q ss_pred eC
Q 010471 509 VC 510 (510)
Q Consensus 509 I~ 510 (510)
|+
T Consensus 206 I~ 207 (361)
T 2gza_A 206 IT 207 (361)
T ss_dssp EE
T ss_pred EE
Confidence 73
No 47
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.37 E-value=2.7e-13 Score=153.15 Aligned_cols=61 Identities=30% Similarity=0.598 Sum_probs=56.6
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
-|+++||+|+|+++ ++++|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.
T Consensus 671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~ 731 (986)
T 2iw3_A 671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731 (986)
T ss_dssp EEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEE
T ss_pred eEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 49999999999753 25799999999999999999999999999999999999999999983
No 48
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.36 E-value=2.3e-16 Score=159.73 Aligned_cols=118 Identities=13% Similarity=0.193 Sum_probs=80.0
Q ss_pred ccCHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccC-CCccccEE---------E
Q 010471 384 QVSPEQLTKYVLYCEWLIYATWRMVD-NLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKL-QRLMGHVQ---------F 452 (510)
Q Consensus 384 ~is~G~l~af~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~rl~eil~~~~e~~~~~~~~~~-~~~~~~I~---------f 452 (510)
.++.|++.+++.+...+..+ .+.. ..+.+..+..+.+|+.++++.+.... ....... ....+.++ |
T Consensus 75 ~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~~~-~~~~~~ir~~~~~~i~l~~l~~~g~~ 151 (330)
T 2pt7_A 75 AFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTVND-ETISISIRIPSKTTYPHSFFEEQGFY 151 (330)
T ss_dssp GGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSSST-TCCEEEEECCCCCCCCHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCccCC-CCceEEEeCCCCCCCCHHHHHhCCCc
Confidence 68999999888776554432 1111 11112222334568888776433211 1001000 11234566 8
Q ss_pred EeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 453 ~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
+||+| | .++++++|+++++|+.++|+|+||||||||+++|+|+++|++|.|+
T Consensus 152 ~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~ 203 (330)
T 2pt7_A 152 NLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIIS 203 (330)
T ss_dssp TTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEE
T ss_pred Cchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEE
Confidence 89999 8 2599999999999999999999999999999999999999999874
No 49
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.23 E-value=1.7e-13 Score=123.71 Aligned_cols=57 Identities=19% Similarity=0.110 Sum_probs=49.9
Q ss_pred EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
++.+|++++|.+ ..+++++||+|++|++++|+||||||||||+|+|+|+. |++|+|.
T Consensus 8 ~~~~~~~~~~g~---~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~ 64 (158)
T 1htw_A 8 IPDEFSMLRFGK---KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVK 64 (158)
T ss_dssp ECSHHHHHHHHH---HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCC
T ss_pred cCCHHHHHHHHH---HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEE
Confidence 334567778842 46999999999999999999999999999999999999 9999984
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.22 E-value=5e-12 Score=136.06 Aligned_cols=57 Identities=28% Similarity=0.319 Sum_probs=49.5
Q ss_pred EEE-EeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 450 VQF-VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 450 I~f-~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
-++ +||+++|++. ..+|+|+| +|++||++||||+||||||||+|+|+|+++|++|++
T Consensus 21 ~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~ 78 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN--AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGD 78 (538)
T ss_dssp ---CCCEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred hhHhcCcEEEECCc--cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcc
Confidence 455 5999999642 25899999 999999999999999999999999999999999984
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.18 E-value=9.3e-12 Score=135.50 Aligned_cols=54 Identities=26% Similarity=0.326 Sum_probs=49.9
Q ss_pred EeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 453 ~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
+||+++|+++ ..+|+|+| +|++||++||||+||||||||+|+|+|+++|++|++
T Consensus 95 ~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~ 148 (607)
T 3bk7_A 95 EDCVHRYGVN--AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCED 148 (607)
T ss_dssp GSEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTT
T ss_pred CCeEEEECCC--CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCcc
Confidence 9999999642 25999999 999999999999999999999999999999999984
No 52
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.16 E-value=1.9e-11 Score=131.57 Aligned_cols=58 Identities=34% Similarity=0.490 Sum_probs=53.9
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.++++|++++|.+ ..|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~ 344 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIE 344 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCC
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 5999999999953 369999999999999999999999999999999999999999984
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.14 E-value=2.9e-11 Score=131.61 Aligned_cols=58 Identities=36% Similarity=0.498 Sum_probs=54.0
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~ 414 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE 414 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCC
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 5999999999953 369999999999999999999999999999999999999999984
No 54
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.11 E-value=3.8e-11 Score=128.98 Aligned_cols=59 Identities=22% Similarity=0.316 Sum_probs=53.9
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
..++++|++.+|.+ ..|++.|++|++||++||+|+||||||||+++|+|+++|++|+|.
T Consensus 268 ~~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 326 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVT 326 (538)
T ss_dssp EEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEE
T ss_pred ceEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 36899999999953 368888999999999999999999999999999999999999983
No 55
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.06 E-value=1.6e-12 Score=130.37 Aligned_cols=81 Identities=20% Similarity=0.210 Sum_probs=61.6
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccccceEE-----------------------e
Q 010471 419 GATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLT-----------------------I 475 (510)
Q Consensus 419 ~a~~rl~eil~~~~e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~nislt-----------------------I 475 (510)
.++.++.+....+.+++ +........+.|+++||++.|. ++++++++. +
T Consensus 16 ~~~~~l~~~~~~~~~~~---~~~~l~~~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (312)
T 3aez_A 16 RQWRALRMSTPLALTEE---ELVGLRGLGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDR 87 (312)
T ss_dssp HHHHGGGTTCCCCCCHH---HHHTTCCTTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSS
T ss_pred HHHHHHHhcCCCCCCHH---HHHhccCCCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCC
Confidence 45566665555443322 1112233456799999999993 578887775 8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG 507 (510)
++|+++||+|+||||||||+++|+|+++|++|
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G 119 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDH 119 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCC
Confidence 99999999999999999999999999999877
No 56
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.06 E-value=1.3e-11 Score=129.28 Aligned_cols=59 Identities=22% Similarity=0.268 Sum_probs=54.7
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
..++++||++.|+. +..+|+++ |+|++||+++|+|+||||||||+++|+|+++|++|.|
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i 188 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV 188 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEE
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEE
Confidence 46899999999963 25699999 9999999999999999999999999999999999987
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.04 E-value=8.6e-11 Score=127.74 Aligned_cols=53 Identities=26% Similarity=0.432 Sum_probs=47.6
Q ss_pred eeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 454 nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
|++++|.+. ...|++++ ++++||++|||||||||||||+|+|+|+++|++|+|
T Consensus 82 ~~~~~Y~~~--~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 82 HVTHRYSAN--SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp TEEEECSTT--SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred CeEEEECCC--ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 678999643 45788887 699999999999999999999999999999999987
No 58
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.97 E-value=2.6e-10 Score=120.07 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=47.0
Q ss_pred EEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
++.+++..+ ..+|+|+||+|++ |++||+||||||||||+++|+|+++|++|+|.
T Consensus 8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~ 61 (483)
T 3euj_A 8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLN 61 (483)
T ss_dssp EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCC
T ss_pred ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEE
Confidence 455555543 2489999999999 99999999999999999999999999999984
No 59
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.95 E-value=7.1e-11 Score=120.03 Aligned_cols=59 Identities=19% Similarity=0.141 Sum_probs=54.0
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
..++.+||++.|+. +..+++++ |+|.+||++||+|+||||||||+++|+|+.+|+.|.|
T Consensus 44 ~~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i 102 (347)
T 2obl_A 44 DPLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVL 102 (347)
T ss_dssp CSTTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEE
T ss_pred CCeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEE
Confidence 35889999999963 25699999 9999999999999999999999999999999999976
No 60
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.95 E-value=2.1e-10 Score=124.66 Aligned_cols=56 Identities=30% Similarity=0.568 Sum_probs=50.4
Q ss_pred EEeeeEECCCCCCCCccccceEEeeCC-----CEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 452 FVNISFHYPSRPTVPILNHVCLTIEAN-----EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 452 f~nVsF~Y~~~~~~~vL~nisltI~~G-----e~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
.++++|+|++. ..+++|+||++++| |++||+|+||||||||+++|+|+.+|++|+.
T Consensus 349 ~~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~ 409 (608)
T 3j16_B 349 SASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD 409 (608)
T ss_dssp SSSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC
T ss_pred ccceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC
Confidence 36889999753 45899999999999 8899999999999999999999999999963
No 61
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.95 E-value=9.5e-12 Score=131.06 Aligned_cols=53 Identities=21% Similarity=0.205 Sum_probs=49.4
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc-e-e
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-Q-V 509 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG-~-I 509 (510)
..|+++||+|+|+ |+||++++||+++|+||||||||||+|+|+|++.|++| + |
T Consensus 117 ~mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI 171 (460)
T 2npi_A 117 TMKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPL 171 (460)
T ss_dssp THHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCE
T ss_pred chhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeE
Confidence 4588999999993 69999999999999999999999999999999999999 7 6
No 62
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.94 E-value=1.8e-11 Score=122.69 Aligned_cols=59 Identities=22% Similarity=0.344 Sum_probs=54.5
Q ss_pred ccccEEEEeeeEECCCCCCCCccccceEEe-------------------eCCCEEEEEcCCCCcHHHHHHHHhcccC--C
Q 010471 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTI-------------------EANEVVAIVGLSGSGKSTFVNLLLRLYE--P 504 (510)
Q Consensus 446 ~~~~I~f~nVsF~Y~~~~~~~vL~nisltI-------------------~~Ge~vAIVG~SGSGKSTL~kLL~g~y~--p 504 (510)
..+.|+++||++.|. ++++++|+++ ++|+++||+|+||||||||+++|+|++. |
T Consensus 34 ~~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~ 108 (308)
T 1sq5_A 34 INEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWP 108 (308)
T ss_dssp HCTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTST
T ss_pred CccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCC
Confidence 346799999999992 5999999998 9999999999999999999999999999 9
Q ss_pred CCcee
Q 010471 505 SDGQV 509 (510)
Q Consensus 505 ~sG~I 509 (510)
++|+|
T Consensus 109 ~~G~i 113 (308)
T 1sq5_A 109 EHRRV 113 (308)
T ss_dssp TCCCE
T ss_pred CCCeE
Confidence 99987
No 63
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.92 E-value=1.5e-09 Score=122.88 Aligned_cols=50 Identities=24% Similarity=0.353 Sum_probs=45.8
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 500 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g 500 (510)
..|+..|++++|++ +.+|+|+||+|++||++||+|+||||||||+|+|+|
T Consensus 434 ~~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 46888899999964 469999999999999999999999999999999984
No 64
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.89 E-value=6e-10 Score=123.20 Aligned_cols=45 Identities=29% Similarity=0.496 Sum_probs=34.2
Q ss_pred CCccccceEEeeCCCEEEEEcCCCCcHHHHH---------------------HHHhcccCCCCcee
Q 010471 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFV---------------------NLLLRLYEPSDGQV 509 (510)
Q Consensus 465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~---------------------kLL~g~y~p~sG~I 509 (510)
..+|+||||+|++||++|||||||||||||+ +++.++..|+.|.|
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i 96 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAI 96 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEE
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccce
Confidence 4699999999999999999999999999998 89999999997655
No 65
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.87 E-value=2.3e-10 Score=118.64 Aligned_cols=46 Identities=37% Similarity=0.522 Sum_probs=43.8
Q ss_pred CCccccceEEeeCCC--------------------EEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 465 VPILNHVCLTIEANE--------------------VVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 465 ~~vL~nisltI~~Ge--------------------~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
+.+|+|||++|++|+ .+||||+||||||||+|+|+|+++|++|+|.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~ 101 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAK 101 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCC
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEE
Confidence 358999999999999 9999999999999999999999999999874
No 66
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.81 E-value=3.3e-10 Score=109.87 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=35.1
Q ss_pred ccEEEEee-eEECCCCCCCCccccceEEeeC---CCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 448 GHVQFVNI-SFHYPSRPTVPILNHVCLTIEA---NEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 448 ~~I~f~nV-sF~Y~~~~~~~vL~nisltI~~---Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
..++++|| +|+|.+ +.++|+|+||+|++ |++++|+|+|||||||+.++|++.
T Consensus 16 ~~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 16 ALLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp ------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 36999999 999932 35799999999999 999999999999999999999883
No 67
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.76 E-value=1.2e-10 Score=118.11 Aligned_cols=58 Identities=21% Similarity=0.212 Sum_probs=52.1
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
.|+.+|++++|.+ +.+|+++|+++++|++++|+|++|||||||++.|+|++.|++|+|
T Consensus 29 ~ie~~~~~~~~~~---~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v 86 (337)
T 2qm8_A 29 LAESRRADHRAAV---RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKV 86 (337)
T ss_dssp HHTCSSHHHHHHH---HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred HHeeCCcccccCh---HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEE
Confidence 3667788888842 469999999999999999999999999999999999999999987
No 68
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.73 E-value=2.1e-09 Score=107.13 Aligned_cols=43 Identities=26% Similarity=0.357 Sum_probs=40.0
Q ss_pred cccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 468 L~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
++++||++++|++++|||+|||||||+++.|+|+++|++|+|.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~ 132 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL 132 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 4678899999999999999999999999999999999999873
No 69
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.72 E-value=1.7e-09 Score=109.66 Aligned_cols=75 Identities=15% Similarity=0.142 Sum_probs=58.9
Q ss_pred HHHHHHhhcCCCCCCCCCCCccCCCccccEEEEeeeEECCCCCCCCccc--------------cceEEeeCCCEEEEEcC
Q 010471 421 TEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILN--------------HVCLTIEANEVVAIVGL 486 (510)
Q Consensus 421 ~~rl~eil~~~~e~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~--------------nisltI~~Ge~vAIVG~ 486 (510)
.||.+++++.++. ++..+....+.|+|+||+|.||.+ +.+|+ |++++|.+||+++|||+
T Consensus 110 ~ER~faLl~v~~v-----n~~~pe~~~~ri~Fe~ltp~yP~e--r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~ 182 (422)
T 3ice_A 110 GERYFALLKVNEV-----NFDKPENARNKILFENLTPLHANS--RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAP 182 (422)
T ss_dssp SCCSEEEEEEEEE-----SSSCHHHHTTSCCTTTSCEESCCS--BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECC
T ss_pred cchHHHHhccCcc-----cCCChhhhcCCceeccccccCCCC--ccccccCCCCcccccceeeeeeeeecCCcEEEEecC
Confidence 4566666654332 112223346789999999999964 67999 99999999999999999
Q ss_pred CCCcHHHHHHHHhccc
Q 010471 487 SGSGKSTFVNLLLRLY 502 (510)
Q Consensus 487 SGSGKSTL~kLL~g~y 502 (510)
||||||||+++|+|+.
T Consensus 183 sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 183 PKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SSSSHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHH
Confidence 9999999999999864
No 70
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.69 E-value=2.8e-09 Score=114.44 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=43.4
Q ss_pred CCccccceE-EeeCCCEEEEEcCCCCcHHHHHHH--HhcccCCCCceeC
Q 010471 465 VPILNHVCL-TIEANEVVAIVGLSGSGKSTFVNL--LLRLYEPSDGQVC 510 (510)
Q Consensus 465 ~~vL~nisl-tI~~Ge~vAIVG~SGSGKSTL~kL--L~g~y~p~sG~I~ 510 (510)
.++|+|+|+ +|++||.++|+|+||||||||+++ +.|+++|++|.|+
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~ 73 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVF 73 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEE
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 579999999 999999999999999999999999 7899999999873
No 71
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.66 E-value=3e-09 Score=108.94 Aligned_cols=43 Identities=28% Similarity=0.403 Sum_probs=40.3
Q ss_pred ccccceEEeeC--CCEEEEEcCCCCcHHHHHHHHhcccCCCC----cee
Q 010471 467 ILNHVCLTIEA--NEVVAIVGLSGSGKSTFVNLLLRLYEPSD----GQV 509 (510)
Q Consensus 467 vL~nisltI~~--Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s----G~I 509 (510)
+.+.|+++|++ |+++||||+||||||||+++|+|+|+|++ |+|
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i 205 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGRE 205 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHH
Confidence 46789999999 99999999999999999999999999999 765
No 72
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.65 E-value=3.1e-09 Score=110.16 Aligned_cols=50 Identities=24% Similarity=0.336 Sum_probs=40.3
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCE--EEEEcCCCCcHHHHHHHHhccc
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~--vAIVG~SGSGKSTL~kLL~g~y 502 (510)
..++.++ +++|++ .+ |+|+||++++|+. +||||+||||||||+++|+|+.
T Consensus 15 ~~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 15 RTVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp --CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred ceEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 3566667 888964 35 9999999999999 9999999999999999999985
No 73
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.64 E-value=4.9e-09 Score=106.72 Aligned_cols=42 Identities=26% Similarity=0.382 Sum_probs=39.2
Q ss_pred ccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 469 ~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
+++||++++|++++|||+|||||||+++.|+|+++|++|+|.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~ 189 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL 189 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEE
Confidence 468889999999999999999999999999999999999873
No 74
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.64 E-value=5.1e-09 Score=110.05 Aligned_cols=43 Identities=28% Similarity=0.367 Sum_probs=40.4
Q ss_pred cccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 468 L~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
-+|+||++++|++++|||+|||||||++++|+|++.|++|+|.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~ 325 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVM 325 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEE
Confidence 3689999999999999999999999999999999999999873
No 75
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.60 E-value=1.9e-08 Score=104.42 Aligned_cols=52 Identities=31% Similarity=0.307 Sum_probs=40.1
Q ss_pred cccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507 (510)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG 507 (510)
.+.|+++||+++|++ ..+++|+||+| +|||+||||||||++.|+|...|..|
T Consensus 9 ~~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~ 60 (418)
T 2qag_C 9 EGYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE 60 (418)
T ss_dssp ------CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC
T ss_pred cCcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC
Confidence 356999999999963 46999999998 99999999999999999999875443
No 76
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.59 E-value=1.3e-08 Score=112.49 Aligned_cols=35 Identities=46% Similarity=0.603 Sum_probs=32.7
Q ss_pred CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 499 (510)
Q Consensus 465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~ 499 (510)
.++|+||||+|++||++||+||||||||||+++++
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 46999999999999999999999999999998764
No 77
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.58 E-value=7.2e-09 Score=106.33 Aligned_cols=42 Identities=19% Similarity=0.370 Sum_probs=38.5
Q ss_pred CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC-Ccee
Q 010471 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQV 509 (510)
Q Consensus 466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~-sG~I 509 (510)
++|++++ +++|+.++|||||||||||++++|+|+|+|+ +|+|
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I 168 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHI 168 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEE
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEE
Confidence 3677776 8999999999999999999999999999998 8987
No 78
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.54 E-value=1.6e-08 Score=103.06 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=48.5
Q ss_pred EeeeEECCCCCCCCccccceE-------EeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC-Ccee
Q 010471 453 VNISFHYPSRPTVPILNHVCL-------TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQV 509 (510)
Q Consensus 453 ~nVsF~Y~~~~~~~vL~nisl-------tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~-sG~I 509 (510)
.+++|+|... ..+.|+++.+ ...+|+.++|+|||||||||++++|+|+++|+ +|.|
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i 155 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHI 155 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEE
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEE
Confidence 5888998654 4678999887 78899999999999999999999999999997 5654
No 79
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.52 E-value=2.2e-08 Score=96.01 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=42.0
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHh--cccCCCCce
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL--RLYEPSDGQ 508 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~--g~y~p~sG~ 508 (510)
.++.+++++.|++-+ .+|.+ .|++||.++|+||||||||||++.|+ ++.++.+|.
T Consensus 6 ~~~~~~i~tg~~~lD--~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~ 62 (251)
T 2ehv_A 6 YQPVRRVKSGIPGFD--ELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPG 62 (251)
T ss_dssp --CCCEECCSCTTTG--GGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCE
T ss_pred ccccceeecCCHhHH--HHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeE
Confidence 477788888886432 25544 79999999999999999999999999 664555554
No 80
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.52 E-value=2e-08 Score=112.46 Aligned_cols=47 Identities=26% Similarity=0.451 Sum_probs=41.7
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHH-Hhccc
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL-LLRLY 502 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kL-L~g~y 502 (510)
..|+++|+++. +|+||||+|++||++||+|+||||||||++. |.|+.
T Consensus 501 ~~L~v~~l~~~--------~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 501 GWLELNGVTRN--------NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp CEEEEEEEEET--------TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred ceEEEEeeeec--------ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 46999999862 6999999999999999999999999999996 76654
No 81
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.50 E-value=4.5e-09 Score=109.29 Aligned_cols=56 Identities=16% Similarity=0.280 Sum_probs=44.9
Q ss_pred EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
++++|++|.|+. ..+|+++ + .++|+.++|+|||||||||+++.|+|+++|++|+|.
T Consensus 144 ~~l~~Lg~~~~~---~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~ 199 (418)
T 1p9r_A 144 LDLHSLGMTAHN---HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNIL 199 (418)
T ss_dssp CCGGGSCCCHHH---HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEE
T ss_pred CCHHHcCCCHHH---HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEE
Confidence 445556555531 3467777 4 389999999999999999999999999999999873
No 82
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.50 E-value=7.7e-09 Score=112.84 Aligned_cols=58 Identities=28% Similarity=0.432 Sum_probs=33.8
Q ss_pred cEEEEeeeEECCCCCCCCccccc----------eEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-CCceeC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHV----------CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQVC 510 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~ni----------sltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p-~sG~I~ 510 (510)
.|+++|+++.|++. .+++|+.+ ++++|. +||||+||||||||+++|+|++.| ++|+|+
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt 78 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVT 78 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CC
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEE
Confidence 58999999999642 23566555 477776 999999999999999999999989 799874
No 83
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.50 E-value=2e-08 Score=99.59 Aligned_cols=44 Identities=32% Similarity=0.378 Sum_probs=41.5
Q ss_pred CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc-ee
Q 010471 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QV 509 (510)
Q Consensus 466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG-~I 509 (510)
++|+++++.+++|+.++|+|+||||||||++.|++...|++| .|
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v 67 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKV 67 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCE
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeE
Confidence 489999999999999999999999999999999999999988 44
No 84
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.48 E-value=3.9e-08 Score=97.98 Aligned_cols=34 Identities=35% Similarity=0.525 Sum_probs=32.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
+|++++|||+|||||||+++.|+|+++|++|+|.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~ 134 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVM 134 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEE
Confidence 7899999999999999999999999999999873
No 85
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.47 E-value=1.9e-08 Score=107.30 Aligned_cols=45 Identities=29% Similarity=0.395 Sum_probs=42.5
Q ss_pred CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
.++++++++.+++|+.++|+|+|||||||+++.|+|+++|++|.|
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~gii 291 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVV 291 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEE
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEE
Confidence 347899999999999999999999999999999999999999986
No 86
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.41 E-value=6.5e-08 Score=96.33 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=31.3
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 473 ltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
+++.+|++++|+|+||||||||+++|+|+..|++|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~ 201 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 201 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccccccccee
Confidence 46778999999999999999999999999999999874
No 87
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.38 E-value=1.9e-07 Score=107.10 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=42.0
Q ss_pred ccEEEEe-----eeEECCCCCCCCccccceEEeeC-------CCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 448 GHVQFVN-----ISFHYPSRPTVPILNHVCLTIEA-------NEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 448 ~~I~f~n-----VsF~Y~~~~~~~vL~nisltI~~-------Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
+.|+++| |+++|+++ .+|++|++|++++ |+.++|+|||||||||++|.+ |+..
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~--~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD--DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCEEEEEECCCC------CC--CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred ceEEEEeccccEEEEEecCC--ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence 4699999 99999532 5799999999988 999999999999999999999 8764
No 88
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.38 E-value=1.6e-07 Score=104.48 Aligned_cols=58 Identities=24% Similarity=0.216 Sum_probs=48.8
Q ss_pred cccEEEEeeeEECCCC--CCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-CCCcee
Q 010471 447 MGHVQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQV 509 (510)
Q Consensus 447 ~~~I~f~nVsF~Y~~~--~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-p~sG~I 509 (510)
.+.|++++. +||-- .+..|++|+||+ |+.++|+|||||||||++|+++|+.. |+.|.+
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~ 608 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSF 608 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCce
Confidence 567999988 56631 235799999999 99999999999999999999999975 788864
No 89
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.35 E-value=1e-07 Score=96.68 Aligned_cols=44 Identities=27% Similarity=0.298 Sum_probs=37.2
Q ss_pred CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-CCCceeC
Q 010471 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQVC 510 (510)
Q Consensus 466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~-p~sG~I~ 510 (510)
.-++++++. .+|++++|+|+||||||||+|.|+|+.. |..|+|.
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~ 248 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVS 248 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC---
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCcc
Confidence 357788875 4899999999999999999999999999 9999873
No 90
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.34 E-value=5.8e-08 Score=96.70 Aligned_cols=38 Identities=18% Similarity=0.290 Sum_probs=26.5
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 473 ltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
+++.+|++++|+|+||+|||||+|.|+|+..|..|+|.
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~ 205 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 205 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccccccee
Confidence 56779999999999999999999999999999999873
No 91
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.32 E-value=1.2e-07 Score=95.36 Aligned_cols=37 Identities=30% Similarity=0.368 Sum_probs=34.2
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
..++|++++|||+|||||||+++.|+|+++|++|+|.
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~ 161 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVV 161 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEE
Confidence 3468999999999999999999999999999999873
No 92
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.29 E-value=4.2e-07 Score=102.63 Aligned_cols=44 Identities=30% Similarity=0.402 Sum_probs=39.0
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 499 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~ 499 (510)
..++++|++. .+|+||||+|++||++||+|+||||||||+++|+
T Consensus 646 ~~L~v~~l~~--------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 646 RQLTVVGARE--------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp SEEEEEEECS--------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred ceEEEecCcc--------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3699999851 3799999999999999999999999999999854
No 93
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.26 E-value=4e-07 Score=102.41 Aligned_cols=43 Identities=40% Similarity=0.519 Sum_probs=38.3
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 499 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~ 499 (510)
.++++|++. .+|+||||+|++||.+||+|+||||||||++.|+
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 588888851 3799999999999999999999999999999864
No 94
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.22 E-value=3.9e-07 Score=90.71 Aligned_cols=37 Identities=24% Similarity=0.254 Sum_probs=33.4
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCceeC
Q 010471 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQVC 510 (510)
Q Consensus 473 ltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I~ 510 (510)
+++.+|++++|+|+||||||||+|.|+ +.+|++|+|.
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~ 196 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVS 196 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC-
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccc
Confidence 355689999999999999999999999 9999999984
No 95
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.22 E-value=3.4e-07 Score=103.36 Aligned_cols=30 Identities=37% Similarity=0.557 Sum_probs=29.0
Q ss_pred CccccceEEeeCCCEEEEEcCCCCcHHHHH
Q 010471 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFV 495 (510)
Q Consensus 466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~ 495 (510)
..|+||||+|++|+.+||+|+||||||||+
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhH
Confidence 579999999999999999999999999997
No 96
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.21 E-value=3.3e-07 Score=95.05 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=34.4
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (510)
Q Consensus 467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p 504 (510)
+++|+||++++| +++|||+||||||||++.|.++..+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~ 86 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGG 86 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCC
Confidence 799999999999 9999999999999999999777754
No 97
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.16 E-value=2.5e-06 Score=96.74 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=49.3
Q ss_pred ccEEEEeeeEECCCC--CCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHH--------hcccCCCCce
Q 010471 448 GHVQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL--------LRLYEPSDGQ 508 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~--~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL--------~g~y~p~sG~ 508 (510)
+.|++++...-+-.. .+..|++|+||++++|+.++|+|||||||||++|.+ .|.|-|.++.
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~ 700 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESA 700 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEE
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccc
Confidence 468888865444321 135799999999999999999999999999999999 8888887653
No 98
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.09 E-value=6.1e-07 Score=91.87 Aligned_cols=37 Identities=27% Similarity=0.323 Sum_probs=35.2
Q ss_pred CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
.+|+++|+++++|+.++|+||+|||||||+++|+|.+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5899999999999999999999999999999999865
No 99
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.06 E-value=5.7e-07 Score=90.07 Aligned_cols=53 Identities=25% Similarity=0.330 Sum_probs=43.2
Q ss_pred eeeEECCCCCCCCccccceEEeeCCC------EEEEEcCCCCcHHHHHHHHhcccC--CCCcee
Q 010471 454 NISFHYPSRPTVPILNHVCLTIEANE------VVAIVGLSGSGKSTFVNLLLRLYE--PSDGQV 509 (510)
Q Consensus 454 nVsF~Y~~~~~~~vL~nisltI~~Ge------~vAIVG~SGSGKSTL~kLL~g~y~--p~sG~I 509 (510)
.+++.|.+ .+.|++++..+.+++ ++||+|+|||||||++++|.++++ |++|.+
T Consensus 65 ll~~~~~~---~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v 125 (321)
T 3tqc_A 65 LLSFYVTA---RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV 125 (321)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred HHHHhhcc---hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE
Confidence 34555632 358889999998887 999999999999999999999998 566664
No 100
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.05 E-value=4.8e-07 Score=89.75 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=47.2
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
.+.++|+++.|++. . ++++++ +|++++++|++||||||++..|++++.++.|+|
T Consensus 76 ~~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v 129 (295)
T 1ls1_A 76 ATVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRP 129 (295)
T ss_dssp HHHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 46788899999532 2 788998 999999999999999999999999999988876
No 101
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.03 E-value=7.1e-07 Score=81.36 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=33.5
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCce
Q 010471 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508 (510)
Q Consensus 472 sltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~ 508 (510)
++++++|+.++|+||+|||||||++.+++.+.|++|.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~ 68 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI 68 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC
Confidence 4677899999999999999999999999999887773
No 102
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.01 E-value=9.1e-07 Score=86.76 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=34.9
Q ss_pred CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (510)
Q Consensus 466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p 504 (510)
.+++++++++++| ++|+||+|||||||++.|+|.+.+
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC
Confidence 4899999999999 999999999999999999998876
No 103
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.01 E-value=1.1e-06 Score=88.19 Aligned_cols=43 Identities=19% Similarity=0.289 Sum_probs=38.4
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
+++++||++++|++++++|++||||||++..|++.+.++.|+|
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kV 136 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKV 136 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 4578888889999999999999999999999999999988876
No 104
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.98 E-value=2.5e-06 Score=79.29 Aligned_cols=31 Identities=32% Similarity=0.405 Sum_probs=24.5
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 472 sltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
.++-++|+.++|+|+|||||||++++|++.+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4677899999999999999999999998754
No 105
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.95 E-value=1.9e-06 Score=87.85 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=33.8
Q ss_pred CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhc--ccCCCCcee
Q 010471 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQV 509 (510)
Q Consensus 465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g--~y~p~sG~I 509 (510)
..+|+++++++| .|++||++|||||||++.|.| +.++.+|.+
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~v 67 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcc
Confidence 358999999999 999999999999999999999 777777754
No 106
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.95 E-value=3.2e-06 Score=94.56 Aligned_cols=52 Identities=19% Similarity=0.200 Sum_probs=41.9
Q ss_pred ccEEEEeeeEECCCC----CCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 448 GHVQFVNISFHYPSR----PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~----~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
+.|++++. ++|=- .+..|++|+||+ ++|+.++|+|||||||||++|+++|+.
T Consensus 576 ~~i~i~~~--rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 576 PGIRITEG--RHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SCEEEEEE--CCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEec--cccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 35777653 34410 135799999999 999999999999999999999999874
No 107
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.94 E-value=1.5e-06 Score=88.35 Aligned_cols=48 Identities=25% Similarity=0.329 Sum_probs=40.0
Q ss_pred EeeeEECCCCCCCCccccc-eEEeeCCCEEEEEcCCCCcHHHHHHHHhccc--CCCC
Q 010471 453 VNISFHYPSRPTVPILNHV-CLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSD 506 (510)
Q Consensus 453 ~nVsF~Y~~~~~~~vL~ni-sltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y--~p~s 506 (510)
+.+++.++ .|+++ +..|++|++++|+|+||||||||++.+++.+ +|++
T Consensus 111 ~~isTG~~------~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~ 161 (349)
T 1pzn_A 111 GRISTGSK------SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 161 (349)
T ss_dssp CEECCSCH------HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGG
T ss_pred CeecCCCH------HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhc
Confidence 45666553 45555 5899999999999999999999999999999 6766
No 108
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.94 E-value=2.3e-06 Score=75.92 Aligned_cols=35 Identities=23% Similarity=0.391 Sum_probs=31.8
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507 (510)
Q Consensus 467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG 507 (510)
+|+++ +|+.++|+|++|||||||++++++.+.+ +|
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g 64 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AG 64 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TT
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cC
Confidence 57777 8999999999999999999999999987 46
No 109
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.93 E-value=2.7e-06 Score=88.17 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=32.8
Q ss_pred cccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 468 L~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
-++++|+++.|+.++|||++|||||||++.|++.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 3799999999999999999999999999999998
No 110
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.93 E-value=2.7e-06 Score=96.23 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=41.4
Q ss_pred ccEEEEeeeEECC------CCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471 448 GHVQFVNISFHYP------SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 500 (510)
Q Consensus 448 ~~I~f~nVsF~Y~------~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g 500 (510)
+.|++++. ++| +..+..|++|+||++++|+.++|+|||||||||++|.+.+
T Consensus 639 ~~i~i~~~--rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 639 RKIVIKNG--RHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CEEEEEEE--CCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CcEEEEec--cchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 46777763 344 1124679999999999999999999999999999999864
No 111
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.91 E-value=1.9e-07 Score=94.34 Aligned_cols=58 Identities=19% Similarity=0.313 Sum_probs=47.7
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCC-------CEEEEEcCCCCcHHHHHHHHhccc----CCCCcee
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEAN-------EVVAIVGLSGSGKSTFVNLLLRLY----EPSDGQV 509 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~G-------e~vAIVG~SGSGKSTL~kLL~g~y----~p~sG~I 509 (510)
.++.++++..|.+ ..+++++++.|++| +.++|+||+|+|||||++++++.. .|.+|++
T Consensus 18 ~lr~~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~ 86 (334)
T 1in4_A 18 FLRPKSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPV 86 (334)
T ss_dssp TTSCSSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTT
T ss_pred HcCCccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechH
Confidence 3555567767742 35999999999987 899999999999999999999998 6777764
No 112
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.87 E-value=2.8e-06 Score=84.54 Aligned_cols=39 Identities=26% Similarity=0.437 Sum_probs=34.8
Q ss_pred ceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 471 isltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
++++.++|++++|||++||||||+++.|++++.++.|+|
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV 135 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSV 135 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEE
Confidence 445567899999999999999999999999999988876
No 113
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.85 E-value=3.6e-06 Score=81.06 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=42.8
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
..+++++...|.+ ..+++++++++++| ++|+||+|||||||++.+++...
T Consensus 25 ~~~l~~l~~~~~~---~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 25 KEELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp HHHHHHHHHHHHC---HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC
Confidence 3556788877742 35899999999999 99999999999999999999765
No 114
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.84 E-value=3.4e-06 Score=90.50 Aligned_cols=36 Identities=33% Similarity=0.334 Sum_probs=33.2
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc-ee
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QV 509 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG-~I 509 (510)
.+++|++++|+|+||||||||+++|+|.+.|++| +|
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i 401 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCV 401 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCE
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceE
Confidence 5789999999999999999999999999999987 44
No 115
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.82 E-value=4.3e-06 Score=81.84 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=41.6
Q ss_pred EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
-+++++...|.+ ..+++++++++++| ++|+||||||||||++.|++...
T Consensus 50 ~~l~~l~~~~~~---~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 50 EELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp HHHHHHHHHHHC---HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC
Confidence 345677777742 35899999999999 99999999999999999999875
No 116
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.76 E-value=2.8e-06 Score=91.03 Aligned_cols=53 Identities=13% Similarity=0.136 Sum_probs=42.3
Q ss_pred EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCce
Q 010471 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~ 508 (510)
++.+++++.|++- ..+|++ .+++|++++|+|+||||||||++.++|...|+ |+
T Consensus 258 ~~~~~l~~g~~~l--d~vL~g---~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~ 310 (525)
T 1tf7_A 258 SSNVRVSSGVVRL--DEMCGG---GFFKDSIILATGATGTGKTLLVSRFVENACAN-KE 310 (525)
T ss_dssp CCCCEECCSCHHH--HHHTTS---SEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC
T ss_pred cccceeecChHHH--HHHhCC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC
Confidence 4667777777521 125554 99999999999999999999999999999885 54
No 117
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.69 E-value=9.4e-06 Score=80.15 Aligned_cols=29 Identities=21% Similarity=0.140 Sum_probs=26.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~ 505 (510)
++++|||+|+||||||||+++|.++++++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 67899999999999999999999999763
No 118
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.61 E-value=8e-06 Score=82.58 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=39.2
Q ss_pred CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
.+++++++++++|++++|+|++|+||||+++.|++.+.+..|++
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v 87 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKV 87 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 58899999999999999999999999999999999887665543
No 119
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.59 E-value=1.8e-05 Score=78.30 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=30.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG 507 (510)
++|+++++||++||||||+++.|++.+.+++|
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G 134 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH 134 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 47999999999999999999999999999888
No 120
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.59 E-value=3.3e-05 Score=86.59 Aligned_cols=40 Identities=30% Similarity=0.505 Sum_probs=35.0
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHH
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFV 495 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~ 495 (510)
..|++++.. +.=|||||++||.|+.|+|.|.||||||||+
T Consensus 14 ~~I~i~gar--------~hNLkni~v~iP~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 14 GFVQVRGAR--------QHNLKDISVKVPRDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp TEEEEEEEC--------STTCCSEEEEEESSSEEEEESSTTSSHHHHH
T ss_pred CeEEEeecc--------ccCCCCeeEEecCCCEEEEECCCCCCHHHHH
Confidence 468888743 2359999999999999999999999999998
No 121
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.50 E-value=4.8e-05 Score=85.75 Aligned_cols=40 Identities=28% Similarity=0.445 Sum_probs=34.1
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHH
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFV 495 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~ 495 (510)
..|++++.. +.=|||||++||+++.|.|.|.||||||||+
T Consensus 22 ~~I~i~gar--------~hNLkni~v~iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 22 DKIIVKGAR--------AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp CEEEEEEEC--------SSSCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred ceEEEeccc--------cccCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence 457777632 2359999999999999999999999999997
No 122
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.49 E-value=4.9e-05 Score=85.96 Aligned_cols=40 Identities=28% Similarity=0.401 Sum_probs=34.2
Q ss_pred ccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHH
Q 010471 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFV 495 (510)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~ 495 (510)
..|++++.. +.=|||||++||+++.|.|.|.||||||||+
T Consensus 24 ~~I~i~gar--------~hNLkni~v~iP~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 24 DRLIVKGAR--------EHNLRSVDLDLPRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp CEEEEEEEC--------SSSCCSEEEEEESSSEEEEEESTTSSHHHHH
T ss_pred CcEEEeccc--------ccccCceeeeccCCCEEEEECCCCCcHHHHH
Confidence 457777632 2359999999999999999999999999997
No 123
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.46 E-value=4.5e-05 Score=69.96 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccCC
Q 010471 480 VVAIVGLSGSGKSTFVNLLLRLYEP 504 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~g~y~p 504 (510)
+++|||++|||||||++.+.|...|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC
Confidence 7999999999999999999998754
No 124
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.46 E-value=5.1e-05 Score=74.15 Aligned_cols=30 Identities=30% Similarity=0.307 Sum_probs=27.5
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
-+++|+.++|+|+||||||||++.+++...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 479999999999999999999999998665
No 125
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.45 E-value=5.7e-05 Score=77.86 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=28.3
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHH--HhcccCCCCc
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNL--LLRLYEPSDG 507 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kL--L~g~y~p~sG 507 (510)
-|++|+.++|+|+||||||||++. +.+..+|+.|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~G 209 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIG 209 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccC
Confidence 689999999999999999999994 4566666444
No 126
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.43 E-value=2.1e-05 Score=85.72 Aligned_cols=42 Identities=17% Similarity=0.251 Sum_probs=40.0
Q ss_pred CCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC
Q 010471 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506 (510)
Q Consensus 465 ~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s 506 (510)
..+++++++.+++|+.+.|+||||||||||++.|+++.++..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 469999999999999999999999999999999999998887
No 127
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.35 E-value=5.8e-05 Score=78.26 Aligned_cols=54 Identities=20% Similarity=0.240 Sum_probs=45.5
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
.+..++++..|.+. . ++++++ +|++++++|++||||||++..|++.+.++.|.|
T Consensus 76 ~~v~~~L~~~~~~~--~---~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~V 129 (425)
T 2ffh_A 76 ATVYEALKEALGGE--A---RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRP 129 (425)
T ss_dssp HHHHHHHHHHTTSS--C---CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred HHHHHHHHHHhCCC--c---ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 45666788888532 1 678888 899999999999999999999999999987776
No 128
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.34 E-value=5.9e-05 Score=76.44 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=29.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
+++.+|+|+|++|||||||++.|.|.+.|++|+|
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v 105 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKL 105 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeE
Confidence 4678999999999999999999999887776654
No 129
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.32 E-value=0.00013 Score=64.47 Aligned_cols=34 Identities=29% Similarity=0.576 Sum_probs=25.5
Q ss_pred ccceEEeeCCCEEEEEcCCCCcHHHHHHHHh-cccC
Q 010471 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLYE 503 (510)
Q Consensus 469 ~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~-g~y~ 503 (510)
++.++++++| .++|+||+||||||+++.|. .+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3344555554 89999999999999999886 4443
No 130
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.30 E-value=4.5e-05 Score=81.95 Aligned_cols=57 Identities=9% Similarity=0.192 Sum_probs=47.1
Q ss_pred cEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
.+-.++|..+|.+ ..+++++++++ +|+.+.|+||||||||||++.|++...+..|+|
T Consensus 83 i~G~~~vk~~i~~---~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i 139 (543)
T 3m6a_A 83 HHGLEKVKERILE---YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRI 139 (543)
T ss_dssp CSSCHHHHHHHHH---HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred hccHHHHHHHHHH---HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEE
Confidence 3556677777732 34788999998 899999999999999999999999998877765
No 131
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.24 E-value=2.8e-05 Score=79.25 Aligned_cols=52 Identities=29% Similarity=0.328 Sum_probs=36.5
Q ss_pred ccccEEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC
Q 010471 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506 (510)
Q Consensus 446 ~~~~I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~s 506 (510)
..+.|.++|++..|.. +.++++++++| +|||++|+|||||++.|.+.-.+..
T Consensus 14 ~~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~ 65 (361)
T 2qag_A 14 TPGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE 65 (361)
T ss_dssp -------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC---
T ss_pred CCceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCC
Confidence 3468999999999853 35899999987 9999999999999999987654433
No 132
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.21 E-value=5.4e-05 Score=74.95 Aligned_cols=55 Identities=22% Similarity=0.296 Sum_probs=44.1
Q ss_pred cEEEEeeeEECCCCCCCCcccc-ceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 449 HVQFVNISFHYPSRPTVPILNH-VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~n-isltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
.+..++++..|.+. . ++ ++++.+ |++++++|++|+||||++..|++.+.+..|++
T Consensus 74 ~~~~~~l~~~~~~~--~---~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v 129 (297)
T 1j8m_F 74 KIVYDELSNLFGGD--K---EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKV 129 (297)
T ss_dssp HHHHHHHHHHTTCS--C---CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHhccc--c---ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 35566777777532 1 56 888877 99999999999999999999999998877665
No 133
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.12 E-value=0.00015 Score=76.84 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=40.1
Q ss_pred EEEEeeeEECCCCCCCCccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
.+++++...|.+ ..+++++++++|+| +.|+||+|+|||||++.+++...
T Consensus 41 ~~l~~lv~~l~~---~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 41 EELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp HHHHHHHHHHHC---GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhc---hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence 345566655632 35899999999999 99999999999999999998764
No 134
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.06 E-value=0.00022 Score=71.69 Aligned_cols=30 Identities=27% Similarity=0.438 Sum_probs=27.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-ccCCCCcee
Q 010471 480 VVAIVGLSGSGKSTFVNLLLR-LYEPSDGQV 509 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~g-~y~p~sG~I 509 (510)
.+.|+||+|+||||+++.++| ++.|++|+|
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i 68 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRL 68 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC-
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeE
Confidence 399999999999999999999 899998865
No 135
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.93 E-value=0.0002 Score=68.88 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=26.2
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
..+++..+.|+|++||||||+++.|.+.+.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 455788999999999999999999988764
No 136
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.91 E-value=0.0003 Score=67.55 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=25.6
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
.+++++...++| +.|+||+|+||||+++.+++.+.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 456666666666 99999999999999999998764
No 137
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.90 E-value=0.00029 Score=71.32 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=32.0
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
=+++|+.+.|.||+|||||||+..+++...+..|.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 489999999999999999999999998887776654
No 138
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.74 E-value=0.00012 Score=73.60 Aligned_cols=43 Identities=16% Similarity=0.243 Sum_probs=37.8
Q ss_pred CCccccceEEeeCCCE--EEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471 465 VPILNHVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLYEPSDG 507 (510)
Q Consensus 465 ~~vL~nisltI~~Ge~--vAIVG~SGSGKSTL~kLL~g~y~p~sG 507 (510)
..++++++..|+.|+. +.+.||+|+||||+++.+++...+..|
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 3589999999999998 999999999999999999998655443
No 139
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.68 E-value=0.00062 Score=69.82 Aligned_cols=44 Identities=23% Similarity=0.196 Sum_probs=32.7
Q ss_pred CCccccceEEe---eCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 465 VPILNHVCLTI---EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 465 ~~vL~nisltI---~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
.+++-|+ +.. ..+.-++|+|+|||||||+++.|+..+.+..+.|
T Consensus 20 ~~v~~d~-~~~~~~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~ 66 (392)
T 4ag6_A 20 GLVLVDI-WKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRV 66 (392)
T ss_dssp CEEEECT-TCCBTTBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CeEEEec-ccCcCccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEE
Confidence 4555555 222 2677899999999999999999988776666554
No 140
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.66 E-value=0.00097 Score=69.53 Aligned_cols=24 Identities=46% Similarity=0.480 Sum_probs=22.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccc
Q 010471 479 EVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
-++||||+||+|||||++.|+|..
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999975
No 141
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.65 E-value=0.0011 Score=62.82 Aligned_cols=28 Identities=32% Similarity=0.389 Sum_probs=24.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDG 507 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~g~y~p~sG 507 (510)
+++|||++|+|||||++.|+|-..+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999997766655
No 142
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.63 E-value=0.0004 Score=74.03 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=30.7
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
.++++++++.+| .++|+|+||||||||++.|..+
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 568899999999 9999999999999999998554
No 143
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.59 E-value=0.00078 Score=75.67 Aligned_cols=32 Identities=13% Similarity=0.260 Sum_probs=29.2
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (510)
Q Consensus 473 ltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p 504 (510)
+.+++|+.+.|+||||||||||++.|++.+++
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 46899999999999999999999999998754
No 144
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.57 E-value=0.75 Score=49.33 Aligned_cols=10 Identities=20% Similarity=0.547 Sum_probs=4.8
Q ss_pred cccceEEeeC
Q 010471 468 LNHVCLTIEA 477 (510)
Q Consensus 468 L~nisltI~~ 477 (510)
++|++++-+.
T Consensus 342 ~~~v~~~y~~ 351 (578)
T 4a82_A 342 IDHVSFQYND 351 (578)
T ss_dssp EEEEEECSCS
T ss_pred EEEEEEEcCC
Confidence 4455554443
No 145
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.49 E-value=0.0013 Score=65.20 Aligned_cols=34 Identities=32% Similarity=0.307 Sum_probs=29.6
Q ss_pred CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 500 (510)
Q Consensus 466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g 500 (510)
..+++..+.+ .|+.++|+|+||+||||++..|.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 4677888888 789999999999999999987775
No 146
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.47 E-value=1.3 Score=47.67 Aligned_cols=14 Identities=7% Similarity=0.169 Sum_probs=9.7
Q ss_pred cEEEEeeeEECCCC
Q 010471 449 HVQFVNISFHYPSR 462 (510)
Q Consensus 449 ~I~f~nVsF~Y~~~ 462 (510)
.-.++||||+-+.+
T Consensus 356 ~~~l~~isl~i~~G 369 (587)
T 3qf4_A 356 DPVLSGVNFSVKPG 369 (587)
T ss_dssp CCSEEEEEEEECTT
T ss_pred CcceeceEEEEcCC
Confidence 34578999887643
No 147
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.44 E-value=0.0013 Score=69.65 Aligned_cols=40 Identities=25% Similarity=0.373 Sum_probs=33.0
Q ss_pred ccceEEeeCCCEEEEEcCCCCcHHHHHHHHhc--ccCCCCce
Q 010471 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQ 508 (510)
Q Consensus 469 ~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g--~y~p~sG~ 508 (510)
+.+++++.+|.-++|+|.|||||||+++.|.. +|.++.|+
T Consensus 158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~ 199 (512)
T 2ius_A 158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPED 199 (512)
T ss_dssp CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTT
T ss_pred CEEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCce
Confidence 35788899999999999999999999998765 56555454
No 148
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.40 E-value=0.0013 Score=66.89 Aligned_cols=24 Identities=38% Similarity=0.595 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccC
Q 010471 480 VVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
+++|||++|+|||||++.|.|...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 499999999999999999999765
No 149
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.38 E-value=0.0014 Score=64.35 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
.|..+.|+|+|||||||+++.|+.-+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999997543
No 150
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.26 E-value=0.0014 Score=66.24 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=26.6
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~ 505 (510)
-+++|+.+.|.|++|||||||+.-++.-....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~ 88 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAA 88 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 58999999999999999999987776544433
No 151
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.16 E-value=0.0013 Score=69.18 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=31.1
Q ss_pred CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
..++++++++|+| +.|+||+|+|||||++.+++-.
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 4788889999988 8899999999999999998754
No 152
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.15 E-value=0.0013 Score=68.33 Aligned_cols=33 Identities=30% Similarity=0.458 Sum_probs=29.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcccCCCCcee
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQV 509 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG~I 509 (510)
++.+++++|++||||||++.-|++.+.+..++|
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kV 128 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKV 128 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 578999999999999999999999888776654
No 153
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.02 E-value=0.0023 Score=63.09 Aligned_cols=31 Identities=16% Similarity=0.302 Sum_probs=27.3
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 473 ltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
+.+++++.+.|.||+|+||||+++.+++...
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 4568899999999999999999999998653
No 154
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.00 E-value=0.0032 Score=60.01 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
++-.+.|.|++||||||+++.|+.-|
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999997533
No 155
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.97 E-value=0.0026 Score=60.17 Aligned_cols=26 Identities=42% Similarity=0.604 Sum_probs=21.8
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLL 499 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~ 499 (510)
.+.+|+.+.++|++||||||++.+.+
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 34579999999999999999877654
No 156
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.0035 Score=56.69 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 478 NEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 478 Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
.-+++++|++|+|||||++-|.+-.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3489999999999999999888754
No 157
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.93 E-value=0.0032 Score=61.53 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 010471 479 EVVAIVGLSGSGKSTFVNLLLR 500 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~g 500 (510)
..|+|+|++||||||+++.|..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 158
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.92 E-value=0.0012 Score=69.02 Aligned_cols=42 Identities=10% Similarity=0.207 Sum_probs=36.1
Q ss_pred CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507 (510)
Q Consensus 466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG 507 (510)
+.|++++.-+++|+.+.|.|++|+|||||+.-+++-..+..|
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g 232 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN 232 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC
Confidence 468888878999999999999999999999988887665444
No 159
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.88 E-value=0.0042 Score=62.10 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=24.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
+++..+.|+||+|||||||...|+.-+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3567899999999999999999987663
No 160
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.88 E-value=0.0053 Score=56.66 Aligned_cols=33 Identities=33% Similarity=0.289 Sum_probs=26.4
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 500 (510)
Q Consensus 467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g 500 (510)
.++...+.+ .|..+.|+|+||||||||+.-|+.
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHT
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 566665554 688999999999999999976654
No 161
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.77 E-value=0.0031 Score=64.03 Aligned_cols=53 Identities=25% Similarity=0.300 Sum_probs=42.8
Q ss_pred cccEEEEeeeEECCCCCCCCccc-----------cceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 447 MGHVQFVNISFHYPSRPTVPILN-----------HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~-----------nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
.+.+.|++++--||.. +.-++ |.=+.|-+||+.+|+|++|+|||||++-|.+-
T Consensus 135 ~~r~~fe~l~Pi~P~~--R~~le~e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 135 NDRVNFDNLTPDYPRE--RFILETDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp -CCCCGGGSCEECCCS--BCCCCCSTTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred ccccccccCCCCCchh--hccccccchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHH
Confidence 4567788888888753 44566 77789999999999999999999999887763
No 162
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.73 E-value=0.0034 Score=61.59 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=25.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507 (510)
Q Consensus 478 Ge~vAIVG~SGSGKSTL~kLL~g~y~p~sG 507 (510)
...+.|+||+|+||||+++.+++...+.+|
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~ 76 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEE 76 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGG
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCc
Confidence 357999999999999999999998766554
No 163
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.58 E-value=0.0071 Score=55.80 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcc
Q 010471 479 EVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
=++++||++|+|||||++-+.+-
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999988764
No 164
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.50 E-value=0.0074 Score=56.32 Aligned_cols=27 Identities=11% Similarity=0.180 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
++..+.|+||+|+||||+++.+++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999876543
No 165
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.47 E-value=0.0075 Score=62.35 Aligned_cols=27 Identities=44% Similarity=0.578 Sum_probs=23.4
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 475 IEANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
=++.+.+.|+|+|||||||+++.|+.-
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 356789999999999999999998753
No 166
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.46 E-value=0.0079 Score=59.89 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=25.3
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
-+++|+.+.|.|++|||||||+.-++.-
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5899999999999999999999877654
No 167
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.44 E-value=0.0069 Score=60.90 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=25.5
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
-+++|+.+.|.|++|||||||+.-++.-
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999999887764
No 168
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.43 E-value=0.0041 Score=64.90 Aligned_cols=36 Identities=14% Similarity=0.311 Sum_probs=29.9
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
+++.+ ..+-+|++++|+|+||+|||||++.|.+-..
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 45555 6778999999999999999999998876443
No 169
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.37 E-value=0.0044 Score=57.46 Aligned_cols=25 Identities=36% Similarity=0.441 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 478 NEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 478 Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
.-+|+++|++|+|||||++-|.+-.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998764
No 170
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.37 E-value=0.0089 Score=53.31 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=22.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
..+..+.|+|++|+||||+++.+++.+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345779999999999999999887654
No 171
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.33 E-value=0.0083 Score=56.10 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcc
Q 010471 479 EVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
-+|++||++|+|||||++-|.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999988764
No 172
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.26 E-value=0.0092 Score=58.18 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=24.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
.++..+.|.||+|+||||+++.+++.+
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998755
No 173
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.22 E-value=0.0086 Score=55.50 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcc
Q 010471 479 EVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
.+++|+|++|+|||||++-|++-
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999877754
No 174
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.16 E-value=0.01 Score=53.91 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcc
Q 010471 479 EVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
=+++++|++|+|||||++-+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999888653
No 175
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.15 E-value=0.0048 Score=62.04 Aligned_cols=29 Identities=31% Similarity=0.534 Sum_probs=25.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p 504 (510)
++++.+.|.|++|+|||||++.+++..++
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999886644
No 176
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.14 E-value=0.01 Score=54.27 Aligned_cols=27 Identities=15% Similarity=0.194 Sum_probs=23.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471 479 EVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~g~y~p~ 505 (510)
+.+.|.|++|+|||||++.+++.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 789999999999999999998766433
No 177
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.10 E-value=0.01 Score=54.83 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 010471 480 VVAIVGLSGSGKSTFVNLLLR 500 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~g 500 (510)
++++||++|+|||||++-+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 799999999999999998875
No 178
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.09 E-value=0.011 Score=59.73 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 478 NEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 478 Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
.-++++||++|+|||||++.|.|-.
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999999865
No 179
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.09 E-value=0.011 Score=53.93 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=20.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLR 500 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g 500 (510)
+.=+++++|++|+|||||++-+.+
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHh
Confidence 345799999999999999988864
No 180
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.06 E-value=0.0073 Score=56.68 Aligned_cols=29 Identities=28% Similarity=0.500 Sum_probs=24.6
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
.++.+++.|+||.||||+|.++.|+.-|.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 35678899999999999999999986553
No 181
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.05 E-value=0.011 Score=56.94 Aligned_cols=22 Identities=41% Similarity=0.561 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 010471 480 VVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
++++||++|+|||||++.|+|-
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
No 182
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.02 E-value=0.012 Score=56.84 Aligned_cols=29 Identities=41% Similarity=0.483 Sum_probs=22.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 010471 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~g~y~p~sG 507 (510)
.++++||.+|+|||||++.|.|-.....|
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~ 128 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVG 128 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccC
Confidence 58999999999999999999986654433
No 183
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.01 E-value=0.011 Score=59.62 Aligned_cols=29 Identities=24% Similarity=0.501 Sum_probs=25.4
Q ss_pred CCC--EEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471 477 ANE--VVAIVGLSGSGKSTFVNLLLRLYEPS 505 (510)
Q Consensus 477 ~Ge--~vAIVG~SGSGKSTL~kLL~g~y~p~ 505 (510)
+|. .+.|+||+|+||||+++.+++...+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 446 89999999999999999999887665
No 184
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.00 E-value=0.011 Score=57.09 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 010471 480 VVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
++++||++|+|||||++.|++-
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999864
No 185
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.97 E-value=0.013 Score=54.57 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 010471 480 VVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
+|+|||++|+|||||++-+.+-
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999998864
No 186
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.91 E-value=0.011 Score=52.60 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=23.0
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
+.+..+.|+|++|+||||+++.+++..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 346678999999999999999888765
No 187
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.90 E-value=0.012 Score=53.39 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=24.3
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 500 (510)
Q Consensus 467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g 500 (510)
+++.+. -++.=+++++|++|+|||||++-+.+
T Consensus 20 ~~~~~~--~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 20 LFSRIF--GKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp GGGGTT--TTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred HHHHhc--cCCccEEEEECCCCCCHHHHHHHHHh
Confidence 555442 23455899999999999999998864
No 188
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.89 E-value=0.017 Score=50.09 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=24.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p 504 (510)
+.+.-+-|.|++|+|||++++.+......
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 45667999999999999999999876543
No 189
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.89 E-value=0.012 Score=54.73 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcc
Q 010471 479 EVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
-+++|||.+|+|||||++-+++-
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999776653
No 190
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.88 E-value=0.0043 Score=59.61 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=25.8
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
.+++++...++| +.|.||+|+||||+++.+++.
T Consensus 35 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 35 RYANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 344555555666 889999999999999999874
No 191
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.86 E-value=0.014 Score=56.48 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=24.5
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 475 IEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
++++.-+.|.||+|+||||+++.+++-.
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4577789999999999999999998754
No 192
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.73 E-value=0.012 Score=62.33 Aligned_cols=28 Identities=7% Similarity=0.031 Sum_probs=24.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
+.|-.+.++|.|||||||+.++|+.-+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 4677899999999999999999987554
No 193
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.63 E-value=0.0099 Score=58.87 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p 504 (510)
++..+.|.||+|+|||||++.+++....
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4568999999999999999999876543
No 194
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.63 E-value=0.015 Score=53.26 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=19.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc
Q 010471 478 NEVVAIVGLSGSGKSTFVNLLLR 500 (510)
Q Consensus 478 Ge~vAIVG~SGSGKSTL~kLL~g 500 (510)
.=+++++|++|+|||||++-+.+
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 34799999999999999977653
No 195
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.62 E-value=0.018 Score=54.74 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
+..-+.|.||+|+||||+++.+++-+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44568899999999999999998744
No 196
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.59 E-value=0.016 Score=52.97 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 010471 480 VVAIVGLSGSGKSTFVNLLLR 500 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~g 500 (510)
++++||++|+|||||++-+.+
T Consensus 31 ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhh
Confidence 689999999999999988764
No 197
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.57 E-value=0.018 Score=57.15 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=24.2
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLR 500 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g 500 (510)
-+++|+.+.|.|++|||||||+.-++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999999976654
No 198
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.55 E-value=0.023 Score=53.38 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.8
Q ss_pred eeCCCEEEEEcCCCCcHHHHHH
Q 010471 475 IEANEVVAIVGLSGSGKSTFVN 496 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL~k 496 (510)
+++|+.+-|.|++|+||||++.
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l 48 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHH
Confidence 7999999999999999999984
No 199
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.43 E-value=0.0084 Score=67.30 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=30.1
Q ss_pred cceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 470 nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
..++.+++|+.+.|+||+|||||||++.+++...
T Consensus 503 ~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 4567889999999999999999999999998654
No 200
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.26 E-value=0.019 Score=61.83 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
+|..+.|.|.|||||||+++.|...
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~ 419 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVT 419 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999764
No 201
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.26 E-value=0.025 Score=52.23 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=27.6
Q ss_pred ccccceEEeeCCC---EEEEEcCCCCcHHHHHHHHhcccC
Q 010471 467 ILNHVCLTIEANE---VVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 467 vL~nisltI~~Ge---~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
+++.+.-.+..|+ .+.|.|++|+||||+++.+++-+.
T Consensus 31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4444444445555 799999999999999999876553
No 202
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.23 E-value=0.015 Score=57.65 Aligned_cols=34 Identities=18% Similarity=0.203 Sum_probs=29.2
Q ss_pred CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 499 (510)
Q Consensus 466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~ 499 (510)
+-|+++.--+++|+.+.|.|++|+||||++.-++
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia 89 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQA 89 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 4577777668999999999999999999987665
No 203
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=94.21 E-value=0.021 Score=57.90 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
++..+++||++|+|||||+|.|.|-
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 5789999999999999999999986
No 204
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.20 E-value=7 Score=41.69 Aligned_cols=9 Identities=33% Similarity=0.674 Sum_probs=4.7
Q ss_pred EEeeeEECC
Q 010471 452 FVNISFHYP 460 (510)
Q Consensus 452 f~nVsF~Y~ 460 (510)
++||||+-+
T Consensus 359 l~~v~~~i~ 367 (582)
T 3b60_A 359 LRNINLKIP 367 (582)
T ss_dssp EEEEEEEEC
T ss_pred ccceeEEEc
Confidence 555555543
No 205
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.04 E-value=0.023 Score=61.50 Aligned_cols=26 Identities=35% Similarity=0.399 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
+|..+.|+|.|||||||+++.|...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999997643
No 206
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.96 E-value=0.031 Score=54.54 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 478 NEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 478 Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
+-++++||.+|+|||||++.|.|-..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCce
Confidence 34799999999999999999988653
No 207
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=93.93 E-value=0.022 Score=57.73 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
+|..+++||.+|+|||||+|.|.|-
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhh
Confidence 6789999999999999999999885
No 208
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.91 E-value=0.025 Score=57.01 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
++..+.|+||+|+||||+++.|++..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 44568899999999999999998754
No 209
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=93.89 E-value=0.026 Score=57.13 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=24.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~ 505 (510)
+-.++.|+|.+||||||++|-+--+|.|.
T Consensus 32 ~~~killlG~~~SGKST~~kq~~i~~~~~ 60 (362)
T 1zcb_A 32 RLVKILLLGAGESGKSTFLKQMRIIHGQD 60 (362)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHSCC
T ss_pred CccEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 34789999999999999999987677763
No 210
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.88 E-value=0.036 Score=55.94 Aligned_cols=34 Identities=26% Similarity=0.364 Sum_probs=27.6
Q ss_pred CccccceEE---eeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471 466 PILNHVCLT---IEANEVVAIVGLSGSGKSTFVNLLLR 500 (510)
Q Consensus 466 ~vL~nislt---I~~Ge~vAIVG~SGSGKSTL~kLL~g 500 (510)
+-|+.+ +. +++|+.+.|.|++|||||||+.-++.
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 346655 33 89999999999999999999976654
No 211
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.81 E-value=0.016 Score=60.14 Aligned_cols=24 Identities=42% Similarity=0.652 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccc
Q 010471 479 EVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
..+++||++|+||||++.-|++.+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999888765
No 212
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=93.77 E-value=0.0088 Score=54.50 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 010471 480 VVAIVGLSGSGKSTFVNLLLR 500 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~g 500 (510)
+|+++|++|+|||||++-|.+
T Consensus 35 ki~vvG~~~~GKSsli~~l~~ 55 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFAD 55 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999988775
No 213
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.70 E-value=0.033 Score=54.37 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
++..+.|.||+|+||||+++.+++.+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999998877654
No 214
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=92.69 E-value=0.013 Score=53.61 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=19.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc
Q 010471 478 NEVVAIVGLSGSGKSTFVNLLLR 500 (510)
Q Consensus 478 Ge~vAIVG~SGSGKSTL~kLL~g 500 (510)
.=+++++|++|+|||||++-+.+
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 34799999999999999977653
No 215
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.54 E-value=0.017 Score=57.55 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=29.5
Q ss_pred CccccceEEeeCC--CEEEEEcCCCCcHHHHHHHHhccc
Q 010471 466 PILNHVCLTIEAN--EVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 466 ~vL~nisltI~~G--e~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
.+++.+.-.+..| ..+.|.||+|+||||+++.+++.+
T Consensus 44 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 44 HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3666666666666 449999999999999999998764
No 216
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.52 E-value=0.038 Score=54.86 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=23.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
++..-+.|.||+|+||||+++.+++..
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 466789999999999999999998754
No 217
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.49 E-value=0.026 Score=48.85 Aligned_cols=27 Identities=19% Similarity=0.140 Sum_probs=22.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
+.+.-+-|.|++|+|||++++.+....
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 455679999999999999999998643
No 218
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.45 E-value=0.038 Score=54.80 Aligned_cols=28 Identities=29% Similarity=0.291 Sum_probs=24.8
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471 473 LTIEANEVVAIVGLSGSGKSTFVNLLLR 500 (510)
Q Consensus 473 ltI~~Ge~vAIVG~SGSGKSTL~kLL~g 500 (510)
--+++|..+.|.||+|||||||+.-++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3688999999999999999999987763
No 219
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.39 E-value=9.6 Score=40.59 Aligned_cols=10 Identities=30% Similarity=0.700 Sum_probs=5.5
Q ss_pred EEEeeeEECC
Q 010471 451 QFVNISFHYP 460 (510)
Q Consensus 451 ~f~nVsF~Y~ 460 (510)
.++||||+-+
T Consensus 358 ~l~~i~l~i~ 367 (582)
T 3b5x_A 358 ALSHVSFSIP 367 (582)
T ss_pred ccccceEEEC
Confidence 3556666554
No 220
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.38 E-value=0.04 Score=50.23 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 010471 480 VVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
.+.|.|++|+||||+++.+.+-
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988764
No 221
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=93.29 E-value=0.033 Score=56.05 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 010471 480 VVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
.+++||++|+|||||++-|.|-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~ 54 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGR 54 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTS
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999985
No 222
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.24 E-value=0.023 Score=59.25 Aligned_cols=36 Identities=25% Similarity=0.437 Sum_probs=29.4
Q ss_pred ccceEEeeCCCE--EEEEcCCCCcHHHHHHHHhcccCC
Q 010471 469 NHVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLYEP 504 (510)
Q Consensus 469 ~nisltI~~Ge~--vAIVG~SGSGKSTL~kLL~g~y~p 504 (510)
+.+.-.|..|+. +.|.||+|+||||+++.|.+....
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 555566667775 899999999999999999987654
No 223
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.20 E-value=0.036 Score=55.61 Aligned_cols=27 Identities=33% Similarity=0.566 Sum_probs=23.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
..+..+.|.||+|+||||+++.+++-.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 567789999999999999999988654
No 224
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=93.19 E-value=0.057 Score=53.31 Aligned_cols=33 Identities=30% Similarity=0.307 Sum_probs=26.0
Q ss_pred CccccceEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 499 (510)
Q Consensus 466 ~vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~ 499 (510)
..++..-+.+ .|.-+.|.|+||+||||++.-|.
T Consensus 136 ~~~H~~~v~~-~g~gvli~G~sG~GKStlal~l~ 168 (312)
T 1knx_A 136 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 168 (312)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred ceeEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 4677754444 68899999999999999996654
No 225
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.16 E-value=0.04 Score=58.94 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
.|..+.++|.+||||||+++.|...
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~ 395 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATM 395 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999864
No 226
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.15 E-value=11 Score=40.41 Aligned_cols=10 Identities=30% Similarity=0.607 Sum_probs=7.2
Q ss_pred EEEeeeEECC
Q 010471 451 QFVNISFHYP 460 (510)
Q Consensus 451 ~f~nVsF~Y~ 460 (510)
.++||||+-+
T Consensus 370 ~l~~isl~i~ 379 (598)
T 3qf4_B 370 VLKDITFHIK 379 (598)
T ss_dssp SCCSEEEECC
T ss_pred cccceEEEEc
Confidence 4678888765
No 227
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.14 E-value=0.038 Score=53.12 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=22.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
++...+-|.||+|+||||+++.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45567999999999999999998764
No 228
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.08 E-value=0.024 Score=63.28 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=26.1
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~ 505 (510)
.+..|+.+.++||+||||||++.++++...+.
T Consensus 105 ~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~ 136 (773)
T 2xau_A 105 LYQNNQIMVFVGETGSGKTTQIPQFVLFDEMP 136 (773)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHCG
T ss_pred HHhCCCeEEEECCCCCCHHHHHHHHHHHhccc
Confidence 35689999999999999999888886654443
No 229
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.08 E-value=0.04 Score=57.11 Aligned_cols=28 Identities=36% Similarity=0.630 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p 504 (510)
++.+++++|++|+||||++.-|+..+.-
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999888876643
No 230
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=93.08 E-value=0.032 Score=58.39 Aligned_cols=25 Identities=36% Similarity=0.407 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
.|=+|+|||++|+|||||++.|++-
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999874
No 231
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=92.94 E-value=0.049 Score=52.96 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 478 NEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 478 Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
+.-+-|+||+|+||||+++.+++..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999998765
No 232
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=92.89 E-value=0.051 Score=56.35 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 010471 480 VVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
++++||++|+|||||++-|+|-
T Consensus 177 ki~lvG~~nvGKSSLin~l~~~ 198 (436)
T 2hjg_A 177 QFCLIGRPNVGKSSLVNAMLGE 198 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 8999999999999999999874
No 233
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.87 E-value=0.049 Score=57.07 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
...++.+||.+||||||+++.|++-
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999764
No 234
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.86 E-value=0.05 Score=56.54 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=29.8
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
-|+++.--+++|+.+.|.|++|+||||++.-++.-.
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 466666558999999999999999999997766544
No 235
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=92.84 E-value=0.056 Score=54.41 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=23.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
++...+.|.||+|+||||+++.+++..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 466789999999999999999998754
No 236
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.81 E-value=0.053 Score=54.34 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=24.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
.+|..+-|.||+|+||||+++.+++...
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4577899999999999999999987654
No 237
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.81 E-value=0.046 Score=56.80 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 478 NEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 478 Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
+..+.|.||+|+|||||++.+++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998765
No 238
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.79 E-value=0.058 Score=53.39 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=22.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
.+..-+-|.||+|+|||++++.+++.
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 35667999999999999999999864
No 239
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.79 E-value=0.043 Score=58.33 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
....+.+||.+||||||+.+.|++.+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999997643
No 240
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.77 E-value=0.048 Score=50.49 Aligned_cols=29 Identities=17% Similarity=0.295 Sum_probs=25.6
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
.+|+...+.|.||.|+||||++..|++++
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 37777789999999999999999998876
No 241
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=92.76 E-value=0.055 Score=54.27 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=26.8
Q ss_pred ccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 469 ~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
+.+.++++---.|+|||.+|+|||||++.|.+-
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 445566666667999999999999999998864
No 242
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.69 E-value=0.058 Score=52.72 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
+-..+.|.||+|+|||+|++.+++-.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33567888999999999999998754
No 243
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=92.66 E-value=0.074 Score=50.79 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p 504 (510)
.+.-+-|.|++|+|||++++.+......
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~ 55 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSR 55 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTT
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCc
Confidence 3467889999999999999999877653
No 244
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.58 E-value=0.057 Score=54.34 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 478 NEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 478 Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
.-+++|+|+.|+||||+++-|++.+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999998887554
No 245
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=92.50 E-value=0.052 Score=58.38 Aligned_cols=33 Identities=42% Similarity=0.480 Sum_probs=26.0
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
+|++++ ++--+|+|||++|+|||||++.|.|--
T Consensus 30 ~L~~i~---~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 30 ILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp HHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHhcc---CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 565542 334579999999999999999999854
No 246
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=92.49 E-value=0.06 Score=59.32 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=23.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
+++=+|+|||++|+|||||++.|+|--
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355689999999999999999999853
No 247
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=92.49 E-value=13 Score=39.69 Aligned_cols=10 Identities=30% Similarity=0.590 Sum_probs=5.2
Q ss_pred EEEeeeEECC
Q 010471 451 QFVNISFHYP 460 (510)
Q Consensus 451 ~f~nVsF~Y~ 460 (510)
.++||||+-+
T Consensus 359 vl~~isl~i~ 368 (595)
T 2yl4_A 359 IFQDFSLSIP 368 (595)
T ss_dssp EEEEEEEEEC
T ss_pred cccceEEEEc
Confidence 3555555544
No 248
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=92.43 E-value=0.055 Score=57.92 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcc
Q 010471 479 EVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
-+|+|||..|+|||||++-|+|-
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~ 88 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQ 88 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999885
No 249
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.38 E-value=0.075 Score=55.37 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=27.7
Q ss_pred ceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 471 isltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
.=+.|-+|++++|+|++|+|||||+.-+.+-.
T Consensus 146 ~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~ 177 (482)
T 2ck3_D 146 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 177 (482)
T ss_dssp HHSCEETTCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cccccccCCeeeeecCCCCChHHHHHHHHHhh
Confidence 34688999999999999999999998777654
No 250
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.37 E-value=0.063 Score=54.28 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
++..+.|+||+|+||||+++.+++..
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 34568899999999999999998765
No 251
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=92.32 E-value=0.054 Score=56.87 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
.|=+|+|||++|+|||||++-|.+-
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4556999999999999999999875
No 252
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.29 E-value=0.081 Score=53.56 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=23.0
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLL 499 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~ 499 (510)
=+++|+.+.|.|++|||||||+.-++
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la 95 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIV 95 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHH
Confidence 47999999999999999999996554
No 253
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.29 E-value=0.043 Score=54.92 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=28.8
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
-|+.+.--+++|+.+.|.|++|+||||++.-++.-
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 45655556889999999999999999999776544
No 254
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=92.28 E-value=0.051 Score=53.76 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=20.1
Q ss_pred eeCCCEEEEEcCCCCcHHHHH-HHHh
Q 010471 475 IEANEVVAIVGLSGSGKSTFV-NLLL 499 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL~-kLL~ 499 (510)
+|+| .|-|.||+|||||||+ +++.
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~ 50 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVS 50 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHH
Confidence 5789 8999999999999995 4443
No 255
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.19 E-value=0.079 Score=52.22 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 478 NEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 478 Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
++-+.|.||+|+|||+|++.++...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999887643
No 256
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.12 E-value=0.074 Score=53.42 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 478 NEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 478 Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
+..+.|.||+|+||||+++.+++-.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999988653
No 257
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=92.12 E-value=0.068 Score=53.79 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=23.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
+++.-+.|.||+|+||||+++.+++..
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 456679999999999999999998754
No 258
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.03 E-value=0.071 Score=52.78 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 479 EVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
..+.|.||+|+||||+++.+++-..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999987543
No 259
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=91.97 E-value=0.065 Score=53.36 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 010471 480 VVAIVGLSGSGKSTFVNLLLR 500 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~g 500 (510)
+|+|||++|+|||||++-+.+
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~ 187 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKL 187 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCS
T ss_pred eEEEECCCCccHHHHHHHHhC
Confidence 799999999999999988764
No 260
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=91.92 E-value=0.086 Score=51.96 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=21.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLR 500 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g 500 (510)
..|..+.|.|+.|+|||||++-+++
T Consensus 29 ~~~~~v~i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 29 ENYPLTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred hcCCeEEEECCCcCCHHHHHHHHHH
Confidence 3468999999999999999987764
No 261
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*
Probab=91.83 E-value=0.06 Score=56.73 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=19.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHH
Q 010471 476 EANEVVAIVGLSGSGKSTFVNL 497 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kL 497 (510)
+.|+++.+.|+||||||||...
T Consensus 223 ~~g~~~~ffGlSGtGKTtLs~~ 244 (529)
T 1j3b_A 223 KEGDVAVFFGLSGTGKTTLSTD 244 (529)
T ss_dssp TTCCEEEEEECTTSCHHHHTCB
T ss_pred CCCcEEEEEccccCChhhHhhc
Confidence 6788999999999999998855
No 262
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=91.72 E-value=0.084 Score=56.18 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcc
Q 010471 479 EVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
=+|++||.+|+|||||++-+.+-
T Consensus 42 ~kV~lvG~~~vGKSSLl~~l~~~ 64 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQLIGE 64 (535)
T ss_dssp EEEEEESSSCSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999988763
No 263
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.65 E-value=0.09 Score=54.51 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccCC
Q 010471 480 VVAIVGLSGSGKSTFVNLLLRLYEP 504 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~g~y~p 504 (510)
-+.++||+|+||||+++.|++....
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred eEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 4779999999999999999987643
No 264
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=91.61 E-value=0.061 Score=52.79 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
++..+.|.||+|+||||+++.+...
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4467899999999999999998763
No 265
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.46 E-value=0.069 Score=56.39 Aligned_cols=25 Identities=40% Similarity=0.566 Sum_probs=20.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
+..+++|||+.|+||||++.-|+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999888843
No 266
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.34 E-value=0.11 Score=53.78 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=24.4
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
-+++-+-+-+.||.|||||++++.+++-.
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35666679999999999999999998743
No 267
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.18 E-value=0.11 Score=53.64 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=25.2
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
-+++-+-+-+.||.|||||++++.+++-.
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 46677889999999999999999998743
No 268
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.16 E-value=0.12 Score=52.65 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=23.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
.++.-+.|.||+|+|||++++.+++..
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356889999999999999999997653
No 269
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.16 E-value=0.11 Score=53.67 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=24.9
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
-+++-+-+-+.||.|||||+|++.+++-.
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 36677789999999999999999998743
No 270
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=91.13 E-value=0.098 Score=51.30 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=20.9
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471 475 IEANEVVAIVGLSGSGKSTFVNLLL 499 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL~kLL~ 499 (510)
.+..-+++++|++|+|||||++-+.
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~ 176 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYT 176 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHH
T ss_pred ccceeEEEEECCCCCChHHHHHHHH
Confidence 3445689999999999999997765
No 271
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=91.05 E-value=0.12 Score=53.73 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=24.0
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
++..-+.|.||+|+|||||++.+++..
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 566889999999999999999998765
No 272
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=90.95 E-value=0.096 Score=54.77 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=27.7
Q ss_pred ceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 471 isltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
.=+.+-+|++++|+|++|+|||||+.-|.+-.
T Consensus 158 ~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~ 189 (498)
T 1fx0_B 158 LLAPYRRGGKIGLFGGAGVGKTVLIMELINNI 189 (498)
T ss_dssp HHSCCCTTCCEEEEECSSSSHHHHHHHHHHHT
T ss_pred eecccccCCeEEeecCCCCCchHHHHHHHHHH
Confidence 34688999999999999999999998777654
No 273
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=90.94 E-value=0.11 Score=55.04 Aligned_cols=31 Identities=32% Similarity=0.353 Sum_probs=27.9
Q ss_pred ceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 471 isltI~~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
.=+.+-+|++.+|+|++|+|||+|+.-|++.
T Consensus 214 ~l~PigrGqr~~Ifg~~g~GKT~l~~~ia~~ 244 (578)
T 3gqb_A 214 VLFPVAMGGTAAIPGPFGSGKSVTQQSLAKW 244 (578)
T ss_dssp TTSCEETTCEEEECCCTTSCHHHHHHHHHHH
T ss_pred hcccccCCCEEeeeCCCCccHHHHHHHHHhc
Confidence 3468999999999999999999999988875
No 274
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=90.91 E-value=0.1 Score=54.88 Aligned_cols=21 Identities=43% Similarity=0.749 Sum_probs=18.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHH
Q 010471 476 EANEVVAIVGLSGSGKSTFVN 496 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~k 496 (510)
+.|+++.+.|+||+|||||..
T Consensus 239 ~~g~~~lffGlSGtGKTTLs~ 259 (540)
T 2olr_A 239 EKGDVAVFFGLSGTGKTTLST 259 (540)
T ss_dssp TTSCEEEEECSTTSSHHHHHC
T ss_pred CCCCEEEEEccCCCCHHHHhc
Confidence 367899999999999999874
No 275
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.83 E-value=0.084 Score=55.85 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=28.2
Q ss_pred cceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 470 nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
|.=+.|-+|++.+|+|++|+|||||++-|++.
T Consensus 219 D~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 250 (588)
T 3mfy_A 219 DTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKW 250 (588)
T ss_dssp HHHSCEETTCEEEECSCCSHHHHHHHHHHHHH
T ss_pred hccCCcccCCeEEeecCCCCCHHHHHHHHHhc
Confidence 34467999999999999999999999988774
No 276
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=90.69 E-value=0.12 Score=54.96 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=27.8
Q ss_pred ceEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 471 isltI~~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
.=+.+-+|++.+|+|++|+|||+|+.-|++.
T Consensus 225 ~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~ 255 (600)
T 3vr4_A 225 TFFPVTKGGAAAVPGPFGAGKTVVQHQIAKW 255 (600)
T ss_dssp HHSCCBTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccCCccCCCEEeeecCCCccHHHHHHHHHhc
Confidence 4467999999999999999999999988875
No 277
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.58 E-value=0.12 Score=52.80 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=23.4
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 475 IEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
+++-+-+-+.||.|||||+|++.+++-.
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 4555569999999999999999998743
No 278
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.53 E-value=0.073 Score=55.36 Aligned_cols=34 Identities=15% Similarity=0.058 Sum_probs=30.0
Q ss_pred ceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (510)
Q Consensus 471 isltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p 504 (510)
.=++|-+|++++|+|.+|.|||||++-|++-...
T Consensus 145 ~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~ 178 (469)
T 2c61_A 145 GTNTLVRGQKLPIFSASGLPHNEIALQIARQASV 178 (469)
T ss_dssp TTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred eeeccccCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3478899999999999999999999999987653
No 279
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.49 E-value=0.13 Score=54.39 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
+...+.|.||+|+||||+++.+++-.
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998754
No 280
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Probab=90.47 E-value=0.12 Score=54.36 Aligned_cols=21 Identities=38% Similarity=0.700 Sum_probs=19.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHH
Q 010471 476 EANEVVAIVGLSGSGKSTFVN 496 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~k 496 (510)
+.|+++.+.|+||+|||||..
T Consensus 211 ~~g~~~~ffGlSGtGKTTLs~ 231 (524)
T 1ii2_A 211 KQGDVTVFFGLSGTGKTTLSA 231 (524)
T ss_dssp TTCCEEEEECCTTSSHHHHHC
T ss_pred CCCCEEEEEccCCcchhhhhh
Confidence 578999999999999999875
No 281
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=90.42 E-value=0.14 Score=53.89 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=24.3
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 475 IEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
+++..-+-|.||+|+|||++++.+++..
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 5667789999999999999999997654
No 282
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=90.40 E-value=0.11 Score=51.44 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=26.3
Q ss_pred ccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 469 ~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
+.+...+..|.-+-|.||+|+||||+++.+++..
T Consensus 37 ~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 37 NRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3333344456789999999999999999998754
No 283
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=89.97 E-value=0.11 Score=53.73 Aligned_cols=26 Identities=38% Similarity=0.553 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
+..+++++|++|+||||++--|+..+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999997777444
No 284
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Probab=89.94 E-value=0.14 Score=53.91 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=18.2
Q ss_pred eCC-CEEEEEcCCCCcHHHHHH
Q 010471 476 EAN-EVVAIVGLSGSGKSTFVN 496 (510)
Q Consensus 476 ~~G-e~vAIVG~SGSGKSTL~k 496 (510)
+.| +++.+.|.||+|||||..
T Consensus 232 ~~g~~~~~ffGlSGtGKTTLs~ 253 (532)
T 1ytm_A 232 LEGKNTAIFFGLSGTGKTTLST 253 (532)
T ss_dssp TTSCSEEEEECCTTSSHHHHHC
T ss_pred CCCCeEEEEEecCCCCHHHHhh
Confidence 356 799999999999999884
No 285
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=89.92 E-value=0.15 Score=53.42 Aligned_cols=33 Identities=15% Similarity=0.293 Sum_probs=28.7
Q ss_pred ceEEeeCCCEEEEEcCCCCcHHHH-HHHHhcccC
Q 010471 471 VCLTIEANEVVAIVGLSGSGKSTF-VNLLLRLYE 503 (510)
Q Consensus 471 isltI~~Ge~vAIVG~SGSGKSTL-~kLL~g~y~ 503 (510)
.=+.|-+||+.+|+|++|+||||| +..|.+--+
T Consensus 168 ~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~ 201 (515)
T 2r9v_A 168 SMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKG 201 (515)
T ss_dssp HHSCEETTCBEEEEEETTSSHHHHHHHHHHTTTT
T ss_pred cccccccCCEEEEEcCCCCCccHHHHHHHHHhhc
Confidence 447899999999999999999999 788888654
No 286
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=89.82 E-value=0.17 Score=52.58 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=24.7
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
..++.-+-+.||+|+||||+++.+++...
T Consensus 60 ~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 60 KMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp CCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 34667899999999999999999987653
No 287
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=89.74 E-value=0.16 Score=50.08 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcc
Q 010471 479 EVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
..+.|.|+.|+|||||++-++.-
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 59999999999999999877653
No 288
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.71 E-value=0.16 Score=52.75 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=24.6
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
-+++-+-+-+.||.|||||+|++.+++-
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 4667778999999999999999999874
No 289
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.69 E-value=0.17 Score=52.46 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=26.3
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 499 (510)
Q Consensus 467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~ 499 (510)
-|+.+.-=+++|+.+.|.|++|+||||++.-++
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia 218 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQA 218 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHH
Confidence 355554358999999999999999999985544
No 290
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=89.59 E-value=0.16 Score=52.80 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcc
Q 010471 479 EVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
-+|+|||+-.+|||||++.|+|.
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhhh
Confidence 46999999999999999999975
No 291
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=89.39 E-value=0.18 Score=54.61 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
+.=+++|||++|+|||||++-|++-
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSC
T ss_pred CceEEEEEECCCCCHHHHHHHHHHh
Confidence 3448999999999999999988753
No 292
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=89.29 E-value=0.22 Score=49.72 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=26.3
Q ss_pred ccccceEEeeCCC---EEEEEcCCCCcHHHHHHHHhcccC
Q 010471 467 ILNHVCLTIEANE---VVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 467 vL~nisltI~~Ge---~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
+++.+.-.+..|+ .+.|.||+|+||||+++.+++-..
T Consensus 24 ~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp HHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3333333344454 488999999999999999987553
No 293
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=89.22 E-value=0.18 Score=52.66 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=22.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
+...-+-|+||+|+||||+++.|++..
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 445567899999999999999988764
No 294
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.18 E-value=0.21 Score=51.41 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=24.0
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
-+++-+-+-+.||.|||||+|++.+++-
T Consensus 212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 212 GIKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp TCCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCCCCceECCCCchHHHHHHHHHHH
Confidence 3556677999999999999999999864
No 295
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=89.13 E-value=0.068 Score=56.17 Aligned_cols=24 Identities=42% Similarity=0.479 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 478 NEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 478 Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
|=+|+|||++|+|||||++.|.+-
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~ 266 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNE 266 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCC
Confidence 446899999999999999999875
No 296
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=89.08 E-value=0.16 Score=51.44 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=20.7
Q ss_pred CCCEEEE--EcCCCCcHHHHHHHHhcc
Q 010471 477 ANEVVAI--VGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 477 ~Ge~vAI--VG~SGSGKSTL~kLL~g~ 501 (510)
.+..+.| +|+.|+|||||++.+..-
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHH
Confidence 4557777 899999999999988754
No 297
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=89.05 E-value=0.18 Score=52.04 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=18.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHh
Q 010471 478 NEVVAIVGLSGSGKSTFVNLLL 499 (510)
Q Consensus 478 Ge~vAIVG~SGSGKSTL~kLL~ 499 (510)
..-+.|+|++||||||+++.+.
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li 74 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELA 74 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999986543
No 298
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=88.92 E-value=0.22 Score=52.50 Aligned_cols=36 Identities=22% Similarity=0.239 Sum_probs=28.9
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
+.+.+-..+..|.-+-|+||+|+|||+|++.|....
T Consensus 30 ~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 30 AIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred HHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHH
Confidence 344444555677899999999999999999998765
No 299
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=88.84 E-value=0.2 Score=52.62 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcc
Q 010471 479 EVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
=+++|||.+|+|||||++-|.+-
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~ 345 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLG 345 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Confidence 47999999999999999988763
No 300
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=88.79 E-value=0.2 Score=52.04 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
..-++++||.+|+|||||++-|.+-
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~ 218 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGE 218 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred ccceeEEecCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998854
No 301
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=88.75 E-value=0.1 Score=51.68 Aligned_cols=26 Identities=38% Similarity=0.378 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 478 NEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 478 Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
+.-+-|.||+|+||||+++.+....+
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CceEEEECCCCccHHHHHHHHHHhCc
Confidence 34599999999999999999987654
No 302
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=88.49 E-value=0.19 Score=51.00 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 010471 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
.|||||..-+|||||++.|.|--
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~ 96 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTE 96 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
No 303
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=88.45 E-value=0.19 Score=52.61 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=28.5
Q ss_pred ceEEeeCCCEEEEEcCCCCcHHHH-HHHHhcccC
Q 010471 471 VCLTIEANEVVAIVGLSGSGKSTF-VNLLLRLYE 503 (510)
Q Consensus 471 isltI~~Ge~vAIVG~SGSGKSTL-~kLL~g~y~ 503 (510)
.=+.|-+||+.+|+|++|.||||| +..|.+--+
T Consensus 155 ~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~ 188 (502)
T 2qe7_A 155 SMIPIGRGQRELIIGDRQTGKTTIAIDTIINQKG 188 (502)
T ss_dssp HSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGGS
T ss_pred cccccccCCEEEEECCCCCCchHHHHHHHHHhhc
Confidence 446889999999999999999999 778887654
No 304
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=88.43 E-value=0.11 Score=53.72 Aligned_cols=34 Identities=18% Similarity=0.102 Sum_probs=29.7
Q ss_pred ceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (510)
Q Consensus 471 isltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p 504 (510)
.=++|-+||+.+|.|.+|.|||||+.-|++--+.
T Consensus 140 ~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a 173 (464)
T 3gqb_B 140 VMNTLVRGQKLPIFSGSGLPANEIAAQIARQATV 173 (464)
T ss_dssp TTSCCBTTCBCCEEEETTSCHHHHHHHHHHHCBC
T ss_pred cccccccCCEEEEecCCCCCchHHHHHHHHHHHh
Confidence 3468899999999999999999999988887654
No 305
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=88.35 E-value=0.22 Score=48.49 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 010471 480 VVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
.+.|.||+|+||||+++.+++-
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5999999999999999998765
No 306
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=88.30 E-value=0.29 Score=52.17 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=23.9
Q ss_pred cceEEeeCCCEEEEEcCCCCcHHHHHHHH
Q 010471 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLL 498 (510)
Q Consensus 470 nisltI~~Ge~vAIVG~SGSGKSTL~kLL 498 (510)
.+.+.+.++--+.|.|.+|||||++++.|
T Consensus 206 pv~~DL~k~pHlLIaG~TGSGKS~~L~tl 234 (574)
T 2iut_A 206 PIITDLAKMPHLLVAGTTGSGKSVGVNAM 234 (574)
T ss_dssp EEEEEGGGSCCEEEECCTTSSHHHHHHHH
T ss_pred EEEEEhhhCCeeEEECCCCCCHHHHHHHH
Confidence 35566667788999999999999999864
No 307
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=88.27 E-value=0.075 Score=54.89 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 010471 480 VVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
+++|||++|+|||||++.|.+-
T Consensus 36 kI~IvG~~~vGKSTLin~L~~~ 57 (423)
T 3qq5_A 36 YIVVAGRRNVGKSSFMNALVGQ 57 (423)
T ss_dssp EEEEECSCSTTTTTTTTSSCC-
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999888764
No 308
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=88.24 E-value=0.14 Score=53.08 Aligned_cols=32 Identities=13% Similarity=0.086 Sum_probs=28.7
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC
Q 010471 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (510)
Q Consensus 473 ltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~p 504 (510)
++|-+||+++|.|.+|.|||||+.-|++--+.
T Consensus 146 ~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 146 NTLVRGQKLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp SCCBTTCBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred cccccCCEEEEeCCCCcChHHHHHHHHHHHHh
Confidence 78999999999999999999999988876543
No 309
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=88.20 E-value=0.23 Score=53.09 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=20.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLR 500 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g 500 (510)
.+..|+|+|+.|.|||||++-+..
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Confidence 456899999999999999987753
No 310
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=88.16 E-value=0.19 Score=52.02 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccc
Q 010471 479 EVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
-+|+|+|+.++|||||++.|+|+.
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll~~~ 91 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFMLRYM 91 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchhHHHHHHHHHh
Confidence 588999999999999999887653
No 311
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=88.13 E-value=0.17 Score=53.15 Aligned_cols=33 Identities=15% Similarity=0.298 Sum_probs=27.6
Q ss_pred ceEEeeCCCEEEEEcCCCCcHHHH-HHHHhcccC
Q 010471 471 VCLTIEANEVVAIVGLSGSGKSTF-VNLLLRLYE 503 (510)
Q Consensus 471 isltI~~Ge~vAIVG~SGSGKSTL-~kLL~g~y~ 503 (510)
.=+.|-+||+.+|+|++|.||||| +..|.+--.
T Consensus 155 ~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~ 188 (510)
T 2ck3_A 155 SLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKR 188 (510)
T ss_dssp HHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHH
T ss_pred cccccccCCEEEEecCCCCCchHHHHHHHHHHHh
Confidence 346888999999999999999999 677776543
No 312
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=87.98 E-value=0.19 Score=52.66 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 010471 480 VVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
++++||++|+|||||++-|++-
T Consensus 35 ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 35 SFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp EEEEESCGGGTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999888643
No 313
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=87.93 E-value=0.24 Score=48.09 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 010471 480 VVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
.+.|.||+|+||||+++.+++-
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHH
Confidence 3899999999999999988765
No 314
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.75 E-value=0.25 Score=48.01 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 010471 481 VAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 481 vAIVG~SGSGKSTL~kLL~g~ 501 (510)
+.|.||+|+||||+++.+++-
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 899999999999999988764
No 315
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=87.61 E-value=0.28 Score=54.41 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=23.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
+.+.-+.|+|++|+||||+++.+++..
T Consensus 205 ~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 205 RRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 467788999999999999999988654
No 316
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=87.44 E-value=0.22 Score=52.40 Aligned_cols=33 Identities=30% Similarity=0.286 Sum_probs=25.5
Q ss_pred cccceEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 500 (510)
Q Consensus 468 L~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g 500 (510)
|+++.--+++|+.+.|.|++|+|||||+.-++.
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 343332478999999999999999999855543
No 317
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=87.27 E-value=0.21 Score=52.29 Aligned_cols=33 Identities=15% Similarity=0.271 Sum_probs=28.9
Q ss_pred ceEEeeCCCEEEEEcCCCCcHHHH-HHHHhcccC
Q 010471 471 VCLTIEANEVVAIVGLSGSGKSTF-VNLLLRLYE 503 (510)
Q Consensus 471 isltI~~Ge~vAIVG~SGSGKSTL-~kLL~g~y~ 503 (510)
.=+.|-+||+.+|+|++|.||||| +..|.+--+
T Consensus 156 ~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~ 189 (507)
T 1fx0_A 156 AMIPVGRGQRELIIGDRQTGKTAVATDTILNQQG 189 (507)
T ss_dssp TTSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCT
T ss_pred cccccccCCEEEEecCCCCCccHHHHHHHHHhhc
Confidence 447899999999999999999999 788888654
No 318
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=87.24 E-value=0.21 Score=52.21 Aligned_cols=30 Identities=17% Similarity=0.378 Sum_probs=26.5
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHH-HHHHhcc
Q 010471 472 CLTIEANEVVAIVGLSGSGKSTF-VNLLLRL 501 (510)
Q Consensus 472 sltI~~Ge~vAIVG~SGSGKSTL-~kLL~g~ 501 (510)
=+.|-+||+.+|+|.+|+||||| +..|.+-
T Consensus 156 l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~ 186 (513)
T 3oaa_A 156 MIPIGRGQRELIIGDRQTGKTALAIDAIINQ 186 (513)
T ss_dssp HSCCBTTCBCEEEESSSSSHHHHHHHHHHTT
T ss_pred ccccccCCEEEeecCCCCCcchHHHHHHHhh
Confidence 37889999999999999999999 6788764
No 319
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=87.22 E-value=0.32 Score=46.82 Aligned_cols=28 Identities=11% Similarity=0.241 Sum_probs=23.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
++-..+.|.||.|+|||++++.|++.+.
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 3445799999999999999999998654
No 320
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=86.53 E-value=0.33 Score=51.65 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc
Q 010471 478 NEVVAIVGLSGSGKSTFVNLLLR 500 (510)
Q Consensus 478 Ge~vAIVG~SGSGKSTL~kLL~g 500 (510)
..+++|+|..|.|||||++.+..
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 47899999999999999998873
No 321
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.39 E-value=0.23 Score=60.28 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=31.1
Q ss_pred CCccccce--EEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471 465 VPILNHVC--LTIEANEVVAIVGLSGSGKSTFVNLLL 499 (510)
Q Consensus 465 ~~vL~nis--ltI~~Ge~vAIVG~SGSGKSTL~kLL~ 499 (510)
.+.|+++. .-+++|+.+.+.|++|||||||+..+.
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 45788887 579999999999999999999998765
No 322
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=86.31 E-value=0.35 Score=53.81 Aligned_cols=29 Identities=14% Similarity=0.260 Sum_probs=24.2
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
-+++-+-+-+.||+|+|||||++.+++-.
T Consensus 234 g~~~p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 234 GVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCCCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34555679999999999999999998754
No 323
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=86.12 E-value=0.34 Score=53.73 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=23.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
+.+.-+-|+||+|+||||+++.|+...
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 455678999999999999999998764
No 324
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=85.90 E-value=0.29 Score=58.65 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=25.7
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
+++|+.|.|.|++|+|||||+.-++.-..
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 89999999999999999999988765443
No 325
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=85.87 E-value=0.33 Score=48.05 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
+|..+-|.||.|+|||++++.+++-.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 56778899999999999999887654
No 326
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=85.70 E-value=0.38 Score=51.83 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 010471 480 VVAIVGLSGSGKSTFVNLLLR 500 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~g 500 (510)
.++|||+.++|||||++-|++
T Consensus 179 ~I~iiG~~d~GKSTLi~~Ll~ 199 (592)
T 3mca_A 179 HLVVTGHVDSGKSTMLGRIMF 199 (592)
T ss_dssp EEEEECCSSSTHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999988853
No 327
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=85.28 E-value=0.35 Score=60.59 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
...-|-||||+||||||+.+.|++-+
T Consensus 922 ~r~gvmlvGptgsGKTt~~~~La~al 947 (2695)
T 4akg_A 922 TQQALILVGKAGCGKTATWKTVIDAM 947 (2695)
T ss_dssp HCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hcceEEEECCCCCCHHHHHHHHHHHH
Confidence 34669999999999999999998643
No 328
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=85.27 E-value=0.35 Score=52.12 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccC
Q 010471 480 VVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
-+-|+||+|+|||+|++.+++..+
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~ 352 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAP 352 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCS
T ss_pred ceEEECCCchHHHHHHHHHHHhCC
Confidence 799999999999999999998764
No 329
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=85.01 E-value=0.56 Score=51.89 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 010471 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
.|++||..++|||||++.|.|.-
T Consensus 53 ~I~vvG~~saGKSSllnaL~g~~ 75 (772)
T 3zvr_A 53 QIAVVGGQSAGKSSVLENFVGRD 75 (772)
T ss_dssp EEEEEECTTTCHHHHHHHHHSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999954
No 330
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=84.88 E-value=0.33 Score=54.64 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
...-+.|+||+|+||||+++.+++..
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 34458999999999999999998765
No 331
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=84.63 E-value=0.35 Score=48.92 Aligned_cols=28 Identities=36% Similarity=0.306 Sum_probs=22.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
.+|..|.|=|.=||||||++++|...+.
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3677899999999999999999997653
No 332
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=84.17 E-value=0.6 Score=56.83 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=23.3
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471 475 IEANEVVAIVGLSGSGKSTFVNLLL 499 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL~kLL~ 499 (510)
+++|+.|-|.||+|+|||||+.-++
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala 1448 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVI 1448 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999999997763
No 333
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=83.94 E-value=0.35 Score=54.53 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 479 EVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
..+.|+||+|+|||++++.|.....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4789999999999999999988763
No 334
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=83.94 E-value=0.58 Score=45.55 Aligned_cols=28 Identities=36% Similarity=0.445 Sum_probs=22.3
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 475 IEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
-+++++++++|+.|+||||++--|+..+
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~L 65 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAF 65 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHH
Confidence 4478899999999999999997766543
No 335
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=83.76 E-value=0.56 Score=45.92 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 010471 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
.+-+-||+|+||||+++.+++-.
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHT
T ss_pred EEEeeCcCCCCHHHHHHHHHHHh
Confidence 56677889999999999998654
No 336
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=83.63 E-value=0.41 Score=51.35 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
.++.+.|.|+.|+||||+++-+...+.
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~ 229 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAE 229 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999988887654
No 337
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=83.36 E-value=0.47 Score=51.89 Aligned_cols=28 Identities=29% Similarity=0.502 Sum_probs=25.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
...|.|-|-|+||||||.-.|.++++..
T Consensus 92 ~~nQsIiisGESGAGKTe~tK~i~~yla 119 (697)
T 1lkx_A 92 QENQCVIISGESGAGKTEASKKIMQFLT 119 (697)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEecCCCCCCchhhHHHHHHHHH
Confidence 4679999999999999999999998764
No 338
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=83.24 E-value=0.48 Score=60.05 Aligned_cols=25 Identities=40% Similarity=0.486 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 479 EVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
.-+-||||+||||||+.+.|++-+.
T Consensus 907 hGvmlVGp~gsGKTt~~~~L~~al~ 931 (3245)
T 3vkg_A 907 HGVMMVGPSGGGKTTSWEVYLEAIE 931 (3245)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred eeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3478999999999999999886543
No 339
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=82.77 E-value=0.73 Score=55.28 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=28.2
Q ss_pred CCccccc-e-EEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471 465 VPILNHV-C-LTIEANEVVAIVGLSGSGKSTFVNLLL 499 (510)
Q Consensus 465 ~~vL~ni-s-ltI~~Ge~vAIVG~SGSGKSTL~kLL~ 499 (510)
.+.|+++ + --||+|+.+.|.|++|||||+|+.-++
T Consensus 19 i~~LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlqla 55 (1706)
T 3cmw_A 19 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 55 (1706)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHH
T ss_pred cHHHHHHhhcCCcCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3456665 3 469999999999999999999986654
No 340
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=82.30 E-value=0.49 Score=49.36 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=18.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHh
Q 010471 479 EVVAIVGLSGSGKSTFVNLLL 499 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~ 499 (510)
-+++++|+.++|||||++-|+
T Consensus 44 ~~i~iiG~vd~GKSTLi~~Ll 64 (467)
T 1r5b_A 44 VNIVFIGHVDAGKSTLGGNIL 64 (467)
T ss_dssp EEEEEEECGGGTHHHHHHHHH
T ss_pred eEEEEEECCCCCHHHHHHHHH
Confidence 379999999999999998775
No 341
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=81.64 E-value=0.6 Score=51.57 Aligned_cols=28 Identities=25% Similarity=0.429 Sum_probs=24.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
...|.|-|-|+||||||.-.|.++++..
T Consensus 170 ~~nQsIiisGESGAGKTe~tK~i~~yla 197 (770)
T 1w9i_A 170 RQNQSLLITGESGAGKTENTKKVIQYLA 197 (770)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCcchHHHHHHHHHHH
Confidence 4678999999999999999999998753
No 342
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=81.64 E-value=0.68 Score=51.31 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 010471 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
.+-|+||+|+|||++++.|....
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 343
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=81.58 E-value=0.57 Score=51.87 Aligned_cols=28 Identities=25% Similarity=0.507 Sum_probs=25.0
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
+..|.|-|-|+||||||.-.|.+++++.
T Consensus 169 ~~nQsIiiSGESGAGKTe~tK~im~yla 196 (783)
T 4db1_A 169 RENQSILITGESGAGKTVNTKRVIQYFA 196 (783)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEeCCCCCCCchHHHHHHHhhh
Confidence 4678999999999999999999998773
No 344
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=81.32 E-value=0.59 Score=51.86 Aligned_cols=28 Identities=25% Similarity=0.489 Sum_probs=25.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
...|.|-|-|+||||||.-.|+++++..
T Consensus 138 ~~nQsIiiSGESGAGKTe~tK~i~~yla 165 (784)
T 2v26_A 138 KLSQSIIVSGESGAGKTENTKFVLRYLT 165 (784)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEcCCCCCCceehHHHHHHHHH
Confidence 4679999999999999999999998764
No 345
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=81.10 E-value=0.61 Score=51.82 Aligned_cols=28 Identities=29% Similarity=0.553 Sum_probs=25.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
...|.+-|-|+||||||.-.|++++++.
T Consensus 154 ~~nQsIiisGESGAGKTe~tK~i~~yla 181 (795)
T 1w7j_A 154 ERNQSIIVSGESGAGKTVSAKYAMRYFA 181 (795)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCcchHHHHHHHHHH
Confidence 3678999999999999999999998764
No 346
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=80.99 E-value=0.73 Score=51.02 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 010471 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
.+-|+||+|+|||++++.+....
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 68899999999999999998765
No 347
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=80.92 E-value=0.77 Score=42.65 Aligned_cols=26 Identities=31% Similarity=0.266 Sum_probs=21.7
Q ss_pred eCCCEEEEEcCCCCcHHH-HHHHHhcc
Q 010471 476 EANEVVAIVGLSGSGKST-FVNLLLRL 501 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKST-L~kLL~g~ 501 (510)
..|...-|.|+=|||||| |++.+-++
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~ 52 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRG 52 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999 77877554
No 348
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=80.48 E-value=0.82 Score=52.29 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=20.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHh
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLL 499 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~ 499 (510)
+..+++|+|+.|.|||||++.+.
T Consensus 149 ~~RVV~IvGmGGIGKTTLAk~Vy 171 (1221)
T 1vt4_I 149 PAKNVLIDGVLGSGKTWVALDVC 171 (1221)
T ss_dssp SSCEEEECCSTTSSHHHHHHHHH
T ss_pred CCeEEEEEcCCCccHHHHHHHHH
Confidence 35799999999999999999776
No 349
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=78.88 E-value=0.69 Score=51.70 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=24.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
...|.|-|-|+||||||.-.|.+++++.
T Consensus 167 ~~nQsIiiSGESGAGKTe~tK~i~~yla 194 (837)
T 1kk8_A 167 RENQSCLITGESGAGKTENTKKVIMYLA 194 (837)
T ss_dssp TSEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCchhhHHHHHHHHH
Confidence 4678999999999999999999998864
No 350
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=78.41 E-value=0.77 Score=52.45 Aligned_cols=28 Identities=25% Similarity=0.429 Sum_probs=25.0
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
...|.|-|-|+||||||.-.|.+++++.
T Consensus 170 ~~~QsIiisGESGAGKTe~~K~i~~yla 197 (1010)
T 1g8x_A 170 RQNQSLLITGESGAGKTENTKKVIQYLA 197 (1010)
T ss_dssp TCCEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCcchHHHHHHHHHH
Confidence 4678999999999999999999998763
No 351
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=78.37 E-value=0.82 Score=52.21 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=25.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
...|.|-|-|+||||||.-.|.+++++.
T Consensus 144 ~~~QsIiisGESGAGKTe~~K~i~~yla 171 (995)
T 2ycu_A 144 REDQSILCTGESGAGKTENTKKVIQYLA 171 (995)
T ss_dssp CCCEEEEEECBTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEecCCCCCCchhhHHHHHHHHH
Confidence 4689999999999999999999998864
No 352
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=78.16 E-value=0.85 Score=52.17 Aligned_cols=28 Identities=25% Similarity=0.489 Sum_probs=24.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
...|.|-|-|+||||||.-.|.++++..
T Consensus 142 ~~nQsIiiSGESGAGKTestK~im~yLa 169 (1052)
T 4anj_A 142 KLSQSIIVSGESGAGKTENTKFVLRYLT 169 (1052)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999998753
No 353
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=77.30 E-value=1.1 Score=44.77 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 479 EVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
-++-|.|..+|||||++|-+--+|.
T Consensus 33 ~klLlLG~geSGKST~~KQmkii~~ 57 (353)
T 1cip_A 33 VKLLLLGAGESGKSTIVKQMKIIHE 57 (353)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHS
T ss_pred ceEEEEcCCCCCchhHHHHHHHhhC
Confidence 4788999999999999987765554
No 354
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=77.01 E-value=1.2 Score=46.12 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=26.9
Q ss_pred CCccccceEEeeCCC-EEEEEcCCCCcHHHHHHHHhccc
Q 010471 465 VPILNHVCLTIEANE-VVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 465 ~~vL~nisltI~~Ge-~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
+.+++.+--.+..++ .+.|.|+-|+||||++..+...+
T Consensus 31 ~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 31 KNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 346654432344444 99999999999999998776544
No 355
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=76.16 E-value=0.88 Score=52.42 Aligned_cols=28 Identities=29% Similarity=0.553 Sum_probs=25.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
...|.|-|-|+||||||.-.|++++++.
T Consensus 154 ~~~QsIiisGESGAGKTe~~K~i~~yla 181 (1080)
T 2dfs_A 154 ERNQSIIVSGESGAGKTVSAKYAMRYFA 181 (1080)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEcCCCCCCccchHHHHHHHHH
Confidence 3578999999999999999999999875
No 356
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=75.91 E-value=1.2 Score=48.01 Aligned_cols=25 Identities=36% Similarity=0.481 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
.++.+.|.|+.|+||||+++-+...
T Consensus 163 ~~~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 163 TRRISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHH
Confidence 5789999999999999987655443
No 357
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=75.37 E-value=1.7 Score=39.69 Aligned_cols=28 Identities=25% Similarity=0.251 Sum_probs=20.6
Q ss_pred eCCCEEEEEcCCCCcHHHH--HHHHhcccC
Q 010471 476 EANEVVAIVGLSGSGKSTF--VNLLLRLYE 503 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL--~kLL~g~y~ 503 (510)
..|+-+.+++|+|||||.. +-++..+..
T Consensus 49 ~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~ 78 (224)
T 1qde_A 49 IEGHDVLAQAQSGTGKTGTFSIAALQRIDT 78 (224)
T ss_dssp HTTCCEEEECCTTSSHHHHHHHHHHHHCCT
T ss_pred hcCCCEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 4677899999999999976 344555443
No 358
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=75.20 E-value=1.4 Score=46.78 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=20.4
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHh
Q 010471 475 IEANEVVAIVGLSGSGKSTFVNLLL 499 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL~kLL~ 499 (510)
+.+=.-+||||+.++|||||..-|+
T Consensus 28 ~~r~RNiaIiaHvdaGKTTLtE~lL 52 (548)
T 3vqt_A 28 AARRRTFAIISHPDAGKTTLTEKLL 52 (548)
T ss_dssp HHTEEEEEEECCTTSSHHHHHHHHH
T ss_pred ccccceEEEEeCCCCCHHHHHHHHH
Confidence 3344679999999999999997664
No 359
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=75.16 E-value=1.3 Score=51.08 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 010471 479 EVVAIVGLSGSGKSTFVNLLLR 500 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~g 500 (510)
-+++++|+.|+|||||++-|.+
T Consensus 297 lnIvIIGhvDvGKSTLInrLt~ 318 (1289)
T 3avx_A 297 VNVGTIGHVDHGKTTLTAAITT 318 (1289)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHh
Confidence 3699999999999999998876
No 360
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=75.13 E-value=1.5 Score=40.63 Aligned_cols=25 Identities=28% Similarity=0.203 Sum_probs=20.4
Q ss_pred eCCCEEEEEcCCCCcHHHHH-HHHhc
Q 010471 476 EANEVVAIVGLSGSGKSTFV-NLLLR 500 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~-kLL~g 500 (510)
.+|+...+.|+-||||||.+ +++.|
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r 51 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRR 51 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 47999999999999999876 44443
No 361
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=73.72 E-value=1.3 Score=55.62 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=23.9
Q ss_pred EeeCCCEEEEEcCCCCcHHHHH-HHHhcc
Q 010471 474 TIEANEVVAIVGLSGSGKSTFV-NLLLRL 501 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~-kLL~g~ 501 (510)
-+..|+-+-++||+|+|||+++ +++.+.
T Consensus 1263 ~l~~~~~vLL~GPpGtGKT~la~~~l~~~ 1291 (2695)
T 4akg_A 1263 LLNSKRGIILCGPPGSGKTMIMNNALRNS 1291 (2695)
T ss_dssp HHHHTCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred HHHCCCeEEEECCCCCCHHHHHHHHHhcC
Confidence 3568999999999999999999 666654
No 362
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=73.12 E-value=1.7 Score=39.07 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=19.1
Q ss_pred CCCEEEEEcCCCCcHHHHH--HHHhccc
Q 010471 477 ANEVVAIVGLSGSGKSTFV--NLLLRLY 502 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~--kLL~g~y 502 (510)
.|+-+.+++|+|||||... -++..++
T Consensus 37 ~~~~~li~~~TGsGKT~~~~~~~~~~l~ 64 (207)
T 2gxq_A 37 EGKDLIGQARTGTGKTLAFALPIAERLA 64 (207)
T ss_dssp TTCCEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CCCCEEEECCCCChHHHHHHHHHHHHHh
Confidence 4677899999999999853 3444444
No 363
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=72.75 E-value=1.2 Score=40.08 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=19.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHh
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLL 499 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~ 499 (510)
.|+.+.+++|+|+|||.++-+.+
T Consensus 47 ~~~~~li~~~tGsGKT~~~~~~~ 69 (216)
T 3b6e_A 47 EGKNIIICLPTGSGKTRVAVYIA 69 (216)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHH
T ss_pred cCCCEEEEcCCCCCHHHHHHHHH
Confidence 46788999999999999876554
No 364
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=71.90 E-value=1.7 Score=47.61 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.0
Q ss_pred eCCCEEEEEcCCCCcHHHHHHH
Q 010471 476 EANEVVAIVGLSGSGKSTFVNL 497 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kL 497 (510)
..|+.+-++||+||||||.+-+
T Consensus 44 ~~~~~~lv~apTGsGKT~~~~l 65 (715)
T 2va8_A 44 LEGNRLLLTSPTGSGKTLIAEM 65 (715)
T ss_dssp TTTCCEEEECCTTSCHHHHHHH
T ss_pred cCCCcEEEEcCCCCcHHHHHHH
Confidence 3589999999999999999743
No 365
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=71.34 E-value=1.7 Score=48.45 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=26.3
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 467 vL~nisltI~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
.+++... ++..-+-+.||.|||||.+++.+++-..
T Consensus 502 ~f~~~g~--~~~~gvLl~GPPGtGKT~lAkaiA~e~~ 536 (806)
T 3cf2_A 502 KFLKFGM--TPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp GGSSSCC--CCCSCCEEESSTTSSHHHHHHHHHHTTT
T ss_pred HHHhcCC--CCCceEEEecCCCCCchHHHHHHHHHhC
Confidence 4444444 4445588999999999999999987653
No 366
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=69.95 E-value=2.1 Score=49.49 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=20.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLR 500 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g 500 (510)
.-..++|+|+.|.|||||++-+..
T Consensus 146 ~~~~v~i~G~gG~GKTtLa~~~~~ 169 (1249)
T 3sfz_A 146 EPGWVTIYGMAGCGKSVLAAEAVR 169 (1249)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHTC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhc
Confidence 345899999999999999987654
No 367
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=69.43 E-value=2.8 Score=38.66 Aligned_cols=20 Identities=25% Similarity=0.169 Sum_probs=17.1
Q ss_pred eCCCEEEEEcCCCCcHHHHH
Q 010471 476 EANEVVAIVGLSGSGKSTFV 495 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~ 495 (510)
..|+-+.+++|+|||||+..
T Consensus 60 ~~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 60 LQGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp HTTCCEEEECCTTSCHHHHH
T ss_pred hCCCCEEEEeCCCCcHHHHH
Confidence 36788999999999999853
No 368
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=69.10 E-value=1.1 Score=52.19 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=24.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
...|.|-|-|+||||||.-.|.+++++.
T Consensus 167 ~~~Q~i~isGeSGaGKTe~~k~~~~yla 194 (1184)
T 1i84_S 167 REDQSILCTGESGAGKTENTKKVIQYLA 194 (1184)
T ss_dssp TCCEEEECCCSTTSSTTHHHHHHHHHHH
T ss_pred CCCcEEEEecCCCCCccHHHHHHHHHHH
Confidence 3578999999999999999999998864
No 369
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=69.10 E-value=2.2 Score=44.00 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=21.9
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLR 500 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g 500 (510)
..+.-+.+.|.|+-||||||+++-++.
T Consensus 157 ~~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 157 HVSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccccEEEEEcCCCCCHHHHHHHHhc
Confidence 345666889999999999999976654
No 370
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=69.04 E-value=2.1 Score=39.20 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=16.9
Q ss_pred eCCCEEEEEcCCCCcHHHHH
Q 010471 476 EANEVVAIVGLSGSGKSTFV 495 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~ 495 (510)
..|+-+.+++|+|||||...
T Consensus 55 ~~~~~~l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 55 LQGIDLIVVAQTGTGKTLSY 74 (228)
T ss_dssp HTTCCEEEECCTTSCHHHHH
T ss_pred hCCCCEEEECCCCChHHHHH
Confidence 36788899999999999854
No 371
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=68.97 E-value=1.8 Score=47.25 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=16.3
Q ss_pred CCCEEEEEcCCCCcHHHH
Q 010471 477 ANEVVAIVGLSGSGKSTF 494 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL 494 (510)
.|+.+.++||+|||||+.
T Consensus 154 ~rk~vlv~apTGSGKT~~ 171 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYH 171 (677)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 578999999999999993
No 372
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=68.54 E-value=3 Score=38.85 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=19.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhc
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLR 500 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g 500 (510)
.++.+.++|++|+|||.++-.++.
T Consensus 107 ~~~~~ll~~~tG~GKT~~a~~~~~ 130 (237)
T 2fz4_A 107 VDKRGCIVLPTGSGKTHVAMAAIN 130 (237)
T ss_dssp TTSEEEEEESSSTTHHHHHHHHHH
T ss_pred hCCCEEEEeCCCCCHHHHHHHHHH
Confidence 456689999999999999866553
No 373
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=68.23 E-value=3 Score=38.35 Aligned_cols=29 Identities=21% Similarity=0.108 Sum_probs=21.4
Q ss_pred eeCCCEEEEEcCCCCcHHHH--HHHHhcccC
Q 010471 475 IEANEVVAIVGLSGSGKSTF--VNLLLRLYE 503 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL--~kLL~g~y~ 503 (510)
+..|+-+.+++++|||||.. +-++.+++.
T Consensus 58 ~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~ 88 (230)
T 2oxc_A 58 GRCGLDLIVQAKSGTGKTCVFSTIALDSLVL 88 (230)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHHHCCT
T ss_pred HhCCCCEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 34678899999999999986 344555543
No 374
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=67.95 E-value=2.8 Score=38.92 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=20.7
Q ss_pred eCCCEEEEEcCCCCcHHHH--HHHHhcccC
Q 010471 476 EANEVVAIVGLSGSGKSTF--VNLLLRLYE 503 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL--~kLL~g~y~ 503 (510)
..|+-+.+++|+|||||.. +-++..+.+
T Consensus 64 ~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~ 93 (245)
T 3dkp_A 64 LHGRELLASAPTGSGKTLAFSIPILMQLKQ 93 (245)
T ss_dssp HTTCCEEEECCTTSCHHHHHHHHHHHHHCS
T ss_pred hCCCCEEEECCCCCcHHHHHHHHHHHHHhh
Confidence 3577899999999999985 444555544
No 375
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=67.52 E-value=2.8 Score=38.15 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=18.7
Q ss_pred CCCEEEEEcCCCCcHHHH--HHHHhccc
Q 010471 477 ANEVVAIVGLSGSGKSTF--VNLLLRLY 502 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL--~kLL~g~y 502 (510)
.|+-+.+++++|||||.. +-++..+.
T Consensus 40 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~ 67 (219)
T 1q0u_A 40 RGESMVGQSQTGTGKTHAYLLPIMEKIK 67 (219)
T ss_dssp HTCCEEEECCSSHHHHHHHHHHHHHHCC
T ss_pred CCCCEEEECCCCChHHHHHHHHHHHHHH
Confidence 467788999999999985 33444443
No 376
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=67.01 E-value=2.9 Score=42.62 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccc
Q 010471 479 EVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
-++-|.|.-+|||||++|-+==+|
T Consensus 41 ~klLLLG~geSGKSTi~KQmkiih 64 (402)
T 1azs_C 41 HRLLLLGAGESGKSTIVKQMRILH 64 (402)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ceEEEecCCCCchhhHHHHHHHHh
Confidence 478999999999999998764333
No 377
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=66.79 E-value=2.9 Score=40.19 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=21.3
Q ss_pred CCCEEEEEc---CCCCcHHHHHHHHhccc
Q 010471 477 ANEVVAIVG---LSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 477 ~Ge~vAIVG---~SGSGKSTL~kLL~g~y 502 (510)
.+++++|++ +.|+||||++--|+..+
T Consensus 33 ~~~~i~v~~~s~KGGvGKTT~a~nLA~~l 61 (298)
T 2oze_A 33 KNEAIVILNNYFKGGVGKSKLSTMFAYLT 61 (298)
T ss_dssp HCSCEEEEECCSSSSSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeccCCCCchHHHHHHHHHHHH
Confidence 578899997 89999999987776543
No 378
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=66.45 E-value=3.1 Score=37.23 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=15.9
Q ss_pred CCCEEEEEcCCCCcHHHHH
Q 010471 477 ANEVVAIVGLSGSGKSTFV 495 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~ 495 (510)
.|+-+.+++|+|||||...
T Consensus 39 ~~~~~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 39 SGRDILARAKNGTGKSGAY 57 (206)
T ss_dssp TTCCEEEECCSSSTTHHHH
T ss_pred cCCCEEEECCCCCchHHHH
Confidence 5677899999999999643
No 379
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=66.39 E-value=2.7 Score=40.58 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=17.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHH
Q 010471 477 ANEVVAIVGLSGSGKSTFVNL 497 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kL 497 (510)
.|+.+.+++|+|||||...-+
T Consensus 30 ~~~~~lv~~~TGsGKT~~~~~ 50 (337)
T 2z0m_A 30 QGKNVVVRAKTGSGKTAAYAI 50 (337)
T ss_dssp TTCCEEEECCTTSSHHHHHHH
T ss_pred cCCCEEEEcCCCCcHHHHHHH
Confidence 567899999999999986543
No 380
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=64.98 E-value=3.4 Score=41.36 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=21.9
Q ss_pred eeCCCEEEEEc-CCCCcHHHHHHHHhcc
Q 010471 475 IEANEVVAIVG-LSGSGKSTFVNLLLRL 501 (510)
Q Consensus 475 I~~Ge~vAIVG-~SGSGKSTL~kLL~g~ 501 (510)
=+++++++++| +-|+||||++--|+..
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~ 167 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIA 167 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHH
Confidence 35678999996 8999999998777643
No 381
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=64.97 E-value=2.6 Score=46.27 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=17.5
Q ss_pred CCCEEEEEcCCCCcHHHHH
Q 010471 477 ANEVVAIVGLSGSGKSTFV 495 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~ 495 (510)
.|+.+-++||+|||||+.+
T Consensus 38 ~~~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 38 EGKNALISIPTASGKTLIA 56 (720)
T ss_dssp GTCEEEEECCGGGCHHHHH
T ss_pred CCCcEEEEcCCccHHHHHH
Confidence 4899999999999999987
No 382
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=64.91 E-value=3.1 Score=39.00 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=17.7
Q ss_pred eeCCCEEEEEcCCCCcHHHHH
Q 010471 475 IEANEVVAIVGLSGSGKSTFV 495 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL~ 495 (510)
+..|+-+.+++++|||||...
T Consensus 77 i~~~~~~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 77 ALQGRDIIGLAETGSGKTGAF 97 (249)
T ss_dssp HHTTCCEEEECCTTSCHHHHH
T ss_pred HhCCCCEEEEcCCCCCchhHh
Confidence 346788999999999999864
No 383
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=62.95 E-value=4.5 Score=38.03 Aligned_cols=17 Identities=41% Similarity=0.624 Sum_probs=15.5
Q ss_pred EcCCCCcHHHHHHHHhc
Q 010471 484 VGLSGSGKSTFVNLLLR 500 (510)
Q Consensus 484 VG~SGSGKSTL~kLL~g 500 (510)
=|..|+|||||++-+.+
T Consensus 34 ~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 34 KGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp TTTCCCSHHHHHHHHHC
T ss_pred cCCCCcCHHHHHHHHHh
Confidence 58889999999999987
No 384
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=61.95 E-value=3.8 Score=37.14 Aligned_cols=19 Identities=26% Similarity=0.209 Sum_probs=16.0
Q ss_pred CCCEEEEEcCCCCcHHHHH
Q 010471 477 ANEVVAIVGLSGSGKSTFV 495 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~ 495 (510)
.|+-+.+++|+|||||...
T Consensus 50 ~~~~~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 50 LGMDVLCQAKSGMGKTAVF 68 (220)
T ss_dssp TTCCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCchhhhh
Confidence 4667899999999999854
No 385
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=61.83 E-value=2.2 Score=46.64 Aligned_cols=21 Identities=10% Similarity=0.167 Sum_probs=18.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHH
Q 010471 476 EANEVVAIVGLSGSGKSTFVN 496 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~k 496 (510)
..|+.+-++||+|||||+.+-
T Consensus 38 ~~~~~~lv~apTGsGKT~~~~ 58 (702)
T 2p6r_A 38 FSGKNLLLAMPTAAGKTLLAE 58 (702)
T ss_dssp TTCSCEEEECSSHHHHHHHHH
T ss_pred hCCCcEEEEcCCccHHHHHHH
Confidence 358899999999999999873
No 386
>2zci_A Phosphoenolpyruvate carboxykinase [GTP], phosphoenolpyruvate; GTP-dependent, signaling protein, lyase; 2.30A {Corynebacterium glutamicum}
Probab=61.79 E-value=3.1 Score=43.84 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=20.3
Q ss_pred EEeeCCCEEEEE--cCCCCcHHHHHHHH
Q 010471 473 LTIEANEVVAIV--GLSGSGKSTFVNLL 498 (510)
Q Consensus 473 ltI~~Ge~vAIV--G~SGSGKSTL~kLL 498 (510)
++=|.|++.=|. +|||||||||+.+.
T Consensus 256 vt~P~g~~~yvaaAfPSacGKTnlAMl~ 283 (610)
T 2zci_A 256 LINPEGKAYHIAAAFPSACGKTNLAMIT 283 (610)
T ss_dssp EECSSSCEEEEEEECSSSHHHHHHHTCC
T ss_pred ecCCCCcEEEEEEecccccchhhHhhcC
Confidence 455788876554 99999999999763
No 387
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=61.47 E-value=4.9 Score=38.95 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=21.6
Q ss_pred eCCCEEEEEcC-CCCcHHHHHHHHhccc
Q 010471 476 EANEVVAIVGL-SGSGKSTFVNLLLRLY 502 (510)
Q Consensus 476 ~~Ge~vAIVG~-SGSGKSTL~kLL~g~y 502 (510)
+++++++|.|. .|+||||++--|+..+
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~l 129 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVI 129 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHH
Confidence 35689999997 6899999987776544
No 388
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=60.97 E-value=3.2 Score=38.42 Aligned_cols=20 Identities=25% Similarity=0.185 Sum_probs=16.8
Q ss_pred eCCCEEEEEcCCCCcHHHHH
Q 010471 476 EANEVVAIVGLSGSGKSTFV 495 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~ 495 (510)
..|+-+.+++|+|||||...
T Consensus 65 ~~~~~~li~apTGsGKT~~~ 84 (237)
T 3bor_A 65 IKGYDVIAQAQSGTGKTATF 84 (237)
T ss_dssp HTTCCEEECCCSSHHHHHHH
T ss_pred hCCCCEEEECCCCCcHHHHH
Confidence 36778999999999999763
No 389
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=60.60 E-value=3.5 Score=38.93 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=16.8
Q ss_pred eCCCEEEEEcCCCCcHHHHH
Q 010471 476 EANEVVAIVGLSGSGKSTFV 495 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~ 495 (510)
..|+-+.+++++|||||...
T Consensus 89 ~~~~~~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 89 LEGRDLLAAAKTGSGKTLAF 108 (262)
T ss_dssp HHTCCCEECCCTTSCHHHHH
T ss_pred hCCCcEEEEccCCCCchHHH
Confidence 35777899999999999864
No 390
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=60.59 E-value=4.6 Score=37.41 Aligned_cols=20 Identities=25% Similarity=0.150 Sum_probs=17.3
Q ss_pred eCCCEEEEEcCCCCcHHHHH
Q 010471 476 EANEVVAIVGLSGSGKSTFV 495 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~ 495 (510)
..|+-+.+++|+|||||...
T Consensus 64 ~~g~~~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 64 LSGLDMVGVAQTGSGKTLSY 83 (242)
T ss_dssp HHTCCEEEEECTTSCHHHHH
T ss_pred hCCCCEEEECCCcCHHHHHH
Confidence 36888999999999999864
No 391
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=59.14 E-value=4.5 Score=37.66 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=17.3
Q ss_pred eeCCCEEEEEcCCCCcHHHHH
Q 010471 475 IEANEVVAIVGLSGSGKSTFV 495 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL~ 495 (510)
+..|+-+.+++++|||||...
T Consensus 57 i~~~~~~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 57 ILEHRDIMACAQTGSGKTAAF 77 (253)
T ss_dssp HHTTCCEEEECCTTSSHHHHH
T ss_pred HhCCCCEEEECCCCChHHHHH
Confidence 345788999999999999843
No 392
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=58.89 E-value=6.4 Score=37.52 Aligned_cols=27 Identities=33% Similarity=0.417 Sum_probs=21.2
Q ss_pred eCCCEEEEEcC-CCCcHHHHHHHHhccc
Q 010471 476 EANEVVAIVGL-SGSGKSTFVNLLLRLY 502 (510)
Q Consensus 476 ~~Ge~vAIVG~-SGSGKSTL~kLL~g~y 502 (510)
++++++++.|. .|.||||++--|+..+
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~l 107 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAY 107 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHH
Confidence 35689999986 6899999987776544
No 393
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=58.77 E-value=6 Score=38.50 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=16.1
Q ss_pred CCEEEEEcCCCCcHHHHHH
Q 010471 478 NEVVAIVGLSGSGKSTFVN 496 (510)
Q Consensus 478 Ge~vAIVG~SGSGKSTL~k 496 (510)
++.+.+.+|+|||||+..-
T Consensus 44 ~~~~l~~~~TGsGKT~~~~ 62 (367)
T 1hv8_A 44 EYNIVAQARTGSGKTASFA 62 (367)
T ss_dssp CSEEEEECCSSSSHHHHHH
T ss_pred CCCEEEECCCCChHHHHHH
Confidence 4688899999999998753
No 394
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=56.80 E-value=7.5 Score=38.61 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=19.3
Q ss_pred CCCEEEEEcCCCCcHHHHH--HHHhccc
Q 010471 477 ANEVVAIVGLSGSGKSTFV--NLLLRLY 502 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~--kLL~g~y 502 (510)
.|+-+.+++|+|||||... -++..+.
T Consensus 63 ~~~~~lv~apTGsGKT~~~~~~~~~~~~ 90 (412)
T 3fht_A 63 PPQNLIAQSQSGTGKTAAFVLAMLSQVE 90 (412)
T ss_dssp SCCCEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CCCeEEEECCCCchHHHHHHHHHHHHhh
Confidence 3588999999999999864 3444443
No 395
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=56.08 E-value=6.5 Score=39.57 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 478 NEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 478 Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
.-.+-|.|++|+||+++++.+-..-+
T Consensus 160 ~~~vli~Ge~GtGK~~lAr~ih~~s~ 185 (387)
T 1ny5_A 160 ECPVLITGESGVGKEVVARLIHKLSD 185 (387)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCeEEecCCCcCHHHHHHHHHHhcC
Confidence 34568999999999999999876543
No 396
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=55.20 E-value=6.3 Score=39.40 Aligned_cols=27 Identities=33% Similarity=0.460 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcccC
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~ 503 (510)
....+.|.|+||+||+++++++-..-.
T Consensus 151 ~~~~vli~GesGtGKe~lAr~ih~~s~ 177 (368)
T 3dzd_A 151 SKAPVLITGESGTGKEIVARLIHRYSG 177 (368)
T ss_dssp SCSCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cchhheEEeCCCchHHHHHHHHHHhcc
Confidence 445688999999999999999876543
No 397
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=54.93 E-value=6.9 Score=42.15 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=17.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHH
Q 010471 478 NEVVAIVGLSGSGKSTFVNLL 498 (510)
Q Consensus 478 Ge~vAIVG~SGSGKSTL~kLL 498 (510)
+..+.|.||.|+||||++.-+
T Consensus 195 ~~~~li~GppGTGKT~~~~~~ 215 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATI 215 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHH
Confidence 568899999999999876443
No 398
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=54.67 E-value=6.7 Score=38.96 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=16.4
Q ss_pred CCCEEEEEcCCCCcHHHHH
Q 010471 477 ANEVVAIVGLSGSGKSTFV 495 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~ 495 (510)
.|+-+.+++|+|||||+..
T Consensus 57 ~~~~~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 57 TGRDILARAKNGTGKTAAF 75 (400)
T ss_dssp HTCCEEEECCTTSCHHHHH
T ss_pred cCCCEEEECCCCcHHHHHH
Confidence 5677999999999999854
No 399
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=54.02 E-value=7.3 Score=38.31 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=15.5
Q ss_pred CCEEEEEcCCCCcHHHHH
Q 010471 478 NEVVAIVGLSGSGKSTFV 495 (510)
Q Consensus 478 Ge~vAIVG~SGSGKSTL~ 495 (510)
++-+.+++|+|||||...
T Consensus 44 ~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 477889999999999854
No 400
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=53.68 E-value=5.6 Score=39.75 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=17.1
Q ss_pred eeCCCEEEEEcCCCCcHHHH
Q 010471 475 IEANEVVAIVGLSGSGKSTF 494 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL 494 (510)
+..|+-+-+++|+|||||..
T Consensus 49 i~~~~~~lv~a~TGsGKT~~ 68 (417)
T 2i4i_A 49 IKEKRDLMACAQTGSGKTAA 68 (417)
T ss_dssp HHTTCCEEEECCTTSCHHHH
T ss_pred HccCCCEEEEcCCCCHHHHH
Confidence 44688899999999999984
No 401
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=53.05 E-value=5.8 Score=39.54 Aligned_cols=20 Identities=25% Similarity=0.185 Sum_probs=17.1
Q ss_pred eCCCEEEEEcCCCCcHHHHH
Q 010471 476 EANEVVAIVGLSGSGKSTFV 495 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~ 495 (510)
..|+-+.+++++|||||+..
T Consensus 75 ~~~~~~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 75 IKGYDVIAQAQSGTGKTATF 94 (414)
T ss_dssp HTTCCEEECCCSCSSSHHHH
T ss_pred hCCCCEEEECCCCCcccHHH
Confidence 35788999999999999863
No 402
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=52.27 E-value=5.2 Score=51.00 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=22.2
Q ss_pred EeeCCCEEEEEcCCCCcHHHHH-HHHhcc
Q 010471 474 TIEANEVVAIVGLSGSGKSTFV-NLLLRL 501 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~-kLL~g~ 501 (510)
-+..|+-+-+|||+|+|||+++ +.|.++
T Consensus 1300 ll~~~~pvLL~GptGtGKT~li~~~L~~l 1328 (3245)
T 3vkg_A 1300 WLSEHRPLILCGPPGSGKTMTLTSTLRAF 1328 (3245)
T ss_dssp HHHTTCCCEEESSTTSSHHHHHHHHGGGC
T ss_pred HHHCCCcEEEECCCCCCHHHHHHHHHHhC
Confidence 3568899999999999999776 555544
No 403
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=51.50 E-value=8.7 Score=37.54 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=18.5
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHH
Q 010471 472 CLTIEANEVVAIVGLSGSGKSTFVN 496 (510)
Q Consensus 472 sltI~~Ge~vAIVG~SGSGKSTL~k 496 (510)
+..|..-+++||-|+=|-||||..-
T Consensus 42 ~~~i~~aKVIAIaGKGGVGKTTtav 66 (314)
T 3fwy_A 42 ADKITGAKVFAVYGKGGIGKSTTSS 66 (314)
T ss_dssp -----CCEEEEEECSTTSSHHHHHH
T ss_pred ccCCCCceEEEEECCCccCHHHHHH
Confidence 4678888999999999999999873
No 404
>2faf_A Phosphoenolpyruvate carboxykinase; pepck, phosphoryl transfer, lyase; HET: 20S EPE 1PE; 1.70A {Gallus gallus} PDB: 2fah_A* 2qzy_A*
Probab=50.94 E-value=3.2 Score=43.59 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=20.0
Q ss_pred EEeeCCCEEEEE--cCCCCcHHHHHHHH
Q 010471 473 LTIEANEVVAIV--GLSGSGKSTFVNLL 498 (510)
Q Consensus 473 ltI~~Ge~vAIV--G~SGSGKSTL~kLL 498 (510)
++=|.|++.=|. +|||||||||+.+.
T Consensus 256 vt~p~g~~~yiaaAfPSacGKTnlAMl~ 283 (608)
T 2faf_A 256 VTSPSGEKRYMAAAFPSACGKTNLAMMT 283 (608)
T ss_dssp EECTTSCEEEEEEECSSCTTSCCGGGCC
T ss_pred ecCCCCcEEEEEEecccccchhhHhhcC
Confidence 455688866554 99999999998763
No 405
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=50.81 E-value=6.3 Score=39.61 Aligned_cols=19 Identities=32% Similarity=0.524 Sum_probs=15.6
Q ss_pred CCCEEEEEcCCCCcHHHHH
Q 010471 477 ANEVVAIVGLSGSGKSTFV 495 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~ 495 (510)
.|+-+.+++|+|||||...
T Consensus 35 ~~~~~lv~apTGsGKT~~~ 53 (414)
T 3oiy_A 35 QGKSFTMVAPTGVGKTTFG 53 (414)
T ss_dssp TTCCEECCSCSSSSHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHH
Confidence 4566789999999999943
No 406
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=50.29 E-value=7.2 Score=36.99 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=17.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc
Q 010471 478 NEVVAIVGLSGSGKSTFVNLLLR 500 (510)
Q Consensus 478 Ge~vAIVG~SGSGKSTL~kLL~g 500 (510)
|+...+++++|||||..+-+++.
T Consensus 128 ~~~~ll~~~tGsGKT~~~~~~~~ 150 (282)
T 1rif_A 128 NRRRILNLPTSAGRSLIQALLAR 150 (282)
T ss_dssp HSEEEECCCTTSCHHHHHHHHHH
T ss_pred cCCeEEEcCCCCCcHHHHHHHHH
Confidence 45567899999999999855443
No 407
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=50.01 E-value=8.9 Score=36.99 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCCcHHHHH--HHHhcccC
Q 010471 478 NEVVAIVGLSGSGKSTFV--NLLLRLYE 503 (510)
Q Consensus 478 Ge~vAIVG~SGSGKSTL~--kLL~g~y~ 503 (510)
|+-+.+.+++|||||... -++.++..
T Consensus 131 ~~~~l~~a~TGsGKT~a~~lp~l~~l~~ 158 (300)
T 3fmo_B 131 PQNLIAQSQSGTGKTAAFVLAMLSQVEP 158 (300)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHCCT
T ss_pred CCeEEEECCCCCCccHHHHHHHHHhhhc
Confidence 488999999999999753 55555543
No 408
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=49.90 E-value=10 Score=38.96 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=16.5
Q ss_pred CCCEEEEEcCCCCcHHHHH
Q 010471 477 ANEVVAIVGLSGSGKSTFV 495 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~ 495 (510)
+|+-+-+.|++|||||...
T Consensus 130 ~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 130 PPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp SCCEEEEECCSSSSHHHHH
T ss_pred CCCcEEEEcCCCCchhHHH
Confidence 4589999999999999863
No 409
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=49.50 E-value=6 Score=42.97 Aligned_cols=23 Identities=35% Similarity=0.356 Sum_probs=19.2
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHH
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVN 496 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~k 496 (510)
.+..|+.+.++|++|||||+.+-
T Consensus 228 ~L~~~~~vlv~ApTGSGKT~a~~ 250 (666)
T 3o8b_A 228 VPQSFQVAHLHAPTGSGKSTKVP 250 (666)
T ss_dssp CCSSCEEEEEECCTTSCTTTHHH
T ss_pred HHHcCCeEEEEeCCchhHHHHHH
Confidence 34588999999999999997654
No 410
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=49.16 E-value=9.8 Score=36.57 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=21.7
Q ss_pred CCCEEEEEcC-CCCcHHHHHHHHhcccC
Q 010471 477 ANEVVAIVGL-SGSGKSTFVNLLLRLYE 503 (510)
Q Consensus 477 ~Ge~vAIVG~-SGSGKSTL~kLL~g~y~ 503 (510)
++++++++|. .|.||||++--|+..+.
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA 118 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVIS 118 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHH
Confidence 5689999986 58999999987776553
No 411
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=49.04 E-value=5 Score=43.26 Aligned_cols=28 Identities=11% Similarity=0.163 Sum_probs=22.3
Q ss_pred eeCCCEEEEEcCCCCcHHHH--HHHHhccc
Q 010471 475 IEANEVVAIVGLSGSGKSTF--VNLLLRLY 502 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL--~kLL~g~y 502 (510)
+..|+-+-+++++|||||+. +.+|.++.
T Consensus 183 l~~g~dvlv~a~TGSGKT~~~~lpil~~l~ 212 (618)
T 2whx_A 183 FRKKRLTIMDLHPGAGKTKRILPSIVREAL 212 (618)
T ss_dssp GSTTCEEEECCCTTSSTTTTHHHHHHHHHH
T ss_pred HhcCCeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45799999999999999995 55665544
No 412
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=49.02 E-value=7.3 Score=44.50 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=18.7
Q ss_pred eeCCCEEEEEcCCCCcHHHHHH
Q 010471 475 IEANEVVAIVGLSGSGKSTFVN 496 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL~k 496 (510)
+..|+-+.+++|+|||||++.-
T Consensus 51 il~g~~vlv~apTGsGKTlv~~ 72 (997)
T 4a4z_A 51 LEQGDSVFVAAHTSAGKTVVAE 72 (997)
T ss_dssp HHTTCEEEEECCTTSCSHHHHH
T ss_pred HHcCCCEEEEECCCCcHHHHHH
Confidence 4578999999999999998643
No 413
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=48.76 E-value=8 Score=38.57 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=17.4
Q ss_pred eeCCCEEEEEcCCCCcHHHHH
Q 010471 475 IEANEVVAIVGLSGSGKSTFV 495 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL~ 495 (510)
+-.|+-+.+++++|||||...
T Consensus 71 i~~~~~~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 71 IIKGRDVIAQSQSGTGKTATF 91 (410)
T ss_dssp HHTTCCEEEECCTTSSHHHHH
T ss_pred HhCCCCEEEECCCCCCchHHH
Confidence 346788999999999999654
No 414
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=48.62 E-value=8.1 Score=38.07 Aligned_cols=19 Identities=26% Similarity=0.209 Sum_probs=16.1
Q ss_pred CCCEEEEEcCCCCcHHHHH
Q 010471 477 ANEVVAIVGLSGSGKSTFV 495 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~ 495 (510)
.|+-+.+++|+|||||...
T Consensus 44 ~~~~~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 44 LGMDVLCQAKSGMGKTAVF 62 (391)
T ss_dssp TTCCEEEECSSCSSHHHHH
T ss_pred cCCcEEEECCCCCcHHHHH
Confidence 4677889999999999854
No 415
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=48.57 E-value=10 Score=39.53 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=18.7
Q ss_pred CCEEEEEcCCCCcHHHHH--HHHhccc
Q 010471 478 NEVVAIVGLSGSGKSTFV--NLLLRLY 502 (510)
Q Consensus 478 Ge~vAIVG~SGSGKSTL~--kLL~g~y 502 (510)
++.+-+++++|||||... -++..+.
T Consensus 158 ~~~~ll~apTGsGKT~~~~~~il~~l~ 184 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFALTMLSRVD 184 (508)
T ss_dssp CCCEEEECCSSTTSHHHHHHHHHHHSC
T ss_pred CCCEEEECCCCccHHHHHHHHHHHHHH
Confidence 488999999999999853 3444443
No 416
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=47.46 E-value=13 Score=36.23 Aligned_cols=29 Identities=14% Similarity=0.200 Sum_probs=25.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~ 505 (510)
.|-.|.+=|.=||||||.++.|..-.+|.
T Consensus 85 ~~vlIvfEG~DgAGKgt~Ik~L~e~Ldpr 113 (304)
T 3czq_A 85 KRVMAVFEGRDAAGKGGAIHATTANMNPR 113 (304)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSCTT
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhccc
Confidence 46678888999999999999999999886
No 417
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=46.18 E-value=9.9 Score=38.19 Aligned_cols=26 Identities=19% Similarity=0.055 Sum_probs=20.8
Q ss_pred eCCCEEEEE-cCCCCcHHHHHHHHhcc
Q 010471 476 EANEVVAIV-GLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 476 ~~Ge~vAIV-G~SGSGKSTL~kLL~g~ 501 (510)
+++++++++ |+-|.||||++-.|+..
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~ 132 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHA 132 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHH
Confidence 357889999 78889999998776643
No 418
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=46.02 E-value=9 Score=37.74 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=16.1
Q ss_pred CCCEEEEEcCCCCcHHHHH
Q 010471 477 ANEVVAIVGLSGSGKSTFV 495 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~ 495 (510)
.|+-+.+++|+|||||...
T Consensus 57 ~~~~~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 57 EGHDVLAQAQSGTGKTGTF 75 (394)
T ss_dssp HTCCEEECCCSSHHHHHHH
T ss_pred CCCCEEEECCCCChHHHHH
Confidence 4677899999999999853
No 419
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=44.74 E-value=13 Score=41.43 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=17.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHH
Q 010471 478 NEVVAIVGLSGSGKSTFVNLL 498 (510)
Q Consensus 478 Ge~vAIVG~SGSGKSTL~kLL 498 (510)
+..+.|.|+.|+||||++.-+
T Consensus 371 ~~~~lI~GppGTGKT~ti~~~ 391 (800)
T 2wjy_A 371 RPLSLIQGPPGTGKTVTSATI 391 (800)
T ss_dssp SSEEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHH
Confidence 568889999999999876433
No 420
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=44.43 E-value=12 Score=40.49 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=18.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHh
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLL 499 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~ 499 (510)
.|+-+-+++|+|||||+..-+.+
T Consensus 27 ~g~~~iv~~~TGsGKTl~~~~~i 49 (696)
T 2ykg_A 27 KGKNTIICAPTGCGKTFVSLLIC 49 (696)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHH
T ss_pred cCCCEEEEcCCCchHHHHHHHHH
Confidence 47788999999999999765443
No 421
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=43.34 E-value=9.4 Score=44.11 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=19.6
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHH
Q 010471 475 IEANEVVAIVGLSGSGKSTFVNL 497 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL~kL 497 (510)
+..|+-+.++|++|||||+..-+
T Consensus 196 i~~g~dvLV~ApTGSGKTlva~l 218 (1108)
T 3l9o_A 196 IDRGESVLVSAHTSAGKTVVAEY 218 (1108)
T ss_dssp HTTTCCEEEECCSSSHHHHHHHH
T ss_pred HHcCCCEEEECCCCCChHHHHHH
Confidence 46789999999999999998643
No 422
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=42.18 E-value=10 Score=43.28 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=18.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHH
Q 010471 476 EANEVVAIVGLSGSGKSTFVN 496 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~k 496 (510)
..|+.+.+++|+|||||+..-
T Consensus 99 ~~g~~vLV~apTGSGKTlva~ 119 (1010)
T 2xgj_A 99 DRGESVLVSAHTSAGKTVVAE 119 (1010)
T ss_dssp HHTCEEEEECCTTSCHHHHHH
T ss_pred HcCCCEEEECCCCCChHHHHH
Confidence 458999999999999999864
No 423
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=42.17 E-value=14 Score=41.09 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=16.4
Q ss_pred CCEEEEEcCCCCcHHHHHH
Q 010471 478 NEVVAIVGLSGSGKSTFVN 496 (510)
Q Consensus 478 Ge~vAIVG~SGSGKSTL~k 496 (510)
+..+.|.||.|+||||.+.
T Consensus 375 ~~~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 375 RPLSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 5688999999999998764
No 424
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=41.27 E-value=14 Score=37.74 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=18.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHh
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLL 499 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~ 499 (510)
..|+.+.|++++|||||...-+++
T Consensus 106 ~~~~~~ll~~~TGsGKT~~~l~~i 129 (472)
T 2fwr_A 106 LVDKRGCIVLPTGSGKTHVAMAAI 129 (472)
T ss_dssp TTTTEEEEECCTTSCHHHHHHHHH
T ss_pred HhcCCEEEEeCCCCCHHHHHHHHH
Confidence 345679999999999998875543
No 425
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=40.53 E-value=7.9 Score=39.02 Aligned_cols=26 Identities=19% Similarity=0.129 Sum_probs=13.4
Q ss_pred eCCCEEEEE-cCCCCcHHHHHHHHhcc
Q 010471 476 EANEVVAIV-GLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 476 ~~Ge~vAIV-G~SGSGKSTL~kLL~g~ 501 (510)
+++++++++ |+-|.||||+.-.|+..
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~ 135 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHA 135 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHH
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHH
Confidence 467899999 78899999988766544
No 426
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=40.10 E-value=15 Score=39.65 Aligned_cols=27 Identities=33% Similarity=0.597 Sum_probs=20.0
Q ss_pred CCCEEEEEcCCCCcHHH-HHHHHhcccC
Q 010471 477 ANEVVAIVGLSGSGKST-FVNLLLRLYE 503 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKST-L~kLL~g~y~ 503 (510)
.....-|.||.|+|||| ++.++..+..
T Consensus 204 ~~~~~lI~GPPGTGKT~ti~~~I~~l~~ 231 (646)
T 4b3f_X 204 QKELAIIHGPPGTGKTTTVVEIILQAVK 231 (646)
T ss_dssp CSSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 44578899999999996 5566665554
No 427
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=39.43 E-value=16 Score=38.23 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=16.0
Q ss_pred CCCEEEEEcCCCCcHHHH
Q 010471 477 ANEVVAIVGLSGSGKSTF 494 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL 494 (510)
.|+-+.+++|+|||||..
T Consensus 110 ~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCCeEEEECCCCCCccHH
Confidence 578899999999999974
No 428
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=38.68 E-value=8.2 Score=42.04 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=17.5
Q ss_pred CCCEEEEEcCCCCcHHHHH
Q 010471 477 ANEVVAIVGLSGSGKSTFV 495 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~ 495 (510)
.|+-+.++|++|||||+..
T Consensus 240 ~g~dvlv~apTGSGKTl~~ 258 (673)
T 2wv9_A 240 KRQLTVLDLHPGAGKTRRI 258 (673)
T ss_dssp TTCEEEECCCTTTTTTTTH
T ss_pred cCCeEEEEeCCCCCHHHHH
Confidence 7999999999999999963
No 429
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=38.01 E-value=15 Score=37.85 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=18.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHh
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLL 499 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~ 499 (510)
.|+-+.+.|++|||||..+-+++
T Consensus 127 ~~~~~ll~~~tGsGKT~~~~~~~ 149 (510)
T 2oca_A 127 VNRRRILNLPTSAGRSLIQALLA 149 (510)
T ss_dssp HHSEEEEECCSTTTHHHHHHHHH
T ss_pred hcCCcEEEeCCCCCHHHHHHHHH
Confidence 45788999999999999875443
No 430
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=37.87 E-value=18 Score=34.96 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=21.3
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhccc
Q 010471 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKSTL~kLL~g~y 502 (510)
....|..+.|+|| ||+||++-|+.-+
T Consensus 101 ~~~~~r~ivl~GP---gK~tl~~~L~~~~ 126 (295)
T 1kjw_A 101 EVHYARPIIILGP---TKDRANDDLLSEF 126 (295)
T ss_dssp ECCSCCCEEEEST---THHHHHHHHHHHC
T ss_pred cCCCCCEEEEECC---CHHHHHHHHHhhC
Confidence 3467899999999 7999998887644
No 431
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=37.02 E-value=14 Score=34.60 Aligned_cols=22 Identities=32% Similarity=0.279 Sum_probs=15.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 010471 480 VVAIVGLSGSGKSTFVNLLLRL 501 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL~g~ 501 (510)
..-.=|+.|+||||++--|+..
T Consensus 30 I~v~s~kGGvGKTT~a~~LA~~ 51 (267)
T 3k9g_A 30 ITIASIKGGVGKSTSAIILATL 51 (267)
T ss_dssp EEECCSSSSSCHHHHHHHHHHH
T ss_pred EEEEeCCCCchHHHHHHHHHHH
Confidence 3344567899999998777643
No 432
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=36.99 E-value=14 Score=39.36 Aligned_cols=24 Identities=33% Similarity=0.281 Sum_probs=19.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHh
Q 010471 476 EANEVVAIVGLSGSGKSTFVNLLL 499 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kLL~ 499 (510)
-.|+-+.+++|+|+|||.+..+.+
T Consensus 57 l~g~d~lv~~pTGsGKTl~~~lpa 80 (591)
T 2v1x_A 57 MAGKEVFLVMPTGGGKSLCYQLPA 80 (591)
T ss_dssp HTTCCEEEECCTTSCTTHHHHHHH
T ss_pred HcCCCEEEEECCCChHHHHHHHHH
Confidence 358889999999999998765443
No 433
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=35.93 E-value=11 Score=39.40 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=17.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHH
Q 010471 477 ANEVVAIVGLSGSGKSTFVNL 497 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kL 497 (510)
.|+-+.+++|+|||||.+..+
T Consensus 39 ~g~d~lv~apTGsGKTl~~~l 59 (523)
T 1oyw_A 39 SGRDCLVVMPTGGGKSLCYQI 59 (523)
T ss_dssp TTCCEEEECSCHHHHHHHHHH
T ss_pred cCCCEEEECCCCcHHHHHHHH
Confidence 577889999999999985543
No 434
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=35.74 E-value=20 Score=37.85 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=16.0
Q ss_pred CCCEEEEEcCCCCcHHHH
Q 010471 477 ANEVVAIVGLSGSGKSTF 494 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL 494 (510)
.|+-+.+++|+|||||..
T Consensus 59 ~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 59 EDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCCeEEEEcCCCcHHHHH
Confidence 578899999999999984
No 435
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=35.60 E-value=19 Score=36.46 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=17.4
Q ss_pred eeCCCEEEEEcCCCCcHHHH
Q 010471 475 IEANEVVAIVGLSGSGKSTF 494 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL 494 (510)
+..|+-+-+++++|||||..
T Consensus 90 i~~g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 90 ISSGRDLMACAQTGSGKTAA 109 (434)
T ss_dssp HHTTCCEEEECCTTSSHHHH
T ss_pred HhcCCCEEEECCCCCCchHH
Confidence 34788999999999999984
No 436
>1eaq_A RUNT-related transcription factor 1; transcription/DNA, acute myeloid leukemia, AML, RUNX1, RUNT domain, chloride binding, IG fold; HET: MSE; 1.25A {Mus musculus} SCOP: b.2.5.6 PDB: 1ean_A 1eao_A* 2j6w_A 1e50_A 1h9d_A* 1ljm_A 1cmo_A 1hjc_A* 1hjb_C* 1io4_C 1co1_A
Probab=34.22 E-value=7.9 Score=32.07 Aligned_cols=11 Identities=64% Similarity=0.872 Sum_probs=9.9
Q ss_pred EEEcCCCCcHH
Q 010471 482 AIVGLSGSGKS 492 (510)
Q Consensus 482 AIVG~SGSGKS 492 (510)
-.||+||-|||
T Consensus 90 RFvgRSGRGKs 100 (140)
T 1eaq_A 90 RFVGRSGRGKS 100 (140)
T ss_dssp EECSCCCTTCC
T ss_pred cccccCCCCcc
Confidence 47999999998
No 437
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=32.47 E-value=17 Score=34.20 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=18.2
Q ss_pred EeeCCCEEEEEcCCCCcHHH
Q 010471 474 TIEANEVVAIVGLSGSGKST 493 (510)
Q Consensus 474 tI~~Ge~vAIVG~SGSGKST 493 (510)
.|++|+.+|.||.+|.|.||
T Consensus 142 ~V~~Gq~IG~vG~tg~g~st 161 (245)
T 3tuf_B 142 KVKQNQVIGKSGKNLYSEDS 161 (245)
T ss_dssp EECTTCEEEECBCCSTTGGG
T ss_pred EECCCCEEEEeCCcCCCCCC
Confidence 79999999999999988776
No 438
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=29.17 E-value=17 Score=37.80 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHH-hcccC
Q 010471 480 VVAIVGLSGSGKSTFVNLL-LRLYE 503 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kLL-~g~y~ 503 (510)
-+-|+|++|+ ||+|++.+ .++.+
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~p 264 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAP 264 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCS
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCC
Confidence 6999999999 99999999 77643
No 439
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=28.78 E-value=14 Score=33.11 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=16.4
Q ss_pred EeeCCCEEEEEcCCC------CcHHH
Q 010471 474 TIEANEVVAIVGLSG------SGKST 493 (510)
Q Consensus 474 tI~~Ge~vAIVG~SG------SGKST 493 (510)
+|++||.+|.||.|| +|+||
T Consensus 92 ~V~~Gq~IG~vG~tg~~~~~~tG~st 117 (182)
T 3it5_A 92 QVSADTKLGVYAGNINTALCEGGSST 117 (182)
T ss_dssp EECTTCEEEEECSSHHHHTTTSCCCS
T ss_pred EEcCCCEEEeecCcCccccccCCCcC
Confidence 689999999999965 56665
No 440
>3moe_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP; gluconeogenesis, lyase; HET: GTP SPV 1PE; 1.25A {Rattus norvegicus} PDB: 3mof_A* 3moh_A* 3dtb_A* 2qey_A* 2qf1_A* 2qew_A* 2rk7_A 2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A* 3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* ...
Probab=28.44 E-value=29 Score=36.57 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=21.1
Q ss_pred EEeeCCCEEEE--EcCCCCcHHHHHHHH
Q 010471 473 LTIEANEVVAI--VGLSGSGKSTFVNLL 498 (510)
Q Consensus 473 ltI~~Ge~vAI--VG~SGSGKSTL~kLL 498 (510)
+|=|.|++.=| --||+||||+|+.|.
T Consensus 272 it~P~G~~~yiaaAFPSaCGKTnlAMl~ 299 (624)
T 3moe_A 272 ITNPEGKKKYLAAAFPSACGKTNLAMMN 299 (624)
T ss_dssp EECTTSCEEEEEEECCTTSSHHHHHTCC
T ss_pred ecCCCCcEEEEEEEcccccccccHhhcC
Confidence 45589998766 559999999999764
No 441
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=26.18 E-value=20 Score=41.07 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=16.5
Q ss_pred eeCCCEEEEEcCCCCcHHH
Q 010471 475 IEANEVVAIVGLSGSGKST 493 (510)
Q Consensus 475 I~~Ge~vAIVG~SGSGKST 493 (510)
+-.|+-+.+++|+|||||+
T Consensus 68 il~g~dvlv~apTGSGKTl 86 (1054)
T 1gku_B 68 ILRKESFAATAPTGVGKTS 86 (1054)
T ss_dssp HHTTCCEECCCCBTSCSHH
T ss_pred HHhCCCEEEEcCCCCCHHH
Confidence 3468899999999999996
No 442
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=24.95 E-value=32 Score=39.62 Aligned_cols=18 Identities=33% Similarity=0.556 Sum_probs=15.4
Q ss_pred CCEEEEEcCCCCcHHHHH
Q 010471 478 NEVVAIVGLSGSGKSTFV 495 (510)
Q Consensus 478 Ge~vAIVG~SGSGKSTL~ 495 (510)
|+-+.+++++|||||+..
T Consensus 93 g~dvlv~ApTGSGKTl~~ 110 (1104)
T 4ddu_A 93 GKSFTMVAPTGVGKTTFG 110 (1104)
T ss_dssp TCCEEECCSTTCCHHHHH
T ss_pred CCCEEEEeCCCCcHHHHH
Confidence 667889999999999944
No 443
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=24.58 E-value=41 Score=35.44 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=17.9
Q ss_pred CEEEEEcCCCCcHHHHH-HHHhccc
Q 010471 479 EVVAIVGLSGSGKSTFV-NLLLRLY 502 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~-kLL~g~y 502 (510)
+.+.+++++|||||..+ .++.+++
T Consensus 199 ~~~ll~~~TGsGKT~~~~~~~~~l~ 223 (590)
T 3h1t_A 199 KRSLITMATGTGKTVVAFQISWKLW 223 (590)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CceEEEecCCCChHHHHHHHHHHHH
Confidence 56889999999999875 4444443
No 444
>1svp_A Sindbis virus capsid protein; chymotrypsin-like serine, mutant, coat protein, viral protein; 2.00A {Sindbis virus} SCOP: b.47.1.3 PDB: 1kxb_A 1kxa_A 2snw_A 1kxc_A 1kxd_A 1kxe_A 2snv_A 1z8y_Q 1wyk_A
Probab=23.89 E-value=40 Score=28.21 Aligned_cols=32 Identities=38% Similarity=0.600 Sum_probs=26.2
Q ss_pred cccEEEEeeeEECC------CCCCCCccccceEEeeCCCEEEEE
Q 010471 447 MGHVQFVNISFHYP------SRPTVPILNHVCLTIEANEVVAIV 484 (510)
Q Consensus 447 ~~~I~f~nVsF~Y~------~~~~~~vL~nisltI~~Ge~vAIV 484 (510)
.|.++++|=.|.-| +..++|+++| +|++||||
T Consensus 88 hGaVqy~~grftvp~GvG~~GDSGRpI~DN------~GrVVaiv 125 (161)
T 1svp_A 88 HGAVQYSGGRFTIPRGVGGRGDAGRPIMDN------SGRVVAIV 125 (161)
T ss_dssp TEEEEEETTEEEEETTSCCTTCTTCEEECT------TSCEEEEE
T ss_pred cceEEEeCCeEEecccCCCCCCCCCccCcC------CCcEEEEE
Confidence 47899999999876 3456789996 89999998
No 445
>1vcp_A Semliki forest virus capsid protein; virus coat protein, polyprotein, transmembrane, glycoprotein, nucleocapsid protein, viral protein; 3.00A {Semliki forest virus} SCOP: b.47.1.3 PDB: 1dyl_A 1vcq_A
Probab=22.75 E-value=44 Score=27.51 Aligned_cols=32 Identities=38% Similarity=0.578 Sum_probs=26.0
Q ss_pred cccEEEEeeeEECC------CCCCCCccccceEEeeCCCEEEEE
Q 010471 447 MGHVQFVNISFHYP------SRPTVPILNHVCLTIEANEVVAIV 484 (510)
Q Consensus 447 ~~~I~f~nVsF~Y~------~~~~~~vL~nisltI~~Ge~vAIV 484 (510)
.|.++++|=.|.-| ++.++|+++| +|++||||
T Consensus 79 hGaVqy~~grftvp~G~g~~GdSGrpI~Dn------~GrVVaIV 116 (149)
T 1vcp_A 79 HGAVQYSGGRFTIPTGAGKPGDSGRPIFDN------KGRVVAIV 116 (149)
T ss_dssp TEEEEEETTEEEEETTSCCTTCTTCEEECT------TSCEEEEE
T ss_pred cceEEEeCCeEEecccCCCCCCCCCccCcC------CCcEEEEE
Confidence 46899999999876 3456788986 89999998
No 446
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=22.55 E-value=38 Score=30.55 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=14.8
Q ss_pred CEEEEEcCCCCcHHHHHHH
Q 010471 479 EVVAIVGLSGSGKSTFVNL 497 (510)
Q Consensus 479 e~vAIVG~SGSGKSTL~kL 497 (510)
..+-+.+.+|.||||.+--
T Consensus 29 g~i~v~tG~GkGKTTaA~G 47 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFG 47 (196)
T ss_dssp CCEEEEESSSSCHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3566888899999999743
No 447
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=21.86 E-value=47 Score=36.55 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=17.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHH
Q 010471 476 EANEVVAIVGLSGSGKSTFVNL 497 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kL 497 (510)
-.|+-+-+++++|||||...-+
T Consensus 261 l~~~~~ll~~~TGsGKTl~~~~ 282 (797)
T 4a2q_A 261 INGKNALICAPTGSGKTFVSIL 282 (797)
T ss_dssp HTTCCEEEECCTTSCHHHHHHH
T ss_pred HhCCCEEEEeCCCChHHHHHHH
Confidence 3577899999999999976533
No 448
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=21.85 E-value=43 Score=34.89 Aligned_cols=29 Identities=31% Similarity=0.526 Sum_probs=25.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 010471 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (510)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTL~kLL~g~y~p~ 505 (510)
.|-.|.+=|.=||||+|.++.|..-.+|.
T Consensus 42 ~~vlIvfEG~D~AGKg~~Ik~l~~~l~pr 70 (500)
T 3czp_A 42 FPVIILINGIEGAGKGETVKLLNEWMDPR 70 (500)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHSCGG
T ss_pred CCEEEEEeCcCCCCHHHHHHHHHHhcCcc
Confidence 45677888999999999999999888775
No 449
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=21.26 E-value=42 Score=37.09 Aligned_cols=18 Identities=33% Similarity=0.418 Sum_probs=14.9
Q ss_pred EEEEEcCCCCcHHHHHHH
Q 010471 480 VVAIVGLSGSGKSTFVNL 497 (510)
Q Consensus 480 ~vAIVG~SGSGKSTL~kL 497 (510)
-+-+.|++|||||...-+
T Consensus 391 ~~Ll~a~TGSGKTlvall 408 (780)
T 1gm5_A 391 NRLLQGDVGSGKTVVAQL 408 (780)
T ss_dssp CCEEECCSSSSHHHHHHH
T ss_pred cEEEEcCCCCCHHHHHHH
Confidence 567999999999987644
No 450
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=20.15 E-value=45 Score=40.39 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=18.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHH
Q 010471 476 EANEVVAIVGLSGSGKSTFVNL 497 (510)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTL~kL 497 (510)
..++-+-+..|+|||||+++-+
T Consensus 940 ~~~~nvlv~APTGSGKTliael 961 (1724)
T 4f92_B 940 NSDDNVFVGAPTGSGKTICAEF 961 (1724)
T ss_dssp SCCSCEEEECCTTSCCHHHHHH
T ss_pred cCCCcEEEEeCCCCCchHHHHH
Confidence 4678899999999999998754
Done!