BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010472
(509 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 77/335 (22%), Positives = 128/335 (38%), Gaps = 104/335 (31%)
Query: 73 RQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKR 132
RQ+ +L + +V V DAR P AY + + K T++L+NK D+ K+
Sbjct: 13 RQIKDLLRLVNTVVEVRDARAPF-----ATSAYGVDFSR-KETIILLNKVDIADEKTTKK 66
Query: 133 WAKYFKDHDILFVFWXXXXXXXXLEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQ 192
W ++FK +GK V T + + R+ LL +L
Sbjct: 67 WVEFFKK-----------------QGKRVITTHKGE--------------PRKVLLKKLS 95
Query: 193 YEAEEIVKMRRQAGCSSTGKSNVQSVDESFAGNVAPKNVIVGFVGYPNVGKSSTINALVG 252
++ R A + +IVG PN GKS+ IN L G
Sbjct: 96 FD--------RLA-----------------------RVLIVG---VPNTGKSTIINKLKG 121
Query: 253 QKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVAS----GVLPIDRM 308
++ + V + PG TK Q + + + D PG+++ +I D+ A G LP++R+
Sbjct: 122 KRASSVGAQPGITKGIQWFSLENGVKILDTPGILYK--NIFSEDLAAKLLLVGSLPVERI 179
Query: 309 TEHR---QAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYVA 365
+ R +A ++ A + IE+ E + RG +
Sbjct: 180 EDQRIFERAFEIFARSIG---IESSFS-------------------EFFEDFARKRGLLK 217
Query: 366 SSGLPDETRAARIILKDFIDGKLPH--FEMPPGMS 398
G+PD RA + + GK FE P ++
Sbjct: 218 KGGVPDIERALMLFFTEVAQGKAGRVSFERPEDIT 252
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 127/325 (39%), Gaps = 62/325 (19%)
Query: 73 RQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKR 132
R++ L+ D++ +VDAR P+ R P +E +I K K ++L+NKAD +V ++
Sbjct: 15 REVTEKLKLIDIVYELVDARIPMSSRNPMIE----DILKNKPRIMLLNKADKADAAVTQQ 70
Query: 133 WAKYFKDHDILFVFWXXXXXXXXLEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQ 192
W K+H E + + Q ++ V + +E+L
Sbjct: 71 W----KEH---------------FENQGIRSLSINSVNGQGLNQI---VPASKEILQ--- 105
Query: 193 YEAEEIVKMRRQAGCSSTGKSNVQSVDESFAGNVAPKNVIVGFVGYPNVGKSSTINALVG 252
E+ +MR A V P+ + +G PNVGKS+ IN L
Sbjct: 106 ---EKFDRMR--------------------AKGVKPRAIRALIIGIPNVGKSTLINRLAK 142
Query: 253 QKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVLPIDRMTEHR 312
+ PG T Q + + ++L L D PG+++P F + + I +
Sbjct: 143 KNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINL 202
Query: 313 QAVQVVANR-VPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYVASSGLPD 371
Q V V R + H E + + Y P EL A RG + S GL +
Sbjct: 203 QDVAVFGLRFLEEHYPERL-------KERYGLDEIPEDIAELFDAIGEKRGCLMSGGLIN 255
Query: 372 ETRAARIILKDFIDGKLPH--FEMP 394
+ +I++D K FE P
Sbjct: 256 YDKTTEVIIRDIRTEKFGRLSFEQP 280
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%)
Query: 233 VGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFS 291
V FVG NVGKSS +NAL +K V+ TPGKT+ +++ K D PG + S
Sbjct: 26 VAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVS 84
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 233 VGFVGYPNVGKSSTINALVGQKRTGVTST-PGKTKHFQTLIISEKLVLCDCPGLVFPSFS 291
+ G NVGKSS IN+L+ +K TS+ PGKT+ II+++L D PG F S
Sbjct: 26 IALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVS 85
Query: 292 IS 293
S
Sbjct: 86 KS 87
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 10/72 (13%)
Query: 217 SVDESFAGNVAPKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISE- 275
S+D+S+ G +A VG PNVGKS+ +N L+GQK + + T+H I +E
Sbjct: 2 SIDKSYCGFIA-------IVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG 54
Query: 276 --KLVLCDCPGL 285
+ + D PGL
Sbjct: 55 AYQAIYVDTPGL 66
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 210 TGKSNVQSVDESFA-GNVAPKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTK-H 267
T +S V + +S+ G + + V G PN GKS+ +N L+GQ+R V+ PG T+ +
Sbjct: 212 TLRSEVNRLIDSYQHGRIVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDY 271
Query: 268 FQTLIISEKLV--LCDCPGL 285
+ I +K + L D GL
Sbjct: 272 IEECFIHDKTMFRLTDTAGL 291
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 232 IVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISE---KLVLCDCPGLVFP 288
V VG PNVGKS+ +N L+G K ++ P T+ I++E ++V D PGL P
Sbjct: 9 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKP 68
Query: 289 SFSISRY 295
++ +
Sbjct: 69 MDALGEF 75
>pdb|1PUI|A Chain A, Structure Of Engb Gtpase
pdb|1PUI|B Chain B, Structure Of Engb Gtpase
Length = 210
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 233 VGFVGYPNVGKSSTINALVGQKRTGVTS-TPGKTKHFQTLIISEKLVLCDCPG 284
V F G N GKSS +N L QK TS TPG+T+ +++ L D PG
Sbjct: 29 VAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPG 81
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 233 VGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTK---HFQTLIISEKLVLCDCPGL 285
V VG PNVGKS+ NA++ ++R V+ PG T+ + I K V D GL
Sbjct: 183 VAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGL 238
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 233 VGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTK 266
V VG PNVGKS+ N LV +K+ V G T+
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTR 37
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 7/65 (10%)
Query: 223 AGNVAPKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLVLCDC 282
AG + + + + VG PNVGKS+ +N L+ + R VT PG T+ +ISE++V+
Sbjct: 236 AGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRD----VISEEIVI--- 288
Query: 283 PGLVF 287
G++F
Sbjct: 289 RGILF 293
>pdb|4DHE|A Chain A, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
pdb|4DHE|B Chain B, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
Length = 223
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 233 VGFVGYPNVGKSSTINALVGQKRTGVTS-TPGKTKHFQTLII---SEKLV-LCDCPGLVF 287
+ F G N GKS+ IN L QKR S TPG+T+H + +E + L D PG +
Sbjct: 32 IAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGY 91
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 10/70 (14%)
Query: 219 DESFAGNVAPKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISE--- 275
D+S+ G +A VG PNVGKS+ +N L+GQK + + T+H I +E
Sbjct: 1 DKSYCGFIA-------IVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAY 53
Query: 276 KLVLCDCPGL 285
+ + D PGL
Sbjct: 54 QAIYVDTPGL 63
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 235 FVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIIS---EKLVLCDCPGL 285
+G PNVGKSS +NA++G++R V++ G T+ + ++ V+ D G+
Sbjct: 200 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGM 253
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 232 IVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTK 266
+V VG PNVGKS+ N + G++ + V TPG T+
Sbjct: 25 VVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTR 59
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 233 VGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSI 292
V VG PNVGKSS +NA R VT PG T+ ++ +LV+ P V + I
Sbjct: 227 VAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRD----VVESQLVVGGIPVQVLDTAGI 282
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 233 VGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKH----FQTLIISEKLVLCDCPGLVFP 288
V VG PNVGKS+ +N L+G K + ++ G T+ + + +++ D PG+ P
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 71
Query: 289 SFS 291
S
Sbjct: 72 KKS 74
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 233 VGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKH----FQTLIISEKLVLCDCPGLVFP 288
V VG PNVGKS+ +N L+G K + ++ G T+ + + +++ D PG+ P
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 72
Query: 289 SFS 291
S
Sbjct: 73 KKS 75
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 232 IVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTK 266
+V VG PNVGKS+ N + G++ + V TPG T+
Sbjct: 5 VVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTR 39
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 235 FVGYPNVGKSSTINALVGQKRTGVTSTPGKTK 266
+G PNVGKSS +NA +G++R V++ G T+
Sbjct: 180 LIGRPNVGKSSLVNAXLGEERVIVSNVAGTTR 211
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 233 VGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISE---KLVLCDCPGL 285
V VG PNVGKSS N L+ ++ V PG T+ + ++ + +L D GL
Sbjct: 4 VVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGL 59
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 12/61 (19%)
Query: 233 VGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHFQTLIISEKLVLCDCPGL 285
VGFVG+P+VGKS+ ++ L G + T + + PG ++ K+ + D PG+
Sbjct: 75 VGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYK-----GAKIQMLDLPGI 129
Query: 286 V 286
+
Sbjct: 130 I 130
>pdb|4A2I|V Chain V, Cryo-Electron Microscopy Structure Of The 30s Subunit In
Complex With The Yjeq Biogenesis Factor
Length = 277
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 208 SSTGKSNVQSVDESFAGNVAPKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKH 267
SS + ++ ++E+ G ++ F G VGKSS +NAL+G + +T+T + H
Sbjct: 144 SSHTQDGLKPLEEALTGRISI------FAGQSGVGKSSLLNALLGLQNEILTNTAARLYH 197
Query: 268 F 268
F
Sbjct: 198 F 198
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 20/109 (18%)
Query: 180 KVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVDESFAGNVAPKNVIVGFVGYP 239
K Y R + +L E E I K+ ++ S ++N+ S+ G VGY
Sbjct: 147 KFYKRR--INKLMKELESI-KIFKEKSIESNKRNNIPSI---------------GIVGYT 188
Query: 240 NVGKSSTINALVG--QKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGLV 286
N GK+S N+L G QK T K + I + K++L D G +
Sbjct: 189 NSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFI 237
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 231 VIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEK---LVLCDCPGLVF 287
V V G PNVGK+S NAL G K+ V + PG T + + + K + L D PG
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYS 64
Query: 288 PSFS 291
+S
Sbjct: 65 LGYS 68
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 233 VGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII---SEKLVLCDCPGL 285
V VG PNVGK++ NAL G R V + PG T + I+ ++ ++ D PG+
Sbjct: 6 VALVGNPNVGKTTIFNALTGL-RQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGI 60
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 231 VIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEK---LVLCDCPGLVF 287
V V G PNVGK+S NAL G K+ V + PG T + + + K + L D PG
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYS 64
Query: 288 PSFS 291
+S
Sbjct: 65 LGYS 68
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 224 GNVAPKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHF---QTLIISEKLVLC 280
G++ + + V G PN GKSS +NAL G++ VT G T+ I L +
Sbjct: 1 GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHII 60
Query: 281 DCPGLVFPSFSISRYDM 297
D GL S + R +
Sbjct: 61 DTAGLREASDEVERIGI 77
>pdb|2V9P|A Chain A, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|B Chain B, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|C Chain C, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|D Chain D, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|E Chain E, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|F Chain F, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|G Chain G, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|H Chain H, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|I Chain I, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|J Chain J, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|K Chain K, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|L Chain L, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
Length = 305
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 228 PKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHF--QTLIISEKLVLCDCPGL 285
PK + F+G PN GKS N+L+ V S HF +L + ++ D
Sbjct: 124 PKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVDDATHA 183
Query: 286 VFPSFSISRYDMVASGVLPIDRMTEHRQAVQVVA 319
+ F + + + IDR +H+ AVQ+ A
Sbjct: 184 CWRYFDTYLRNALDGYPVSIDR--KHKAAVQIKA 215
>pdb|2GXA|A Chain A, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|B Chain B, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|C Chain C, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|D Chain D, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|E Chain E, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|F Chain F, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|G Chain G, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|H Chain H, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|I Chain I, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|J Chain J, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|K Chain K, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|L Chain L, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
Length = 274
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 228 PKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHF--QTLIISEKLVLCDCPGL 285
PK + F+G PN GKS N+L+ V S HF +L + ++ D
Sbjct: 121 PKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVDDATHA 180
Query: 286 VFPSFSISRYDMVASGVLPIDRMTEHRQAVQVVA 319
+ F + + + IDR +H+ AVQ+ A
Sbjct: 181 CWRYFDTYLRNALDGYPVSIDR--KHKAAVQIKA 212
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 231 VIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEK---LVLCDCPG 284
V V G PNVGK+S NAL G K+ V + PG T + + + K + L D PG
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 235 FVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHF---QTLIISEKLVLCDCPGLVFPSFS 291
G PN GKSS +NAL G++ VT G T+ I L + D GL S
Sbjct: 9 IAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGXPLHIIDTAGLREASDE 68
Query: 292 ISRYDM 297
+ R +
Sbjct: 69 VERIGI 74
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 33.9 bits (76), Expect = 0.24, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 227 APKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKT---KHFQTLIISEKLVLCDCP 283
A K+ + +G PNVGKS+ NAL G+ + + PG T K + EK + D P
Sbjct: 1 AXKSYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLP 59
Query: 284 GL 285
G+
Sbjct: 60 GV 61
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 233 VGFVGYPNVGKSSTINALVGQKRTGVTSTPGKT---KHFQTLIISEKLVLCDCPGL 285
+ +G PNVGKS+ NAL G+ + + PG T K + EK + D PG+
Sbjct: 10 IALIGNPNVGKSTIFNALTGE-NVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 64
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 233 VGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII----SEKLVLCDCPGLV 286
VG VGYPN GKSS + A+ + + P T ++ E+ L D PG++
Sbjct: 160 VGLVGYPNAGKSSLLAAMT-RAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGII 216
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 235 FVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHF---QTLIISEKLVLCDCPGLVFPSFS 291
G PN GKSS +NAL G++ VT G T+ I L + D GL S
Sbjct: 9 IAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDE 68
Query: 292 ISRYDM 297
+ R +
Sbjct: 69 VERIGI 74
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 33.1 bits (74), Expect = 0.41, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 229 KNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKT---KHFQTLIISEKLVLCDCPGL 285
K+ + +G PNVGKS+ NAL G+ + + PG T K + EK + D PG+
Sbjct: 2 KSYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 60
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 33.1 bits (74), Expect = 0.41, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 229 KNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKT---KHFQTLIISEKLVLCDCPGL 285
K+ + +G PNVGKS+ NAL G+ + + PG T K + EK + D PG+
Sbjct: 2 KSYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 60
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 20/109 (18%)
Query: 180 KVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVDESFAGNVAPKNVIVGFVGYP 239
K Y R + +L E E I K+ ++ S ++N+ S+ G VGY
Sbjct: 147 KFYKRR--INKLMKELESI-KIFKEKSIESNKRNNIPSI---------------GIVGYT 188
Query: 240 NVGKSSTINALVG--QKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGLV 286
N GK+S N+L G QK T K + I + K++L D +
Sbjct: 189 NSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVSFI 237
>pdb|1YR6|A Chain A, Pab0955 Crystal Structure : A Gtpase In Apo Form From
Pyrococcus Abyssi
pdb|1YR7|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gtp-Gamma-S Bound
Form From Pyrococcus Abyssi
pdb|1YR8|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gtp Bound Form
From Pyrococcus Abyssi
pdb|1YR9|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Po4 Bound
Form From Pyrococcus Abyssi
pdb|1YRA|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp Bound Form
From Pyrococcus Abyssi
pdb|1YRA|B Chain B, Pab0955 Crystal Structure : A Gtpase In Gdp Bound Form
From Pyrococcus Abyssi
pdb|1YRB|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi
pdb|1YRB|B Chain B, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi
pdb|2OXR|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi (After Gtp Hydrolysis)
Length = 262
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%)
Query: 24 RPPWNPSMSVEELDDNERQSFLAWRRSLARLEENEKLVL--TPFEKNLDMWRQLWRVLER 81
R + P+ ++ E D + F + + RLE+ VL TP + ++ + L
Sbjct: 75 REGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLME 134
Query: 82 SDLIVMVVDARDPLFYRCPDLEAYAR------EIDKYKRTLLLVNKADLLPFSVRKRWAK 135
+ +VV DP + P+ + R ++ T+ +NK DLL ++R K
Sbjct: 135 NLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRK 194
Query: 136 YFKDHDIL 143
YF+D D L
Sbjct: 195 YFEDIDYL 202
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 229 KNVIVGFVGYPNVGKSSTINALVGQKR-----TGVTSTPGKTKHFQTLIISEKLVLCDCP 283
K + +G +G PN GK++ N L G ++ GVT K F T ++ L D P
Sbjct: 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVT-VERKEGQFST--TDHQVTLVDLP 58
Query: 284 G 284
G
Sbjct: 59 G 59
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
Length = 270
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 229 KNVIVGFVGYPNVGKSSTINALVGQKR-----TGVTSTPGKTKHFQTLIISEKLVLCDCP 283
K + +G +G PN GK++ N L G ++ GVT K F T ++ L D P
Sbjct: 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVT-VERKEGQFST--TDHQVTLVDLP 58
Query: 284 G 284
G
Sbjct: 59 G 59
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 229 KNVIVGFVGYPNVGKSSTINALVGQKR-----TGVTSTPGKTKHFQTLIISEKLVLCDCP 283
K + +G +G PN GK++ N L G ++ GVT K F T ++ L D P
Sbjct: 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVT-VERKEGQFST--TDHQVTLVDLP 58
Query: 284 G 284
G
Sbjct: 59 G 59
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 20/105 (19%)
Query: 180 KVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVDESFAGNVAPKNVIVGFVGYP 239
K Y R + +L E E I K+ ++ S ++N+ S+ G VGY
Sbjct: 147 KFYKRR--INKLMKELESI-KIFKEKSIESNKRNNIPSI---------------GIVGYT 188
Query: 240 NVGKSSTINALVG--QKRTGVTSTPGKTKHFQTLIISEKLVLCDC 282
N GK+S N+L G QK T K + I + K++L D
Sbjct: 189 NSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDT 233
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 70 DMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSV 129
D R L + + L+V +VD D P L + + LL+ NKADL+P SV
Sbjct: 58 DFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVGN----NKVLLVGNKADLIPKSV 113
Query: 130 R----KRWAKY 136
+ K W +Y
Sbjct: 114 KHDKVKHWXRY 124
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 237 GYPNVGKSSTINALVGQKRTGVTSTPGKTKH--FQTLIIS--EKLVLCDCPGL 285
G NVGKSS +NALVGQ + V+ G T ++++ + + L D PGL
Sbjct: 41 GRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGL 93
>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
Length = 369
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 70 DMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSV 129
D L R+ E L+V +VD D P L +A + LL+ NKADLLP SV
Sbjct: 60 DFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAAD----NPILLVGNKADLLPRSV 115
Query: 130 RK----RWAK 135
+ RW +
Sbjct: 116 KYPKLLRWMR 125
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 233 VGFVGYPNVGKSSTINAL 250
VG VG PNVGKS+ NAL
Sbjct: 4 VGIVGLPNVGKSTLFNAL 21
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 233 VGFVGYPNVGKSSTINAL 250
VG VG PNVGKS+ NAL
Sbjct: 4 VGIVGLPNVGKSTLFNAL 21
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 10/73 (13%)
Query: 222 FAGNVAPKNV---IVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLV 278
F G + K++ V +G VGKSST+N+L+G++ V +P + + + +++S +
Sbjct: 25 FFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRV--SPFQAEGLRPVMVSRTMG 82
Query: 279 -----LCDCPGLV 286
+ D PGLV
Sbjct: 83 GFTINIIDTPGLV 95
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 10/73 (13%)
Query: 222 FAGNVAPKNV---IVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLV 278
F G + K++ V +G VGKSST+N+L+G++ V +P + + + +++S +
Sbjct: 25 FFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRV--SPFQAEGLRPVMVSRTMG 82
Query: 279 -----LCDCPGLV 286
+ D PGLV
Sbjct: 83 GFTINIIDTPGLV 95
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 10/73 (13%)
Query: 222 FAGNVAPKNV---IVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLV 278
F G + K++ V +G VGKSST+N+L+G++ V +P + + + +++S +
Sbjct: 25 FFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRV--SPFQAEGLRPVMVSRTMG 82
Query: 279 -----LCDCPGLV 286
+ D PGLV
Sbjct: 83 GFTINIIDTPGLV 95
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 10/73 (13%)
Query: 222 FAGNVAPKNV---IVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLV 278
F G + K++ V +G VGKSST+N+L+G++ V +P + + + +++S +
Sbjct: 24 FFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRV--SPFQAEGLRPVMVSRTMG 81
Query: 279 -----LCDCPGLV 286
+ D PGLV
Sbjct: 82 GFTINIIDTPGLV 94
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 35/56 (62%), Gaps = 7/56 (12%)
Query: 236 VGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEK-----LVLCDCPGLV 286
+G VGKSST+N+++G++ V+ +P +++ + +++S L + D PGL+
Sbjct: 45 MGKGGVGKSSTVNSIIGERV--VSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLI 98
>pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein
pdb|1LNZ|B Chain B, Structure Of The Obg Gtp-Binding Protein
Length = 342
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 19/65 (29%)
Query: 233 VGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTK--HFQTLIIS---------EKLVLCD 281
VG VG+P+VGKS+ ++ V+S K HF TL+ + V D
Sbjct: 161 VGLVGFPSVGKSTLLSV--------VSSAKPKIADYHFTTLVPNLGXVETDDGRSFVXAD 212
Query: 282 CPGLV 286
PGL+
Sbjct: 213 LPGLI 217
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 235 FVGYPNVGKSSTINALV-GQKRTGVTSTPGKTKHFQT--LIISEKLV-LCDCPG---LVF 287
+G PN GK++ NAL +R G + PG T +T ++ E L+ + D PG LV
Sbjct: 6 LIGNPNCGKTTLFNALTNANQRVG--NWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVA 63
Query: 288 PSFSISRYDMVAS 300
+ IS+ + +A+
Sbjct: 64 NAEGISQDEQIAA 76
>pdb|2YKR|W Chain W, 30s Ribosomal Subunit With Rsga Bound In The Presence Of
Gmppnp
Length = 350
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Query: 208 SSTGKSNVQSVDESFAGNVAPKNVIVGFVGYPNVGKSSTINALVGQKR----TGVTSTPG 263
SS + ++ ++E+ G ++ F G VGKSS +NAL+G ++ V+ G
Sbjct: 191 SSHTQDGLKPLEEALTGRISI------FAGQSGVGKSSLLNALLGLQKEILTNDVSDNSG 244
Query: 264 KTKHFQT 270
+H T
Sbjct: 245 LGQHTTT 251
>pdb|2J68|A Chain A, Bacterial Dynamin-Like Protein Bdlp, Gdp Bound
pdb|2J69|A Chain A, Bacterial Dynamin-like Protein Bdlp
pdb|2J69|B Chain B, Bacterial Dynamin-like Protein Bdlp
pdb|2J69|C Chain C, Bacterial Dynamin-like Protein Bdlp
pdb|2J69|D Chain D, Bacterial Dynamin-like Protein Bdlp
pdb|2W6D|A Chain A, Bacterial Dynamin-Like Protein Lipid Tube Bound
pdb|2W6D|B Chain B, Bacterial Dynamin-Like Protein Lipid Tube Bound
Length = 695
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 170 TQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVDESFAGNVAPK 229
T + I D E R E+ L AE I K AG SS+GK +++ E +A K
Sbjct: 7 TDRFIQDLERVAQVRSEMSVCLNKLAETINKAEL-AGDSSSGKLSLERDIEDIT--IASK 63
Query: 230 NVIVGF-----VGYPNVGKSSTINALVGQ 253
N+ G +G GKS+ +NAL+G+
Sbjct: 64 NLQQGVFRLLVLGDMKRGKSTFLNALIGE 92
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 7/55 (12%)
Query: 237 GYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEK-----LVLCDCPGLV 286
G VGKSST+N+++G++ V+ +P +++ + + +S L + D PGL+
Sbjct: 46 GKGGVGKSSTVNSIIGERV--VSISPFQSEGPRPVXVSRSRAGFTLNIIDTPGLI 98
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 233 VGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII--SEKLVLCDCPGLVFPSF 290
+ +G PN GK+S N + G + V + PG T ++ ++ ++ L + D PG+ +
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKKNKDLEIQDLPGI----Y 60
Query: 291 SISRY 295
S+S Y
Sbjct: 61 SMSPY 65
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 233 VGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII--SEKLVLCDCPGLVFPSF 290
+ +G PN GK+S N + G + V + PG T ++ ++ ++ L + D PG+ +
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKKNKDLEIQDLPGI----Y 60
Query: 291 SISRY 295
S+S Y
Sbjct: 61 SMSPY 65
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 233 VGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII--SEKLVLCDCPGLVFPSF 290
+ +G PN GK+S N + G + V + PG T ++ ++ ++ L + D PG+ +
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKKNKDLEIQDLPGI----Y 60
Query: 291 SISRY 295
S+S Y
Sbjct: 61 SMSPY 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,043,908
Number of Sequences: 62578
Number of extensions: 602322
Number of successful extensions: 1597
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1545
Number of HSP's gapped (non-prelim): 70
length of query: 509
length of database: 14,973,337
effective HSP length: 103
effective length of query: 406
effective length of database: 8,527,803
effective search space: 3462288018
effective search space used: 3462288018
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)