Query 010472
Match_columns 509
No_of_seqs 625 out of 2810
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 00:55:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010472.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010472hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1424 Predicted GTP-binding 100.0 6E-87 1.3E-91 687.6 31.9 455 9-488 102-561 (562)
2 KOG2484 GTPase [General functi 100.0 8.5E-36 1.8E-40 300.8 19.5 271 71-396 136-406 (435)
3 KOG2423 Nucleolar GTPase [Gene 100.0 5E-34 1.1E-38 286.1 21.5 271 64-401 194-466 (572)
4 COG1161 Predicted GTPases [Gen 100.0 1.6E-30 3.6E-35 266.4 24.6 276 66-397 19-299 (322)
5 PRK09563 rbgA GTPase YlqF; Rev 100.0 9.4E-30 2E-34 257.4 27.1 270 62-394 4-279 (287)
6 TIGR03596 GTPase_YlqF ribosome 100.0 1.7E-29 3.7E-34 254.1 27.2 262 69-393 9-275 (276)
7 COG1126 GlnQ ABC-type polar am 100.0 7.1E-31 1.5E-35 247.5 8.7 207 226-444 24-239 (240)
8 COG1135 AbcC ABC-type metal io 99.9 5.8E-27 1.2E-31 231.4 9.1 211 226-449 28-250 (339)
9 COG1127 Ttg2A ABC-type transpo 99.9 5.4E-27 1.2E-31 224.4 8.6 208 226-445 30-249 (263)
10 COG1117 PstB ABC-type phosphat 99.9 5.8E-27 1.3E-31 220.3 7.8 195 226-430 29-241 (253)
11 COG1120 FepC ABC-type cobalami 99.9 8.8E-27 1.9E-31 229.0 9.4 203 226-442 24-237 (258)
12 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 1.6E-25 3.4E-30 219.2 12.4 202 226-442 26-236 (254)
13 cd01857 HSR1_MMR1 HSR1/MMR1. 99.9 1.5E-24 3.3E-29 196.5 16.2 141 71-288 1-141 (141)
14 COG3842 PotA ABC-type spermidi 99.9 1.3E-25 2.8E-30 229.8 9.8 210 226-449 27-245 (352)
15 COG1116 TauB ABC-type nitrate/ 99.9 1.5E-25 3.3E-30 216.8 9.5 175 226-413 25-207 (248)
16 COG1125 OpuBA ABC-type proline 99.9 1.3E-25 2.8E-30 216.1 8.2 206 226-444 23-239 (309)
17 COG1124 DppF ABC-type dipeptid 99.9 2.6E-25 5.7E-30 213.6 10.2 211 226-450 29-251 (252)
18 cd01858 NGP_1 NGP-1. Autoanti 99.9 3.5E-24 7.5E-29 197.5 16.8 156 74-285 1-157 (157)
19 COG1136 SalX ABC-type antimicr 99.9 4.7E-25 1E-29 212.8 9.2 180 226-413 27-219 (226)
20 COG1131 CcmA ABC-type multidru 99.9 5.2E-25 1.1E-29 223.2 9.1 189 226-423 27-223 (293)
21 COG3839 MalK ABC-type sugar tr 99.9 1.2E-24 2.7E-29 221.5 10.7 201 226-442 25-235 (338)
22 COG1118 CysA ABC-type sulfate/ 99.9 7.4E-25 1.6E-29 216.1 8.7 216 226-452 24-249 (345)
23 COG3840 ThiQ ABC-type thiamine 99.9 9.7E-25 2.1E-29 200.6 8.7 191 226-426 21-219 (231)
24 COG3638 ABC-type phosphate/pho 99.9 1.7E-24 3.7E-29 206.8 9.9 192 226-424 26-235 (258)
25 COG2884 FtsE Predicted ATPase 99.9 9.1E-24 2E-28 195.5 10.7 187 225-420 23-220 (223)
26 cd04178 Nucleostemin_like Nucl 99.9 8E-23 1.7E-27 191.6 16.5 172 83-285 1-172 (172)
27 PRK13537 nodulation ABC transp 99.9 6.5E-24 1.4E-28 216.6 9.7 187 226-423 29-224 (306)
28 TIGR02314 ABC_MetN D-methionin 99.9 8.5E-24 1.8E-28 218.5 9.5 205 226-443 27-243 (343)
29 COG1137 YhbG ABC-type (unclass 99.9 1.8E-24 3.9E-29 201.6 3.2 194 226-426 26-228 (243)
30 COG4555 NatA ABC-type Na+ tran 99.9 6.8E-24 1.5E-28 198.0 6.3 206 226-444 24-236 (245)
31 PRK13536 nodulation factor exp 99.9 1.9E-23 4.1E-28 216.0 10.0 188 226-424 63-259 (340)
32 COG1123 ATPase components of v 99.9 3E-23 6.6E-28 221.0 11.5 213 226-449 313-538 (539)
33 TIGR01188 drrA daunorubicin re 99.9 1.7E-23 3.7E-28 213.2 9.3 186 226-422 15-209 (302)
34 PRK11650 ugpC glycerol-3-phosp 99.9 2.6E-23 5.7E-28 216.2 10.4 204 226-443 26-237 (356)
35 COG0411 LivG ABC-type branched 99.9 9.7E-24 2.1E-28 203.0 6.6 194 225-425 25-238 (250)
36 PRK15079 oligopeptide ABC tran 99.9 2.6E-23 5.7E-28 214.2 9.8 213 226-449 43-270 (331)
37 PRK11432 fbpC ferric transport 99.9 3.3E-23 7.2E-28 214.9 10.1 208 226-447 28-243 (351)
38 COG0410 LivF ABC-type branched 99.9 5.8E-23 1.3E-27 196.2 10.1 193 226-427 25-227 (237)
39 TIGR03265 PhnT2 putative 2-ami 99.9 3.7E-23 8.1E-28 214.8 9.5 208 226-447 26-241 (353)
40 PRK09536 btuD corrinoid ABC tr 99.9 4.5E-23 9.8E-28 217.0 10.1 204 226-443 25-238 (402)
41 COG1122 CbiO ABC-type cobalt t 99.9 6.8E-23 1.5E-27 200.6 10.6 187 226-420 26-222 (235)
42 TIGR03258 PhnT 2-aminoethylpho 99.9 4.8E-23 1E-27 214.5 10.2 190 226-425 27-227 (362)
43 PRK10851 sulfate/thiosulfate t 99.9 5.6E-23 1.2E-27 213.5 10.6 210 226-447 24-243 (353)
44 TIGR01186 proV glycine betaine 99.9 4.4E-23 9.5E-28 214.5 9.6 204 226-443 15-232 (363)
45 cd03261 ABC_Org_Solvent_Resist 99.9 5.4E-23 1.2E-27 201.8 9.2 190 226-423 22-223 (235)
46 PRK09452 potA putrescine/sperm 99.9 7E-23 1.5E-27 214.1 10.1 208 226-447 36-251 (375)
47 PRK11308 dppF dipeptide transp 99.9 8.4E-23 1.8E-27 210.2 10.2 213 226-449 37-263 (327)
48 COG4598 HisP ABC-type histidin 99.9 3.9E-23 8.5E-28 189.6 6.8 206 227-444 29-255 (256)
49 TIGR03522 GldA_ABC_ATP gliding 99.9 7.8E-23 1.7E-27 208.3 9.1 187 226-424 24-219 (301)
50 cd03265 ABC_DrrA DrrA is the A 99.9 1.2E-22 2.5E-27 197.5 9.4 186 226-420 22-215 (220)
51 TIGR01288 nodI ATP-binding ABC 99.9 1.3E-22 2.8E-27 206.9 10.0 186 226-422 26-220 (303)
52 TIGR00960 3a0501s02 Type II (G 99.9 1.6E-22 3.5E-27 195.8 9.2 181 226-415 25-216 (216)
53 PRK11607 potG putrescine trans 99.9 1.8E-22 3.9E-27 211.3 10.1 208 226-447 41-256 (377)
54 PRK11153 metN DL-methionine tr 99.9 1.5E-22 3.2E-27 209.8 9.1 190 226-424 27-228 (343)
55 PRK11000 maltose/maltodextrin 99.9 2E-22 4.4E-27 210.6 9.8 189 226-424 25-221 (369)
56 cd03259 ABC_Carb_Solutes_like 99.9 2.9E-22 6.3E-27 193.6 10.1 182 226-417 22-211 (213)
57 cd03296 ABC_CysA_sulfate_impor 99.9 4.6E-22 1E-26 195.8 11.3 190 226-423 24-223 (239)
58 cd03263 ABC_subfamily_A The AB 99.9 3.1E-22 6.7E-27 194.3 9.4 186 226-421 24-216 (220)
59 COG4175 ProV ABC-type proline/ 99.9 1.7E-22 3.7E-27 199.8 7.6 208 224-445 48-269 (386)
60 COG0444 DppD ABC-type dipeptid 99.9 4.4E-22 9.6E-27 199.0 10.6 212 226-447 27-260 (316)
61 PRK11022 dppD dipeptide transp 99.9 5.6E-22 1.2E-26 204.1 11.6 213 226-449 29-262 (326)
62 cd03266 ABC_NatA_sodium_export 99.9 3.5E-22 7.6E-27 193.7 9.5 183 226-417 27-216 (218)
63 cd03219 ABC_Mj1267_LivG_branch 99.9 3.8E-22 8.2E-27 195.8 9.7 189 226-421 22-227 (236)
64 cd03235 ABC_Metallic_Cations A 99.9 5.9E-22 1.3E-26 191.5 10.7 180 226-414 21-209 (213)
65 cd03218 ABC_YhbG The ABC trans 99.9 4.9E-22 1.1E-26 194.5 10.0 188 226-422 22-218 (232)
66 PRK09493 glnQ glutamine ABC tr 99.9 5.1E-22 1.1E-26 195.5 10.1 190 226-423 23-222 (240)
67 cd03293 ABC_NrtD_SsuB_transpor 99.9 5.6E-22 1.2E-26 192.7 10.3 182 226-420 26-217 (220)
68 cd03294 ABC_Pro_Gly_Bertaine T 99.9 7.4E-22 1.6E-26 197.9 10.6 190 225-423 45-247 (269)
69 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 6.5E-22 1.4E-26 191.8 9.7 179 226-414 26-217 (218)
70 cd03260 ABC_PstB_phosphate_tra 99.9 5.5E-22 1.2E-26 193.6 9.3 186 226-421 22-224 (227)
71 TIGR02315 ABC_phnC phosphonate 99.9 7E-22 1.5E-26 194.7 10.0 190 226-422 24-231 (243)
72 cd03256 ABC_PhnC_transporter A 99.9 6.3E-22 1.4E-26 194.7 9.6 190 226-422 23-230 (241)
73 PRK10771 thiQ thiamine transpo 99.9 9.9E-22 2.2E-26 192.6 11.0 189 226-424 21-217 (232)
74 cd03301 ABC_MalK_N The N-termi 99.9 9.9E-22 2.1E-26 189.8 10.7 183 226-418 22-212 (213)
75 PRK10070 glycine betaine trans 99.9 6E-22 1.3E-26 208.4 9.9 206 226-444 50-268 (400)
76 cd03298 ABC_ThiQ_thiamine_tran 99.9 1.1E-21 2.4E-26 189.3 10.9 182 226-417 20-209 (211)
77 PRK09473 oppD oligopeptide tra 99.9 1.1E-21 2.3E-26 202.2 11.5 213 226-449 38-270 (330)
78 TIGR02142 modC_ABC molybdenum 99.9 8.6E-22 1.9E-26 205.0 10.3 187 226-423 19-218 (354)
79 cd03257 ABC_NikE_OppD_transpor 99.9 1E-21 2.2E-26 191.4 10.3 185 226-417 27-226 (228)
80 cd03268 ABC_BcrA_bacitracin_re 99.9 6.5E-22 1.4E-26 190.5 8.7 178 226-417 22-206 (208)
81 cd03258 ABC_MetN_methionine_tr 99.9 6.5E-22 1.4E-26 193.8 8.9 187 226-421 27-225 (233)
82 COG4559 ABC-type hemin transpo 99.9 8.8E-22 1.9E-26 185.2 9.3 203 226-442 23-239 (259)
83 PRK11144 modC molybdate transp 99.9 7.6E-22 1.7E-26 205.2 9.8 186 226-426 20-218 (352)
84 TIGR02673 FtsE cell division A 99.9 9.9E-22 2.1E-26 190.0 9.7 179 226-413 24-213 (214)
85 PRK10261 glutathione transport 99.9 2E-21 4.3E-26 216.3 13.4 214 226-450 346-573 (623)
86 cd03269 ABC_putative_ATPase Th 99.9 1.2E-21 2.6E-26 188.9 10.2 180 226-417 22-208 (210)
87 COG4608 AppF ABC-type oligopep 99.9 9.7E-22 2.1E-26 192.7 9.5 179 226-452 35-221 (268)
88 cd03264 ABC_drug_resistance_li 99.9 9.2E-22 2E-26 189.9 9.2 181 226-417 22-209 (211)
89 cd01856 YlqF YlqF. Proteins o 99.9 3E-20 6.6E-25 173.8 19.2 165 69-286 7-171 (171)
90 PRK11264 putative amino-acid A 99.9 9.1E-22 2E-26 194.8 9.4 190 226-423 25-230 (250)
91 cd03226 ABC_cobalt_CbiO_domain 99.9 7.8E-22 1.7E-26 189.7 8.6 176 226-416 22-205 (205)
92 cd03262 ABC_HisP_GlnQ_permease 99.9 1.2E-21 2.6E-26 189.2 9.8 181 226-414 22-212 (213)
93 PRK13637 cbiO cobalt transport 99.9 7E-22 1.5E-26 200.0 8.5 190 226-424 29-232 (287)
94 TIGR03415 ABC_choXWV_ATP choli 99.9 1E-21 2.2E-26 205.4 9.5 207 225-444 45-268 (382)
95 cd03224 ABC_TM1139_LivF_branch 99.9 1E-21 2.2E-26 190.8 8.9 185 226-420 22-215 (222)
96 cd03292 ABC_FtsE_transporter F 99.9 1.2E-21 2.6E-26 189.3 9.2 180 226-414 23-213 (214)
97 PRK11629 lolD lipoprotein tran 99.9 1.3E-21 2.9E-26 191.8 9.7 183 226-418 31-226 (233)
98 PRK10619 histidine/lysine/argi 99.9 1.3E-21 2.9E-26 194.6 9.8 191 226-423 27-238 (257)
99 TIGR01184 ntrCD nitrate transp 99.9 1.9E-21 4E-26 190.6 10.5 183 226-420 7-198 (230)
100 TIGR03411 urea_trans_UrtD urea 99.9 1.6E-21 3.5E-26 192.1 10.1 189 226-422 24-227 (242)
101 PRK10908 cell division protein 99.9 1.9E-21 4.1E-26 189.2 10.4 183 226-417 24-217 (222)
102 TIGR03771 anch_rpt_ABC anchore 99.9 2.7E-21 5.9E-26 188.6 11.4 199 227-442 3-210 (223)
103 COG4152 ABC-type uncharacteriz 99.9 1.1E-21 2.4E-26 187.9 8.3 188 226-425 24-218 (300)
104 PRK11231 fecE iron-dicitrate t 99.9 1.5E-21 3.3E-26 194.0 9.6 203 226-442 24-236 (255)
105 PRK11831 putative ABC transpor 99.8 1.6E-21 3.4E-26 195.6 9.7 190 226-423 29-230 (269)
106 PRK13647 cbiO cobalt transport 99.8 1.2E-21 2.7E-26 196.9 8.9 188 226-422 27-223 (274)
107 TIGR01277 thiQ thiamine ABC tr 99.8 2.5E-21 5.5E-26 187.3 10.6 184 226-419 20-211 (213)
108 TIGR02211 LolD_lipo_ex lipopro 99.8 1.9E-21 4E-26 189.0 9.7 181 226-416 27-220 (221)
109 PRK13651 cobalt transporter AT 99.8 1E-21 2.2E-26 200.4 8.0 193 226-426 29-254 (305)
110 TIGR00972 3a0107s01c2 phosphat 99.8 1.6E-21 3.5E-26 192.9 9.2 189 226-424 23-230 (247)
111 PRK15093 antimicrobial peptide 99.8 2.6E-21 5.6E-26 199.5 11.1 213 226-448 29-266 (330)
112 TIGR02769 nickel_nikE nickel i 99.8 1.5E-21 3.3E-26 195.2 9.1 206 226-443 33-252 (265)
113 PRK11300 livG leucine/isoleuci 99.8 2.5E-21 5.4E-26 192.2 10.5 191 226-423 27-240 (255)
114 PRK10895 lipopolysaccharide AB 99.8 2.5E-21 5.4E-26 190.8 10.1 189 226-422 25-222 (241)
115 PRK13643 cbiO cobalt transport 99.8 1.4E-21 3E-26 197.9 8.4 191 226-425 28-232 (288)
116 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 3.1E-21 6.8E-26 189.5 10.7 187 226-422 23-217 (236)
117 PRK10575 iron-hydroxamate tran 99.8 2.6E-21 5.7E-26 193.5 10.0 190 226-422 33-233 (265)
118 PRK11124 artP arginine transpo 99.8 2.4E-21 5.1E-26 191.0 9.4 190 226-423 24-227 (242)
119 cd03225 ABC_cobalt_CbiO_domain 99.8 2.5E-21 5.4E-26 186.8 9.2 179 226-413 23-210 (211)
120 PRK13631 cbiO cobalt transport 99.8 1.9E-21 4E-26 199.7 8.7 191 226-425 48-264 (320)
121 PRK14247 phosphate ABC transpo 99.8 1.9E-21 4.1E-26 192.6 8.5 191 226-423 25-231 (250)
122 cd03295 ABC_OpuCA_Osmoprotecti 99.8 2E-21 4.3E-26 191.7 8.6 189 226-422 23-221 (242)
123 PRK11614 livF leucine/isoleuci 99.8 2.9E-21 6.2E-26 189.8 9.7 187 226-422 27-222 (237)
124 PRK14273 phosphate ABC transpo 99.8 1.6E-21 3.4E-26 193.7 7.8 190 226-424 29-236 (254)
125 PRK13548 hmuV hemin importer A 99.8 3.4E-21 7.3E-26 192.0 10.1 188 226-422 24-226 (258)
126 PRK11248 tauB taurine transpor 99.8 4.5E-21 9.7E-26 190.9 10.9 184 226-422 23-216 (255)
127 PRK13641 cbiO cobalt transport 99.8 2E-21 4.2E-26 196.7 8.4 188 226-422 29-230 (287)
128 PRK13634 cbiO cobalt transport 99.8 1.8E-21 4E-26 197.2 7.5 189 226-423 29-232 (290)
129 TIGR03005 ectoine_ehuA ectoine 99.8 4E-21 8.6E-26 190.6 9.7 191 226-424 22-234 (252)
130 PRK10584 putative ABC transpor 99.8 4.6E-21 9.9E-26 187.2 10.0 182 226-417 32-226 (228)
131 PRK10253 iron-enterobactin tra 99.8 4.2E-21 9.1E-26 192.0 9.8 189 226-421 29-228 (265)
132 PRK13650 cbiO cobalt transport 99.8 2.6E-21 5.7E-26 195.0 8.4 188 226-423 29-226 (279)
133 PRK11247 ssuB aliphatic sulfon 99.8 6.8E-21 1.5E-25 189.8 11.1 177 226-421 34-218 (257)
134 PRK13644 cbiO cobalt transport 99.8 3.5E-21 7.5E-26 193.6 9.0 188 226-423 24-221 (274)
135 cd03267 ABC_NatA_like Similar 99.8 6.5E-21 1.4E-25 187.4 10.7 183 226-417 43-234 (236)
136 COG4161 ArtP ABC-type arginine 99.8 3.5E-21 7.7E-26 173.9 8.0 190 227-424 25-228 (242)
137 COG4604 CeuD ABC-type enteroch 99.8 7.4E-22 1.6E-26 183.8 3.6 203 226-442 23-234 (252)
138 PRK13635 cbiO cobalt transport 99.8 3.8E-21 8.2E-26 193.9 9.1 188 226-423 29-226 (279)
139 PRK14267 phosphate ABC transpo 99.8 4.3E-21 9.3E-26 190.4 9.1 190 226-423 26-234 (253)
140 PRK13646 cbiO cobalt transport 99.8 3E-21 6.5E-26 195.2 8.1 189 226-423 29-232 (286)
141 cd01859 MJ1464 MJ1464. This f 99.8 1E-19 2.3E-24 167.2 17.6 155 71-285 1-156 (156)
142 cd01849 YlqF_related_GTPase Yl 99.8 1.1E-19 2.4E-24 167.2 17.7 153 83-285 1-155 (155)
143 COG4148 ModC ABC-type molybdat 99.8 3.1E-21 6.8E-26 188.0 7.6 186 228-428 22-220 (352)
144 cd03297 ABC_ModC_molybdenum_tr 99.8 7.1E-21 1.5E-25 184.2 9.9 180 226-417 20-212 (214)
145 PRK03695 vitamin B12-transport 99.8 8.1E-21 1.7E-25 188.2 10.3 187 226-422 18-218 (248)
146 COG4172 ABC-type uncharacteriz 99.8 5.3E-21 1.1E-25 194.3 9.1 207 226-442 309-528 (534)
147 cd03234 ABCG_White The White s 99.8 1.3E-20 2.9E-25 183.9 11.5 184 226-418 29-225 (226)
148 PRK14256 phosphate ABC transpo 99.8 8.3E-21 1.8E-25 188.3 10.2 205 226-442 26-248 (252)
149 PRK14239 phosphate transporter 99.8 1.6E-20 3.4E-25 186.2 11.9 205 226-443 27-249 (252)
150 PRK09984 phosphonate/organopho 99.8 8E-21 1.7E-25 189.6 9.9 203 226-444 26-252 (262)
151 TIGR03873 F420-0_ABC_ATP propo 99.8 9.2E-21 2E-25 188.5 10.0 190 226-422 23-222 (256)
152 PRK14268 phosphate ABC transpo 99.8 1.6E-20 3.4E-25 187.1 11.5 190 226-424 34-240 (258)
153 PRK13639 cbiO cobalt transport 99.8 5.1E-21 1.1E-25 192.5 8.1 188 226-423 24-223 (275)
154 PRK13638 cbiO cobalt transport 99.8 6.6E-21 1.4E-25 191.2 8.8 188 226-422 23-221 (271)
155 COG1123 ATPase components of v 99.8 7.8E-21 1.7E-25 202.7 9.6 213 226-449 31-263 (539)
156 PRK15056 manganese/iron transp 99.8 1.2E-20 2.6E-25 189.5 10.4 189 226-422 29-226 (272)
157 PRK13649 cbiO cobalt transport 99.8 6.7E-21 1.4E-25 192.0 8.6 188 226-422 29-230 (280)
158 TIGR01978 sufC FeS assembly AT 99.8 1.1E-20 2.5E-25 186.0 10.0 191 226-422 22-230 (243)
159 PRK13636 cbiO cobalt transport 99.8 6.4E-21 1.4E-25 192.6 8.4 189 226-423 28-228 (283)
160 PRK13652 cbiO cobalt transport 99.8 9.6E-21 2.1E-25 190.7 9.4 188 226-423 26-224 (277)
161 TIGR03410 urea_trans_UrtE urea 99.8 8E-21 1.7E-25 185.7 8.6 186 226-422 22-217 (230)
162 PRK10762 D-ribose transporter 99.8 9.2E-21 2E-25 206.0 9.9 189 226-421 26-225 (501)
163 COG4181 Predicted ABC-type tra 99.8 9.2E-21 2E-25 172.9 8.1 181 226-416 32-225 (228)
164 PRK13549 xylose transporter AT 99.8 1E-20 2.2E-25 205.9 9.9 190 226-422 27-228 (506)
165 PRK10744 pstB phosphate transp 99.8 2.4E-20 5.1E-25 186.0 11.6 190 226-424 35-242 (260)
166 PRK13648 cbiO cobalt transport 99.8 1.2E-20 2.6E-25 189.2 9.4 187 226-422 31-227 (269)
167 PRK14240 phosphate transporter 99.8 2.7E-20 5.7E-25 184.4 11.7 189 226-423 25-231 (250)
168 TIGR02770 nickel_nikD nickel i 99.8 1.2E-20 2.7E-25 184.6 9.2 190 226-424 8-213 (230)
169 PRK14242 phosphate transporter 99.8 2.7E-20 5.9E-25 184.6 11.7 189 226-423 28-234 (253)
170 TIGR03740 galliderm_ABC gallid 99.8 1.2E-20 2.5E-25 183.9 8.8 180 226-421 22-208 (223)
171 cd03300 ABC_PotA_N PotA is an 99.8 1.7E-20 3.6E-25 184.0 9.8 187 226-422 22-216 (232)
172 PRK15134 microcin C ABC transp 99.8 1.3E-20 2.7E-25 206.3 9.9 193 226-424 308-513 (529)
173 PRK14259 phosphate ABC transpo 99.8 2.5E-20 5.4E-25 186.9 11.2 191 226-425 35-252 (269)
174 PRK11701 phnK phosphonate C-P 99.8 1.7E-20 3.7E-25 186.8 9.9 192 226-424 28-239 (258)
175 PRK13642 cbiO cobalt transport 99.8 1.2E-20 2.7E-25 189.9 8.9 189 226-424 29-227 (277)
176 PRK13633 cobalt transporter AT 99.8 1.5E-20 3.2E-25 189.6 9.5 187 226-423 32-230 (280)
177 PRK15112 antimicrobial peptide 99.8 1.8E-20 3.9E-25 187.7 9.9 190 226-422 35-235 (267)
178 cd03299 ABC_ModC_like Archeal 99.8 1.9E-20 4E-25 184.1 9.8 187 226-422 21-215 (235)
179 TIGR03608 L_ocin_972_ABC putat 99.8 1.7E-20 3.8E-25 180.1 9.4 170 226-404 20-201 (206)
180 PRK14235 phosphate transporter 99.8 9.9E-21 2.1E-25 189.6 7.9 192 225-424 40-249 (267)
181 PRK14270 phosphate ABC transpo 99.8 3.3E-20 7.2E-25 183.9 11.6 191 226-425 26-234 (251)
182 PRK13632 cbiO cobalt transport 99.8 1.6E-20 3.4E-25 188.5 9.4 186 226-421 31-226 (271)
183 PRK10982 galactose/methyl gala 99.8 1.6E-20 3.5E-25 203.6 10.1 189 226-421 20-218 (491)
184 PRK13640 cbiO cobalt transport 99.8 1.3E-20 2.9E-25 190.2 8.8 188 226-423 29-229 (282)
185 PRK09700 D-allose transporter 99.8 1.5E-20 3.2E-25 204.8 9.8 190 226-422 27-230 (510)
186 PRK14248 phosphate ABC transpo 99.8 3.5E-20 7.5E-25 185.7 11.6 191 226-425 43-251 (268)
187 TIGR02323 CP_lyasePhnK phospho 99.8 1.6E-20 3.4E-25 186.4 9.0 194 226-424 25-236 (253)
188 PRK14241 phosphate transporter 99.8 2E-20 4.4E-25 186.3 9.8 190 226-424 26-240 (258)
189 PRK14272 phosphate ABC transpo 99.8 2.3E-20 5.1E-25 184.9 10.1 191 226-424 26-234 (252)
190 PRK14253 phosphate ABC transpo 99.8 2.3E-20 5E-25 184.8 9.9 190 226-424 25-231 (249)
191 PRK14274 phosphate ABC transpo 99.8 3.6E-20 7.9E-25 184.5 11.2 190 226-424 34-241 (259)
192 PRK14250 phosphate ABC transpo 99.8 1.8E-20 3.8E-25 184.9 8.8 184 226-422 25-217 (241)
193 PRK10419 nikE nickel transport 99.8 4.2E-20 9.1E-25 185.2 11.4 208 226-445 34-255 (268)
194 PRK13538 cytochrome c biogenes 99.8 3.2E-20 6.9E-25 178.5 9.9 170 226-407 23-199 (204)
195 PRK14271 phosphate ABC transpo 99.8 2.6E-20 5.6E-25 187.5 9.6 190 226-424 43-249 (276)
196 PRK14255 phosphate ABC transpo 99.8 3.2E-20 7E-25 184.0 10.1 192 226-426 27-236 (252)
197 PRK13645 cbiO cobalt transport 99.8 1.7E-20 3.8E-25 189.9 8.2 188 226-422 33-236 (289)
198 PRK15439 autoinducer 2 ABC tra 99.8 2.4E-20 5.1E-25 203.2 9.8 184 226-422 33-225 (510)
199 TIGR01166 cbiO cobalt transpor 99.8 5.6E-20 1.2E-24 174.7 11.0 163 226-398 14-188 (190)
200 PRK14269 phosphate ABC transpo 99.8 2.8E-20 6.2E-25 183.9 9.3 191 226-424 24-228 (246)
201 PRK14265 phosphate ABC transpo 99.8 3.6E-20 7.7E-25 186.3 10.0 192 226-426 42-258 (274)
202 PRK14245 phosphate ABC transpo 99.8 5.4E-20 1.2E-24 182.3 11.1 191 226-425 25-233 (250)
203 PRK14243 phosphate transporter 99.8 3.5E-20 7.6E-25 185.3 9.8 192 226-426 32-248 (264)
204 cd03231 ABC_CcmA_heme_exporter 99.8 5.9E-20 1.3E-24 176.3 10.9 167 226-407 22-195 (201)
205 TIGR00968 3a0106s01 sulfate AB 99.8 4.5E-20 9.7E-25 181.6 10.1 189 226-424 22-218 (237)
206 PRK14249 phosphate ABC transpo 99.8 8.8E-20 1.9E-24 180.9 12.2 204 226-442 26-247 (251)
207 PRK13547 hmuV hemin importer A 99.8 3.4E-20 7.4E-25 186.3 9.2 190 226-422 23-240 (272)
208 cd03233 ABC_PDR_domain1 The pl 99.8 5.5E-20 1.2E-24 176.7 10.2 161 226-418 29-201 (202)
209 PRK14275 phosphate ABC transpo 99.8 4.2E-20 9.2E-25 186.9 9.7 190 226-424 61-268 (286)
210 PRK14244 phosphate ABC transpo 99.8 4.6E-20 9.9E-25 182.9 9.7 190 226-423 27-234 (251)
211 TIGR02633 xylG D-xylose ABC tr 99.8 4.3E-20 9.2E-25 200.7 10.3 191 226-422 23-226 (500)
212 TIGR01187 potA spermidine/putr 99.8 2.6E-20 5.6E-25 191.7 8.1 180 235-424 1-188 (325)
213 PRK14251 phosphate ABC transpo 99.8 4.6E-20 9.9E-25 182.8 9.5 188 226-424 26-233 (251)
214 PRK09544 znuC high-affinity zi 99.8 4.3E-20 9.3E-25 183.4 9.3 185 226-442 26-218 (251)
215 CHL00131 ycf16 sulfate ABC tra 99.8 7.3E-20 1.6E-24 181.4 10.8 191 226-422 29-237 (252)
216 PRK14263 phosphate ABC transpo 99.8 5.8E-20 1.3E-24 183.5 10.0 191 225-424 29-243 (261)
217 PRK14261 phosphate ABC transpo 99.8 4.8E-20 1E-24 183.0 9.3 191 226-425 28-236 (253)
218 PRK14260 phosphate ABC transpo 99.8 9.8E-20 2.1E-24 181.5 11.4 190 226-424 29-241 (259)
219 PRK09700 D-allose transporter 99.8 5.1E-20 1.1E-24 200.6 10.0 188 225-419 284-491 (510)
220 PRK11288 araG L-arabinose tran 99.8 5.5E-20 1.2E-24 200.0 10.1 187 226-419 26-222 (501)
221 PRK14254 phosphate ABC transpo 99.8 1.1E-19 2.5E-24 183.7 11.8 188 226-422 61-265 (285)
222 PRK14237 phosphate transporter 99.8 9E-20 1.9E-24 182.7 10.5 191 226-425 42-250 (267)
223 PRK14238 phosphate transporter 99.8 6.8E-20 1.5E-24 184.0 9.6 188 226-423 46-252 (271)
224 PRK13540 cytochrome c biogenes 99.8 1.3E-19 2.8E-24 173.8 10.9 166 226-405 23-195 (200)
225 PRK10762 D-ribose transporter 99.8 5.4E-20 1.2E-24 200.0 9.4 191 225-421 273-479 (501)
226 PRK14262 phosphate ABC transpo 99.8 1.2E-19 2.6E-24 179.7 11.0 188 226-422 25-230 (250)
227 PRK13549 xylose transporter AT 99.8 6E-20 1.3E-24 199.9 9.6 191 225-421 283-489 (506)
228 PRK14257 phosphate ABC transpo 99.8 1.6E-19 3.6E-24 185.9 12.3 192 226-427 104-314 (329)
229 TIGR01257 rim_protein retinal- 99.8 5.2E-20 1.1E-24 222.0 9.6 186 226-422 1961-2155(2272)
230 TIGR02982 heterocyst_DevA ABC 99.8 8.6E-20 1.9E-24 177.4 9.1 181 226-415 27-219 (220)
231 PRK10261 glutathione transport 99.8 6.4E-20 1.4E-24 204.2 9.3 192 226-424 38-256 (623)
232 PRK11288 araG L-arabinose tran 99.8 5.3E-20 1.1E-24 200.1 8.4 190 226-421 275-480 (501)
233 PRK13543 cytochrome c biogenes 99.8 1.5E-19 3.3E-24 175.1 10.5 170 226-409 33-209 (214)
234 cd03245 ABCC_bacteriocin_expor 99.8 7.7E-20 1.7E-24 177.5 8.5 174 226-417 26-218 (220)
235 PRK10418 nikD nickel transport 99.8 1.8E-19 3.9E-24 179.1 11.3 188 226-424 25-228 (254)
236 COG4525 TauB ABC-type taurine 99.8 1.1E-19 2.3E-24 169.2 8.5 175 226-413 27-209 (259)
237 PRK14246 phosphate ABC transpo 99.8 9.2E-20 2E-24 181.7 8.7 192 226-425 32-240 (257)
238 cd03251 ABCC_MsbA MsbA is an e 99.8 9.4E-20 2E-24 178.5 8.5 184 226-420 24-219 (234)
239 TIGR02633 xylG D-xylose ABC tr 99.8 7.8E-20 1.7E-24 198.7 8.6 188 226-419 282-485 (500)
240 TIGR02324 CP_lyasePhnL phospho 99.8 1.8E-19 3.9E-24 175.5 10.3 172 226-405 30-218 (224)
241 PRK14236 phosphate transporter 99.8 2.6E-19 5.7E-24 179.8 11.7 188 226-422 47-252 (272)
242 cd03252 ABCC_Hemolysin The ABC 99.8 1E-19 2.2E-24 178.7 8.5 185 226-421 24-220 (237)
243 PRK10247 putative ABC transpor 99.8 1.2E-19 2.6E-24 177.1 8.9 182 226-418 29-220 (225)
244 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.8 1.4E-19 3E-24 176.7 9.3 174 225-418 43-223 (224)
245 PRK14252 phosphate ABC transpo 99.8 2.4E-19 5.2E-24 179.3 11.1 204 226-442 38-261 (265)
246 cd03230 ABC_DR_subfamily_A Thi 99.8 2.1E-19 4.5E-24 168.4 10.0 144 226-414 22-172 (173)
247 TIGR01257 rim_protein retinal- 99.8 1E-19 2.2E-24 219.6 9.5 186 226-421 952-1144(2272)
248 PRK13546 teichoic acids export 99.8 2.2E-19 4.7E-24 179.7 10.4 176 226-422 46-228 (264)
249 cd03237 ABC_RNaseL_inhibitor_d 99.8 2.4E-19 5.1E-24 177.6 10.4 167 226-416 21-195 (246)
250 PRK13545 tagH teichoic acids e 99.8 1.8E-19 3.8E-24 193.0 10.1 175 226-421 46-227 (549)
251 PRK14264 phosphate ABC transpo 99.8 3E-19 6.6E-24 182.3 11.4 189 226-423 67-286 (305)
252 PRK14266 phosphate ABC transpo 99.8 3.6E-19 7.8E-24 176.3 11.4 190 226-424 25-232 (250)
253 cd03248 ABCC_TAP TAP, the Tran 99.8 1.5E-19 3.2E-24 176.3 8.5 178 226-414 36-225 (226)
254 PRK09580 sufC cysteine desulfu 99.8 2.9E-19 6.3E-24 176.6 10.4 193 226-422 23-231 (248)
255 PRK15439 autoinducer 2 ABC tra 99.8 2E-19 4.4E-24 195.9 10.0 187 226-421 285-487 (510)
256 PRK15134 microcin C ABC transp 99.8 3.1E-19 6.6E-24 195.4 11.4 190 226-422 31-242 (529)
257 PRK14258 phosphate ABC transpo 99.8 3.9E-19 8.5E-24 177.4 11.2 191 226-424 29-243 (261)
258 COG1129 MglA ABC-type sugar tr 99.8 1.8E-19 3.9E-24 191.1 9.2 189 226-421 30-229 (500)
259 TIGR03269 met_CoM_red_A2 methy 99.8 1.7E-19 3.7E-24 197.0 9.1 186 226-420 22-252 (520)
260 TIGR01189 ccmA heme ABC export 99.8 4.4E-19 9.4E-24 169.7 10.7 158 226-396 22-186 (198)
261 PRK12289 GTPase RsgA; Reviewed 99.8 1.6E-18 3.5E-23 179.4 15.6 161 60-290 71-239 (352)
262 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 1.9E-19 4.1E-24 177.0 8.2 180 226-420 25-220 (238)
263 PRK13539 cytochrome c biogenes 99.8 4.6E-19 1E-23 170.8 10.4 162 226-402 24-192 (207)
264 cd03254 ABCC_Glucan_exporter_l 99.8 2.6E-19 5.6E-24 174.9 8.7 180 226-420 25-220 (229)
265 cd01855 YqeH YqeH. YqeH is an 99.8 2.4E-18 5.2E-23 163.4 15.0 160 61-285 14-190 (190)
266 cd03215 ABC_Carb_Monos_II This 99.8 4.2E-19 9E-24 167.7 8.9 148 226-414 22-181 (182)
267 PRK10938 putative molybdenum t 99.8 2.7E-19 5.8E-24 194.0 8.6 190 226-420 282-486 (490)
268 cd03213 ABCG_EPDR ABCG transpo 99.8 5.5E-19 1.2E-23 168.7 9.7 152 226-417 31-192 (194)
269 cd03253 ABCC_ATM1_transporter 99.8 4.2E-19 9.2E-24 174.1 9.0 181 226-421 23-219 (236)
270 TIGR03269 met_CoM_red_A2 methy 99.8 3.4E-19 7.4E-24 194.6 9.1 186 226-420 306-511 (520)
271 cd03229 ABC_Class3 This class 99.8 4.7E-19 1E-23 166.8 8.5 145 226-413 22-177 (178)
272 COG3845 ABC-type uncharacteriz 99.8 4.9E-19 1.1E-23 184.7 9.1 187 226-419 26-222 (501)
273 cd03244 ABCC_MRP_domain2 Domai 99.8 8.5E-19 1.8E-23 170.3 9.9 176 226-419 26-219 (221)
274 PRK10938 putative molybdenum t 99.8 4.1E-19 8.9E-24 192.6 8.2 182 226-422 25-220 (490)
275 cd03289 ABCC_CFTR2 The CFTR su 99.8 5.3E-19 1.2E-23 177.8 8.2 195 226-445 26-238 (275)
276 KOG2485 Conserved ATP/GTP bind 99.8 7.1E-18 1.5E-22 167.0 15.9 212 62-327 26-249 (335)
277 cd03247 ABCC_cytochrome_bd The 99.8 5.9E-19 1.3E-23 166.1 7.6 146 226-417 24-176 (178)
278 cd03214 ABC_Iron-Siderophores_ 99.8 2.1E-19 4.6E-24 169.4 4.2 149 226-417 21-178 (180)
279 PLN03211 ABC transporter G-25; 99.8 1.7E-18 3.8E-23 193.3 12.2 186 226-421 90-291 (659)
280 cd03232 ABC_PDR_domain2 The pl 99.8 1.1E-18 2.5E-23 166.2 9.2 152 226-418 29-191 (192)
281 PRK13541 cytochrome c biogenes 99.8 2.2E-18 4.7E-23 164.6 11.1 160 226-402 22-188 (195)
282 PRK10982 galactose/methyl gala 99.8 6.3E-19 1.4E-23 191.2 8.3 189 226-419 270-473 (491)
283 cd03217 ABC_FeS_Assembly ABC-t 99.8 1.1E-18 2.5E-23 167.3 8.9 158 226-423 22-191 (200)
284 COG4586 ABC-type uncharacteriz 99.8 4E-19 8.6E-24 173.0 5.2 188 225-421 45-241 (325)
285 cd03246 ABCC_Protease_Secretio 99.8 1.5E-18 3.3E-23 162.6 8.3 141 226-414 24-172 (173)
286 PRK13409 putative ATPase RIL; 99.8 1.8E-18 4E-23 190.8 10.3 165 226-417 361-533 (590)
287 cd03288 ABCC_SUR2 The SUR doma 99.8 1.4E-18 3.1E-23 173.0 8.5 186 226-423 43-240 (257)
288 COG4172 ABC-type uncharacteriz 99.8 1.9E-18 4.2E-23 175.7 9.5 213 226-447 32-264 (534)
289 cd03216 ABC_Carb_Monos_I This 99.8 1.5E-18 3.3E-23 161.2 7.5 131 226-416 22-161 (163)
290 cd03250 ABCC_MRP_domain1 Domai 99.7 3.3E-18 7.2E-23 164.3 10.0 161 226-413 27-203 (204)
291 cd03369 ABCC_NFT1 Domain 2 of 99.7 4.5E-18 9.7E-23 163.8 10.4 168 226-419 30-205 (207)
292 KOG0059 Lipid exporter ABCA1 a 99.7 2.4E-18 5.3E-23 197.9 9.5 190 226-424 587-785 (885)
293 cd03290 ABCC_SUR1_N The SUR do 99.7 1.2E-17 2.6E-22 162.1 12.5 174 226-413 23-217 (218)
294 COG2274 SunT ABC-type bacterio 99.7 1.6E-18 3.6E-23 193.2 7.3 190 225-425 494-695 (709)
295 PRK11174 cysteine/glutathione 99.7 3.5E-18 7.6E-23 189.2 9.6 182 226-422 372-568 (588)
296 COG4167 SapF ABC-type antimicr 99.7 4.8E-18 1E-22 156.6 8.6 215 226-447 35-260 (267)
297 cd03228 ABCC_MRP_Like The MRP 99.7 3.9E-18 8.4E-23 159.5 8.1 139 226-413 24-170 (171)
298 PRK15177 Vi polysaccharide exp 99.7 6.5E-18 1.4E-22 163.8 9.7 169 226-421 9-187 (213)
299 TIGR00157 ribosome small subun 99.7 2.8E-17 6.2E-22 162.6 14.4 162 59-291 17-187 (245)
300 cd03223 ABCD_peroxisomal_ALDP 99.7 1.2E-17 2.5E-22 155.7 10.7 135 226-413 23-164 (166)
301 PRK15064 ABC transporter ATP-b 99.7 6.8E-18 1.5E-22 184.8 10.6 172 226-416 23-231 (530)
302 PRK10535 macrolide transporter 99.7 9.7E-18 2.1E-22 187.5 11.7 189 226-424 30-230 (648)
303 TIGR00955 3a01204 The Eye Pigm 99.7 8.7E-18 1.9E-22 187.0 11.2 188 226-422 47-252 (617)
304 COG4988 CydD ABC-type transpor 99.7 5.1E-18 1.1E-22 180.7 8.2 189 225-424 342-541 (559)
305 PRK11176 lipid transporter ATP 99.7 8.8E-18 1.9E-22 185.8 10.1 184 226-423 365-564 (582)
306 KOG0055 Multidrug/pheromone ex 99.7 3.5E-18 7.5E-23 194.8 6.6 185 226-422 375-572 (1228)
307 COG1132 MdlB ABC-type multidru 99.7 6.7E-18 1.4E-22 186.3 8.3 187 226-423 351-549 (567)
308 cd01854 YjeQ_engC YjeQ/EngC. 99.7 6.6E-17 1.4E-21 163.7 14.8 164 59-289 51-227 (287)
309 cd03236 ABC_RNaseL_inhibitor_d 99.7 1.2E-17 2.6E-22 166.3 9.1 172 227-413 23-215 (255)
310 COG4619 ABC-type uncharacteriz 99.7 1.9E-18 4E-23 157.4 3.0 172 226-408 25-205 (223)
311 TIGR03797 NHPM_micro_ABC2 NHPM 99.7 6.4E-18 1.4E-22 190.4 8.0 180 226-423 475-670 (686)
312 PRK11160 cysteine/glutathione 99.7 7.6E-18 1.7E-22 186.1 8.2 182 226-422 362-558 (574)
313 PRK15064 ABC transporter ATP-b 99.7 1.9E-17 4.2E-22 181.2 10.8 166 225-416 340-514 (530)
314 PRK13796 GTPase YqeH; Provisio 99.7 1.7E-16 3.8E-21 165.7 17.2 153 70-288 58-223 (365)
315 PRK00098 GTPase RsgA; Reviewed 99.7 5.4E-17 1.2E-21 165.2 13.1 157 64-287 59-228 (298)
316 COG1119 ModF ABC-type molybden 99.7 4.9E-18 1.1E-22 163.8 5.0 188 225-418 52-254 (257)
317 PRK10790 putative multidrug tr 99.7 1.2E-17 2.7E-22 185.1 8.8 182 226-423 363-560 (592)
318 PRK11819 putative ABC transpor 99.7 1.9E-17 4E-22 182.3 9.9 168 226-416 346-522 (556)
319 cd03238 ABC_UvrA The excision 99.7 1.5E-17 3.2E-22 156.5 7.5 141 226-413 17-164 (176)
320 TIGR01842 type_I_sec_PrtD type 99.7 2E-17 4.4E-22 181.6 9.7 186 225-420 339-536 (544)
321 PRK11819 putative ABC transpor 99.7 2.4E-17 5.2E-22 181.4 10.3 170 226-416 29-239 (556)
322 TIGR03375 type_I_sec_LssB type 99.7 1E-17 2.2E-22 189.1 7.5 180 226-420 487-682 (694)
323 TIGR03796 NHPM_micro_ABC1 NHPM 99.7 8.9E-18 1.9E-22 190.0 7.0 180 226-422 501-696 (710)
324 KOG0058 Peptide exporter, ABC 99.7 1.8E-17 3.9E-22 179.8 9.0 183 225-421 489-686 (716)
325 TIGR03597 GTPase_YqeH ribosome 99.7 1.9E-16 4.2E-21 165.1 16.4 159 64-288 45-217 (360)
326 cd03291 ABCC_CFTR1 The CFTR su 99.7 5.2E-17 1.1E-21 163.9 11.7 168 226-423 59-244 (282)
327 PRK11147 ABC transporter ATPas 99.7 2.4E-17 5.2E-22 184.1 9.8 170 226-418 341-519 (635)
328 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 2.7E-17 5.9E-22 180.9 10.0 169 226-417 344-521 (552)
329 TIGR00956 3a01205 Pleiotropic 99.7 5.1E-17 1.1E-21 194.6 12.8 186 226-422 785-989 (1394)
330 PLN03140 ABC transporter G fam 99.7 5E-17 1.1E-21 194.5 11.8 187 226-422 902-1106(1470)
331 PRK10789 putative multidrug tr 99.7 5.8E-17 1.3E-21 178.9 11.0 182 226-422 337-534 (569)
332 cd03222 ABC_RNaseL_inhibitor T 99.7 3.7E-17 8.1E-22 153.9 8.0 122 226-415 21-150 (177)
333 TIGR02203 MsbA_lipidA lipid A 99.7 1.8E-17 3.9E-22 182.8 6.8 185 226-424 354-554 (571)
334 TIGR02868 CydC thiol reductant 99.7 3.8E-17 8.2E-22 178.8 8.9 153 226-391 357-524 (529)
335 PRK10636 putative ABC transpor 99.7 5.3E-17 1.2E-21 181.2 10.2 164 226-416 334-506 (638)
336 TIGR01193 bacteriocin_ABC ABC- 99.7 3.4E-17 7.4E-22 185.2 8.6 182 226-422 496-693 (708)
337 PRK13657 cyclic beta-1,2-gluca 99.7 5.2E-17 1.1E-21 180.0 9.5 182 226-422 357-554 (588)
338 PRK13409 putative ATPase RIL; 99.7 3.2E-17 6.9E-22 181.1 7.3 171 226-413 95-287 (590)
339 TIGR00956 3a01205 Pleiotropic 99.7 7.7E-17 1.7E-21 193.0 11.0 189 226-422 83-296 (1394)
340 TIGR02204 MsbA_rel ABC transpo 99.7 5.4E-17 1.2E-21 179.3 8.9 182 226-422 362-559 (576)
341 TIGR01846 type_I_sec_HlyB type 99.7 3.5E-17 7.6E-22 184.7 7.5 182 226-422 479-676 (694)
342 TIGR01192 chvA glucan exporter 99.7 7.4E-17 1.6E-21 178.6 9.5 185 226-421 357-553 (585)
343 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 1E-16 2.2E-21 176.4 10.3 170 226-416 27-237 (552)
344 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 8.5E-17 1.8E-21 146.5 7.7 115 226-413 22-143 (144)
345 COG0396 sufC Cysteine desulfur 99.7 1.7E-16 3.8E-21 151.6 9.9 198 226-428 26-236 (251)
346 TIGR00958 3a01208 Conjugate Tr 99.7 1.1E-16 2.4E-21 181.0 9.7 179 226-421 503-697 (711)
347 KOG0057 Mitochondrial Fe/S clu 99.7 1.2E-16 2.6E-21 168.4 9.0 183 225-421 373-569 (591)
348 COG1160 Predicted GTPases [Gen 99.7 3.7E-16 8E-21 162.6 12.5 184 47-287 48-238 (444)
349 COG4136 ABC-type uncharacteriz 99.7 2.5E-16 5.4E-21 141.1 9.3 167 225-402 23-200 (213)
350 PRK12288 GTPase RsgA; Reviewed 99.7 1.2E-15 2.7E-20 157.8 15.6 146 77-290 116-272 (347)
351 PRK10636 putative ABC transpor 99.7 1.5E-16 3.2E-21 177.7 9.2 172 226-417 23-226 (638)
352 TIGR02857 CydD thiol reductant 99.7 1.3E-16 2.8E-21 174.6 8.0 166 226-405 344-525 (529)
353 PLN03073 ABC transporter F fam 99.6 3.5E-16 7.7E-21 176.0 10.9 165 226-416 531-703 (718)
354 COG4107 PhnK ABC-type phosphon 99.6 2.9E-16 6.3E-21 143.8 7.6 194 226-429 28-244 (258)
355 PRK10522 multidrug transporter 99.6 2E-16 4.4E-21 173.9 7.7 180 226-425 345-537 (547)
356 TIGR00954 3a01203 Peroxysomal 99.6 4.3E-16 9.3E-21 174.6 10.1 160 226-409 474-651 (659)
357 KOG0061 Transporter, ABC super 99.6 9.4E-16 2E-20 169.9 12.5 188 226-422 52-256 (613)
358 cd00267 ABC_ATPase ABC (ATP-bi 99.6 3.6E-16 7.9E-21 144.0 7.3 126 226-411 21-154 (157)
359 COG1101 PhnK ABC-type uncharac 99.6 5E-16 1.1E-20 146.9 8.0 194 226-426 28-238 (263)
360 COG4987 CydC ABC-type transpor 99.6 2.3E-16 5E-21 166.1 5.8 186 225-426 359-562 (573)
361 PTZ00265 multidrug resistance 99.6 2.5E-16 5.5E-21 189.0 6.1 182 226-420 1190-1446(1466)
362 PRK11147 ABC transporter ATPas 99.6 1.1E-15 2.5E-20 170.7 10.0 171 226-418 25-234 (635)
363 TIGR01194 cyc_pep_trnsptr cycl 99.6 4.7E-16 1E-20 171.2 6.8 174 226-418 364-551 (555)
364 PLN03232 ABC transporter C fam 99.6 4.9E-16 1.1E-20 187.7 7.6 181 226-422 1258-1454(1495)
365 COG4674 Uncharacterized ABC-ty 99.6 1.9E-16 4.2E-21 147.6 2.7 196 226-427 27-236 (249)
366 PLN03130 ABC transporter C fam 99.6 8.1E-16 1.8E-20 186.3 8.6 182 226-423 1261-1458(1622)
367 cd03270 ABC_UvrA_I The excisio 99.6 1.4E-15 3.1E-20 148.7 8.6 93 321-418 120-225 (226)
368 PTZ00265 multidrug resistance 99.6 1.2E-15 2.5E-20 183.4 9.3 176 226-411 407-654 (1466)
369 TIGR01271 CFTR_protein cystic 99.6 1.2E-15 2.6E-20 184.1 9.5 181 226-422 1241-1436(1490)
370 PLN03140 ABC transporter G fam 99.6 2.2E-15 4.8E-20 180.4 11.6 188 226-422 187-423 (1470)
371 TIGR00957 MRP_assoc_pro multi 99.6 1E-15 2.3E-20 185.1 8.1 181 226-422 1308-1504(1522)
372 KOG0055 Multidrug/pheromone ex 99.6 1.7E-15 3.7E-20 173.0 9.1 182 226-422 1012-1209(1228)
373 TIGR01271 CFTR_protein cystic 99.6 4.3E-15 9.3E-20 179.4 11.6 172 226-420 448-630 (1490)
374 PTZ00243 ABC transporter; Prov 99.6 2.9E-15 6.3E-20 181.1 9.9 183 226-424 1332-1531(1560)
375 COG4618 ArpD ABC-type protease 99.6 3.4E-15 7.3E-20 156.2 7.8 187 225-424 357-558 (580)
376 COG0488 Uup ATPase components 99.6 7.2E-15 1.6E-19 159.3 10.0 173 226-419 25-232 (530)
377 COG1134 TagH ABC-type polysacc 99.6 6.7E-15 1.4E-19 142.3 8.3 179 225-424 48-234 (249)
378 PF00005 ABC_tran: ABC transpo 99.6 3.2E-15 6.9E-20 133.9 5.7 124 226-367 7-137 (137)
379 PRK01889 GTPase RsgA; Reviewed 99.5 4.4E-14 9.5E-19 147.2 12.9 145 78-290 109-262 (356)
380 KOG0065 Pleiotropic drug resis 99.5 5.9E-15 1.3E-19 168.7 6.6 210 226-443 813-1051(1391)
381 TIGR00957 MRP_assoc_pro multi 99.5 2.3E-14 5E-19 173.5 10.8 168 226-421 660-845 (1522)
382 COG1162 Predicted GTPases [Gen 99.5 6.2E-14 1.3E-18 140.2 11.7 161 60-290 61-231 (301)
383 cd03278 ABC_SMC_barmotin Barmo 99.5 1.8E-14 3.8E-19 138.2 6.1 155 226-414 19-193 (197)
384 PLN03073 ABC transporter F fam 99.5 7.3E-15 1.6E-19 165.4 3.9 92 319-417 325-421 (718)
385 COG4133 CcmA ABC-type transpor 99.5 5.5E-14 1.2E-18 130.7 8.7 160 225-399 23-193 (209)
386 PTZ00243 ABC transporter; Prov 99.5 5.2E-14 1.1E-18 170.4 11.0 172 226-421 682-865 (1560)
387 COG4778 PhnL ABC-type phosphon 99.5 2.1E-14 4.4E-19 131.4 5.3 159 226-392 33-207 (235)
388 COG0488 Uup ATPase components 99.5 1.4E-13 3.1E-18 149.2 9.5 147 226-397 344-498 (530)
389 PLN03130 ABC transporter C fam 99.4 1.1E-13 2.5E-18 167.8 8.9 168 226-421 639-823 (1622)
390 TIGR03594 GTPase_EngA ribosome 99.4 1E-12 2.2E-17 140.2 15.2 162 69-286 66-231 (429)
391 PLN03232 ABC transporter C fam 99.4 1.2E-13 2.6E-18 167.1 8.8 170 226-421 639-823 (1495)
392 cd03279 ABC_sbcCD SbcCD and ot 99.4 2.1E-13 4.6E-18 132.1 8.2 164 229-413 27-209 (213)
393 PRK00093 GTP-binding protein D 99.4 1.5E-12 3.2E-17 139.3 15.1 160 71-287 70-233 (435)
394 PRK03003 GTP-binding protein D 99.4 1.4E-12 3.1E-17 140.9 15.1 161 70-286 106-270 (472)
395 cd03271 ABC_UvrA_II The excisi 99.4 1.8E-13 3.9E-18 136.4 7.1 97 318-419 149-259 (261)
396 KOG0056 Heavy metal exporter H 99.4 1.3E-13 2.9E-18 143.1 5.6 187 225-423 559-758 (790)
397 cd03272 ABC_SMC3_euk Eukaryoti 99.4 2.5E-13 5.3E-18 133.9 5.7 68 333-405 153-229 (243)
398 cd03273 ABC_SMC2_euk Eukaryoti 99.4 1.7E-13 3.8E-18 136.0 3.1 71 331-406 159-238 (251)
399 KOG0054 Multidrug resistance-a 99.4 2.3E-12 4.9E-17 150.7 11.7 171 226-423 543-728 (1381)
400 COG1245 Predicted ATPase, RNas 99.3 2.2E-12 4.7E-17 133.6 9.1 165 224-412 361-531 (591)
401 PRK09518 bifunctional cytidyla 99.3 1.4E-11 3E-16 139.6 16.2 163 70-286 343-509 (712)
402 COG4138 BtuD ABC-type cobalami 99.3 5.9E-13 1.3E-17 122.4 3.2 192 227-442 22-230 (248)
403 KOG0054 Multidrug resistance-a 99.3 3.1E-12 6.8E-17 149.5 8.5 187 226-428 1162-1364(1381)
404 cd03274 ABC_SMC4_euk Eukaryoti 99.3 1.2E-13 2.7E-18 133.8 -3.1 77 325-409 115-201 (212)
405 COG1129 MglA ABC-type sugar tr 99.3 5.6E-12 1.2E-16 134.3 8.1 187 225-418 280-482 (500)
406 cd03240 ABC_Rad50 The catalyti 99.3 5.7E-12 1.2E-16 121.4 6.6 159 227-409 20-195 (204)
407 cd03276 ABC_SMC6_euk Eukaryoti 99.2 4.6E-11 1E-15 114.6 8.7 150 232-410 23-188 (198)
408 COG4178 ABC-type uncharacteriz 99.2 9.7E-11 2.1E-15 127.3 11.1 151 225-396 414-573 (604)
409 COG5265 ATM1 ABC-type transpor 99.2 2.3E-11 4.9E-16 125.3 5.8 185 225-421 284-481 (497)
410 KOG0066 eIF2-interacting prote 99.2 6.7E-11 1.5E-15 121.8 8.4 155 228-404 611-770 (807)
411 KOG0927 Predicted transporter 99.2 5E-11 1.1E-15 126.0 7.5 140 226-386 412-558 (614)
412 PRK00635 excinuclease ABC subu 99.1 9.1E-11 2E-15 140.8 8.2 98 320-422 791-902 (1809)
413 cd03275 ABC_SMC1_euk Eukaryoti 99.1 4.9E-11 1.1E-15 118.2 4.6 74 336-413 153-235 (247)
414 COG1245 Predicted ATPase, RNas 99.1 6.5E-11 1.4E-15 122.9 5.4 176 225-416 95-292 (591)
415 COG4615 PvdE ABC-type sideroph 99.1 7.9E-11 1.7E-15 120.4 5.7 179 226-425 345-536 (546)
416 COG4170 SapD ABC-type antimicr 99.1 2.6E-10 5.7E-15 107.9 8.2 220 226-454 29-272 (330)
417 COG3845 ABC-type uncharacteriz 99.1 3.1E-10 6.7E-15 119.3 9.5 190 226-422 280-488 (501)
418 PRK00349 uvrA excinuclease ABC 99.1 6.2E-11 1.3E-15 136.4 4.3 99 321-424 813-925 (943)
419 KOG0927 Predicted transporter 99.1 2.2E-10 4.9E-15 121.1 6.8 90 331-425 214-308 (614)
420 KOG0062 ATPase component of AB 99.0 3.4E-10 7.4E-15 119.2 7.4 165 226-415 102-273 (582)
421 KOG0065 Pleiotropic drug resis 99.0 8.1E-10 1.8E-14 127.3 7.3 192 226-424 137-349 (1391)
422 TIGR00630 uvra excinuclease AB 99.0 2.3E-10 5.1E-15 131.4 2.6 95 322-421 812-920 (924)
423 PF03193 DUF258: Protein of un 98.9 2.8E-09 6.1E-14 98.5 8.4 62 230-291 35-103 (161)
424 KOG2355 Predicted ABC-type tra 98.8 2.2E-08 4.7E-13 94.8 10.4 176 226-417 36-228 (291)
425 KOG0060 Long-chain acyl-CoA tr 98.8 2.1E-08 4.5E-13 107.2 10.9 161 226-403 457-633 (659)
426 cd03277 ABC_SMC5_euk Eukaryoti 98.8 6E-09 1.3E-13 101.2 5.3 78 332-413 120-210 (213)
427 cd03280 ABC_MutS2 MutS2 homolo 98.7 1.9E-09 4.1E-14 103.5 0.6 76 336-417 89-170 (200)
428 cd03239 ABC_SMC_head The struc 98.7 2.1E-08 4.7E-13 94.6 6.5 66 339-408 95-169 (178)
429 KOG0064 Peroxisomal long-chain 98.7 1.7E-08 3.7E-13 106.7 5.8 147 226-402 504-674 (728)
430 COG1159 Era GTPase [General fu 98.7 2.5E-08 5.5E-13 99.4 5.8 60 231-290 7-69 (298)
431 PRK00454 engB GTP-binding prot 98.7 4E-08 8.6E-13 92.9 6.9 154 230-385 24-194 (196)
432 cd03227 ABC_Class2 ABC-type Cl 98.7 5.2E-08 1.1E-12 90.4 7.1 63 339-405 78-149 (162)
433 KOG0062 ATPase component of AB 98.6 5.5E-08 1.2E-12 102.8 7.1 146 227-395 387-539 (582)
434 PF02421 FeoB_N: Ferrous iron 98.6 5.9E-08 1.3E-12 89.5 6.4 55 232-287 2-59 (156)
435 COG2401 ABC-type ATPase fused 98.6 8.3E-08 1.8E-12 99.1 6.7 145 226-395 405-566 (593)
436 KOG0063 RNAse L inhibitor, ABC 98.6 7.5E-08 1.6E-12 99.7 6.2 161 229-413 366-533 (592)
437 COG0218 Predicted GTPase [Gene 98.6 8.5E-08 1.9E-12 90.8 5.9 62 230-291 24-86 (200)
438 cd03283 ABC_MutS-like MutS-lik 98.5 1.2E-07 2.6E-12 91.1 6.0 45 359-403 104-154 (199)
439 COG0486 ThdF Predicted GTPase 98.5 4.7E-07 1E-11 95.4 9.6 63 224-286 211-276 (454)
440 cd03241 ABC_RecN RecN ATPase i 98.5 8.3E-08 1.8E-12 96.8 3.6 72 338-414 170-250 (276)
441 PF01926 MMR_HSR1: 50S ribosom 98.5 2.6E-07 5.7E-12 80.3 6.1 56 233-288 2-60 (116)
442 cd01876 YihA_EngB The YihA (En 98.4 1.7E-07 3.7E-12 85.0 3.4 56 233-288 2-58 (170)
443 PRK11058 GTPase HflX; Provisio 98.4 1.1E-06 2.4E-11 93.8 9.1 55 231-286 198-256 (426)
444 cd03243 ABC_MutS_homologs The 98.4 5.1E-07 1.1E-11 86.7 5.7 55 351-405 99-159 (202)
445 TIGR03156 GTP_HflX GTP-binding 98.3 2.7E-06 5.8E-11 88.8 9.8 56 230-286 189-248 (351)
446 COG0178 UvrA Excinuclease ATPa 98.3 1.5E-06 3.3E-11 96.4 7.6 114 324-442 808-934 (935)
447 PRK00635 excinuclease ABC subu 98.2 8.1E-07 1.8E-11 107.5 4.3 107 317-427 1678-1797(1809)
448 COG1160 Predicted GTPases [Gen 98.2 1.7E-06 3.6E-11 91.0 6.0 57 231-287 4-63 (444)
449 cd01894 EngA1 EngA1 subfamily. 98.2 2E-05 4.3E-10 70.9 11.5 75 71-150 66-141 (157)
450 TIGR00436 era GTP-binding prot 98.2 2.8E-06 6E-11 85.4 6.0 57 232-288 2-61 (270)
451 cd03282 ABC_MSH4_euk MutS4 hom 98.1 7.7E-07 1.7E-11 85.9 1.2 61 339-404 92-158 (204)
452 cd03285 ABC_MSH2_euk MutS2 hom 98.1 6.5E-07 1.4E-11 87.5 0.3 76 336-417 87-172 (222)
453 PRK12298 obgE GTPase CgtA; Rev 98.1 3.9E-06 8.5E-11 88.7 5.8 57 232-289 161-221 (390)
454 cd01852 AIG1 AIG1 (avrRpt2-ind 98.1 5.3E-06 1.1E-10 79.1 5.8 58 232-289 2-63 (196)
455 PTZ00132 GTP-binding nuclear p 98.1 8.5E-06 1.8E-10 78.7 7.0 37 351-387 161-207 (215)
456 cd01898 Obg Obg subfamily. Th 98.0 2.3E-05 5E-10 71.9 9.4 79 70-150 67-154 (170)
457 PRK00089 era GTPase Era; Revie 98.0 6.3E-06 1.4E-10 83.6 5.9 59 231-289 6-67 (292)
458 PTZ00258 GTP-binding protein; 98.0 7.4E-06 1.6E-10 86.2 6.1 60 228-288 19-98 (390)
459 KOG0066 eIF2-interacting prote 98.0 1.1E-05 2.3E-10 84.1 6.7 69 324-397 398-471 (807)
460 PRK09601 GTP-binding protein Y 98.0 1E-05 2.2E-10 84.3 6.3 56 231-287 3-78 (364)
461 PRK12299 obgE GTPase CgtA; Rev 98.0 4.5E-05 9.8E-10 79.1 11.1 80 69-150 224-311 (335)
462 KOG1191 Mitochondrial GTPase [ 98.0 7.5E-06 1.6E-10 86.5 5.3 62 226-287 264-328 (531)
463 cd03242 ABC_RecF RecF is a rec 98.0 1.8E-05 3.9E-10 79.6 7.8 60 337-403 182-255 (270)
464 cd01900 YchF YchF subfamily. 98.0 7.4E-06 1.6E-10 82.5 4.7 55 233-288 1-75 (274)
465 cd00820 PEPCK_HprK Phosphoenol 98.0 8E-06 1.7E-10 70.5 4.1 54 226-283 11-65 (107)
466 PF00009 GTP_EFTU: Elongation 98.0 0.00011 2.4E-09 69.5 12.4 79 69-150 81-170 (188)
467 cd01898 Obg Obg subfamily. Th 97.9 1.1E-05 2.4E-10 74.0 5.3 53 233-286 3-59 (170)
468 PRK05291 trmE tRNA modificatio 97.9 2.9E-05 6.3E-10 83.7 9.4 60 228-287 213-275 (449)
469 COG1084 Predicted GTPase [Gene 97.9 3.2E-05 6.9E-10 78.3 8.8 60 229-289 167-229 (346)
470 COG2262 HflX GTPases [General 97.9 6.6E-05 1.4E-09 78.2 11.2 55 231-286 193-251 (411)
471 KOG1423 Ras-like GTPase ERA [C 97.9 1.1E-05 2.4E-10 80.7 5.1 61 230-290 72-135 (379)
472 TIGR03598 GTPase_YsxC ribosome 97.9 1.5E-05 3.3E-10 74.7 5.5 59 230-288 18-77 (179)
473 cd04164 trmE TrmE (MnmE, ThdF, 97.9 1.7E-05 3.8E-10 71.2 5.6 57 230-286 1-60 (157)
474 cd01853 Toc34_like Toc34-like 97.9 1.5E-05 3.4E-10 79.2 5.6 60 229-288 30-92 (249)
475 PRK15494 era GTPase Era; Provi 97.9 1.8E-05 3.8E-10 82.3 6.2 57 232-288 54-113 (339)
476 PRK15467 ethanolamine utilizat 97.9 7E-05 1.5E-09 69.1 9.6 77 69-150 52-130 (158)
477 TIGR02729 Obg_CgtA Obg family 97.9 9.8E-05 2.1E-09 76.4 11.7 81 70-150 224-312 (329)
478 TIGR01069 mutS2 MutS2 family p 97.9 4.4E-06 9.6E-11 95.3 1.9 59 337-400 384-448 (771)
479 PRK12296 obgE GTPase CgtA; Rev 97.9 0.0001 2.2E-09 80.0 11.9 80 71-150 226-323 (500)
480 PRK00349 uvrA excinuclease ABC 97.9 7.3E-06 1.6E-10 95.0 3.3 97 320-421 471-580 (943)
481 cd04171 SelB SelB subfamily. 97.9 0.00012 2.6E-09 66.4 10.8 79 71-150 64-149 (164)
482 TIGR00630 uvra excinuclease AB 97.9 7.5E-06 1.6E-10 94.7 3.4 96 322-422 471-579 (924)
483 TIGR00436 era GTP-binding prot 97.8 0.00011 2.5E-09 73.7 10.6 77 71-150 69-147 (270)
484 TIGR02528 EutP ethanolamine ut 97.8 0.00011 2.4E-09 65.6 9.3 76 70-150 51-128 (142)
485 PF10662 PduV-EutP: Ethanolami 97.8 0.00013 2.8E-09 66.2 9.3 87 59-150 39-129 (143)
486 TIGR00450 mnmE_trmE_thdF tRNA 97.8 5E-05 1.1E-09 81.7 7.7 60 227-286 200-262 (442)
487 cd04163 Era Era subfamily. Er 97.8 3.9E-05 8.5E-10 69.1 5.8 58 231-288 4-64 (168)
488 PRK12299 obgE GTPase CgtA; Rev 97.8 2.8E-05 6.1E-10 80.6 5.3 55 232-287 160-218 (335)
489 cd01895 EngA2 EngA2 subfamily. 97.8 0.00018 4E-09 65.4 10.1 75 74-150 77-158 (174)
490 cd01878 HflX HflX subfamily. 97.8 0.00023 4.9E-09 67.9 11.1 78 70-150 109-188 (204)
491 smart00534 MUTSac ATPase domai 97.8 1.1E-05 2.3E-10 76.6 1.7 54 352-405 68-130 (185)
492 PRK07721 fliI flagellum-specif 97.7 0.00019 4.1E-09 77.0 11.3 166 225-424 153-341 (438)
493 cd01881 Obg_like The Obg-like 97.7 2.4E-05 5.2E-10 72.0 3.8 51 235-286 1-55 (176)
494 cd04104 p47_IIGP_like p47 (47- 97.7 4.1E-05 9E-10 73.2 5.3 57 232-288 3-65 (197)
495 PRK04213 GTP-binding protein; 97.7 4.4E-05 9.5E-10 72.6 5.4 54 230-285 9-62 (201)
496 cd04164 trmE TrmE (MnmE, ThdF, 97.7 0.00014 3.1E-09 65.1 8.6 71 71-150 70-140 (157)
497 KOG0063 RNAse L inhibitor, ABC 97.7 2.2E-05 4.8E-10 81.7 3.5 84 327-415 203-291 (592)
498 cd01881 Obg_like The Obg-like 97.7 0.00013 2.7E-09 67.2 8.2 80 71-150 64-160 (176)
499 PRK12297 obgE GTPase CgtA; Rev 97.7 5.3E-05 1.1E-09 80.9 5.7 55 232-287 160-218 (424)
500 cd01888 eIF2_gamma eIF2-gamma 97.7 0.00045 9.8E-09 66.3 11.7 79 70-150 95-182 (203)
No 1
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=100.00 E-value=6e-87 Score=687.63 Aligned_cols=455 Identities=49% Similarity=0.771 Sum_probs=364.3
Q ss_pred HHHHHhcCCCCcCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHhhhcCccccCcccccHHHHHHHHHHHhhCCEEEEE
Q 010472 9 KEEEALHAGNLRVPRRPPWNPSMSVEELDDNERQSFLAWRRSLARLEENEKLVLTPFEKNLDMWRQLWRVLERSDLIVMV 88 (509)
Q Consensus 9 ~~~~~~~~~~l~~prrP~w~~~~s~~~l~~~E~~~F~~wr~~l~~~~e~~~~~lt~fE~nle~wrql~rvie~sDvVl~V 88 (509)
+++|++|++.|+|||||+|++.||+|||+++|+++|++||+.|+.+++++++++||||+|||+|||||||||+|||||+|
T Consensus 102 ~~ee~~~~~~L~iPRRP~W~~~~s~eeLd~~EkeaFlewrr~L~~Lqe~e~l~lTpFErNLE~WRQLWRVlErSDivvqI 181 (562)
T KOG1424|consen 102 KQEEALNASRLDIPRRPPWTLEMSKEELDRQEKEAFLEWRRKLASLQENEKLVLTPFERNLEIWRQLWRVLERSDIVVQI 181 (562)
T ss_pred hhhhhhhcccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCeeechhhhCHHHHHHHHHHHhhcceEEEE
Confidence 77888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCeEEEeehhhhHHhhhccccccccccc
Q 010472 89 VDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWSAKAASAALEGKAVSDTWRTQ 168 (509)
Q Consensus 89 vDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~gi~~if~Sa~~~~~~~~g~~l~~~~~~~ 168 (509)
||||+|++|||++|+.|++++++.|..+||+||+||+|++++.+|++||.+.+|.++||||..++..++++.+...+...
T Consensus 182 VDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA~~at~~~~~~~~~e~~r~~ 261 (562)
T KOG1424|consen 182 VDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSALAATEQLESKVLKEDRRSL 261 (562)
T ss_pred eecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEecccccccccccchhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999988777776555443332
Q ss_pred ccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccccccCccCCCCcEEEEEecCCCCHhHHHH
Q 010472 169 DTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVDESFAGNVAPKNVIVGFVGYPNVGKSSTIN 248 (509)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~vglvG~nGaGKSTLln 248 (509)
........ .....+.+.++........+|.........+.- .....+.....-.+||+||+|||||||+||
T Consensus 262 d~~~~~~~-~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~--------~~~~t~~~~~~~vtVG~VGYPNVGKSSTIN 332 (562)
T KOG1424|consen 262 DGVSRALG-AIFVGEVDLKIARDKGDGEEIEDVEQLRLISAM--------EPTPTGERYKDVVTVGFVGYPNVGKSSTIN 332 (562)
T ss_pred cchhhhcc-ccccccchhhhhhhcccccchhhHHhhhhhhcc--------ccCCCCcCCCceeEEEeecCCCCchhHHHH
Confidence 21111111 222333443444433211222221111000000 000011222335799999999999999999
Q ss_pred HHhcCCcceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccCCcchhhhHHHHHHHHHHhCCccchh
Q 010472 249 ALVGQKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIE 328 (509)
Q Consensus 249 ~L~G~~~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~ 328 (509)
+|+|.++.+++.+||+|+|+|++.+...+.+|||||++||+|..+..++++.|++|+++++++..++..+++++++..|+
T Consensus 333 aLvG~KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPGLVfPSf~~~r~emvl~GiLPIDQmrd~~~~~~llaerIP~~~Le 412 (562)
T KOG1424|consen 333 ALVGRKKVSVSSTPGKTKHFQTIFLSPSVCLCDCPGLVFPSFSPTRAEMVLNGILPIDQLRDHYGAVGLLAERIPRHVLE 412 (562)
T ss_pred HHhcCceeeeecCCCCcceeEEEEcCCCceecCCCCccccCCCchHHHHHHhcCccHHHhhcccchHHHHHHhcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhccCCCCCCccccCCCchHHHHHHHHHHcCCceeCCCCCHHHHHHHHHHHHhhcCCccEEEcCCCCChhhcc----c
Q 010472 329 NVCKINLPKPKPYESQSRPPLALELLRAYCASRGYVASSGLPDETRAARIILKDFIDGKLPHFEMPPGMSHEEVG----M 404 (509)
Q Consensus 329 ~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lLPtsGLD~~~r~~~~lLkd~~~gkl~~~~~pp~~~~~~~~----~ 404 (509)
..|. +.+..++..+|+|++.+|+.|+|..+||+..+|++|..|+++.||+++.+|++.+|..||++.+..+. .
T Consensus 413 ~~Y~---~k~~e~~~~~~pp~A~ell~a~a~~RGfmts~~~~D~~RAAr~ILKDyv~GKL~~~~~PPg~~~~~~~~~~~p 489 (562)
T KOG1424|consen 413 RLYG---HKPREDPEDSRPPSAAELLNAYAYKRGFMTSKGLPDEYRAARYILKDYVSGKLLYCFPPPGYEPQKFTWEEHP 489 (562)
T ss_pred HHhC---CCcccccCCCCCchHHHHHHHHHHhcchhhhccCCcchHHHHHHHHHHhCCeeeeeeCCCCCCccccchhhCc
Confidence 8776 35566788889999999999999999999999999999999999999999999999999998777432 2
Q ss_pred hhhHhhcccccccCCCCcc-ccCcCCCCCCCccHHHHhccCCCcccccccccccccCCCCCCCccccCCccccCCCcccc
Q 010472 405 EDTQASSLLELHESDASDA-EEVPAHGDRTTPVLEHVLDDLSSFDLANGLASKKVNVKKPSASHKQHKKPQRKKDRSWRV 483 (509)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (509)
+......+-...+...++. .+..+-.+. --+++|+++++++.++|..+.+ +.|++..++.++.|++
T Consensus 490 e~~~~~~~~~~l~~~~~e~~~~~~~~~~~---~d~~~~~~~~~~~~~~g~~~~~----------~~~~~~~~~~~~~~~~ 556 (562)
T KOG1424|consen 490 ETTERVYLQDRLEGLQSEQEEEGEELSSS---VDEEFEDDLSSDAETNGDEETP----------TSAPGSENAGRNPYAL 556 (562)
T ss_pred hHhhhhhhhhhcCchhhhhhhhhhhhhhh---hhhhhccccchhhhcCcccccc----------ccCCcccccCCCcccc
Confidence 2222222222233222222 111111111 1289999999999999985333 6788889999999998
Q ss_pred cCCCC
Q 010472 484 SNDDG 488 (509)
Q Consensus 484 ~~~~~ 488 (509)
-|+++
T Consensus 557 ~~~~~ 561 (562)
T KOG1424|consen 557 LNEDG 561 (562)
T ss_pred ccccC
Confidence 77654
No 2
>KOG2484 consensus GTPase [General function prediction only]
Probab=100.00 E-value=8.5e-36 Score=300.83 Aligned_cols=271 Identities=28% Similarity=0.499 Sum_probs=217.8
Q ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCeEEEeehh
Q 010472 71 MWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 71 ~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~gi~~if~Sa~ 150 (509)
+...+.+|||.|||||+|+|||||+++||++.|+.+.....+|++||||||+||+|++.++.|+.||++.+++++|.+..
T Consensus 136 Y~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast 215 (435)
T KOG2484|consen 136 YDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKAST 215 (435)
T ss_pred HHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCcceeeccc
Confidence 55678899999999999999999999999999999876566799999999999999999999999999999999996543
Q ss_pred hhHHhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccccccCccCCCC
Q 010472 151 AASAALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVDESFAGNVAPKN 230 (509)
Q Consensus 151 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~g 230 (509)
... +.+ ........++|.+.|+..+...+. ...++..
T Consensus 216 ~~~----~~~------------~~~~~~s~c~gae~l~~~lgny~~---------------------------~~~lk~s 252 (435)
T KOG2484|consen 216 QMQ----NSN------------SKNLQSSVCFGAETLMKVLGNYCR---------------------------KGELKTS 252 (435)
T ss_pred ccc----ccc------------ccccccchhhhHHHHHHHhcCccc---------------------------ccccCcc
Confidence 110 000 011112345677777766654321 1235566
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccCCcchhhh
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVLPIDRMTE 310 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~~~~~~~~ 310 (509)
..+||||.||+||||+||.|.....+.++..||.|+..+...+...+.++|+||++|+...... ..++..+.++....+
T Consensus 253 IrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk~i~llDsPgiv~~~~~~~~-~~~Lrn~~~i~~~~d 331 (435)
T KOG2484|consen 253 IRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDKKIRLLDSPGIVPPSIDEKD-ALALRNCIPIGKVAD 331 (435)
T ss_pred eEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheeccCCceeccCCceeecCCCccc-hhhhhcccccccccC
Confidence 8999999999999999999998877899999999999999999999999999999999875444 466667777776667
Q ss_pred HHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCceeCCCCCHHHHHHHHHHHHhhcCCccE
Q 010472 311 HRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYVASSGLPDETRAARIILKDFIDGKLPH 390 (509)
Q Consensus 311 ~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lLPtsGLD~~~r~~~~lLkd~~~gkl~~ 390 (509)
+...+..+...+....+...|...... ....++..+|+..|.+-.+|+++...++..+|.||+.|++.|
T Consensus 332 p~~~v~~iL~~~~~e~~~~~Y~~~~~~-----------~~~~Fl~~~ar~~G~~~kGG~pd~~~AA~~vl~Dw~~Gki~y 400 (435)
T KOG2484|consen 332 PVTPVSCILKRCSKESRSVLYNIPSIR-----------ATDDFLEKFARRRGLLLKGGIPDVNAAAFAVLNDWRTGKIGY 400 (435)
T ss_pred ccchHHHHHHHhhHHHHHHHhcCCCcc-----------hHHHHHHHHHHHHhhhhcCCCCcHHHHHHHHHHhhccCceee
Confidence 667777777777765555545432111 125799999999999999999999999999999999999999
Q ss_pred EEcCCC
Q 010472 391 FEMPPG 396 (509)
Q Consensus 391 ~~~pp~ 396 (509)
|++||.
T Consensus 401 ~~~pp~ 406 (435)
T KOG2484|consen 401 YTLPPT 406 (435)
T ss_pred eeCCCh
Confidence 999998
No 3
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=100.00 E-value=5e-34 Score=286.14 Aligned_cols=271 Identities=31% Similarity=0.569 Sum_probs=226.1
Q ss_pred ccccc--HHHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC
Q 010472 64 PFEKN--LDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHD 141 (509)
Q Consensus 64 ~fE~n--le~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~g 141 (509)
.|++- -.+|-.|..||..|||||+|+|||+|+.+||..++.|+++-.++|.+|+||||+||+|..+..+|...|.+..
T Consensus 194 if~kGQSkRIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkey 273 (572)
T KOG2423|consen 194 IFSKGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEY 273 (572)
T ss_pred HHhccchhHHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhC
Confidence 45443 4799999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CeEEEeehhhhHHhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCccccccc
Q 010472 142 ILFVFWSAKAASAALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVDES 221 (509)
Q Consensus 142 i~~if~Sa~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~ 221 (509)
+++.|.+.. ++.+|...|++.|...+.-
T Consensus 274 PTiAfHAsi----------------------------~nsfGKgalI~llRQf~kL------------------------ 301 (572)
T KOG2423|consen 274 PTIAFHASI----------------------------NNSFGKGALIQLLRQFAKL------------------------ 301 (572)
T ss_pred cceeeehhh----------------------------cCccchhHHHHHHHHHHhh------------------------
Confidence 988885431 2235667888877654321
Q ss_pred ccCccCCCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 222 FAGNVAPKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 222 ~~~~~i~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
.+-.+..-||+||+||+|||++||.|.....+.++.++|.|+-.|-+.+...|.++||||+++|+- .+..+.++-|
T Consensus 302 ---h~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmkrIfLIDcPGvVyps~-dset~ivLkG 377 (572)
T KOG2423|consen 302 ---HSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMKRIFLIDCPGVVYPSS-DSETDIVLKG 377 (572)
T ss_pred ---ccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHhceeEecCCCccCCCC-CchHHHHhhc
Confidence 001244679999999999999999999888899999999999888888888999999999999986 5677889999
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCceeCCCCCHHHHHHHHHHH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYVASSGLPDETRAARIILK 381 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lLPtsGLD~~~r~~~~lLk 381 (509)
+.....+.++...+..+++++....|...|.+..- .+...|+.-||.+.|-|-++|-++.......+|+
T Consensus 378 vVRVenv~~pe~yi~~vl~R~k~ehl~rtYkI~~w-----------~d~~dfle~La~k~GkLlKGGEPd~~~vsKmvLn 446 (572)
T KOG2423|consen 378 VVRVENVKNPEDYIDGVLERCKPEHLSRTYKISGW-----------NDSTDFLEKLAIKQGKLLKGGEPDLVVVSKMVLN 446 (572)
T ss_pred eeeeeecCCHHHHHHHHHHhhhHHHHHhhhCCCcc-----------ccHHHHHHHHHHHhCccccCCCCchhHHHHHHhh
Confidence 98887777777778888887765555554544211 1347899999999999999999999889999999
Q ss_pred HhhcCCccEEEcCCCCChhh
Q 010472 382 DFIDGKLPHFEMPPGMSHEE 401 (509)
Q Consensus 382 d~~~gkl~~~~~pp~~~~~~ 401 (509)
+|..|++.+|.+||++....
T Consensus 447 DwqRGkiP~FVpPp~~e~~~ 466 (572)
T KOG2423|consen 447 DWQRGKIPFFVPPPGLEERA 466 (572)
T ss_pred HhhcCCCceecCCCcccccc
Confidence 99999999999999876543
No 4
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.97 E-value=1.6e-30 Score=266.36 Aligned_cols=276 Identities=34% Similarity=0.501 Sum_probs=198.0
Q ss_pred cccHHHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-CCeE
Q 010472 66 EKNLDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDH-DILF 144 (509)
Q Consensus 66 E~nle~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~-gi~~ 144 (509)
.+..++|+|++++++.+|+|++|||||+|++++++.+++++. .|+.++|+||+||+|+..+++|.+||.++ ++..
T Consensus 19 g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~----~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~ 94 (322)
T COG1161 19 GHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK----EKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKP 94 (322)
T ss_pred CchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHc----cCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCcc
Confidence 566899999999999999999999999999999999999986 56779999999999999999999999988 6667
Q ss_pred EEeehhhhHHhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHH-HHHHHHHhhcCCCCCCCCCccccccccc
Q 010472 145 VFWSAKAASAALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEA-EEIVKMRRQAGCSSTGKSNVQSVDESFA 223 (509)
Q Consensus 145 if~Sa~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~-~~i~~~r~~~~~~~~~~~~~~~~~~~~~ 223 (509)
++.+++. +.+.. .+...+.... +.+...+...
T Consensus 95 ~~v~~~~------~~~~~-----------------------~i~~~~~~~~~~~i~~~~~~~------------------ 127 (322)
T COG1161 95 IFVSAKS------RQGGK-----------------------KIRKALEKLSEEKIKRLKKKG------------------ 127 (322)
T ss_pred EEEEeec------ccCcc-----------------------chHHHHHHHHHHHHHHHhhcC------------------
Confidence 7777642 11111 1111111110 1111111110
Q ss_pred CccCCCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 224 GNVAPKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 224 ~~~i~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
.......++|||.||||||||||.|+|.....++.+||+|++.+++.+...+.++||||+++|.+... +.++.++.
T Consensus 128 --~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGii~~~~~~~--~~v~~~l~ 203 (322)
T COG1161 128 --LLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGIIPPKFDDD--ELVLLKLA 203 (322)
T ss_pred --CCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCCeEEecCCCcCCCCccch--HHHhhccc
Confidence 12345779999999999999999999998899999999999999999999999999999999998543 56777777
Q ss_pred CcchhhhHHHHHHHHHHhCCccc-hhhHhhccCCC-CCCccccCCCchHHHHHHHHHHcCC-ceeCCCCCHHHHHHHHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHV-IENVCKINLPK-PKPYESQSRPPLALELLRAYCASRG-YVASSGLPDETRAARIIL 380 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~-L~~~~~~~~~~-~LSgGq~QR~~~~~~La~ALa~~p~-lLPtsGLD~~~r~~~~lL 380 (509)
+.+.+.+.......+...+-... +...|...... .+..+. ........+...++..++ .+-..|.++..+++..++
T Consensus 204 ~~~~Ik~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~~~~~l~~~a~~rg~~l~~~g~~d~~~~~~~~~ 282 (322)
T COG1161 204 PKGEIKDPVLPADEVAERLLGGLLIDEHYGEKLNITRYESNP-IHRTDPEEFLELIAKKRGWLLLKGGEPDLERAAETIL 282 (322)
T ss_pred cccccCccccChHHHHHHHHhhhhhhhhhhHhhCCccccccc-ccccCHHHHHHHHHHHhhhhhcCCCCccHHHHHHHHH
Confidence 76665544333333332221100 11112211111 111111 111234778899999999 556667889999999999
Q ss_pred HHhhcCCccEEEcCCCC
Q 010472 381 KDFIDGKLPHFEMPPGM 397 (509)
Q Consensus 381 kd~~~gkl~~~~~pp~~ 397 (509)
++++.|++++++.|+..
T Consensus 283 ~d~~~gklg~~~~~~~~ 299 (322)
T COG1161 283 KDIRNGKLGWFSLEEPE 299 (322)
T ss_pred HHHHhCCcceeecCCcc
Confidence 99999999999999864
No 5
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.97 E-value=9.4e-30 Score=257.35 Aligned_cols=270 Identities=27% Similarity=0.440 Sum_probs=197.8
Q ss_pred cCccccc-HHHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHHHHHHHHHHhc
Q 010472 62 LTPFEKN-LDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDH 140 (509)
Q Consensus 62 lt~fE~n-le~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~ 140 (509)
+++|--+ -..|+|+|++++.+|+||+|+|||+|+.++++.++.++. +|++|+|+||+||++....+.|.+||.+.
T Consensus 4 ~~wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~----~kp~iiVlNK~DL~~~~~~~~~~~~~~~~ 79 (287)
T PRK09563 4 IQWFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG----NKPRLLILNKSDLADPEVTKKWIEYFEEQ 79 (287)
T ss_pred CcCcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC----CCCEEEEEEchhcCCHHHHHHHHHHHHHc
Confidence 3455444 368999999999999999999999999999988877653 78999999999999887778999999877
Q ss_pred CCeEEEeehhhhHHhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccc
Q 010472 141 DILFVFWSAKAASAALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVDE 220 (509)
Q Consensus 141 gi~~if~Sa~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~~~~~~~~~ 220 (509)
+..++++|++ .+. +.++|++.+.....+........
T Consensus 80 ~~~vi~vSa~------~~~-----------------------gi~~L~~~l~~~l~~~~~~~~~~--------------- 115 (287)
T PRK09563 80 GIKALAINAK------KGQ-----------------------GVKKILKAAKKLLKEKNERRKAK--------------- 115 (287)
T ss_pred CCeEEEEECC------Ccc-----------------------cHHHHHHHHHHHHHHHHhhhhhc---------------
Confidence 7777888874 222 34566666655443321111100
Q ss_pred cccCccCCCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHH--HHH
Q 010472 221 SFAGNVAPKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRY--DMV 298 (509)
Q Consensus 221 ~~~~~~i~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~--e~v 298 (509)
.....+..++|+|.||||||||||+|.|.....++..+|+|++.+...+...+.++||||+++|.+..... ..+
T Consensus 116 ----~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~~~~~~~~~~~l~ 191 (287)
T PRK09563 116 ----GMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGKGLELLDTPGILWPKLEDQEVGLKLA 191 (287)
T ss_pred ----ccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeCCcEEEEECCCcCCCCCCcHHHHHHHH
Confidence 01234578999999999999999999998777888999999998888877889999999999998754332 234
Q ss_pred HhccCCcchhhhHHHHHHHHHHhCCccc---hhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCceeCCCCCHHHHH
Q 010472 299 ASGVLPIDRMTEHRQAVQVVANRVPRHV---IENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYVASSGLPDETRA 375 (509)
Q Consensus 299 ~~g~~~~~~~~~~~~~~~~i~~~l~~~~---L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lLPtsGLD~~~r~ 375 (509)
+.|..... ..+.......+...+.+.. +...|....+ ..++.+++.++|.+.+++-.+|.+|..++
T Consensus 192 ~~~~i~~~-~~~~~~~~~~ll~~l~~~~~~~l~~~y~~~~~----------~~~~~~~l~~~a~~~g~~~k~g~~D~~~a 260 (287)
T PRK09563 192 LTGAIKDE-ALDLEEVAIFALEYLSKHYPERLKERYKLDEL----------PEDILELLEAIARKRGALRKGGEIDYERA 260 (287)
T ss_pred HhCCcchh-hcChHHHHHHHHHHHHhhCHHHHHHHhCCCCC----------CCCHHHHHHHHHHHhCccccCCccCHHHH
Confidence 55554322 2222233344444443322 2223332111 12458899999999999988999999999
Q ss_pred HHHHHHHhhcCCccEEEcC
Q 010472 376 ARIILKDFIDGKLPHFEMP 394 (509)
Q Consensus 376 ~~~lLkd~~~gkl~~~~~p 394 (509)
++.+|++|+.|+++.++++
T Consensus 261 a~~~l~d~~~Gklg~~~ld 279 (287)
T PRK09563 261 SELLLNEFRNGKLGKITLE 279 (287)
T ss_pred HHHHHHHHHcCCCCcEEcc
Confidence 9999999999999888765
No 6
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.97 E-value=1.7e-29 Score=254.09 Aligned_cols=262 Identities=30% Similarity=0.448 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCeEEEee
Q 010472 69 LDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWS 148 (509)
Q Consensus 69 le~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~gi~~if~S 148 (509)
...|+|++++++.+|+||+|+|||+|+.++++.+++++ .++|+|+|+||+||+++.....|.+||.+.+..++++|
T Consensus 9 ~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iS 84 (276)
T TIGR03596 9 AKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR----GNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAIN 84 (276)
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH----CCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 36899999999999999999999999999998888776 37899999999999988777889999987777778888
Q ss_pred hhhhHHhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccccccCccCC
Q 010472 149 AKAASAALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVDESFAGNVAP 228 (509)
Q Consensus 149 a~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~ 228 (509)
++ ++. +.++|++.+.+.+.+........ ....
T Consensus 85 a~------~~~-----------------------gi~~L~~~i~~~~~~~~~~~~~~-------------------~~~~ 116 (276)
T TIGR03596 85 AK------KGK-----------------------GVKKIIKAAKKLLKEKNEKLKAK-------------------GLKN 116 (276)
T ss_pred CC------Ccc-----------------------cHHHHHHHHHHHHHHhhhhhhhc-------------------cCCC
Confidence 75 222 34566666655443221111000 0012
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccH--HHHHHhccCCcc
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISR--YDMVASGVLPID 306 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~--~e~v~~g~~~~~ 306 (509)
.+..+++||.||+|||||||.|.|.....++..+|+|+..+...+...+.++||||+++|.+.... ....+.|+.+..
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~l~~~g~i~~~ 196 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLSDGLELLDTPGILWPKFEDQEVGLKLAATGAIKDE 196 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeCCCEEEEECCCcccCCCCchHHHHHHHHhCCcccc
Confidence 456799999999999999999999877778889999998888877778999999999999875432 234556655432
Q ss_pred hhhhHHHHHHHHHHhCCcc---chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCceeCCCCCHHHHHHHHHHHHh
Q 010472 307 RMTEHRQAVQVVANRVPRH---VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYVASSGLPDETRAARIILKDF 383 (509)
Q Consensus 307 ~~~~~~~~~~~i~~~l~~~---~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lLPtsGLD~~~r~~~~lLkd~ 383 (509)
.+ +.......+.+.+.+. .+...|....+. .++.+++.++|.+.+++-.+|.+|..++++.+|++|
T Consensus 197 ~~-~~~~~~~~~~~~l~~~~~~~l~~~y~i~~~~----------~~~~~~l~~~a~~~g~~~k~g~~D~~~aa~~~l~d~ 265 (276)
T TIGR03596 197 AL-DLEDVALFLLEYLLEHYPERLKERYKLDELP----------EDIVELLEAIAKKRGCLLKGGELDLDRAAEILLNDF 265 (276)
T ss_pred cC-ChHHHHHHHHHHHHhhCHHHHHHHhCcCCCC----------CCHHHHHHHHHHHhCccccCCccCHHHHHHHHHHHH
Confidence 22 2233334444444332 233334332111 134889999999999998899999999999999999
Q ss_pred hcCCccEEEc
Q 010472 384 IDGKLPHFEM 393 (509)
Q Consensus 384 ~~gkl~~~~~ 393 (509)
+.|+++.+++
T Consensus 266 ~~Gklg~~~l 275 (276)
T TIGR03596 266 RKGKLGRITL 275 (276)
T ss_pred HcCCCCceec
Confidence 9999998875
No 7
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=7.1e-31 Score=247.52 Aligned_cols=207 Identities=14% Similarity=0.152 Sum_probs=176.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc--ceeeecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF--QTLIISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~--~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
++.+|++++||||+||||||||+||.++.. .|.+.+.|..... ....++..+++++|...+||.+ ++.+|+..+
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHl--TvleNv~la 101 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHL--TVLENVTLA 101 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccc--hHHHHHHhh
Confidence 478999999999999999999999999987 8999999964322 3344677899999999999999 677888776
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
....... ...++.+.+.+++.+++|.+ ..+.+|..|||||+|| ++||||||.+|+++ |||+|||+.. .+
T Consensus 102 p~~v~~~-~k~eA~~~A~~lL~~VGL~~-ka~~yP~qLSGGQqQR----VAIARALaM~P~vmLFDEPTSALDPElv~EV 175 (240)
T COG1126 102 PVKVKKL-SKAEAREKALELLEKVGLAD-KADAYPAQLSGGQQQR----VAIARALAMDPKVMLFDEPTSALDPELVGEV 175 (240)
T ss_pred hHHHcCC-CHHHHHHHHHHHHHHcCchh-hhhhCccccCcHHHHH----HHHHHHHcCCCCEEeecCCcccCCHHHHHHH
Confidence 4432222 33567777888888999998 7788999999999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhccC
Q 010472 377 RIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDDL 444 (509)
Q Consensus 377 ~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (509)
..+++++++.+++.+..+|.|.-|..+++++.++++|.+++.++++..+.... .|...++|+.+
T Consensus 176 L~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~----~~R~~~FL~~i 239 (240)
T COG1126 176 LDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK----SERTRQFLSKI 239 (240)
T ss_pred HHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC----CHHHHHHHHhh
Confidence 99999999988999999999999999999999999998888777777776544 37788877643
No 8
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=5.8e-27 Score=231.44 Aligned_cols=211 Identities=18% Similarity=0.145 Sum_probs=175.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc----ceeeecCeEEEEeCCCccCCCCcccHHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF----QTLIISEKLVLCDCPGLVFPSFSISRYDMVA 299 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~----~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~ 299 (509)
++++|+++||||++|||||||+++|.++.. +|.+.+.|..... .....++.+++++|...++.+. ++++|+.
T Consensus 28 ~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssr--TV~~NvA 105 (339)
T COG1135 28 EIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR--TVFENVA 105 (339)
T ss_pred EEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccc--hHHhhhh
Confidence 578999999999999999999999999987 8999999954321 2234567899999987776655 7788887
Q ss_pred hccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-
Q 010472 300 SGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR- 374 (509)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r- 374 (509)
+.+.-.. ....+..+++.++++.++|.+ ....+|..|||||+|| ++||||||.+|++| +||+|||.+.
T Consensus 106 ~PLeiag--~~k~ei~~RV~elLelVgL~d-k~~~yP~qLSGGQKQR----VaIARALa~~P~iLL~DEaTSALDP~TT~ 178 (339)
T COG1135 106 FPLELAG--VPKAEIKQRVAELLELVGLSD-KADRYPAQLSGGQKQR----VAIARALANNPKILLCDEATSALDPETTQ 178 (339)
T ss_pred hhHhhcC--CCHHHHHHHHHHHHHHcCChh-hhccCchhcCcchhhH----HHHHHHHhcCCCEEEecCccccCChHHHH
Confidence 6543222 123456677888888888987 7789999999999999 99999999999998 9999999999
Q ss_pred HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhccCCCccc
Q 010472 375 AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDDLSSFDL 449 (509)
Q Consensus 375 ~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (509)
.+..+|+++++ -+++++..+|.|+-....|+++++++.|++++.++....+.... .+..+++++....++.
T Consensus 179 sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk----~~~t~~fi~~~~~~~~ 250 (339)
T COG1135 179 SILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPK----HAITQEFIGETLEIDL 250 (339)
T ss_pred HHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcc----hHHHHHHHHhhccccC
Confidence 99999999976 58999999999999999999999999999999999988887654 2667888876655554
No 9
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.94 E-value=5.4e-27 Score=224.42 Aligned_cols=208 Identities=13% Similarity=0.163 Sum_probs=173.5
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc----ceeeecCeEEEEeCCCccCCCCcccHHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF----QTLIISEKLVLCDCPGLVFPSFSISRYDMVA 299 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~----~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~ 299 (509)
++++|++++|+|++|+|||||+++|.|+.+ .|.+.+.|..... ....++.++++++|.|.+|.++ ++++|+.
T Consensus 30 ~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssl--tV~eNVa 107 (263)
T COG1127 30 DVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSL--TVFENVA 107 (263)
T ss_pred eecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeecccccccc--chhHhhh
Confidence 578999999999999999999999999988 8999999987532 2234577899999999999998 7788887
Q ss_pred hccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-
Q 010472 300 SGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR- 374 (509)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r- 374 (509)
+.++-.... ......+.+...++.++|.......+|.+|||||++| ++||||+|.+|.++ ||+||||.+.
T Consensus 108 fplre~~~l-p~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KR----vaLARAialdPell~~DEPtsGLDPI~a~ 182 (263)
T COG1127 108 FPLREHTKL-PESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKR----VALARAIALDPELLFLDEPTSGLDPISAG 182 (263)
T ss_pred eehHhhccC-CHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHH----HHHHHHHhcCCCEEEecCCCCCCCcchHH
Confidence 755433222 1223344566667777887644678899999999999 99999999999998 9999999999
Q ss_pred HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhccCC
Q 010472 375 AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDDLS 445 (509)
Q Consensus 375 ~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (509)
.+-++|+++++ -.++++..+|+++....++++++++..|++...++.+....+++ |.++++|....
T Consensus 183 ~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~sd~-----P~v~qf~~G~~ 249 (263)
T COG1127 183 VIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDD-----PWVRQFFNGIR 249 (263)
T ss_pred HHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhCCC-----HHHHHHhcCCC
Confidence 99999999987 57899999999999999999999999999988888777766655 99999998653
No 10
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=5.8e-27 Score=220.33 Aligned_cols=195 Identities=18% Similarity=0.166 Sum_probs=156.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCccccc---ceeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHF---QTLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~---~~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
.++++.+++||||+||||||||++|..+.. .|.+.+.|..... ....+++.+++++|....|| + +.+
T Consensus 29 ~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~--SIy 105 (253)
T COG1117 29 DIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-M--SIY 105 (253)
T ss_pred eccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-c--hHH
Confidence 477899999999999999999999988754 5899999977543 23456788999999888888 3 789
Q ss_pred HHHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhh---ccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCC
Q 010472 296 DMVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCK---INLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSG 368 (509)
Q Consensus 296 e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~---~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsG 368 (509)
+|+..|..... +.+ ...-+.+...+....|.+... ...+..|||||+|| ++||||||.+|.+| ||++
T Consensus 106 dNVayG~r~~g-~~~-~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQR----LcIARalAv~PeVlLmDEPtSA 179 (253)
T COG1117 106 DNVAYGLRLHG-IKD-KELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQR----LCIARALAVKPEVLLMDEPTSA 179 (253)
T ss_pred HHHHHhHHhhc-cch-HHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHH----HHHHHHHhcCCcEEEecCcccc
Confidence 99999865322 222 222233333343334433222 34466799999999 99999999999998 9999
Q ss_pred CCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCC
Q 010472 369 LPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHG 430 (509)
Q Consensus 369 LD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (509)
|||.+. .+-++|.+++ .+.+++..+|+|.++..++++++++..|+++|+++++..+.+..+
T Consensus 180 LDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~P~~ 241 (253)
T COG1117 180 LDPISTLKIEELITELK-KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTNPKH 241 (253)
T ss_pred cCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcCccH
Confidence 999999 9999999998 778889999999999999999999999999999999999987553
No 11
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.93 E-value=8.8e-27 Score=228.96 Aligned_cols=203 Identities=15% Similarity=0.134 Sum_probs=164.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++++|++++|+|||||||||||++|+|+++ .|.+.+.|...+. ....+.+.++|++|.......+ ++++.+..|.
T Consensus 24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~--tV~d~V~~GR 101 (258)
T COG1120 24 SIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGL--TVYELVLLGR 101 (258)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCc--EEeehHhhcC
Confidence 578899999999999999999999999887 8999999987543 3344567899999976554444 7889999999
Q ss_pred CCcchhhh--HHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-H
Q 010472 303 LPIDRMTE--HRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-A 375 (509)
Q Consensus 303 ~~~~~~~~--~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~ 375 (509)
+|...... ..+..+.+.+.+...++.+ +..+...+|||||+|| +.||+|||++|++| ||+.||..++ .
T Consensus 102 ~p~~~~~~~~~~~D~~~v~~aL~~~~~~~-la~r~~~~LSGGerQr----v~iArALaQ~~~iLLLDEPTs~LDi~~Q~e 176 (258)
T COG1120 102 YPHLGLFGRPSKEDEEIVEEALELLGLEH-LADRPVDELSGGERQR----VLIARALAQETPILLLDEPTSHLDIAHQIE 176 (258)
T ss_pred CcccccccCCCHhHHHHHHHHHHHhCcHH-HhcCcccccChhHHHH----HHHHHHHhcCCCEEEeCCCccccCHHHHHH
Confidence 88533222 2233335555666667777 7788899999999999 99999999999998 9999999999 9
Q ss_pred HHHHHHHhh-cCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhc
Q 010472 376 ARIILKDFI-DGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLD 442 (509)
Q Consensus 376 ~~~lLkd~~-~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (509)
++++|+++. +.+++++..-|+.+.+...|+.+.++..|+++..+.++..-. ...++++|+
T Consensus 177 vl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT-------~e~l~~Vyg 237 (258)
T COG1120 177 VLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT-------EENLREVYG 237 (258)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC-------HHHHHHHhC
Confidence 999999998 457888899999988888888888888888877666544332 268899988
No 12
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.6e-25 Score=219.18 Aligned_cols=202 Identities=15% Similarity=0.122 Sum_probs=161.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++++|++++||||||||||||+++|+|+++ .|++.+.|...... .-...++|++|...+-..|+.++.+.+..|.+
T Consensus 26 ~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~--~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~ 103 (254)
T COG1121 26 SVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKR--RKRLRIGYVPQKSSVDRSFPITVKDVVLLGRY 103 (254)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccc--ccCCeEEEcCcccccCCCCCcCHHHHHHccCc
Confidence 478899999999999999999999999776 89999888653221 11357999999777778888999999999977
Q ss_pred Ccchhhh--HHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 304 PIDRMTE--HRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 304 ~~~~~~~--~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
+...+.. .....+.+.+.+.++++.+ |..+....|||||+|| +-|||||+.+|++| |++|+|+.++ .+
T Consensus 104 ~~~g~~~~~~~~d~~~v~~aL~~Vgm~~-~~~r~i~~LSGGQ~QR----V~lARAL~~~p~lllLDEP~~gvD~~~~~~i 178 (254)
T COG1121 104 GKKGWFRRLNKKDKEKVDEALERVGMED-LRDRQIGELSGGQKQR----VLLARALAQNPDLLLLDEPFTGVDVAGQKEI 178 (254)
T ss_pred ccccccccccHHHHHHHHHHHHHcCchh-hhCCcccccCcHHHHH----HHHHHHhccCCCEEEecCCcccCCHHHHHHH
Confidence 6432211 1222455666666777887 8889999999999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhc
Q 010472 377 RIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLD 442 (509)
Q Consensus 377 ~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (509)
.++|+++++.+.+++...|++....-.++.++.+.+..+..+.+.+...+ ++++.+++
T Consensus 179 ~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~~~G~~~~~~~~--------~~l~~~~g 236 (254)
T COG1121 179 YDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEEVLTE--------ENLEKAFG 236 (254)
T ss_pred HHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeEeccChhhccCH--------HHHHHHhC
Confidence 99999999878888899999999888777777777666666655544432 56777776
No 13
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.92 E-value=1.5e-24 Score=196.55 Aligned_cols=141 Identities=62% Similarity=1.125 Sum_probs=122.8
Q ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCeEEEeehh
Q 010472 71 MWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 71 ~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~gi~~if~Sa~ 150 (509)
+|+++|+.++++|+||+|+|+|+|..+....+.+++.....++|+++|+||+||++++....|.++|.+.+..++++||.
T Consensus 1 ~~~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~ 80 (141)
T cd01857 1 VWRQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSAL 80 (141)
T ss_pred CHHHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEec
Confidence 59999999999999999999999999888888888876445899999999999999888889999999988888888873
Q ss_pred hhHHhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccccccCccCCCC
Q 010472 151 AASAALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVDESFAGNVAPKN 230 (509)
Q Consensus 151 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~g 230 (509)
. + .
T Consensus 81 ~------~-----------------------------------------------------------------------~ 83 (141)
T cd01857 81 K------E-----------------------------------------------------------------------N 83 (141)
T ss_pred C------C-----------------------------------------------------------------------C
Confidence 1 0 0
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeecCeEEEEeCCCccCC
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFP 288 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p 288 (509)
..++++|.+|+|||||+|.|+|.....+...+|.|++.+...+...+.++||||+++|
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~p 141 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTPTITLCDCPGLVFP 141 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCCCEEEEECCCcCCC
Confidence 1688999999999999999999876666778899998888777778999999999987
No 14
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.92 E-value=1.3e-25 Score=229.75 Aligned_cols=210 Identities=15% Similarity=0.125 Sum_probs=175.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|||||||||||++|+|+.. .|.+.+.|....... ...+.+++++|...+||.+ ++.+|+.+|+.
T Consensus 27 ~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lp-p~kR~ig~VFQ~YALFPHl--tV~~NVafGLk 103 (352)
T COG3842 27 DIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP-PEKRPIGMVFQSYALFPHM--TVEENVAFGLK 103 (352)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC-hhhcccceeecCcccCCCC--cHHHHhhhhhh
Confidence 478999999999999999999999999987 899999998764422 3356799999999999999 78999999986
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
.. ......+..+++.+.+..++|.. |..+.|..|||||+|| ++|||||+.+|++| |.++||-..| .++.
T Consensus 104 ~~-~~~~~~~i~~rv~e~L~lV~L~~-~~~R~p~qLSGGQqQR----VALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~ 177 (352)
T COG3842 104 VR-KKLKKAEIKARVEEALELVGLEG-FADRKPHQLSGGQQQR----VALARALVPEPKVLLLDEPLSALDAKLREQMRK 177 (352)
T ss_pred hc-CCCCHHHHHHHHHHHHHHcCchh-hhhhChhhhChHHHHH----HHHHHHhhcCcchhhhcCcccchhHHHHHHHHH
Confidence 21 11122234556777777778888 8889999999999999 99999999999998 9999999999 9998
Q ss_pred HHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCC-ccccCcCCCCCCCccHHHHhccCCCccc
Q 010472 379 ILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS-DAEEVPAHGDRTTPVLEHVLDDLSSFDL 449 (509)
Q Consensus 379 lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (509)
-|+.+.+ -+++++..+|+-.++-.+++.+++|..|+|...++. +.+..-.+ .-+.+++++.+-|+.
T Consensus 178 Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~-----~fVA~FiG~~N~l~~ 245 (352)
T COG3842 178 ELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPAT-----RFVADFIGESNIFEG 245 (352)
T ss_pred HHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcch-----HHHHHHhCcceeeee
Confidence 8888864 589999999999999999999999999999885554 66655333 568899998887776
No 15
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.5e-25 Score=216.84 Aligned_cols=175 Identities=14% Similarity=0.102 Sum_probs=147.5
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++||||+|||||||||+|+|+.. .|++.+.|.... .....++|++|...+||-. ++.+|+..++.
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~----~p~~~~~~vFQ~~~LlPW~--Tv~~NV~l~l~ 98 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVT----GPGPDIGYVFQEDALLPWL--TVLDNVALGLE 98 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccC----CCCCCEEEEeccCcccchh--hHHhhheehhh
Confidence 478999999999999999999999999988 788999987652 1245689999999999988 77889888765
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
... ....+..+.+.+.+..++|.. +...+|.+|||||+|| ++|||||+.+|++| |+++||..+| .+.+
T Consensus 99 ~~~--~~~~e~~~~a~~~L~~VgL~~-~~~~~P~qLSGGMrQR----VaiARAL~~~P~lLLlDEPFgALDalTR~~lq~ 171 (248)
T COG1116 99 LRG--KSKAEARERAKELLELVGLAG-FEDKYPHQLSGGMRQR----VAIARALATRPKLLLLDEPFGALDALTREELQD 171 (248)
T ss_pred ccc--cchHhHHHHHHHHHHHcCCcc-hhhcCccccChHHHHH----HHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHH
Confidence 432 122334446777777888888 8889999999999999 99999999999998 9999999999 8877
Q ss_pred HHHHh-hcCCccEEEcCCCCChhhccchhhHhhccc
Q 010472 379 ILKDF-IDGKLPHFEMPPGMSHEEVGMEDTQASSLL 413 (509)
Q Consensus 379 lLkd~-~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~ 413 (509)
.|.++ .+.+.+++..+|+.+++-|.++++.++..+
T Consensus 172 ~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 172 ELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 77665 567899999999999999999999988774
No 16
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.92 E-value=1.3e-25 Score=216.14 Aligned_cols=206 Identities=13% Similarity=0.094 Sum_probs=166.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccc-cceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKH-FQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~-~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
+++.|+++++||++||||||+|++|.++.. +|.+.++|.+.. .....++.+++|+-|.--+||.+ ++.+|+..-
T Consensus 23 ~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~--Tv~eNIa~V- 99 (309)
T COG1125 23 TIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHL--TVAENIATV- 99 (309)
T ss_pred EecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCc--cHHHHHHhh-
Confidence 578999999999999999999999999987 899999998743 34566788899987777779999 566666442
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchhh-HhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIEN-VCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~~-~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
|.-...+.....+++.+.+..++|.. .|..++|.+|||||+|| +.++||||.+|.++ |+++|||.+| .+
T Consensus 100 -P~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQR----VGv~RALAadP~ilLMDEPFgALDpI~R~~l 174 (309)
T COG1125 100 -PKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQR----VGVARALAADPPILLMDEPFGALDPITRKQL 174 (309)
T ss_pred -hhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhH----HHHHHHHhcCCCeEeecCCccccChhhHHHH
Confidence 21111233345556777777778864 49999999999999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCC-ccccCcCCCCCCCccHHHHhccC
Q 010472 377 RIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS-DAEEVPAHGDRTTPVLEHVLDDL 444 (509)
Q Consensus 377 ~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 444 (509)
.+.+..+.+ =+.+++..+|++++|-...+.+++|..|+++.++.. +...+-++ .-++++|+.-
T Consensus 175 Q~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan-----~FV~~f~g~~ 239 (309)
T COG1125 175 QEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPAN-----DFVEDFFGES 239 (309)
T ss_pred HHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccH-----HHHHHHhccc
Confidence 999999876 377888999999999999999999999999987665 44444333 4567777654
No 17
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.92 E-value=2.6e-25 Score=213.64 Aligned_cols=211 Identities=14% Similarity=0.130 Sum_probs=168.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce--eeecCeEEEEeC--CCccCCCCcccHHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT--LIISEKLVLCDC--PGLVFPSFSISRYDMVA 299 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~--~~~~~~i~l~d~--pg~~~p~~~~~~~e~v~ 299 (509)
++.+|+++||||++|||||||.++|+|+.+ .|.+.+.|....... ......+.+++| .+.+-|.. ++...+.
T Consensus 29 ~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~--tv~~~l~ 106 (252)
T COG1124 29 EIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRR--TVGRILS 106 (252)
T ss_pred EecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcch--hHHHHHh
Confidence 478999999999999999999999999987 899999996543211 122344555555 45555655 4444454
Q ss_pred hccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-
Q 010472 300 SGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR- 374 (509)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r- 374 (509)
.++.+ ..+. ...+.+.+.+..++|...+..+.|.+|||||+|| ++|||||+.+|++| ||++||...+
T Consensus 107 Epl~~-~~~~---~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QR----iaIARAL~~~PklLIlDEptSaLD~siQa 178 (252)
T COG1124 107 EPLRP-HGLS---KSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQR----IAIARALIPEPKLLILDEPTSALDVSVQA 178 (252)
T ss_pred hhhcc-CCcc---HHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHH----HHHHHHhccCCCEEEecCchhhhcHHHHH
Confidence 44433 1111 1222366667777887778899999999999999 99999999999998 9999999999
Q ss_pred HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhccCCCcccc
Q 010472 375 AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDDLSSFDLA 450 (509)
Q Consensus 375 ~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (509)
.++++|.++++ .+++|+...|++.-.++.|+++++|+.|.+++..++....+... .|+-+.++++.++|+..
T Consensus 179 ~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~~~----h~ytr~Ll~a~~~~~~~ 251 (252)
T COG1124 179 QILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPS----HPYTRELLEAVPSIDPP 251 (252)
T ss_pred HHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcCCc----cHHHHHHHHhhhccccC
Confidence 99999999976 57999999999999999999999999999999999988776533 48899999999988753
No 18
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.92 E-value=3.5e-24 Score=197.52 Aligned_cols=156 Identities=35% Similarity=0.634 Sum_probs=122.9
Q ss_pred HHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCe-EEEeehhhh
Q 010472 74 QLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDIL-FVFWSAKAA 152 (509)
Q Consensus 74 ql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~gi~-~if~Sa~~~ 152 (509)
|+|+.++.+|+|++|+|+++|....+..+.+++.....++|+|+|+||+||++++....|..+|.+.... ++..||+
T Consensus 1 ~~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~-- 78 (157)
T cd01858 1 ELYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASIN-- 78 (157)
T ss_pred ChhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeecc--
Confidence 6899999999999999999999888888888887654468999999999999998888899999765422 2335653
Q ss_pred HHhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccccccCccCCCCcE
Q 010472 153 SAALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVDESFAGNVAPKNVI 232 (509)
Q Consensus 153 ~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~ 232 (509)
.+ .+.++|++.+...... .. -..+..
T Consensus 79 ----~~-----------------------~~~~~L~~~l~~~~~~----~~-----------------------~~~~~~ 104 (157)
T cd01858 79 ----NP-----------------------FGKGSLIQLLRQFSKL----HS-----------------------DKKQIS 104 (157)
T ss_pred ----cc-----------------------ccHHHHHHHHHHHHhh----hc-----------------------cccceE
Confidence 22 2345677776543221 00 012457
Q ss_pred EEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeecCeEEEEeCCCc
Q 010472 233 VGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGL 285 (509)
Q Consensus 233 vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~ 285 (509)
++++|.||||||||+|+|.|.....++.++|+|++.+...+...+.++||||+
T Consensus 105 v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liDtPGi 157 (157)
T cd01858 105 VGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPGV 157 (157)
T ss_pred EEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEECcCC
Confidence 88999999999999999999888888999999998887777777999999995
No 19
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=4.7e-25 Score=212.81 Aligned_cols=180 Identities=14% Similarity=0.098 Sum_probs=140.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce-----eeecCeEEEEeCCCccCCCCcccHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT-----LIISEKLVLCDCPGLVFPSFSISRYDMV 298 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~-----~~~~~~i~l~d~pg~~~p~~~~~~~e~v 298 (509)
++++|++++|+||+|||||||||+|.|+.. .|.+.+.|....... ...+..++|++|...+.|.+ ++.+|+
T Consensus 27 ~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~l--tv~ENv 104 (226)
T COG1136 27 EIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDL--TVLENV 104 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCC--CHHHHH
Confidence 578999999999999999999999999987 788899996543211 12345799999999999999 666776
Q ss_pred HhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 299 ASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 299 ~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
...+...... .. .....+...+..++|.+....++|..|||||+|| ++|||||+.+|.++ ||++||..+.
T Consensus 105 ~lpl~~~~~~-~~-~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQR----VAIARAL~~~P~iilADEPTgnLD~~t~ 178 (226)
T COG1136 105 ELPLLIAGKS-AG-RRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQR----VAIARALINNPKIILADEPTGNLDSKTA 178 (226)
T ss_pred HhHHHHcCCC-hh-HHHHHHHHHHHhcCChhhhccCCchhcCHHHHHH----HHHHHHHhcCCCeEEeeCccccCChHHH
Confidence 6533211111 10 2334444555556687645557899999999999 99999999999998 9999999999
Q ss_pred -HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhccc
Q 010472 375 -AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLL 413 (509)
Q Consensus 375 -~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~ 413 (509)
.++.+|+++.+ .+.+++..+|+..-+.+|++...+.+|+
T Consensus 179 ~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 179 KEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGK 219 (226)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCe
Confidence 99999999975 4778888899999999988877766655
No 20
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=5.2e-25 Score=223.19 Aligned_cols=189 Identities=12% Similarity=0.144 Sum_probs=154.5
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++++|+++||+|+|||||||||++|+|+.. .|.+.+.|..........+..++|+.+...++|.++..++..++..++
T Consensus 27 ~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~ 106 (293)
T COG1131 27 EVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLY 106 (293)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHh
Confidence 478899999999999999999999999987 799999997765433445677999999888999997666656666665
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
.... ....+.+.+.+..++|.. +..+....||+||+|| +.||.||+.+|.++ ||+|||+..+ .+++
T Consensus 107 ~~~~----~~~~~~~~~~l~~~~L~~-~~~~~~~~lS~G~kqr----l~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~ 177 (293)
T COG1131 107 GLSK----EEAEERIEELLELFGLED-KANKKVRTLSGGMKQR----LSIALALLHDPELLILDEPTSGLDPESRREIWE 177 (293)
T ss_pred CCCh----hHHHHHHHHHHHHcCCch-hhCcchhhcCHHHHHH----HHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHH
Confidence 4322 122234455555556766 4466788999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 379 ILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 379 lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
+|+++++ |+.+++..+|.+.+.+.+|+.+.++..|+++..++.+.
T Consensus 178 ~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~ 223 (293)
T COG1131 178 LLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEE 223 (293)
T ss_pred HHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 9999987 55899999999999999888999999999988775543
No 21
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.91 E-value=1.2e-24 Score=221.48 Aligned_cols=201 Identities=15% Similarity=0.119 Sum_probs=161.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++..|++++|+|||||||||||++|+|+.. .|.+.+.|.....- ....+++++++|...+||.+ ++++|+.+++.
T Consensus 25 ~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l-~P~~R~iamVFQ~yALyPhm--tV~~Niaf~Lk 101 (338)
T COG3839 25 DIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDL-PPEKRGIAMVFQNYALYPHM--TVYENIAFGLK 101 (338)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC-ChhHCCEEEEeCCccccCCC--cHHHHhhhhhh
Confidence 467899999999999999999999999987 89999999775431 23456899999999999999 78999998875
Q ss_pred Ccchhh-hHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHH
Q 010472 304 PIDRMT-EHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AAR 377 (509)
Q Consensus 304 ~~~~~~-~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~ 377 (509)
...... +....+..+++.+ +|.+ +..+.|..|||||+|| ++|+|||+.+|.++ |.++||...| .++
T Consensus 102 ~~~~~k~ei~~rV~eva~~L---~l~~-lL~r~P~~LSGGQrQR----VAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr 173 (338)
T COG3839 102 LRGVPKAEIDKRVKEVAKLL---GLEH-LLNRKPLQLSGGQRQR----VALARALVRKPKVFLLDEPLSNLDAKLRVLMR 173 (338)
T ss_pred hCCCchHHHHHHHHHHHHHc---CChh-HHhcCcccCChhhHHH----HHHHHHHhcCCCEEEecCchhHhhHHHHHHHH
Confidence 432111 2233444444444 5777 7778899999999999 99999999999986 9999999999 999
Q ss_pred HHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCC-ccccCcCCCCCCCccHHHHhc
Q 010472 378 IILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS-DAEEVPAHGDRTTPVLEHVLD 442 (509)
Q Consensus 378 ~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 442 (509)
..|+.+.+ -+++.+..+|+-.++-..++.++++..|.|...+++ +.+...++ --+..+++
T Consensus 174 ~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n-----~fVA~FiG 235 (338)
T COG3839 174 SEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPAN-----LFVAGFIG 235 (338)
T ss_pred HHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccc-----hhhhhhcC
Confidence 99999865 578889999999999999999999999999885555 55555433 34455555
No 22
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=7.4e-25 Score=216.11 Aligned_cols=216 Identities=13% Similarity=0.111 Sum_probs=171.5
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccc-ccce-eeecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTK-HFQT-LIISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~-~~~~-~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
.++.|+.++++|||||||||||++|+|+.. .|.+.+.|.+. +... ....++++++.|...+||.+ ++.+|+.+|
T Consensus 24 ~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~Hm--tVa~NIAFG 101 (345)
T COG1118 24 DIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHM--TVADNIAFG 101 (345)
T ss_pred eecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccc--hHHhhhhhc
Confidence 467899999999999999999999999987 89999999742 1111 22346799999999999998 789999999
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
+.-........+....+.+.+..+.|+. +..++|..|||||+|| ++||||||..|.+| |+++||...| .+
T Consensus 102 l~~~~~~p~~~~~r~rv~elL~lvqL~~-la~ryP~QLSGGQrQR----VALARALA~eP~vLLLDEPf~ALDa~vr~~l 176 (345)
T COG1118 102 LKVRKERPSEAEIRARVEELLRLVQLEG-LADRYPAQLSGGQRQR----VALARALAVEPKVLLLDEPFGALDAKVRKEL 176 (345)
T ss_pred ccccccCCChhhHHHHHHHHHHHhcccc-hhhcCchhcChHHHHH----HHHHHHhhcCCCeEeecCCchhhhHHHHHHH
Confidence 7432111112233344444454455665 6668899999999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhcC-CccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhccCCCcccccc
Q 010472 377 RIILKDFIDG-KLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDDLSSFDLANG 452 (509)
Q Consensus 377 ~~lLkd~~~g-kl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (509)
+..|+++.+. ++..+..+|+..++...++.+++|+.|+|...++.+....... .+.+-.+++..+.++....
T Consensus 177 r~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~----s~fV~~f~G~~n~~~~~v~ 249 (345)
T COG1118 177 RRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPA----SRFVARFLGEVNVLPGEVI 249 (345)
T ss_pred HHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCC----ccceecccccceeccceee
Confidence 9999999876 8888999999999999999999999999998777765544322 2677888888877765333
No 23
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.91 E-value=9.7e-25 Score=200.60 Aligned_cols=191 Identities=13% Similarity=0.129 Sum_probs=159.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
.++.|++++|+||+|+|||||+|.|+|... .|.+.+.|..... .....+-+.+++|...+|..+ ++..|+-.|+.
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~-~~P~~RPVSmlFQEnNLFaHL--tV~qNigLGl~ 97 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTA-SPPAERPVSMLFQENNLFAHL--TVAQNIGLGLS 97 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCc-CCcccCChhhhhhccccchhh--hhhhhhcccCC
Confidence 478899999999999999999999999987 8999999976432 223445678889999999988 77889999998
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
|.-.... ...+.+.....+++|.. |..++|.+|||||+|| ++|||+|++...++ |++.|||.-| .+..
T Consensus 98 P~LkL~a--~~r~~v~~aa~~vGl~~-~~~RLP~~LSGGqRQR----vALARclvR~~PilLLDEPFsALdP~LR~eMl~ 170 (231)
T COG3840 98 PGLKLNA--EQREKVEAAAAQVGLAG-FLKRLPGELSGGQRQR----VALARCLVREQPILLLDEPFSALDPALRAEMLA 170 (231)
T ss_pred cccccCH--HHHHHHHHHHHHhChhh-HhhhCccccCchHHHH----HHHHHHHhccCCeEEecCchhhcCHHHHHHHHH
Confidence 8654432 22333444444566877 7889999999999999 99999999999987 9999999999 9999
Q ss_pred HHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccC
Q 010472 379 ILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEV 426 (509)
Q Consensus 379 lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (509)
++.++.. .+++++..+|..+++....+.+++++.|+|++.++.+.-..
T Consensus 171 Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~ 219 (231)
T COG3840 171 LVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS 219 (231)
T ss_pred HHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence 9999865 67899999999999999999999999999999888765544
No 24
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.7e-24 Score=206.82 Aligned_cols=192 Identities=14% Similarity=0.062 Sum_probs=156.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc----ceeeecCeEEEEeCCCccCCCCcccHHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF----QTLIISEKLVLCDCPGLVFPSFSISRYDMVA 299 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~----~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~ 299 (509)
.+++|++++|||++||||||||++|.|+.. .|.+.+.|..... ....++.++++++|...+.|.+ ++++|++
T Consensus 26 ~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~--sv~~NVl 103 (258)
T COG3638 26 EINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRL--SVLENVL 103 (258)
T ss_pred EeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCccccc--HHHHHHH
Confidence 478999999999999999999999999877 7888888854321 2234567899999988888887 7888999
Q ss_pred hccCCcchhh------hHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCC
Q 010472 300 SGVLPIDRMT------EHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGL 369 (509)
Q Consensus 300 ~g~~~~~~~~------~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGL 369 (509)
.|.+...... -..+....+.+.++++++.+ +.......|||||+|| ++|||||+++|+++ |+++|
T Consensus 104 ~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~-~A~qra~~LSGGQQQR----VaIARaL~Q~pkiILADEPvasL 178 (258)
T COG3638 104 LGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILD-KAYQRASTLSGGQQQR----VAIARALVQQPKIILADEPVASL 178 (258)
T ss_pred hhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHH-HHHHHhccCCcchhHH----HHHHHHHhcCCCEEecCCccccc
Confidence 8877543211 11344556677778888888 7778889999999999 99999999999998 99999
Q ss_pred CHHHH-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 370 PDETR-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 370 D~~~r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
||.+. .++++|+++.+ .+++++..-|.++-+...++++..+..|+++.++++...
T Consensus 179 Dp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el 235 (258)
T COG3638 179 DPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL 235 (258)
T ss_pred ChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhh
Confidence 99999 99999999975 568888888999998888888888889999988887653
No 25
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.90 E-value=9.1e-24 Score=195.54 Aligned_cols=187 Identities=14% Similarity=0.118 Sum_probs=157.8
Q ss_pred ccCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc----ceeeecCeEEEEeCCCccCCCCcccHHHHH
Q 010472 225 NVAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF----QTLIISEKLVLCDCPGLVFPSFSISRYDMV 298 (509)
Q Consensus 225 ~~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~----~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v 298 (509)
-++++|+++.|+||+||||||||++|++..+ .|.+.+.|..... +...+++++++++|..-+.++. ++++|+
T Consensus 23 ~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~--tvyeNV 100 (223)
T COG2884 23 FHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDR--TVYENV 100 (223)
T ss_pred EeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccc--hHhhhh
Confidence 3578999999999999999999999999887 7999999976432 2334678899999988888877 788898
Q ss_pred HhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 299 ASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 299 ~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
++.+.-+.. ...+....+.+.++.++|.+ ....+|..||||+||| ++||||++.+|.+| ||++|||...
T Consensus 101 A~pL~v~G~--~~~~i~~rV~~~L~~VgL~~-k~~~lP~~LSGGEQQR----vaIARAiV~~P~vLlADEPTGNLDp~~s 173 (223)
T COG2884 101 ALPLRVIGK--PPREIRRRVSEVLDLVGLKH-KARALPSQLSGGEQQR----VAIARAIVNQPAVLLADEPTGNLDPDLS 173 (223)
T ss_pred hhhhhccCC--CHHHHHHHHHHHHHHhccch-hhhcCccccCchHHHH----HHHHHHHccCCCeEeecCCCCCCChHHH
Confidence 876543322 23355566777777888887 6678899999999999 99999999999998 9999999998
Q ss_pred -HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCC
Q 010472 375 -AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDA 420 (509)
Q Consensus 375 -~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (509)
.++.++.++..-+++++..+|+..-...+...++.++.|+++.++.
T Consensus 174 ~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 174 WEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 9999999999988999999999999889999999999999987654
No 26
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.90 E-value=8e-23 Score=191.60 Aligned_cols=172 Identities=31% Similarity=0.489 Sum_probs=120.6
Q ss_pred CEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCeEEEeehhhhHHhhhccccc
Q 010472 83 DLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWSAKAASAALEGKAVS 162 (509)
Q Consensus 83 DvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~gi~~if~Sa~~~~~~~~g~~l~ 162 (509)
|+|++|+|||+|+.++++.+.+++.....+||+|+|+||+||++++.+..|.+||.+....+.|.|+.... ...+.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 76 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQ----KKNLG 76 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEeccccc----ccchh
Confidence 89999999999999999999888532234799999999999999999999999999887777776653211 00000
Q ss_pred ccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccccccCccCCCCcEEEEEecCCCC
Q 010472 163 DTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVDESFAGNVAPKNVIVGFVGYPNVG 242 (509)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~vglvG~nGaG 242 (509)
.........+.........++.+.|++.++..... ........++++|.||+|
T Consensus 77 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~---------------------------~~~~~~~~~~~vG~pnvG 129 (172)
T cd04178 77 QKSVKVEAASADLLRSSVCFGADCLLKLLKNYSRN---------------------------KDIKTSITVGVVGFPNVG 129 (172)
T ss_pred hcccccchhhhhhhhhccccCHHHHHHHHHHHhhc---------------------------cccccCcEEEEEcCCCCC
Confidence 00000000000111122345556665555432110 011234689999999999
Q ss_pred HhHHHHHHhcCCcceEEeeCCcccccceeeecCeEEEEeCCCc
Q 010472 243 KSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGL 285 (509)
Q Consensus 243 KSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~ 285 (509)
||||||+|.|.....++..+|+|++.+...+...+.++|+||+
T Consensus 130 KSslin~l~~~~~~~~~~~pg~T~~~~~~~~~~~~~l~DtPGi 172 (172)
T cd04178 130 KSSLINSLKRSRACNVGATPGVTKSMQEVHLDKKVKLLDSPGI 172 (172)
T ss_pred HHHHHHHHhCcccceecCCCCeEcceEEEEeCCCEEEEECcCC
Confidence 9999999999887888899999999888887778999999995
No 27
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.90 E-value=6.5e-24 Score=216.65 Aligned_cols=187 Identities=16% Similarity=0.108 Sum_probs=144.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHH--hc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVA--SG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~--~g 301 (509)
++++|+++||+||||||||||+++|+|+.. .|.+.+.|..........+..++|+++...+|+.++ +.+++. ..
T Consensus 29 ~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t--v~e~l~~~~~ 106 (306)
T PRK13537 29 HVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFT--VRENLLVFGR 106 (306)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCc--HHHHHHHHHH
Confidence 467899999999999999999999999976 799999997653322234567999998877777774 455543 22
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
.+... ..+....+.+.+..++|.. +..+.+..||+||+|| ++||+||+++|.++ ||+|||+.++ .+
T Consensus 107 ~~~~~----~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----l~la~aL~~~P~lllLDEPt~gLD~~~~~~l 177 (306)
T PRK13537 107 YFGLS----AAAARALVPPLLEFAKLEN-KADAKVGELSGGMKRR----LTLARALVNDPDVLVLDEPTTGLDPQARHLM 177 (306)
T ss_pred HcCCC----HHHHHHHHHHHHHHcCCch-HhcCchhhCCHHHHHH----HHHHHHHhCCCCEEEEeCCCcCCCHHHHHHH
Confidence 22111 1112223344444555665 5567788999999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 377 RIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 377 ~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
+.+|+++.+.+.+++..+|.+.+.+.+|+.++++..|+++..++.+.
T Consensus 178 ~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~ 224 (306)
T PRK13537 178 WERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHA 224 (306)
T ss_pred HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999997666789999999999988888888888888887665543
No 28
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.89 E-value=8.5e-24 Score=218.50 Aligned_cols=205 Identities=16% Similarity=0.109 Sum_probs=157.5
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce----eeecCeEEEEeCCCccCCCCcccHHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT----LIISEKLVLCDCPGLVFPSFSISRYDMVA 299 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~----~~~~~~i~l~d~pg~~~p~~~~~~~e~v~ 299 (509)
++.+|+++||+|+||||||||+++|+|+.+ .|.+.+.|....... ...+..+++++|...+++.. ++.+++.
T Consensus 27 ~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~--tv~eni~ 104 (343)
T TIGR02314 27 HVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSR--TVFGNVA 104 (343)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccC--cHHHHHH
Confidence 478999999999999999999999999987 799999997543211 12356799999988888776 5677776
Q ss_pred hccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-
Q 010472 300 SGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR- 374 (509)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r- 374 (509)
.+.... .. ........+.+.+..++|.+ +...++..|||||+|| +.|||||+.+|.+| ||++||+.++
T Consensus 105 ~~~~~~-~~-~~~~~~~~v~e~l~~vgL~~-~~~~~~~~LSgGqkQR----V~IARAL~~~P~iLLlDEPts~LD~~t~~ 177 (343)
T TIGR02314 105 LPLELD-NT-PKDEIKRKVTELLALVGLGD-KHDSYPSNLSGGQKQR----VAIARALASNPKVLLCDEATSALDPATTQ 177 (343)
T ss_pred HHHHHc-CC-CHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHH----HHHHHHHHhCCCEEEEeCCcccCCHHHHH
Confidence 543211 11 11123334555566667776 6678899999999999 99999999999998 9999999999
Q ss_pred HHHHHHHHhhcC-CccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhcc
Q 010472 375 AARIILKDFIDG-KLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDD 443 (509)
Q Consensus 375 ~~~~lLkd~~~g-kl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (509)
.++.+|+++.+. +++++..+|++.....+|+.+++++.|++++.++.+....... .+..++++..
T Consensus 178 ~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p~----~~~~~~~~~~ 243 (343)
T TIGR02314 178 SILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPK----TPLAQKFIRS 243 (343)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCC----cHHHHHHHhh
Confidence 999999999763 6788889999999988888999999999998877765544322 2445566553
No 29
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=1.8e-24 Score=201.60 Aligned_cols=194 Identities=12% Similarity=0.086 Sum_probs=149.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccccee--eecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTL--IISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~--~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
.+.+|++||++|||||||||.+++++|+.+ +|.+.+.|........ +.+..++|++|...+|-.+ ++.+|+.+-
T Consensus 26 ~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~L--tV~dNi~~v 103 (243)
T COG1137 26 EVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKL--TVEDNIMAV 103 (243)
T ss_pred EEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcC--cHHHHHHHH
Confidence 478999999999999999999999999987 8999999876544333 3345789999999999998 556665543
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
+--........+....+.+.++.+.+.+ ........||||+++| ++||||||.+|.++ |++|+||.+- .+
T Consensus 104 lE~~~~d~~~~~~~~~l~~LL~ef~i~h-lr~~~a~sLSGGERRR----~EIARaLa~~P~fiLLDEPFAGVDPiaV~dI 178 (243)
T COG1137 104 LEIREKDLKKAERKEELDALLEEFHITH-LRDSKAYSLSGGERRR----VEIARALAANPKFILLDEPFAGVDPIAVIDI 178 (243)
T ss_pred HhhhhcchhHHHHHHHHHHHHHHhchHH-HhcCcccccccchHHH----HHHHHHHhcCCCEEEecCCccCCCchhHHHH
Confidence 3221111111223334556666677877 6778888999999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccC
Q 010472 377 RIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEV 426 (509)
Q Consensus 377 ~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (509)
..+++.+++.+++++.++|+..+.=-.+++.-+...|.+...+.++..-+
T Consensus 179 q~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 179 QRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred HHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 99999999999999999999988776666666655555555444444433
No 30
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.89 E-value=6.8e-24 Score=197.96 Aligned_cols=206 Identities=12% Similarity=0.059 Sum_probs=156.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
.+..|+++||+|+|||||||+|++|++++. .|.+.+.|..........++.++++...--+|-.++..++..++..++
T Consensus 24 ~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~ 103 (245)
T COG4555 24 EAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN 103 (245)
T ss_pred EeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh
Confidence 457899999999999999999999999987 899999998766666566777777664434456664433333332222
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
... ..+....+.+....++|.+ |.++....+|-|++|| +.|||||+++|.++ |++|||..++ .+.+
T Consensus 104 ~l~----~~~~kari~~l~k~l~l~~-~~~rRv~~~S~G~kqk----V~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~d 174 (245)
T COG4555 104 GLS----RKEIKARIAELSKRLQLLE-YLDRRVGEFSTGMKQK----VAIARALVHDPSILVLDEPTSGLDIRTRRKFHD 174 (245)
T ss_pred hhh----hhHHHHHHHHHHHHhChHH-HHHHHHhhhchhhHHH----HHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHH
Confidence 211 1233445566666667887 7888889999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhccC
Q 010472 379 ILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDDL 444 (509)
Q Consensus 379 lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (509)
+|+.+++.+..+++..|.|.+.+..||.+.++..|.++..++-+....... ..++|++|-..
T Consensus 175 fi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~~----~~~le~~f~~~ 236 (245)
T COG4555 175 FIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTV----LRNLEEIFAFA 236 (245)
T ss_pred HHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHHh----hcCHHHHHHHh
Confidence 999999866666777899999998888888888888887776655554333 26777777543
No 31
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.89 E-value=1.9e-23 Score=216.00 Aligned_cols=188 Identities=13% Similarity=0.077 Sum_probs=144.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHH--hc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVA--SG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~--~g 301 (509)
++.+|+++||+|+|||||||||++|+|+.. .|.+.+.|..........+..++|+++...+++.++ ..+++. ..
T Consensus 63 ~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t--v~e~l~~~~~ 140 (340)
T PRK13536 63 TVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFT--VRENLLVFGR 140 (340)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCc--HHHHHHHHHH
Confidence 578999999999999999999999999986 899999997643222234567999999877777774 445443 22
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
.+... .......+.+.+..++|.+ +....+..||+||+|| +.||+||+.+|.++ ||+|||+.++ .+
T Consensus 141 ~~~~~----~~~~~~~~~~ll~~~~L~~-~~~~~~~~LS~G~kqr----v~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l 211 (340)
T PRK13536 141 YFGMS----TREIEAVIPSLLEFARLES-KADARVSDLSGGMKRR----LTLARALINDPQLLILDEPTTGLDPHARHLI 211 (340)
T ss_pred HcCCC----HHHHHHHHHHHHHHcCCch-hhCCChhhCCHHHHHH----HHHHHHHhcCCCEEEEECCCCCCCHHHHHHH
Confidence 22211 1111222333444455665 5567788999999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 377 RIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 377 ~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
+++|+++.+.+.+++..+|.+++.+.+|+.++++..|+++..++.+..
T Consensus 212 ~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l 259 (340)
T PRK13536 212 WERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHAL 259 (340)
T ss_pred HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999977667889999999999888888888888888876655443
No 32
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.89 E-value=3e-23 Score=221.00 Aligned_cols=213 Identities=15% Similarity=0.090 Sum_probs=169.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce-----eeecCeEEEEeCCCccCCCCcccHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT-----LIISEKLVLCDCPGLVFPSFSISRYDMV 298 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~-----~~~~~~i~l~d~pg~~~p~~~~~~~e~v 298 (509)
.+.+|+++||||.+|||||||.++|+|+.. .|.+.+.|....... .....++.|.|....+.|.+ ++.+.+
T Consensus 313 ~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~--tV~~~i 390 (539)
T COG1123 313 DLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRM--TVGDIL 390 (539)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccc--cHHHHH
Confidence 578999999999999999999999999987 788999886521111 11223466666667777777 555554
Q ss_pred HhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 299 ASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 299 ~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
...+.-.... ...+..+.+.+.+...+|...+..++|++|||||+|| ++|||||+.+|+++ |++.||+..+
T Consensus 391 ~epL~~~~~~-~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQR----vaIARALa~~P~lli~DEp~SaLDvsvq 465 (539)
T COG1123 391 AEPLRIHGGG-SGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQR----VAIARALALEPKLLILDEPVSALDVSVQ 465 (539)
T ss_pred HhHHhhhccc-chHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHH----HHHHHHHhcCCCEEEecCCccccCHHHH
Confidence 4433211111 1123334566667777787668889999999999999 99999999999998 9999999999
Q ss_pred -HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhccCCCccc
Q 010472 375 -AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDDLSSFDL 449 (509)
Q Consensus 375 -~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (509)
.+.++|+++++ -++.|++..|++.-.++.|+++++|+.|+|++.++++..++...+ |+.+.++.+.+..|.
T Consensus 466 a~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h----~Ytr~L~~avp~~~~ 538 (539)
T COG1123 466 AQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQH----PYTRKLLAAVPKPDP 538 (539)
T ss_pred HHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCC----hHHHHHHHhccccCC
Confidence 99999999976 589999999999999999999999999999999999999987664 888888888776553
No 33
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.89 E-value=1.7e-23 Score=213.18 Aligned_cols=186 Identities=11% Similarity=0.099 Sum_probs=142.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhc--
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASG-- 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g-- 301 (509)
++.+|+++||+|+||||||||+++|+|+.+ .|.+.+.|..........+..++|+.|...+++.+ ++.+++...
T Consensus 15 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~--tv~e~l~~~~~ 92 (302)
T TIGR01188 15 KVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL--TGRENLEMMGR 92 (302)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC--cHHHHHHHHHH
Confidence 478999999999999999999999999976 79999999754322222345688998877777777 445554332
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
.+.. ........+.+.+..++|.. +....+..||+||+|| +.||+||+.+|.+| ||+|||+.++ .+
T Consensus 93 ~~~~----~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qr----v~la~al~~~p~lllLDEPt~gLD~~~~~~l 163 (302)
T TIGR01188 93 LYGL----PKDEAEERAEELLELFELGE-AADRPVGTYSGGMRRR----LDIAASLIHQPDVLFLDEPTTGLDPRTRRAI 163 (302)
T ss_pred HcCC----CHHHHHHHHHHHHHHcCChh-HhCCchhhCCHHHHHH----HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 1111 11112223444555556765 5667788999999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 377 RIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 377 ~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
+.+|+.+.+.+.+++..+|++...+.+|+.++++..|+++..++.+
T Consensus 164 ~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 209 (302)
T TIGR01188 164 WDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPE 209 (302)
T ss_pred HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999765677888999999988888888888889988765543
No 34
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=2.6e-23 Score=216.20 Aligned_cols=204 Identities=13% Similarity=0.090 Sum_probs=157.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+|||||||||++|+|+.+ .|.+.+.|....... .....++|++|...+||.+ ++.+++.++..
T Consensus 26 ~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~-~~~r~ig~v~Q~~~lfp~~--tv~eNi~~~~~ 102 (356)
T PRK11650 26 DVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELE-PADRDIAMVFQNYALYPHM--SVRENMAYGLK 102 (356)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-HHHCCEEEEeCCccccCCC--CHHHHHHhHHh
Confidence 467899999999999999999999999987 799999997653211 1235799999998999988 66778876643
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
... . ...+....+.+.+..++|.+ +..+.+..|||||+|| ++|||||+.+|.+| |+++||...+ .++.
T Consensus 103 ~~~-~-~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~QR----valARAL~~~P~llLLDEP~s~LD~~~r~~l~~ 175 (356)
T PRK11650 103 IRG-M-PKAEIEERVAEAARILELEP-LLDRKPRELSGGQRQR----VAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRL 175 (356)
T ss_pred hcC-C-CHHHHHHHHHHHHHHcCChh-HhhCChhhCCHHHHHH----HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 111 1 11122234455555566776 7778899999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhcC-CccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhcc
Q 010472 379 ILKDFIDG-KLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDD 443 (509)
Q Consensus 379 lLkd~~~g-kl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (509)
.|+.+.+. +++++..+|+..++...++.+++++.|+++..++.+...+... .+....+++.
T Consensus 176 ~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~----~~~~~~~~g~ 237 (356)
T PRK11650 176 EIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPA----STFVASFIGS 237 (356)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCc----cHHHHHHcCC
Confidence 99998763 6788999999999888888999999999988776654433211 2345555554
No 35
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=9.7e-24 Score=202.97 Aligned_cols=194 Identities=17% Similarity=0.159 Sum_probs=152.6
Q ss_pred ccCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce--eeecCeEEEEeCCCccCCCCcccHHHHHHh
Q 010472 225 NVAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT--LIISEKLVLCDCPGLVFPSFSISRYDMVAS 300 (509)
Q Consensus 225 ~~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~--~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~ 300 (509)
-++.+|+++|||||||||||||+|+|+|.++ .|.+.+.|.+...-. ...+..+..-+|..-+||.+ ++.+|++.
T Consensus 25 l~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~l--TVlENv~v 102 (250)
T COG0411 25 LEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGL--TVLENVAV 102 (250)
T ss_pred EEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCC--cHHHHHHH
Confidence 3578999999999999999999999999988 799999997654322 12244566667777788888 67778777
Q ss_pred ccCCcc----------hhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eC
Q 010472 301 GVLPID----------RMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----AS 366 (509)
Q Consensus 301 g~~~~~----------~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----Pt 366 (509)
+..... ......+..+.+.+.++.++|.+ +.+.....||||++++ ++||+|||.+|++| |.
T Consensus 103 a~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~-~a~~~A~~LsyG~qR~----LEIArALa~~P~lLLLDEPa 177 (250)
T COG0411 103 GAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGE-LADRPAGNLSYGQQRR----LEIARALATQPKLLLLDEPA 177 (250)
T ss_pred HhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCch-hhcchhhcCChhHhHH----HHHHHHHhcCCCEEEecCcc
Confidence 643210 01133456677788888888988 7788899999999999 99999999999998 99
Q ss_pred CCCCHHHH-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCcccc
Q 010472 367 SGLPDETR-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEE 425 (509)
Q Consensus 367 sGLD~~~r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (509)
+|+.+... .+..+|+++++ +++.++..-|+|+-.--.|+++.++..|+++..++.+...
T Consensus 178 AGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~ 238 (250)
T COG0411 178 AGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVR 238 (250)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHh
Confidence 99999999 99999999987 6799999999999987777777776666654444444443
No 36
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.89 E-value=2.6e-23 Score=214.24 Aligned_cols=213 Identities=13% Similarity=0.064 Sum_probs=160.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc----eeeecCeEEEEeCCC--ccCCCCcccHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ----TLIISEKLVLCDCPG--LVFPSFSISRYDM 297 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~----~~~~~~~i~l~d~pg--~~~p~~~~~~~e~ 297 (509)
++.+|+++||+|+||||||||+++|+|+.. .|.+.+.|...... ...++..++|+.|.. .++|.+ +..++
T Consensus 43 ~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~--tv~~~ 120 (331)
T PRK15079 43 RLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRM--TIGEI 120 (331)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCC--CHHHH
Confidence 478999999999999999999999999986 79999999764321 112345688988864 467766 55666
Q ss_pred HHhccCCcc-hhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHH
Q 010472 298 VASGVLPID-RMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDE 372 (509)
Q Consensus 298 v~~g~~~~~-~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~ 372 (509)
+..++.... .. ...+....+.+.+..++|...+....+..|||||+|| +.||+||+.+|.+| ||+|||..
T Consensus 121 i~~~l~~~~~~~-~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QR----v~iArAL~~~P~llilDEPts~LD~~ 195 (331)
T PRK15079 121 IAEPLRTYHPKL-SRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQR----IGIARALILEPKLIICDEPVSALDVS 195 (331)
T ss_pred HHHHHHHhccCC-CHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHH----HHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 554321110 01 1112233344455555664335678899999999999 99999999999998 99999999
Q ss_pred HH-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhccCCCccc
Q 010472 373 TR-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDDLSSFDL 449 (509)
Q Consensus 373 ~r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (509)
.+ .+..+|+++.+ .++.++..+|++..+..+++.+++++.|++++.++.+....... .|..+.++..++.++.
T Consensus 196 ~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~i~~~~~----~py~~~l~~~~~~~~~ 270 (331)
T PRK15079 196 IQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPL----HPYTKALMSAVPIPDP 270 (331)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCC----CHHHHHHHhhCCCccc
Confidence 99 99999999976 36889999999999998888889999999999877765544322 3788888988876653
No 37
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=3.3e-23 Score=214.93 Aligned_cols=208 Identities=13% Similarity=0.149 Sum_probs=159.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|....... ...+.+++++|...+||.+ ++.+++.+++.
T Consensus 28 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-~~~r~ig~vfQ~~~lfp~~--tv~eNi~~~l~ 104 (351)
T PRK11432 28 TIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRS-IQQRDICMVFQSYALFPHM--SLGENVGYGLK 104 (351)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-HHHCCEEEEeCCcccCCCC--CHHHHHHHHHh
Confidence 467899999999999999999999999987 799999997653211 2245799999988899988 66788877643
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
... . ...+..+.+.+.+..++|.. +..+.+..|||||+|| ++|||||+.+|++| |++|||...+ .++.
T Consensus 105 ~~~-~-~~~~~~~~v~~~l~~~gl~~-~~~r~~~~LSgGq~QR----VaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~ 177 (351)
T PRK11432 105 MLG-V-PKEERKQRVKEALELVDLAG-FEDRYVDQISGGQQQR----VALARALILKPKVLLFDEPLSNLDANLRRSMRE 177 (351)
T ss_pred HcC-C-CHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHH----HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 111 1 11122334444455555666 6678899999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhccCCCc
Q 010472 379 ILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDDLSSF 447 (509)
Q Consensus 379 lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (509)
.|+.+.+ .+++++..+|+..++..+++.+++++.|+++..++.+....... .+.+.++++...-|
T Consensus 178 ~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~----~~~~a~~~g~~n~~ 243 (351)
T PRK11432 178 KIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA----SRFMASFMGDANIF 243 (351)
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC----chHHHHhcCCceeE
Confidence 9999865 46788999999999988889999999999988776654433211 24567777754433
No 38
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=5.8e-23 Score=196.20 Aligned_cols=193 Identities=13% Similarity=0.112 Sum_probs=159.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc--eeeecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ--TLIISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~--~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
++++|++++|+|+|||||||||++|+|+.+ .|.+.+.|...... ....+..++|+++---+||.+ ++.+|+..|
T Consensus 25 ~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~L--TVeENL~~g 102 (237)
T COG0410 25 EVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRL--TVEENLLLG 102 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhC--cHHHHHhhh
Confidence 467899999999999999999999999988 79999999775432 234467899999999999999 788898888
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
.+............+.+.+++++ |.+ ...+....||||+||. ++|+|||+.+|++| |+.||-|.-. .+
T Consensus 103 ~~~~~~~~~~~~~~e~v~~lFP~--Lke-r~~~~aG~LSGGEQQM----LAiaRALm~~PklLLLDEPs~GLaP~iv~~I 175 (237)
T COG0410 103 AYARRDKEAQERDLEEVYELFPR--LKE-RRNQRAGTLSGGEQQM----LAIARALMSRPKLLLLDEPSEGLAPKIVEEI 175 (237)
T ss_pred hhcccccccccccHHHHHHHChh--HHH-HhcCcccCCChHHHHH----HHHHHHHhcCCCEEEecCCccCcCHHHHHHH
Confidence 76543211111226678888885 555 6677889999999999 99999999999998 9999998888 99
Q ss_pred HHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCc
Q 010472 377 RIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVP 427 (509)
Q Consensus 377 ~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (509)
...|+++++ +.+.++-.--+...+-..+|+.-+++.|+++..++.+....+
T Consensus 176 ~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 176 FEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred HHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 999999984 568888888888888889999999999999998887666543
No 39
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.88 E-value=3.7e-23 Score=214.82 Aligned_cols=208 Identities=15% Similarity=0.160 Sum_probs=159.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|||||||||||++|+|+.. .|.+.+.|....... ...+.++|++|...+||.+ ++.+++.+++.
T Consensus 26 ~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~-~~~r~ig~v~Q~~~lfp~~--tv~eNi~~~~~ 102 (353)
T TIGR03265 26 SVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLP-PQKRDYGIVFQSYALFPNL--TVADNIAYGLK 102 (353)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC-HHHCCEEEEeCCcccCCCC--cHHHHHHHHHH
Confidence 467899999999999999999999999987 799999997653211 2245799999999999988 66778876643
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
... . ...+....+.+.+..++|.. +..+.+..|||||+|| ++|||||+.+|+++ |+++||...+ .++.
T Consensus 103 ~~~-~-~~~~~~~~~~~~l~~l~L~~-~~~~~~~~LSgGq~QR----vaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~ 175 (353)
T TIGR03265 103 NRG-M-GRAEVAERVAELLDLVGLPG-SERKYPGQLSGGQQQR----VALARALATSPGLLLLDEPLSALDARVREHLRT 175 (353)
T ss_pred hcC-C-CHHHHHHHHHHHHHHcCCCc-hhhCChhhCCHHHHHH----HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 211 1 11122334455555566766 6678899999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhccCCCc
Q 010472 379 ILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDDLSSF 447 (509)
Q Consensus 379 lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (509)
.|+.+.+ .+++++..+|+..++...++.++++..|+++..++.+...+... .+.+..+++...-|
T Consensus 176 ~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~----~~~~a~~~g~~n~~ 241 (353)
T TIGR03265 176 EIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPA----TPFVADFVGEVNWL 241 (353)
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC----CHHHHHhcCCCcEE
Confidence 9999865 47788888999999988888999999999988776654433211 23455566654433
No 40
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.88 E-value=4.5e-23 Score=216.98 Aligned_cols=204 Identities=13% Similarity=0.121 Sum_probs=153.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
.+.+|++++|+|||||||||||++|+|+.+ .|.+.+.|..... ....+...++++.|...+++.+ ++.+++..+.
T Consensus 25 ~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~--tv~e~v~~~~ 102 (402)
T PRK09536 25 SVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF--DVRQVVEMGR 102 (402)
T ss_pred EECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCC--CHHHHHHhcc
Confidence 468999999999999999999999999976 8999999976432 1123355788998877776666 6677777665
Q ss_pred CCcc-hhh-hHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-H
Q 010472 303 LPID-RMT-EHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-A 375 (509)
Q Consensus 303 ~~~~-~~~-~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~ 375 (509)
++.. .+. ........+.+.+..+++.+ +..+.+..||+||+|| +.||+||+++|.+| ||+|||+.++ .
T Consensus 103 ~~~~~~~~~~~~~~~~~v~~~le~vgl~~-~~~~~~~~LSgGerQR----v~IArAL~~~P~iLLLDEPtsgLD~~~~~~ 177 (402)
T PRK09536 103 TPHRSRFDTWTETDRAAVERAMERTGVAQ-FADRPVTSLSGGERQR----VLLARALAQATPVLLLDEPTASLDINHQVR 177 (402)
T ss_pred chhcccccCCCHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHH----HHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence 4321 111 01112233444455555665 5567788999999999 99999999999998 9999999999 9
Q ss_pred HHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhcc
Q 010472 376 ARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDD 443 (509)
Q Consensus 376 ~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (509)
++.+|+++.+.+..++...|+++....+++.+.++..|+++..++.+..-. .+.++++|+.
T Consensus 178 l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~-------~~~l~~~~~~ 238 (402)
T PRK09536 178 TLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT-------ADTLRAAFDA 238 (402)
T ss_pred HHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC-------cHHHHHHhCC
Confidence 999999997655678888999999988778888888888887665543322 2677888863
No 41
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=6.8e-23 Score=200.63 Aligned_cols=187 Identities=16% Similarity=0.074 Sum_probs=151.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccc--cceeeecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKH--FQTLIISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~--~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
.+.+|+.++|+|+||||||||+++|.|+.. .|.+.+.|.... .....+++.++++.|.+-. +-+..++.+.+.+|
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~-q~~~~tV~~evafg 104 (235)
T COG1122 26 EIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDD-QLFGPTVEDEVAFG 104 (235)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECccc-ccccCcHHHHHhhc
Confidence 477899999999999999999999999988 688888887643 2233456778888875432 22455788888888
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
........ .+...++.+.+..+++.+ +..+.|..|||||+|| ++||.+||.+|.++ ||+|||+..+ .+
T Consensus 105 ~~n~g~~~--~e~~~rv~~~l~~vgl~~-~~~r~p~~LSGGqkqR----vaIA~vLa~~P~iliLDEPta~LD~~~~~~l 177 (235)
T COG1122 105 LENLGLPR--EEIEERVAEALELVGLEE-LLDRPPFNLSGGQKQR----VAIAGVLAMGPEILLLDEPTAGLDPKGRREL 177 (235)
T ss_pred hhhcCCCH--HHHHHHHHHHHHHcCchh-hccCCccccCCcceee----HHhhHHHHcCCCEEEEcCCCCCCCHHHHHHH
Confidence 76543222 234555666666667877 6788999999999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCC
Q 010472 377 RIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDA 420 (509)
Q Consensus 377 ~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (509)
..+|+++.. ++..++..+|+++.....++.+.+++.|+++..++
T Consensus 178 ~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~ 222 (235)
T COG1122 178 LELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGD 222 (235)
T ss_pred HHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCC
Confidence 999999976 57999999999999999888888888888866555
No 42
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.88 E-value=4.8e-23 Score=214.47 Aligned_cols=190 Identities=16% Similarity=0.146 Sum_probs=150.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--c--eEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--T--GVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~--g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
++..|++++|+|+|||||||||++|+|+.. . |.+.+.|....... ...+.++++.|...+||.+ ++.+++.++
T Consensus 27 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~-~~~r~ig~vfQ~~~l~p~~--tv~enl~~~ 103 (362)
T TIGR03258 27 EIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP-PHKRGLALLFQNYALFPHL--KVEDNVAFG 103 (362)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCC-HHHCCEEEEECCcccCCCC--cHHHHHHHH
Confidence 467899999999999999999999999987 6 99999997643211 1245789999988889988 567777765
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
+.... . ........+.+.+..++|.+ +..+.+..|||||+|| ++|||||+.+|.+| |++|||...+ .+
T Consensus 104 l~~~~-~-~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSgGq~QR----vaLARAL~~~P~llLLDEP~s~LD~~~r~~l 176 (362)
T TIGR03258 104 LRAQK-M-PKADIAERVADALKLVGLGD-AAAHLPAQLSGGMQQR----IAIARAIAIEPDVLLLDEPLSALDANIRANM 176 (362)
T ss_pred HHHcC-C-CHHHHHHHHHHHHHhcCCCc-hhhCChhhCCHHHHHH----HHHHHHHhcCCCEEEEcCccccCCHHHHHHH
Confidence 43211 1 11122334555555566766 6678899999999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhcC--CccEEEcCCCCChhhccchhhHhhcccccccCCCCcccc
Q 010472 377 RIILKDFIDG--KLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEE 425 (509)
Q Consensus 377 ~~lLkd~~~g--kl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (509)
+.+|+++.+. +++++..+|++.++...++.+++++.|+++..++.+...
T Consensus 177 ~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 177 REEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999998764 678899999999998888899999999998877665443
No 43
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.88 E-value=5.6e-23 Score=213.48 Aligned_cols=210 Identities=13% Similarity=0.139 Sum_probs=159.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|....... ...+.++|+.|...+||.+ ++.+++..+..
T Consensus 24 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~-~~~r~i~~v~Q~~~l~p~~--tv~eni~~~~~ 100 (353)
T PRK10851 24 DIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH-ARDRKVGFVFQHYALFRHM--TVFDNIAFGLT 100 (353)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC-HHHCCEEEEecCcccCCCC--cHHHHHHhhhh
Confidence 467899999999999999999999999986 799999997653211 2235789999988888887 56777776543
Q ss_pred Ccc--hhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 304 PID--RMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 304 ~~~--~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
... ...........+.+.+..++|.+ +..+.+..|||||+|| ++|||||+.+|.++ |++|||...+ .+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGq~QR----valArAL~~~P~llLLDEP~s~LD~~~r~~l 175 (353)
T PRK10851 101 VLPRRERPNAAAIKAKVTQLLEMVQLAH-LADRYPAQLSGGQKQR----VALARALAVEPQILLLDEPFGALDAQVRKEL 175 (353)
T ss_pred hcccccCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHH----HHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence 110 00111222334555556666766 6778899999999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhcC-CccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhccCCCc
Q 010472 377 RIILKDFIDG-KLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDDLSSF 447 (509)
Q Consensus 377 ~~lLkd~~~g-kl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (509)
+.+|+++.+. +++++..+|++.++..+++.+++++.|++++.++.+....... .+.+..+++....+
T Consensus 176 ~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p~----~~~~~~~~g~~~~~ 243 (353)
T PRK10851 176 RRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPA----TRFVLEFMGEVNRL 243 (353)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc----chHHHHhcCcceee
Confidence 9999998764 6788999999999999999999999999988766654433211 23455566644433
No 44
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.88 E-value=4.4e-23 Score=214.53 Aligned_cols=204 Identities=17% Similarity=0.120 Sum_probs=155.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc-eeee----cCeEEEEeCCCccCCCCcccHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ-TLII----SEKLVLCDCPGLVFPSFSISRYDMV 298 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~-~~~~----~~~i~l~d~pg~~~p~~~~~~~e~v 298 (509)
++++|++++|+|+||||||||+++|+|+.. .|.+.++|...... ...+ +..++|+.|...+||.+ ++.+++
T Consensus 15 ~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~--TV~eNi 92 (363)
T TIGR01186 15 AIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHM--TILQNT 92 (363)
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCC--CHHHHH
Confidence 578999999999999999999999999987 89999999764321 1112 45799999988888887 566777
Q ss_pred HhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 299 ASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 299 ~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
..+..... . ...+..+.+.+.+..++|.. +..+.+..|||||+|| +.|||||+.+|.+| |+++||+..+
T Consensus 93 ~~~~~~~~-~-~~~~~~~~~~~~l~~vgL~~-~~~~~p~~LSGGq~QR----V~lARAL~~~p~iLLlDEP~saLD~~~r 165 (363)
T TIGR01186 93 SLGPELLG-W-PEQERKEKALELLKLVGLEE-YEHRYPDELSGGMQQR----VGLARALAAEPDILLMDEAFSALDPLIR 165 (363)
T ss_pred HHHHHHcC-C-CHHHHHHHHHHHHHhcCCch-hhhCChhhCCHHHHHH----HHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 65432111 1 11223344556666667766 7788899999999999 99999999999998 9999999999
Q ss_pred -HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc-cCcCCCCCCCccHHHHhcc
Q 010472 375 -AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE-EVPAHGDRTTPVLEHVLDD 443 (509)
Q Consensus 375 -~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 443 (509)
.+.++|.++.. .+.+++..+|+++++..+++.+++++.|+++..++.+.. .+.++ +.++.++++
T Consensus 166 ~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~-----~~~~~~~~~ 232 (363)
T TIGR01186 166 DSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPAN-----EYVEEFIGK 232 (363)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCccc-----HHHHHHhhc
Confidence 99999999865 467889999999998888888889999999876655443 32222 445555554
No 45
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=5.4e-23 Score=201.80 Aligned_cols=190 Identities=13% Similarity=0.162 Sum_probs=140.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce----eeecCeEEEEeCCCccCCCCcccHHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT----LIISEKLVLCDCPGLVFPSFSISRYDMVA 299 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~----~~~~~~i~l~d~pg~~~p~~~~~~~e~v~ 299 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|....... ...+..++|+.|...+|+.+ ++.+++.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~--tv~~~l~ 99 (235)
T cd03261 22 DVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSL--TVFENVA 99 (235)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCC--cHHHHHH
Confidence 478999999999999999999999999986 799999886542211 12345688888877777766 5566665
Q ss_pred hccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-
Q 010472 300 SGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR- 374 (509)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r- 374 (509)
.+....... ........+.+.+..++|.. +..+.+..|||||+|| +.||+||+.+|.++ ||+|||+.++
T Consensus 100 ~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qr----v~ia~al~~~p~llllDEPt~~LD~~~~~ 173 (235)
T cd03261 100 FPLREHTRL-SEEEIREIVLEKLEAVGLRG-AEDLYPAELSGGMKKR----VALARALALDPELLLYDEPTAGLDPIASG 173 (235)
T ss_pred HHHhhccCC-CHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHH----HHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence 442211001 11122223344444555655 5567788999999999 99999999999998 9999999999
Q ss_pred HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 375 AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 375 ~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
.+..+|+++.+ .+.+++...|++.....+++.+.+++.|++++.++.+.
T Consensus 174 ~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 223 (235)
T cd03261 174 VIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEE 223 (235)
T ss_pred HHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHH
Confidence 99999999875 35667777888888877777888888888877655443
No 46
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.88 E-value=7e-23 Score=214.11 Aligned_cols=208 Identities=12% Similarity=0.109 Sum_probs=158.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+|||||||||++|+|+.. .|.+.+.|....... ...+.++|++|...+||.+ ++.+++.+++.
T Consensus 36 ~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-~~~r~ig~vfQ~~~lfp~l--tv~eNi~~~l~ 112 (375)
T PRK09452 36 TINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVP-AENRHVNTVFQSYALFPHM--TVFENVAFGLR 112 (375)
T ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-HHHCCEEEEecCcccCCCC--CHHHHHHHHHh
Confidence 467899999999999999999999999987 799999997653211 1235789999988899988 66788877643
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
.. .. ........+.+.+..++|.. +..+.|..|||||+|| ++|||||+.+|++| |++|||...+ .++.
T Consensus 113 ~~-~~-~~~~~~~~~~~~l~~~~l~~-~~~~~p~~LSgGq~QR----VaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~ 185 (375)
T PRK09452 113 MQ-KT-PAAEITPRVMEALRMVQLEE-FAQRKPHQLSGGQQQR----VAIARAVVNKPKVLLLDESLSALDYKLRKQMQN 185 (375)
T ss_pred hc-CC-CHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHH----HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHH
Confidence 11 11 11122234445555556776 6778899999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhccCCCc
Q 010472 379 ILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDDLSSF 447 (509)
Q Consensus 379 lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (509)
.|+.+.+ .+++++..+|+..++...++.+++++.|+++..++.+....... .+...++++...-+
T Consensus 186 ~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~----~~~~a~~~g~~n~~ 251 (375)
T PRK09452 186 ELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK----NLFVARFIGEINIF 251 (375)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc----cHHHHHhcCcccee
Confidence 9999876 46788889999999888899999999999988766654433211 24556666654433
No 47
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=8.4e-23 Score=210.20 Aligned_cols=213 Identities=12% Similarity=0.059 Sum_probs=160.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce----eeecCeEEEEeCCC--ccCCCCcccHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT----LIISEKLVLCDCPG--LVFPSFSISRYDM 297 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~----~~~~~~i~l~d~pg--~~~p~~~~~~~e~ 297 (509)
++.+|+++||+|+||||||||+++|+|+.. .|.+.+.|....... ..++..++++.|.. .++|.+ +..++
T Consensus 37 ~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~--~v~~~ 114 (327)
T PRK11308 37 TLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRK--KVGQI 114 (327)
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCcc--CHHHH
Confidence 478999999999999999999999999986 799999986542211 12345688888864 466666 34444
Q ss_pred HHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHH
Q 010472 298 VASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDET 373 (509)
Q Consensus 298 v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~ 373 (509)
+...+...... ........+.+.+..++|...+...++..|||||+|| +.||+||+.+|++| ||+|||...
T Consensus 115 l~~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR----v~iArAL~~~P~lLilDEPts~LD~~~ 189 (327)
T PRK11308 115 LEEPLLINTSL-SAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR----IAIARALMLDPDVVVADEPVSALDVSV 189 (327)
T ss_pred HHHHHHHccCC-CHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH----HHHHHHHHcCCCEEEEECCCccCCHHH
Confidence 43221110011 1112334455556666675335577899999999999 99999999999998 999999999
Q ss_pred H-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhccCCCccc
Q 010472 374 R-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDDLSSFDL 449 (509)
Q Consensus 374 r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (509)
+ .+.++|+++.+ .++.++..+|++.....+++.+++++.|++++.++.+...+... .|+.+.++.+++.++.
T Consensus 190 ~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~~~p~----hpyt~~ll~~~p~~~~ 263 (327)
T PRK11308 190 QAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNPR----HPYTQALLSATPRLNP 263 (327)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCCC----CHHHHHHHHhCCCcCc
Confidence 9 99999999976 47889999999999999899999999999999888776654322 3788899998877654
No 48
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=3.9e-23 Score=189.57 Aligned_cols=206 Identities=13% Similarity=0.133 Sum_probs=164.1
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc------ce--------eeecCeEEEEeCCCccCCCC
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF------QT--------LIISEKLVLCDCPGLVFPSF 290 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~------~~--------~~~~~~i~l~d~pg~~~p~~ 290 (509)
...|+++.|||.+||||||+|+||.-+.. .|.+.+.|..... +. ..++..+++++|...+|+.+
T Consensus 29 A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHm 108 (256)
T COG4598 29 ANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHM 108 (256)
T ss_pred cCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHH
Confidence 35799999999999999999999998776 7888888754321 11 12234566666666666665
Q ss_pred cccHHHHHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eC
Q 010472 291 SISRYDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----AS 366 (509)
Q Consensus 291 ~~~~~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----Pt 366 (509)
++.++++.+-...-.. ...++++.+..++.++++.+ ....+|..|||||+|| ++||||||.+|.++ ||
T Consensus 109 --tvLeNViEaPvhVLg~-~k~ea~e~Ae~~L~kVGi~e-k~~~YP~~LSGGQQQR----~aIARaLameP~vmLFDEPT 180 (256)
T COG4598 109 --TVLENVIEAPVHVLGV-SKAEAIERAEKYLAKVGIAE-KADAYPAHLSGGQQQR----VAIARALAMEPEVMLFDEPT 180 (256)
T ss_pred --HHHHHHHhcchHhhcC-CHHHHHHHHHHHHHHhCchh-hhhcCccccCchHHHH----HHHHHHHhcCCceEeecCCc
Confidence 5666766553221111 23467777788888889988 5668899999999999 99999999999998 99
Q ss_pred CCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhccC
Q 010472 367 SGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDDL 444 (509)
Q Consensus 367 sGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (509)
++|||+.. .+..+++++.+.+-+.+..+|.|..+.-++..+.+++.|.+.+.++.+..+.+.. .+.++++++++
T Consensus 181 SALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf~nP~----S~RlkqFlssl 255 (256)
T COG4598 181 SALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQ----SPRLKQFLSSL 255 (256)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHhcCCC----CHHHHHHHHhc
Confidence 99999999 9999999999877778888999999999999999999999999999998887655 37888888754
No 49
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.88 E-value=7.8e-23 Score=208.28 Aligned_cols=187 Identities=14% Similarity=0.107 Sum_probs=143.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHh--c
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVAS--G 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~--g 301 (509)
++.+|+++||+|+||||||||+++|+|+.. .|.+.+.|..........+..++|+++...+++.++ ..+++.. .
T Consensus 24 ~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~t--v~e~l~~~~~ 101 (301)
T TIGR03522 24 EAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMY--VREYLQFIAG 101 (301)
T ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCc--HHHHHHHHHH
Confidence 478999999999999999999999999976 899999997643322234567899998877888874 4444432 1
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
.+.. ........+.+.+..++|.. +..+.+..||+||+|| +.||+||+.+|.++ ||+|||+.++ .+
T Consensus 102 ~~~~----~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qr----v~la~al~~~p~lliLDEPt~gLD~~~~~~l 172 (301)
T TIGR03522 102 IYGM----KGQLLKQRVEEMIELVGLRP-EQHKKIGQLSKGYRQR----VGLAQALIHDPKVLILDEPTTGLDPNQLVEI 172 (301)
T ss_pred HcCC----CHHHHHHHHHHHHHHCCCch-HhcCchhhCCHHHHHH----HHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 2111 11111223344444456665 5567788999999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 377 RIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 377 ~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
+.+|+.+.++ .+++...|.+.+.+..|+.++++..|+++..++.+..
T Consensus 173 ~~~l~~~~~~-~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~ 219 (301)
T TIGR03522 173 RNVIKNIGKD-KTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDEL 219 (301)
T ss_pred HHHHHHhcCC-CEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999775 7789999999998888888888888988876665543
No 50
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.2e-22 Score=197.50 Aligned_cols=186 Identities=12% Similarity=0.089 Sum_probs=138.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|.............++|+.+...+++.+ ++.+++..+..
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~--tv~~~l~~~~~ 99 (220)
T cd03265 22 RVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDEL--TGWENLYIHAR 99 (220)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccC--cHHHHHHHHHH
Confidence 467899999999999999999999999976 78999988654321122345688888877777766 44555543221
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
.. .. ........+.+.+..++|.. +....+..||+||+|| +.||+|++.+|.++ ||+|||+.++ .+..
T Consensus 100 ~~-~~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----~~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 172 (220)
T cd03265 100 LY-GV-PGAERRERIDELLDFVGLLE-AADRLVKTYSGGMRRR----LEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWE 172 (220)
T ss_pred Hc-CC-CHHHHHHHHHHHHHHcCCHH-HhhCChhhCCHHHHHH----HHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHH
Confidence 00 01 11112233445555556765 5567788999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhcC-CccEEEcCCCCChhhccchhhHhhcccccccCCC
Q 010472 379 ILKDFIDG-KLPHFEMPPGMSHEEVGMEDTQASSLLELHESDA 420 (509)
Q Consensus 379 lLkd~~~g-kl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (509)
+|+++... +..++..+|+......+++.+.+++.|++++.++
T Consensus 173 ~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 215 (220)
T cd03265 173 YIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGT 215 (220)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCC
Confidence 99998753 5678888899888887777888888888876543
No 51
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.87 E-value=1.3e-22 Score=206.88 Aligned_cols=186 Identities=14% Similarity=0.093 Sum_probs=140.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHh-c-
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVAS-G- 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~-g- 301 (509)
++.+|+++||+|+||||||||+++|+|+.. .|.+.+.|..........+..++|++|...+++.+ ++.+++.. +
T Consensus 26 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~--tv~e~l~~~~~ 103 (303)
T TIGR01288 26 TIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEF--TVRENLLVFGR 103 (303)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCC--cHHHHHHHHHH
Confidence 478999999999999999999999999976 79999998754322222345688998877777776 45555532 2
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
.+.. ........+.+.+..++|.. +....+..||+||+|| +.||+||+.+|.++ ||+|||+.++ .+
T Consensus 104 ~~~~----~~~~~~~~~~~ll~~~~l~~-~~~~~~~~LSgG~~qr----v~la~al~~~p~lllLDEPt~gLD~~~~~~l 174 (303)
T TIGR01288 104 YFGM----STREIEAVIPSLLEFARLES-KADVRVALLSGGMKRR----LTLARALINDPQLLILDEPTTGLDPHARHLI 174 (303)
T ss_pred HcCC----CHHHHHHHHHHHHHHCCChh-HhcCchhhCCHHHHHH----HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 1111 11111222333444455665 5567788999999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 377 RIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 377 ~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
+.+|+++.+.+.+++...|++...+.+++.+.++..|+++..++.+
T Consensus 175 ~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 220 (303)
T TIGR01288 175 WERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPH 220 (303)
T ss_pred HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 9999999765677888999999988777788888888887765543
No 52
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.87 E-value=1.6e-22 Score=195.84 Aligned_cols=181 Identities=18% Similarity=0.148 Sum_probs=133.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce----eeecCeEEEEeCCCccCCCCcccHHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT----LIISEKLVLCDCPGLVFPSFSISRYDMVA 299 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~----~~~~~~i~l~d~pg~~~p~~~~~~~e~v~ 299 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|....... ...+..++|+.|...+++.+ ++.+++.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--tv~e~l~ 102 (216)
T TIGR00960 25 HITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDR--TVYDNVA 102 (216)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccc--cHHHHHH
Confidence 467999999999999999999999999976 799999986542110 11345688888877777766 4566655
Q ss_pred hccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-
Q 010472 300 SGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR- 374 (509)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r- 374 (509)
.+..... . ........+.+.+..+++.. +....+..||+||+|| ++||+||+.+|+++ ||+|||+.++
T Consensus 103 ~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qr----v~laral~~~p~llllDEPt~~LD~~~~~ 175 (216)
T TIGR00960 103 FPLRIIG-V-PPRDANERVSAALEKVGLEG-KAHALPMQLSGGEQQR----VAIARAIVHKPPLLLADEPTGNLDPELSR 175 (216)
T ss_pred HHHHhcC-C-CHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHH----HHHHHHHhcCCCEEEEeCCCCcCCHHHHH
Confidence 4321100 0 11112233445555556766 5667788999999999 99999999999998 9999999999
Q ss_pred HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhccccc
Q 010472 375 AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLEL 415 (509)
Q Consensus 375 ~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~ 415 (509)
.+..+|+.+.+.+.+++..+|+......+++.+.+++.|++
T Consensus 176 ~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 176 DIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999876556677888888887766666666666653
No 53
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.8e-22 Score=211.31 Aligned_cols=208 Identities=12% Similarity=0.110 Sum_probs=157.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+|||||||||++|+|+.. .|.+.+.|....... ..++.++|++|...+||.+ ++.+++.+++.
T Consensus 41 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~-~~~r~ig~vfQ~~~lfp~l--tv~eNi~~~l~ 117 (377)
T PRK11607 41 TIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVP-PYQRPINMMFQSYALFPHM--TVEQNIAFGLK 117 (377)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-HHHCCEEEEeCCCccCCCC--CHHHHHHHHHH
Confidence 467899999999999999999999999987 799999997643211 2345799999998899988 66778876643
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
... . ...+....+.+.+..++|.. +..+.+..|||||+|| ++|||||+.+|.+| |+++||...+ .++.
T Consensus 118 ~~~-~-~~~~~~~~v~~~l~~l~L~~-~~~~~~~~LSgGq~QR----VaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~ 190 (377)
T PRK11607 118 QDK-L-PKAEIASRVNEMLGLVHMQE-FAKRKPHQLSGGQRQR----VALARSLAKRPKLLLLDEPMGALDKKLRDRMQL 190 (377)
T ss_pred HcC-C-CHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHH----HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 211 1 11222334555555566766 6678899999999999 99999999999998 9999999999 8888
Q ss_pred HHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhccCCCc
Q 010472 379 ILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDDLSSF 447 (509)
Q Consensus 379 lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (509)
.|+.+.+ .+++++..+|+..++...++.+++++.|+++..++.+....... ......+++...-|
T Consensus 191 ~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~----~~~~a~~~g~~n~~ 256 (377)
T PRK11607 191 EVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPT----TRYSAEFIGSVNVF 256 (377)
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCc----cHHHHHhcCcccce
Confidence 8888754 46788888999999888888999999999988776654433211 23455555544433
No 54
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.5e-22 Score=209.79 Aligned_cols=190 Identities=16% Similarity=0.096 Sum_probs=144.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce----eeecCeEEEEeCCCccCCCCcccHHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT----LIISEKLVLCDCPGLVFPSFSISRYDMVA 299 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~----~~~~~~i~l~d~pg~~~p~~~~~~~e~v~ 299 (509)
++.+|+++||+|+||||||||+++|+|+.+ .|.+.+.|....... ...+..++|+.|...+|+.+ ++.+++.
T Consensus 27 ~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~--tv~eni~ 104 (343)
T PRK11153 27 HIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSR--TVFDNVA 104 (343)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCC--cHHHHHH
Confidence 578999999999999999999999999986 799999997643211 11245788998877777766 5566665
Q ss_pred hccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-
Q 010472 300 SGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR- 374 (509)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r- 374 (509)
.+.... .. ........+.+.+..++|.. +....+..|||||+|| ++||+||+.+|.+| ||+|||+.++
T Consensus 105 ~~~~~~-~~-~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~qR----v~lAraL~~~p~iLlLDEPts~LD~~~~~ 177 (343)
T PRK11153 105 LPLELA-GT-PKAEIKARVTELLELVGLSD-KADRYPAQLSGGQKQR----VAIARALASNPKVLLCDEATSALDPATTR 177 (343)
T ss_pred HHHHHc-CC-CHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHH----HHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 432110 01 11112233444555556765 5567788999999999 99999999999998 9999999999
Q ss_pred HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 375 AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 375 ~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
.+..+|+++.+ .+.+++..+|++.....+++.+.+++.|++++.++.+..
T Consensus 178 ~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~ 228 (343)
T PRK11153 178 SILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEV 228 (343)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999965 367788889999988877788888899999876665443
No 55
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.87 E-value=2e-22 Score=210.62 Aligned_cols=189 Identities=13% Similarity=0.050 Sum_probs=146.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|....... .....++|+.|...+||.+ ++.+++..+..
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~-~~~~~i~~v~Q~~~l~~~~--tv~eni~~~~~ 101 (369)
T PRK11000 25 DIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVP-PAERGVGMVFQSYALYPHL--SVAENMSFGLK 101 (369)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-HhHCCEEEEeCCcccCCCC--CHHHHHHhHHh
Confidence 467899999999999999999999999986 799999987643211 1235689999988888887 56777765532
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
.. .. ........+.+.+..++|.. +..+.+..|||||+|| ++||+||+.+|++| |++|||...+ .++.
T Consensus 102 ~~-~~-~~~~~~~~~~~~l~~lgL~~-~~~~~~~~LSgGq~QR----vaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~ 174 (369)
T PRK11000 102 LA-GA-KKEEINQRVNQVAEVLQLAH-LLDRKPKALSGGQRQR----VAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRI 174 (369)
T ss_pred hc-CC-CHHHHHHHHHHHHHHcCChh-hhcCChhhCCHHHHHH----HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 11 11 11122234455555566766 6677889999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 379 ILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 379 lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
+|+++.. .+.+++..+|+..+...+++.+++++.|+++..++.+..
T Consensus 175 ~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i 221 (369)
T PRK11000 175 EISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221 (369)
T ss_pred HHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999865 466788888999888888888899999999886665443
No 56
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=2.9e-22 Score=193.64 Aligned_cols=182 Identities=14% Similarity=0.113 Sum_probs=133.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|....... .....++|+++...+++.+ +..+++..+..
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~-~~~~~i~~v~q~~~~~~~~--tv~~~l~~~~~ 98 (213)
T cd03259 22 TVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP-PERRNIGMVFQDYALFPHL--TVAENIAFGLK 98 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc-hhhccEEEEcCchhhccCC--cHHHHHHhHHH
Confidence 477899999999999999999999999976 799999886543211 1234688888876666666 45566544321
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
.. .. ........+.+.+..+++.. +....+..||+||+|| +.||+||+.+|.++ ||+|||+.++ .+..
T Consensus 99 ~~-~~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qr----l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~ 171 (213)
T cd03259 99 LR-GV-PKAEIRARVRELLELVGLEG-LLNRYPHELSGGQQQR----VALARALAREPSLLLLDEPLSALDAKLREELRE 171 (213)
T ss_pred Hc-CC-CHHHHHHHHHHHHHHcCChh-hhhcChhhCCHHHHHH----HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 10 00 11112223444455556765 5567788999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhc-CCccEEEcCCCCChhhccchhhHhhccccccc
Q 010472 379 ILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHE 417 (509)
Q Consensus 379 lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~ 417 (509)
+|+++.+ .+..++...|++.....+++.+.+++.|++++
T Consensus 172 ~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 211 (213)
T cd03259 172 ELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQ 211 (213)
T ss_pred HHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 9999865 35567778888887666667777777777754
No 57
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=4.6e-22 Score=195.76 Aligned_cols=190 Identities=14% Similarity=0.134 Sum_probs=139.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|....... .....++|+.+...+++.+ ++.+++..+..
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~i~~v~q~~~~~~~~--tv~e~l~~~~~ 100 (239)
T cd03296 24 DIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVP-VQERNVGFVFQHYALFRHM--TVFDNVAFGLR 100 (239)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC-ccccceEEEecCCcccCCC--CHHHHHhhhhh
Confidence 467899999999999999999999999976 799999987543211 1234688888876666665 55666654321
Q ss_pred Ccch--hhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 304 PIDR--MTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 304 ~~~~--~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
.... ..........+.+.+..++|.. +....+..||+||+|| ++||+||+.+|.++ |++|||+..+ .+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----l~la~al~~~p~llllDEP~~~LD~~~~~~l 175 (239)
T cd03296 101 VKPRSERPPEAEIRAKVHELLKLVQLDW-LADRYPAQLSGGQRQR----VALARALAVEPKVLLLDEPFGALDAKVRKEL 175 (239)
T ss_pred hccccccCCHHHHHHHHHHHHHHcCChh-hhhcChhhCCHHHHHH----HHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 1000 0011111223444445555665 5567788999999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 377 RIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 377 ~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
..+|+++.+ .+.+++...|+......+++.+.+++.|++++.++.+.
T Consensus 176 ~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 223 (239)
T cd03296 176 RRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDE 223 (239)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHH
Confidence 999999975 35677788888887777677888888888877665543
No 58
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.87 E-value=3.1e-22 Score=194.32 Aligned_cols=186 Identities=16% Similarity=0.132 Sum_probs=138.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|.............++|+.+...+++.+ +..+++.....
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~--tv~~~l~~~~~ 101 (220)
T cd03263 24 NVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDEL--TVREHLRFYAR 101 (220)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccC--CHHHHHHHHHH
Confidence 467899999999999999999999999976 79999988754321122345688888876676666 44555543211
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
... . ........+.+.+..++|.. +....+..||+||+|| ++||+||+.+|.++ |++|||+.++ .+..
T Consensus 102 ~~~-~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----v~la~al~~~p~llllDEP~~~LD~~~~~~l~~ 174 (220)
T cd03263 102 LKG-L-PKSEIKEEVELLLRVLGLTD-KANKRARTLSGGMKRK----LSLAIALIGGPSVLLLDEPTSGLDPASRRAIWD 174 (220)
T ss_pred HcC-C-CHHHHHHHHHHHHHHcCCHH-HHhChhhhCCHHHHHH----HHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHH
Confidence 000 0 11111223444444555665 4556678999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 379 ILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 379 lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
+|+++.++ .+++...|.+.....+++.+.+++.|++++.++.
T Consensus 175 ~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~ 216 (220)
T cd03263 175 LILEVRKG-RSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSP 216 (220)
T ss_pred HHHHHhcC-CEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCH
Confidence 99999876 7788888988888777778888888888765543
No 59
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=1.7e-22 Score=199.77 Aligned_cols=208 Identities=14% Similarity=0.054 Sum_probs=170.0
Q ss_pred CccCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce----ee-ecCeEEEEeCCCccCCCCcccHHH
Q 010472 224 GNVAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT----LI-ISEKLVLCDCPGLVFPSFSISRYD 296 (509)
Q Consensus 224 ~~~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~----~~-~~~~i~l~d~pg~~~p~~~~~~~e 296 (509)
.-+++.|+++.|+|-+|||||||+++|.++.. .|.+.+.|.....-. .. .+..+.+++|..-++|.. ++.+
T Consensus 48 sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr--tVl~ 125 (386)
T COG4175 48 SLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR--TVLE 125 (386)
T ss_pred eeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch--hHhh
Confidence 34678999999999999999999999999987 799999997643211 11 235688888888888887 7788
Q ss_pred HHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHH
Q 010472 297 MVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDE 372 (509)
Q Consensus 297 ~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~ 372 (509)
|+.+|+--... ...+..+.+.+.++.++|.. |..++|++|||||+|| +.|||||+.+|.+| |+++|||.
T Consensus 126 Nv~fGLev~Gv--~~~er~~~a~~~l~~VgL~~-~~~~yp~eLSGGMqQR----VGLARAla~~~~IlLMDEaFSALDPL 198 (386)
T COG4175 126 NVAFGLEVQGV--PKAEREERALEALELVGLEG-YADKYPNELSGGMQQR----VGLARALANDPDILLMDEAFSALDPL 198 (386)
T ss_pred hhhcceeecCC--CHHHHHHHHHHHHHHcCchh-hhhcCcccccchHHHH----HHHHHHHccCCCEEEecCchhhcChH
Confidence 88888653221 23456667778888888988 9999999999999999 99999999999998 99999999
Q ss_pred HH-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhccccccc-CCCCccccCcCCCCCCCccHHHHhccCC
Q 010472 373 TR-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHE-SDASDAEEVPAHGDRTTPVLEHVLDDLS 445 (509)
Q Consensus 373 ~r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (509)
-| .+.+-|.++.. -+-++++.+|+++++-..-+++++|++|+++. ++|.++..+.++ .++.+++.+..
T Consensus 199 IR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PAn-----dYV~~Fv~~v~ 269 (386)
T COG4175 199 IRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPAN-----DYVRDFVRNVD 269 (386)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCccH-----HHHHHHHhcCC
Confidence 99 88888888865 46778889999999999999999999999988 555566666554 67788777665
No 60
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.87 E-value=4.4e-22 Score=199.00 Aligned_cols=212 Identities=14% Similarity=0.081 Sum_probs=165.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCccccc-ce----eeecCeEEEEeCCCcc--CCCCc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHF-QT----LIISEKLVLCDCPGLV--FPSFS 291 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~-~~----~~~~~~i~l~d~pg~~--~p~~~ 291 (509)
++.+|+++||||.+||||||+.++|+|+++ .|.+.+.|..... .. ......+++++|.... .|.+
T Consensus 27 ~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~- 105 (316)
T COG0444 27 ELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVM- 105 (316)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChh-
Confidence 478999999999999999999999999875 3677888875321 11 1124578888886443 2333
Q ss_pred ccHHHHHHhccCCcchhhhHHHHHHHHHHhCCccchhhH--hhccCCCCCCccccCCCchHHHHHHHHHHcCCce----e
Q 010472 292 ISRYDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIENV--CKINLPKPKPYESQSRPPLALELLRAYCASRGYV----A 365 (509)
Q Consensus 292 ~~~~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~--~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----P 365 (509)
+....+...+..........++.+.+.+.+..++|.+. ....+|++|||||+|| +.||.||+.+|++| |
T Consensus 106 -~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQR----V~IAmala~~P~LlIADEP 180 (316)
T COG0444 106 -TIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQR----VMIAMALALNPKLLIADEP 180 (316)
T ss_pred -hHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHH----HHHHHHHhCCCCEEEeCCC
Confidence 34444433332111110223455667777777777532 4577899999999999 99999999999999 9
Q ss_pred CCCCCHHHH-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhcc
Q 010472 366 SSGLPDETR-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDD 443 (509)
Q Consensus 366 tsGLD~~~r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (509)
|++||...+ .+.++|+++++ -++.++..+|++.-....++++++|+.|+++|.++.+..+.+..+ |+.+-++++
T Consensus 181 TTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~~P~H----PYT~~Ll~s 256 (316)
T COG0444 181 TTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNPKH----PYTRGLLNS 256 (316)
T ss_pred cchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhcCCCC----hHHHHHHHh
Confidence 999999999 99999999987 678999999999999999999999999999999999888877665 999999999
Q ss_pred CCCc
Q 010472 444 LSSF 447 (509)
Q Consensus 444 ~~~~ 447 (509)
+++.
T Consensus 257 ~P~~ 260 (316)
T COG0444 257 LPRL 260 (316)
T ss_pred Cccc
Confidence 9877
No 61
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5.6e-22 Score=204.10 Aligned_cols=213 Identities=11% Similarity=0.066 Sum_probs=155.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc------ceEEeeCCcccccce----ee-ecCeEEEEeCCC--ccCCCCcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR------TGVTSTPGKTKHFQT----LI-ISEKLVLCDCPG--LVFPSFSI 292 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~------~g~~~~~G~t~~~~~----~~-~~~~i~l~d~pg--~~~p~~~~ 292 (509)
++.+|+++||||+||||||||+++|+|++. .|.+.+.|....... .. ....++++.|.. .++|.++
T Consensus 29 ~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~- 107 (326)
T PRK11022 29 SVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYT- 107 (326)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCC-
Confidence 578999999999999999999999999874 588899987542211 11 123688888865 3566663
Q ss_pred cHHHHHHhccCCcchhhhHHHHHHHHHHhCCccchhh--HhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eC
Q 010472 293 SRYDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIEN--VCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----AS 366 (509)
Q Consensus 293 ~~~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~--~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----Pt 366 (509)
..+.+...+...... ...+....+.+.+..++|.+ .+....+..|||||+|| +.||+||+.+|++| ||
T Consensus 108 -v~~~i~~~l~~~~~~-~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QR----v~iArAL~~~P~llilDEPt 181 (326)
T PRK11022 108 -VGFQIMEAIKVHQGG-NKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQR----VMIAMAIACRPKLLIADEPT 181 (326)
T ss_pred -HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHH----HHHHHHHHhCCCEEEEeCCC
Confidence 333332221110000 11122334445555555642 24567789999999999 99999999999998 99
Q ss_pred CCCCHHHH-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhccC
Q 010472 367 SGLPDETR-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDDL 444 (509)
Q Consensus 367 sGLD~~~r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (509)
+|||...+ .+.++|+++.+ .+..++..+|++..+...++.+++++.|++++.++.+....... .|+.+.++.++
T Consensus 182 s~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~~~p~----hpyt~~ll~~~ 257 (326)
T PRK11022 182 TALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPR----HPYTQALLRAL 257 (326)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhhCCC----ChHHHHHHHhC
Confidence 99999999 99999999976 46789999999999988888889999999999888766554332 37888999888
Q ss_pred CCccc
Q 010472 445 SSFDL 449 (509)
Q Consensus 445 ~~~~~ 449 (509)
+.++.
T Consensus 258 ~~~~~ 262 (326)
T PRK11022 258 PEFAQ 262 (326)
T ss_pred ccccc
Confidence 77653
No 62
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.87 E-value=3.5e-22 Score=193.66 Aligned_cols=183 Identities=11% Similarity=0.035 Sum_probs=136.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|..........+..++++.+...+|+.+ ++.+++.....
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~--tv~e~l~~~~~ 104 (218)
T cd03266 27 TVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRL--TARENLEYFAG 104 (218)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCC--CHHHHHHHHHH
Confidence 467899999999999999999999999976 79999998764322222345688888877777766 45555533211
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
.. .. ........+.+.+..+++.+ +....+..||+||+|| ++||+|++.+|.++ |++|||+.++ .+..
T Consensus 105 ~~-~~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----v~laral~~~p~illlDEPt~~LD~~~~~~l~~ 177 (218)
T cd03266 105 LY-GL-KGDELTARLEELADRLGMEE-LLDRRVGGFSTGMRQK----VAIARALVHDPPVLLLDEPTTGLDVMATRALRE 177 (218)
T ss_pred Hc-CC-CHHHHHHHHHHHHHHcCCHH-HHhhhhhhcCHHHHHH----HHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHH
Confidence 00 00 11122234445555556765 5567788999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhcCCccEEEcCCCCChhhccchhhHhhccccccc
Q 010472 379 ILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHE 417 (509)
Q Consensus 379 lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~ 417 (509)
+|+++.+.+.+++..+|+......+++.+.++..|++++
T Consensus 178 ~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~ 216 (218)
T cd03266 178 FIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216 (218)
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence 999997655678888888887776667777777777754
No 63
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.86 E-value=3.8e-22 Score=195.76 Aligned_cols=189 Identities=15% Similarity=0.131 Sum_probs=139.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce-ee-ecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT-LI-ISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~-~~-~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|....... .. .+..++|+.+...+|+.+ +..+++..+
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~--tv~~~l~~~ 99 (236)
T cd03219 22 SVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPEL--TVLENVMVA 99 (236)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCC--CHHHHHHHH
Confidence 467899999999999999999999999976 799999887543211 11 134588888876677766 455665443
Q ss_pred cCCcchh--------hhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCC
Q 010472 302 VLPIDRM--------TEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGL 369 (509)
Q Consensus 302 ~~~~~~~--------~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGL 369 (509)
....... .........+.+.+..+++.. +....+..||+||+|| +.||+||+.+|.++ ||+||
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qr----v~la~al~~~p~llllDEPt~~L 174 (236)
T cd03219 100 AQARTGSGLLLARARREEREARERAEELLERVGLAD-LADRPAGELSYGQQRR----LEIARALATDPKLLLLDEPAAGL 174 (236)
T ss_pred HhhccccccccccccccHHHHHHHHHHHHHHcCccc-hhhCChhhCCHHHHHH----HHHHHHHhcCCCEEEEcCCcccC
Confidence 2211000 001122233445555556765 5567788999999999 99999999999998 99999
Q ss_pred CHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 370 PDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 370 D~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
|..++ .+..+|+++.+.+.+++..+|+......+++.+.+++.|++++.++.
T Consensus 175 D~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 227 (236)
T cd03219 175 NPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTP 227 (236)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCH
Confidence 99999 99999999875455778888888888777788888888888765443
No 64
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.86 E-value=5.9e-22 Score=191.48 Aligned_cols=180 Identities=14% Similarity=0.121 Sum_probs=132.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|.... ..+..++|+++...+++.+..++.+++..+..
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~----~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~ 96 (213)
T cd03235 21 EVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE----KERKRIGYVPQRRSIDRDFPISVRDVVLMGLY 96 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH----HHHhheEEeccccccccCCCCcHHHHHHhccc
Confidence 477999999999999999999999999976 799999886542 13446888887655444333477777765432
Q ss_pred Ccchh--hhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 304 PIDRM--TEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 304 ~~~~~--~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
..... .........+.+.+..+++.. +..+.+..||+||+|| +.||+||+.+|+++ ||+|||+.++ .+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qr----v~la~al~~~p~llllDEPt~~LD~~~~~~l 171 (213)
T cd03235 97 GHKGLFRRLSKADKAKVDEALERVGLSE-LADRQIGELSGGQQQR----VLLARALVQDPDLLLLDEPFAGVDPKTQEDI 171 (213)
T ss_pred cccccccCCCHHHHHHHHHHHHHcCCHH-HHhCCcccCCHHHHHH----HHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 11000 000111223444445556765 5667788999999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccc
Q 010472 377 RIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLE 414 (509)
Q Consensus 377 ~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~ 414 (509)
..+|+++.+.+.+++..+|++.....+++.+.+++.+.
T Consensus 172 ~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~ 209 (213)
T cd03235 172 YELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTV 209 (213)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcE
Confidence 99999997555678888888888776666666666653
No 65
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.86 E-value=4.9e-22 Score=194.47 Aligned_cols=188 Identities=11% Similarity=0.103 Sum_probs=138.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce--eeecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT--LIISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~--~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
.+.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|....... ...+..++|+++...+|+.+ +..+++..+
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--tv~~~l~~~ 99 (232)
T cd03218 22 SVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKL--TVEENILAV 99 (232)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccC--cHHHHHHHH
Confidence 467899999999999999999999999976 799999886542211 11234588888877777776 445555443
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
..... . ........+.+.+..+++.. +....+..||+||+|| +.||+|++.+|.++ ||+|||..++ .+
T Consensus 100 ~~~~~-~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----l~la~al~~~p~llllDEPt~~LD~~~~~~~ 172 (232)
T cd03218 100 LEIRG-L-SKKEREEKLEELLEEFHITH-LRKSKASSLSGGERRR----VEIARALATNPKFLLLDEPFAGVDPIAVQDI 172 (232)
T ss_pred HHhcC-C-CHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHH----HHHHHHHhcCCCEEEecCCcccCCHHHHHHH
Confidence 21100 0 11111223334444456665 5567788999999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 377 RIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 377 ~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
..+|+++.+.+.+++..+|++.....+++.+.+++.|+++..++.+
T Consensus 173 ~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 218 (232)
T cd03218 173 QKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPE 218 (232)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHH
Confidence 9999998765566788888887777777788888888887655443
No 66
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.86 E-value=5.1e-22 Score=195.48 Aligned_cols=190 Identities=14% Similarity=0.148 Sum_probs=141.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc---eeeecCeEEEEeCCCccCCCCcccHHHHHHh
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ---TLIISEKLVLCDCPGLVFPSFSISRYDMVAS 300 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~---~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~ 300 (509)
++.+|++++|+|+||+|||||+++|+|+.. .|.+.+.|...... ....+..++|+.+...+++.+ ++.+++..
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--tv~~~l~~ 100 (240)
T PRK09493 23 NIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHL--TALENVMF 100 (240)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCC--cHHHHHHh
Confidence 467899999999999999999999999976 79999999764321 112345688888876677666 45666544
Q ss_pred ccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-H
Q 010472 301 GVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-A 375 (509)
Q Consensus 301 g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~ 375 (509)
+....... ........+.+.+..+++.. +....+..||+||+|| +.||+||+.+|+++ |++|||..++ .
T Consensus 101 ~~~~~~~~-~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qr----v~la~al~~~p~llllDEP~~~LD~~~~~~ 174 (240)
T PRK09493 101 GPLRVRGA-SKEEAEKQARELLAKVGLAE-RAHHYPSELSGGQQQR----VAIARALAVKPKLMLFDEPTSALDPELRHE 174 (240)
T ss_pred HHHHhcCC-CHHHHHHHHHHHHHHcCChH-HHhcChhhcCHHHHHH----HHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 32111011 11122233445555566765 5567788999999999 99999999999998 9999999999 9
Q ss_pred HHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 376 ARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 376 ~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
+..+|+++.+.+..++..+|++.....+++.+.++..|++++.++.+.
T Consensus 175 l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 222 (240)
T PRK09493 175 VLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQV 222 (240)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHH
Confidence 999999987655678888888888877778888888888887655443
No 67
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=5.6e-22 Score=192.68 Aligned_cols=182 Identities=15% Similarity=0.104 Sum_probs=133.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|.... .....++|+.+...+++.+ +..+++..+..
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~----~~~~~i~~v~q~~~~~~~~--tv~e~l~~~~~ 99 (220)
T cd03293 26 SVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVT----GPGPDRGYVFQQDALLPWL--TVLDNVALGLE 99 (220)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECc----cccCcEEEEecccccccCC--CHHHHHHHHHH
Confidence 477899999999999999999999999976 799999886542 1245688888876666666 44555543321
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
.. .. ........+.+.+..++|.+ +....+..||+||+|| +.||+||+.+|.++ ||+|||+.++ .+..
T Consensus 100 ~~-~~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qr----l~la~al~~~p~lllLDEPt~~LD~~~~~~~~~ 172 (220)
T cd03293 100 LQ-GV-PKAEARERAEELLELVGLSG-FENAYPHQLSGGMRQR----VALARALAVDPDVLLLDEPFSALDALTREQLQE 172 (220)
T ss_pred Hc-CC-CHHHHHHHHHHHHHHcCChh-hhhCCcccCCHHHHHH----HHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHH
Confidence 00 01 11112233445555556765 5567788999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhh-cCCccEEEcCCCCChhhccchhhHhhc--ccccccCCC
Q 010472 379 ILKDFI-DGKLPHFEMPPGMSHEEVGMEDTQASS--LLELHESDA 420 (509)
Q Consensus 379 lLkd~~-~gkl~~~~~pp~~~~~~~~~~~~~~~~--~~~~~~~~~ 420 (509)
+|+++. +.+.+++...|.+.....+++.+.+++ .|++++..+
T Consensus 173 ~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~ 217 (220)
T cd03293 173 ELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVE 217 (220)
T ss_pred HHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEE
Confidence 999985 345667778888877666666667776 577766443
No 68
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=7.4e-22 Score=197.95 Aligned_cols=190 Identities=14% Similarity=0.052 Sum_probs=139.8
Q ss_pred ccCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce-ee----ecCeEEEEeCCCccCCCCcccHHHH
Q 010472 225 NVAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT-LI----ISEKLVLCDCPGLVFPSFSISRYDM 297 (509)
Q Consensus 225 ~~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~-~~----~~~~i~l~d~pg~~~p~~~~~~~e~ 297 (509)
-++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|....... .. ....++|+.+...+|+.+ +..++
T Consensus 45 ~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~--tv~e~ 122 (269)
T cd03294 45 LDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHR--TVLEN 122 (269)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCC--cHHHH
Confidence 3578999999999999999999999999986 799999986542211 01 124688888876677666 45666
Q ss_pred HHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHH
Q 010472 298 VASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDET 373 (509)
Q Consensus 298 v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~ 373 (509)
+..+... ... ........+.+.+..++|.. +....+..||+||+|| ++||+||+.+|.+| ||+|||..+
T Consensus 123 l~~~~~~-~~~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Gq~qr----v~lAral~~~p~illLDEPt~~LD~~~ 195 (269)
T cd03294 123 VAFGLEV-QGV-PRAEREERAAEALELVGLEG-WEHKYPDELSGGMQQR----VGLARALAVDPDILLMDEAFSALDPLI 195 (269)
T ss_pred HHHHHHh-cCC-CHHHHHHHHHHHHHHcCCHh-HhhCCcccCCHHHHHH----HHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 5543210 000 11112223444555556765 5677889999999999 99999999999998 999999999
Q ss_pred H-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 374 R-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 374 r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
+ .+..+|+++.. .+.+++..+|++.....+++.+.+++.|++++.++.+.
T Consensus 196 ~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 247 (269)
T cd03294 196 RREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEE 247 (269)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9 99999999864 35677888888888777677788888888877655443
No 69
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.86 E-value=6.5e-22 Score=191.77 Aligned_cols=179 Identities=15% Similarity=0.133 Sum_probs=129.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce----e-eecCeEEEEeCCCccCCCCcccHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT----L-IISEKLVLCDCPGLVFPSFSISRYDMV 298 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~----~-~~~~~i~l~d~pg~~~p~~~~~~~e~v 298 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|....... . .....++|+.+...+|+.+ ++.+++
T Consensus 26 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--tv~e~l 103 (218)
T cd03255 26 SIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDL--TALENV 103 (218)
T ss_pred EEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCC--cHHHHH
Confidence 477999999999999999999999999976 799999886543211 0 1234688888876677766 455665
Q ss_pred HhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 299 ASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 299 ~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
..+..... . ........+.+.+..++|.. +....+..||+||+|| ++||+||+.+|.++ |++|||+.++
T Consensus 104 ~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----v~la~al~~~p~lllLDEP~~~LD~~~~ 176 (218)
T cd03255 104 ELPLLLAG-V-PKKERRERAEELLERVGLGD-RLNHYPSELSGGQQQR----VAIARALANDPKIILADEPTGNLDSETG 176 (218)
T ss_pred HHHHhhcC-C-CHHHHHHHHHHHHHHcCCch-hhhcChhhcCHHHHHH----HHHHHHHccCCCEEEEcCCcccCCHHHH
Confidence 54322111 0 11111223444444556665 4566788999999999 99999999999998 9999999999
Q ss_pred -HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccc
Q 010472 375 -AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLE 414 (509)
Q Consensus 375 -~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~ 414 (509)
.+..+|+++.+ .+.+++...|+....+ +++.+.+++.|+
T Consensus 177 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~ 217 (218)
T cd03255 177 KEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGK 217 (218)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCc
Confidence 99999999976 4566777777777777 555666665554
No 70
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.86 E-value=5.5e-22 Score=193.55 Aligned_cols=186 Identities=17% Similarity=0.098 Sum_probs=136.5
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCC-----c--ceEEeeCCcccccc---eeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQK-----R--TGVTSTPGKTKHFQ---TLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~-----~--~g~~~~~G~t~~~~---~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
++.+|++++|+|+||||||||+++|+|+. . .|.+.+.|...... ....+..++|+++...+| .+ ++.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~--tv~ 98 (227)
T cd03260 22 DIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PG--SIY 98 (227)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cc--cHH
Confidence 46789999999999999999999999997 5 79999998754221 112345688888876665 44 566
Q ss_pred HHHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccC--CCCCCccccCCCchHHHHHHHHHHcCCce----eCCCC
Q 010472 296 DMVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINL--PKPKPYESQSRPPLALELLRAYCASRGYV----ASSGL 369 (509)
Q Consensus 296 e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~--~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGL 369 (509)
+++..+..... ..........+.+.+..+++.. +.... +..||+||+|| ++||+||+.+|+++ ||+||
T Consensus 99 e~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LSgG~~qr----v~la~al~~~p~llllDEPt~~L 172 (227)
T cd03260 99 DNVAYGLRLHG-IKLKEELDERVEEALRKAALWD-EVKDRLHALGLSGGQQQR----LCLARALANEPEVLLLDEPTSAL 172 (227)
T ss_pred HHHHhHHHhcC-CCcHHHHHHHHHHHHHHcCCCh-HHhccCCcccCCHHHHHH----HHHHHHHhcCCCEEEEeCCCccC
Confidence 66654322111 0011111223344444455655 33333 58999999999 99999999999998 99999
Q ss_pred CHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 370 PDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 370 D~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
|+.++ .+..+|+++.+. ..++...|++.....+++.+.+++.|++++.++.
T Consensus 173 D~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 224 (227)
T cd03260 173 DPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPT 224 (227)
T ss_pred CHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCc
Confidence 99999 999999999777 7788888999887777778888888888766543
No 71
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.86 E-value=7e-22 Score=194.69 Aligned_cols=190 Identities=11% Similarity=0.046 Sum_probs=140.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce----eeecCeEEEEeCCCccCCCCcccHHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT----LIISEKLVLCDCPGLVFPSFSISRYDMVA 299 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~----~~~~~~i~l~d~pg~~~p~~~~~~~e~v~ 299 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|....... ...+..++|+.+...+++.+ ++.+++.
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~--tv~~~l~ 101 (243)
T TIGR02315 24 NINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERL--TVLENVL 101 (243)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccc--cHHHHHh
Confidence 477899999999999999999999999986 799999987542211 11345688888876677766 5566665
Q ss_pred hccCCcc----hh--hhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCC
Q 010472 300 SGVLPID----RM--TEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGL 369 (509)
Q Consensus 300 ~g~~~~~----~~--~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGL 369 (509)
.+..... .. .........+.+.+..+++.. +....+..||+||+|| ++||+||+.+|+++ ||+||
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qr----v~la~al~~~p~llllDEPt~~L 176 (243)
T TIGR02315 102 HGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD-KAYQRADQLSGGQQQR----VAIARALAQQPDLILADEPIASL 176 (243)
T ss_pred hcccccccchhhhhccccHHHHHHHHHHHHHcCcHh-hhcCCcccCCHHHHHH----HHHHHHHhcCCCEEEEeCCcccC
Confidence 5432110 00 001112233444555556765 5567788999999999 99999999999998 99999
Q ss_pred CHHHH-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 370 PDETR-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 370 D~~~r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
|+.++ .+..+|+++.+ .+.+++..+|++.....+++.+.+++.|++++.++.+
T Consensus 177 D~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 231 (243)
T TIGR02315 177 DPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPS 231 (243)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHH
Confidence 99999 99999999864 4567788888888876667777888888888765443
No 72
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=6.3e-22 Score=194.68 Aligned_cols=190 Identities=12% Similarity=0.045 Sum_probs=139.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce----eeecCeEEEEeCCCccCCCCcccHHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT----LIISEKLVLCDCPGLVFPSFSISRYDMVA 299 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~----~~~~~~i~l~d~pg~~~p~~~~~~~e~v~ 299 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|....... ......++|+.+...+|+.+ ++.+++.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--tv~~~l~ 100 (241)
T cd03256 23 SINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERL--SVLENVL 100 (241)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccC--cHHHHHH
Confidence 478999999999999999999999999976 799999987543211 12345688888876677766 5566665
Q ss_pred hccCCcc----hhh--hHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCC
Q 010472 300 SGVLPID----RMT--EHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGL 369 (509)
Q Consensus 300 ~g~~~~~----~~~--~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGL 369 (509)
.+..... ... ........+.+.+..+++.. +....+..||+||+|| ++||+||+.+|.++ ||+||
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----v~la~al~~~p~llllDEPt~~L 175 (241)
T cd03256 101 SGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD-KAYQRADQLSGGQQQR----VAIARALMQQPKLILADEPVASL 175 (241)
T ss_pred hhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChh-hhCCCcccCCHHHHHH----HHHHHHHhcCCCEEEEeCccccC
Confidence 4322100 000 00112233444455556665 5567788999999999 99999999999998 99999
Q ss_pred CHHHH-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 370 PDETR-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 370 D~~~r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
|+.++ .+..+|+++.+ .+.+++...|++.....+++.+.+++.|++++.++.+
T Consensus 176 D~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 230 (241)
T cd03256 176 DPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPA 230 (241)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHH
Confidence 99999 99999999864 3567888888988888777788888888887765443
No 73
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=9.9e-22 Score=192.57 Aligned_cols=189 Identities=13% Similarity=0.124 Sum_probs=141.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|+++||+|+||+|||||+++|+|+.. .|.+.+.|........ ....++|+.+...+|+.+ +..+++..+..
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~i~~~~q~~~~~~~~--tv~e~l~~~~~ 97 (232)
T PRK10771 21 TVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP-SRRPVSMLFQENNLFSHL--TVAQNIGLGLN 97 (232)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh-hhccEEEEecccccccCC--cHHHHHhcccc
Confidence 467899999999999999999999999977 7999999875432111 234688888876677766 55666654432
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
+..... ......+.+.+..+++.. +....+..||+||+|| +.||+|++.+|.++ |++|||..++ .+..
T Consensus 98 ~~~~~~--~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----v~laral~~~p~lllLDEP~~gLD~~~~~~~~~ 170 (232)
T PRK10771 98 PGLKLN--AAQREKLHAIARQMGIED-LLARLPGQLSGGQRQR----VALARCLVREQPILLLDEPFSALDPALRQEMLT 170 (232)
T ss_pred cccCCC--HHHHHHHHHHHHHcCcHH-HHhCCcccCCHHHHHH----HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 210011 112233445555566776 6778889999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 379 ILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 379 lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
+|+++.+ .+..++...|++.....+++.+..+..|++++.++.+..
T Consensus 171 ~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 217 (232)
T PRK10771 171 LVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDEL 217 (232)
T ss_pred HHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999865 356677788888887777778888888888876654433
No 74
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.86 E-value=9.9e-22 Score=189.84 Aligned_cols=183 Identities=15% Similarity=0.121 Sum_probs=135.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|....... .....++++.+...+++.+ +..+++..+..
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~-~~~~~i~~~~q~~~~~~~~--tv~~~l~~~~~ 98 (213)
T cd03301 22 DIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLP-PKDRDIAMVFQNYALYPHM--TVYDNIAFGLK 98 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC-cccceEEEEecChhhccCC--CHHHHHHHHHH
Confidence 467999999999999999999999999976 799999887543211 1124688888876676665 45566544321
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
.. .. ........+.+.+..+++.. +....+..||+||+|| ++||+||+.+|.++ |++|||+.++ .+..
T Consensus 99 ~~-~~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----~~laral~~~p~llllDEPt~~LD~~~~~~l~~ 171 (213)
T cd03301 99 LR-KV-PKDEIDERVREVAELLQIEH-LLDRKPKQLSGGQRQR----VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRA 171 (213)
T ss_pred hc-CC-CHHHHHHHHHHHHHHcCCHH-HHhCChhhCCHHHHHH----HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 10 01 11122233444455556765 5677788999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccC
Q 010472 379 ILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHES 418 (509)
Q Consensus 379 lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~ 418 (509)
+|+++.. .+.+++...|++.....+++.+.+++.|++++.
T Consensus 172 ~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~ 212 (213)
T cd03301 172 ELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQI 212 (213)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence 9999875 356677777888887776667777777877654
No 75
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=6e-22 Score=208.38 Aligned_cols=206 Identities=13% Similarity=0.067 Sum_probs=152.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce-ee----ecCeEEEEeCCCccCCCCcccHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT-LI----ISEKLVLCDCPGLVFPSFSISRYDMV 298 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~-~~----~~~~i~l~d~pg~~~p~~~~~~~e~v 298 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|....... .. .+..++|+.|...+||.+ ++.+++
T Consensus 50 ~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~--Tv~enl 127 (400)
T PRK10070 50 AIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM--TVLDNT 127 (400)
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC--CHHHHH
Confidence 578999999999999999999999999986 799999997543211 11 134688998887788877 556666
Q ss_pred HhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 299 ASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 299 ~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
..+.... .. ........+.+.+..++|.. +..+.+..|||||+|| +.||+||+.+|.+| ||+|||+..+
T Consensus 128 ~~~~~~~-~~-~~~~~~~~~~e~L~~~gL~~-~~~~~~~~LSgGq~QR----v~LArAL~~~P~iLLLDEPts~LD~~~r 200 (400)
T PRK10070 128 AFGMELA-GI-NAEERREKALDALRQVGLEN-YAHSYPDELSGGMRQR----VGLARALAINPDILLMDEAFSALDPLIR 200 (400)
T ss_pred HHHHHhc-CC-CHHHHHHHHHHHHHHcCCCh-hhhcCcccCCHHHHHH----HHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence 5542110 01 11122234455555566766 6678899999999999 99999999999998 9999999999
Q ss_pred -HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhccC
Q 010472 375 -AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDDL 444 (509)
Q Consensus 375 -~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (509)
.+..+|+++.. .+.+++..+|+++....+++.+++++.|+++..++.+...... ..+.+++++.+.
T Consensus 201 ~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~----~~~~v~~~~~~~ 268 (400)
T PRK10070 201 TEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNP----ANDYVRTFFRGV 268 (400)
T ss_pred HHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCc----ccHHHHHHHhcc
Confidence 99999999864 4667888889999988888888899999998766544332211 124566666654
No 76
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.1e-21 Score=189.33 Aligned_cols=182 Identities=14% Similarity=0.123 Sum_probs=136.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|....... ..+..++|+.+...+|+.+ +..+++..+..
T Consensus 20 ~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~-~~~~~i~~~~q~~~~~~~~--tv~enl~~~~~ 96 (211)
T cd03298 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAP-PADRPVSMLFQENNLFAHL--TVEQNVGLGLS 96 (211)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCC-HhHccEEEEecccccCCCC--cHHHHHhcccc
Confidence 477999999999999999999999999986 799999886542211 1235688888877777766 55666655432
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
...... ......+.+.+..+++.. +....+..||+||+|| +.||+|++.+|+++ |++|||+.++ .+..
T Consensus 97 ~~~~~~--~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----v~ia~al~~~p~llllDEP~~~LD~~~~~~l~~ 169 (211)
T cd03298 97 PGLKLT--AEDRQAIEVALARVGLAG-LEKRLPGELSGGERQR----VALARVLVRDKPVLLLDEPFAALDPALRAEMLD 169 (211)
T ss_pred cccCcc--HHHHHHHHHHHHHcCCHH-HHhCCcccCCHHHHHH----HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 110100 111223444444556665 5567788999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhc-CCccEEEcCCCCChhhccchhhHhhccccccc
Q 010472 379 ILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHE 417 (509)
Q Consensus 379 lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~ 417 (509)
+|+.+.. .+.+++..+|++.....+++.+.+++.|++++
T Consensus 170 ~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 170 LVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA 209 (211)
T ss_pred HHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEee
Confidence 9999864 35677778899888877677788888888764
No 77
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.86 E-value=1.1e-21 Score=202.24 Aligned_cols=213 Identities=12% Similarity=0.057 Sum_probs=157.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-----ceEEeeCCcccccce-e---ee-cCeEEEEeCCC--ccCCCCccc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-----TGVTSTPGKTKHFQT-L---II-SEKLVLCDCPG--LVFPSFSIS 293 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-----~g~~~~~G~t~~~~~-~---~~-~~~i~l~d~pg--~~~p~~~~~ 293 (509)
++.+|+++||+|+||||||||+++|+|+.. .|.+.+.|....... . .+ ...++|+.|.. .++|.++
T Consensus 38 ~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~-- 115 (330)
T PRK09473 38 SLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMR-- 115 (330)
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCC--
Confidence 478999999999999999999999999984 688999987542211 1 11 24688888865 4566663
Q ss_pred HHHHHHhccCCcchhhhHHHHHHHHHHhCCccchhh--HhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCC
Q 010472 294 RYDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIEN--VCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASS 367 (509)
Q Consensus 294 ~~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~--~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----Pts 367 (509)
..+++...+...... ...+....+.+.+..++|.+ .+....+..|||||+|| +.||+||+.+|++| ||+
T Consensus 116 v~~~i~~~~~~~~~~-~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QR----v~IArAL~~~P~llilDEPts 190 (330)
T PRK09473 116 VGEQLMEVLMLHKGM-SKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQR----VMIAMALLCRPKLLIADEPTT 190 (330)
T ss_pred HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHH----HHHHHHHHcCCCEEEEeCCCc
Confidence 344443322110001 11222334444444445542 13456789999999999 99999999999998 999
Q ss_pred CCCHHHH-HHHHHHHHhhcC-CccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhccCC
Q 010472 368 GLPDETR-AARIILKDFIDG-KLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDDLS 445 (509)
Q Consensus 368 GLD~~~r-~~~~lLkd~~~g-kl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (509)
|||...+ .+..+|+++.+. ++.++..+|++......++.+++++.|++++.++.+....... .|+.+.++++++
T Consensus 191 ~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~~~p~----~pyt~~l~~~~~ 266 (330)
T PRK09473 191 ALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPS----HPYSIGLLNAVP 266 (330)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCC----CHHHHHHHHhCC
Confidence 9999999 999999999763 6889999999999988888999999999999888776655433 388999999887
Q ss_pred Cccc
Q 010472 446 SFDL 449 (509)
Q Consensus 446 ~~~~ 449 (509)
.++.
T Consensus 267 ~~~~ 270 (330)
T PRK09473 267 RLDA 270 (330)
T ss_pred Cccc
Confidence 6653
No 78
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.86 E-value=8.6e-22 Score=205.00 Aligned_cols=187 Identities=13% Similarity=0.083 Sum_probs=143.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc-----eeeecCeEEEEeCCCccCCCCcccHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ-----TLIISEKLVLCDCPGLVFPSFSISRYDMV 298 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~-----~~~~~~~i~l~d~pg~~~p~~~~~~~e~v 298 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|...... ....+..++|+.|...+||.+ ++.+++
T Consensus 19 ~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~--tv~enl 96 (354)
T TIGR02142 19 TLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHL--SVRGNL 96 (354)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCC--cHHHHH
Confidence 467899999999999999999999999986 79999998654321 112345688988877788877 566777
Q ss_pred HhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 299 ASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 299 ~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
..+..... .......+.+.+..++|.. +..+.+..|||||+|| ++||+||+.+|.++ |++|||+..+
T Consensus 97 ~~~~~~~~----~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGqkqR----valAraL~~~p~lllLDEPts~LD~~~~ 167 (354)
T TIGR02142 97 RYGMKRAR----PSERRISFERVIELLGIGH-LLGRLPGRLSGGEKQR----VAIGRALLSSPRLLLMDEPLAALDDPRK 167 (354)
T ss_pred HHHhhccC----hhHHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHH----HHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 65532111 1111223444555556766 6678889999999999 99999999999998 9999999999
Q ss_pred -HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 375 -AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 375 -~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
.++.+|+++.+ .+.+++..+|++.....+++.+++++.|+++..++.+.
T Consensus 168 ~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 218 (354)
T TIGR02142 168 YEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAE 218 (354)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHH
Confidence 99999999875 36678888899988887778888888899887655443
No 79
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.86 E-value=1e-21 Score=191.45 Aligned_cols=185 Identities=15% Similarity=0.120 Sum_probs=132.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce----eeecCeEEEEeCCC--ccCCCCcccHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT----LIISEKLVLCDCPG--LVFPSFSISRYDM 297 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~----~~~~~~i~l~d~pg--~~~p~~~~~~~e~ 297 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|....... ...+..++|+.+.. .+++.+ ++.++
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~--tv~~n 104 (228)
T cd03257 27 SIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRM--TIGEQ 104 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcC--CHHHH
Confidence 467899999999999999999999999976 799999887543211 12345688888765 344455 45566
Q ss_pred HHhccCCcchhhhHHHHHHH-HHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHH
Q 010472 298 VASGVLPIDRMTEHRQAVQV-VANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDE 372 (509)
Q Consensus 298 v~~g~~~~~~~~~~~~~~~~-i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~ 372 (509)
+..+......... ...... +.+.+..+++...+....+..||+||+|| +.||+||+.+|.++ ||+|||+.
T Consensus 105 l~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qr----v~laral~~~p~lllLDEPt~~LD~~ 179 (228)
T cd03257 105 IAEPLRIHGKLSK-KEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQR----VAIARALALNPKLLIADEPTSALDVS 179 (228)
T ss_pred HHHHHHhccCCcH-HHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHH----HHHHHHHhcCCCEEEecCCCCCCCHH
Confidence 5443211100001 111111 12344444563224566788999999999 99999999999998 99999999
Q ss_pred HH-HHHHHHHHhhcC-CccEEEcCCCCChhhccchhhHhhccccccc
Q 010472 373 TR-AARIILKDFIDG-KLPHFEMPPGMSHEEVGMEDTQASSLLELHE 417 (509)
Q Consensus 373 ~r-~~~~lLkd~~~g-kl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~ 417 (509)
++ .+..+|+++.+. +.+++...|++.....+++.+.+++.|++++
T Consensus 180 ~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 180 VQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 99 999999998753 5677888888888887777778888888754
No 80
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.86 E-value=6.5e-22 Score=190.53 Aligned_cols=178 Identities=13% Similarity=0.142 Sum_probs=133.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|...... ......++++.+...+++.. +..+++..+..
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~i~~~~q~~~~~~~~--tv~e~l~~~~~ 98 (208)
T cd03268 22 HVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN-IEALRRIGALIEAPGFYPNL--TARENLRLLAR 98 (208)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch-HHHHhhEEEecCCCccCccC--cHHHHHHHHHH
Confidence 467899999999999999999999999976 89999998754321 12344688888876677766 55566544321
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
... . . ... +.+.+..+++.. +....+..||+||+|| ++||+|++.+|.++ ||+|||+.++ .+..
T Consensus 99 ~~~-~-~-~~~---~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----v~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 167 (208)
T cd03268 99 LLG-I-R-KKR---IDEVLDVVGLKD-SAKKKVKGFSLGMKQR----LGIALALLGNPDLLILDEPTNGLDPDGIKELRE 167 (208)
T ss_pred hcC-C-c-HHH---HHHHHHHcCCHH-HHhhhHhhCCHHHHHH----HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHH
Confidence 111 0 1 122 233334445655 4556678899999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhcCCccEEEcCCCCChhhccchhhHhhccccccc
Q 010472 379 ILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHE 417 (509)
Q Consensus 379 lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~ 417 (509)
+|+++.+.+.+++..+|+......+++.+.+++.|++++
T Consensus 168 ~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~ 206 (208)
T cd03268 168 LILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE 206 (208)
T ss_pred HHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 999987644567777899888877777888888888764
No 81
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=6.5e-22 Score=193.80 Aligned_cols=187 Identities=18% Similarity=0.150 Sum_probs=138.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce----eeecCeEEEEeCCCccCCCCcccHHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT----LIISEKLVLCDCPGLVFPSFSISRYDMVA 299 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~----~~~~~~i~l~d~pg~~~p~~~~~~~e~v~ 299 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|....... ......++|+++...+|+.+ +..+++.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--t~~e~l~ 104 (233)
T cd03258 27 SVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR--TVFENVA 104 (233)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCC--cHHHHHH
Confidence 478999999999999999999999999987 799999987543211 11245688888877777766 4555554
Q ss_pred hccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-
Q 010472 300 SGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR- 374 (509)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r- 374 (509)
.+.... .. ........+.+.+..+++.. +....+..||+||+|| ++||+||+.+|.++ |++|||+.++
T Consensus 105 ~~~~~~-~~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----v~la~al~~~p~lllLDEP~~~LD~~~~~ 177 (233)
T cd03258 105 LPLEIA-GV-PKAEIEERVLELLELVGLED-KADAYPAQLSGGQKQR----VGIARALANNPKVLLCDEATSALDPETTQ 177 (233)
T ss_pred HHHHHc-CC-CHHHHHHHHHHHHHHCCChh-hhhcChhhCCHHHHHH----HHHHHHHhcCCCEEEecCCCCcCCHHHHH
Confidence 432110 01 11112223444455556665 5567788999999999 99999999999998 9999999999
Q ss_pred HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 375 AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 375 ~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
.+..+|+++.+ ++.+++...|.......+++.+.+++.|++++.++.
T Consensus 178 ~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 225 (233)
T cd03258 178 SILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTV 225 (233)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 99999999865 366778888888887777778888888888765543
No 82
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=8.8e-22 Score=185.23 Aligned_cols=203 Identities=12% Similarity=0.103 Sum_probs=153.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc-eeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ-TLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~-~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
.+.+|++++|+||||+|||||++.|+|... .|.+.+.|...+.- ...+...-.+++|...+ .|+.++.+.+..|.
T Consensus 23 ~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~l--aFpFtv~eVV~mGr 100 (259)
T COG4559 23 DLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSL--AFPFTVQEVVQMGR 100 (259)
T ss_pred eccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCccc--ccceEHHHHHHhcc
Confidence 367899999999999999999999999876 78999999775432 22223344555554433 23337888999999
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCC------ce----eCCCCCHH
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRG------YV----ASSGLPDE 372 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~------lL----PtsGLD~~ 372 (509)
.|.....+..+..+.+...+...++.. +..+....||||++|| +.|||.||+-.. +| ||+.||..
T Consensus 101 ~p~~~g~~~~e~~~i~~~ala~~d~~~-la~R~y~~LSGGEqQR----VqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~ 175 (259)
T COG4559 101 IPHRSGREPEEDERIAAQALAATDLSG-LAGRDYRTLSGGEQQR----VQLARVLAQLWPPVPSGRWLFLDEPTSALDIA 175 (259)
T ss_pred cccccCCCchhhHHHHHHHHHHcChhh-hhccchhhcCchHHHH----HHHHHHHHHccCCCCCCceEEecCCccccchH
Confidence 887543333233333344444445555 5556677899999999 999999998543 33 99999999
Q ss_pred HH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhc
Q 010472 373 TR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLD 442 (509)
Q Consensus 373 ~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (509)
.+ ....+.+++...+...+..-|+++-+...+|.+.+|..|+++..++.+..=. +++++.+++
T Consensus 176 HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt-------~Etl~~vyg 239 (259)
T COG4559 176 HQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLT-------DETLERVYG 239 (259)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcC-------HHHHHHHhC
Confidence 99 9999999998877889999999999888888888888888888877765543 378999998
No 83
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=7.6e-22 Score=205.18 Aligned_cols=186 Identities=14% Similarity=0.086 Sum_probs=145.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc-----eeeecCeEEEEeCCCccCCCCcccHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ-----TLIISEKLVLCDCPGLVFPSFSISRYDMV 298 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~-----~~~~~~~i~l~d~pg~~~p~~~~~~~e~v 298 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|...... .......++|++|...+||.+ ++.+++
T Consensus 20 ~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~--tv~enl 97 (352)
T PRK11144 20 TLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHY--KVRGNL 97 (352)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCC--cHHHHH
Confidence 467899999999999999999999999976 79999988654211 112245789999988888877 566777
Q ss_pred HhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 299 ASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 299 ~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
..+... ... ..+.+.+..++|.. +..+.+..|||||+|| ++||+||+.+|+++ |++|||...+
T Consensus 98 ~~~~~~-----~~~---~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qR----valaraL~~~p~llLLDEPts~LD~~~~ 164 (352)
T PRK11144 98 RYGMAK-----SMV---AQFDKIVALLGIEP-LLDRYPGSLSGGEKQR----VAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred Hhhhhh-----hhH---HHHHHHHHHcCCch-hhhCCcccCCHHHHHH----HHHHHHHHcCCCEEEEcCCcccCCHHHH
Confidence 655321 111 22334444455665 5677889999999999 99999999999998 9999999999
Q ss_pred -HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccC
Q 010472 375 -AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEV 426 (509)
Q Consensus 375 -~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (509)
.++.+|+.+.+ .+.+++..+|++.+...+++.+++++.|+++..++.+....
T Consensus 165 ~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~ 218 (352)
T PRK11144 165 RELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWA 218 (352)
T ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 99999999875 36778888999988888888899999999988776655543
No 84
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.86 E-value=9.9e-22 Score=189.96 Aligned_cols=179 Identities=14% Similarity=0.093 Sum_probs=130.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce----eeecCeEEEEeCCCccCCCCcccHHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT----LIISEKLVLCDCPGLVFPSFSISRYDMVA 299 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~----~~~~~~i~l~d~pg~~~p~~~~~~~e~v~ 299 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|....... ......++|+.+...+|+.+ +..+++.
T Consensus 24 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--tv~~~l~ 101 (214)
T TIGR02673 24 HIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDR--TVYENVA 101 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCC--cHHHHHH
Confidence 477899999999999999999999999976 899999886543211 11345688888876777766 4555554
Q ss_pred hccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-
Q 010472 300 SGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR- 374 (509)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r- 374 (509)
.+..... . ........+.+.+..+++.. +....+..||+||+|| ++||+||+.+|.++ ||+|||+.++
T Consensus 102 ~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----l~la~al~~~p~lllLDEPt~~LD~~~~~ 174 (214)
T TIGR02673 102 LPLEVRG-K-KEREIQRRVGAALRQVGLEH-KADAFPEQLSGGEQQR----VAIARAIVNSPPLLLADEPTGNLDPDLSE 174 (214)
T ss_pred HHHHHcC-C-CHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHH----HHHHHHHhCCCCEEEEeCCcccCCHHHHH
Confidence 4321100 0 11111223444445555665 5567788999999999 99999999999998 9999999999
Q ss_pred HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhccc
Q 010472 375 AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLL 413 (509)
Q Consensus 375 ~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~ 413 (509)
.+..+|+++.+.+.+++..+|.......+++.+.+++.|
T Consensus 175 ~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 175 RILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDG 213 (214)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCC
Confidence 999999998764556777788888877666666665554
No 85
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2e-21 Score=216.32 Aligned_cols=214 Identities=15% Similarity=0.049 Sum_probs=160.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce----eeecCeEEEEeCCC--ccCCCCcccHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT----LIISEKLVLCDCPG--LVFPSFSISRYDM 297 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~----~~~~~~i~l~d~pg--~~~p~~~~~~~e~ 297 (509)
++.+|+++||+|+||||||||+++|+|+.+ .|.+.+.|....... ..++..++|++|.. .++|.+ ++.++
T Consensus 346 ~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~--tv~~~ 423 (623)
T PRK10261 346 DLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQ--TVGDS 423 (623)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCC--CHHHH
Confidence 578999999999999999999999999986 799999987542211 11345688988865 466766 55565
Q ss_pred HHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHH
Q 010472 298 VASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDET 373 (509)
Q Consensus 298 v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~ 373 (509)
+..++... ...........+.+.+..++|...+..+.+..|||||+|| +.||+||+.+|++| ||+|||...
T Consensus 424 l~~~~~~~-~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQR----v~iAraL~~~p~llllDEPts~LD~~~ 498 (623)
T PRK10261 424 IMEPLRVH-GLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQR----ICIARALALNPKVIIADEAVSALDVSI 498 (623)
T ss_pred HHHHHHHc-CCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHH----HHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 54432110 0001112223455555566674225677899999999999 99999999999998 999999999
Q ss_pred H-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhccCCCcccc
Q 010472 374 R-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDDLSSFDLA 450 (509)
Q Consensus 374 r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (509)
+ .+.++|+++.+ .+..++..+|++.....+++.+++++.|++++.++.+....... .|..+.++++++..|+.
T Consensus 499 ~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~----~~~~~~l~~~~~~~~~~ 573 (623)
T PRK10261 499 RGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQ----HPYTRKLMAAVPVADPS 573 (623)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCC----CHHHHHHHhhCCCCCcc
Confidence 9 99999999975 46789999999999998888999999999998777665543322 37888999988877754
No 86
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.2e-21 Score=188.94 Aligned_cols=180 Identities=13% Similarity=0.103 Sum_probs=133.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|..... .....++|+.+...+++.+ +..+++.....
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~---~~~~~i~~~~q~~~~~~~~--tv~e~l~~~~~ 96 (210)
T cd03269 22 SVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI---AARNRIGYLPEERGLYPKM--KVIDQLVYLAQ 96 (210)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH---HHHccEEEeccCCcCCcCC--cHHHHHHHHHH
Confidence 477999999999999999999999999976 7999999865432 2344688888877777766 44555443211
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
.. .. ........+.+.+..+++.. +....+..||+||+|| +.||+|++.+|+++ |++|||+.++ .+..
T Consensus 97 ~~-~~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----l~la~al~~~p~~lllDEP~~~LD~~~~~~~~~ 169 (210)
T cd03269 97 LK-GL-KKEEARRRIDEWLERLELSE-YANKRVEELSKGNQQK----VQFIAAVIHDPELLILDEPFSGLDPVNVELLKD 169 (210)
T ss_pred Hc-CC-ChHHHHHHHHHHHHHcCChH-HHhCcHhhCCHHHHHH----HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 00 00 01112233444455556665 4556778999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhcCCccEEEcCCCCChhhccchhhHhhccccccc
Q 010472 379 ILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHE 417 (509)
Q Consensus 379 lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~ 417 (509)
+|+.+.+.+.+++...|.......+++.+.++..|++++
T Consensus 170 ~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 170 VIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred HHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence 999987645677888888888776667777777777764
No 87
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=9.7e-22 Score=192.71 Aligned_cols=179 Identities=15% Similarity=0.122 Sum_probs=153.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|+++||||.+|||||||-++|+|+.. .|.+.+.|.......
T Consensus 35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--------------------------------- 81 (268)
T COG4608 35 SIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--------------------------------- 81 (268)
T ss_pred EEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc---------------------------------
Confidence 578999999999999999999999999987 788988886521110
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
.....+.+.+.+..+++...+..++|+++||||+|| +.|||||+.+|.++ |+++||...+ .+.+
T Consensus 82 -------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQR----i~IARALal~P~liV~DEpvSaLDvSiqaqIln 150 (268)
T COG4608 82 -------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQR----IGIARALALNPKLIVADEPVSALDVSVQAQILN 150 (268)
T ss_pred -------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhh----HHHHHHHhhCCcEEEecCchhhcchhHHHHHHH
Confidence 112334455566666676657789999999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhccCCCcccccc
Q 010472 379 ILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDDLSSFDLANG 452 (509)
Q Consensus 379 lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (509)
+|+++.+ -++.+++..|++....+.++++++|+.|+|++.++++.......+ |+.+.++++.+..|+...
T Consensus 151 LL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~H----pYTk~Ll~a~p~~~p~~~ 221 (268)
T COG4608 151 LLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLH----PYTKALLSAVPVPDPRLR 221 (268)
T ss_pred HHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCC----HHHHHHHHhCCccchhhh
Confidence 9999987 589999999999999999999999999999999999888876554 999999999998887444
No 88
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=9.2e-22 Score=189.89 Aligned_cols=181 Identities=12% Similarity=0.081 Sum_probs=133.5
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+| +++|+|+||||||||+++|+|+.+ .|.+.+.|.............++++.+...+|+.+ ++.+++.....
T Consensus 22 ~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~--tv~~~l~~~~~ 98 (211)
T cd03264 22 TLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNF--TVREFLDYIAW 98 (211)
T ss_pred EEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccC--CHHHHHHHHHH
Confidence 46678 999999999999999999999976 79999988654221122345688888876677766 45555543211
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
.. .. ........+.+.+..++|.. +....+..||+||+|| +.||+||+.+|.++ ||+|||+.++ .+.+
T Consensus 99 ~~-~~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----v~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 171 (211)
T cd03264 99 LK-GI-PSKEVKARVDEVLELVNLGD-RAKKKIGSLSGGMRRR----VGIAQALVGDPSILIVDEPTAGLDPEERIRFRN 171 (211)
T ss_pred Hh-CC-CHHHHHHHHHHHHHHCCCHH-HHhCchhhCCHHHHHH----HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 00 00 01111223444455556665 5567788999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhcCCccEEEcCCCCChhhccchhhHhhccccccc
Q 010472 379 ILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHE 417 (509)
Q Consensus 379 lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~ 417 (509)
+|+++.++ .+++...|+......+++.+.+++.|++++
T Consensus 172 ~l~~~~~~-~tii~vsH~~~~~~~~~d~i~~l~~g~i~~ 209 (211)
T cd03264 172 LLSELGED-RIVILSTHIVEDVESLCNQVAVLNKGKLVF 209 (211)
T ss_pred HHHHHhCC-CEEEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999876 677888899888877677778888887764
No 89
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.86 E-value=3e-20 Score=173.77 Aligned_cols=165 Identities=37% Similarity=0.509 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCeEEEee
Q 010472 69 LDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWS 148 (509)
Q Consensus 69 le~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~gi~~if~S 148 (509)
..+++|++..++++|+||+|+|+++|+......+..+ ..++++|+|+||+||++.+....|.+||...+..++++|
T Consensus 7 ~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~----~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iS 82 (171)
T cd01856 7 AKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKI----LGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVN 82 (171)
T ss_pred HHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhH----hcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEE
Confidence 4699999999999999999999999997665433222 246899999999999988766789999988777778888
Q ss_pred hhhhHHhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccccccCccCC
Q 010472 149 AKAASAALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVDESFAGNVAP 228 (509)
Q Consensus 149 a~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~ 228 (509)
++ .+. +.++|.+.+......+...+. ....+
T Consensus 83 a~------~~~-----------------------gi~~L~~~l~~~l~~~~~~~~--------------------~~~~~ 113 (171)
T cd01856 83 AK------SGK-----------------------GVKKLLKAAKKLLKDIEKLKA--------------------KGLLP 113 (171)
T ss_pred CC------Ccc-----------------------cHHHHHHHHHHHHHHHhhhhh--------------------cccCC
Confidence 75 222 345666665543221111000 01123
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeecCeEEEEeCCCcc
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGLV 286 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~ 286 (509)
.+..++++|.+|+|||||+|.|.+.....+...+|+|...+...+...+.++||||++
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~iDtpG~~ 171 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKISPGIYLLDTPGIL 171 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEecCCEEEEECCCCC
Confidence 4568999999999999999999997666677788999887776666678999999974
No 90
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.85 E-value=9.1e-22 Score=194.79 Aligned_cols=190 Identities=12% Similarity=0.107 Sum_probs=138.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce---------eeecCeEEEEeCCCccCCCCcccH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT---------LIISEKLVLCDCPGLVFPSFSISR 294 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~---------~~~~~~i~l~d~pg~~~p~~~~~~ 294 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|....... ...+..++|+.+...++|.. +.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~--tv 102 (250)
T PRK11264 25 EVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHR--TV 102 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCC--CH
Confidence 467999999999999999999999999976 788988886543210 12345688888876677665 45
Q ss_pred HHHHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 295 YDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 295 ~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
.+++..+....... ........+.+.+..++|.. +....+..||+||+|| +.||+||+.+|.++ ||+|||
T Consensus 103 ~e~l~~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~Gq~qr----v~la~al~~~p~lllLDEPt~~LD 176 (250)
T PRK11264 103 LENIIEGPVIVKGE-PKEEATARARELLAKVGLAG-KETSYPRRLSGGQQQR----VAIARALAMRPEVILFDEPTSALD 176 (250)
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCcc-hhhCChhhCChHHHHH----HHHHHHHhcCCCEEEEeCCCccCC
Confidence 56654432100000 11112223334444455655 4566788999999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
..++ .+..+|+++.+.+..++..+|+......+++.+.++..|++++.++.+.
T Consensus 177 ~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 230 (250)
T PRK11264 177 PELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKA 230 (250)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999 9999999987645567777888888877777888888888877655543
No 91
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.85 E-value=7.8e-22 Score=189.65 Aligned_cols=176 Identities=11% Similarity=0.047 Sum_probs=129.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCc-cCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGL-VFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~-~~p~~~~~~~e~v~~g~ 302 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|..... ......++|+.+... .+... +..+++..+.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~i~~~~q~~~~~~~~~--tv~e~l~~~~ 97 (205)
T cd03226 22 DLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA--KERRKSIGYVMQDVDYQLFTD--SVREELLLGL 97 (205)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh--HHhhcceEEEecChhhhhhhc--cHHHHHhhhh
Confidence 467899999999999999999999999976 7999998865422 123346788877642 22223 5666665432
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHH
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AAR 377 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~ 377 (509)
.... ... ..+.+.+..++|.+ +....+..||+||+|| +.||+||+.+|.++ |++|||+..+ .+.
T Consensus 98 ~~~~---~~~---~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----v~laral~~~p~llllDEPt~~LD~~~~~~l~ 166 (205)
T cd03226 98 KELD---AGN---EQAETVLKDLDLYA-LKERHPLSLSGGQKQR----LAIAAALLSGKDLLIFDEPTSGLDYKNMERVG 166 (205)
T ss_pred hhcC---ccH---HHHHHHHHHcCCch-hcCCCchhCCHHHHHH----HHHHHHHHhCCCEEEEeCCCccCCHHHHHHHH
Confidence 1111 111 22334444455665 5677889999999999 99999999999998 9999999999 999
Q ss_pred HHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccc
Q 010472 378 IILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELH 416 (509)
Q Consensus 378 ~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~ 416 (509)
.+|+++.+.+..++..+|++...+.+++.+.+++.|+++
T Consensus 167 ~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 167 ELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999655566777788888877666677777777653
No 92
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.85 E-value=1.2e-21 Score=189.15 Aligned_cols=181 Identities=13% Similarity=0.115 Sum_probs=131.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc---eeeecCeEEEEeCCCccCCCCcccHHHHHHh
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ---TLIISEKLVLCDCPGLVFPSFSISRYDMVAS 300 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~---~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~ 300 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|...... .......++|+.+...+++.+ +..+++..
T Consensus 22 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--t~~e~l~~ 99 (213)
T cd03262 22 TVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHL--TVLENITL 99 (213)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCC--cHHHHHHh
Confidence 467999999999999999999999999976 79999998754211 112345688888877677766 45566544
Q ss_pred ccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-H
Q 010472 301 GVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-A 375 (509)
Q Consensus 301 g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~ 375 (509)
+....... ........+.+.+..+++.. +....+..||+||+|| ++||+|++.+|.++ |++|||..++ .
T Consensus 100 ~~~~~~~~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----v~la~al~~~p~llllDEP~~~LD~~~~~~ 173 (213)
T cd03262 100 APIKVKGM-SKAEAEERALELLEKVGLAD-KADAYPAQLSGGQQQR----VAIARALAMNPKVMLFDEPTSALDPELVGE 173 (213)
T ss_pred HHHHhcCC-CHHHHHHHHHHHHHHcCCHh-HhhhCccccCHHHHHH----HHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence 32100001 11112233444455556665 5567788999999999 99999999999998 9999999999 9
Q ss_pred HHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccc
Q 010472 376 ARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLE 414 (509)
Q Consensus 376 ~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~ 414 (509)
+..+|+++.+.+..++...|+......+++.+.+++.|+
T Consensus 174 l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~ 212 (213)
T cd03262 174 VLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGR 212 (213)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 999999997644567777788888766666666666554
No 93
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=7e-22 Score=199.99 Aligned_cols=190 Identities=14% Similarity=0.095 Sum_probs=140.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce---eeecCeEEEEeCCC-ccCCCCcccHHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT---LIISEKLVLCDCPG-LVFPSFSISRYDMVA 299 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~---~~~~~~i~l~d~pg-~~~p~~~~~~~e~v~ 299 (509)
++.+|+++||+|+||||||||+++|+|+.. .|.+.+.|....... ...+..++|+.|.. ..+ +..++.+++.
T Consensus 29 ~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~--~~~tv~e~l~ 106 (287)
T PRK13637 29 EIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL--FEETIEKDIA 106 (287)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcc--ccccHHHHHH
Confidence 477999999999999999999999999986 799999997653211 12345788888853 222 2236677776
Q ss_pred hccCCcchhhhHHHHHHHHHHhCCccchh--hHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHH
Q 010472 300 SGVLPIDRMTEHRQAVQVVANRVPRHVIE--NVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDET 373 (509)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~i~~~l~~~~L~--~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~ 373 (509)
.+..... . ...+....+.+.+..++|. . +....+..|||||+|| +.||+||+.+|.+| ||+|||+..
T Consensus 107 ~~~~~~~-~-~~~~~~~~~~~~l~~~gL~~~~-~~~~~~~~LSgGq~qr----v~iAraL~~~P~llllDEPt~gLD~~~ 179 (287)
T PRK13637 107 FGPINLG-L-SEEEIENRVKRAMNIVGLDYED-YKDKSPFELSGGQKRR----VAIAGVVAMEPKILILDEPTAGLDPKG 179 (287)
T ss_pred hHHHHCC-C-CHHHHHHHHHHHHHHcCCCchh-hccCCcccCCHHHHHH----HHHHHHHHcCCCEEEEECCccCCCHHH
Confidence 5432111 1 1112223344455555664 3 5567788999999999 99999999999998 999999999
Q ss_pred H-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 374 R-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 374 r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
+ .++.+|+++.+ .+.+++..+|++.....+++.+++++.|++++.++.+..
T Consensus 180 ~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13637 180 RDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232 (287)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9 99999999975 367888889999888776777788888888876655443
No 94
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.85 E-value=1e-21 Score=205.39 Aligned_cols=207 Identities=12% Similarity=0.049 Sum_probs=154.0
Q ss_pred ccCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccc--cc---ce---eee-cCeEEEEeCCCccCCCCccc
Q 010472 225 NVAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTK--HF---QT---LII-SEKLVLCDCPGLVFPSFSIS 293 (509)
Q Consensus 225 ~~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~--~~---~~---~~~-~~~i~l~d~pg~~~p~~~~~ 293 (509)
-++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|... .. .. ... ...++|++|...+||.+ +
T Consensus 45 f~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~--T 122 (382)
T TIGR03415 45 LDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWL--T 122 (382)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCC--c
Confidence 3578999999999999999999999999987 79999998521 11 10 111 24689999988888877 5
Q ss_pred HHHHHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCC
Q 010472 294 RYDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGL 369 (509)
Q Consensus 294 ~~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGL 369 (509)
+.+++..+.... .. ........+.+.+..++|.. +....+..|||||+|| +.||+||+.+|.+| |++||
T Consensus 123 v~eNi~~~~~~~-g~-~~~~~~~~a~e~le~vgL~~-~~~~~~~~LSgGq~QR----V~LARALa~~P~ILLlDEPts~L 195 (382)
T TIGR03415 123 VEENVAFGLEMQ-GM-PEAERRKRVDEQLELVGLAQ-WADKKPGELSGGMQQR----VGLARAFAMDADILLMDEPFSAL 195 (382)
T ss_pred HHHHHHHHHHhc-CC-CHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHH----HHHHHHHhcCCCEEEEECCCccC
Confidence 677776653211 11 11222334555566667766 6778889999999999 99999999999998 99999
Q ss_pred CHHHH-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhccC
Q 010472 370 PDETR-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDDL 444 (509)
Q Consensus 370 D~~~r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (509)
|+..+ .+..+|.++.+ .+.+++..+|+++++..+++.+++++.|++++.++.+....... ....+.++.+.
T Consensus 196 D~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~----~~~~~~~~~~~ 268 (382)
T TIGR03415 196 DPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPA----NDYVADFVAHT 268 (382)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcc----hHHHHHHhccc
Confidence 99999 99999999876 36788888999999888888888999999988766654432211 23455555543
No 95
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.85 E-value=1e-21 Score=190.83 Aligned_cols=185 Identities=13% Similarity=0.146 Sum_probs=134.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce-e-eecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT-L-IISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~-~-~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
++.+|+++||+|+||||||||+++|+|+.+ .|.+.+.|....... . ..+..++|+++...+|+.+ +..+++..+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--t~~~~l~~~ 99 (222)
T cd03224 22 TVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPEL--TVEENLLLG 99 (222)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCC--cHHHHHHHH
Confidence 477999999999999999999999999986 799999886542211 1 1234688888877777766 455665443
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
...... .........+.+.+. .+.. .....+..||+||+|| +.||+||+.+|.++ |++|||+.++ .+
T Consensus 100 ~~~~~~-~~~~~~~~~~l~~~~--~l~~-~~~~~~~~LS~G~~qr----v~laral~~~p~llllDEPt~~LD~~~~~~l 171 (222)
T cd03224 100 AYARRR-AKRKARLERVYELFP--RLKE-RRKQLAGTLSGGEQQM----LAIARALMSRPKLLLLDEPSEGLAPKIVEEI 171 (222)
T ss_pred hhhcCc-hhHHHHHHHHHHHHH--hhhh-hhhCchhhCCHHHHHH----HHHHHHHhcCCCEEEECCCcccCCHHHHHHH
Confidence 221110 111122223333331 2443 4456678899999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCC
Q 010472 377 RIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDA 420 (509)
Q Consensus 377 ~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (509)
..+|+++...+.+++..+|+......+++.+.+++.|++++.++
T Consensus 172 ~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 215 (222)
T cd03224 172 FEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGT 215 (222)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCC
Confidence 99999987655677777888888777777888888888876543
No 96
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.85 E-value=1.2e-21 Score=189.32 Aligned_cols=180 Identities=15% Similarity=0.096 Sum_probs=130.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce----eeecCeEEEEeCCCccCCCCcccHHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT----LIISEKLVLCDCPGLVFPSFSISRYDMVA 299 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~----~~~~~~i~l~d~pg~~~p~~~~~~~e~v~ 299 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|....... ...+..++++.+...+|+.+ +..+++.
T Consensus 23 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~--t~~~~l~ 100 (214)
T cd03292 23 SISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDR--NVYENVA 100 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCC--cHHHHHH
Confidence 467899999999999999999999999976 799999886542211 11345688888876777766 4455554
Q ss_pred hccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-
Q 010472 300 SGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR- 374 (509)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r- 374 (509)
.+..... . ........+.+.+..+++.. +....+..||+||+|| +.||+||+.+|+++ ||+|||+.++
T Consensus 101 ~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----v~laral~~~p~llllDEPt~~LD~~~~~ 173 (214)
T cd03292 101 FALEVTG-V-PPREIRKRVPAALELVGLSH-KHRALPAELSGGEQQR----VAIARAIVNSPTILIADEPTGNLDPDTTW 173 (214)
T ss_pred HHHHHcC-C-CHHHHHHHHHHHHHHcCCHH-HhhCChhhcCHHHHHH----HHHHHHHHcCCCEEEEeCCCCcCCHHHHH
Confidence 4321100 0 11112233444555556765 5567788999999999 99999999999998 9999999999
Q ss_pred HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccc
Q 010472 375 AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLE 414 (509)
Q Consensus 375 ~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~ 414 (509)
.+..+|+++.+.+.+++...|.......+++.+.+++.|+
T Consensus 174 ~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~ 213 (214)
T cd03292 174 EIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGK 213 (214)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 9999999986545577778888877776556666666654
No 97
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.3e-21 Score=191.82 Aligned_cols=183 Identities=14% Similarity=0.104 Sum_probs=134.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccccee----ee-cCeEEEEeCCCccCCCCcccHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTL----II-SEKLVLCDCPGLVFPSFSISRYDMV 298 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~----~~-~~~i~l~d~pg~~~p~~~~~~~e~v 298 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|........ .. ...++|+.|...+|+.+ +..+++
T Consensus 31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~--tv~e~l 108 (233)
T PRK11629 31 SIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDF--TALENV 108 (233)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCC--CHHHHH
Confidence 477899999999999999999999999976 7999999865432111 11 24688988887777776 555555
Q ss_pred HhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 299 ASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 299 ~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
..+.... .. ........+.+.+..++|.+ +....+..||+||+|| ++||+|++.+|+++ ||+|||+.++
T Consensus 109 ~~~~~~~-~~-~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qr----l~la~al~~~p~lllLDEPt~~LD~~~~ 181 (233)
T PRK11629 109 AMPLLIG-KK-KPAEINSRALEMLAAVGLEH-RANHRPSELSGGERQR----VAIARALVNNPRLVLADEPTGNLDARNA 181 (233)
T ss_pred HHHHHhc-CC-CHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHH----HHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 4432100 00 11112223444444556665 4566788999999999 99999999999998 9999999999
Q ss_pred -HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccC
Q 010472 375 -AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHES 418 (509)
Q Consensus 375 -~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~ 418 (509)
.+..+|+++.. .+.+++..+|++...++++ .+.++..|++++.
T Consensus 182 ~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~-~~~~l~~G~i~~~ 226 (233)
T PRK11629 182 DSIFQLLGELNRLQGTAFLVVTHDLQLAKRMS-RQLEMRDGRLTAE 226 (233)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhC-EEEEEECCEEEEE
Confidence 99999999864 4567777788888888876 5567788887653
No 98
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.85 E-value=1.3e-21 Score=194.62 Aligned_cols=191 Identities=13% Similarity=0.143 Sum_probs=140.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc--------------ceeeecCeEEEEeCCCccCCC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF--------------QTLIISEKLVLCDCPGLVFPS 289 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~--------------~~~~~~~~i~l~d~pg~~~p~ 289 (509)
.+.+|++++|+|+||+|||||+++|+|+.. .|.+.+.|..... +.......++|+.+...+++.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 106 (257)
T PRK10619 27 QANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSH 106 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCC
Confidence 467999999999999999999999999976 7999999865421 011224568999988777776
Q ss_pred CcccHHHHHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----e
Q 010472 290 FSISRYDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----A 365 (509)
Q Consensus 290 ~~~~~~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----P 365 (509)
+ ++.+++..+....... ........+.+.+..+++........+..||+||+|| ++||+||+.+|.++ |
T Consensus 107 ~--sv~enl~~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qr----v~laral~~~p~llllDEP 179 (257)
T PRK10619 107 M--TVLENVMEAPIQVLGL-SKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQR----VSIARALAMEPEVLLFDEP 179 (257)
T ss_pred C--cHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHH----HHHHHHHhcCCCEEEEeCC
Confidence 5 5666664432110001 1111223344555555665533356688999999999 99999999999998 9
Q ss_pred CCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 366 SSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 366 tsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
|+|||+.++ .+..+|+.+.+.+..++...|+......+++.+++++.|++++.++.+.
T Consensus 180 t~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 238 (257)
T PRK10619 180 TSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQ 238 (257)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 999999999 9999999997655667777788788777677788888888887665543
No 99
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.85 E-value=1.9e-21 Score=190.60 Aligned_cols=183 Identities=11% Similarity=0.098 Sum_probs=135.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|....... ...+++.+...+++.+ ++.+++..+..
T Consensus 7 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~----~~~~~v~q~~~l~~~~--tv~e~l~~~~~ 80 (230)
T TIGR01184 7 TIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG----PDRMVVFQNYSLLPWL--TVRENIALAVD 80 (230)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC----hhheEEecCcccCCCC--CHHHHHHHHHH
Confidence 467899999999999999999999999986 799999886542211 1235666666666666 55565544321
Q ss_pred Cc-chhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHH
Q 010472 304 PI-DRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AAR 377 (509)
Q Consensus 304 ~~-~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~ 377 (509)
.. ... ........+.+.+..++|.. +....+..||+||+|| +.||+||+.+|+++ ||+|||+.++ .+.
T Consensus 81 ~~~~~~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qr----v~la~al~~~p~lllLDEPt~gLD~~~~~~l~ 154 (230)
T TIGR01184 81 RVLPDL-SKSERRAIVEEHIALVGLTE-AADKRPGQLSGGMKQR----VAIARALSIRPKVLLLDEPFGALDALTRGNLQ 154 (230)
T ss_pred hcccCC-CHHHHHHHHHHHHHHcCCHH-HHcCChhhCCHHHHHH----HHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH
Confidence 00 011 11122223444555556765 5567788999999999 99999999999998 9999999999 999
Q ss_pred HHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCC
Q 010472 378 IILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDA 420 (509)
Q Consensus 378 ~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (509)
.+|+++.+ .+.+++...|++.....+++.+.+++.|+++..++
T Consensus 155 ~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~ 198 (230)
T TIGR01184 155 EELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQ 198 (230)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccC
Confidence 99999865 46678888888888777778888888898886653
No 100
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.85 E-value=1.6e-21 Score=192.07 Aligned_cols=189 Identities=11% Similarity=0.065 Sum_probs=139.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccccee--eecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTL--IISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~--~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
++.+|++++|+|+||+|||||+++|+|... .|.+.+.|........ ..+..++|+.+...+|+.+ +..+++..+
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--tv~~nl~~~ 101 (242)
T TIGR03411 24 YVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENL--TVFENLELA 101 (242)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCC--CHHHHHHHh
Confidence 477999999999999999999999999976 8999999865322111 1234588888877777776 455555443
Q ss_pred cCCcch----h--hhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCH
Q 010472 302 VLPIDR----M--TEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPD 371 (509)
Q Consensus 302 ~~~~~~----~--~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~ 371 (509)
...... . .........+.+.+..+++.. +....+..||+|++|| +.||+|++.+|+++ ||+|||+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Ge~qr----v~laral~~~p~~lllDEPt~~LD~ 176 (242)
T TIGR03411 102 LPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD-EADRLAGLLSHGQKQW----LEIGMLLMQDPKLLLLDEPVAGMTD 176 (242)
T ss_pred hhcccccccccccccHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHH----HHHHHHHhcCCCEEEecCCccCCCH
Confidence 221000 0 000112233444555556665 5567788999999999 99999999999998 9999999
Q ss_pred HHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 372 ETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 372 ~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
.++ .++++|+++.++ .+++...|.+.....+++.+++++.|++++.++.+
T Consensus 177 ~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~ 227 (242)
T TIGR03411 177 EETEKTAELLKSLAGK-HSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLD 227 (242)
T ss_pred HHHHHHHHHHHHHhcC-CEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHH
Confidence 999 999999999875 57888888888887777778888888887655443
No 101
>PRK10908 cell division protein FtsE; Provisional
Probab=99.85 E-value=1.9e-21 Score=189.24 Aligned_cols=183 Identities=14% Similarity=0.093 Sum_probs=135.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce----eeecCeEEEEeCCCccCCCCcccHHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT----LIISEKLVLCDCPGLVFPSFSISRYDMVA 299 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~----~~~~~~i~l~d~pg~~~p~~~~~~~e~v~ 299 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|....... ...+..++|+.+...+++.+ +..+++.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~--tv~~~l~ 101 (222)
T PRK10908 24 HMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDR--TVYDNVA 101 (222)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccc--cHHHHHH
Confidence 467999999999999999999999999986 799999886542110 11245688888876666665 4555654
Q ss_pred hccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-
Q 010472 300 SGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR- 374 (509)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r- 374 (509)
.+..... . ........+.+.+..+++.. +....+..||+||+|| ++||+||+.+|.++ ||+|||+.++
T Consensus 102 ~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----v~laral~~~p~llllDEPt~~LD~~~~~ 174 (222)
T PRK10908 102 IPLIIAG-A-SGDDIRRRVSAALDKVGLLD-KAKNFPIQLSGGEQQR----VGIARAVVNKPAVLLADEPTGNLDDALSE 174 (222)
T ss_pred hHHHhcC-C-CHHHHHHHHHHHHHHcCChh-hhhCCchhCCHHHHHH----HHHHHHHHcCCCEEEEeCCCCcCCHHHHH
Confidence 4321100 1 11112223334444555665 4567788999999999 99999999999998 9999999999
Q ss_pred HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhccccccc
Q 010472 375 AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHE 417 (509)
Q Consensus 375 ~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~ 417 (509)
.+..+|+++.+.+.+++...|++.....+++.+.+++.|+++.
T Consensus 175 ~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 175 GILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 9999999997656678888899888887777777778887754
No 102
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.85 E-value=2.7e-21 Score=188.57 Aligned_cols=199 Identities=13% Similarity=0.080 Sum_probs=140.4
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccCC
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVLP 304 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~~ 304 (509)
+.+|++++|+|+||||||||+++|+|... .|.+.+.|.... .....++|+.+...+++.+..+..+++..+...
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~ 78 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG----KGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTG 78 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch----HhhCcEEEecccccccCCCCccHHHHHHhcccc
Confidence 56899999999999999999999999976 799999986532 123467888876555555545677776654321
Q ss_pred cch-h-hhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHH
Q 010472 305 IDR-M-TEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AAR 377 (509)
Q Consensus 305 ~~~-~-~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~ 377 (509)
... . .........+.+.+..+++.. +....+..||+||+|| ++|++||+.+|.++ |++|||..++ .+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----v~laral~~~p~llilDEP~~~LD~~~~~~l~ 153 (223)
T TIGR03771 79 HIGWLRRPCVADFAAVRDALRRVGLTE-LADRPVGELSGGQRQR----VLVARALATRPSVLLLDEPFTGLDMPTQELLT 153 (223)
T ss_pred ccccccCCcHHHHHHHHHHHHHhCCch-hhcCChhhCCHHHHHH----HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 100 0 000111223444444455655 5566788999999999 99999999999998 9999999999 999
Q ss_pred HHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhc
Q 010472 378 IILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLD 442 (509)
Q Consensus 378 ~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (509)
++|+++.+.+..++...|++.....+++.+.++ .|+++..++.+....+ ..++++|.
T Consensus 154 ~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~-------~~~~~~~~ 210 (223)
T TIGR03771 154 ELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP-------APWMTTFG 210 (223)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh-------HHHHHHhC
Confidence 999999765667788888888776655556666 5787765554433221 34566665
No 103
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.85 E-value=1.1e-21 Score=187.94 Aligned_cols=188 Identities=13% Similarity=0.088 Sum_probs=152.5
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
.+++|+++|++|+|||||||++++|+|++. .|.+.+.|..... .....|+|++..--+||.++......+++.+-
T Consensus 24 ~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~---~~~~rIGyLPEERGLy~k~tv~dql~yla~Lk 100 (300)
T COG4152 24 EVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ---EIKNRIGYLPEERGLYPKMTVEDQLKYLAELK 100 (300)
T ss_pred eecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh---hhhhhcccChhhhccCccCcHHHHHHHHHHhc
Confidence 578999999999999999999999999987 7999999976533 23457899988777899985443333333332
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
.. ...+....+..+++++++.. +..+...+||-|++|+ +.|+.+++++|.++ |++||||.+. .+.+
T Consensus 101 Gm----~~~e~~~~~~~wLer~~i~~-~~~~kIk~LSKGnqQK----IQfisaviHePeLlILDEPFSGLDPVN~elLk~ 171 (300)
T COG4152 101 GM----PKAEIQKKLQAWLERLEIVG-KKTKKIKELSKGNQQK----IQFISAVIHEPELLILDEPFSGLDPVNVELLKD 171 (300)
T ss_pred CC----cHHHHHHHHHHHHHhccccc-cccchHHHhhhhhhHH----HHHHHHHhcCCCEEEecCCccCCChhhHHHHHH
Confidence 21 22345556666777777776 7778889999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcccc
Q 010472 379 ILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEE 425 (509)
Q Consensus 379 lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (509)
.+.++++.+..++.-+|.|..+|..|+.+.++.+|..+.+++.+..-
T Consensus 172 ~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir 218 (300)
T COG4152 172 AIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIR 218 (300)
T ss_pred HHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHH
Confidence 99999987788888899999999999999999999988877664443
No 104
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.5e-21 Score=194.01 Aligned_cols=203 Identities=12% Similarity=0.082 Sum_probs=145.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|..... ........++|+++...+++.+ +..+++..+.
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~--tv~~~i~~~~ 101 (255)
T PRK11231 24 SLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGI--TVRELVAYGR 101 (255)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCc--cHHHHHHhcc
Confidence 467899999999999999999999999976 7899998865321 1112234688888876666655 4566665442
Q ss_pred CCcchh-h-hHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-H
Q 010472 303 LPIDRM-T-EHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-A 375 (509)
Q Consensus 303 ~~~~~~-~-~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~ 375 (509)
...... . ........+.+.+..+++.. +....+..||+||+|| +.||+|++.+|.++ |++|||+.++ .
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----v~laral~~~p~llllDEP~~~LD~~~~~~ 176 (255)
T PRK11231 102 SPWLSLWGRLSAEDNARVNQAMEQTRINH-LADRRLTDLSGGQRQR----AFLAMVLAQDTPVVLLDEPTTYLDINHQVE 176 (255)
T ss_pred chhhhhccCCCHHHHHHHHHHHHHcCCHH-HHcCCcccCCHHHHHH----HHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 111000 0 00111223344444455665 5677889999999999 99999999999998 9999999999 9
Q ss_pred HHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhc
Q 010472 376 ARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLD 442 (509)
Q Consensus 376 ~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (509)
+.++|+++...+.+++..+|++.....+++.+.+++.|+++..++.+.... .+.++++|.
T Consensus 177 l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~-------~~~~~~~~~ 236 (255)
T PRK11231 177 LMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT-------PGLLRTVFD 236 (255)
T ss_pred HHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC-------HHHHHHHhC
Confidence 999999987655678888888888777777888888888876555433321 145667765
No 105
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.85 E-value=1.6e-21 Score=195.58 Aligned_cols=190 Identities=12% Similarity=0.123 Sum_probs=139.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc-e---eeecCeEEEEeCCCccCCCCcccHHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ-T---LIISEKLVLCDCPGLVFPSFSISRYDMVA 299 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~-~---~~~~~~i~l~d~pg~~~p~~~~~~~e~v~ 299 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|...... . ......++|+++...+|+.+ +..+++.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~--tv~enl~ 106 (269)
T PRK11831 29 TVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDM--NVFDNVA 106 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCC--CHHHHHH
Confidence 577899999999999999999999999976 79999988654211 1 11234688888877677766 4556654
Q ss_pred hccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-
Q 010472 300 SGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR- 374 (509)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r- 374 (509)
.+....... ........+.+.+..+++.. +....+..||+||+|| +.||+||+.+|.++ ||+|||..++
T Consensus 107 ~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qr----v~laral~~~p~lllLDEPt~~LD~~~~~ 180 (269)
T PRK11831 107 YPLREHTQL-PAPLLHSTVMMKLEAVGLRG-AAKLMPSELSGGMARR----AALARAIALEPDLIMFDEPFVGQDPITMG 180 (269)
T ss_pred HHHHHccCC-CHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHH----HHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 432111001 11111223344455556765 5567788999999999 99999999999998 9999999999
Q ss_pred HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 375 AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 375 ~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
.+..+|+.+.+ .+.+++...|++.....+++.+.+++.|+++..++.+.
T Consensus 181 ~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (269)
T PRK11831 181 VLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQA 230 (269)
T ss_pred HHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHH
Confidence 99999999865 35677777888888877777888888898887655443
No 106
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.2e-21 Score=196.90 Aligned_cols=188 Identities=12% Similarity=0.079 Sum_probs=140.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce-eeecCeEEEEeCCC-ccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT-LIISEKLVLCDCPG-LVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~-~~~~~~i~l~d~pg-~~~p~~~~~~~e~v~~g 301 (509)
++.+|+++||+|+||||||||+++|+|+.+ .|.+.+.|....... ......++|++|.. ..++.. ++.+++..+
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~--tv~e~l~~~ 104 (274)
T PRK13647 27 SIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS--TVWDDVAFG 104 (274)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccC--cHHHHHHhh
Confidence 467899999999999999999999999976 799999997543211 12245688888864 223333 666777654
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
.... .. ........+.+.+..++|.. +....+..||+||+|| +.||+||+.+|+++ ||+|||+.++ .+
T Consensus 105 ~~~~-~~-~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgG~~qr----v~laraL~~~p~llllDEPt~~LD~~~~~~l 177 (274)
T PRK13647 105 PVNM-GL-DKDEVERRVEEALKAVRMWD-FRDKPPYHLSYGQKKR----VAIAGVLAMDPDVIVLDEPMAYLDPRGQETL 177 (274)
T ss_pred HHHc-CC-CHHHHHHHHHHHHHHCCCHH-HhcCChhhCCHHHHHH----HHHHHHHHcCCCEEEEECCCcCCCHHHHHHH
Confidence 3211 11 11112233444455556765 5677889999999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 377 RIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 377 ~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
..+|+.+.+.+.+++..+|++.....+++.+++++.|++++.++.+
T Consensus 178 ~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 223 (274)
T PRK13647 178 MEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKS 223 (274)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999765678888999999887777777788888888766654
No 107
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.85 E-value=2.5e-21 Score=187.27 Aligned_cols=184 Identities=14% Similarity=0.136 Sum_probs=136.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||+|||||+++|+|+.+ .|.+.+.|....... .....++|+++...+|+.+ +..+++..+..
T Consensus 20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~i~~v~q~~~~~~~~--t~~en~~~~~~ 96 (213)
T TIGR01277 20 NVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA-PYQRPVSMLFQENNLFAHL--TVRQNIGLGLH 96 (213)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC-hhccceEEEeccCccCCCC--cHHHHHHhHhh
Confidence 577999999999999999999999999986 799999987542211 2345688888876677666 55666654332
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
+..... ......+.+.+..+++.+ +....+..||+||+|| +.||+|++.+|.++ |++|||..++ .+..
T Consensus 97 ~~~~~~--~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----l~laral~~~p~llllDEPt~~LD~~~~~~~~~ 169 (213)
T TIGR01277 97 PGLKLN--AEQQEKVVDAAQQVGIAD-YLDRLPEQLSGGQRQR----VALARCLVRPNPILLLDEPFSALDPLLREEMLA 169 (213)
T ss_pred ccCCcc--HHHHHHHHHHHHHcCcHH-HhhCCcccCCHHHHHH----HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH
Confidence 211000 111223344455556765 5677889999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCC
Q 010472 379 ILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESD 419 (509)
Q Consensus 379 lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~ 419 (509)
+|+.+.+ ++..++...|.......+++.+.+++.|++.+.+
T Consensus 170 ~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~ 211 (213)
T TIGR01277 170 LVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211 (213)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEec
Confidence 9999875 4667777888887766666677777888876543
No 108
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.85 E-value=1.9e-21 Score=188.98 Aligned_cols=181 Identities=15% Similarity=0.133 Sum_probs=131.5
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccccee----ee-cCeEEEEeCCCccCCCCcccHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTL----II-SEKLVLCDCPGLVFPSFSISRYDMV 298 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~----~~-~~~i~l~d~pg~~~p~~~~~~~e~v 298 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|........ .. ...++|+.+...+++.+ +..+++
T Consensus 27 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~--tv~~~l 104 (221)
T TIGR02211 27 SIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDF--TALENV 104 (221)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCC--cHHHHH
Confidence 467999999999999999999999999976 7999998865322110 11 24688888877777766 455555
Q ss_pred HhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 299 ASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 299 ~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
..+.... .. ........+.+.+..+++.. +....+..||+||+|| ++||+||+.+|.++ ||+|||+.++
T Consensus 105 ~~~~~~~-~~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----v~laral~~~p~illlDEPt~~LD~~~~ 177 (221)
T TIGR02211 105 AMPLLIG-KK-SVKEAKERAYEMLEKVGLEH-RINHRPSELSGGERQR----VAIARALVNQPSLVLADEPTGNLDNNNA 177 (221)
T ss_pred HHHHHhc-CC-CHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHH----HHHHHHHhCCCCEEEEeCCCCcCCHHHH
Confidence 4432100 00 11112223444555556765 5567788999999999 99999999999998 9999999999
Q ss_pred -HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccc
Q 010472 375 -AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELH 416 (509)
Q Consensus 375 -~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~ 416 (509)
.+..+|+.+.+ .+.+++..+|++...+.| +.+.+++.|+++
T Consensus 178 ~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~-d~v~~l~~G~i~ 220 (221)
T TIGR02211 178 KIIFDLMLELNRELNTSFLVVTHDLELAKKL-DRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHhhc-CEEEEEeCCEec
Confidence 99999999864 356677777888777776 667777777654
No 109
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1e-21 Score=200.39 Aligned_cols=193 Identities=10% Similarity=0.014 Sum_probs=142.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-------------------------ceeeecCeEE
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-------------------------QTLIISEKLV 278 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-------------------------~~~~~~~~i~ 278 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|..... .....+..++
T Consensus 29 ~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig 108 (305)
T PRK13651 29 EINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVG 108 (305)
T ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceE
Confidence 467899999999999999999999999986 7888887653210 0112345688
Q ss_pred EEeCCC-ccCCCCcccHHHHHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHH
Q 010472 279 LCDCPG-LVFPSFSISRYDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAY 357 (509)
Q Consensus 279 l~d~pg-~~~p~~~~~~~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~AL 357 (509)
|++|.. ..+.. .++.+++.++..... . ........+.+.+..++|...+..+.+..|||||+|| ++||+||
T Consensus 109 ~v~Q~~~~~l~~--~tv~e~i~~~~~~~~-~-~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqr----valA~aL 180 (305)
T PRK13651 109 VVFQFAEYQLFE--QTIEKDIIFGPVSMG-V-SKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRR----VALAGIL 180 (305)
T ss_pred EEeeCccccccc--ccHHHHHHhhHHHcC-C-CHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHH----HHHHHHH
Confidence 888752 22222 367777766543211 1 1112233455555666675226678889999999999 9999999
Q ss_pred HHcCCce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccC
Q 010472 358 CASRGYV----ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEV 426 (509)
Q Consensus 358 a~~p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (509)
+.+|++| ||+|||+..+ .+..+|+++.+.+.+++..+|++.....+++.+++++.|++++.++.+....
T Consensus 181 ~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 181 AMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999998 9999999999 9999999997656778888999988766667778888888888776655443
No 110
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.85 E-value=1.6e-21 Score=192.89 Aligned_cols=189 Identities=16% Similarity=0.146 Sum_probs=138.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCcccccc---eeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHFQ---TLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~~---~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|...... ....+..++|+.+...+|+ . +..
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~--tv~ 99 (247)
T TIGR00972 23 DIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-M--SIY 99 (247)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-C--CHH
Confidence 478999999999999999999999999974 68888988764321 1123456888888766666 5 556
Q ss_pred HHHHhccCCcchhhhHHHHHHHHHHhCCccchh----hHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCC
Q 010472 296 DMVASGVLPIDRMTEHRQAVQVVANRVPRHVIE----NVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASS 367 (509)
Q Consensus 296 e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~----~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----Pts 367 (509)
+++..+.... ...........+.+.+..+++. . +....+..||+||+|| +.||+||+.+|+++ ||+
T Consensus 100 e~l~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LSgG~~qr----v~laral~~~p~llllDEPt~ 173 (247)
T TIGR00972 100 DNIAYGPRLH-GIKDKKELDEIVEESLKKAALWDEVKD-RLHDSALGLSGGQQQR----LCIARALAVEPEVLLLDEPTS 173 (247)
T ss_pred HHHHhHHHhc-CCCCHHHHHHHHHHHHHHcCCCcchhh-HhhCCcccCCHHHHHH----HHHHHHHhcCCCEEEEeCCcc
Confidence 6665432111 0001111122333334444454 3 4456788999999999 99999999999998 999
Q ss_pred CCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 368 GLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 368 GLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
|||+.++ .+..+|+++.++ .+++..+|++.....+++.+.+++.|++++.++.+..
T Consensus 174 ~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 174 ALDPIATGKIEELIQELKKK-YTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred cCCHHHHHHHHHHHHHHHhc-CeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999 999999999876 6788889999888777778888888998876655433
No 111
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.6e-21 Score=199.54 Aligned_cols=213 Identities=10% Similarity=0.058 Sum_probs=154.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc------ceEEeeCCcccccce---e--eecCeEEEEeCCCc--cCCCCcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR------TGVTSTPGKTKHFQT---L--IISEKLVLCDCPGL--VFPSFSI 292 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~------~g~~~~~G~t~~~~~---~--~~~~~i~l~d~pg~--~~p~~~~ 292 (509)
++.+|+++||+|+||||||||+++|+|+.. .|.+.+.|....... . .....++|++|... ++|.+
T Consensus 29 ~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~-- 106 (330)
T PRK15093 29 TLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSE-- 106 (330)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccc--
Confidence 478999999999999999999999999973 689999987542111 0 11246888888643 44555
Q ss_pred cHHHHHHhccCC--c-ch-hhhHHHHHHHHHHhCCccchhh--HhhccCCCCCCccccCCCchHHHHHHHHHHcCCce--
Q 010472 293 SRYDMVASGVLP--I-DR-MTEHRQAVQVVANRVPRHVIEN--VCKINLPKPKPYESQSRPPLALELLRAYCASRGYV-- 364 (509)
Q Consensus 293 ~~~e~v~~g~~~--~-~~-~~~~~~~~~~i~~~l~~~~L~~--~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL-- 364 (509)
++.+++...+.. . .. ..........+.+.+..++|.+ .+....+..|||||+|| +.||+||+.+|.+|
T Consensus 107 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QR----v~iArAL~~~P~llil 182 (330)
T PRK15093 107 RVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQK----VMIAIALANQPRLLIA 182 (330)
T ss_pred cHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHH----HHHHHHHHCCCCEEEE
Confidence 444444332110 0 00 0011112234445555556642 14467789999999999 99999999999998
Q ss_pred --eCCCCCHHHH-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHH
Q 010472 365 --ASSGLPDETR-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHV 440 (509)
Q Consensus 365 --PtsGLD~~~r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (509)
||+|||...+ .+..+|+++.+ .++.++..+|++.....+++.+++++.|+|++.++.+....+. ..|..+.+
T Consensus 183 DEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~~~~i~~~p----~~~y~~~l 258 (330)
T PRK15093 183 DEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTTP----HHPYTQAL 258 (330)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCC----CCHHHHHH
Confidence 9999999999 99999999976 4788999999999998888899999999999988775554332 23777888
Q ss_pred hccCCCcc
Q 010472 441 LDDLSSFD 448 (509)
Q Consensus 441 ~~~~~~~~ 448 (509)
+..++.++
T Consensus 259 l~~~~~~~ 266 (330)
T PRK15093 259 IRAIPDFG 266 (330)
T ss_pred HHhCCccc
Confidence 88877654
No 112
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.85 E-value=1.5e-21 Score=195.16 Aligned_cols=206 Identities=13% Similarity=0.107 Sum_probs=145.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce----eeecCeEEEEeCCC--ccCCCCcccHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT----LIISEKLVLCDCPG--LVFPSFSISRYDM 297 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~----~~~~~~i~l~d~pg--~~~p~~~~~~~e~ 297 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|....... ...+..++|+.+.. .+++.+ ++.++
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~--tv~~~ 110 (265)
T TIGR02769 33 SIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRM--TVRQI 110 (265)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCC--CHHHH
Confidence 478999999999999999999999999976 799999986543211 11245688888864 345555 45555
Q ss_pred HHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHH
Q 010472 298 VASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDET 373 (509)
Q Consensus 298 v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~ 373 (509)
+..+......+ ........+.+.+..+++...+....+..||+||+|| ++||+||+.+|.+| |++|||+.+
T Consensus 111 l~~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qr----v~laral~~~p~illLDEPt~~LD~~~ 185 (265)
T TIGR02769 111 IGEPLRHLTSL-DESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQR----INIARALAVKPKLIVLDEAVSNLDMVL 185 (265)
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHH----HHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 53321100001 0111122334444445564224566788999999999 99999999999998 999999999
Q ss_pred H-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhcc
Q 010472 374 R-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDD 443 (509)
Q Consensus 374 r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (509)
+ .+..+|+++.+ .+.+++..+|++.....+++.+.++..|++++.++.+......+ |..++++++
T Consensus 186 ~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~-----~~~~~~~~~ 252 (265)
T TIGR02769 186 QAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSFKH-----PAGRNLQSA 252 (265)
T ss_pred HHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcCCCC-----HHHHHHHHh
Confidence 9 99999999875 35678888899888887777888888899988776655544322 555666543
No 113
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=2.5e-21 Score=192.21 Aligned_cols=191 Identities=13% Similarity=0.107 Sum_probs=140.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce--eeecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT--LIISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~--~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|....... ...+..+.|+.+...+|+.+ +..+++..+
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--tv~enl~~~ 104 (255)
T PRK11300 27 EVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREM--TVIENLLVA 104 (255)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCC--cHHHHHHHh
Confidence 467899999999999999999999999976 799999987543211 11123477777766677766 556666543
Q ss_pred cCCc------------chhh-hHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----
Q 010472 302 VLPI------------DRMT-EHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV---- 364 (509)
Q Consensus 302 ~~~~------------~~~~-~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL---- 364 (509)
.... .... ........+.+.+..+++.. +....+..||+||+|| +.||+||+.+|.++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qr----v~la~al~~~p~llllDE 179 (255)
T PRK11300 105 QHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLE-HANRQAGNLAYGQQRR----LEIARCMVTQPEILMLDE 179 (255)
T ss_pred hhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhh-hhhCChhhCCHHHHHH----HHHHHHHhcCCCEEEEcC
Confidence 2110 0000 00112233445555566765 5667788999999999 99999999999998
Q ss_pred eCCCCCHHHH-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 365 ASSGLPDETR-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 365 PtsGLD~~~r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
|++|||..++ .+..+|..+.+ .+.+++..+|.+.....+++.++++..|+++..++.+.
T Consensus 180 Pt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 240 (255)
T PRK11300 180 PAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEE 240 (255)
T ss_pred CccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHH
Confidence 9999999999 99999999876 36788888899888877777888888888887665443
No 114
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.5e-21 Score=190.76 Aligned_cols=189 Identities=16% Similarity=0.157 Sum_probs=138.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce--eeecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT--LIISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~--~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|....... ...+..++|+.+...+++.+ +..+++...
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--tv~enl~~~ 102 (241)
T PRK10895 25 TVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRL--SVYDNLMAV 102 (241)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccC--cHHHHHhhh
Confidence 467999999999999999999999999976 799999986543211 11234688888876666665 555665443
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
....... ........+.+.+..+++.. +....+..||+||+|| +.||+|++.+|.++ ||+|||..++ .+
T Consensus 103 ~~~~~~~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----v~laral~~~p~llllDEPt~~LD~~~~~~l 176 (241)
T PRK10895 103 LQIRDDL-SAEQREDRANELMEEFHIEH-LRDSMGQSLSGGERRR----VEIARALAANPKFILLDEPFAGVDPISVIDI 176 (241)
T ss_pred hhccccc-CHHHHHHHHHHHHHHcCCHH-HhhcchhhCCHHHHHH----HHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 2111001 11122233444455556665 5566778999999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 377 RIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 377 ~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
..+|+.+.+.+.+++..+|.+.....+++.+..++.|++++.++.+
T Consensus 177 ~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 222 (241)
T PRK10895 177 KRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPT 222 (241)
T ss_pred HHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHH
Confidence 9999998764556777778887777777788888888888765543
No 115
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.4e-21 Score=197.93 Aligned_cols=191 Identities=11% Similarity=0.045 Sum_probs=142.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-----ceeeecCeEEEEeCCC--ccCCCCcccHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-----QTLIISEKLVLCDCPG--LVFPSFSISRYD 296 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-----~~~~~~~~i~l~d~pg--~~~p~~~~~~~e 296 (509)
++.+|++++|+|+||+|||||+++|+|+.. .|.+.+.|..... .....+..++|+.|.. .+|+ .++.+
T Consensus 28 ~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~---~tv~~ 104 (288)
T PRK13643 28 EVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE---ETVLK 104 (288)
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc---chHHH
Confidence 578999999999999999999999999986 7999999976431 1112345688888754 3333 36677
Q ss_pred HHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHH
Q 010472 297 MVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDE 372 (509)
Q Consensus 297 ~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~ 372 (509)
++.++..... . ...+....+.+.+..++|...+....+..||+||+|| ++||+||+.+|+++ ||+|||+.
T Consensus 105 ~l~~~~~~~~-~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqr----vaiA~aL~~~p~illLDEPt~gLD~~ 178 (288)
T PRK13643 105 DVAFGPQNFG-I-PKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRR----VAIAGILAMEPEVLVLDEPTAGLDPK 178 (288)
T ss_pred HHHhHHHHcC-C-CHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHH----HHHHHHHHhCCCEEEEECCccCCCHH
Confidence 7765532111 1 1112223344555555664325567789999999999 99999999999998 99999999
Q ss_pred HH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcccc
Q 010472 373 TR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEE 425 (509)
Q Consensus 373 ~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (509)
++ .+..+|+.+.+.+.+++..+|++.....+++.+.++..|+++..++.+...
T Consensus 179 ~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 232 (288)
T PRK13643 179 ARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVF 232 (288)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99 999999998765678888999998887767788888888888766655443
No 116
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.85 E-value=3.1e-21 Score=189.52 Aligned_cols=187 Identities=13% Similarity=0.050 Sum_probs=134.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|.............++|+.+...+++.+ +..+++..+..
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~--t~~~~l~~~~~ 100 (236)
T TIGR03864 23 TVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDL--SVRQNLRYHAA 100 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccC--cHHHHHHHHHH
Confidence 467999999999999999999999999976 79999988654221111224688888876666665 45555543221
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
.. .. ........+.+.+..++|.. +....+..||+||+|| ++||+||+.+|.++ |++|||+.++ .+..
T Consensus 101 ~~-~~-~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qr----l~laral~~~p~llllDEP~~~LD~~~~~~l~~ 173 (236)
T TIGR03864 101 LH-GL-SRAEARERIAALLARLGLAE-RADDKVRELNGGHRRR----VEIARALLHRPALLLLDEPTVGLDPASRAAIVA 173 (236)
T ss_pred hc-CC-CHHHHHHHHHHHHHHcCChh-hhcCChhhCCHHHHHH----HHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHH
Confidence 10 01 11112223444444556665 4566788999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 379 ILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 379 lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
+|+++.+ .+..++...|++...+. ++.+.+++.|++++.++.+
T Consensus 174 ~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~ 217 (236)
T TIGR03864 174 HVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAA 217 (236)
T ss_pred HHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHH
Confidence 9999874 34556777788877765 6777777888887665443
No 117
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=2.6e-21 Score=193.47 Aligned_cols=190 Identities=11% Similarity=0.053 Sum_probs=138.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
.+.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|..... ........++|+++...+++.+ +..+++..+.
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~--tv~e~l~~~~ 110 (265)
T PRK10575 33 TFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGM--TVRELVAIGR 110 (265)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCc--cHHHHHHhCc
Confidence 467899999999999999999999999976 7999998865321 1112234688888865555655 5566665543
Q ss_pred CCcchh--hhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-H
Q 010472 303 LPIDRM--TEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-A 375 (509)
Q Consensus 303 ~~~~~~--~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~ 375 (509)
...... .........+.+.+..+++.. +....+..||+||+|| +.||+||+.+|+++ ||+|||..++ .
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qr----v~laral~~~p~lllLDEPt~~LD~~~~~~ 185 (265)
T PRK10575 111 YPWHGALGRFGAADREKVEEAISLVGLKP-LAHRLVDSLSGGERQR----AWIAMLVAQDSRCLLLDEPTSALDIAHQVD 185 (265)
T ss_pred ccccccccCCCHHHHHHHHHHHHHcCCHH-HhcCCcccCCHHHHHH----HHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 211000 000111223344444556665 5667788999999999 99999999999998 9999999999 9
Q ss_pred HHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 376 ARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 376 ~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
+..+|+++.. .+..++...|++.....+++.+.+++.|++++.++.+
T Consensus 186 ~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~ 233 (265)
T PRK10575 186 VLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPA 233 (265)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHH
Confidence 9999999865 3567888888988887777777888888888665543
No 118
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=2.4e-21 Score=191.02 Aligned_cols=190 Identities=12% Similarity=0.120 Sum_probs=138.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc-------eeeecCeEEEEeCCCccCCCCcccHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ-------TLIISEKLVLCDCPGLVFPSFSISRYD 296 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~-------~~~~~~~i~l~d~pg~~~p~~~~~~~e 296 (509)
++.+|++++|+|+||+|||||+++|+|... .|.+.+.|...... ....+..++|+.+...+|+.+ +..+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--tv~e 101 (242)
T PRK11124 24 DCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHL--TVQQ 101 (242)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCC--cHHH
Confidence 467899999999999999999999999976 79999998754211 112245688888877777766 4555
Q ss_pred HHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHH
Q 010472 297 MVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDE 372 (509)
Q Consensus 297 ~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~ 372 (509)
++..+....... ........+.+.+..+++.. +....+..||+||+|| ++||+|++.+|.++ |++|||+.
T Consensus 102 ~i~~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qr----v~laral~~~p~llilDEPt~~LD~~ 175 (242)
T PRK11124 102 NLIEAPCRVLGL-SKDQALARAEKLLERLRLKP-YADRFPLHLSGGQQQR----VAIARALMMEPQVLLFDEPTAALDPE 175 (242)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHH----HHHHHHHhcCCCEEEEcCCCCcCCHH
Confidence 554321110000 01112233444555556765 5567788999999999 99999999999998 99999999
Q ss_pred HH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 373 TR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 373 ~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
++ .+..+|+++.+.+.+++...|+......+++.+..+..|++++.++.+.
T Consensus 176 ~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 176 ITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99 9999999987645667788888888766667778888888877655443
No 119
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.84 E-value=2.5e-21 Score=186.78 Aligned_cols=179 Identities=15% Similarity=0.051 Sum_probs=127.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc-eeeecCeEEEEeCCC-ccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ-TLIISEKLVLCDCPG-LVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~-~~~~~~~i~l~d~pg-~~~p~~~~~~~e~v~~g 301 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|...... .......++|+.+.. ..++.. +..+++..+
T Consensus 23 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~--t~~~~l~~~ 100 (211)
T cd03225 23 TIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP--TVEEEVAFG 100 (211)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC--cHHHHHHHH
Confidence 477899999999999999999999999976 79999988654221 112335678888764 234444 555665443
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
.... .. ........+.+.+..++|.. +..+.+..||+||+|| +.||+||+.+|+++ ||+|||+..+ .+
T Consensus 101 ~~~~-~~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qr----v~laral~~~p~llllDEPt~~LD~~~~~~~ 173 (211)
T cd03225 101 LENL-GL-PEEEIEERVEEALELVGLEG-LRDRSPFTLSGGQKQR----VAIAGVLAMDPDILLLDEPTAGLDPAGRREL 173 (211)
T ss_pred HHHc-CC-CHHHHHHHHHHHHHHcCcHh-hhcCCcccCCHHHHHH----HHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 2110 00 11111223444455556665 5567788999999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhcCCccEEEcCCCCChhhccchhhHhhccc
Q 010472 377 RIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLL 413 (509)
Q Consensus 377 ~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~ 413 (509)
..+|+++.+.+.+++...|+....+..++.+.+++.|
T Consensus 174 ~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G 210 (211)
T cd03225 174 LELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210 (211)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999764567788888888777655555555444
No 120
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.9e-21 Score=199.69 Aligned_cols=191 Identities=10% Similarity=0.056 Sum_probs=141.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc-----------------eeeecCeEEEEeCCC--
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ-----------------TLIISEKLVLCDCPG-- 284 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~-----------------~~~~~~~i~l~d~pg-- 284 (509)
++.+|+++||+|+||||||||+++|+|+.. .|.+.+.|...... ...++..++|+.|..
T Consensus 48 ~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~ 127 (320)
T PRK13631 48 TFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEY 127 (320)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchh
Confidence 578999999999999999999999999987 79999998653211 112345688888754
Q ss_pred ccCCCCcccHHHHHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce
Q 010472 285 LVFPSFSISRYDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV 364 (509)
Q Consensus 285 ~~~p~~~~~~~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL 364 (509)
.+|+ .++.+++..+..... . ........+.+.+..++|...+..+.+..|||||+|| ++||+||+.+|.+|
T Consensus 128 ~l~~---~tv~eni~~~~~~~~-~-~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqR----vaiAraL~~~p~iL 198 (320)
T PRK13631 128 QLFK---DTIEKDIMFGPVALG-V-KKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRR----VAIAGILAIQPEIL 198 (320)
T ss_pred cccc---chHHHHHHhhHHhcC-C-CHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHH----HHHHHHHHcCCCEE
Confidence 3443 366777766532211 1 1122233444555555675225667788999999999 99999999999998
Q ss_pred ----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcccc
Q 010472 365 ----ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEE 425 (509)
Q Consensus 365 ----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (509)
||+|||+.++ .+..+|+++...+.+++..+|+++.....++.+.++..|++++.++.+...
T Consensus 199 LLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g~~~~~~ 264 (320)
T PRK13631 199 IFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIF 264 (320)
T ss_pred EEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999 999999998765667888899998776655677888888888776665443
No 121
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.9e-21 Score=192.64 Aligned_cols=191 Identities=12% Similarity=0.067 Sum_probs=137.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDM 297 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~ 297 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|..... .....+..++|+.|...+++.+ +..++
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~--tv~en 102 (250)
T PRK14247 25 EIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNL--SIFEN 102 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCC--cHHHH
Confidence 467899999999999999999999999974 7999999876432 1112345688888876566665 55666
Q ss_pred HHhccCCcchhhhHHHHHHHHHHhCCccchhh---HhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 298 VASGVLPIDRMTEHRQAVQVVANRVPRHVIEN---VCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 298 v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~---~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
+..+...........+....+.+.+..+++.. ......+..||+||+|| ++||+||+.+|.++ |++|||
T Consensus 103 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qr----v~laral~~~p~lllLDEP~~~LD 178 (250)
T PRK14247 103 VALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQR----LCIARALAFQPEVLLADEPTANLD 178 (250)
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHH----HHHHHHHhcCCCEEEEcCCCccCC
Confidence 65442110000011112223333444344421 13456678999999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
+.++ .+..+|+.+.+| .+++...|++.....+++.+.+++.|++++.++.+.
T Consensus 179 ~~~~~~l~~~l~~~~~~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14247 179 PENTAKIESLFLELKKD-MTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTRE 231 (250)
T ss_pred HHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHH
Confidence 9999 999999998765 678888888888776667888888888877655443
No 122
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=2e-21 Score=191.66 Aligned_cols=189 Identities=12% Similarity=0.052 Sum_probs=137.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++.+|++++|+|+||+|||||+++|+|+.+ .|.+.+.|..... ........++|+++...+|+.+ +..+++..+.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~--tv~e~l~~~~ 100 (242)
T cd03295 23 EIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHM--TVEENIALVP 100 (242)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCC--cHHHHHHHHH
Confidence 478999999999999999999999999976 7899999865422 1112244688888877677766 4555554331
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchhh-HhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIEN-VCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~~-~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
... .. ........+.+.+..+++.. .+....+..||+||+|| ++||+||+.+|.++ |++|||..++ .+
T Consensus 101 ~~~-~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qr----v~laral~~~p~llllDEPt~~LD~~~~~~l 174 (242)
T cd03295 101 KLL-KW-PKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQR----VGVARALAADPPLLLMDEPFGALDPITRDQL 174 (242)
T ss_pred HHc-CC-CHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHH----HHHHHHHhcCCCEEEecCCcccCCHHHHHHH
Confidence 100 01 11112223344444445542 24566788999999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 377 RIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 377 ~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
..+|+++.+ .+.+++..+|.......+++.+.+++.|++++.++.+
T Consensus 175 ~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 221 (242)
T cd03295 175 QEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPD 221 (242)
T ss_pred HHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 999999875 3566777788888777777788888889988765544
No 123
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=2.9e-21 Score=189.83 Aligned_cols=187 Identities=16% Similarity=0.151 Sum_probs=136.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce--eeecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT--LIISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~--~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
.+.+|++++|+|+||+|||||+++|+|+.+ .|.+.+.|....... ......++|+.+...+|+.+ ++.+++..+
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--tv~~~l~~~ 104 (237)
T PRK11614 27 HINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRM--TVEENLAMG 104 (237)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCC--cHHHHHHHh
Confidence 467899999999999999999999999986 899999987543211 11345688888877777766 456666544
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
..... .......+..+.+.++ ++.. +....+..||+||+|| +.||+|++.+|.++ ||+|||...+ .+
T Consensus 105 ~~~~~-~~~~~~~~~~~l~~~~--~l~~-~~~~~~~~LS~G~~qr----l~la~al~~~p~illlDEPt~~LD~~~~~~l 176 (237)
T PRK11614 105 GFFAE-RDQFQERIKWVYELFP--RLHE-RRIQRAGTMSGGEQQM----LAIGRALMSQPRLLLLDEPSLGLAPIIIQQI 176 (237)
T ss_pred hhccC-hhHHHHHHHHHHHHHH--HHHH-HHhCchhhCCHHHHHH----HHHHHHHHhCCCEEEEcCccccCCHHHHHHH
Confidence 32111 1111112222333221 2444 4456778899999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 377 RIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 377 ~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
..+|+++.+.+.+++...|++.+...+++.+++++.|+++..++.+
T Consensus 177 ~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 222 (237)
T PRK11614 177 FDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGD 222 (237)
T ss_pred HHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHH
Confidence 9999998764555666789988877777888888888887765543
No 124
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.6e-21 Score=193.71 Aligned_cols=190 Identities=15% Similarity=0.098 Sum_probs=136.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCcccccc---eeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHFQ---TLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~~---~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|...... ....+..++|+.|...+|+ + ++.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~--tv~ 105 (254)
T PRK14273 29 KILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-M--SIY 105 (254)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc-C--cHH
Confidence 477999999999999999999999999975 58999988754211 1123456888888655553 3 667
Q ss_pred HHHHhccCCcchh--hhHHHHHHHHHHhCCcc-chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCC
Q 010472 296 DMVASGVLPIDRM--TEHRQAVQVVANRVPRH-VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSG 368 (509)
Q Consensus 296 e~v~~g~~~~~~~--~~~~~~~~~i~~~l~~~-~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsG 368 (509)
+++..+....... ......+..+.+.+... .+.. .....+..|||||+|| +.||+||+.+|.++ |++|
T Consensus 106 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LSgG~~qr----v~laral~~~p~lllLDEPt~~ 180 (254)
T PRK14273 106 DNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKD-KLNTNALSLSGGQQQR----LCIARTLAIEPNVILMDEPTSA 180 (254)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHH-HHhCCcccCCHHHHHH----HHHHHHHHcCCCEEEEeCCCcc
Confidence 7776543211100 01112223333333211 1223 3456688999999999 99999999999998 9999
Q ss_pred CCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 369 LPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 369 LD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
||..++ .+..+|+.+.++ .+++...|.+.....+++.+.++..|++++.++.+..
T Consensus 181 LD~~~~~~l~~~l~~~~~~-~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 181 LDPISTGKIEELIINLKES-YTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred cCHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999 999999999765 6777888888887777778888888888876655443
No 125
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.84 E-value=3.4e-21 Score=192.03 Aligned_cols=188 Identities=13% Similarity=0.108 Sum_probs=137.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|..... ........++|+.+...+++.+ ++.+++..+.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~--tv~e~l~~~~ 101 (258)
T PRK13548 24 TLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF--TVEEVVAMGR 101 (258)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCC--CHHHHHHhhh
Confidence 467899999999999999999999999976 8999998865421 1112234678888876665555 5667665543
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHH------HcCCce----eCCCCCHH
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYC------ASRGYV----ASSGLPDE 372 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa------~~p~lL----PtsGLD~~ 372 (509)
..... ........+.+.+..++|.. +....+..||+||+|| ++||+||+ .+|.++ ||+|||+.
T Consensus 102 ~~~~~--~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGe~qr----v~la~al~~~~~~~~~p~lllLDEPt~~LD~~ 174 (258)
T PRK13548 102 APHGL--SRAEDDALVAAALAQVDLAH-LAGRDYPQLSGGEQQR----VQLARVLAQLWEPDGPPRWLLLDEPTSALDLA 174 (258)
T ss_pred cccCC--CcHHHHHHHHHHHHHcCCHh-HhcCCcccCCHHHHHH----HHHHHHHhcccccCCCCCEEEEeCCcccCCHH
Confidence 22110 00111223344455556665 5667788999999999 99999999 488987 99999999
Q ss_pred HH-HHHHHHHHhh-cCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 373 TR-AARIILKDFI-DGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 373 ~r-~~~~lLkd~~-~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
++ .+..+|+++. +.+.+++..+|++.....+++.+.++..|++++.++.+
T Consensus 175 ~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 226 (258)
T PRK13548 175 HQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPA 226 (258)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHH
Confidence 99 9999999987 54556777778888887677777788888887655443
No 126
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=4.5e-21 Score=190.87 Aligned_cols=184 Identities=14% Similarity=0.085 Sum_probs=134.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|..... ....++|+.+...+++.+ ++.+++..+..
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~----~~~~~~~v~q~~~~~~~~--tv~e~l~~~~~ 96 (255)
T PRK11248 23 TLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG----PGAERGVVFQNEGLLPWR--NVQDNVAFGLQ 96 (255)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC----CCCcEEEEeCCCccCCCC--cHHHHHHhHHH
Confidence 478999999999999999999999999976 7999998865421 123467888776666665 45566544321
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
.. .. ........+.+.+..++|.. +....+..||+||+|| +.||+||+.+|.++ ||+|||+.++ .+..
T Consensus 97 ~~-~~-~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qr----l~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 169 (255)
T PRK11248 97 LA-GV-EKMQRLEIAHQMLKKVGLEG-AEKRYIWQLSGGQRQR----VGIARALAANPQLLLLDEPFGALDAFTREQMQT 169 (255)
T ss_pred Hc-CC-CHHHHHHHHHHHHHHcCChh-HhhCChhhCCHHHHHH----HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 10 01 11112233444555556765 5567788999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhh-cCCccEEEcCCCCChhhccchhhHhhc--ccccccCCCCc
Q 010472 379 ILKDFI-DGKLPHFEMPPGMSHEEVGMEDTQASS--LLELHESDASD 422 (509)
Q Consensus 379 lLkd~~-~gkl~~~~~pp~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 422 (509)
+|+++. +.+.+++..+|++.....+++.+.+++ .|++++..+.+
T Consensus 170 ~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 170 LLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 999984 345566777788888777667777776 58887765443
No 127
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=2e-21 Score=196.72 Aligned_cols=188 Identities=13% Similarity=0.099 Sum_probs=139.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc-----eeeecCeEEEEeCCC--ccCCCCcccHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ-----TLIISEKLVLCDCPG--LVFPSFSISRYD 296 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~-----~~~~~~~i~l~d~pg--~~~p~~~~~~~e 296 (509)
++.+|++++|+|+||+|||||+++|+|+.+ .|.+.+.|...... .......++|+.+.. .+| .. ++.+
T Consensus 29 ~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~--tv~e 105 (287)
T PRK13641 29 ELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF-EN--TVLK 105 (287)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc-cc--hHHH
Confidence 578999999999999999999999999987 79999999754211 112234678887754 233 23 5666
Q ss_pred HHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHH
Q 010472 297 MVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDE 372 (509)
Q Consensus 297 ~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~ 372 (509)
++..+..... . ........+.+.+..++|...+....+..||+||+|| ++||+||+.+|.+| ||+|||+.
T Consensus 106 ~l~~~~~~~~-~-~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qr----l~laral~~~p~lLlLDEPt~gLD~~ 179 (287)
T PRK13641 106 DVEFGPKNFG-F-SEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRR----VAIAGVMAYEPEILCLDEPAAGLDPE 179 (287)
T ss_pred HHHHHHHHcC-C-CHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHH----HHHHHHHHcCCCEEEEECCCCCCCHH
Confidence 6654322111 1 1112223344555555675225677789999999999 99999999999998 99999999
Q ss_pred HH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 373 TR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 373 ~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
++ .+..+|+.+.+.+.+++...|++......++.+.+++.|++++.++.+
T Consensus 180 ~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 180 GRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99 999999999765677888899999887777788888888887765544
No 128
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.8e-21 Score=197.21 Aligned_cols=189 Identities=11% Similarity=0.077 Sum_probs=140.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-----ceeeecCeEEEEeCCC--ccCCCCcccHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-----QTLIISEKLVLCDCPG--LVFPSFSISRYD 296 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-----~~~~~~~~i~l~d~pg--~~~p~~~~~~~e 296 (509)
++.+|++++|+|+||+|||||+++|+|+.. .|++.+.|..... .....+..++|++|.. .+|+ . ++.+
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~--tv~e 105 (290)
T PRK13634 29 SIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFE-E--TVEK 105 (290)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhh-h--hHHH
Confidence 578999999999999999999999999977 7999999976431 1112345688888753 3332 3 6677
Q ss_pred HHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHH
Q 010472 297 MVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDE 372 (509)
Q Consensus 297 ~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~ 372 (509)
++..+..... . ........+.+.+..++|...+....+..||+||+|| +.||+||+.+|.++ ||+|||+.
T Consensus 106 ni~~~~~~~~-~-~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qr----v~lAraL~~~P~llllDEPt~~LD~~ 179 (290)
T PRK13634 106 DICFGPMNFG-V-SEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRR----VAIAGVLAMEPEVLVLDEPTAGLDPK 179 (290)
T ss_pred HHHHHHHHcC-C-CHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHH----HHHHHHHHcCCCEEEEECCcccCCHH
Confidence 7765532111 0 1112223344455555675325567788999999999 99999999999998 99999999
Q ss_pred HH-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 373 TR-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 373 ~r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
++ .+..+|+++.. .+.+++..+|++.....+++++++++.|++++.++.+.
T Consensus 180 ~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 180 GRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99 99999999965 36788889999998877777888888888887655443
No 129
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.84 E-value=4e-21 Score=190.61 Aligned_cols=191 Identities=14% Similarity=0.107 Sum_probs=140.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc--------------eeeecCeEEEEeCCCccCCC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ--------------TLIISEKLVLCDCPGLVFPS 289 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~--------------~~~~~~~i~l~d~pg~~~p~ 289 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|...... ....+..++++.+...+++.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 101 (252)
T TIGR03005 22 SVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPH 101 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCC
Confidence 478999999999999999999999999976 78898888654210 01224568888887667776
Q ss_pred CcccHHHHHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----e
Q 010472 290 FSISRYDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----A 365 (509)
Q Consensus 290 ~~~~~~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----P 365 (509)
. +..+++..+....... ........+.+.+..+++.. +....+..||+||+|| ++||+||+.+|.++ |
T Consensus 102 ~--tv~~nl~~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qr----v~laral~~~p~llllDEP 173 (252)
T TIGR03005 102 K--TVLDNVTEAPVLVLGM-ARAEAEKRAMELLDMVGLAD-KADHMPAQLSGGQQQR----VAIARALAMRPKVMLFDEV 173 (252)
T ss_pred C--cHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCChh-HhhcChhhcCHHHHHH----HHHHHHHHcCCCEEEEeCC
Confidence 6 5566665432100001 11112223444555556665 5567788999999999 99999999999998 9
Q ss_pred CCCCCHHHH-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 366 SSGLPDETR-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 366 tsGLD~~~r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
++|||..++ .+..+|+++.+ .+..++..+|++.....+++.+.+++.|++++.++.+..
T Consensus 174 ~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T TIGR03005 174 TSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234 (252)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999 99999999875 467788888888887766778888888998876655433
No 130
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.84 E-value=4.6e-21 Score=187.20 Aligned_cols=182 Identities=15% Similarity=0.139 Sum_probs=130.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccccee----ee-cCeEEEEeCCCccCCCCcccHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTL----II-SEKLVLCDCPGLVFPSFSISRYDMV 298 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~----~~-~~~i~l~d~pg~~~p~~~~~~~e~v 298 (509)
++.+|++++|+|+||+|||||+++|+|+.+ .|.+.+.|........ .. ...++++.+...+++.+ +..+++
T Consensus 32 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~--tv~~~l 109 (228)
T PRK10584 32 VVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTL--NALENV 109 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCc--CHHHHH
Confidence 467899999999999999999999999976 7999998875432111 11 24588888766666665 455665
Q ss_pred HhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 299 ASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 299 ~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
..+.... .. ........+.+.+..+++.+ +....+..||+||+|| +.||+||+.+|+++ ||+|||+.++
T Consensus 110 ~~~~~~~-~~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Ge~qr----l~la~al~~~p~llllDEPt~~LD~~~~ 182 (228)
T PRK10584 110 ELPALLR-GE-SSRQSRNGAKALLEQLGLGK-RLDHLPAQLSGGEQQR----VALARAFNGRPDVLFADEPTGNLDRQTG 182 (228)
T ss_pred HHHHHhc-CC-CHHHHHHHHHHHHHHcCCHh-HhhCChhhCCHHHHHH----HHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 4432110 00 11112233445555556765 5567788999999999 99999999999998 9999999999
Q ss_pred -HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhccccccc
Q 010472 375 -AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHE 417 (509)
Q Consensus 375 -~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~ 417 (509)
.+..+|+++.. .+.+++...|+....+.| +.+.+++.|++++
T Consensus 183 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~-d~i~~l~~g~i~~ 226 (228)
T PRK10584 183 DKIADLLFSLNREHGTTLILVTHDLQLAARC-DRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHHHhC-CEEEEEECCEEEe
Confidence 99999999864 355666677777777764 5667777777653
No 131
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.84 E-value=4.2e-21 Score=192.02 Aligned_cols=189 Identities=11% Similarity=0.055 Sum_probs=139.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|..... ........++|+++...+++.. +..+++..+.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~--tv~~~~~~~~ 106 (265)
T PRK10253 29 EIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDI--TVQELVARGR 106 (265)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCC--cHHHHHHhCc
Confidence 467899999999999999999999999976 7999998865321 1112234688888887777655 5566665543
Q ss_pred CCcch-h-hhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-H
Q 010472 303 LPIDR-M-TEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-A 375 (509)
Q Consensus 303 ~~~~~-~-~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~ 375 (509)
.+... . .........+.+.+..++|.+ +..+.+..||+||+|| +.||+|++.+|.++ |++|||..++ .
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Gq~qr----v~laral~~~p~llllDEPt~gLD~~~~~~ 181 (265)
T PRK10253 107 YPHQPLFTRWRKEDEEAVTKAMQATGITH-LADQSVDTLSGGQRQR----AWIAMVLAQETAIMLLDEPTTWLDISHQID 181 (265)
T ss_pred ccccccccCCCHHHHHHHHHHHHHcCCHH-HhcCCcccCChHHHHH----HHHHHHHhcCCCEEEEeCccccCCHHHHHH
Confidence 22100 0 000111223344455556765 6677889999999999 99999999999998 9999999999 9
Q ss_pred HHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 376 ARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 376 ~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
+..+|+++.+ .+.+++...|++.....+++.+.+++.|++++.++.
T Consensus 182 l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~ 228 (265)
T PRK10253 182 LLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAP 228 (265)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999875 356778888998887777777788888888776554
No 132
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=2.6e-21 Score=194.99 Aligned_cols=188 Identities=15% Similarity=0.119 Sum_probs=139.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce-eeecCeEEEEeCCC-ccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT-LIISEKLVLCDCPG-LVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~-~~~~~~i~l~d~pg-~~~p~~~~~~~e~v~~g 301 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|....... ...+..++|+.+.. ..++.. ++.+++..+
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~--tv~eni~~~ 106 (279)
T PRK13650 29 HVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGA--TVEDDVAFG 106 (279)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccc--cHHHHHHhh
Confidence 477999999999999999999999999976 899999997643211 12345688888754 244444 566777654
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
..... . ........+.+.+..++|.. +....+..||+||+|| ++||+||+.+|.+| ||+|||..++ .+
T Consensus 107 ~~~~~-~-~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~qr----v~lAral~~~p~lLlLDEPt~~LD~~~~~~l 179 (279)
T PRK13650 107 LENKG-I-PHEEMKERVNEALELVGMQD-FKEREPARLSGGQKQR----VAIAGAVAMRPKIIILDEATSMLDPEGRLEL 179 (279)
T ss_pred HHhCC-C-CHHHHHHHHHHHHHHCCCHh-HhhCCcccCCHHHHHH----HHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence 32111 1 11122233445555566776 6677889999999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 377 RIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 377 ~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
..+|+++.+ .+.+++..+|++....+ ++.+.++..|+++..++.+.
T Consensus 180 ~~~l~~l~~~~g~tilivtH~~~~~~~-~dri~~l~~G~i~~~g~~~~ 226 (279)
T PRK13650 180 IKTIKGIRDDYQMTVISITHDLDEVAL-SDRVLVMKNGQVESTSTPRE 226 (279)
T ss_pred HHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEECCEEEEECCHHH
Confidence 999999975 36778888888888765 55667778888887655443
No 133
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.84 E-value=6.8e-21 Score=189.81 Aligned_cols=177 Identities=15% Similarity=0.117 Sum_probs=135.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
.+.+|++++|+|+||||||||+++|+|+.. .|.+.+.|.... .....++|+.+...+|+.+ ++.+++..+..
T Consensus 34 ~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~----~~~~~i~~v~q~~~l~~~~--tv~enl~~~~~ 107 (257)
T PRK11247 34 HIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA----EAREDTRLMFQDARLLPWK--KVIDNVGLGLK 107 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH----HhhCceEEEecCccCCCCC--cHHHHHHhccc
Confidence 467899999999999999999999999976 788888775421 2235688888876676655 56666655432
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
. ... ..+.+.+..++|.. +....+..||+||+|| +.||+||+.+|.++ ||+|||+.++ .+.+
T Consensus 108 ~-----~~~---~~~~~~l~~~gl~~-~~~~~~~~LSgGqkqr----l~laraL~~~p~lllLDEPt~~LD~~~~~~l~~ 174 (257)
T PRK11247 108 G-----QWR---DAALQALAAVGLAD-RANEWPAALSGGQKQR----VALARALIHRPGLLLLDEPLGALDALTRIEMQD 174 (257)
T ss_pred c-----hHH---HHHHHHHHHcCChh-HhcCChhhCCHHHHHH----HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 1 111 22334444455665 5567788999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 379 ILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 379 lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
+|+++.. .+..++...|++.....+++.+.+++.|.++..++-
T Consensus 175 ~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 218 (257)
T PRK11247 175 LIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTV 218 (257)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeccc
Confidence 9999854 456778888888887666677788888888775543
No 134
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=3.5e-21 Score=193.63 Aligned_cols=188 Identities=13% Similarity=0.047 Sum_probs=137.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce--eeecCeEEEEeCCC-ccCCCCcccHHHHHHh
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT--LIISEKLVLCDCPG-LVFPSFSISRYDMVAS 300 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~--~~~~~~i~l~d~pg-~~~p~~~~~~~e~v~~ 300 (509)
++.+|++++|+|+||+|||||+++|+|+.+ .|.+.+.|....... ......++|+.+.. ..++.. +..+++..
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~--tv~enl~~ 101 (274)
T PRK13644 24 VIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGR--TVEEDLAF 101 (274)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccc--hHHHHHHh
Confidence 478999999999999999999999999976 799999987543211 12345688887754 233333 55666654
Q ss_pred ccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-H
Q 010472 301 GVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-A 375 (509)
Q Consensus 301 g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~ 375 (509)
+..... . ........+.+.+..++|.. +....+..||+||+|| +.||+||+.+|.++ ||+|||+.++ .
T Consensus 102 ~~~~~~-~-~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qr----v~laral~~~p~lllLDEPt~gLD~~~~~~ 174 (274)
T PRK13644 102 GPENLC-L-PPIEIRKRVDRALAEIGLEK-YRHRSPKTLSGGQGQC----VALAGILTMEPECLIFDEVTSMLDPDSGIA 174 (274)
T ss_pred hHHHcC-C-CHHHHHHHHHHHHHHCCCHH-HhcCCcccCCHHHHHH----HHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 321110 1 11122233444455556766 6677889999999999 99999999999998 9999999999 9
Q ss_pred HHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 376 ARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 376 ~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
++.+|++++..+.+++..+|++...+. ++.+++++.|++++.++.+.
T Consensus 175 l~~~l~~l~~~g~til~~tH~~~~~~~-~d~v~~l~~G~i~~~g~~~~ 221 (274)
T PRK13644 175 VLERIKKLHEKGKTIVYITHNLEELHD-ADRIIVMDRGKIVLEGEPEN 221 (274)
T ss_pred HHHHHHHHHhCCCEEEEEecCHHHHhh-CCEEEEEECCEEEEECCHHH
Confidence 999999987656667777888888865 66777778888877655443
No 135
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.84 E-value=6.5e-21 Score=187.45 Aligned_cols=183 Identities=14% Similarity=0.061 Sum_probs=130.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEe-CCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCD-CPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d-~pg~~~p~~~~~~~e~v~~g~ 302 (509)
.+.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|.............++|+. +...+++.+ +..+++....
T Consensus 43 ~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~--tv~e~l~~~~ 120 (236)
T cd03267 43 TIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDL--PVIDSFYLLA 120 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCC--cHHHHHHHHH
Confidence 567999999999999999999999999976 79999988643221222344677775 555556666 4444443221
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHH
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AAR 377 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~ 377 (509)
.. ... ........+...+..+++.+ +....+..||+||+|| +.||+||+.+|+++ |++|||+..+ .+.
T Consensus 121 ~~-~~~-~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qr----l~la~al~~~p~llllDEPt~~LD~~~~~~l~ 193 (236)
T cd03267 121 AI-YDL-PPARFKKRLDELSELLDLEE-LLDTPVRQLSLGQRMR----AEIAAALLHEPEILFLDEPTIGLDVVAQENIR 193 (236)
T ss_pred HH-cCC-CHHHHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHH----HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH
Confidence 10 000 11111222333444445665 5566778899999999 99999999999998 9999999999 999
Q ss_pred HHHHHhhc-CCccEEEcCCCCChhhccchhhHhhccccccc
Q 010472 378 IILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHE 417 (509)
Q Consensus 378 ~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~ 417 (509)
.+|+.+.+ ++..++...|.......+++.+.++..|++++
T Consensus 194 ~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 234 (236)
T cd03267 194 NFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLY 234 (236)
T ss_pred HHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 99999865 45677888888888777777777777777754
No 136
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.84 E-value=3.5e-21 Score=173.94 Aligned_cols=190 Identities=13% Similarity=0.118 Sum_probs=153.3
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce-------eeecCeEEEEeCCCccCCCCcccHHHH
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT-------LIISEKLVLCDCPGLVFPSFSISRYDM 297 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~-------~~~~~~i~l~d~pg~~~p~~~~~~~e~ 297 (509)
.+.|+.+.++||+|+||||||+.|.-+.. +|+..+.|...++.. ..++.+++++.|...+||.+ ++.++
T Consensus 25 ~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphl--tv~en 102 (242)
T COG4161 25 CPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHL--TVQEN 102 (242)
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchh--HHHHH
Confidence 46799999999999999999998875543 788888776544432 34567889999999999998 56666
Q ss_pred HHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHH
Q 010472 298 VASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDET 373 (509)
Q Consensus 298 v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~ 373 (509)
+...-.....+ ...++...+.+.+.++.|.+ +.++.|-.|||||+|| ++|||||+.+|.+| ||++|||+-
T Consensus 103 lieap~kv~gl-~~~qa~~~a~ellkrlrl~~-~adr~plhlsggqqqr----vaiaralmmkpqvllfdeptaaldpei 176 (242)
T COG4161 103 LIEAPCRVLGL-SKDQALARAEKLLKRLRLKP-YADRYPLHLSGGQQQR----VAIARALMMEPQVLLFDEPTAALDPEI 176 (242)
T ss_pred HHhhhHHHhCC-CHHHHHHHHHHHHHHhcccc-ccccCceecccchhhh----HHHHHHHhcCCcEEeecCcccccCHHH
Confidence 65442221111 12344555666666667777 8888999999999999 99999999999998 999999998
Q ss_pred H-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 374 R-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 374 r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
. .+..+|+++...++.-+..+|....+.-.+-.++.|+.|.|++.++.+--
T Consensus 177 taqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f 228 (242)
T COG4161 177 TAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence 8 99999999999999999999999999999999999999999998876543
No 137
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=7.4e-22 Score=183.76 Aligned_cols=203 Identities=14% Similarity=0.153 Sum_probs=149.5
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
.+++|.+++|||||||||||||.+++.+.+ +|.+.+.|..... ....+.+.+.++.|...+.-.+ ++.+++.+|.
T Consensus 23 ~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rl--TV~dLv~FGR 100 (252)
T COG4604 23 DIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRL--TVRDLVGFGR 100 (252)
T ss_pred eecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhhee--EHHHHhhcCC
Confidence 478999999999999999999999999987 8999999976432 2233445566666655554444 7889999999
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHH
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AAR 377 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~ 377 (509)
+|..+.+-..+....+.+.++.+.|.+ +.+++..+|||||+|| .-+|..+|++..|+ |-++||-.+. .++
T Consensus 101 fPYSqGRlt~eD~~~I~~aieyl~L~~-l~dryLd~LSGGQrQR----AfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iM 175 (252)
T COG4604 101 FPYSQGRLTKEDRRIINEAIEYLHLED-LSDRYLDELSGGQRQR----AFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIM 175 (252)
T ss_pred CcccCCCCchHHHHHHHHHHHHhcccc-hHHHhHHhcccchhhh----hhhheeeeccCcEEEecCcccccchHHHHHHH
Confidence 998765544344444444444444444 4445567899999999 99999999999997 9999999999 999
Q ss_pred HHHHHhhcC-CccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhc
Q 010472 378 IILKDFIDG-KLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLD 442 (509)
Q Consensus 378 ~lLkd~~~g-kl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (509)
.+|+.+.+. +-.++..-|+.+.|.-.++.+..+..|+++-.++++..-+. ..+++++|
T Consensus 176 k~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~-------~~L~eiyd 234 (252)
T COG4604 176 KILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP-------EILSEIYD 234 (252)
T ss_pred HHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH-------HHHHHHhc
Confidence 999999762 33445555777777766666666777777777776666553 34566555
No 138
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=3.8e-21 Score=193.85 Aligned_cols=188 Identities=15% Similarity=0.126 Sum_probs=139.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce-eeecCeEEEEeCCC-ccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT-LIISEKLVLCDCPG-LVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~-~~~~~~i~l~d~pg-~~~p~~~~~~~e~v~~g 301 (509)
++.+|++++|+|+||+|||||+++|+|+.+ .|.+.+.|....... ......++|+.+.. ..++.. ++.+++..+
T Consensus 29 ~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~--tv~enl~~~ 106 (279)
T PRK13635 29 SVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGA--TVQDDVAFG 106 (279)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccc--cHHHHHhhh
Confidence 477899999999999999999999999987 799999997643211 12345688888864 244444 667777654
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
..... . ........+.+.+..++|.. +....+..||+||+|| +.||+||+.+|+++ |++|||+.++ .+
T Consensus 107 ~~~~~-~-~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LS~G~~qr----v~laral~~~p~lllLDEPt~gLD~~~~~~l 179 (279)
T PRK13635 107 LENIG-V-PREEMVERVDQALRQVGMED-FLNREPHRLSGGQKQR----VAIAGVLALQPDIIILDEATSMLDPRGRREV 179 (279)
T ss_pred HhhCC-C-CHHHHHHHHHHHHHHcCChh-hhhCCcccCCHHHHHH----HHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 32111 1 11122233444555556765 6677889999999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhcC-CccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 377 RIILKDFIDG-KLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 377 ~~lLkd~~~g-kl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
..+|+.+.+. +.+++...|++...+. ++.+++++.|++++.++.+.
T Consensus 180 ~~~l~~l~~~~~~tilivsH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 226 (279)
T PRK13635 180 LETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEE 226 (279)
T ss_pred HHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHH
Confidence 9999999763 6777777888888776 66777777888877665443
No 139
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=4.3e-21 Score=190.41 Aligned_cols=190 Identities=14% Similarity=0.126 Sum_probs=136.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCcccc---cceeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKH---FQTLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~---~~~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
++.+|++++|+|+||+|||||+++|+|+.. .|.+.+.|.... ......+..++++.+...+|+.+ +..
T Consensus 26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~--tv~ 103 (253)
T PRK14267 26 KIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHL--TIY 103 (253)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCC--cHH
Confidence 467899999999999999999999999974 689999987542 11112345688888877777766 455
Q ss_pred HHHHhccCCcc---hhhhHHHHHHHHHHhCCcc-chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCC
Q 010472 296 DMVASGVLPID---RMTEHRQAVQVVANRVPRH-VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASS 367 (509)
Q Consensus 296 e~v~~g~~~~~---~~~~~~~~~~~i~~~l~~~-~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----Pts 367 (509)
+++..+..... ........+..+.+.++.. .+.. .....+..||+||+|| ++||+||+.+|+++ |++
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~G~~qr----v~laral~~~p~llllDEP~~ 178 (253)
T PRK14267 104 DNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD-RLNDYPSNLSGGQRQR----LVIARALAMKPKILLMDEPTA 178 (253)
T ss_pred HHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh-hhccChhhCCHHHHHH----HHHHHHHhcCCCEEEEcCCCc
Confidence 66554321110 0001112223333333321 1122 3456678899999999 99999999999998 999
Q ss_pred CCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 368 GLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 368 GLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
|||+.++ .+..+|+++.++ .+++...|++.....+++.+.+++.|++++.++.+.
T Consensus 179 ~LD~~~~~~l~~~l~~~~~~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 179 NIDPVGTAKIEELLFELKKE-YTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred cCCHHHHHHHHHHHHHHhhC-CEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9999999 999999999775 678888888888776667778888888887655543
No 140
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=3e-21 Score=195.24 Aligned_cols=189 Identities=10% Similarity=0.059 Sum_probs=141.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc-----eeeecCeEEEEeCCC--ccCCCCcccHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ-----TLIISEKLVLCDCPG--LVFPSFSISRYD 296 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~-----~~~~~~~i~l~d~pg--~~~p~~~~~~~e 296 (509)
++.+|+++||+|+||||||||+++|+|+.. .|.+.+.|...... ....+..++|++|.. .+|+ .++.+
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~---~tv~e 105 (286)
T PRK13646 29 EFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE---DTVER 105 (286)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch---hhHHH
Confidence 477899999999999999999999999977 79999998764321 112355788888853 3333 25667
Q ss_pred HHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHH
Q 010472 297 MVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDE 372 (509)
Q Consensus 297 ~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~ 372 (509)
++..+..... . ........+.+.+..++|...+....+..||+||+|| ++||+||+.+|+++ |++|||+.
T Consensus 106 ~i~~~~~~~~-~-~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qr----v~laraL~~~p~illlDEPt~~LD~~ 179 (286)
T PRK13646 106 EIIFGPKNFK-M-NLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRK----IAIVSILAMNPDIIVLDEPTAGLDPQ 179 (286)
T ss_pred HHHhhHHHcC-C-CHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHH----HHHHHHHHhCCCEEEEECCcccCCHH
Confidence 7765432110 1 1112233444555555675225567788999999999 99999999999998 99999999
Q ss_pred HH-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 373 TR-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 373 ~r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
++ .+..+|+++.. .+.+++..+|++.....+++.++++..|++++.++.+.
T Consensus 180 ~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 232 (286)
T PRK13646 180 SKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKE 232 (286)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99 99999999864 46788889999998877777888888888887665543
No 141
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.84 E-value=1e-19 Score=167.19 Aligned_cols=155 Identities=41% Similarity=0.602 Sum_probs=116.5
Q ss_pred HHHHHHHHHhh-CCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCeEEEeeh
Q 010472 71 MWRQLWRVLER-SDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWSA 149 (509)
Q Consensus 71 ~wrql~rvie~-sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~gi~~if~Sa 149 (509)
+||++++.+.+ +|+||+|+|+++|.......+..++.. .++|+++|+||+||++......|..++...+..++++||
T Consensus 1 ~~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa 78 (156)
T cd01859 1 MWKRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLE--LGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSA 78 (156)
T ss_pred CHHHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHh--CCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEc
Confidence 59999997776 999999999999987776666655542 478999999999999876667787666666677788887
Q ss_pred hhhHHhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccccccCccCCC
Q 010472 150 KAASAALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVDESFAGNVAPK 229 (509)
Q Consensus 150 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~ 229 (509)
+ .|. |.++|.+.+...... ...
T Consensus 79 ~------~~~-----------------------gi~~L~~~l~~~~~~-----------------------------~~~ 100 (156)
T cd01859 79 K------ERL-----------------------GTKILRRTIKELAKI-----------------------------DGK 100 (156)
T ss_pred c------ccc-----------------------cHHHHHHHHHHHHhh-----------------------------cCC
Confidence 5 222 345676666543210 012
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeecCeEEEEeCCCc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGL 285 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~ 285 (509)
...+.++|.+|+|||||+|.|.+.....+...+|.|.+.+.......+.++|+||+
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpGi 156 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPGV 156 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcCC
Confidence 35679999999999999999998766666778888877665555567889999995
No 142
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.84 E-value=1.1e-19 Score=167.20 Aligned_cols=153 Identities=37% Similarity=0.591 Sum_probs=111.0
Q ss_pred CEEEEEeeCCCCCCCCChhHH-HHHHHHhcCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-CCeEEEeehhhhHHhhhccc
Q 010472 83 DLIVMVVDARDPLFYRCPDLE-AYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDH-DILFVFWSAKAASAALEGKA 160 (509)
Q Consensus 83 DvVl~VvDaR~Pl~~~~~~le-~~v~~~~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~-gi~~if~Sa~~~~~~~~g~~ 160 (509)
|+||+|+|+++|..+....++ .++. ..++|+|+|+||+||++++....|..+|.+. +..++++||+ +|.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~--~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~------~~~- 71 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIK--EKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISAT------NGQ- 71 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHh--cCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEecc------CCc-
Confidence 899999999999998887776 3333 3579999999999999988888898777654 4456777875 333
Q ss_pred ccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccccccCccCCCCcEEEEEecCC
Q 010472 161 VSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVDESFAGNVAPKNVIVGFVGYPN 240 (509)
Q Consensus 161 l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~vglvG~nG 240 (509)
+.++|.+.+.+...+........ .....+..++++|.||
T Consensus 72 ----------------------gi~~L~~~i~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~G~~~ 110 (155)
T cd01849 72 ----------------------GIEKKESAFTKQTNSNLKSYAKD-------------------GKLKKSITVGVIGYPN 110 (155)
T ss_pred ----------------------ChhhHHHHHHHHhHHHHHHHHhc-------------------cccccCcEEEEEccCC
Confidence 23455555433211110100000 0123467899999999
Q ss_pred CCHhHHHHHHhcCCcceEEeeCCcccccceeeecCeEEEEeCCCc
Q 010472 241 VGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGL 285 (509)
Q Consensus 241 aGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~ 285 (509)
+|||||+|+|.+.....+...+|+|+..+.......+.++||||+
T Consensus 111 ~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtPG~ 155 (155)
T cd01849 111 VGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLDNKIKLLDTPGI 155 (155)
T ss_pred CCHHHHHHHHHccccccccCCCCcccceEEEEecCCEEEEECCCC
Confidence 999999999999876667778899988887777778999999995
No 143
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=3.1e-21 Score=187.99 Aligned_cols=186 Identities=15% Similarity=0.105 Sum_probs=154.7
Q ss_pred CCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce-----eeecCeEEEEeCCCccCCCCcccHHHHHHh
Q 010472 228 PKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT-----LIISEKLVLCDCPGLVFPSFSISRYDMVAS 300 (509)
Q Consensus 228 ~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~-----~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~ 300 (509)
+...+++|.|++|+|||||||+|+|+.+ .|.+.++|.+..-.. ....+.++|++|..-+||.+ ++..|+.+
T Consensus 22 p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~--tVrgNL~Y 99 (352)
T COG4148 22 PARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHY--TVRGNLRY 99 (352)
T ss_pred CCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccce--EEecchhh
Confidence 3447899999999999999999999988 799999997743221 12356799999999999999 56677777
Q ss_pred ccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-H
Q 010472 301 GVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-A 375 (509)
Q Consensus 301 g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~ 375 (509)
|..... ....+.+.+. +++.+ +..++|..||||++|| ++|.|||...|.+| |.+.||...+ .
T Consensus 100 G~~~~~-----~~~fd~iv~l---LGI~h-LL~R~P~~LSGGEkQR----VAIGRALLt~P~LLLmDEPLaSLD~~RK~E 166 (352)
T COG4148 100 GMWKSM-----RAQFDQLVAL---LGIEH-LLDRYPGTLSGGEKQR----VAIGRALLTAPELLLMDEPLASLDLPRKRE 166 (352)
T ss_pred hhcccc-----hHhHHHHHHH---hCcHH-HHhhCCCccCcchhhH----HHHHHHHhcCCCeeeecCchhhcccchhhH
Confidence 765431 1223334444 45777 6678899999999999 99999999999998 9999999888 9
Q ss_pred HHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcC
Q 010472 376 ARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPA 428 (509)
Q Consensus 376 ~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (509)
++-+|..+.+ -++.++...|.+++....++.+++++.|+..++++.+..+++.
T Consensus 167 ilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 167 ILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred HHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 9999999976 5899999999999999999999999999999999998888763
No 144
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=7.1e-21 Score=184.16 Aligned_cols=180 Identities=17% Similarity=0.136 Sum_probs=133.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc-----eeeecCeEEEEeCCCccCCCCcccHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ-----TLIISEKLVLCDCPGLVFPSFSISRYDMV 298 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~-----~~~~~~~i~l~d~pg~~~p~~~~~~~e~v 298 (509)
++.+ ++++|+|+||+|||||+++|+|+.+ .|.+.+.|...... .......++|+++...+++.+ +..+++
T Consensus 20 ~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--t~~~~l 96 (214)
T cd03297 20 DLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHL--NVRENL 96 (214)
T ss_pred EEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCC--CHHHHH
Confidence 4678 9999999999999999999999976 78888888653210 111245688888877777666 455555
Q ss_pred HhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 299 ASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 299 ~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
..+.... ........+.+.+..+++.. +....+..||+||+|| +.||+|++.+|.++ ||+|||..++
T Consensus 97 ~~~~~~~----~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----v~la~al~~~p~llllDEPt~~LD~~~~ 167 (214)
T cd03297 97 AFGLKRK----RNREDRISVDELLDLLGLDH-LLNRYPAQLSGGEKQR----VALARALAAQPELLLLDEPFSALDRALR 167 (214)
T ss_pred HHHHhhC----CHHHHHHHHHHHHHHcCCHh-HhhcCcccCCHHHHHH----HHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 4432111 01111223444455556665 5567788999999999 99999999999998 9999999999
Q ss_pred -HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhccccccc
Q 010472 375 -AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHE 417 (509)
Q Consensus 375 -~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~ 417 (509)
.+..+|+++.+ .+.+++...|++.....+++.+.++..|++++
T Consensus 168 ~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 168 LQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred HHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999865 35667777898888877777788888887754
No 145
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.83 E-value=8.1e-21 Score=188.21 Aligned_cols=187 Identities=10% Similarity=0.034 Sum_probs=136.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|..... ........++|+.+...+++.+ +..+++..+..
T Consensus 18 ~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~--tv~~nl~~~~~ 95 (248)
T PRK03695 18 EVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAM--PVFQYLTLHQP 95 (248)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCc--cHHHHHHhcCc
Confidence 477899999999999999999999999976 7899998865321 1111233477777754444444 55666654421
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHH-------cCCce----eCCCCCHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCA-------SRGYV----ASSGLPDE 372 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~-------~p~lL----PtsGLD~~ 372 (509)
.. . ........+.+.+..+++.. +....+..||+||+|| +.||+||+. +|.++ |++|||+.
T Consensus 96 ~~--~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----v~la~al~~~~~~~~p~p~llllDEPt~~LD~~ 167 (248)
T PRK03695 96 DK--T-RTEAVASALNEVAEALGLDD-KLGRSVNQLSGGEWQR----VRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVA 167 (248)
T ss_pred cC--C-CcHHHHHHHHHHHHHcCCHh-HhcCCcccCCHHHHHH----HHHHHHHhccccccCCCCCEEEEcCCcccCCHH
Confidence 11 0 11111233444455556665 5567788999999999 999999997 56887 99999999
Q ss_pred HH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 373 TR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 373 ~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
.+ .+..+|+++.+.+.+++...|++.....+++.+.+++.|++++.++.+
T Consensus 168 ~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 218 (248)
T PRK03695 168 QQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRD 218 (248)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99 999999999765677888889988887778888888999988765543
No 146
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.83 E-value=5.3e-21 Score=194.26 Aligned_cols=207 Identities=14% Similarity=0.116 Sum_probs=170.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCcccccce----eeecCeEEE--EeCCCccCCCCcccHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHFQT----LIISEKLVL--CDCPGLVFPSFSISRYDMV 298 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~~~----~~~~~~i~l--~d~pg~~~p~~~~~~~e~v 298 (509)
++..|+.+||||.+|||||||=.+|+++.. .|.+.+.|.+.+... ..++..+.+ .|--|.+-|.+ ++.+.+
T Consensus 309 ~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRm--tV~qII 386 (534)
T COG4172 309 TLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRM--TVGQII 386 (534)
T ss_pred EecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCccc--CHHHHh
Confidence 578999999999999999999999999988 899999998765322 233444444 45567777777 666777
Q ss_pred HhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 299 ASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 299 ~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
..|+.-........+..+.+.+.+..++|...-..++|++.||||+|| ++||||++.+|.++ ||++||-.-+
T Consensus 387 ~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQR----IAIARAliLkP~~i~LDEPTSALD~SVQ 462 (534)
T COG4172 387 EEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQR----IAIARALILKPELILLDEPTSALDRSVQ 462 (534)
T ss_pred hhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhH----HHHHHHHhcCCcEEEecCCchHhhHHHH
Confidence 777654332223345666777778788887767789999999999999 99999999999998 9999999988
Q ss_pred -HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhc
Q 010472 375 -AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLD 442 (509)
Q Consensus 375 -~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (509)
.+.++|+++.+ ..+.|++..|++....-.|+++.+|+.|+++|.++++..+.+..+ ++.+.++.
T Consensus 463 aQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~----~YT~~L~~ 528 (534)
T COG4172 463 AQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQH----EYTRALLA 528 (534)
T ss_pred HHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCc----HHHHHHHH
Confidence 99999999976 689999999999999999999999999999999999999987664 55555544
No 147
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.83 E-value=1.3e-20 Score=183.89 Aligned_cols=184 Identities=13% Similarity=0.067 Sum_probs=134.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-----ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHh
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-----TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVAS 300 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-----~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~ 300 (509)
++.+|++++|+|+||||||||+++|+|..+ .|.+.+.|..... ...+..++++++...+|+.+ +..+++..
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~--~~~~~~i~~~~q~~~~~~~~--tv~enl~~ 104 (226)
T cd03234 29 HVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP--DQFQKCVAYVRQDDILLPGL--TVRETLTY 104 (226)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh--HHhcccEEEeCCCCccCcCC--cHHHHHHH
Confidence 477999999999999999999999999865 6888888865432 23455788998877777776 45565544
Q ss_pred ccCCc-chhhhHHHHHHHHHH-hCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 301 GVLPI-DRMTEHRQAVQVVAN-RVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 301 g~~~~-~~~~~~~~~~~~i~~-~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
+.... ............+.. .++.+++.. +....+..||+||+|| ++||+||+.+|.++ |++|||+.++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----l~laral~~~p~illlDEP~~gLD~~~~ 179 (226)
T cd03234 105 TAILRLPRKSSDAIRKKRVEDVLLRDLALTR-IGGNLVKGISGGERRR----VSIAVQLLWDPKVLILDEPTSGLDSFTA 179 (226)
T ss_pred HHHhhcccccchHHHHHHHHHHHHHhhcchh-hhcccccCcCHHHHHH----HHHHHHHHhCCCEEEEeCCCcCCCHHHH
Confidence 32110 000000011112222 455555655 5566788999999999 99999999999998 9999999999
Q ss_pred -HHHHHHHHhhcCCccEEEcCCCC-ChhhccchhhHhhcccccccC
Q 010472 375 -AARIILKDFIDGKLPHFEMPPGM-SHEEVGMEDTQASSLLELHES 418 (509)
Q Consensus 375 -~~~~lLkd~~~gkl~~~~~pp~~-~~~~~~~~~~~~~~~~~~~~~ 418 (509)
.+..+|+++.+.+..++...|.. .....+++.+.++..|++++.
T Consensus 180 ~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~ 225 (226)
T cd03234 180 LNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYS 225 (226)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEec
Confidence 99999999876556777788887 466777778888888887653
No 148
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=8.3e-21 Score=188.33 Aligned_cols=205 Identities=16% Similarity=0.141 Sum_probs=142.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCccccc---ceeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHF---QTLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~---~~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|..... .....+..++|+.+...+|+.+ +..
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~--tv~ 103 (252)
T PRK14256 26 DFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAM--SIY 103 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcC--cHH
Confidence 478999999999999999999999999963 6999999876421 1112355688888877777766 455
Q ss_pred HHHHhccCCcchh--hhHHHHHHHHHHhCCccc-hhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCC
Q 010472 296 DMVASGVLPIDRM--TEHRQAVQVVANRVPRHV-IENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSG 368 (509)
Q Consensus 296 e~v~~g~~~~~~~--~~~~~~~~~i~~~l~~~~-L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsG 368 (509)
+++..+....... ......+..+.+.+.... +.. .....+..||+||+|| ++||+||+.+|+++ |++|
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~G~~qr----l~laral~~~p~llllDEP~~g 178 (252)
T PRK14256 104 DNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-RLKSNAMELSGGQQQR----LCIARTIAVKPEVILMDEPASA 178 (252)
T ss_pred HHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-HhhCCcCcCCHHHHHH----HHHHHHHhcCCCEEEEcCCccc
Confidence 6655432211100 111122233333333211 112 3345678899999999 99999999999998 9999
Q ss_pred CCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhc
Q 010472 369 LPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLD 442 (509)
Q Consensus 369 LD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (509)
||..++ .+..+|+.+.++ .+++...|.+.....+++.+.+++.|++++.++.+....... .+..++.|.
T Consensus 179 LD~~~~~~l~~~l~~~~~~-~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~----~~~~~~~~~ 248 (252)
T PRK14256 179 LDPISTLKIEELIEELKEK-YTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPE----KKQTEDYIT 248 (252)
T ss_pred CCHHHHHHHHHHHHHHHhC-CcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCCC----cHHHHHHHh
Confidence 999999 999999999876 578888888888766667777888888887766554433211 244555554
No 149
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.6e-20 Score=186.19 Aligned_cols=205 Identities=16% Similarity=0.097 Sum_probs=142.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCC---c----ceEEeeCCccccc---ceeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQK---R----TGVTSTPGKTKHF---QTLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~---~----~g~~~~~G~t~~~---~~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
++.+|++++|+|+||||||||+++|+|+. + .|.+.+.|..... ....++..++++.+...+|+ . ++.
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~--tv~ 103 (252)
T PRK14239 27 DFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-M--SIY 103 (252)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc-C--cHH
Confidence 46789999999999999999999999973 2 6999999875421 11123456888888766665 4 566
Q ss_pred HHHHhccC--CcchhhhHHHHHHHHHHhCCcc-chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCC
Q 010472 296 DMVASGVL--PIDRMTEHRQAVQVVANRVPRH-VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSG 368 (509)
Q Consensus 296 e~v~~g~~--~~~~~~~~~~~~~~i~~~l~~~-~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsG 368 (509)
+++..+.. ...........+..+.+.+... .+.. +....+..||+||+|| ++||+||+.+|.++ |++|
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~G~~qr----v~laral~~~p~llllDEPt~~ 178 (252)
T PRK14239 104 ENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD-RLHDSALGLSGGQQQR----VCIARVLATSPKIILLDEPTSA 178 (252)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHH-HHhcCcccCCHHHHHH----HHHHHHHhcCCCEEEEcCCccc
Confidence 66654321 1100000112223333333321 1222 3456788999999999 99999999999998 9999
Q ss_pred CCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhcc
Q 010472 369 LPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDD 443 (509)
Q Consensus 369 LD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (509)
||..++ .+..+|+.+.++ .+++...|++.....+++.+.+++.|++++.++.+...+.+. .+.+.+.|++
T Consensus 179 LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~----~~~~~~~~~~ 249 (252)
T PRK14239 179 LDPISAGKIEETLLGLKDD-YTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNPK----HKETEDYISG 249 (252)
T ss_pred cCHHHHHHHHHHHHHHhhC-CeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCC----CHHHHHHHhh
Confidence 999999 999999999765 678888888888777777888888888888766655433221 2455555554
No 150
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.83 E-value=8e-21 Score=189.57 Aligned_cols=203 Identities=14% Similarity=0.052 Sum_probs=147.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-----ceEEeeCCcccccc------eeeecCeEEEEeCCCccCCCCcccH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-----TGVTSTPGKTKHFQ------TLIISEKLVLCDCPGLVFPSFSISR 294 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-----~g~~~~~G~t~~~~------~~~~~~~i~l~d~pg~~~p~~~~~~ 294 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|...... .......++|+++...+|+.+ +.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--tv 103 (262)
T PRK09984 26 NIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRL--SV 103 (262)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCC--cH
Confidence 467899999999999999999999999975 38999998654221 012234688888876667766 55
Q ss_pred HHHHHhccCCcc-------hhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce---
Q 010472 295 YDMVASGVLPID-------RMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV--- 364 (509)
Q Consensus 295 ~e~v~~g~~~~~-------~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL--- 364 (509)
.+++..+..... .... ......+.+.+..+++.. +....+..||+||+|| +.||+||+.+|.++
T Consensus 104 ~e~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----v~laral~~~p~llllD 177 (262)
T PRK09984 104 LENVLIGALGSTPFWRTCFSWFT-REQKQRALQALTRVGMVH-FAHQRVSTLSGGQQQR----VAIARALMQQAKVILAD 177 (262)
T ss_pred HHHHHhhhcccccchhhhccccc-HHHHHHHHHHHHHcCCHH-HHhCCccccCHHHHHH----HHHHHHHhcCCCEEEec
Confidence 666655432100 0001 112234455555566765 5667788999999999 99999999999998
Q ss_pred -eCCCCCHHHH-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHh
Q 010472 365 -ASSGLPDETR-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVL 441 (509)
Q Consensus 365 -PtsGLD~~~r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (509)
|++|||...+ .+..+|+++.+ .+..++..+|++.....+++.+.+++.|+++..++.+... .+.+++++
T Consensus 178 EPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~--------~~~~~~~~ 249 (262)
T PRK09984 178 EPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFD--------NERFDHLY 249 (262)
T ss_pred CccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHhc--------cHHHHHHH
Confidence 9999999999 99999999975 4678888889988877777788888888887665544321 24566766
Q ss_pred ccC
Q 010472 442 DDL 444 (509)
Q Consensus 442 ~~~ 444 (509)
..+
T Consensus 250 ~~~ 252 (262)
T PRK09984 250 RSI 252 (262)
T ss_pred hhh
Confidence 644
No 151
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.83 E-value=9.2e-21 Score=188.51 Aligned_cols=190 Identities=14% Similarity=0.163 Sum_probs=139.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc-eeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ-TLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~-~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
.+.+|++++|+|+||+|||||+++|+|+.+ .|.+.+.|...... .......++|+.+...+++.+ ++.+++..+.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~--tv~e~l~~~~ 100 (256)
T TIGR03873 23 TAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL--TVRDVVALGR 100 (256)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCC--CHHHHHHhcc
Confidence 467899999999999999999999999976 79999988654221 112234577887765444444 5666665542
Q ss_pred CCcchh--hhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-H
Q 010472 303 LPIDRM--TEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-A 375 (509)
Q Consensus 303 ~~~~~~--~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~ 375 (509)
...... .........+.+.+..+++.+ +....+..||+||+|| ++||+|++.+|.++ |++|||..++ .
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----l~la~al~~~p~llllDEPt~~LD~~~~~~ 175 (256)
T TIGR03873 101 IPHRSLWAGDSPHDAAVVDRALARTELSH-LADRDMSTLSGGERQR----VHVARALAQEPKLLLLDEPTNHLDVRAQLE 175 (256)
T ss_pred hhhhhhccCCCHHHHHHHHHHHHHcCcHh-hhcCCcccCCHHHHHH----HHHHHHHhcCCCEEEEcCccccCCHHHHHH
Confidence 211000 001112233445555556665 5667788999999999 99999999999998 9999999999 9
Q ss_pred HHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 376 ARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 376 ~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
+..+|+.+.+.+.+++...|++.....+++.+.++..|++++.++.+
T Consensus 176 l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 222 (256)
T TIGR03873 176 TLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPR 222 (256)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHH
Confidence 99999999764567888889999987777788888888888765543
No 152
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.6e-20 Score=187.09 Aligned_cols=190 Identities=17% Similarity=0.111 Sum_probs=135.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCcccccc---eeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHFQ---TLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~~---~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
++.+|+++||+|+||||||||+++|+|+.. .|++.+.|...... ....+..++|+.+...+|+ . +..
T Consensus 34 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~--tv~ 110 (258)
T PRK14268 34 QIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-M--SIY 110 (258)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-c--cHH
Confidence 478999999999999999999999999863 79999988654211 1123456888888665665 4 556
Q ss_pred HHHHhccCCcc-hhhhHHHHHHHHHHhCCccc-hhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCC
Q 010472 296 DMVASGVLPID-RMTEHRQAVQVVANRVPRHV-IENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGL 369 (509)
Q Consensus 296 e~v~~g~~~~~-~~~~~~~~~~~i~~~l~~~~-L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGL 369 (509)
+++..+..... ........+..+.+.++... +.. +....+..||+||+|| ++||+||+.+|.++ ||+||
T Consensus 111 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LSgG~~qr----v~laral~~~p~llllDEPt~~L 185 (258)
T PRK14268 111 DNVAYGPRIHGANKKDLDGVVENALRSAALWDETSD-RLKSPALSLSGGQQQR----LCIARTLAVKPKIILFDEPTSAL 185 (258)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhh-hhcCChhhCCHHHHHH----HHHHHHHHcCCCEEEEeCCCccc
Confidence 66654321000 00011122233444433211 122 3456678899999999 99999999999998 99999
Q ss_pred CHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 370 PDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 370 D~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
|..++ .+..+|+.+.+| .+++..+|++.....+++.+.+++.|++++.++.+..
T Consensus 186 D~~~~~~l~~~l~~l~~~-~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 186 DPISTARIEDLIMNLKKD-YTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred CHHHHHHHHHHHHHHhhC-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999 999999998765 6778888888887777788888888998876655433
No 153
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=5.1e-21 Score=192.48 Aligned_cols=188 Identities=14% Similarity=0.132 Sum_probs=139.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce---eeecCeEEEEeCCC--ccCCCCcccHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT---LIISEKLVLCDCPG--LVFPSFSISRYDMV 298 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~---~~~~~~i~l~d~pg--~~~p~~~~~~~e~v 298 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|....... ......++|+.+.. .+++ . ++.+++
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~--tv~e~i 100 (275)
T PRK13639 24 KAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFA-P--TVEEDV 100 (275)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhcc-c--cHHHHH
Confidence 477999999999999999999999999987 799999997643111 12345688888864 2332 3 566666
Q ss_pred HhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 299 ASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 299 ~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
..+.... .. ........+.+.+..++|.. +....+..||+||+|| +.||+||+.+|.++ ||+|||..++
T Consensus 101 ~~~~~~~-~~-~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LS~Gq~qr----v~laral~~~p~llllDEPt~gLD~~~~ 173 (275)
T PRK13639 101 AFGPLNL-GL-SKEEVEKRVKEALKAVGMEG-FENKPPHHLSGGQKKR----VAIAGILAMKPEIIVLDEPTSGLDPMGA 173 (275)
T ss_pred HHHHHHc-CC-CHHHHHHHHHHHHHHCCCch-hhcCChhhCCHHHHHH----HHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 5442211 11 11122233444555556766 6677889999999999 99999999999988 9999999999
Q ss_pred -HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 375 -AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 375 -~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
.+..+|+.+.+.+.+++...|++.....+++.+.++..|.+++.++.+.
T Consensus 174 ~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 223 (275)
T PRK13639 174 SQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKE 223 (275)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999997656778888888888776666778888888877655443
No 154
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=6.6e-21 Score=191.20 Aligned_cols=188 Identities=12% Similarity=0.078 Sum_probs=134.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce---eeecCeEEEEeCCCc-cCCCCcccHHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT---LIISEKLVLCDCPGL-VFPSFSISRYDMVA 299 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~---~~~~~~i~l~d~pg~-~~p~~~~~~~e~v~ 299 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|....... ...+..++|+.+... .+.. .+..+++.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~--~~~~~~l~ 100 (271)
T PRK13638 23 DFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFY--TDIDSDIA 100 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhcccc--ccHHHHHH
Confidence 467899999999999999999999999986 799999987642111 122346788877532 1222 23444444
Q ss_pred hccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-
Q 010472 300 SGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR- 374 (509)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r- 374 (509)
.+..... . ........+.+.+..+++.. +....+..||+||+|| +.||+||+.+|.++ ||+|||..++
T Consensus 101 ~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qr----l~laraL~~~p~lllLDEPt~~LD~~~~~ 173 (271)
T PRK13638 101 FSLRNLG-V-PEAEITRRVDEALTLVDAQH-FRHQPIQCLSHGQKKR----VAIAGALVLQARYLLLDEPTAGLDPAGRT 173 (271)
T ss_pred HHHHHcC-C-CHHHHHHHHHHHHHHcCCHh-HhcCCchhCCHHHHHH----HHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 3211110 1 11112223344444455665 5667788999999999 99999999999998 9999999999
Q ss_pred HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 375 AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 375 ~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
.+..+|+++.+.+.+++..+|++.....+++.+.++..|++++.++.+
T Consensus 174 ~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 221 (271)
T PRK13638 174 QMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPG 221 (271)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999998754456777788888887777788888888888766543
No 155
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.83 E-value=7.8e-21 Score=202.69 Aligned_cols=213 Identities=13% Similarity=0.088 Sum_probs=165.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc------ceEEeeCCcccccce-----eeecCeEEEEeCCCcc--CCCCcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR------TGVTSTPGKTKHFQT-----LIISEKLVLCDCPGLV--FPSFSI 292 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~------~g~~~~~G~t~~~~~-----~~~~~~i~l~d~pg~~--~p~~~~ 292 (509)
++.+|+++||||.+||||||+.++|+|+++ .|.+.+.|....... ......+++++|..+- -|.+
T Consensus 31 ~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~-- 108 (539)
T COG1123 31 EVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVM-- 108 (539)
T ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchh--
Confidence 478999999999999999999999999987 478888886432211 1123568888885432 2333
Q ss_pred cHHHHHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhh-ccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCC
Q 010472 293 SRYDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCK-INLPKPKPYESQSRPPLALELLRAYCASRGYV----ASS 367 (509)
Q Consensus 293 ~~~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~-~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----Pts 367 (509)
+....+...+...... ...++...+.+.+..++|.+... ..+|+.|||||+|| +.||+||+.+|.+| ||+
T Consensus 109 tIg~Qi~E~~~~h~~~-~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQR----v~iAmALa~~P~LLIaDEPTT 183 (539)
T COG1123 109 TIGDQIREALRLHGKG-SRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQR----VMIAMALALKPKLLIADEPTT 183 (539)
T ss_pred hHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHH----HHHHHHHhCCCCEEEECCCcc
Confidence 3333333322211111 13456677778888888865333 46899999999999 99999999999998 999
Q ss_pred CCCHHHH-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhccCC
Q 010472 368 GLPDETR-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDDLS 445 (509)
Q Consensus 368 GLD~~~r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (509)
+||...+ .+.++|+++.+ .++.++..+|++.-.++.+|.+.+|+.|+++|.++++...++..+ |+-+-.+.+.+
T Consensus 184 aLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~h----pYT~~Ll~a~p 259 (539)
T COG1123 184 ALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQH----PYTRGLLAAVP 259 (539)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhccCC----cccHHHHhhCC
Confidence 9999999 99999999974 689999999999999999999999999999999999988887665 77788888877
Q ss_pred Cccc
Q 010472 446 SFDL 449 (509)
Q Consensus 446 ~~~~ 449 (509)
.++.
T Consensus 260 ~~~~ 263 (539)
T COG1123 260 RLGD 263 (539)
T ss_pred Cccc
Confidence 6654
No 156
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.2e-20 Score=189.52 Aligned_cols=189 Identities=17% Similarity=0.140 Sum_probs=128.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|..... ......++|+++...+.+.+.....+++..+.+
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~--~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~ 106 (272)
T PRK15056 29 TVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ--ALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRY 106 (272)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH--hhccceEEEeccccccccCCCcchhhheecccc
Confidence 477899999999999999999999999976 7999998865421 111235788877543322222234444433221
Q ss_pred Ccchh--hhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 304 PIDRM--TEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 304 ~~~~~--~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
..... .........+.+.+..++|.. +..+.+..||+||+|| +.||+||+.+|+++ |++|||+.++ .+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qr----v~laraL~~~p~llllDEPt~~LD~~~~~~l 181 (272)
T PRK15056 107 GHMGWLRRAKKRDRQIVTAALARVDMVE-FRHRQIGELSGGQKKR----VFLARAIAQQGQVILLDEPFTGVDVKTEARI 181 (272)
T ss_pred cccccccCCCHHHHHHHHHHHHHcCChh-HhcCCcccCCHHHHHH----HHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence 10000 000111122334444455665 5567788999999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 377 RIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 377 ~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
.++|+++.+.+..++...|++.....+++.+.++ .|++++.++.+
T Consensus 182 ~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~ 226 (272)
T PRK15056 182 ISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTE 226 (272)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHH
Confidence 9999999764456777788887765555555555 67777655443
No 157
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=6.7e-21 Score=192.01 Aligned_cols=188 Identities=14% Similarity=0.066 Sum_probs=135.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc-----eeeecCeEEEEeCCC--ccCCCCcccHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ-----TLIISEKLVLCDCPG--LVFPSFSISRYD 296 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~-----~~~~~~~i~l~d~pg--~~~p~~~~~~~e 296 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|...... ....+..++|+.+.. .+++ . +..+
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~--tv~e 105 (280)
T PRK13649 29 TIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-E--TVLK 105 (280)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc-c--cHHH
Confidence 467899999999999999999999999976 79999988754321 112345688888764 3333 3 5666
Q ss_pred HHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHH
Q 010472 297 MVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDE 372 (509)
Q Consensus 297 ~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~ 372 (509)
++..+..... . ........+.+.+..++|...+....+..||+||+|| +.||+||+.+|.++ ||+|||+.
T Consensus 106 ~l~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qr----v~la~al~~~p~lllLDEPt~~LD~~ 179 (280)
T PRK13649 106 DVAFGPQNFG-V-SQEEAEALAREKLALVGISESLFEKNPFELSGGQMRR----VAIAGILAMEPKILVLDEPTAGLDPK 179 (280)
T ss_pred HHHHHHHHcC-C-CHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHH----HHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 6654321100 1 1111222333444444564324456788999999999 99999999999998 99999999
Q ss_pred HH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 373 TR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 373 ~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
++ .+..+|+++.+.+.+++..+|++.....+++.+.++..|++++.++.+
T Consensus 180 ~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (280)
T PRK13649 180 GRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPK 230 (280)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99 999999999765567777788888887777788888888887655443
No 158
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.83 E-value=1.1e-20 Score=185.96 Aligned_cols=191 Identities=11% Similarity=0.013 Sum_probs=133.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCC--c--ceEEeeCCcccccce--eeecCeEEEEeCCCccCCCCcccHHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQK--R--TGVTSTPGKTKHFQT--LIISEKLVLCDCPGLVFPSFSISRYDMVA 299 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~--~--~g~~~~~G~t~~~~~--~~~~~~i~l~d~pg~~~p~~~~~~~e~v~ 299 (509)
++.+|++++|+|+||||||||+++|+|+. . .|.+.+.|....... ......++++.+...+++.+ +..+++.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~--t~~~~~~ 99 (243)
T TIGR01978 22 TVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGV--SNLEFLR 99 (243)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCc--CHHHHHH
Confidence 47899999999999999999999999984 2 899999987543211 11123477877776667766 3444443
Q ss_pred hccCCcch-----hhhHHHHHHHHHHhCCccchhhHhhccCCC-CCCccccCCCchHHHHHHHHHHcCCce----eCCCC
Q 010472 300 SGVLPIDR-----MTEHRQAVQVVANRVPRHVIENVCKINLPK-PKPYESQSRPPLALELLRAYCASRGYV----ASSGL 369 (509)
Q Consensus 300 ~g~~~~~~-----~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~-~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGL 369 (509)
........ ..........+.+.+..++|...+....+. .||+||+|| +.||+||+.+|+++ ||+||
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qr----l~la~al~~~p~llllDEPt~~L 175 (243)
T TIGR01978 100 SALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKR----NEILQMALLEPKLAILDEIDSGL 175 (243)
T ss_pred HHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHH----HHHHHHHhcCCCEEEecCCcccC
Confidence 22110000 001111223344455555565324445555 599999999 99999999999998 99999
Q ss_pred CHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhcc-chhhHhhcccccccCCCCc
Q 010472 370 PDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVG-MEDTQASSLLELHESDASD 422 (509)
Q Consensus 370 D~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 422 (509)
|..++ .+..+|+++.+.+.+++...|+......+ ++.+.+++.|++++.++.+
T Consensus 176 D~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (243)
T TIGR01978 176 DIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230 (243)
T ss_pred CHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHH
Confidence 99999 99999999976455677788888887775 7888888888887655544
No 159
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=6.4e-21 Score=192.56 Aligned_cols=189 Identities=14% Similarity=0.124 Sum_probs=140.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc---eeeecCeEEEEeCCCc-cCCCCcccHHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ---TLIISEKLVLCDCPGL-VFPSFSISRYDMVA 299 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~---~~~~~~~i~l~d~pg~-~~p~~~~~~~e~v~ 299 (509)
++.+|+++||+|+||+|||||+++|+|+.+ .|.+.+.|...... ....+..++|+++... .+.. .+..+++.
T Consensus 28 ~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~--~tv~e~l~ 105 (283)
T PRK13636 28 NIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFS--ASVYQDVS 105 (283)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhcc--ccHHHHHH
Confidence 467899999999999999999999999976 79999999765321 1123456888888642 2222 36677765
Q ss_pred hccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-
Q 010472 300 SGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR- 374 (509)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r- 374 (509)
.+..... . ........+.+.+..++|.. +....+..||+||+|| +.||+||+.+|.+| |++|||+.++
T Consensus 106 ~~~~~~~-~-~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LS~G~~qr----l~laraL~~~p~lLilDEPt~gLD~~~~~ 178 (283)
T PRK13636 106 FGAVNLK-L-PEDEVRKRVDNALKRTGIEH-LKDKPTHCLSFGQKKR----VAIAGVLVMEPKVLVLDEPTAGLDPMGVS 178 (283)
T ss_pred hHHHHcC-C-CHHHHHHHHHHHHHHCCChh-hhhCCcccCCHHHHHH----HHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 5422111 1 11122233444455556765 6678889999999999 99999999999988 9999999999
Q ss_pred HHHHHHHHhhcC-CccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 375 AARIILKDFIDG-KLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 375 ~~~~lLkd~~~g-kl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
.+..+|+.+.+. +.+++...|+++.....++.+.+++.|++++.++.+.
T Consensus 179 ~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 228 (283)
T PRK13636 179 EIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKE 228 (283)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999998763 5678888999999876677778888888887766544
No 160
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=9.6e-21 Score=190.71 Aligned_cols=188 Identities=12% Similarity=0.110 Sum_probs=137.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCC--ccCCCCcccHHHHHHh
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPG--LVFPSFSISRYDMVAS 300 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg--~~~p~~~~~~~e~v~~ 300 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|..... ........++++.+.. .++ .. ++.+++..
T Consensus 26 ~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~-~~--tv~~~l~~ 102 (277)
T PRK13652 26 IAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIF-SP--TVEQDIAF 102 (277)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccc-cc--cHHHHHHh
Confidence 578999999999999999999999999976 7999999875422 1112345678887753 232 23 55666654
Q ss_pred ccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-H
Q 010472 301 GVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-A 375 (509)
Q Consensus 301 g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~ 375 (509)
+.... .. ........+.+.+..++|.. +..+.+..||+||+|| +.||+||+.+|.++ ||+|||+.++ .
T Consensus 103 ~~~~~-~~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Gq~qr----l~laraL~~~p~llilDEPt~gLD~~~~~~ 175 (277)
T PRK13652 103 GPINL-GL-DEETVAHRVSSALHMLGLEE-LRDRVPHHLSGGEKKR----VAIAGVIAMEPQVLVLDEPTAGLDPQGVKE 175 (277)
T ss_pred HHHHc-CC-CHHHHHHHHHHHHHHCCChh-HhcCCcccCCHHHHHH----HHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 32211 11 11122233445555556765 5677789999999999 99999999999998 9999999999 9
Q ss_pred HHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 376 ARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 376 ~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
+.++|+.+.+ .+.+++..+|.+.....+++.+.++..|+++..++.+.
T Consensus 176 l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~ 224 (277)
T PRK13652 176 LIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEE 224 (277)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHH
Confidence 9999999875 36778888999998866667777777788877655443
No 161
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.83 E-value=8e-21 Score=185.75 Aligned_cols=186 Identities=14% Similarity=0.172 Sum_probs=136.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccccee--eecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTL--IISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~--~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
++.+|++++|+|+||||||||+++|+|+.. .|++.+.|........ .....++|+.+...+|+.+ +..+++..+
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--tv~~~l~~~ 99 (230)
T TIGR03410 22 EVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRL--TVEENLLTG 99 (230)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCC--cHHHHHHHH
Confidence 467899999999999999999999999986 7999998865422111 1234688888876677766 455555443
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
...... ........+.+.++ .+.. +....+..||+||+|| +.||+||+.+|+++ |++|||+.++ .+
T Consensus 100 ~~~~~~--~~~~~~~~~l~~~~--~l~~-~~~~~~~~LS~G~~qr----v~la~al~~~p~illlDEPt~~LD~~~~~~l 170 (230)
T TIGR03410 100 LAALPR--RSRKIPDEIYELFP--VLKE-MLGRRGGDLSGGQQQQ----LAIARALVTRPKLLLLDEPTEGIQPSIIKDI 170 (230)
T ss_pred HHhcCc--chHHHHHHHHHHHH--hHHH-HhhCChhhCCHHHHHH----HHHHHHHhcCCCEEEecCCcccCCHHHHHHH
Confidence 221111 11112223333322 1333 4566788899999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 377 RIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 377 ~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
..+|.++.+ ++.+++..+|.+.....+++.+++++.|++++.++.+
T Consensus 171 ~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~ 217 (230)
T TIGR03410 171 GRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGD 217 (230)
T ss_pred HHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999876 4677888888888888777888888888887765543
No 162
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.83 E-value=9.2e-21 Score=206.00 Aligned_cols=189 Identities=11% Similarity=0.068 Sum_probs=140.5
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce--eeecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT--LIISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~--~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
++.+|+++||+|+||||||||+++|+|+.. .|.+.+.|....... ...+..++|+.|...+++.+ ++.+++..+
T Consensus 26 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~--tv~e~l~~~ 103 (501)
T PRK10762 26 NVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQL--TIAENIFLG 103 (501)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCC--cHHHHhhhc
Confidence 467899999999999999999999999976 799999986543211 11234688888876677766 667777654
Q ss_pred cCCcc--hhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-
Q 010472 302 VLPID--RMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR- 374 (509)
Q Consensus 302 ~~~~~--~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r- 374 (509)
..... ...........+.+.+..++|.+ +..+.+..|||||+|| +.||+||+.+|.+| ||+|||+..+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qr----v~la~al~~~p~lllLDEPt~~LD~~~~~ 178 (501)
T PRK10762 104 REFVNRFGRIDWKKMYAEADKLLARLNLRF-SSDKLVGELSIGEQQM----VEIAKVLSFESKVIIMDEPTDALTDTETE 178 (501)
T ss_pred cccccccCccCHHHHHHHHHHHHHHcCCCC-CccCchhhCCHHHHHH----HHHHHHHhcCCCEEEEeCCcCCCCHHHHH
Confidence 32110 00011111223444455556655 4567788999999999 99999999999998 9999999999
Q ss_pred HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 375 AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 375 ~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
.+..+|+.+.+.+.+++..+|++.....+++.+.+++.|+++..++.
T Consensus 179 ~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~ 225 (501)
T PRK10762 179 SLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREV 225 (501)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCc
Confidence 99999999976566778888999988877778888888888765444
No 163
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.83 E-value=9.2e-21 Score=172.87 Aligned_cols=181 Identities=14% Similarity=0.082 Sum_probs=139.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce-----eeecCeEEEEeCCCccCCCCcccHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT-----LIISEKLVLCDCPGLVFPSFSISRYDMV 298 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~-----~~~~~~i~l~d~pg~~~p~~~~~~~e~v 298 (509)
.+.+|+.++|||++||||||||-.|+|+.. +|.+.+.|+..+.-. .....++++++|...+.|++ +..+|+
T Consensus 32 ~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~l--tAlENV 109 (228)
T COG4181 32 VVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNL--TALENV 109 (228)
T ss_pred EecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccc--hhhhhc
Confidence 467899999999999999999999999987 899999998765321 12246799999999999998 556666
Q ss_pred HhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 299 ASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 299 ~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
...+..... ............+..++|.. ....+|..||||++|| ++||||++.+|.+| ||++||-.+-
T Consensus 110 ~lPleL~ge--~~~~~~~~A~~lL~~vGLg~-Rl~HyP~qLSGGEQQR----VAiARAfa~~P~vLfADEPTGNLD~~Tg 182 (228)
T COG4181 110 ALPLELRGE--SSADSRAGAKALLEAVGLGK-RLTHYPAQLSGGEQQR----VALARAFAGRPDVLFADEPTGNLDRATG 182 (228)
T ss_pred cchhhhcCC--ccccHHHHHHHHHHHhCccc-ccccCccccCchHHHH----HHHHHHhcCCCCEEeccCCCCCcchhHH
Confidence 554432211 01123333445555667877 5567899999999999 99999999999999 9999999988
Q ss_pred -HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccc
Q 010472 375 -AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELH 416 (509)
Q Consensus 375 -~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~ 416 (509)
.+.++|-.++. .+++++..+|+-.-+..|++..-+ +.|+|+
T Consensus 183 ~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~-~~G~l~ 225 (228)
T COG4181 183 DKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRL-RSGRLV 225 (228)
T ss_pred HHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeee-ecceec
Confidence 89999888865 567888888888889998877654 445554
No 164
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=1e-20 Score=205.94 Aligned_cols=190 Identities=9% Similarity=0.045 Sum_probs=140.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc----ceEEeeCCccccccee--eecCeEEEEeCCCccCCCCcccHHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR----TGVTSTPGKTKHFQTL--IISEKLVLCDCPGLVFPSFSISRYDMVA 299 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~----~g~~~~~G~t~~~~~~--~~~~~i~l~d~pg~~~p~~~~~~~e~v~ 299 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|........ ..+..++|+.|...+++.+ ++.+++.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~--tv~e~l~ 104 (506)
T PRK13549 27 KVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKEL--SVLENIF 104 (506)
T ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCC--cHHHHhh
Confidence 467899999999999999999999999876 6889898875432111 1235688888876677766 5667766
Q ss_pred hccCCcc-hhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 300 SGVLPID-RMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 300 ~g~~~~~-~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
.+..... ...........+.+.+..+++.. +....+..|||||+|| ++||+||+.+|.+| ||+|||+..+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqr----v~la~al~~~p~lllLDEPt~~LD~~~~ 179 (506)
T PRK13549 105 LGNEITPGGIMDYDAMYLRAQKLLAQLKLDI-NPATPVGNLGLGQQQL----VEIAKALNKQARLLILDEPTASLTESET 179 (506)
T ss_pred hcccccccCCcCHHHHHHHHHHHHHHcCCCC-CcccchhhCCHHHHHH----HHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 5432110 00011122233444555556655 5567788999999999 99999999999998 9999999999
Q ss_pred -HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 375 -AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 375 -~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
.+..+|+++.+.+.+++..+|++.....+++.+.+++.|+++..++.+
T Consensus 180 ~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 228 (506)
T PRK13549 180 AVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAA 228 (506)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccc
Confidence 999999999765567788889999888777788888888887665543
No 165
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.4e-20 Score=186.03 Aligned_cols=190 Identities=17% Similarity=0.163 Sum_probs=135.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCcccccc---eeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHFQ---TLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~~---~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|...... ...++..++|+.+...+|+ . +..
T Consensus 35 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~--tv~ 111 (260)
T PRK10744 35 DIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-M--SIY 111 (260)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc-C--cHH
Confidence 477999999999999999999999999963 69999998764311 1123456888888665655 4 566
Q ss_pred HHHHhccCCcchh--hhHHHHHHHHHHhCCcc-chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCC
Q 010472 296 DMVASGVLPIDRM--TEHRQAVQVVANRVPRH-VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSG 368 (509)
Q Consensus 296 e~v~~g~~~~~~~--~~~~~~~~~i~~~l~~~-~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsG 368 (509)
+++..+....... ......+..+.+.+... .+.. +....+..||+||+|| +.||+||+.+|+++ |++|
T Consensus 112 ~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~Gq~qr----v~laral~~~p~lllLDEPt~~ 186 (260)
T PRK10744 112 DNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKD-KLHQSGYSLSGGQQQR----LCIARGIAIRPEVLLLDEPCSA 186 (260)
T ss_pred HHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH-HHhcCCCCCCHHHHHH----HHHHHHHHCCCCEEEEcCCCcc
Confidence 6665432110001 01112223333333321 1223 4456678999999999 99999999999998 9999
Q ss_pred CCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 369 LPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 369 LD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
||..++ .+..+|+++.++ .+++..+|++.....+++.+.+++.|++++.++.+..
T Consensus 187 LD~~~~~~l~~~L~~~~~~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (260)
T PRK10744 187 LDPISTGRIEELITELKQD-YTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTI 242 (260)
T ss_pred CCHHHHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999 999999999765 5678888888887777778888888998876655443
No 166
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=1.2e-20 Score=189.19 Aligned_cols=187 Identities=11% Similarity=0.059 Sum_probs=134.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCC-ccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPG-LVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg-~~~p~~~~~~~e~v~~g 301 (509)
.+.+|++++|+|+||+|||||+++|+|+.+ .|.+.+.|..... .....+..++|+.+.. ..++.. +..+++..+
T Consensus 31 ~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~--~v~~~~~~~ 108 (269)
T PRK13648 31 NIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS--IVKYDVAFG 108 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccc--cHHHHHHhh
Confidence 467999999999999999999999999976 8999999976432 1112345688887764 345544 444555443
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
..... . ........+.+.+..+++.. +....+..||+||+|| +.||+|++.+|.++ |++|||+.++ .+
T Consensus 109 ~~~~~-~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----l~laral~~~p~lllLDEPt~~LD~~~~~~l 181 (269)
T PRK13648 109 LENHA-V-PYDEMHRRVSEALKQVDMLE-RADYEPNALSGGQKQR----VAIAGVLALNPSVIILDEATSMLDPDARQNL 181 (269)
T ss_pred HHhcC-C-CHHHHHHHHHHHHHHcCCch-hhhCCcccCCHHHHHH----HHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 21110 0 11111223334444455655 5567788999999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 377 RIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 377 ~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
..+|+++.+ .+.+++..+|....... ++.+++++.|++++.++.+
T Consensus 182 ~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 227 (269)
T PRK13648 182 LDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPT 227 (269)
T ss_pred HHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEecCHH
Confidence 999999865 35667777788777775 6788888889988765543
No 167
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.7e-20 Score=184.42 Aligned_cols=189 Identities=15% Similarity=0.090 Sum_probs=135.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCccccc---ceeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHF---QTLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~---~~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|..... .....+..++|+.+...+|+ . +..
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~--t~~ 101 (250)
T PRK14240 25 DIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-M--SIY 101 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc-c--cHH
Confidence 477999999999999999999999999753 6999999976432 11123456888888666655 4 556
Q ss_pred HHHHhccCCcch--hhhHHHHHHHHHHhCCcc-chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCC
Q 010472 296 DMVASGVLPIDR--MTEHRQAVQVVANRVPRH-VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSG 368 (509)
Q Consensus 296 e~v~~g~~~~~~--~~~~~~~~~~i~~~l~~~-~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsG 368 (509)
+++..+...... .......+..+.+.+... .+.. +....+..||+||+|| ++||+||+.+|+++ |++|
T Consensus 102 ~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G~~qr----v~laral~~~p~llllDEP~~~ 176 (250)
T PRK14240 102 DNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD-RLKKSALGLSGGQQQR----LCIARALAVEPEVLLMDEPTSA 176 (250)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHH-HHhcCCCCCCHHHHHH----HHHHHHHhcCCCEEEEeCCCcc
Confidence 666543211100 001112223333333321 1223 4456688999999999 99999999999998 9999
Q ss_pred CCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 369 LPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 369 LD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
||..++ .+..+|+++..+ .+++..+|++.....+++.+.+++.|++++.++.+.
T Consensus 177 LD~~~~~~l~~~l~~~~~~-~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 177 LDPISTLKIEELIQELKKD-YTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred CCHHHHHHHHHHHHHHhcC-CeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 999999 999999999765 577888888888777777888888888887665543
No 168
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.83 E-value=1.2e-20 Score=184.63 Aligned_cols=190 Identities=11% Similarity=0.063 Sum_probs=134.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc------ceEEeeCCcccccceeeecCeEEEEeCCCc--cCCCCcccHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR------TGVTSTPGKTKHFQTLIISEKLVLCDCPGL--VFPSFSISRYDM 297 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~------~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~--~~p~~~~~~~e~ 297 (509)
++.+|++++|+|+||+|||||+++|+|+.+ .|.+.+.|...... ......++|+.+... +++.+ +..++
T Consensus 8 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~-~~~~~~i~~~~q~~~~~~~~~~--t~~~~ 84 (230)
T TIGR02770 8 SLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL-SIRGRHIATIMQNPRTAFNPLF--TMGNH 84 (230)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh-hhhhheeEEEecCchhhcCccc--CHHHH
Confidence 467899999999999999999999999975 68888888654321 111246788877652 33444 33444
Q ss_pred HHhccCCcchhhhHHHHHHHHHHhCCccchhh--HhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCH
Q 010472 298 VASGVLPIDRMTEHRQAVQVVANRVPRHVIEN--VCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPD 371 (509)
Q Consensus 298 v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~--~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~ 371 (509)
+...+...... . ......+.+.+..+++.. .+....+..||+||+|| ++||+|++.+|.++ ||+|||.
T Consensus 85 ~~~~~~~~~~~-~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qr----v~laral~~~p~vllLDEPt~~LD~ 158 (230)
T TIGR02770 85 AIETLRSLGKL-S-KQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQR----VMIALALLLEPPFLIADEPTTDLDV 158 (230)
T ss_pred HHHHHHHcCcc-H-HHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHH----HHHHHHHhcCCCEEEEcCCccccCH
Confidence 33221100000 1 111223344444445541 25566788999999999 99999999999998 9999999
Q ss_pred HHH-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 372 ETR-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 372 ~~r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
.++ .+..+|+++.+ .+.+++...|.+.....+++.+.++..|+++..++.+..
T Consensus 159 ~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 213 (230)
T TIGR02770 159 VNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEI 213 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999 99999999875 466788888888888777778888888888876554433
No 169
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.7e-20 Score=184.64 Aligned_cols=189 Identities=14% Similarity=0.081 Sum_probs=134.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCC-------cceEEeeCCcccccc---eeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQK-------RTGVTSTPGKTKHFQ---TLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~-------~~g~~~~~G~t~~~~---~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
++.+|++++|+|+||||||||+++|+|+. ..|.+.+.|...... ....+..++|+.+...+|+ . +..
T Consensus 28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~--tv~ 104 (253)
T PRK14242 28 EFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-K--SIF 104 (253)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc-C--cHH
Confidence 46789999999999999999999999984 269999998754321 1123456888888766665 3 566
Q ss_pred HHHHhccCCcc--hhhhHHHHHHHHHHhCCccc-hhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCC
Q 010472 296 DMVASGVLPID--RMTEHRQAVQVVANRVPRHV-IENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSG 368 (509)
Q Consensus 296 e~v~~g~~~~~--~~~~~~~~~~~i~~~l~~~~-L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsG 368 (509)
+++..+..... ........+..+.+.++... +.. +....+..||+||+|| +.||+||+.+|.++ ||+|
T Consensus 105 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LSgGq~qr----v~laral~~~p~llllDEPt~~ 179 (253)
T PRK14242 105 ENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-RLHESALGLSGGQQQR----LCIARALAVEPEVLLMDEPASA 179 (253)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-HhhCCcccCCHHHHHH----HHHHHHHhcCCCEEEEeCCccc
Confidence 66655431110 00011122233333333211 122 3456678999999999 99999999999998 9999
Q ss_pred CCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 369 LPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 369 LD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
||..++ .+..+|+++.++ .+++..+|++.....+++.+.+++.|++++.++.+.
T Consensus 180 LD~~~~~~l~~~l~~~~~~-~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14242 180 LDPIATQKIEELIHELKAR-YTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQ 234 (253)
T ss_pred CCHHHHHHHHHHHHHHhcC-CeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999 999999999765 677888888888877777888888888877655443
No 170
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.83 E-value=1.2e-20 Score=183.86 Aligned_cols=180 Identities=14% Similarity=0.101 Sum_probs=133.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||+|||||+++|+|+.. .|.+.+.|...... . ...++++.+...+++.+ +..+++.....
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~--~-~~~~~~~~q~~~~~~~~--t~~~~~~~~~~ 96 (223)
T TIGR03740 22 TVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK--D-LHKIGSLIESPPLYENL--TARENLKVHTT 96 (223)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc--c-cccEEEEcCCCCccccC--CHHHHHHHHHH
Confidence 467899999999999999999999999976 79899888654221 1 13577887766666665 45555543221
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
.. .. . ... +.+.+..+++.. +....+..||+||+|| +.||+|++.+|.++ |++|||..++ .+..
T Consensus 97 ~~-~~-~-~~~---~~~~l~~~~l~~-~~~~~~~~LS~G~~~r----v~laral~~~p~llllDEP~~~LD~~~~~~l~~ 165 (223)
T TIGR03740 97 LL-GL-P-DSR---IDEVLNIVDLTN-TGKKKAKQFSLGMKQR----LGIAIALLNHPKLLILDEPTNGLDPIGIQELRE 165 (223)
T ss_pred Hc-CC-C-HHH---HHHHHHHcCCcH-HHhhhHhhCCHHHHHH----HHHHHHHhcCCCEEEECCCccCCCHHHHHHHHH
Confidence 00 00 1 112 333344445655 5566778899999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 379 ILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 379 lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
+|+++.+.+..++..+|+......+++.+..+..|+++..++.
T Consensus 166 ~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~ 208 (223)
T TIGR03740 166 LIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKI 208 (223)
T ss_pred HHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecCh
Confidence 9999976556788888888887766677777788888776554
No 171
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.7e-20 Score=183.98 Aligned_cols=187 Identities=12% Similarity=0.110 Sum_probs=136.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||+|||||+++|+|..+ .|.+.+.|....... .....++++.+...+|+.+ +..+++..+..
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~~i~~~~q~~~~~~~~--t~~~nl~~~~~ 98 (232)
T cd03300 22 DIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLP-PHKRPVNTVFQNYALFPHL--TVFENIAFGLR 98 (232)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC-hhhcceEEEecccccCCCC--cHHHHHHHHHH
Confidence 467899999999999999999999999987 788999886543211 1235688888877777665 44555543321
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
... . ........+...+..+++.. +....+..||+||+|| +.||+||+.+|+++ |++|||..++ .+..
T Consensus 99 ~~~-~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~lS~G~~qr----l~laral~~~p~llllDEP~~gLD~~~~~~l~~ 171 (232)
T cd03300 99 LKK-L-PKAEIKERVAEALDLVQLEG-YANRKPSQLSGGQQQR----VAIARALVNEPKVLLLDEPLGALDLKLRKDMQL 171 (232)
T ss_pred hcC-C-CHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHH----HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 110 0 11111223333444445655 5567788999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 379 ILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 379 lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
+|+++.+ ...+++...|.......+++.+.+++.|++++.++.+
T Consensus 172 ~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~ 216 (232)
T cd03300 172 ELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPE 216 (232)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHH
Confidence 9999875 3566777777777766666777777888887765543
No 172
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.82 E-value=1.3e-20 Score=206.28 Aligned_cols=193 Identities=15% Similarity=0.128 Sum_probs=141.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCcccccce----eeecCeEEEEeCCC--ccCCCCcccHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHFQT----LIISEKLVLCDCPG--LVFPSFSISRYDMV 298 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~~~----~~~~~~i~l~d~pg--~~~p~~~~~~~e~v 298 (509)
++.+|+++||+|+||||||||+++|+|+.+ .|.+.+.|....... ...+..++|++|.. .+++.+ ++.+++
T Consensus 308 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~--tv~e~l 385 (529)
T PRK15134 308 TLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRL--NVLQII 385 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcc--cHHHHH
Confidence 578999999999999999999999999986 899999886542111 01234688888864 356665 566666
Q ss_pred HhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 299 ASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 299 ~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
..+................+.+.+..++|...+....+..|||||+|| +.||+||+.+|.+| ||+|||+.++
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qr----v~la~al~~~p~llllDEPt~~LD~~~~ 461 (529)
T PRK15134 386 EEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQR----IAIARALILKPSLIILDEPTSSLDKTVQ 461 (529)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHH----HHHHHHHhCCCCEEEeeCCccccCHHHH
Confidence 554211000001111223344455555665224567789999999999 99999999999998 9999999999
Q ss_pred -HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 375 -AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 375 -~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
.+..+|+++.+ .+.+++..+|++.....+++.+.+++.|++++.++.+..
T Consensus 462 ~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 513 (529)
T PRK15134 462 AQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERV 513 (529)
T ss_pred HHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHH
Confidence 99999999975 356788888999988887788888888898876655443
No 173
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2.5e-20 Score=186.90 Aligned_cols=191 Identities=13% Similarity=0.070 Sum_probs=134.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCccccc---ceeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHF---QTLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~---~~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|..... .....+..++|+.+...+|+ . ++.
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~--tv~ 111 (269)
T PRK14259 35 DIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFP-K--SIY 111 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccch-h--hHH
Confidence 578999999999999999999999999853 6889998875421 11123456888888766665 3 566
Q ss_pred HHHHhccCCcchhhhHHHHHHHHHHhCCcc-chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 296 DMVASGVLPIDRMTEHRQAVQVVANRVPRH-VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 296 e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~-~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
+++..+...........+.+..+.+.+... .+.. +....+..||+||+|| ++||+||+.+|+++ |++|||
T Consensus 112 enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G~~qr----l~laral~~~p~lllLDEPt~gLD 186 (269)
T PRK14259 112 ENIAFGARINGYTGDMDELVERSLRKAAVWDECKD-KLNESGYSLSGGQQQR----LCIARTIAIEPEVILMDEPCSALD 186 (269)
T ss_pred HHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhh-hhCCCcccCCHHHHHH----HHHHHHHhcCCCEEEEcCCCccCC
Confidence 666544321100011112223333433321 2233 4556678899999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcc-----------cccccCCCCcccc
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSL-----------LELHESDASDAEE 425 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ 425 (509)
+.++ .+..+|+++.++ ..++..+|++.....+++.+.+++. |++++.++.+...
T Consensus 187 ~~~~~~l~~~l~~~~~~-~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 187 PISTLKIEETMHELKKN-FTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred HHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeCCHHHHH
Confidence 9999 999999999765 5678888888888777777777764 4567666554443
No 174
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.82 E-value=1.7e-20 Score=186.82 Aligned_cols=192 Identities=14% Similarity=0.097 Sum_probs=135.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcc-----ccc-ceee----ecCeEEEEeCCCc--cCCCCc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKT-----KHF-QTLI----ISEKLVLCDCPGL--VFPSFS 291 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t-----~~~-~~~~----~~~~i~l~d~pg~--~~p~~~ 291 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|.. ... .... ....++|+.+... +++.+
T Consensus 28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~- 106 (258)
T PRK11701 28 DLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQV- 106 (258)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccc-
Confidence 478999999999999999999999999976 7999998864 221 1101 1345788877542 34444
Q ss_pred ccHHHHHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCC
Q 010472 292 ISRYDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASS 367 (509)
Q Consensus 292 ~~~~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----Pts 367 (509)
+..+++...+..... .........+.+.+..+++...+....+..||+||+|| ++||+||+.+|+++ |++
T Consensus 107 -~~~~~i~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qr----l~laral~~~p~llllDEPt~ 180 (258)
T PRK11701 107 -SAGGNIGERLMAVGA-RHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQR----LQIARNLVTHPRLVFMDEPTG 180 (258)
T ss_pred -cHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHH----HHHHHHHhcCCCEEEEcCCcc
Confidence 344444332111000 01111122333444444554224457788999999999 99999999999998 999
Q ss_pred CCCHHHH-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 368 GLPDETR-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 368 GLD~~~r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
|||+.++ .+..+|+.+.. .+.+++..+|++.....+++.+.+++.|++++.++.+..
T Consensus 181 ~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 239 (258)
T PRK11701 181 GLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQV 239 (258)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999 99999999865 367888899999999877778888888999876655433
No 175
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.2e-20 Score=189.93 Aligned_cols=189 Identities=14% Similarity=0.115 Sum_probs=138.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce-eeecCeEEEEeCCC-ccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT-LIISEKLVLCDCPG-LVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~-~~~~~~i~l~d~pg-~~~p~~~~~~~e~v~~g 301 (509)
++.+|++++|+|+||+|||||+++|+|+.+ .|.+.+.|....... ......++|+.+.. ..++.. +..+++..+
T Consensus 29 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~--tv~eni~~~ 106 (277)
T PRK13642 29 SITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGA--TVEDDVAFG 106 (277)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccC--CHHHHHHhh
Confidence 467899999999999999999999999987 799999986543211 12345688888764 234444 566676544
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
..... . ........+...+..++|.. +....+..||+||+|| +.||+||+.+|.++ |++|||+.++ .+
T Consensus 107 ~~~~~-~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----v~lAraL~~~p~llllDEPt~~LD~~~~~~l 179 (277)
T PRK13642 107 MENQG-I-PREEMIKRVDEALLAVNMLD-FKTREPARLSGGQKQR----VAVAGIIALRPEIIILDESTSMLDPTGRQEI 179 (277)
T ss_pred HHHcC-C-CHHHHHHHHHHHHHHCCCHh-HhhCCcccCCHHHHHH----HHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 32111 1 11112223344444456665 5667788999999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhcC-CccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 377 RIILKDFIDG-KLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 377 ~~lLkd~~~g-kl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
..+|+.+.+. +.+++..+|++..... ++.+++++.|++++.++.+..
T Consensus 180 ~~~l~~l~~~~g~tiil~sH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~ 227 (277)
T PRK13642 180 MRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSEL 227 (277)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEeCCHHHH
Confidence 9999999763 6677778888888875 677788888888876655443
No 176
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.5e-20 Score=189.58 Aligned_cols=187 Identities=10% Similarity=0.020 Sum_probs=136.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc--eeeecCeEEEEeCCCc--cCCCCcccHHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ--TLIISEKLVLCDCPGL--VFPSFSISRYDMVA 299 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~--~~~~~~~i~l~d~pg~--~~p~~~~~~~e~v~ 299 (509)
++.+|++++|+|+||+|||||+++|+|+.. .|.+.+.|...... .......++|+.+... +++ .+..+++.
T Consensus 32 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~---~~v~~~l~ 108 (280)
T PRK13633 32 EVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVA---TIVEEDVA 108 (280)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhcc---ccHHHHHH
Confidence 477899999999999999999999999987 79999998764321 1123456788877542 222 24556665
Q ss_pred hccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-
Q 010472 300 SGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR- 374 (509)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r- 374 (509)
.+.... .. ........+.+.+..++|.. +..+.+..||+||+|| +.||+||+.+|+++ |++|||+.++
T Consensus 109 ~~~~~~-~~-~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LS~G~~qr----v~laral~~~p~llllDEPt~gLD~~~~~ 181 (280)
T PRK13633 109 FGPENL-GI-PPEEIRERVDESLKKVGMYE-YRRHAPHLLSGGQKQR----VAIAGILAMRPECIIFDEPTAMLDPSGRR 181 (280)
T ss_pred hhHhhc-CC-CHHHHHHHHHHHHHHCCCHh-HhhCCcccCCHHHHHH----HHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 442211 11 11122233444555556766 6677899999999999 99999999999988 9999999999
Q ss_pred HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 375 AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 375 ~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
.+..+|+++.+ .+.+++..+|++...+. ++.+.++..|+++..++.+.
T Consensus 182 ~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~ 230 (280)
T PRK13633 182 EVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKE 230 (280)
T ss_pred HHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEecCHHH
Confidence 99999999965 35667777888888876 66777778888877655443
No 177
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.82 E-value=1.8e-20 Score=187.74 Aligned_cols=190 Identities=13% Similarity=0.079 Sum_probs=134.5
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccccee-eecCeEEEEeCCCc--cCCCCcccHHHHHHh
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTL-IISEKLVLCDCPGL--VFPSFSISRYDMVAS 300 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~-~~~~~i~l~d~pg~--~~p~~~~~~~e~v~~ 300 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|........ .....++|+.+... +++.+ +..+++..
T Consensus 35 ~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~--tv~~~l~~ 112 (267)
T PRK15112 35 TLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQ--RISQILDF 112 (267)
T ss_pred EecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcch--hHHHHHHH
Confidence 477999999999999999999999999986 7999999876532111 12345788877542 34444 33444332
Q ss_pred ccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-H
Q 010472 301 GVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-A 375 (509)
Q Consensus 301 g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~ 375 (509)
........ ......+.+.+.+..++|...+....+..||+||+|| ++||+||+.+|.+| |++|||+.++ .
T Consensus 113 ~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qr----v~laral~~~p~lllLDEPt~~LD~~~~~~ 187 (267)
T PRK15112 113 PLRLNTDL-EPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQR----LGLARALILRPKVIIADEALASLDMSMRSQ 187 (267)
T ss_pred HHHhccCC-CHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHH----HHHHHHHHhCCCEEEEcCCcccCCHHHHHH
Confidence 21100000 1111222344445555563224556678999999999 99999999999998 9999999999 9
Q ss_pred HHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 376 ARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 376 ~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
+.++|+++.+ .+.+++...|++.....+++.+.++..|++++.++.+
T Consensus 188 l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 235 (267)
T PRK15112 188 LINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTA 235 (267)
T ss_pred HHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHH
Confidence 9999999865 3567777888888888777788888888887655443
No 178
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.9e-20 Score=184.05 Aligned_cols=187 Identities=14% Similarity=0.123 Sum_probs=137.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||+|||||+++|+|+.+ .|.+.+.|........ ....++++++...+|+.+ +..+++..+..
T Consensus 21 ~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~-~~~~i~~~~q~~~~~~~~--t~~e~l~~~~~ 97 (235)
T cd03299 21 EVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP-EKRDISYVPQNYALFPHM--TVYKNIAYGLK 97 (235)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh-hHcCEEEEeecCccCCCc--cHHHHHHHHHH
Confidence 467899999999999999999999999977 7899999865432111 235688888877777766 44555554321
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
... . ........+.+.+..++|.. +..+.+..||+||+|| ++||+|++.+|.++ |++|||..++ .++.
T Consensus 98 ~~~-~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----l~laral~~~p~llllDEPt~gLD~~~~~~l~~ 170 (235)
T cd03299 98 KRK-V-DKKEIERKVLEIAEMLGIDH-LLNRKPETLSGGEQQR----VAIARALVVNPKILLLDEPFSALDVRTKEKLRE 170 (235)
T ss_pred HcC-C-CHHHHHHHHHHHHHHcCChh-HHhcCcccCCHHHHHH----HHHHHHHHcCCCEEEECCCcccCCHHHHHHHHH
Confidence 110 0 11122233444555556765 5567788999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhcC-CccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 379 ILKDFIDG-KLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 379 lLkd~~~g-kl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
+|+++... ..+++...|.+......++.++.++.|++++.++.+
T Consensus 171 ~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 215 (235)
T cd03299 171 ELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPE 215 (235)
T ss_pred HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 99998653 567778888888766555667777778887765543
No 179
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.82 E-value=1.7e-20 Score=180.08 Aligned_cols=170 Identities=13% Similarity=0.056 Sum_probs=122.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ce----eeecCeEEEEeCCCccCCCCcccHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QT----LIISEKLVLCDCPGLVFPSFSISRYDMV 298 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~----~~~~~~i~l~d~pg~~~p~~~~~~~e~v 298 (509)
.+.+|++++|+|+||+|||||+++|+|+.. .|.+.+.|..... .. ......++++.+...+|+.. +..+++
T Consensus 20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--t~~e~~ 97 (206)
T TIGR03608 20 TIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENE--TVEENL 97 (206)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCC--cHHHHH
Confidence 467899999999999999999999999986 7999998875321 10 11245688888877777766 455555
Q ss_pred HhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 299 ASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 299 ~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
..+.... .. ........+.+.+..+++.. +..+.+..||+||+|| +.||+||+.+|.++ |++|||+.++
T Consensus 98 ~~~~~~~-~~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~lS~G~~qr----~~laral~~~p~llllDEPt~~LD~~~~ 170 (206)
T TIGR03608 98 DLGLKYK-KL-SKKEKREKKKEALEKVGLNL-KLKQKIYELSGGEQQR----VALARAILKDPPLILADEPTGSLDPKNR 170 (206)
T ss_pred HHHHHhc-CC-CHHHHHHHHHHHHHHcCchh-hhcCChhhCCHHHHHH----HHHHHHHHcCCCEEEEeCCcCCCCHHHH
Confidence 4432110 00 11122233445555556665 5667788999999999 99999999999998 9999999999
Q ss_pred -HHHHHHHHhhcCCccEEEcCCCCChhhccc
Q 010472 375 -AARIILKDFIDGKLPHFEMPPGMSHEEVGM 404 (509)
Q Consensus 375 -~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~ 404 (509)
.+..+|+++.+.+..++...|.+...+.|+
T Consensus 171 ~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d 201 (206)
T TIGR03608 171 DEVLDLLLELNDEGKTIIIVTHDPEVAKQAD 201 (206)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHhhcC
Confidence 999999998754455555666665555544
No 180
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=9.9e-21 Score=189.58 Aligned_cols=192 Identities=16% Similarity=0.126 Sum_probs=136.4
Q ss_pred ccCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCccccc---ceeeecCeEEEEeCCCccCCCCcccH
Q 010472 225 NVAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHF---QTLIISEKLVLCDCPGLVFPSFSISR 294 (509)
Q Consensus 225 ~~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~---~~~~~~~~i~l~d~pg~~~p~~~~~~ 294 (509)
-++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|..... .....+..++|+.+...+|+. ++
T Consensus 40 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~---tv 116 (267)
T PRK14235 40 LDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK---SI 116 (267)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCC---cH
Confidence 3578999999999999999999999999863 6999999976432 111234568888886555552 56
Q ss_pred HHHHHhccCCcchhhhHHHHHHHHHHhCCccchhh---HhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCC
Q 010472 295 YDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIEN---VCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASS 367 (509)
Q Consensus 295 ~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~---~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----Pts 367 (509)
.+++..+................+.+.+..+++.. ......+..||+||+|| ++||+||+.+|.++ |++
T Consensus 117 ~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr----v~laral~~~p~lllLDEPt~ 192 (267)
T PRK14235 117 YENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQR----LCIARAIAVSPEVILMDEPCS 192 (267)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHH----HHHHHHHHcCCCEEEEeCCCc
Confidence 66665442110000001111122333333334422 12345678899999999 99999999999998 999
Q ss_pred CCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 368 GLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 368 GLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
|||+.++ .+..+|+.+.++ .+++..+|++.....+++.+.+++.|++++.++.+..
T Consensus 193 ~LD~~~~~~l~~~L~~l~~~-~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14235 193 ALDPIATAKVEELIDELRQN-YTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKM 249 (267)
T ss_pred CCCHHHHHHHHHHHHHHhcC-CeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999 999999999775 5778888888888777778888888888876655443
No 181
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=3.3e-20 Score=183.92 Aligned_cols=191 Identities=16% Similarity=0.104 Sum_probs=137.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCcccccce---eeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHFQT---LIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~~~---~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
++.+|++++|+|+||+|||||+++|+|+.. .|.+.+.|....... ...+..++|+.+...+|+ . +..
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~--tv~ 102 (251)
T PRK14270 26 PIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-M--SIY 102 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC-C--cHH
Confidence 467899999999999999999999999853 599999987643211 123456889988777665 4 556
Q ss_pred HHHHhccCCcc--hhhhHHHHHHHHHHhCCcc-chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCC
Q 010472 296 DMVASGVLPID--RMTEHRQAVQVVANRVPRH-VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSG 368 (509)
Q Consensus 296 e~v~~g~~~~~--~~~~~~~~~~~i~~~l~~~-~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsG 368 (509)
+++..+..... ........+..+.+.+... .+.. +....+..||+||+|| ++||+|++.+|+++ |++|
T Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~G~~qr----v~laral~~~p~llllDEP~~~ 177 (251)
T PRK14270 103 DNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-DLKKSALKLSGGQQQR----LCIARTIAVKPDVILMDEPTSA 177 (251)
T ss_pred HHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-HhhCCcccCCHHHHHH----HHHHHHHhcCCCEEEEeCCccc
Confidence 66654321110 0001112223333443321 1223 4456688999999999 99999999999998 9999
Q ss_pred CCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcccc
Q 010472 369 LPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEE 425 (509)
Q Consensus 369 LD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (509)
||+.++ .+..+|+.+.++ .+++..+|++.....+++.+.++..|++++.++.+...
T Consensus 178 LD~~~~~~l~~~L~~~~~~-~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 178 LDPISTLKIEDLMVELKKE-YTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred CCHHHHHHHHHHHHHHHhC-CeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 999999 999999999876 56777778888877777888888888988776665443
No 182
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.6e-20 Score=188.55 Aligned_cols=186 Identities=15% Similarity=0.123 Sum_probs=135.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc-eeeecCeEEEEeCCC-ccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ-TLIISEKLVLCDCPG-LVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~-~~~~~~~i~l~d~pg-~~~p~~~~~~~e~v~~g 301 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|...... ...++..++|+.+.. ..++.. +..+++..+
T Consensus 31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~--tv~enl~~~ 108 (271)
T PRK13632 31 EINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGA--TVEDDIAFG 108 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcc--cHHHHHHhH
Confidence 467899999999999999999999999976 79999998764321 112345688888764 345544 566666554
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
.... .. ........+.+.+..++|.. +....+..||+||+|| +.||+||+.+|.++ |++|||+.++ .+
T Consensus 109 ~~~~-~~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----l~laral~~~p~lllLDEP~~gLD~~~~~~l 181 (271)
T PRK13632 109 LENK-KV-PPKKMKDIIDDLAKKVGMED-YLDKEPQNLSGGQKQR----VAIASVLALNPEIIIFDESTSMLDPKGKREI 181 (271)
T ss_pred HHHc-CC-CHHHHHHHHHHHHHHcCCHH-HhhCCcccCCHHHHHH----HHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 3211 11 11122233444555556765 5667789999999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 377 RIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 377 ~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
..+|+++.. +..+++...|.+..... ++.+.++..|+++..++.
T Consensus 182 ~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~v~~l~~G~i~~~g~~ 226 (271)
T PRK13632 182 KKIMVDLRKTRKKTLISITHDMDEAIL-ADKVIVFSEGKLIAQGKP 226 (271)
T ss_pred HHHHHHHHHhcCcEEEEEEechhHHhh-CCEEEEEECCEEEEecCH
Confidence 999999865 44666677777777764 667777888888765543
No 183
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.6e-20 Score=203.60 Aligned_cols=189 Identities=13% Similarity=0.086 Sum_probs=140.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce--eeecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT--LIISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~--~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|....... ...+..++|+.|...+++.+ ++.+++..+
T Consensus 20 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~--tv~~~l~~~ 97 (491)
T PRK10982 20 KVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR--SVMDNMWLG 97 (491)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC--CHHHHhhcc
Confidence 467899999999999999999999999976 799999987543211 11234688888876666666 566777655
Q ss_pred cCCcchh-hhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-H
Q 010472 302 VLPIDRM-TEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-A 375 (509)
Q Consensus 302 ~~~~~~~-~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~ 375 (509)
....... .......+.+.+.+..+++.. +....+..|||||+|| ++||+||+.+|.+| ||+|||+..+ .
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qr----v~lA~al~~~p~lllLDEPt~~LD~~~~~~ 172 (491)
T PRK10982 98 RYPTKGMFVDQDKMYRDTKAIFDELDIDI-DPRAKVATLSVSQMQM----IEIAKAFSYNAKIVIMDEPTSSLTEKEVNH 172 (491)
T ss_pred cccccccccCHHHHHHHHHHHHHHcCCCC-CccCchhhCCHHHHHH----HHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Confidence 4321110 011122233444444455654 4456688999999999 99999999999998 9999999999 9
Q ss_pred HHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 376 ARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 376 ~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
+.++|+++.+.+..++..+|++.....+++.+.+++.|+++..++.
T Consensus 173 l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 218 (491)
T PRK10982 173 LFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPL 218 (491)
T ss_pred HHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecCh
Confidence 9999999876556677778998888877788888888988775544
No 184
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.3e-20 Score=190.18 Aligned_cols=188 Identities=13% Similarity=0.104 Sum_probs=138.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--c---eEEeeCCcccccce-eeecCeEEEEeCCC-ccCCCCcccHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--T---GVTSTPGKTKHFQT-LIISEKLVLCDCPG-LVFPSFSISRYDMV 298 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~---g~~~~~G~t~~~~~-~~~~~~i~l~d~pg-~~~p~~~~~~~e~v 298 (509)
++.+|+++||+|+||||||||+++|+|+.. . |.+.+.|....... ......++|+++.. ..++.+ ++.+++
T Consensus 29 ~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~--tv~enl 106 (282)
T PRK13640 29 SIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGA--TVGDDV 106 (282)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccC--CHHHHH
Confidence 578899999999999999999999999986 3 89999987653211 12345688888764 344444 566776
Q ss_pred HhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 299 ASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 299 ~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
..+.... .. ......+.+.+.+..++|.. +....+..||+||+|| +.||+||+.+|.++ |++|||..++
T Consensus 107 ~~~~~~~-~~-~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LS~G~~qr----v~laral~~~P~llllDEPt~gLD~~~~ 179 (282)
T PRK13640 107 AFGLENR-AV-PRPEMIKIVRDVLADVGMLD-YIDSEPANLSGGQKQR----VAIAGILAVEPKIIILDESTSMLDPAGK 179 (282)
T ss_pred HhhHHhC-CC-CHHHHHHHHHHHHHHCCChh-HhcCCcccCCHHHHHH----HHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 5442111 11 11122233444555566766 6677889999999999 99999999999998 9999999999
Q ss_pred -HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 375 -AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 375 -~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
.+..+|+.+.. .+.+++..+|++...+. ++.+.++..|++++.++.+.
T Consensus 180 ~~l~~~l~~l~~~~g~tvli~tH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 229 (282)
T PRK13640 180 EQILKLIRKLKKKNNLTVISITHDIDEANM-ADQVLVLDDGKLLAQGSPVE 229 (282)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEECCEEEEeCCHHH
Confidence 99999999865 35667777788888875 56777778888887666543
No 185
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.5e-20 Score=204.78 Aligned_cols=190 Identities=10% Similarity=-0.001 Sum_probs=141.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccccee--eecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTL--IISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~--~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
++.+|+++||+|+||||||||+++|+|+.. .|.+.+.|........ .....++|+.|...+++.+ ++.+++..+
T Consensus 27 ~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~--tv~e~l~~~ 104 (510)
T PRK09700 27 TVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDEL--TVLENLYIG 104 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCC--cHHHHhhhc
Confidence 467899999999999999999999999976 7999998865422111 1234588888876677766 566666654
Q ss_pred cCCcc---hh--hhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHH
Q 010472 302 VLPID---RM--TEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDE 372 (509)
Q Consensus 302 ~~~~~---~~--~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~ 372 (509)
..... .. .........+.+.+..++|.. +..+.+..|||||+|| +.||+||+.+|.+| ||+|||+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qr----v~ia~al~~~p~lllLDEPt~~LD~~ 179 (510)
T PRK09700 105 RHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV-DLDEKVANLSISHKQM----LEIAKTLMLDAKVIIMDEPTSSLTNK 179 (510)
T ss_pred cccccccccccccCHHHHHHHHHHHHHHcCCCC-CcccchhhCCHHHHHH----HHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 32110 00 011122233445555556665 5567788999999999 99999999999998 99999999
Q ss_pred HH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 373 TR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 373 ~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
++ .+..+|+++.+.+.+++..+|++.....+++.+.+++.|+++..++.+
T Consensus 180 ~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 180 EVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchh
Confidence 99 999999999765667888889999888777788888888887655443
No 186
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=3.5e-20 Score=185.65 Aligned_cols=191 Identities=13% Similarity=0.092 Sum_probs=135.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCC-------cceEEeeCCcccccce---eeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQK-------RTGVTSTPGKTKHFQT---LIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~-------~~g~~~~~G~t~~~~~---~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
++.+|++++|+|+||||||||+++|+|+. ..|.+.+.|....... ......++|+.+...+|+. +..
T Consensus 43 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~---tv~ 119 (268)
T PRK14248 43 DIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK---SIY 119 (268)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcc---cHH
Confidence 46799999999999999999999999974 2699999887543211 1234568888887666652 566
Q ss_pred HHHHhccCCcc--hhhhHHHHHHHHHHhCCcc-chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCC
Q 010472 296 DMVASGVLPID--RMTEHRQAVQVVANRVPRH-VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSG 368 (509)
Q Consensus 296 e~v~~g~~~~~--~~~~~~~~~~~i~~~l~~~-~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsG 368 (509)
+++..+..... ........+..+.+.+... .+.. +....+..||+||+|| +.||+||+.+|+++ ||+|
T Consensus 120 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LSgGq~qr----l~laral~~~p~lllLDEPt~~ 194 (268)
T PRK14248 120 NNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKD-RLHSSALSLSGGQQQR----LCIARTLAMKPAVLLLDEPASA 194 (268)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHH-HHhcCcccCCHHHHHH----HHHHHHHhCCCCEEEEcCCCcc
Confidence 66654421100 0000111222233333221 1123 4456788999999999 99999999999998 9999
Q ss_pred CCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcccc
Q 010472 369 LPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEE 425 (509)
Q Consensus 369 LD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (509)
||+.++ .+..+|+++.++ .+++..+|++.....+++.+.+++.|++++.++.+...
T Consensus 195 LD~~~~~~l~~~l~~~~~~-~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 195 LDPISNAKIEELITELKEE-YSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred cCHHHHHHHHHHHHHHhcC-CEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999 999999999775 56788888888777777788888889988876655443
No 187
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.82 E-value=1.6e-20 Score=186.36 Aligned_cols=194 Identities=13% Similarity=0.105 Sum_probs=133.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcc-----ccc-cee----eecCeEEEEeCCCccCCCCccc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKT-----KHF-QTL----IISEKLVLCDCPGLVFPSFSIS 293 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t-----~~~-~~~----~~~~~i~l~d~pg~~~p~~~~~ 293 (509)
++.+|++++|+|+||+|||||+++|+|+.+ .|.+.+.|.. ... ... .....++++.+.......+..+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 104 (253)
T TIGR02323 25 DLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVS 104 (253)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCcccc
Confidence 467899999999999999999999999976 7899888754 211 100 1124577877764322222224
Q ss_pred HHHHHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCC
Q 010472 294 RYDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGL 369 (509)
Q Consensus 294 ~~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGL 369 (509)
..+++...+...... ........+.+.+..+++...+....+..||+||+|| +.||+||+.+|.+| |++||
T Consensus 105 ~~~~i~~~~~~~~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qr----v~laral~~~p~vlllDEP~~~L 179 (253)
T TIGR02323 105 AGANIGERLMAIGAR-HYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQR----LQIARNLVTRPRLVFMDEPTGGL 179 (253)
T ss_pred HHHHHHHHHHHhccc-chHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHH----HHHHHHHhcCCCEEEEcCCCccC
Confidence 444443221100000 0001122334444455564224566788999999999 99999999999998 99999
Q ss_pred CHHHH-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 370 PDETR-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 370 D~~~r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
|+.++ .+..+|+++.. .+..++...|.......+++.+.+++.|++++.++.+..
T Consensus 180 D~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~ 236 (253)
T TIGR02323 180 DVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQV 236 (253)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHH
Confidence 99999 99999999864 356677777888888777778888888998876654433
No 188
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2e-20 Score=186.25 Aligned_cols=190 Identities=15% Similarity=0.116 Sum_probs=133.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCccccc---ceeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHF---QTLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~---~~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|..... .....+..++++.+...+|+.+ +..
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--tv~ 103 (258)
T PRK14241 26 NIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTM--SIR 103 (258)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCC--cHH
Confidence 467899999999999999999999999873 7999999865421 1112345688888877777766 455
Q ss_pred HHHHhccCCcchhhhHHHHHHHHHHhCCccch----hhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCC
Q 010472 296 DMVASGVLPIDRMTEHRQAVQVVANRVPRHVI----ENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASS 367 (509)
Q Consensus 296 e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L----~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----Pts 367 (509)
+++..+....... ......+.+.+.+..+++ .. .....+..||+||+|| +.||+||+.+|.++ |++
T Consensus 104 ~nl~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~G~~qr----v~laral~~~p~llllDEPt~ 177 (258)
T PRK14241 104 DNVVAGLKLNGVR-NKKDLDELVEKSLRGANLWNEVKD-RLDKPGGGLSGGQQQR----LCIARAIAVEPDVLLMDEPCS 177 (258)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCchhhhh-HhhCCcccCCHHHHHH----HHHHHHHhcCCCEEEEcCCCc
Confidence 6654432110000 111111223333333333 22 4456678999999999 99999999999998 999
Q ss_pred CCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhc------ccccccCCCCccc
Q 010472 368 GLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASS------LLELHESDASDAE 424 (509)
Q Consensus 368 GLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 424 (509)
|||+.++ .+..+|+.+.++ .+++..+|.+.....+++.+.++. .|++++.++.+..
T Consensus 178 ~LD~~~~~~l~~~l~~~~~~-~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~ 240 (258)
T PRK14241 178 ALDPISTLAIEDLINELKQD-YTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKI 240 (258)
T ss_pred cCCHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHH
Confidence 9999999 999999999765 577778888888765555565554 6788776655433
No 189
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2.3e-20 Score=184.92 Aligned_cols=191 Identities=14% Similarity=0.116 Sum_probs=135.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCccccc---ceeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHF---QTLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~---~~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
++.+|++++|+|+||+|||||+++|+|... .|.+.+.|..... .....+..++|+++...+|+.+ +..
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--t~~ 103 (252)
T PRK14272 26 DVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTM--SVF 103 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCC--CHH
Confidence 467899999999999999999999999864 4899999865431 1112345688988877777766 445
Q ss_pred HHHHhccCCcc--hhhhHHHHHHHHHHhCCcc-chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCC
Q 010472 296 DMVASGVLPID--RMTEHRQAVQVVANRVPRH-VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSG 368 (509)
Q Consensus 296 e~v~~g~~~~~--~~~~~~~~~~~i~~~l~~~-~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsG 368 (509)
+++..+..... ......+....+...+... .+.. .....+..||+||+|| ++||+||+.+|.++ |++|
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G~~qr----v~laral~~~p~llllDEP~~~ 178 (252)
T PRK14272 104 DNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKD-RLKTPATGLSGGQQQR----LCIARALAVEPEILLMDEPTSA 178 (252)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhh-hhcCCcccCCHHHHHH----HHHHHHHhcCCCEEEEeCCCcc
Confidence 55543321100 0000111122222222211 1222 3356678899999999 99999999999998 9999
Q ss_pred CCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 369 LPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 369 LD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
||..++ .+..+|+++.++ .+++...|.......+++.+.+++.|++++.++.+..
T Consensus 179 LD~~~~~~l~~~l~~~~~~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 179 LDPASTARIEDLMTDLKKV-TTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred CCHHHHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999 999999999765 6778888888887777778888888888876655443
No 190
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2.3e-20 Score=184.76 Aligned_cols=190 Identities=16% Similarity=0.122 Sum_probs=136.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCccccc--ceeeecCeEEEEeCCCccCCCCcccHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHF--QTLIISEKLVLCDCPGLVFPSFSISRYD 296 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~--~~~~~~~~i~l~d~pg~~~p~~~~~~~e 296 (509)
++.+|++++|+|+||+|||||+++|+|+.. .|.+.+.|..... .....+..++|+.+...+|+ . ++.+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~--tv~~ 101 (249)
T PRK14253 25 PIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP-M--SIYE 101 (249)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc-c--cHHH
Confidence 477999999999999999999999999875 5888898865421 11123456888888766665 4 5566
Q ss_pred HHHhccCCcchh-hh-HHHHHHHHHHhCCcc-chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCC
Q 010472 297 MVASGVLPIDRM-TE-HRQAVQVVANRVPRH-VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGL 369 (509)
Q Consensus 297 ~v~~g~~~~~~~-~~-~~~~~~~i~~~l~~~-~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGL 369 (509)
++..+....... .. ....+..+.+.+... .+.. .....+..||+||+|| +.||+||+.+|.++ |++||
T Consensus 102 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~LS~G~~qr----v~laral~~~p~llllDEP~~~L 176 (249)
T PRK14253 102 NVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKD-RLKSHAFGLSGGQQQR----LCIARTIAMEPDVILMDEPTSAL 176 (249)
T ss_pred HHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhH-HhhcCcccCCHHHHHH----HHHHHHHHcCCCEEEEeCCCccC
Confidence 665432111000 00 011222233333221 1222 3455678899999999 99999999999998 99999
Q ss_pred CHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 370 PDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 370 D~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
|..++ .+.++|+++.++ .+++...|.+.....+++.++++..|++++.++.+..
T Consensus 177 D~~~~~~l~~~l~~~~~~-~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 177 DPIATHKIEELMEELKKN-YTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred CHHHHHHHHHHHHHHhcC-CeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999 999999999776 6788888888887777788888888999887665443
No 191
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=3.6e-20 Score=184.53 Aligned_cols=190 Identities=17% Similarity=0.154 Sum_probs=135.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCccccc---ceeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHF---QTLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~---~~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|..... .....+..++|+.+...+|+. ++.
T Consensus 34 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~---tv~ 110 (259)
T PRK14274 34 SIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ---SIF 110 (259)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccccc---CHH
Confidence 477999999999999999999999999864 6899999876431 111234568898887666652 566
Q ss_pred HHHHhccCCcchhhhHHHHHHHHHHhCCccchhh---HhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCC
Q 010472 296 DMVASGVLPIDRMTEHRQAVQVVANRVPRHVIEN---VCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSG 368 (509)
Q Consensus 296 e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~---~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsG 368 (509)
+++..+.... ...........+.+.+..+++.. ......+..||+||+|| +.||+||+.+|.++ ||+|
T Consensus 111 enl~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qr----v~laral~~~p~llllDEPt~~ 185 (259)
T PRK14274 111 DNVAYGPRIH-GTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQR----LCIARALATNPDVLLMDEPTSA 185 (259)
T ss_pred HHHHhHHHhc-CCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHH----HHHHHHHhcCCCEEEEcCCccc
Confidence 6665432111 10011111122223333333321 13356678899999999 99999999999998 9999
Q ss_pred CCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 369 LPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 369 LD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
||..++ .+..+|+.+.++ .+++..+|++.....+++.+.++..|++++.++.+..
T Consensus 186 LD~~~~~~l~~~l~~~~~~-~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 186 LDPVSTRKIEELILKLKEK-YTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred CCHHHHHHHHHHHHHHhcC-CEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999 999999999775 6778888888887777778888888999876665543
No 192
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.8e-20 Score=184.90 Aligned_cols=184 Identities=14% Similarity=0.037 Sum_probs=135.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc-eeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ-TLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~-~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|...... ....+..++|+.+...+|+ . +..+++..+.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~--tv~e~l~~~~ 101 (241)
T PRK14250 25 KFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-G--TVKDNIEYGP 101 (241)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-h--hHHHHHhcch
Confidence 467899999999999999999999999976 79999988654211 1123456888888766654 3 5666665432
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHH
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AAR 377 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~ 377 (509)
.... ... ..+.+.+..+++...+....+..||+||+|| +.||+||+.+|+++ |++|||..++ .+.
T Consensus 102 ~~~~---~~~---~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qr----l~la~al~~~p~llllDEPt~~LD~~~~~~l~ 171 (241)
T PRK14250 102 MLKG---EKN---VDVEYYLSIVGLNKEYATRDVKNLSGGEAQR----VSIARTLANNPEVLLLDEPTSALDPTSTEIIE 171 (241)
T ss_pred hhcC---cHH---HHHHHHHHHcCCCHHHhhCCcccCCHHHHHH----HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 2111 111 1233344444564225567788999999999 99999999999998 9999999999 999
Q ss_pred HHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 378 IILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 378 ~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
.+|+.+.+ .+.+++..+|++.....+++.+.+++.|++++.++.+
T Consensus 172 ~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 217 (241)
T PRK14250 172 ELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTY 217 (241)
T ss_pred HHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHH
Confidence 99999865 3456777888888877777788888888887765543
No 193
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.82 E-value=4.2e-20 Score=185.18 Aligned_cols=208 Identities=13% Similarity=0.074 Sum_probs=145.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce----eeecCeEEEEeCCC--ccCCCCcccHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT----LIISEKLVLCDCPG--LVFPSFSISRYDM 297 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~----~~~~~~i~l~d~pg--~~~p~~~~~~~e~ 297 (509)
.+.+|++++|+|+||+|||||+++|+|+.. +|.+.+.|....... ......++|+.+.. .+++.. +..++
T Consensus 34 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~--t~~~~ 111 (268)
T PRK10419 34 SLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRK--TVREI 111 (268)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCC--CHHHH
Confidence 477899999999999999999999999976 799999987542211 12345688888865 234444 44444
Q ss_pred HHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHH
Q 010472 298 VASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDET 373 (509)
Q Consensus 298 v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~ 373 (509)
+.......... ........+.+.+..+++...+....+..||+||+|| +.||+||+.+|.++ |++|||..+
T Consensus 112 l~~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qr----l~laral~~~p~lllLDEPt~~LD~~~ 186 (268)
T PRK10419 112 IREPLRHLLSL-DKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQR----VCLARALAVEPKLLILDEAVSNLDLVL 186 (268)
T ss_pred HHHHHHhhccC-CHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHH----HHHHHHHhcCCCEEEEeCCCcccCHHH
Confidence 43221100000 1111222334444445564224456788999999999 99999999999998 999999999
Q ss_pred H-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhccCC
Q 010472 374 R-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDDLS 445 (509)
Q Consensus 374 r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (509)
+ .+.++|+++.+ ++.+++...|+......+++.++++..|++++.++.+..+.. ..|....++....
T Consensus 187 ~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~-----~~~~~~~~~~~~~ 255 (268)
T PRK10419 187 QAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLTF-----SSPAGRVLQNAVL 255 (268)
T ss_pred HHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhccCC-----CCHHHHHHHHhcc
Confidence 9 99999999875 467788888888888877778888888999887666554432 2367777776543
No 194
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.82 E-value=3.2e-20 Score=178.45 Aligned_cols=170 Identities=10% Similarity=-0.008 Sum_probs=123.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||||||||+++|+|... .|.+.+.|.............++++.+...+++.+ +..+++..+..
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--tv~e~l~~~~~ 100 (204)
T PRK13538 23 TLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTEL--TALENLRFYQR 100 (204)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCC--cHHHHHHHHHH
Confidence 478999999999999999999999999976 79999988654321122334577777766666666 55555544321
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
.. .. .. ...+.+.+..+++.. +....+..||+||+|| ++||+|++.+|.++ ||+|||..++ .+..
T Consensus 101 ~~-~~-~~---~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qr----l~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 170 (204)
T PRK13538 101 LH-GP-GD---DEALWEALAQVGLAG-FEDVPVRQLSAGQQRR----VALARLWLTRAPLWILDEPFTAIDKQGVARLEA 170 (204)
T ss_pred hc-Cc-cH---HHHHHHHHHHcCCHH-HhhCChhhcCHHHHHH----HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 10 00 11 123334444556665 5567788999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhcCCccEEEcCCCCChhhccchhh
Q 010472 379 ILKDFIDGKLPHFEMPPGMSHEEVGMEDT 407 (509)
Q Consensus 379 lLkd~~~gkl~~~~~pp~~~~~~~~~~~~ 407 (509)
+|+++.+.+..++...|+...-..|....
T Consensus 171 ~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 199 (204)
T PRK13538 171 LLAQHAEQGGMVILTTHQDLPVASDKVRK 199 (204)
T ss_pred HHHHHHHCCCEEEEEecChhhhccCCceE
Confidence 99998654456666777776665565543
No 195
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2.6e-20 Score=187.55 Aligned_cols=190 Identities=15% Similarity=0.114 Sum_probs=136.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCcccccc--eeeecCeEEEEeCCCccCCCCcccHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHFQ--TLIISEKLVLCDCPGLVFPSFSISRYD 296 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~~--~~~~~~~i~l~d~pg~~~p~~~~~~~e 296 (509)
++.+|++++|+|+||+|||||+++|+|+.. .|.+.+.|...... ....+..++|+.+...+|+ . +..+
T Consensus 43 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~--tv~e 119 (276)
T PRK14271 43 GFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-M--SIMD 119 (276)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC-c--cHHH
Confidence 578999999999999999999999999975 78899988654311 1123456888888766666 4 5666
Q ss_pred HHHhccCCcchhhhHHHHHHHHHHhCCccchhh---HhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCC
Q 010472 297 MVASGVLPIDRMTEHRQAVQVVANRVPRHVIEN---VCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGL 369 (509)
Q Consensus 297 ~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~---~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGL 369 (509)
++..+....... ........+.+.+..+++.. ......+..||+||+|| +.||+||+.+|.++ |++||
T Consensus 120 ni~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qr----l~LAral~~~p~lllLDEPt~~L 194 (276)
T PRK14271 120 NVLAGVRAHKLV-PRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQL----LCLARTLAVNPEVLLLDEPTSAL 194 (276)
T ss_pred HHHHHHHhccCC-CHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHH----HHHHHHHhcCCCEEEEcCCcccC
Confidence 665443211100 11111112222333333422 12345678899999999 99999999999998 99999
Q ss_pred CHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 370 PDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 370 D~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
|..++ .+..+|+.+.++ .+++...|.+.....+++.+.++..|++++.++.+..
T Consensus 195 D~~~~~~l~~~L~~~~~~-~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~ 249 (276)
T PRK14271 195 DPTTTEKIEEFIRSLADR-LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249 (276)
T ss_pred CHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999 999999999775 6888888998887777778888888888876655444
No 196
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=3.2e-20 Score=184.02 Aligned_cols=192 Identities=16% Similarity=0.128 Sum_probs=136.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCccccc---ceeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHF---QTLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~---~~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
++.+|++++|+|+||+|||||+++|+|+.. .|.+.+.|..... ........++|+.+...+|+ . +..
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~--tv~ 103 (252)
T PRK14255 27 DFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-F--SIY 103 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC-C--cHH
Confidence 467899999999999999999999999753 6999999875431 11123456888888766666 4 556
Q ss_pred HHHHhccCCcc-hhhhH-HHHHHHHHHhCCcc-chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCC
Q 010472 296 DMVASGVLPID-RMTEH-RQAVQVVANRVPRH-VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSG 368 (509)
Q Consensus 296 e~v~~g~~~~~-~~~~~-~~~~~~i~~~l~~~-~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsG 368 (509)
+++..+..... ...+. ...+..+.+.+... .+.. +....+..||+||+|| ++||+||+.+|.++ |++|
T Consensus 104 ~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-~~~~~~~~LS~Gq~qr----v~laral~~~p~llllDEPt~~ 178 (252)
T PRK14255 104 ENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKD-HLHESALSLSGGQQQR----VCIARVLAVKPDVILLDEPTSA 178 (252)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhh-HHhcCcccCCHHHHHH----HHHHHHHhcCCCEEEEcCCCcc
Confidence 66654321100 00010 11222223333211 1233 4456788999999999 99999999999998 9999
Q ss_pred CCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccC
Q 010472 369 LPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEV 426 (509)
Q Consensus 369 LD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (509)
||..++ .+..+|+++.++ .+++...|.+.....+++.+++++.|++++.++......
T Consensus 179 LD~~~~~~l~~~l~~~~~~-~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14255 179 LDPISSTQIENMLLELRDQ-YTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFL 236 (252)
T ss_pred CCHHHHHHHHHHHHHHHhC-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999 999999999775 677888888888777777888888899987766544443
No 197
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.7e-20 Score=189.93 Aligned_cols=188 Identities=13% Similarity=0.030 Sum_probs=134.5
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc------ceeeecCeEEEEeCCCc--cCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF------QTLIISEKLVLCDCPGL--VFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~------~~~~~~~~i~l~d~pg~--~~p~~~~~~~ 295 (509)
++.+|+++||+|+||||||||+++|+|+.. .|.+.+.|..... .....+..++|+.+... +++ .+..
T Consensus 33 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~---~tv~ 109 (289)
T PRK13645 33 TFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQ---ETIE 109 (289)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhh---hHHH
Confidence 477899999999999999999999999986 7999988865321 11123456888877642 222 2556
Q ss_pred HHHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCH
Q 010472 296 DMVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPD 371 (509)
Q Consensus 296 e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~ 371 (509)
+++..+..... . ........+.+.+..++|...+....+..||+||+|| +.||+||+.+|.+| |++|||+
T Consensus 110 enl~~~~~~~~-~-~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qr----v~laral~~~p~lLlLDEPt~~LD~ 183 (289)
T PRK13645 110 KDIAFGPVNLG-E-NKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRR----VALAGIIAMDGNTLVLDEPTGGLDP 183 (289)
T ss_pred HHHHHHHHHcC-C-CHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHH----HHHHHHHHhCCCEEEEeCCcccCCH
Confidence 66654322110 0 1111122333444444563225567788999999999 99999999999998 9999999
Q ss_pred HHH-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 372 ETR-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 372 ~~r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
.++ .+..+|+.+.+ .+.+++...|.+.....+++.+.+++.|++++.++.+
T Consensus 184 ~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (289)
T PRK13645 184 KGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPF 236 (289)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999 99999999865 3567777888888877777788888888888765543
No 198
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.82 E-value=2.4e-20 Score=203.21 Aligned_cols=184 Identities=11% Similarity=0.066 Sum_probs=140.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce-ee-ecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT-LI-ISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~-~~-~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
++.+|+++||+|+||||||||+++|+|+.. .|.+.+.|....... .. ....++|+.|...+++.+ ++.+++..+
T Consensus 33 ~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~--tv~e~l~~~ 110 (510)
T PRK15439 33 TLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNL--SVKENILFG 110 (510)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCC--cHHHHhhcc
Confidence 467899999999999999999999999976 799999886542211 11 123588888876677766 667777655
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
.... . .....+.+.+..++|.. +..+.+..|||||+|| ++||+||+.+|.+| ||+|||+..+ .+
T Consensus 111 ~~~~---~---~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qr----v~la~aL~~~p~lllLDEPt~~LD~~~~~~l 179 (510)
T PRK15439 111 LPKR---Q---ASMQKMKQLLAALGCQL-DLDSSAGSLEVADRQI----VEILRGLMRDSRILILDEPTASLTPAETERL 179 (510)
T ss_pred cccc---h---HHHHHHHHHHHHcCCCc-cccCChhhCCHHHHHH----HHHHHHHHcCCCEEEEECCCCCCCHHHHHHH
Confidence 3211 1 11223344444555655 5567788999999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 377 RIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 377 ~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
..+|+++.+.+.+++..+|++.....+++.+.+++.|+++..++.+
T Consensus 180 ~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~ 225 (510)
T PRK15439 180 FSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTA 225 (510)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChH
Confidence 9999999765677888999998887777788888888887655443
No 199
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.82 E-value=5.6e-20 Score=174.67 Aligned_cols=163 Identities=15% Similarity=0.162 Sum_probs=115.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce---eeecCeEEEEeCCC--ccCCCCcccHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT---LIISEKLVLCDCPG--LVFPSFSISRYDMV 298 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~---~~~~~~i~l~d~pg--~~~p~~~~~~~e~v 298 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|....... ......++++++.. .+++ . +..+++
T Consensus 14 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~--tv~~nl 90 (190)
T TIGR01166 14 AAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA-A--DVDQDV 90 (190)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc-c--cHHHHH
Confidence 478899999999999999999999999976 788999886543111 12244678888764 2332 3 566666
Q ss_pred HhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 299 ASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 299 ~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
..+..... . ........+.+.+..++|.. +....+..||+||+|| +.||+||+.+|.++ |++|||+..+
T Consensus 91 ~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----v~laral~~~p~llllDEPt~~LD~~~~ 163 (190)
T TIGR01166 91 AFGPLNLG-L-SEAEVERRVREALTAVGASG-LRERPTHCLSGGEKKR----VAIAGAVAMRPDVLLLDEPTAGLDPAGR 163 (190)
T ss_pred HHHHHHcC-C-CHHHHHHHHHHHHHHcCchh-hhhCChhhCCHHHHHH----HHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 54321100 1 11112223444444556665 5667788999999999 99999999999998 9999999999
Q ss_pred -HHHHHHHHhhcCCccEEEcCCCCC
Q 010472 375 -AARIILKDFIDGKLPHFEMPPGMS 398 (509)
Q Consensus 375 -~~~~lLkd~~~gkl~~~~~pp~~~ 398 (509)
.+..+|+++.+.+..++...|++.
T Consensus 164 ~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 164 EQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred HHHHHHHHHHHHcCCEEEEEeeccc
Confidence 999999999764455555555543
No 200
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2.8e-20 Score=183.91 Aligned_cols=191 Identities=17% Similarity=0.123 Sum_probs=136.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCC-----cceEEeeCCcccccc-eeeecCeEEEEeCCCccCCCCcccHHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQK-----RTGVTSTPGKTKHFQ-TLIISEKLVLCDCPGLVFPSFSISRYDMVA 299 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~-----~~g~~~~~G~t~~~~-~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~ 299 (509)
++.+|++++|+|+||+|||||+++|+|+. ..|.+.+.|...... ....+..++|+.+...+|+ . ++.+++.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~--tv~eni~ 100 (246)
T PRK14269 24 QIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-K--SIYENIS 100 (246)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-c--cHHHHhh
Confidence 46789999999999999999999999985 279999999754321 1123456888888766665 3 6667765
Q ss_pred hccCCcchhhhHHHHHHHHHHhCCccchhh---HhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHH
Q 010472 300 SGVLPIDRMTEHRQAVQVVANRVPRHVIEN---VCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDE 372 (509)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~---~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~ 372 (509)
.+................+.+.+..+++.. ......+..||+||+|| ++||+||+.+|+++ |++|||..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr----v~laral~~~p~lllLDEP~~~LD~~ 176 (246)
T PRK14269 101 YAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQR----LCIARALAIKPKLLLLDEPTSALDPI 176 (246)
T ss_pred hHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHH----HHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 432110000000111122333333334421 13355678899999999 99999999999998 99999999
Q ss_pred HH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 373 TR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 373 ~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
++ .+..+|+.+..| .+++..+|+......+++.+.++..|++++.++.+..
T Consensus 177 ~~~~l~~~l~~~~~~-~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 228 (246)
T PRK14269 177 SSGVIEELLKELSHN-LSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEF 228 (246)
T ss_pred HHHHHHHHHHHHhCC-CEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHH
Confidence 99 999999998774 5788888888888777788888888999876655433
No 201
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=3.6e-20 Score=186.29 Aligned_cols=192 Identities=14% Similarity=0.072 Sum_probs=137.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCccccc---ceeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHF---QTLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~---~~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
.+.+|++++|+|+||+|||||+++|+|+.. .|.+.+.|..... .....+..++|+++...+|+. +..
T Consensus 42 ~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~---tv~ 118 (274)
T PRK14265 42 KIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK---SIY 118 (274)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccc---cHH
Confidence 478999999999999999999999999863 6889998865421 111234578888887666652 456
Q ss_pred HHHHhccCCcchhhhHHHHHHHHHHhCCcc-chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 296 DMVASGVLPIDRMTEHRQAVQVVANRVPRH-VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 296 e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~-~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
+++..+................+.+.+... .+.+ +....+..||+||+|| +.||+||+.+|++| |++|||
T Consensus 119 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LSgGq~qr----v~LAraL~~~p~lllLDEPt~~LD 193 (274)
T PRK14265 119 ENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-KLKEKGTALSGGQQQR----LCIARAIAMKPDVLLMDEPCSALD 193 (274)
T ss_pred HHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-HhcCCcccCCHHHHHH----HHHHHHHhhCCCEEEEeCCcccCC
Confidence 666544211100001111222233333221 1223 3456678899999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhc---------ccccccCCCCccccC
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASS---------LLELHESDASDAEEV 426 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 426 (509)
..++ .+..+|+.+.++ ..++...|+......+++.++++. .|++++.++.+....
T Consensus 194 ~~~~~~l~~~L~~~~~~-~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~~ 258 (274)
T PRK14265 194 PISTRQVEELCLELKEQ-YTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFG 258 (274)
T ss_pred HHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHHh
Confidence 9999 999999999775 678888899988877777777775 688888777765543
No 202
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=5.4e-20 Score=182.30 Aligned_cols=191 Identities=16% Similarity=0.098 Sum_probs=135.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCC---c----ceEEeeCCcccccc---eeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQK---R----TGVTSTPGKTKHFQ---TLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~---~----~g~~~~~G~t~~~~---~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
++.+|++++|+|+||+|||||+++|+|+. + .|.+.+.|...... ....+..++|+.+...+++ . +..
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~--tv~ 101 (250)
T PRK14245 25 EIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-K--SIF 101 (250)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCc-c--cHH
Confidence 46789999999999999999999999962 2 59999998764321 1123456888888766665 3 556
Q ss_pred HHHHhccCCcch--hhhHHHHHHHHHHhCCccc-hhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCC
Q 010472 296 DMVASGVLPIDR--MTEHRQAVQVVANRVPRHV-IENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSG 368 (509)
Q Consensus 296 e~v~~g~~~~~~--~~~~~~~~~~i~~~l~~~~-L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsG 368 (509)
+++..+...... .......+..+.+.++... +.. +....+..||+||+|| ++||+||+.+|+++ |++|
T Consensus 102 ~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~G~~qr----v~laral~~~p~lllLDEPt~~ 176 (250)
T PRK14245 102 ENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD-KLKESAFALSGGQQQR----LCIARAMAVSPSVLLMDEPASA 176 (250)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhh-hhhCCcccCCHHHHHH----HHHHHHHhcCCCEEEEeCCCcc
Confidence 666544211000 0001122233333333211 122 3456678999999999 99999999999998 9999
Q ss_pred CCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcccc
Q 010472 369 LPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEE 425 (509)
Q Consensus 369 LD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (509)
||+.++ .+..+|+++.++ .+++..+|+......+++.+.+++.|++++.++.+...
T Consensus 177 LD~~~~~~l~~~l~~~~~~-~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 177 LDPISTAKVEELIHELKKD-YTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred CCHHHHHHHHHHHHHHhcC-CeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999 999999999765 56778888888877766778888888888876665443
No 203
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=3.5e-20 Score=185.32 Aligned_cols=192 Identities=17% Similarity=0.123 Sum_probs=135.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCccccc---ceeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHF---QTLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~---~~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
++.+|++++|+|+||+|||||+++|+|+.. .|.+.+.|..... .....+..++|+.+...+|+ . +..
T Consensus 32 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~--tv~ 108 (264)
T PRK14243 32 DIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFP-K--SIY 108 (264)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCcccc-c--cHH
Confidence 477899999999999999999999999853 6899998865421 11223456888888665655 2 566
Q ss_pred HHHHhccCCcchhhhHHHHHHHHHHhCCcc-chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 296 DMVASGVLPIDRMTEHRQAVQVVANRVPRH-VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 296 e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~-~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
+++..+...........+.+..+.+.+... .+.. +....+..||+||+|| ++||+||+.+|+++ |++|||
T Consensus 109 enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LSgGq~qr----v~laral~~~p~lllLDEPt~~LD 183 (264)
T PRK14243 109 DNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-KLKQSGLSLSGGQQQR----LCIARAIAVQPEVILMDEPCSALD 183 (264)
T ss_pred HHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-HhcCCcccCCHHHHHH----HHHHHHHhcCCCEEEEeCCCccCC
Confidence 666554321100001112222233333221 1122 3456678899999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhc---------ccccccCCCCccccC
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASS---------LLELHESDASDAEEV 426 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 426 (509)
..++ .+..+|+.+.++ .+++...|+......+++.+.+++ .|++++.++.+....
T Consensus 184 ~~~~~~l~~~L~~~~~~-~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~~ 248 (264)
T PRK14243 184 PISTLRIEELMHELKEQ-YTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIFN 248 (264)
T ss_pred HHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHHh
Confidence 9999 999999999876 577778899888777777887776 678887766655443
No 204
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.81 E-value=5.9e-20 Score=176.28 Aligned_cols=167 Identities=12% Similarity=0.012 Sum_probs=118.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|+++||+|+||+|||||+++|+|+.+ .|.+.+.|..........+..++|+.+...+++.. +..+++.....
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~--tv~e~l~~~~~ 99 (201)
T cd03231 22 TLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTL--SVLENLRFWHA 99 (201)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCc--CHHHHHHhhcc
Confidence 467899999999999999999999999976 78898888664322223345688887765555555 55566544321
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
. . .... +.+.+..+++.. +....+..||+||+|| ++||+|++.+|+++ |++|||+..+ .+..
T Consensus 100 -~---~-~~~~---~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----l~laral~~~p~llllDEPt~~LD~~~~~~l~~ 166 (201)
T cd03231 100 -D---H-SDEQ---VEEALARVGLNG-FEDRPVAQLSAGQQRR----VALARLLLSGRPLWILDEPTTALDKAGVARFAE 166 (201)
T ss_pred -c---c-cHHH---HHHHHHHcCChh-hhcCchhhCCHHHHHH----HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 1 0 1122 333334445655 5567788999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhcCCccEEEcCCCCChhhccchhh
Q 010472 379 ILKDFIDGKLPHFEMPPGMSHEEVGMEDT 407 (509)
Q Consensus 379 lLkd~~~gkl~~~~~pp~~~~~~~~~~~~ 407 (509)
+|+++.+.+.+++...|+......++..+
T Consensus 167 ~l~~~~~~g~tiii~sH~~~~~~~~~~~~ 195 (201)
T cd03231 167 AMAGHCARGGMVVLTTHQDLGLSEAGARE 195 (201)
T ss_pred HHHHHHhCCCEEEEEecCchhhhhcccee
Confidence 99998654444555556544333344333
No 205
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.81 E-value=4.5e-20 Score=181.57 Aligned_cols=189 Identities=15% Similarity=0.142 Sum_probs=139.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||+|||||+++|+|... .|.+.+.|....... .....++|+++...+|+.. +..+++..+..
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~-~~~~~i~~~~q~~~~~~~~--t~~enl~~~~~ 98 (237)
T TIGR00968 22 EVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH-ARDRKIGFVFQHYALFKHL--TVRDNIAFGLE 98 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC-hhhcCEEEEecChhhccCC--cHHHHHHhHHH
Confidence 478999999999999999999999999976 789999886543211 2245688888877677665 34555543321
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
.. .. ........+.+.+..+++.. +....+..||+||+|| +.||+||+.+|.++ |++|||..++ .+..
T Consensus 99 ~~-~~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~lS~G~~qr----l~laral~~~p~llllDEP~~~LD~~~~~~~~~ 171 (237)
T TIGR00968 99 IR-KH-PKAKIKARVEELLELVQLEG-LGDRYPNQLSGGQRQR----VALARALAVEPQVLLLDEPFGALDAKVRKELRS 171 (237)
T ss_pred hc-CC-CHHHHHHHHHHHHHHcCCHh-HhhCChhhCCHHHHHH----HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 00 00 11111223344444455655 5667788999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhcC-CccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 379 ILKDFIDG-KLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 379 lLkd~~~g-kl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
+|+++.+. +.+++...|.......+++.++.+..|++++.++.+..
T Consensus 172 ~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 218 (237)
T TIGR00968 172 WLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218 (237)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHH
Confidence 99998763 56777777888877777778888888998877665543
No 206
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=8.8e-20 Score=180.89 Aligned_cols=204 Identities=14% Similarity=0.089 Sum_probs=142.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCccccc---ceeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHF---QTLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~---~~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
++.+|++++|+|+||+|||||+++|+|+.. .|.+.+.|..... .....+..++|+.+...+|+. +..
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~---tv~ 102 (251)
T PRK14249 26 DFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK---SIF 102 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcC---cHH
Confidence 467899999999999999999999999976 3889888865421 111234578899887766653 556
Q ss_pred HHHHhccCCcc-hhh-hHHHHHHHHHHhCCcc-chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCC
Q 010472 296 DMVASGVLPID-RMT-EHRQAVQVVANRVPRH-VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSG 368 (509)
Q Consensus 296 e~v~~g~~~~~-~~~-~~~~~~~~i~~~l~~~-~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsG 368 (509)
+++..+..... ... .....+..+...+... .+.. +....+..||+||+|| +.||+||+.+|+++ |++|
T Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~Gq~qr----v~laral~~~p~lllLDEPt~~ 177 (251)
T PRK14249 103 DNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKD-NLHKSGLALSGGQQQR----LCIARVLAIEPEVILMDEPCSA 177 (251)
T ss_pred HHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhh-HhhCCcccCCHHHHHH----HHHHHHHhcCCCEEEEeCCCcc
Confidence 66654321100 000 0112222233333211 1223 4556788999999999 99999999999998 9999
Q ss_pred CCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhc
Q 010472 369 LPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLD 442 (509)
Q Consensus 369 LD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (509)
||..++ .+..+|+++.++ .+++...|++.....+++.+.+++.|.+++.++.+....... .+.+.+.|.
T Consensus 178 LD~~~~~~l~~~l~~~~~~-~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~----~~~~~~~~~ 247 (251)
T PRK14249 178 LDPVSTMRIEELMQELKQN-YTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRPR----DKRTEDYIT 247 (251)
T ss_pred CCHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHhCCC----ChHHHHHHh
Confidence 999999 999999999654 678888899998888888888889999987766554433222 244555554
No 207
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.81 E-value=3.4e-20 Score=186.27 Aligned_cols=190 Identities=12% Similarity=0.067 Sum_probs=135.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc----------ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR----------TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISR 294 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~----------~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~ 294 (509)
.+.+|++++|+|+||||||||+++|+|+.. .|.+.+.|..... ........++++++....++.+ +.
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~--tv 100 (272)
T PRK13547 23 RIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAF--SA 100 (272)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCC--cH
Confidence 467899999999999999999999999875 5888888865421 1112233467887764433344 56
Q ss_pred HHHHHhccCCcchh-h-hHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHH---------cCCc
Q 010472 295 YDMVASGVLPIDRM-T-EHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCA---------SRGY 363 (509)
Q Consensus 295 ~e~v~~g~~~~~~~-~-~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~---------~p~l 363 (509)
.+++..+.++.... . ........+.+.+..+++.. +....+..||+||+|| +.||+||+. +|.+
T Consensus 101 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qr----v~laral~~~~~~~~~~~~p~l 175 (272)
T PRK13547 101 REIVLLGRYPHARRAGALTHRDGEIAWQALALAGATA-LVGRDVTTLSGGELAR----VQFARVLAQLWPPHDAAQPPRY 175 (272)
T ss_pred HHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHh-hhcCCcccCCHHHHHH----HHHHHHHhccccccccCCCCCE
Confidence 77776554321100 0 00111223344444455665 4567788999999999 999999994 8998
Q ss_pred e----eCCCCCHHHH-HHHHHHHHhhcC-CccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 364 V----ASSGLPDETR-AARIILKDFIDG-KLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 364 L----PtsGLD~~~r-~~~~lLkd~~~g-kl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
+ ||+|||..++ .+..+|+++.+. +.+++...|.+.....+++.+.++..|++++.++.+
T Consensus 176 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (272)
T PRK13547 176 LLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPA 240 (272)
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecCHH
Confidence 8 9999999999 999999998753 567777888888877677788888888888765543
No 208
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=5.5e-20 Score=176.75 Aligned_cols=161 Identities=11% Similarity=0.087 Sum_probs=122.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-----ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHh
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-----TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVAS 300 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-----~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~ 300 (509)
.+.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|.............++|+.+...+++.+ ++.+++..
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~--tv~~~l~~ 106 (202)
T cd03233 29 VVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTL--TVRETLDF 106 (202)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCC--cHHHHHhh
Confidence 478999999999999999999999999975 78999988654322122345688888876666665 45555432
Q ss_pred ccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-H
Q 010472 301 GVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-A 375 (509)
Q Consensus 301 g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~ 375 (509)
+.. . . ....+..||+||+|| +.||+||+.+|.++ |++|||..++ .
T Consensus 107 ~~~--------------~----~--------~~~~~~~LS~Ge~qr----l~laral~~~p~llllDEPt~~LD~~~~~~ 156 (202)
T cd03233 107 ALR--------------C----K--------GNEFVRGISGGERKR----VSIAEALVSRASVLCWDNSTRGLDSSTALE 156 (202)
T ss_pred hhh--------------h----c--------cccchhhCCHHHHHH----HHHHHHHhhCCCEEEEcCCCccCCHHHHHH
Confidence 210 0 0 234466899999999 99999999999998 9999999999 9
Q ss_pred HHHHHHHhhc--CCccEEEcCCCCChhhccchhhHhhcccccccC
Q 010472 376 ARIILKDFID--GKLPHFEMPPGMSHEEVGMEDTQASSLLELHES 418 (509)
Q Consensus 376 ~~~lLkd~~~--gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~ 418 (509)
+..+|+++.+ +.+++++..|.......+++.+.++..|+++..
T Consensus 157 ~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~ 201 (202)
T cd03233 157 ILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYY 201 (202)
T ss_pred HHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEec
Confidence 9999999865 345566667776666667778888888887653
No 209
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=4.2e-20 Score=186.89 Aligned_cols=190 Identities=14% Similarity=0.087 Sum_probs=136.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCC-------cceEEeeCCcccccc---eeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQK-------RTGVTSTPGKTKHFQ---TLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~-------~~g~~~~~G~t~~~~---~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
.+.+|++++|+|+||||||||+++|+|+. ..|.+.+.|...... ....+..++|+.+...+|+. +..
T Consensus 61 ~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~---tv~ 137 (286)
T PRK14275 61 DILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK---SIF 137 (286)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCcc---CHH
Confidence 57899999999999999999999999973 478999988654321 11234568898887666652 666
Q ss_pred HHHHhccCCcc--hhhhHHHHHHHHHHhCCcc-chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCC
Q 010472 296 DMVASGVLPID--RMTEHRQAVQVVANRVPRH-VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSG 368 (509)
Q Consensus 296 e~v~~g~~~~~--~~~~~~~~~~~i~~~l~~~-~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsG 368 (509)
+++..+..... ........+..+.+.++.. .+.+ +....+..||+||+|| +.||+||+.+|.++ |++|
T Consensus 138 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LSgGq~qr----v~LAraL~~~p~lllLDEPt~g 212 (286)
T PRK14275 138 DNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSD-RLDKNALGLSGGQQQR----LCVARTLAVEPEILLLDEPTSA 212 (286)
T ss_pred HHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhh-HhhCChhhCCHHHHHH----HHHHHHHhcCCCEEEEeCCCcc
Confidence 66654421100 0001112222333333321 1223 4456678999999999 99999999999998 9999
Q ss_pred CCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 369 LPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 369 LD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
||..++ .+.++|+++..+ ..++...|+......+++.+.+++.|++++.++.+..
T Consensus 213 LD~~~~~~l~~~L~~~~~~-~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 213 LDPKATAKIEDLIQELRGS-YTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred CCHHHHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999 999999999775 6778888888887777778888888898877665443
No 210
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=4.6e-20 Score=182.92 Aligned_cols=190 Identities=14% Similarity=0.111 Sum_probs=133.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCcccccc---eeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHFQ---TLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~~---~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
++.+|++++|+|+||+|||||+++|+|+.. .|.+.+.|...... ....+..++|+.+...+|+. ++.
T Consensus 27 ~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~---tv~ 103 (251)
T PRK14244 27 DIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK---SIY 103 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccC---CHH
Confidence 477999999999999999999999999863 79999988653211 11234568888887666653 455
Q ss_pred HHHHhccCCcchhhhHHHHHHHHHHhCCccchhh---HhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCC
Q 010472 296 DMVASGVLPIDRMTEHRQAVQVVANRVPRHVIEN---VCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSG 368 (509)
Q Consensus 296 e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~---~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsG 368 (509)
+++..+................+.+.+..+++.. ......+..||+||+|| +.||+||+.+|.++ |++|
T Consensus 104 ~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr----v~laral~~~p~llllDEPt~~ 179 (251)
T PRK14244 104 DNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQR----LCIARAIAVKPTMLLMDEPCSA 179 (251)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHH----HHHHHHHhcCCCEEEEeCCCcc
Confidence 6655432110100000111122333333344432 12345677899999999 99999999999998 9999
Q ss_pred CCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 369 LPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 369 LD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
||..++ .+..+|+++.+| .+++...|++.....+++.+.+++.|++++.++.+.
T Consensus 180 LD~~~~~~l~~~l~~~~~~-~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (251)
T PRK14244 180 LDPVATNVIENLIQELKKN-FTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQE 234 (251)
T ss_pred CCHHHHHHHHHHHHHHhcC-CeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 999999 999999999764 678888888888777777888888888887655433
No 211
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.81 E-value=4.3e-20 Score=200.73 Aligned_cols=191 Identities=12% Similarity=0.042 Sum_probs=138.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc----ceEEeeCCccccccee--eecCeEEEEeCCCccCCCCcccHHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR----TGVTSTPGKTKHFQTL--IISEKLVLCDCPGLVFPSFSISRYDMVA 299 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~----~g~~~~~G~t~~~~~~--~~~~~i~l~d~pg~~~p~~~~~~~e~v~ 299 (509)
++.+|+++||+|+||||||||+++|+|+.+ .|.+.+.|........ ..+..++|+.|...+++.+ ++.+++.
T Consensus 23 ~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~--tv~~~l~ 100 (500)
T TIGR02633 23 EVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPEL--SVAENIF 100 (500)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCC--cHHHHHH
Confidence 467899999999999999999999999975 6889888865422111 1234688888876677766 5566665
Q ss_pred hccCCc-ch-hhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHH
Q 010472 300 SGVLPI-DR-MTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDET 373 (509)
Q Consensus 300 ~g~~~~-~~-~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~ 373 (509)
.+.... .. ..........+.+.+..+++........+..|||||+|| ++||+||+.+|.++ ||+|||+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qr----v~iA~al~~~p~lllLDEPt~~LD~~~ 176 (500)
T TIGR02633 101 LGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQL----VEIAKALNKQARLLILDEPSSSLTEKE 176 (500)
T ss_pred hhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHH----HHHHHHHhhCCCEEEEeCCCCCCCHHH
Confidence 543210 00 001111222344444445565422245578899999999 99999999999998 999999999
Q ss_pred H-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 374 R-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 374 r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
+ .+.++|+++.+.+.+++..+|++......++.+.+++.|+++..++.+
T Consensus 177 ~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 226 (500)
T TIGR02633 177 TEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMS 226 (500)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcc
Confidence 9 999999999776667788889998888777788888888887765543
No 212
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.81 E-value=2.6e-20 Score=191.75 Aligned_cols=180 Identities=14% Similarity=0.117 Sum_probs=135.9
Q ss_pred EEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccCCcchhhhHH
Q 010472 235 FVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVLPIDRMTEHR 312 (509)
Q Consensus 235 lvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~~~~~~~~~~ 312 (509)
|+|+||||||||+++|+|+.+ .|.+.+.|....... .....++|+.|...+||.+ ++.+++..+.... .. ...
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~-~~~~~i~~v~q~~~l~~~~--tv~enl~~~~~~~-~~-~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-PHLRHINMVFQSYALFPHM--TVEENVAFGLKMR-KV-PRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC-HHHCCEEEEecCccccCCC--cHHHHHHHHHhhc-CC-CHH
Confidence 589999999999999999986 799999997643211 1235688988887788877 5666766543211 11 111
Q ss_pred HHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHHHHHHhhc-C
Q 010472 313 QAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARIILKDFID-G 386 (509)
Q Consensus 313 ~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~lLkd~~~-g 386 (509)
.....+.+.+..++|.. +..+.+..|||||+|| ++||+||+.+|.++ |++|||...+ .+..+|+++.+ .
T Consensus 76 ~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qR----valaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEE-FADRKPHQLSGGQQQR----VALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcc-hhcCChhhCCHHHHHH----HHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 12233444455556665 5677889999999999 99999999999998 9999999999 99999999865 4
Q ss_pred CccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 387 KLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 387 kl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
+.+++..+|++.+...+++.+++++.|+++..++.+..
T Consensus 151 g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~ 188 (325)
T TIGR01187 151 GITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEI 188 (325)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 66778888999888888888899999998876655433
No 213
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=4.6e-20 Score=182.82 Aligned_cols=188 Identities=17% Similarity=0.118 Sum_probs=134.5
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCcccccc---eeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHFQ---TLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~~---~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|...... ....+..++++.+...+|+ . +..
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~--tv~ 102 (251)
T PRK14251 26 DFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-F--SVY 102 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCC-C--cHH
Confidence 467899999999999999999999999973 79999988754211 1123456888877655554 3 566
Q ss_pred HHHHhccCCcchh-hh-HHHHHHHHHHhCCccchh---hHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eC
Q 010472 296 DMVASGVLPIDRM-TE-HRQAVQVVANRVPRHVIE---NVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----AS 366 (509)
Q Consensus 296 e~v~~g~~~~~~~-~~-~~~~~~~i~~~l~~~~L~---~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----Pt 366 (509)
+++..+....... .. ....+..+.+.+ ++. .......+..||+||+|| ++||+||+.+|+++ |+
T Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~~l~~~---~l~~~~~~~~~~~~~~LS~Gq~qr----~~laral~~~p~llllDEP~ 175 (251)
T PRK14251 103 DNVAYGLKIAGVKDKELIDQRVEESLKQA---AIWKETKDNLDRNAQAFSGGQQQR----ICIARALAVRPKVVLLDEPT 175 (251)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHc---CCCcchHHHhccChhhCCHHHHHH----HHHHHHHhcCCCEEEecCCC
Confidence 6665432100000 00 111222333333 331 113355678899999999 99999999999998 99
Q ss_pred CCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 367 SGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 367 sGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
+|||+.++ .+..+|+.+.++ .+++..+|.......+++.+.+++.|++++.++.+..
T Consensus 176 ~~LD~~~~~~l~~~l~~~~~~-~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 176 SALDPISSSEIEETLMELKHQ-YTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHcC-CeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999 999999998765 6788888888887777778888888999877665444
No 214
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.81 E-value=4.3e-20 Score=183.42 Aligned_cols=185 Identities=11% Similarity=0.117 Sum_probs=131.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|. ..++|+++...+++.++.+..+++...
T Consensus 26 ~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~----------~~i~~v~q~~~~~~~l~~~~~~~~~~~-- 93 (251)
T PRK09544 26 ELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK----------LRIGYVPQKLYLDTTLPLTVNRFLRLR-- 93 (251)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc----------cCEEEeccccccccccChhHHHHHhcc--
Confidence 477999999999999999999999999976 788877651 247788876656665543444433221
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
+ .. . ... +.+.+..+++.+ +....+..||+||+|| ++||+||+.+|+++ |++|||..++ .+..
T Consensus 94 ~--~~-~-~~~---~~~~l~~~gl~~-~~~~~~~~LSgGq~qr----v~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 161 (251)
T PRK09544 94 P--GT-K-KED---ILPALKRVQAGH-LIDAPMQKLSGGETQR----VLLARALLNRPQLLVLDEPTQGVDVNGQVALYD 161 (251)
T ss_pred c--cc-c-HHH---HHHHHHHcCChH-HHhCChhhCCHHHHHH----HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 1 00 0 112 233344445655 5566788999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhcC-CccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhc
Q 010472 379 ILKDFIDG-KLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLD 442 (509)
Q Consensus 379 lLkd~~~g-kl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (509)
+|+.+.+. +.+++...|+......+++.+.++++ .++..++.+.... .+.+.+.++
T Consensus 162 ~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~-------~~~~~~~~~ 218 (251)
T PRK09544 162 LIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL-------HPEFISMFG 218 (251)
T ss_pred HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC-------CHHHHHHhC
Confidence 99998653 56777788888887665556666665 5665544433221 255666664
No 215
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.81 E-value=7.3e-20 Score=181.38 Aligned_cols=191 Identities=10% Similarity=0.027 Sum_probs=131.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcC--Cc--ceEEeeCCccccccee-eec-CeEEEEeCCCccCCCCcccHHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQ--KR--TGVTSTPGKTKHFQTL-IIS-EKLVLCDCPGLVFPSFSISRYDMVA 299 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~--~~--~g~~~~~G~t~~~~~~-~~~-~~i~l~d~pg~~~p~~~~~~~e~v~ 299 (509)
++.+|+++||+|+||||||||+++|+|+ .. .|.+.+.|........ ... ..++++.+...+++.+ +..+++.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~--~~~~~l~ 106 (252)
T CHL00131 29 SINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGV--SNADFLR 106 (252)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccc--cHHHHHH
Confidence 4678999999999999999999999997 22 7999998865432111 111 2366777766666665 3333333
Q ss_pred hccCCcc---hh--hhHHHHHHHHHHhCCccchhhHhhccCCC-CCCccccCCCchHHHHHHHHHHcCCce----eCCCC
Q 010472 300 SGVLPID---RM--TEHRQAVQVVANRVPRHVIENVCKINLPK-PKPYESQSRPPLALELLRAYCASRGYV----ASSGL 369 (509)
Q Consensus 300 ~g~~~~~---~~--~~~~~~~~~i~~~l~~~~L~~~~~~~~~~-~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGL 369 (509)
.+..... .. .........+.+.+..+++...+....+. .||+||+|| +.||+||+.+|.++ ||+||
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qr----v~la~al~~~p~llllDEPt~~L 182 (252)
T CHL00131 107 LAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKR----NEILQMALLDSELAILDETDSGL 182 (252)
T ss_pred HhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHH----HHHHHHHHcCCCEEEEcCCcccC
Confidence 2211100 00 01111223344444555564224445565 599999999 99999999999998 99999
Q ss_pred CHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhcc-chhhHhhcccccccCCCCc
Q 010472 370 PDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVG-MEDTQASSLLELHESDASD 422 (509)
Q Consensus 370 D~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 422 (509)
|..++ .+..+|+++.+.+.+++..+|++.....+ ++.+.+++.|++++.++.+
T Consensus 183 D~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 237 (252)
T CHL00131 183 DIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAE 237 (252)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChh
Confidence 99999 99999999876455677788887777654 6788888888888766554
No 216
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=5.8e-20 Score=183.51 Aligned_cols=191 Identities=16% Similarity=0.085 Sum_probs=133.9
Q ss_pred ccCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCccccc---ceeeecCeEEEEeCCCccCCCCcccH
Q 010472 225 NVAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHF---QTLIISEKLVLCDCPGLVFPSFSISR 294 (509)
Q Consensus 225 ~~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~---~~~~~~~~i~l~d~pg~~~p~~~~~~ 294 (509)
-.+++|++++|+|+||+|||||+++|+|+.. .|.+.+.|..... .....+..++|+.+...+|+ + +.
T Consensus 29 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~--tv 105 (261)
T PRK14263 29 VPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFS-M--SI 105 (261)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCcccc-c--cH
Confidence 3578999999999999999999999999873 6899999875421 11123456888888766653 3 56
Q ss_pred HHHHHhccCCcchhhhHHHHHHHHHHhCCcc-chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCC
Q 010472 295 YDMVASGVLPIDRMTEHRQAVQVVANRVPRH-VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGL 369 (509)
Q Consensus 295 ~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~-~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGL 369 (509)
.+++..+.............+..+.+.+... .+.. .....+..||+||+|| +.||+||+.+|.++ |++||
T Consensus 106 ~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-~~~~~~~~LS~G~~qr----v~laral~~~p~llllDEPtsgL 180 (261)
T PRK14263 106 FDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-KLKVSGLSLSGGQQQR----LCIARAIATEPEVLLLDEPCSAL 180 (261)
T ss_pred HHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-hhhCCcccCCHHHHHH----HHHHHHHHcCCCEEEEeCCCccC
Confidence 6776554321100001112233333333321 1111 2235577899999999 99999999999998 99999
Q ss_pred CHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhc--------ccccccCCCCccc
Q 010472 370 PDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASS--------LLELHESDASDAE 424 (509)
Q Consensus 370 D~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 424 (509)
|+.++ .+..+|+++.++ ..++..+|.+.....+++.+++++ .|++++.++.+..
T Consensus 181 D~~~~~~l~~~l~~~~~~-~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~ 243 (261)
T PRK14263 181 DPIATRRVEELMVELKKD-YTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQI 243 (261)
T ss_pred CHHHHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHHH
Confidence 99999 999999999765 567788888887666666666664 7888877665443
No 217
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=4.8e-20 Score=182.97 Aligned_cols=191 Identities=17% Similarity=0.117 Sum_probs=136.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCcccccc---eeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHFQ---TLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~~---~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|...... .......++|+.+...+|+. ++.
T Consensus 28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~---tv~ 104 (253)
T PRK14261 28 SIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPK---SIY 104 (253)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcc---cHH
Confidence 478999999999999999999999999853 59999988754321 11234568888887666652 566
Q ss_pred HHHHhccCCcch--hhhHHHHHHHHHHhCCcc-chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCC
Q 010472 296 DMVASGVLPIDR--MTEHRQAVQVVANRVPRH-VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSG 368 (509)
Q Consensus 296 e~v~~g~~~~~~--~~~~~~~~~~i~~~l~~~-~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsG 368 (509)
+++..+...... .......+..+.+.+... .+.. +....+..||+||+|| +.||+||+.+|+++ |++|
T Consensus 105 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G~~qr----v~laral~~~p~lllLDEP~~g 179 (253)
T PRK14261 105 ENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKD-RLHDSALSLSGGQQQR----LCIARTLAVNPEVILMDEPCSA 179 (253)
T ss_pred HHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHH-HhhcChhhCCHHHHHH----HHHHHHHhcCCCEEEEeCCccc
Confidence 666544221110 001111222233333221 1222 3456678899999999 99999999999998 9999
Q ss_pred CCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcccc
Q 010472 369 LPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEE 425 (509)
Q Consensus 369 LD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (509)
||+.++ .+..+|+.+.++ .+++...|.+.....+++.+.+++.|++++.++.+...
T Consensus 180 LD~~~~~~l~~~l~~~~~~-~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 180 LDPIATAKIEDLIEDLKKE-YTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred CCHHHHHHHHHHHHHHhhC-ceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 999999 999999999775 67888888888887777788888889988776655443
No 218
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=9.8e-20 Score=181.50 Aligned_cols=190 Identities=16% Similarity=0.107 Sum_probs=135.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCccccc---ceeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHF---QTLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~---~~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
++.+|++++|+|+||+|||||+++|+|+.. .|.+.+.|..... .....+..++|+.+...+|+ . ++.
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~--tv~ 105 (259)
T PRK14260 29 DIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-M--SIY 105 (259)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC-c--cHH
Confidence 467899999999999999999999999865 5889999875421 11123456888888776766 4 566
Q ss_pred HHHHhccCCcchhh--hHHHHHHHHHHhCCcc-chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCC
Q 010472 296 DMVASGVLPIDRMT--EHRQAVQVVANRVPRH-VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSG 368 (509)
Q Consensus 296 e~v~~g~~~~~~~~--~~~~~~~~i~~~l~~~-~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsG 368 (509)
+++..+........ .....+..+.+.+... .+.. +....+..||+||+|| ++||+||+.+|+++ ||+|
T Consensus 106 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G~~qr----v~laral~~~p~lllLDEPt~~ 180 (259)
T PRK14260 106 ENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-KLNKSALGLSGGQQQR----LCIARALAIKPKVLLMDEPCSA 180 (259)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-HhcCCcccCCHHHHHH----HHHHHHHhcCCCEEEEcCCCcc
Confidence 66654421100000 1111222333333221 1223 4456678999999999 99999999999998 9999
Q ss_pred CCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhc-----ccccccCCCCccc
Q 010472 369 LPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASS-----LLELHESDASDAE 424 (509)
Q Consensus 369 LD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 424 (509)
||..++ .+..+|+.+.++ .+++..+|.+.....+++.+++++ .|++++.++.+..
T Consensus 181 LD~~~~~~l~~~l~~~~~~-~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~ 241 (259)
T PRK14260 181 LDPIATMKVEELIHSLRSE-LTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQI 241 (259)
T ss_pred CCHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHH
Confidence 999999 999999999776 677888899988877777777776 4888877665544
No 219
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.81 E-value=5.1e-20 Score=200.60 Aligned_cols=188 Identities=12% Similarity=0.121 Sum_probs=137.1
Q ss_pred ccCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce--eeecCeEEEEeCC---CccCCCCcccHHHH
Q 010472 225 NVAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT--LIISEKLVLCDCP---GLVFPSFSISRYDM 297 (509)
Q Consensus 225 ~~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~--~~~~~~i~l~d~p---g~~~p~~~~~~~e~ 297 (509)
-++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|....... ...+..++|++|. ..+++.+ ++.++
T Consensus 284 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~--tv~e~ 361 (510)
T PRK09700 284 FSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNF--SIAQN 361 (510)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCC--cHHHH
Confidence 3578999999999999999999999999976 799999886532111 1123468888885 2456666 55666
Q ss_pred HHhccCCc----c---hhhhHHHHHHHHHHhCCccchh-hHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----e
Q 010472 298 VASGVLPI----D---RMTEHRQAVQVVANRVPRHVIE-NVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----A 365 (509)
Q Consensus 298 v~~g~~~~----~---~~~~~~~~~~~i~~~l~~~~L~-~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----P 365 (509)
+..+.... . ...........+.+.+..+++. + +..+.+..|||||+|| +.||+||+.+|.+| |
T Consensus 362 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~LSgGq~qr----v~lAral~~~p~lLlLDEP 436 (510)
T PRK09700 362 MAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCH-SVNQNITELSGGNQQK----VLISKWLCCCPEVIIFDEP 436 (510)
T ss_pred hccccccccccccccccccChHHHHHHHHHHHHhcCCCCC-CccCccccCChHHHHH----HHHHHHHhcCCCEEEECCC
Confidence 55432110 0 0000111112334445555664 4 4567789999999999 99999999999998 9
Q ss_pred CCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCC
Q 010472 366 SSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESD 419 (509)
Q Consensus 366 tsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~ 419 (509)
|+|||+.++ .+.++|+.+++.+.+++..+|++.....+++.+.+++.|+++...
T Consensus 437 t~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~ 491 (510)
T PRK09700 437 TRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQIL 491 (510)
T ss_pred CCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEe
Confidence 999999999 999999998765667888899998887777788888888887543
No 220
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.81 E-value=5.5e-20 Score=199.97 Aligned_cols=187 Identities=11% Similarity=0.073 Sum_probs=139.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce--eeecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT--LIISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~--~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|....... ...+..++|+.|...+++.+ ++.+++..+
T Consensus 26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~--tv~~~l~~~ 103 (501)
T PRK11288 26 DCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEM--TVAENLYLG 103 (501)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCC--CHHHHHHhc
Confidence 467899999999999999999999999976 799999886542211 11245688888876677766 566676654
Q ss_pred cCCc-chhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-H
Q 010472 302 VLPI-DRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-A 375 (509)
Q Consensus 302 ~~~~-~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~ 375 (509)
.... ............+.+.+..++|.. +....+..|||||+|| ++||+||+.+|.++ ||+|||+.++ .
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qr----v~laral~~~p~lllLDEPt~~LD~~~~~~ 178 (501)
T PRK11288 104 QLPHKGGIVNRRLLNYEAREQLEHLGVDI-DPDTPLKYLSIGQRQM----VEIAKALARNARVIAFDEPTSSLSAREIEQ 178 (501)
T ss_pred ccccccCCCCHHHHHHHHHHHHHHcCCCC-CcCCchhhCCHHHHHH----HHHHHHHHhCCCEEEEcCCCCCCCHHHHHH
Confidence 3211 010011122233444455555654 4456788999999999 99999999999998 9999999999 9
Q ss_pred HHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCC
Q 010472 376 ARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESD 419 (509)
Q Consensus 376 ~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~ 419 (509)
+.++|+++.+.+.+++..+|++.....+++.+.+++.|+++...
T Consensus 179 l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~ 222 (501)
T PRK11288 179 LFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATF 222 (501)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999765667888889988887777788888888887543
No 221
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.1e-19 Score=183.65 Aligned_cols=188 Identities=17% Similarity=0.145 Sum_probs=132.5
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCccccc---ceeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHF---QTLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~---~~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
.+.+|++++|+|+||||||||+++|+|+.. .|.+.+.|..... .....+..++|+++...+|+. +..
T Consensus 61 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~---tv~ 137 (285)
T PRK14254 61 DIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK---SIY 137 (285)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcC---CHH
Confidence 578999999999999999999999999963 7999999875421 111234568888887666652 556
Q ss_pred HHHHhccCCcchhhhHHHHHHHHHHhCCcc-chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 296 DMVASGVLPIDRMTEHRQAVQVVANRVPRH-VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 296 e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~-~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
+++..+.............+..+.+.+... .+.. +....+..||+||+|| ++||+||+.+|.+| |++|||
T Consensus 138 enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-~~~~~~~~LSgGe~qr----v~LAraL~~~p~lLLLDEPts~LD 212 (285)
T PRK14254 138 DNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-QLDSSGLDLSGGQQQR----LCIARAIAPDPEVILMDEPASALD 212 (285)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-HHhCCcccCCHHHHHH----HHHHHHHHcCCCEEEEeCCCCCCC
Confidence 665443211000001112233333333321 1123 4456688999999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchh-hHhhcccccccCCCCc
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMED-TQASSLLELHESDASD 422 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 422 (509)
..++ .+..+|+++.++ ..++...|+......+++. ..+++.|++++.++.+
T Consensus 213 ~~~~~~l~~~L~~~~~~-~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~ 265 (285)
T PRK14254 213 PVATSKIEDLIEELAEE-YTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTD 265 (285)
T ss_pred HHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHH
Confidence 9999 999999999775 5788888888887665555 4566788887765543
No 222
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=9e-20 Score=182.67 Aligned_cols=191 Identities=15% Similarity=0.072 Sum_probs=136.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCcccccc---eeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHFQ---TLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~~---~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
++.+|+++||+|+||||||||+++|+|+.. .|.+.+.|...... ....+..++|+.+...+|+ . ++.
T Consensus 42 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~--tv~ 118 (267)
T PRK14237 42 QFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-K--SIY 118 (267)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-c--cHH
Confidence 467899999999999999999999999873 79999998764321 1123456888888766665 3 567
Q ss_pred HHHHhccCCcchh-h-hHHHHHHHHHHhCCcc-chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCC
Q 010472 296 DMVASGVLPIDRM-T-EHRQAVQVVANRVPRH-VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSG 368 (509)
Q Consensus 296 e~v~~g~~~~~~~-~-~~~~~~~~i~~~l~~~-~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsG 368 (509)
+++..+....... . .....+..+.+.+... .+.. +....+..||+|++|| ++||+||+.+|.++ |++|
T Consensus 119 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-~~~~~~~~LS~G~~qr----l~laral~~~p~lllLDEPt~~ 193 (267)
T PRK14237 119 ENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKD-DLHKSALTLSGGQQQR----LCIARAIAVKPDILLMDEPASA 193 (267)
T ss_pred HHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhh-hhcCCcccCCHHHHHH----HHHHHHHhcCCCEEEEeCCccc
Confidence 7776543211000 0 1111222333333321 1122 3456788999999999 99999999999998 9999
Q ss_pred CCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcccc
Q 010472 369 LPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEE 425 (509)
Q Consensus 369 LD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (509)
||+.++ .+..+|+++.++ ..++...|.......+++.+++++.|++++.++.+...
T Consensus 194 LD~~~~~~l~~~l~~~~~~-~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 194 LDPISTMQLEETMFELKKN-YTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred CCHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999 999999999765 56777778888876667788888888988877665443
No 223
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=6.8e-20 Score=183.96 Aligned_cols=188 Identities=15% Similarity=0.089 Sum_probs=134.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCccccc---ceeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHF---QTLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~---~~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
++.+|++++|+|+||+|||||+++|+|+.. .|.+.+.|..... ........++|+++...+|+ . +..
T Consensus 46 ~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~--tv~ 122 (271)
T PRK14238 46 DIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFP-K--SIY 122 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCcccc-c--cHH
Confidence 478999999999999999999999999863 5899998865421 11123456888888766665 2 566
Q ss_pred HHHHhccCCcchhhhH---HHHHHHHHHhCCc-cchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCC
Q 010472 296 DMVASGVLPIDRMTEH---RQAVQVVANRVPR-HVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASS 367 (509)
Q Consensus 296 e~v~~g~~~~~~~~~~---~~~~~~i~~~l~~-~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----Pts 367 (509)
+++..+.... ..... ...+..+.+.+.. .++.. +....+..||+|++|| +.||+||+.+|+++ |++
T Consensus 123 eni~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~l~~-~~~~~~~~LSgGe~qr----v~laraL~~~p~lllLDEPt~ 196 (271)
T PRK14238 123 DNVTYGPKIH-GIKDKKTLDEIVEKSLRGAAIWDELKD-RLHDNAYGLSGGQQQR----LCIARCLAIEPDVILMDEPTS 196 (271)
T ss_pred HHHHHHHHhc-CCCcHHHHHHHHHHHHHHcCCcchHHH-HHhcCcccCCHHHHHH----HHHHHHHHcCCCEEEEeCCCC
Confidence 6665442110 01011 1112222222221 12333 4456788999999999 99999999999998 999
Q ss_pred CCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 368 GLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 368 GLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
|||+.++ .+..+|+++.++ ..++...|++.....+++.+.++..|++++.++.+.
T Consensus 197 ~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~ 252 (271)
T PRK14238 197 ALDPISTLKVEELVQELKKD-YSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDK 252 (271)
T ss_pred cCCHHHHHHHHHHHHHHHcC-CEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999 999999999875 677888899888777777888888888887665543
No 224
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.80 E-value=1.3e-19 Score=173.75 Aligned_cols=166 Identities=8% Similarity=-0.019 Sum_probs=119.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|+++||+|+||+|||||+++|+|+.+ .|.+.+.|.............++|+.+...++|.+ ++.+++..+..
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~--tv~~~~~~~~~ 100 (200)
T PRK13540 23 HLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYL--TLRENCLYDIH 100 (200)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCC--CHHHHHHHHHh
Confidence 477999999999999999999999999976 89999998764322122345688888876666666 55666554421
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
.. . . .. .+.+.+..+++.. .....+..||+|++|| ++||+|++.+|+++ |++|||..++ .+..
T Consensus 101 ~~-~--~-~~---~~~~~l~~~~l~~-~~~~~~~~LS~G~~~r----v~laral~~~p~~lilDEP~~~LD~~~~~~l~~ 168 (200)
T PRK13540 101 FS-P--G-AV---GITELCRLFSLEH-LIDYPCGLLSSGQKRQ----VALLRLWMSKAKLWLLDEPLVALDELSLLTIIT 168 (200)
T ss_pred cC-c--c-hH---HHHHHHHHcCCch-hhhCChhhcCHHHHHH----HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHH
Confidence 11 0 1 11 2333333444544 3456677899999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhcCCccEEEcCCCCChhhccch
Q 010472 379 ILKDFIDGKLPHFEMPPGMSHEEVGME 405 (509)
Q Consensus 379 lLkd~~~gkl~~~~~pp~~~~~~~~~~ 405 (509)
+|+++.+.+..++...|......-||-
T Consensus 169 ~l~~~~~~~~tiii~sh~~~~~~~~d~ 195 (200)
T PRK13540 169 KIQEHRAKGGAVLLTSHQDLPLNKADY 195 (200)
T ss_pred HHHHHHHcCCEEEEEeCCchhccccch
Confidence 999986544456666666555554543
No 225
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.80 E-value=5.4e-20 Score=200.02 Aligned_cols=191 Identities=12% Similarity=0.086 Sum_probs=139.0
Q ss_pred ccCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce--eeecCeEEEEeCCC---ccCCCCcccHHHH
Q 010472 225 NVAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT--LIISEKLVLCDCPG---LVFPSFSISRYDM 297 (509)
Q Consensus 225 ~~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~--~~~~~~i~l~d~pg---~~~p~~~~~~~e~ 297 (509)
-++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|....... ...+..++|++|.. .+++.+ +..++
T Consensus 273 l~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~--tv~e~ 350 (501)
T PRK10762 273 FTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGM--SVKEN 350 (501)
T ss_pred EEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCC--cHHHH
Confidence 3678999999999999999999999999976 799999986542111 11234688888864 355655 55555
Q ss_pred HHhccCCc-ch---hhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCC
Q 010472 298 VASGVLPI-DR---MTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGL 369 (509)
Q Consensus 298 v~~g~~~~-~~---~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGL 369 (509)
+..+.... .. ..........+.+.+..+++...+..+.+..|||||+|| +.||+||+.+|.+| ||+||
T Consensus 351 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqr----v~lA~al~~~p~lllLDEPt~~L 426 (501)
T PRK10762 351 MSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQK----VAIARGLMTRPKVLILDEPTRGV 426 (501)
T ss_pred hhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHH----HHHHHHHhhCCCEEEEcCCCCCC
Confidence 54432110 00 001111123344455555663114567788999999999 99999999999998 99999
Q ss_pred CHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 370 PDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 370 D~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
|+.++ .+.++|+++...+..++..+|++...+.+++.+.++..|+++..++.
T Consensus 427 D~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~ 479 (501)
T PRK10762 427 DVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTR 479 (501)
T ss_pred CHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecc
Confidence 99999 99999999976566788888999998888888888888888765443
No 226
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.2e-19 Score=179.68 Aligned_cols=188 Identities=15% Similarity=0.080 Sum_probs=132.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCcccccc---eeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHFQ---TLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~~---~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
++.+|++++|+|+||+|||||+++|+|+.. .|.+.+.|...... .......++|+.+...+++ . ++.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~--tv~ 101 (250)
T PRK14262 25 KIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-M--SIY 101 (250)
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc-c--cHH
Confidence 467899999999999999999999999863 69999998654321 1123456888888766665 4 556
Q ss_pred HHHHhccCCcchh-h-hHHHHHHHHHHhCCccc-hhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCC
Q 010472 296 DMVASGVLPIDRM-T-EHRQAVQVVANRVPRHV-IENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSG 368 (509)
Q Consensus 296 e~v~~g~~~~~~~-~-~~~~~~~~i~~~l~~~~-L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsG 368 (509)
+++..+....... . .....+..+.+.+.... +.. +....+..||+||+|| ++||+||+.+|+++ |++|
T Consensus 102 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~Gq~qr----~~la~al~~~p~llllDEP~~~ 176 (250)
T PRK14262 102 DNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-ELNKPGTRLSGGQQQR----LCIARALAVEPEVILLDEPTSA 176 (250)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHH-HHhCChhhcCHHHHHH----HHHHHHHhCCCCEEEEeCCccc
Confidence 6665432111000 0 01112223333333211 122 4456778999999999 99999999999998 9999
Q ss_pred CCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 369 LPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 369 LD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
||..++ .+..+|+.+.++ .+++...|+......+++.+.+++.|+++..++.+
T Consensus 177 LD~~~~~~l~~~l~~~~~~-~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14262 177 LDPIATQRIEKLLEELSEN-YTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTR 230 (250)
T ss_pred cCHHHHHHHHHHHHHHhcC-cEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 999999 999999999775 57888888888766666777777888887665543
No 227
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=6e-20 Score=199.89 Aligned_cols=191 Identities=9% Similarity=0.109 Sum_probs=138.1
Q ss_pred ccCCCCcEEEEEecCCCCHhHHHHHHhcCCc---ceEEeeCCcccccce--eeecCeEEEEeCCC---ccCCCCcccHHH
Q 010472 225 NVAPKNVIVGFVGYPNVGKSSTINALVGQKR---TGVTSTPGKTKHFQT--LIISEKLVLCDCPG---LVFPSFSISRYD 296 (509)
Q Consensus 225 ~~i~~g~~vglvG~nGaGKSTLln~L~G~~~---~g~~~~~G~t~~~~~--~~~~~~i~l~d~pg---~~~p~~~~~~~e 296 (509)
-++.+|+++||+|+||||||||+++|+|+.+ .|.+.+.|....... ......++|+.|.. .+++.+ ++.+
T Consensus 283 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~--tv~e 360 (506)
T PRK13549 283 FSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVM--GVGK 360 (506)
T ss_pred eEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCC--CHHH
Confidence 3678999999999999999999999999964 799999886542111 11234578888863 345555 5566
Q ss_pred HHHhccCC-cch--hhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCC
Q 010472 297 MVASGVLP-IDR--MTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGL 369 (509)
Q Consensus 297 ~v~~g~~~-~~~--~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGL 369 (509)
++..+... ... ..........+.+.+..+++...+..+.+..|||||+|| +.||+||+.+|.+| ||+||
T Consensus 361 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqr----v~lA~al~~~p~lllLDEPt~~L 436 (506)
T PRK13549 361 NITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQK----AVLAKCLLLNPKILILDEPTRGI 436 (506)
T ss_pred HhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHH----HHHHHHHhhCCCEEEEcCCCCCc
Confidence 66543211 000 001111223344455555564214567788999999999 99999999999998 99999
Q ss_pred CHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 370 PDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 370 D~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
|+.++ .+.++|+++.+.+.+++..+|++.....+++.+.++..|+++..++.
T Consensus 437 D~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~ 489 (506)
T PRK13549 437 DVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLIN 489 (506)
T ss_pred CHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecc
Confidence 99999 99999999976567788999999998877777788888888765543
No 228
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.6e-19 Score=185.93 Aligned_cols=192 Identities=14% Similarity=0.119 Sum_probs=143.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCcccccce---eeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHFQT---LIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~~~---~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
++.+|+++||+|+||||||||+++|+|+.. .|.+.+.|....... ..++..++|+++...+|+ .+..
T Consensus 104 ~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~---~ti~ 180 (329)
T PRK14257 104 DIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE---MSIF 180 (329)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCC---CcHH
Confidence 578999999999999999999999999873 799999997653211 234567899988777664 3677
Q ss_pred HHHHhccCCcchhhhH---HHHHHHHHHhCCc-cchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCC
Q 010472 296 DMVASGVLPIDRMTEH---RQAVQVVANRVPR-HVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASS 367 (509)
Q Consensus 296 e~v~~g~~~~~~~~~~---~~~~~~i~~~l~~-~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----Pts 367 (509)
+++.++... ....+. ...+..+.+.+.. .++.. .....+..|||||+|| +.|||||+.+|.++ |++
T Consensus 181 eNi~~~~~~-~~~~~~~~~~~~~~~~l~~~~L~~~l~~-~~~~~~~~LSgGqkqR----l~LARAl~~~p~IlLLDEPts 254 (329)
T PRK14257 181 DNVAYGPRN-NGINDRKILEKIVEKSLKSAALWDEVKD-DLDKAGNALSGGQQQR----LCIARAIALEPEVLLMDEPTS 254 (329)
T ss_pred HHHHhHHHh-cCCChHHHHHHHHHHHHHHcCCcchhhh-hhhCCcccCCHHHHHH----HHHHHHHHhCCCEEEEeCCcc
Confidence 787654311 111111 1112333333331 12333 3356678899999999 99999999999998 999
Q ss_pred CCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCc
Q 010472 368 GLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVP 427 (509)
Q Consensus 368 GLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (509)
|||..+. .+.++|+.+.++ .+++..+|.+.....+++.+++++.|++++.++.+.....
T Consensus 255 ~LD~~~~~~i~~~i~~l~~~-~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~ 314 (329)
T PRK14257 255 ALDPIATAKIEELILELKKK-YSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIH 314 (329)
T ss_pred cCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999 999999998875 6788999999998887888899999999998887776543
No 229
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.80 E-value=5.2e-20 Score=222.03 Aligned_cols=186 Identities=11% Similarity=0.071 Sum_probs=144.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHh--c
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVAS--G 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~--g 301 (509)
.+.+|+++||+|+||||||||+++|+|... .|.+.+.|..........+..++|++|...+++.++ +.+++.. .
T Consensus 1961 ~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LT--v~E~L~l~a~ 2038 (2272)
T TIGR01257 1961 GVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLT--GREHLYLYAR 2038 (2272)
T ss_pred EEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCC--HHHHHHHHHH
Confidence 477999999999999999999999999976 899999997653222223457999999877788774 4444432 2
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
+.... . ......+.+.+..++|.+ +..+.+..||||++|| +.||+||+.+|.++ ||+|||+..+ .+
T Consensus 2039 l~g~~---~-~~~~~~v~~lLe~lgL~~-~~dk~~~~LSGGqKqR----LslA~ALi~~P~VLLLDEPTsGLDp~sr~~l 2109 (2272)
T TIGR01257 2039 LRGVP---A-EEIEKVANWSIQSLGLSL-YADRLAGTYSGGNKRK----LSTAIALIGCPPLVLLDEPTTGMDPQARRML 2109 (2272)
T ss_pred hcCCC---H-HHHHHHHHHHHHHcCCHH-HhcCChhhCCHHHHHH----HHHHHHHhcCCCEEEEECCCCCCCHHHHHHH
Confidence 21111 1 111223344555566776 7788899999999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 377 RIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 377 ~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
+++|+.+.+.+..++..+|++++.+..|++++++..|++...++.+
T Consensus 2110 ~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q 2155 (2272)
T TIGR01257 2110 WNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQ 2155 (2272)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999998765667888899999999988899999999887765543
No 230
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.80 E-value=8.6e-20 Score=177.43 Aligned_cols=181 Identities=9% Similarity=0.032 Sum_probs=128.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce----eeecCeEEEEeCCCccCCCCcccHHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT----LIISEKLVLCDCPGLVFPSFSISRYDMVA 299 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~----~~~~~~i~l~d~pg~~~p~~~~~~~e~v~ 299 (509)
.+.+|++++|+|+||+|||||+++|+|..+ .|.+.+.|....... ......++|+++...+|+.+ +..+++.
T Consensus 27 ~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--t~~~n~~ 104 (220)
T TIGR02982 27 EINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFL--TARQNVQ 104 (220)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCC--CHHHHHH
Confidence 467899999999999999999999999976 799999886542111 01245688888766666655 4455554
Q ss_pred hccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-
Q 010472 300 SGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR- 374 (509)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r- 374 (509)
.+....... ........+.+.+..++|.. +....+..||+||+|| +.||+||+.+|.++ |++|||..++
T Consensus 105 ~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~lS~G~~qr----v~laral~~~p~illlDEP~~~LD~~~~~ 178 (220)
T TIGR02982 105 MALELQPNL-SYQEARERARAMLEAVGLGD-HLDYYPHNLSGGQKQR----VAIARALVHRPKLVLADEPTAALDSKSGR 178 (220)
T ss_pred HHHHhccCC-CHHHHHHHHHHHHHHcCChh-hhhcChhhCCHHHHHH----HHHHHHHhcCCCEEEEeCCCCcCCHHHHH
Confidence 332111011 11122234445555556765 5567788999999999 99999999999998 9999999999
Q ss_pred HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhccccc
Q 010472 375 AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLEL 415 (509)
Q Consensus 375 ~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~ 415 (509)
.+..+|+++.+ .+.+++...|++...+ +++.++.+..|++
T Consensus 179 ~l~~~l~~~~~~~~~tii~~sh~~~~~~-~~d~v~~l~~g~~ 219 (220)
T TIGR02982 179 DVVELMQKLAREQGCTILIVTHDNRILD-VADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHh-hCCEEEEEECCEE
Confidence 99999999875 3566666667766555 4555555555543
No 231
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.80 E-value=6.4e-20 Score=204.24 Aligned_cols=192 Identities=11% Similarity=0.057 Sum_probs=140.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccc--------c---ce---eee-cCeEEEEeCCC--cc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKH--------F---QT---LII-SEKLVLCDCPG--LV 286 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~--------~---~~---~~~-~~~i~l~d~pg--~~ 286 (509)
++.+|+++||||+||||||||+++|+|++. .|.+.+.|.... . .. ... ...++++.|.. .+
T Consensus 38 ~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l 117 (623)
T PRK10261 38 SLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSL 117 (623)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhc
Confidence 467899999999999999999999999986 788887775321 0 00 011 23688888854 45
Q ss_pred CCCCcccHHHHHHhccCCcchhhhHHHHHHHHHHhCCccchhh--HhhccCCCCCCccccCCCchHHHHHHHHHHcCCce
Q 010472 287 FPSFSISRYDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIEN--VCKINLPKPKPYESQSRPPLALELLRAYCASRGYV 364 (509)
Q Consensus 287 ~p~~~~~~~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~--~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL 364 (509)
+|.+ ++.+++..++...... ........+.+.+..++|.. ......+..|||||+|| ++||+||+.+|.+|
T Consensus 118 ~~~~--tv~e~l~~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QR----v~iA~AL~~~P~lL 190 (623)
T PRK10261 118 NPVF--TVGEQIAESIRLHQGA-SREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQR----VMIAMALSCRPAVL 190 (623)
T ss_pred CCCC--CHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHH----HHHHHHHhCCCCEE
Confidence 6665 5666665543210001 11122334445555556632 24567789999999999 99999999999998
Q ss_pred ----eCCCCCHHHH-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 365 ----ASSGLPDETR-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 365 ----PtsGLD~~~r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
||++||+..+ .+..+|+++.+ .+.+++..+|++......++.+++++.|++++.++.+..
T Consensus 191 llDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~~g~~~~~ 256 (623)
T PRK10261 191 IADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQI 256 (623)
T ss_pred EEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecccCCHHHh
Confidence 9999999999 99999999974 467788999999998887888888888999886665444
No 232
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.80 E-value=5.3e-20 Score=200.09 Aligned_cols=190 Identities=14% Similarity=0.118 Sum_probs=139.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc--eeeecCeEEEEeCCC---ccCCCCcccHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ--TLIISEKLVLCDCPG---LVFPSFSISRYDMV 298 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~--~~~~~~~i~l~d~pg---~~~p~~~~~~~e~v 298 (509)
++.+|+++||+|+||||||||+++|+|+.+ .|.+.+.|...... ....+..++|++|.. .+|+.+ +..+++
T Consensus 275 ~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~--tv~e~l 352 (501)
T PRK11288 275 SVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH--SVADNI 352 (501)
T ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC--CHHHHh
Confidence 578999999999999999999999999976 79999988654211 112234678888853 356655 566666
Q ss_pred HhccCCcc---h-hhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 299 ASGVLPID---R-MTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 299 ~~g~~~~~---~-~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
..+..... . ..........+.+.+..+++...+..+.+..|||||+|| +.||+||+.+|.+| ||+|||
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr----l~la~al~~~p~lllLDEPt~~LD 428 (501)
T PRK11288 353 NISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQK----AILGRWLSEDMKVILLDEPTRGID 428 (501)
T ss_pred ccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHH----HHHHHHHccCCCEEEEcCCCCCCC
Confidence 54432110 0 001111112344455555563215567789999999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
..++ .+..+|+++.+.+..++..+|++...+.+++.+.+++.|+++..+..
T Consensus 429 ~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~ 480 (501)
T PRK11288 429 VGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAR 480 (501)
T ss_pred HhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcc
Confidence 9999 99999999987667899999999999888888888888887765444
No 233
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.80 E-value=1.5e-19 Score=175.09 Aligned_cols=170 Identities=12% Similarity=0.033 Sum_probs=123.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||+|||||+++|+|+.. .|.+.+.|...... .....++|+.+...+++.+ +..+++.....
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~--~~~~~i~~~~q~~~~~~~~--t~~e~l~~~~~ 108 (214)
T PRK13543 33 HVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG--DRSRFMAYLGHLPGLKADL--STLENLHFLCG 108 (214)
T ss_pred EECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch--hhhhceEEeecCcccccCC--cHHHHHHHHHH
Confidence 477899999999999999999999999976 79999998764321 1234577887765566665 44555433211
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
. ... .... .+.+.+..+++.. +....+..||+||+|| ++||+|++.+|.++ |++|||...+ .+..
T Consensus 109 ~-~~~-~~~~---~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----v~laral~~~p~llllDEPt~~LD~~~~~~l~~ 178 (214)
T PRK13543 109 L-HGR-RAKQ---MPGSALAIVGLAG-YEDTLVRQLSAGQKKR----LALARLWLSPAPLWLLDEPYANLDLEGITLVNR 178 (214)
T ss_pred h-cCC-cHHH---HHHHHHHHcCChh-hccCChhhCCHHHHHH----HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 0 000 1112 2233334445665 4567788999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhcCCccEEEcCCCCChhhccchhhHh
Q 010472 379 ILKDFIDGKLPHFEMPPGMSHEEVGMEDTQA 409 (509)
Q Consensus 379 lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~ 409 (509)
+|+.+.+.+.+++...|++.....+++.++.
T Consensus 179 ~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~ 209 (214)
T PRK13543 179 MISAHLRGGGAALVTTHGAYAAPPVRTRMLT 209 (214)
T ss_pred HHHHHHhCCCEEEEEecChhhhhhhcceEEE
Confidence 9998876556778888888877665555443
No 234
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.80 E-value=7.7e-20 Score=177.49 Aligned_cols=174 Identities=11% Similarity=0.061 Sum_probs=124.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++.+|++++|+|+||+|||||+++|+|..+ .|.+.+.|..... .....+..++|+++...+++ . +..+++..+.
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~--tv~e~l~~~~ 102 (220)
T cd03245 26 TIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-G--TLRDNITLGA 102 (220)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-c--hHHHHhhcCC
Confidence 467999999999999999999999999976 7999998865321 11112346888888766654 3 5666665432
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchhhHhhcc-----------CCCCCCccccCCCchHHHHHHHHHHcCCce----eCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIENVCKIN-----------LPKPKPYESQSRPPLALELLRAYCASRGYV----ASS 367 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~-----------~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----Pts 367 (509)
... . ...+..+.+. +++.+ +... .+..||+||+|| +.||+|++.+|+++ ||+
T Consensus 103 ~~~----~-~~~~~~~l~~---~~l~~-~~~~~~~~~~~~~~~~~~~LSgG~~qr----l~la~al~~~p~llllDEPt~ 169 (220)
T cd03245 103 PLA----D-DERILRAAEL---AGVTD-FVNKHPNGLDLQIGERGRGLSGGQRQA----VALARALLNDPPILLLDEPTS 169 (220)
T ss_pred CCC----C-HHHHHHHHHH---cCcHH-HHHhccccccceecCCCccCCHHHHHH----HHHHHHHhcCCCEEEEeCccc
Confidence 211 1 1112223333 33443 2222 235899999999 99999999999998 999
Q ss_pred CCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhccccccc
Q 010472 368 GLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHE 417 (509)
Q Consensus 368 GLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~ 417 (509)
|||+.++ .+.++|+++.++ .+++...|++...++| +.+..++.|++++
T Consensus 170 ~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~-d~v~~l~~g~i~~ 218 (220)
T cd03245 170 AMDMNSEERLKERLRQLLGD-KTLIIITHRPSLLDLV-DRIIVMDSGRIVA 218 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHHHHhC-CEEEEEeCCeEee
Confidence 9999999 999999999776 6677777887777654 5666666676654
No 235
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.80 E-value=1.8e-19 Score=179.11 Aligned_cols=188 Identities=14% Similarity=0.085 Sum_probs=131.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc------ceEEeeCCcccccceeeecCeEEEEeCCCc--cCCCCcccHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR------TGVTSTPGKTKHFQTLIISEKLVLCDCPGL--VFPSFSISRYDM 297 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~------~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~--~~p~~~~~~~e~ 297 (509)
.+.+|++++|+|+||||||||+++|+|+.. .|.+.+.|....... .....++|+.+... +.|.+ +..++
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~-~~~~~i~~v~q~~~~~~~~~~--~~~~~ 101 (254)
T PRK10418 25 TLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCA-LRGRKIATIMQNPRSAFNPLH--TMHTH 101 (254)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccc-cccceEEEEecCCccccCccc--cHHHH
Confidence 477999999999999999999999999975 488999887643211 12346888888642 33333 33333
Q ss_pred HHhccCCcchhhhHHHHHHHHHHhCCccchhhH--hhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCH
Q 010472 298 VASGVLPIDRMTEHRQAVQVVANRVPRHVIENV--CKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPD 371 (509)
Q Consensus 298 v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~--~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~ 371 (509)
+........ ..... ..+.+.+..++|... +....+..||+||+|| +.||+||+.+|.+| |++|||.
T Consensus 102 ~~~~~~~~~-~~~~~---~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qr----v~laral~~~p~lLlLDEPt~~LD~ 173 (254)
T PRK10418 102 ARETCLALG-KPADD---ATLTAALEAVGLENAARVLKLYPFEMSGGMLQR----MMIALALLCEAPFIIADEPTTDLDV 173 (254)
T ss_pred HHHHHHHcC-CChHH---HHHHHHHHHcCCCChhhhhhcCCcccCHHHHHH----HHHHHHHhcCCCEEEEeCCCcccCH
Confidence 322110000 00111 223333333444331 3456678999999999 99999999999998 9999999
Q ss_pred HHH-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 372 ETR-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 372 ~~r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
.++ .+..+|+.+.+ .+..++..+|.+.....+++.+.+++.|++++.++.+..
T Consensus 174 ~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 228 (254)
T PRK10418 174 VAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETL 228 (254)
T ss_pred HHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999 99999999865 467788888888887766677888888888876655443
No 236
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=1.1e-19 Score=169.15 Aligned_cols=175 Identities=14% Similarity=0.090 Sum_probs=137.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|+.+.++||+|||||||+|+++|... .|.+.++|.+..... ..-++++|...++|-+ ++.+|+.+|+.
T Consensus 27 ~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPg----aergvVFQ~~~LlPWl--~~~dNvafgL~ 100 (259)
T COG4525 27 TIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG----AERGVVFQNEALLPWL--NVIDNVAFGLQ 100 (259)
T ss_pred eecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCC----ccceeEeccCccchhh--HHHHHHHHHHH
Confidence 467899999999999999999999999987 788888887654321 2245677766777877 66788888764
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
... + ........+.+.+..++|.+ +..+++-.|||||+|| +.|||||+.+|.+| |+++||..+| .+..
T Consensus 101 l~G-i-~k~~R~~~a~q~l~~VgL~~-~~~~~i~qLSGGmrQR----vGiARALa~eP~~LlLDEPfgAlDa~tRe~mQe 173 (259)
T COG4525 101 LRG-I-EKAQRREIAHQMLALVGLEG-AEHKYIWQLSGGMRQR----VGIARALAVEPQLLLLDEPFGALDALTREQMQE 173 (259)
T ss_pred hcC-C-CHHHHHHHHHHHHHHhCccc-ccccceEeecchHHHH----HHHHHHhhcCcceEeecCchhhHHHHHHHHHHH
Confidence 321 1 22334445556666677877 7778888999999999 99999999999998 9999999999 8888
Q ss_pred HHHHh-hcCCccEEEcCCCCChhhccchhhHhhccc
Q 010472 379 ILKDF-IDGKLPHFEMPPGMSHEEVGMEDTQASSLL 413 (509)
Q Consensus 379 lLkd~-~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~ 413 (509)
+|-++ ...+..++..+|+..++-+......++.++
T Consensus 174 lLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~ 209 (259)
T COG4525 174 LLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPG 209 (259)
T ss_pred HHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCC
Confidence 77764 556677888899999999988877777664
No 237
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=9.2e-20 Score=181.66 Aligned_cols=192 Identities=16% Similarity=0.125 Sum_probs=135.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcc------cc-cceeeecCeEEEEeCCCccCCCCcccHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKT------KH-FQTLIISEKLVLCDCPGLVFPSFSISRYD 296 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t------~~-~~~~~~~~~i~l~d~pg~~~p~~~~~~~e 296 (509)
.+.+|++++|+|+||+|||||+++|+|... .|.+.+.|.. .. ......+..++|+.+...+|+.+ +..+
T Consensus 32 ~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~--tv~~ 109 (257)
T PRK14246 32 KIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHL--SIYD 109 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCC--cHHH
Confidence 467899999999999999999999999976 5655555532 11 11112345688888877777766 4556
Q ss_pred HHHhccCCcchhhhHHHHHHHHHHhCCccchhh---HhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCC
Q 010472 297 MVASGVLPIDRMTEHRQAVQVVANRVPRHVIEN---VCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGL 369 (509)
Q Consensus 297 ~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~---~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGL 369 (509)
++..+..... ..........+.+.+..+++.. ......+..||+|++|| ++||+||+.+|.++ ||+||
T Consensus 110 nl~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr----l~laral~~~P~llllDEPt~~L 184 (257)
T PRK14246 110 NIAYPLKSHG-IKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQR----LTIARALALKPKVLLMDEPTSMI 184 (257)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHH----HHHHHHHHcCCCEEEEcCCCccC
Confidence 6554322111 1111111122333333333421 13456678899999999 99999999999998 99999
Q ss_pred CHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcccc
Q 010472 370 PDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEE 425 (509)
Q Consensus 370 D~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (509)
|..++ .+..+|..+.++ ..++...|.......+++.+.++..|++++.++.+...
T Consensus 185 D~~~~~~l~~~l~~~~~~-~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 185 DIVNSQAIEKLITELKNE-IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred CHHHHHHHHHHHHHHhcC-cEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999 999999998765 67888889988887777888888888988766554443
No 238
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=9.4e-20 Score=178.53 Aligned_cols=184 Identities=15% Similarity=0.107 Sum_probs=128.5
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++.+|++++|+|+||+|||||+++|+|+.+ .|.+.+.|..... .....+..++++++...+++ . +..+++..+.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~--tv~enl~~~~ 100 (234)
T cd03251 24 DIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-D--TVAENIAYGR 100 (234)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-c--cHHHHhhccC
Confidence 477999999999999999999999999976 7999998865421 11123456888888766664 3 6677776543
Q ss_pred CCcchhhhHHHHHH--HHHHhCCcc--chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 303 LPIDRMTEHRQAVQ--VVANRVPRH--VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 303 ~~~~~~~~~~~~~~--~i~~~l~~~--~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
.... ......... .+.+.+..+ ++.. .....+..||+||+|| +.||+||+.+|.++ |++|||+.++
T Consensus 101 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~LS~G~~qr----v~la~al~~~p~lllLDEP~~~LD~~~~ 174 (234)
T cd03251 101 PGAT-REEVEEAARAANAHEFIMELPEGYDT-VIGERGVKLSGGQRQR----IAIARALLKDPPILILDEATSALDTESE 174 (234)
T ss_pred CCCC-HHHHHHHHHHcCcHHHHHhcccCcce-eeccCCCcCCHHHHHH----HHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 2211 001001000 111222111 2332 2345577899999999 99999999999998 9999999999
Q ss_pred -HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCC
Q 010472 375 -AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDA 420 (509)
Q Consensus 375 -~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (509)
.+.++|+.+.+| ..++...|.+...+. ++.+.++..|++++.++
T Consensus 175 ~~l~~~l~~~~~~-~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~~ 219 (234)
T cd03251 175 RLVQAALERLMKN-RTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGT 219 (234)
T ss_pred HHHHHHHHHhcCC-CEEEEEecCHHHHhh-CCEEEEecCCeEeeeCC
Confidence 999999999775 456666788777776 66777777788875443
No 239
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.80 E-value=7.8e-20 Score=198.68 Aligned_cols=188 Identities=11% Similarity=0.110 Sum_probs=137.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc---ceEEeeCCcccccc--eeeecCeEEEEeCCC---ccCCCCcccHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR---TGVTSTPGKTKHFQ--TLIISEKLVLCDCPG---LVFPSFSISRYDM 297 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~---~g~~~~~G~t~~~~--~~~~~~~i~l~d~pg---~~~p~~~~~~~e~ 297 (509)
++.+|+++||+|+||||||||+++|+|+.+ .|.+.+.|...... ....+..++|++|.. .++|.+ ++.++
T Consensus 282 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~--tv~~~ 359 (500)
T TIGR02633 282 SLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPIL--GVGKN 359 (500)
T ss_pred EEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCC--CHHHH
Confidence 578999999999999999999999999974 69999988654211 112345688888863 356665 55566
Q ss_pred HHhccCC-cch--hhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 298 VASGVLP-IDR--MTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 298 v~~g~~~-~~~--~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
+..+... ... ..........+.+.+..+++...+..+.+..|||||+|| +.||+||+.+|.+| ||+|||
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr----v~la~al~~~p~lllLDEPt~~LD 435 (500)
T TIGR02633 360 ITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQK----AVLAKMLLTNPRVLILDEPTRGVD 435 (500)
T ss_pred hcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHH----HHHHHHHhhCCCEEEEcCCCCCcC
Confidence 5543211 000 001111122344444445564324467788999999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCC
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESD 419 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~ 419 (509)
+.++ .+.++|+.+.+.+..++..+|++.....+++.+.+++.|+++...
T Consensus 436 ~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~ 485 (500)
T TIGR02633 436 VGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDF 485 (500)
T ss_pred HhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEE
Confidence 9999 999999999766677999999999988877788888888887544
No 240
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.80 E-value=1.8e-19 Score=175.46 Aligned_cols=172 Identities=15% Similarity=0.088 Sum_probs=120.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCC--ccccccee------e-ecCeEEEEeCCCccCCCCcccH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPG--KTKHFQTL------I-ISEKLVLCDCPGLVFPSFSISR 294 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G--~t~~~~~~------~-~~~~i~l~d~pg~~~p~~~~~~ 294 (509)
++.+|++++|+|+||+|||||+++|+|+.. .|.+.+.| ........ . ....++|+++...+++.+ ++
T Consensus 30 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--tv 107 (224)
T TIGR02324 30 TVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRV--SA 107 (224)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCc--cH
Confidence 467899999999999999999999999976 78888873 21121110 0 124578888876677766 45
Q ss_pred HHHHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 295 YDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 295 ~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
.+++........ . ......+.+.+.+..+++...+....+..||+||+|| ++||+||+.+|.++ |++|||
T Consensus 108 ~e~l~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qr----l~laral~~~p~llllDEPt~~LD 181 (224)
T TIGR02324 108 LEVVAEPLLERG-V-PREAARARARELLARLNIPERLWHLPPATFSGGEQQR----VNIARGFIADYPILLLDEPTASLD 181 (224)
T ss_pred HHHHHHHHHHcC-C-CHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHH----HHHHHHHhcCCCEEEEcCCcccCC
Confidence 555543221100 1 1111122334444445565434456688999999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhh-ccch
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEE-VGME 405 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~-~~~~ 405 (509)
+.++ .+..+|+.+.+.+..++...|+..... +|++
T Consensus 182 ~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~ 218 (224)
T TIGR02324 182 AANRQVVVELIAEAKARGAALIGIFHDEEVRELVADR 218 (224)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcce
Confidence 9999 999999998765567778888877665 4443
No 241
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.6e-19 Score=179.78 Aligned_cols=188 Identities=16% Similarity=0.121 Sum_probs=134.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCcccccc---eeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHFQ---TLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~~---~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
.+.+|++++|+|+||+|||||+++|+|+.. .|.+.+.|...... ....+..++|+.+...+|+. +..
T Consensus 47 ~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~---tv~ 123 (272)
T PRK14236 47 RIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK---SIY 123 (272)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcc---cHH
Confidence 477999999999999999999999999953 79999988754321 11234568888887666653 556
Q ss_pred HHHHhccCCcch-hhh-HHHHHHHHHHhCCccc-hhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCC
Q 010472 296 DMVASGVLPIDR-MTE-HRQAVQVVANRVPRHV-IENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSG 368 (509)
Q Consensus 296 e~v~~g~~~~~~-~~~-~~~~~~~i~~~l~~~~-L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsG 368 (509)
+++..+...... ... ....+..+.+.+.... +.. .....+..||+||+|| ++||+||+.+|.++ |++|
T Consensus 124 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~Gq~qr----v~laral~~~p~lllLDEPt~g 198 (272)
T PRK14236 124 ENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD-RLHENAFGLSGGQQQR----LVIARAIAIEPEVLLLDEPTSA 198 (272)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHH-HhhCCcccCCHHHHHH----HHHHHHHHCCCCEEEEeCCccc
Confidence 666543210000 000 1122333333333211 112 3456678899999999 99999999999998 9999
Q ss_pred CCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 369 LPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 369 LD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
||+.++ .+..+|+.+.++ ..++..+|.......+++.+++++.|++++.++.+
T Consensus 199 LD~~~~~~l~~~L~~~~~~-~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 199 LDPISTLKIEELITELKSK-YTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred CCHHHHHHHHHHHHHHHhC-CeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 999999 999999999775 56777888888877777788888888888765544
No 242
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.79 E-value=1e-19 Score=178.75 Aligned_cols=185 Identities=15% Similarity=0.090 Sum_probs=128.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc-eeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ-TLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~-~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|...... ....+..++|+++...+|+ . ++.+++..+.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~--tv~~nl~~~~ 100 (237)
T cd03252 24 RIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-R--SIRDNIALAD 100 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-c--hHHHHhhccC
Confidence 467899999999999999999999999976 79999998654221 1123456888888766553 3 5666665533
Q ss_pred CCcchhhhHHHHHH--HHHHhCCcc--chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 303 LPIDRMTEHRQAVQ--VVANRVPRH--VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 303 ~~~~~~~~~~~~~~--~i~~~l~~~--~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
.... ......... .+.+.+..+ ++.. .....+..||+||+|| +.||+||+.+|+++ |++|||+.++
T Consensus 101 ~~~~-~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~LSgG~~qr----v~laral~~~p~llllDEP~~~LD~~~~ 174 (237)
T cd03252 101 PGMS-MERVIEAAKLAGAHDFISELPEGYDT-IVGEQGAGLSGGQRQR----IAIARALIHNPRILIFDEATSALDYESE 174 (237)
T ss_pred CCCC-HHHHHHHHHHcCcHHHHHhCcccccc-hhhcCCCcCCHHHHHH----HHHHHHHhhCCCEEEEeCCcccCCHHHH
Confidence 2110 000000000 011111111 2222 2345678899999999 99999999999998 9999999999
Q ss_pred -HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 375 -AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 375 -~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
.+..+|+.+.+| ..++...|++...+. ++.+.++..|++++.++.
T Consensus 175 ~~l~~~l~~~~~~-~tiii~sH~~~~~~~-~d~v~~l~~G~i~~~~~~ 220 (237)
T cd03252 175 HAIMRNMHDICAG-RTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGSH 220 (237)
T ss_pred HHHHHHHHHhcCC-CEEEEEeCCHHHHHh-CCEEEEEECCEEEEEcCH
Confidence 999999999765 556777788877766 567778888888765543
No 243
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.79 E-value=1.2e-19 Score=177.12 Aligned_cols=182 Identities=11% Similarity=0.114 Sum_probs=125.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|..... ........++|+.+...+|+ . +..+++..+.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~--tv~enl~~~~ 105 (225)
T PRK10247 29 SLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-D--TVYDNLIFPW 105 (225)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEeccccccc-c--cHHHHHHhHH
Confidence 477999999999999999999999999876 8999998864321 11112346788888766654 2 5666654432
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHH
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AAR 377 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~ 377 (509)
..... .... ..+.+.+..+++...+....+..||+|++|| +.||+||+.+|.++ ||+|||+.++ .+.
T Consensus 106 ~~~~~-~~~~---~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qr----v~laral~~~p~llllDEPt~~LD~~~~~~l~ 177 (225)
T PRK10247 106 QIRNQ-QPDP---AIFLDDLERFALPDTILTKNIAELSGGEKQR----ISLIRNLQFMPKVLLLDEITSALDESNKHNVN 177 (225)
T ss_pred hhcCC-ChHH---HHHHHHHHHcCCChHHhcCCcccCCHHHHHH----HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 11000 1111 2233444444564324567788999999999 99999999999998 9999999999 999
Q ss_pred HHHHHhhc-CCccEEEcCCCCChhhccchhhHh-hcccccccC
Q 010472 378 IILKDFID-GKLPHFEMPPGMSHEEVGMEDTQA-SSLLELHES 418 (509)
Q Consensus 378 ~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~-~~~~~~~~~ 418 (509)
.+|+++.+ .+..++...|.....++|++...+ ..+|++.++
T Consensus 178 ~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~ 220 (225)
T PRK10247 178 EIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEA 220 (225)
T ss_pred HHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhh
Confidence 99999864 345566666777777665544444 235555443
No 244
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.79 E-value=1.4e-19 Score=176.70 Aligned_cols=174 Identities=10% Similarity=0.076 Sum_probs=123.5
Q ss_pred ccCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 225 NVAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 225 ~~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
-++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|..... ......++|.+ ++.+++..+.
T Consensus 43 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~-----------~~~~~~~~~~~--tv~enl~~~~ 109 (224)
T cd03220 43 FEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL-----------LGLGGGFNPEL--TGRENIYLNG 109 (224)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh-----------hcccccCCCCC--cHHHHHHHHH
Confidence 3578999999999999999999999999976 7888888864321 01111123444 5555554332
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHH
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AAR 377 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~ 377 (509)
.... . ........+.+.+..+++.+ +....+..||+||+|| ++||+|++.+|.++ |++|||+.++ .+.
T Consensus 110 ~~~~-~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qr----v~laral~~~p~llllDEP~~gLD~~~~~~~~ 182 (224)
T cd03220 110 RLLG-L-SRKEIDEKIDEIIEFSELGD-FIDLPVKTYSSGMKAR----LAFAIATALEPDILLIDEVLAVGDAAFQEKCQ 182 (224)
T ss_pred HHcC-C-CHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHH----HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 1000 0 11111122333344445655 4556778999999999 99999999999998 9999999999 999
Q ss_pred HHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccC
Q 010472 378 IILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHES 418 (509)
Q Consensus 378 ~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~ 418 (509)
++|+++.+.+.+++...|+......+++.+.++..|+++..
T Consensus 183 ~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 223 (224)
T cd03220 183 RRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFD 223 (224)
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence 99999876556788888888887766677777787877543
No 245
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.4e-19 Score=179.29 Aligned_cols=204 Identities=15% Similarity=0.148 Sum_probs=141.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCccccc-----ceeeecCeEEEEeCCCccCCCCccc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHF-----QTLIISEKLVLCDCPGLVFPSFSIS 293 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~-----~~~~~~~~i~l~d~pg~~~p~~~~~ 293 (509)
++.+|++++|+|+||+|||||+++|+|+.. .|.+.+.|..... ........++|+.+...+|+. +
T Consensus 38 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~---t 114 (265)
T PRK14252 38 MVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK---S 114 (265)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcc---h
Confidence 477999999999999999999999999863 6788888754321 111234568888887766652 4
Q ss_pred HHHHHHhccC--CcchhhhHHHHHHHHHHhCCcc-chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eC
Q 010472 294 RYDMVASGVL--PIDRMTEHRQAVQVVANRVPRH-VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----AS 366 (509)
Q Consensus 294 ~~e~v~~g~~--~~~~~~~~~~~~~~i~~~l~~~-~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----Pt 366 (509)
..+++..+.. .........+.+..+.+.+... ++.. .....+..||+|++|| +.||+||+.+|+++ |+
T Consensus 115 v~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G~~qr----v~laral~~~p~llllDEPt 189 (265)
T PRK14252 115 IFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKD-RLGDLAFNLSGGQQQR----LCIARALATDPEILLFDEPT 189 (265)
T ss_pred HHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhH-HHhCCcccCCHHHHHH----HHHHHHHHcCCCEEEEeCCC
Confidence 5666654321 1100001112233333333321 2233 3456678899999999 99999999999998 99
Q ss_pred CCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhc
Q 010472 367 SGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLD 442 (509)
Q Consensus 367 sGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (509)
+|||..++ .+..+|+.+..+ ..++..+|.+.....+++.+++++.|++++.++.+....... .+..++.+.
T Consensus 190 ~gLD~~~~~~l~~~l~~l~~~-~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~----~~~~~~~~~ 261 (265)
T PRK14252 190 SALDPIATASIEELISDLKNK-VTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFIKPK----NKQTEDYIT 261 (265)
T ss_pred ccCCHHHHHHHHHHHHHHHhC-CEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCC----CHHHHHHHh
Confidence 99999999 999999999775 677888889888877777888888899888766655433211 245555554
No 246
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=2.1e-19 Score=168.45 Aligned_cols=144 Identities=15% Similarity=0.162 Sum_probs=111.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||+|||||+++|+|..+ .|.+.+.|..........+..++|+++...+|+.+ +..+++.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~--tv~~~~~---- 95 (173)
T cd03230 22 TVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENL--TVRENLK---- 95 (173)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCC--cHHHHhh----
Confidence 467899999999999999999999999976 78898888654221122345678887765555544 2222211
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
||+||+|| +.||+||+.+|+++ |++|||..++ .+.+
T Consensus 96 -----------------------------------LS~G~~qr----v~laral~~~p~illlDEPt~~LD~~~~~~l~~ 136 (173)
T cd03230 96 -----------------------------------LSGGMKQR----LALAQALLHDPELLILDEPTSGLDPESRREFWE 136 (173)
T ss_pred -----------------------------------cCHHHHHH----HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 99999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhcCCccEEEcCCCCChhhccchhhHhhcccc
Q 010472 379 ILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLE 414 (509)
Q Consensus 379 lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~ 414 (509)
+|+++.+.+..++...|+......+++.+..++.|.
T Consensus 137 ~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~ 172 (173)
T cd03230 137 LLRELKKEGKTILLSSHILEEAERLCDRVAILNNGR 172 (173)
T ss_pred HHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCC
Confidence 999997545667777788887776666666655554
No 247
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.79 E-value=1e-19 Score=219.60 Aligned_cols=186 Identities=16% Similarity=0.142 Sum_probs=143.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
.+.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|..........+..++++.|...+++.+ ++.+++.....
T Consensus 952 ~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~L--TV~E~L~f~~~ 1029 (2272)
T TIGR01257 952 TFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHL--TVAEHILFYAQ 1029 (2272)
T ss_pred EEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCC--CHHHHHHHHHH
Confidence 578999999999999999999999999976 89999999765332223456799999988888887 45555543221
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
.. .. ......+.+.+.+..++|.+ +....+..|||||+|| ++||+||+.+|+++ ||+|||+.++ .+++
T Consensus 1030 lk-g~-~~~~~~~~v~~lL~~vgL~~-~~~~~~~~LSGGqKQR----LsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~ 1102 (2272)
T TIGR01257 1030 LK-GR-SWEEAQLEMEAMLEDTGLHH-KRNEEAQDLSGGMQRK----LSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWD 1102 (2272)
T ss_pred hc-CC-CHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHH----HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHH
Confidence 10 01 11112233445555566766 5677889999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 379 ILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 379 lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
+|+++++| .+++..+|++++++..+++++++..|++...++.
T Consensus 1103 lL~~l~~g-~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~ 1144 (2272)
T TIGR01257 1103 LLLKYRSG-RTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTP 1144 (2272)
T ss_pred HHHHHhCC-CEEEEEECCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 99999765 4677788999999988888889988888665443
No 248
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.79 E-value=2.2e-19 Score=179.66 Aligned_cols=176 Identities=11% Similarity=0.067 Sum_probs=125.5
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||+|||||+++|+|+.+ .|.+.+.|.. .++.+...+++.+ +..+++..+..
T Consensus 46 ~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~------------~~~~~~~~~~~~~--tv~enl~~~~~ 111 (264)
T PRK13546 46 KAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEV------------SVIAISAGLSGQL--TGIENIEFKML 111 (264)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEE------------eEEecccCCCCCC--cHHHHHHHHHH
Confidence 578999999999999999999999999976 7888877741 1222222233444 44555543211
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
... . ........+...+...++.. +....+..||+||+|| ++||+|++.+|.++ |++|||+..+ .+..
T Consensus 112 ~~~-~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Gq~qr----v~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~ 184 (264)
T PRK13546 112 CMG-F-KRKEIKAMTPKIIEFSELGE-FIYQPVKKYSSGMRAK----LGFSINITVNPDILVIDEALSVGDQTFAQKCLD 184 (264)
T ss_pred HcC-C-CHHHHHHHHHHHHHHcCCch-hhcCCcccCCHHHHHH----HHHHHHHhhCCCEEEEeCccccCCHHHHHHHHH
Confidence 100 0 11111222222333334555 4556788999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 379 ILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 379 lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
+|.++.+...+++..+|.......+++.+++++.|++++.++.+
T Consensus 185 ~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 228 (264)
T PRK13546 185 KIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELD 228 (264)
T ss_pred HHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHH
Confidence 99999765667888888888877777788888889988765543
No 249
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.79 E-value=2.4e-19 Score=177.60 Aligned_cols=167 Identities=13% Similarity=0.026 Sum_probs=122.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
.+.+|++++|+|+||||||||+++|+|+.. .|.+.+.|. .+.++++....++.. ++.+++.....
T Consensus 21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-----------~i~~~~q~~~~~~~~--tv~e~l~~~~~ 87 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-----------TVSYKPQYIKADYEG--TVRDLLSSITK 87 (246)
T ss_pred CcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-----------eEEEecccccCCCCC--CHHHHHHHHhh
Confidence 467899999999999999999999999976 688877763 456666644333333 55555533211
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
... ..... +.+.+..+++.. +....+..|||||+|| ++||+||+.+|.++ ||++||+..+ .+..
T Consensus 88 ~~~---~~~~~---~~~~l~~l~l~~-~~~~~~~~LSgGe~qr----v~iaraL~~~p~llllDEPt~~LD~~~~~~l~~ 156 (246)
T cd03237 88 DFY---THPYF---KTEIAKPLQIEQ-ILDREVPELSGGELQR----VAIAACLSKDADIYLLDEPSAYLDVEQRLMASK 156 (246)
T ss_pred hcc---ccHHH---HHHHHHHcCCHH-HhhCChhhCCHHHHHH----HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 100 00111 223344455665 5567788999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccc
Q 010472 379 ILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELH 416 (509)
Q Consensus 379 lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~ 416 (509)
+|+.+.. .+..++..+|++.....+++.+.+++++..+
T Consensus 157 ~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~ 195 (246)
T cd03237 157 VIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSV 195 (246)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCee
Confidence 9999865 4577888889988888777777777665443
No 250
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.79 E-value=1.8e-19 Score=193.04 Aligned_cols=175 Identities=14% Similarity=0.135 Sum_probs=126.5
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
.+.+|+++||+|+||||||||+++|+|+.. .|.+.+.|.... +.+ .++ +++.+ +..+++.....
T Consensus 46 sI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~---------i~~--~~~-l~~~l--TV~EnL~l~~~ 111 (549)
T PRK13545 46 EVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL---------IAI--SSG-LNGQL--TGIENIELKGL 111 (549)
T ss_pred EEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeee---------EEe--ccc-cCCCC--cHHHHHHhhhh
Confidence 467899999999999999999999999986 788888885310 111 122 23444 55555543221
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
... . ........+.+.+..+++.. +....+..|||||+|| ++||+||+.+|.+| |++|||+..+ .+..
T Consensus 112 ~~~-~-~~~e~~e~i~elLe~lgL~~-~ld~~~~~LSGGQrQR----VaLArAL~~~P~LLLLDEPTsgLD~~sr~~Lle 184 (549)
T PRK13545 112 MMG-L-TKEKIKEIIPEIIEFADIGK-FIYQPVKTYSSGMKSR----LGFAISVHINPDILVIDEALSVGDQTFTKKCLD 184 (549)
T ss_pred hcC-C-CHHHHHHHHHHHHHHcCChh-HhhCCcccCCHHHHHH----HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH
Confidence 000 1 11112222333444445655 5567788999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 379 ILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 379 lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
+|+++.+.+.+++...|++.....+++.+.++..|+++..++.
T Consensus 185 lL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~ 227 (549)
T PRK13545 185 KMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDI 227 (549)
T ss_pred HHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999876556778888888888777777888888888776544
No 251
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=3e-19 Score=182.26 Aligned_cols=189 Identities=13% Similarity=0.113 Sum_probs=134.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCcccccc---eeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHFQ---TLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~~---~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
++.+|++++|+|+||+|||||+++|+|+.. .|.+.+.|...... ...++..++|+.+...+|+ . ++.
T Consensus 67 ~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~--tv~ 143 (305)
T PRK14264 67 DIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFP-K--SIR 143 (305)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCcccc-c--cHH
Confidence 477999999999999999999999999963 79999998754321 1123456888888766665 2 666
Q ss_pred HHHHhccCCcc-----------hhh--h-HHHHHHHHHHhCCcc-chhhHhhccCCCCCCccccCCCchHHHHHHHHHHc
Q 010472 296 DMVASGVLPID-----------RMT--E-HRQAVQVVANRVPRH-VIENVCKINLPKPKPYESQSRPPLALELLRAYCAS 360 (509)
Q Consensus 296 e~v~~g~~~~~-----------~~~--~-~~~~~~~i~~~l~~~-~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~ 360 (509)
+++..+..... ... . ....+..+.+.+... .+.. +....+..||+||+|| +.||+||+.+
T Consensus 144 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LSgGq~qr----v~LAraL~~~ 218 (305)
T PRK14264 144 ENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVND-RLDDNALGLSGGQQQR----LCIARCLAVD 218 (305)
T ss_pred HHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhH-HhcCccccCCHHHHHH----HHHHHHHhcC
Confidence 66665422100 000 0 011223333333321 1223 3456678999999999 9999999999
Q ss_pred CCce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchh-hHhhcccccccCCCCcc
Q 010472 361 RGYV----ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMED-TQASSLLELHESDASDA 423 (509)
Q Consensus 361 p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 423 (509)
|.+| |++|||+.++ .+..+|+.+.++ ..++...|++.....+++. +.+++.|++++.++.+.
T Consensus 219 p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~-~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~~g~~~~ 286 (305)
T PRK14264 219 PEVILMDEPASALDPIATSKIEDLIEELAEE-YTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDK 286 (305)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-CEEEEEEcCHHHHHHhcCEEEEEecCCEEEEeCCHHH
Confidence 9998 9999999999 999999999876 6788888998886665555 45678888887665543
No 252
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=3.6e-19 Score=176.31 Aligned_cols=190 Identities=17% Similarity=0.098 Sum_probs=135.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCC-------cceEEeeCCcccccc---eeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQK-------RTGVTSTPGKTKHFQ---TLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~-------~~g~~~~~G~t~~~~---~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
++.+|++++|+|+||+|||||+++|+|+. ..|.+.+.|...... ....+..++|+.+...+|+. +..
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~---t~~ 101 (250)
T PRK14266 25 DIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK---SIF 101 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcc---hHH
Confidence 47789999999999999999999999974 369999999764321 11234568888887666652 556
Q ss_pred HHHHhccCCcchh--hhHHHHHHHHHHhCCcc-chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCC
Q 010472 296 DMVASGVLPIDRM--TEHRQAVQVVANRVPRH-VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSG 368 (509)
Q Consensus 296 e~v~~g~~~~~~~--~~~~~~~~~i~~~l~~~-~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsG 368 (509)
+++..+....... ......+..+.+.++.. .+.. +....+..||+||+|| ++||+||+.+|+++ |++|
T Consensus 102 ~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~Gq~qr----v~laral~~~p~llllDEP~~g 176 (250)
T PRK14266 102 DNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-KLDKSALGLSGGQQQR----LCIARTIAVSPEVILMDEPCSA 176 (250)
T ss_pred HHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-HHhCCcccCCHHHHHH----HHHHHHHHcCCCEEEEcCCCcc
Confidence 6665442111100 01112222333333221 1222 3456678899999999 99999999999998 9999
Q ss_pred CCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 369 LPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 369 LD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
||..++ .+..+|+++.++ .+++...|.+.....+++.+.+++.|++++.++.+..
T Consensus 177 LD~~~~~~l~~~l~~~~~~-~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 177 LDPISTTKIEDLIHKLKED-YTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred CCHHHHHHHHHHHHHHhcC-CeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 999999 999999999764 5777888888888888888888888888876655443
No 253
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.79 E-value=1.5e-19 Score=176.34 Aligned_cols=178 Identities=16% Similarity=0.108 Sum_probs=125.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc-eeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ-TLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~-~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
.+.+|++++|+|+||+|||||+++|+|+.+ .|.+.+.|...... .......++|+++...+|+ . +..+++..+.
T Consensus 36 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~--tv~~nl~~~~ 112 (226)
T cd03248 36 TLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-R--SLQDNIAYGL 112 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-h--hHHHHhcccc
Confidence 467899999999999999999999999976 79999988653221 1122456888888766654 2 5666765543
Q ss_pred CCcchhhhHHHH--HHHHHHhCCcc--chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 303 LPIDRMTEHRQA--VQVVANRVPRH--VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 303 ~~~~~~~~~~~~--~~~i~~~l~~~--~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
.... ....... ...+.+.+..+ ++.. +....+..||+|++|| +.||+||+.+|.++ |++|||+.++
T Consensus 113 ~~~~-~~~~~~~~~~~~~~~~l~~l~~gl~~-~~~~~~~~LSgG~~qr----v~laral~~~p~llllDEPt~~LD~~~~ 186 (226)
T cd03248 113 QSCS-FECVKEAAQKAHAHSFISELASGYDT-EVGEKGSQLSGGQKQR----VAIARALIRNPQVLILDEATSALDAESE 186 (226)
T ss_pred CCCC-HHHHHHHHHHcCcHHHHHhccccccc-hhhcCCCcCCHHHHHH----HHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 3211 1010011 01122333333 4554 3455678999999999 99999999999998 9999999999
Q ss_pred -HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccc
Q 010472 375 -AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLE 414 (509)
Q Consensus 375 -~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~ 414 (509)
.+..+|+++.++ ..++...|++...+. ++.++.++.|+
T Consensus 187 ~~l~~~l~~~~~~-~tii~~sh~~~~~~~-~d~i~~l~~g~ 225 (226)
T cd03248 187 QQVQQALYDWPER-RTVLVIAHRLSTVER-ADQILVLDGGR 225 (226)
T ss_pred HHHHHHHHHHcCC-CEEEEEECCHHHHHh-CCEEEEecCCc
Confidence 999999998765 567777788887776 55666655554
No 254
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.79 E-value=2.9e-19 Score=176.60 Aligned_cols=193 Identities=11% Similarity=0.026 Sum_probs=128.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCC--c--ceEEeeCCcccccce--eeecCeEEEEeCCCccCCCCcccHHHH-H
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQK--R--TGVTSTPGKTKHFQT--LIISEKLVLCDCPGLVFPSFSISRYDM-V 298 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~--~--~g~~~~~G~t~~~~~--~~~~~~i~l~d~pg~~~p~~~~~~~e~-v 298 (509)
.+.+|++++|+|+||+|||||+++|+|+. + .|.+.+.|....... ...+..++++.+....++.++...+.. +
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~ 102 (248)
T PRK09580 23 EVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTA 102 (248)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHHh
Confidence 46789999999999999999999999983 2 799999986542211 111245777777666666543211111 1
Q ss_pred HhccCCc--chhhhHHHHHHHHHHhCCccchhhHhhccCCC-CCCccccCCCchHHHHHHHHHHcCCce----eCCCCCH
Q 010472 299 ASGVLPI--DRMTEHRQAVQVVANRVPRHVIENVCKINLPK-PKPYESQSRPPLALELLRAYCASRGYV----ASSGLPD 371 (509)
Q Consensus 299 ~~g~~~~--~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~-~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~ 371 (509)
...+... ....+.......+.+.+..+++...+....+. .||+||+|| ++||+|++.+|.++ ||+|||.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qr----v~laral~~~p~illLDEPt~~LD~ 178 (248)
T PRK09580 103 LNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKR----NDILQMAVLEPELCILDESDSGLDI 178 (248)
T ss_pred hhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHH----HHHHHHHHcCCCEEEEeCCCccCCH
Confidence 1111000 00001111122333444444453224444453 799999999 99999999999998 9999999
Q ss_pred HHH-HHHHHHHHhhcCCccEEEcCCCCChhhcc-chhhHhhcccccccCCCCc
Q 010472 372 ETR-AARIILKDFIDGKLPHFEMPPGMSHEEVG-MEDTQASSLLELHESDASD 422 (509)
Q Consensus 372 ~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 422 (509)
.++ .+..+|+.+.+...+++..+|++.....+ ++.+.++..|+++..++.+
T Consensus 179 ~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~ 231 (248)
T PRK09580 179 DALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 231 (248)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHH
Confidence 999 99999999876555677778887787775 6777788888887655443
No 255
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.79 E-value=2e-19 Score=195.92 Aligned_cols=187 Identities=12% Similarity=0.076 Sum_probs=135.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce--eeecCeEEEEeCCC---ccCCCCcccHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT--LIISEKLVLCDCPG---LVFPSFSISRYDMV 298 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~--~~~~~~i~l~d~pg---~~~p~~~~~~~e~v 298 (509)
++.+|+++||+|+||||||||+++|+|+.+ .|.+.+.|....... ...+..++|+++.. .+|+.+ +..+++
T Consensus 285 ~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~--t~~~~l 362 (510)
T PRK15439 285 EVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDA--PLAWNV 362 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCC--cHHHHH
Confidence 578999999999999999999999999976 789999886542111 01234678887752 245655 344444
Q ss_pred Hhcc---CCcchhhhHHHHHHHHHHhCCccchh-hHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 299 ASGV---LPIDRMTEHRQAVQVVANRVPRHVIE-NVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 299 ~~g~---~~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
.... .... . ........+.+.+..++|. . ...+.+..|||||+|| +.||+||+.+|.+| ||+|||
T Consensus 363 ~~~~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~LSgG~kqr----l~la~al~~~p~lLlLDEPt~gLD 435 (510)
T PRK15439 363 CALTHNRRGFW-I-KPARENAVLERYRRALNIKFN-HAEQAARTLSGGNQQK----VLIAKCLEASPQLLIVDEPTRGVD 435 (510)
T ss_pred Hhhhhhhhccc-c-ChHHHHHHHHHHHHHcCCCCC-CccCccccCCcHHHHH----HHHHHHHhhCCCEEEECCCCcCcC
Confidence 3211 1100 0 0111112344445555664 3 4567788999999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
+.++ .+..+|+++.+.+..++...|++...+.+++.+.+++.|+++.....
T Consensus 436 ~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~ 487 (510)
T PRK15439 436 VSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTG 487 (510)
T ss_pred hhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcc
Confidence 9999 99999999976567788888999998887788888888888765433
No 256
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.79 E-value=3.1e-19 Score=195.36 Aligned_cols=190 Identities=12% Similarity=0.059 Sum_probs=135.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCccccccee----ee-cCeEEEEeCCCc--cCCCCc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHFQTL----II-SEKLVLCDCPGL--VFPSFS 291 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~~~~----~~-~~~i~l~d~pg~--~~p~~~ 291 (509)
++.+|+++||+|+||||||||+++|+|+.+ +|.+.+.|........ .. ...++|+.|... +++.+
T Consensus 31 ~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~- 109 (529)
T PRK15134 31 QIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLH- 109 (529)
T ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchh-
Confidence 467899999999999999999999999975 5888898876432111 11 246888888643 33433
Q ss_pred ccHHHHHHhccCCcchhhhHHHHHHHHHHhCCccchhhH--hhccCCCCCCccccCCCchHHHHHHHHHHcCCce----e
Q 010472 292 ISRYDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIENV--CKINLPKPKPYESQSRPPLALELLRAYCASRGYV----A 365 (509)
Q Consensus 292 ~~~~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~--~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----P 365 (509)
++.+++.......... ........+.+.+..++|.+. +..+.+..|||||+|| ++||+||+.+|.+| |
T Consensus 110 -~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qr----v~iAraL~~~p~llllDEP 183 (529)
T PRK15134 110 -TLEKQLYEVLSLHRGM-RREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQR----VMIAMALLTRPELLIADEP 183 (529)
T ss_pred -hHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHH----HHHHHHHhcCCCEEEEcCC
Confidence 3444443221000001 111222334444444455431 3466789999999999 99999999999998 9
Q ss_pred CCCCCHHHH-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 366 SSGLPDETR-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 366 tsGLD~~~r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
|+|||+..+ .+..+|+++.. .+.+++..+|++.....+++.+.+++.|.+++.++.+
T Consensus 184 t~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~ 242 (529)
T PRK15134 184 TTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAA 242 (529)
T ss_pred CCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999 99999999865 3567888899999988878888888889888766554
No 257
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=3.9e-19 Score=177.40 Aligned_cols=191 Identities=15% Similarity=0.079 Sum_probs=133.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCccccc---ceeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHF---QTLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~---~~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
++.+|++++|+|+||+|||||+++|+|+.+ .|.+.+.|..... ....++..++++.+...+|+ . +..
T Consensus 29 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~--tv~ 105 (261)
T PRK14258 29 EIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-M--SVY 105 (261)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc-c--cHH
Confidence 478999999999999999999999999976 3677777754311 11123456888887666666 4 556
Q ss_pred HHHHhccCCcc--hhhhHHHHHHHHHHhCCccc-hhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCC
Q 010472 296 DMVASGVLPID--RMTEHRQAVQVVANRVPRHV-IENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSG 368 (509)
Q Consensus 296 e~v~~g~~~~~--~~~~~~~~~~~i~~~l~~~~-L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsG 368 (509)
+++..+..... ........+..+.+.+.... +.. .....+..||+||+|| ++||+||+.+|.++ |++|
T Consensus 106 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LSgGq~qr----v~laral~~~p~vllLDEP~~~ 180 (261)
T PRK14258 106 DNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-KIHKSALDLSGGQQQR----LCIARALAVKPKVLLMDEPCFG 180 (261)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-HhcCCcccCCHHHHHH----HHHHHHHhcCCCEEEEeCCCcc
Confidence 65544321100 00011122233333333211 222 3456678899999999 99999999999998 9999
Q ss_pred CCHHHH-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcc-----cccccCCCCccc
Q 010472 369 LPDETR-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSL-----LELHESDASDAE 424 (509)
Q Consensus 369 LD~~~r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 424 (509)
||..++ .+..+|+.+.. .+.+++..+|++.....+++.+++++. |++++.++.+..
T Consensus 181 LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~ 243 (261)
T PRK14258 181 LDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKI 243 (261)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHHH
Confidence 999999 99999999853 356777778888888877788888887 888877665444
No 258
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.79 E-value=1.8e-19 Score=191.07 Aligned_cols=189 Identities=11% Similarity=0.086 Sum_probs=155.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceee--ecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLI--ISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~--~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
.+.+|++++|+|.||||||||+++|+|.+. .|++.+.|....+.... ....|.++.|.-.++|++ ++.+|++.|
T Consensus 30 ~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~L--sVaeNifLg 107 (500)
T COG1129 30 TVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNL--SVAENIFLG 107 (500)
T ss_pred EEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCc--cHHHHhhcc
Confidence 478999999999999999999999999988 89999999887654432 345789999999999999 788999988
Q ss_pred cCCcc--hhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-
Q 010472 302 VLPID--RMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR- 374 (509)
Q Consensus 302 ~~~~~--~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r- 374 (509)
..|.. .+.+.........+.+..+++.. -.......||.|++|. ++||+|++.+++++ ||+.|+....
T Consensus 108 re~~~~~g~id~~~m~~~A~~~l~~lg~~~-~~~~~v~~LsiaqrQ~----VeIArAl~~~arllIlDEPTaaLt~~E~~ 182 (500)
T COG1129 108 REPTRRFGLIDRKAMRRRARELLARLGLDI-DPDTLVGDLSIAQRQM----VEIARALSFDARVLILDEPTAALTVKETE 182 (500)
T ss_pred cccccCCCccCHHHHHHHHHHHHHHcCCCC-ChhhhhhhCCHHHHHH----HHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 77653 22233344444444444444422 1345677899999999 99999999999988 9999999888
Q ss_pred HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 375 AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 375 ~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
.+..+|++++..++.++...|.|++...+||++.+++.|+.+...+.
T Consensus 183 ~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 183 RLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeeccc
Confidence 99999999999999999999999999999999999999999887764
No 259
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.79 E-value=1.7e-19 Score=196.98 Aligned_cols=186 Identities=14% Similarity=0.096 Sum_probs=133.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCC---c-ceEEeeCC-----------------------cccc-----cce---
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQK---R-TGVTSTPG-----------------------KTKH-----FQT--- 270 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~---~-~g~~~~~G-----------------------~t~~-----~~~--- 270 (509)
++.+|++++|+|+||||||||+++|+|+. + .|.+.+.| .+.. ...
T Consensus 22 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 101 (520)
T TIGR03269 22 TIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSD 101 (520)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccCH
Confidence 46789999999999999999999999985 3 78887752 1110 000
Q ss_pred ---eeecCeEEEEeCC-CccCCCCcccHHHHHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCC
Q 010472 271 ---LIISEKLVLCDCP-GLVFPSFSISRYDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSR 346 (509)
Q Consensus 271 ---~~~~~~i~l~d~p-g~~~p~~~~~~~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR 346 (509)
...+..++++.|. ..+++.+ ++.+++..+..... . ........+.+.+..++|.. +..+.+..|||||+||
T Consensus 102 ~~~~~~~~~i~~v~q~~~~~~~~~--tv~~~l~~~~~~~~-~-~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qr 176 (520)
T TIGR03269 102 KLRRRIRKRIAIMLQRTFALYGDD--TVLDNVLEALEEIG-Y-EGKEAVGRAVDLIEMVQLSH-RITHIARDLSGGEKQR 176 (520)
T ss_pred HHHHHhhhcEEEEeccccccCCCC--CHHHHHHHHHHHcC-C-CHHHHHHHHHHHHHHcCChh-hhhcCcccCCHHHHHH
Confidence 0123458888884 5566655 55666654321111 1 11122234455555566765 5567789999999999
Q ss_pred CchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCC
Q 010472 347 PPLALELLRAYCASRGYV----ASSGLPDETR-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDA 420 (509)
Q Consensus 347 ~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (509)
++||+||+.+|.+| ||+|||+.++ .+..+|+++.+ .+.+++..+|+......+++.+.+++.|+++..++
T Consensus 177 ----v~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~ 252 (520)
T TIGR03269 177 ----VVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGT 252 (520)
T ss_pred ----HHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecC
Confidence 99999999999998 9999999999 99999999854 45678888899888776666777788888876443
No 260
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.79 E-value=4.4e-19 Score=169.72 Aligned_cols=158 Identities=11% Similarity=0.039 Sum_probs=111.5
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
.+.+|++++|+|+||+|||||+++|+|... .|.+.+.|.............++|+.+...+++.+ +..+++.....
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~--tv~~~l~~~~~ 99 (198)
T TIGR01189 22 TLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPEL--SALENLHFWAA 99 (198)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCC--cHHHHHHHHHH
Confidence 467899999999999999999999999976 78888888653221112334677887765566655 45555533211
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
.. . .... .+.+.+..+++.. +....+..||+||+|| ++||+|++.+|.++ |++|||..++ .+..
T Consensus 100 ~~-~--~~~~---~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----v~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 168 (198)
T TIGR01189 100 IH-G--GAQR---TIEDALAAVGLTG-FEDLPAAQLSAGQQRR----LALARLWLSRAPLWILDEPTTALDKAGVALLAG 168 (198)
T ss_pred Hc-C--CcHH---HHHHHHHHcCCHH-HhcCChhhcCHHHHHH----HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 00 0 1111 2333444445665 5567788999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhcCCccEEEcCCC
Q 010472 379 ILKDFIDGKLPHFEMPPG 396 (509)
Q Consensus 379 lLkd~~~gkl~~~~~pp~ 396 (509)
+|+++.+.+..++...|.
T Consensus 169 ~l~~~~~~~~tii~~sH~ 186 (198)
T TIGR01189 169 LLRAHLARGGIVLLTTHQ 186 (198)
T ss_pred HHHHHHhCCCEEEEEEcc
Confidence 999985433334444443
No 261
>PRK12289 GTPase RsgA; Reviewed
Probab=99.79 E-value=1.6e-18 Score=179.38 Aligned_cols=161 Identities=25% Similarity=0.369 Sum_probs=119.1
Q ss_pred cccCcccccHHHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH-hcCCcEEEEEeCCCCCCHHHHHHHHHHHH
Q 010472 60 LVLTPFEKNLDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREI-DKYKRTLLLVNKADLLPFSVRKRWAKYFK 138 (509)
Q Consensus 60 ~~lt~fE~nle~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~-~~~K~~iLVlNK~DL~p~~~~~~W~~yf~ 138 (509)
++...+++.-.+.|. .+.++|+||+|+|+.+|.+.. ..+++|+..+ ..++++|||+||+||++.+....|.++|.
T Consensus 71 ~I~~vlpR~~~L~R~---~~aNvD~vLlV~d~~~p~~~~-~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~ 146 (352)
T PRK12289 71 AIAEVLPRKTELDRP---PVANADQILLVFALAEPPLDP-WQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQ 146 (352)
T ss_pred EEEEEeccccceech---hhhcCCEEEEEEECCCCCCCH-HHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHH
Confidence 333344444344443 589999999999999887422 3567777654 34789999999999998877789999999
Q ss_pred hcCCeEEEeehhhhHHhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccc
Q 010472 139 DHDILFVFWSAKAASAALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSV 218 (509)
Q Consensus 139 ~~gi~~if~Sa~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~~~~~~~ 218 (509)
..|+.++++||. +|. |.++|++.+.
T Consensus 147 ~~g~~v~~iSA~------tg~-----------------------GI~eL~~~L~-------------------------- 171 (352)
T PRK12289 147 QWGYQPLFISVE------TGI-----------------------GLEALLEQLR-------------------------- 171 (352)
T ss_pred hcCCeEEEEEcC------CCC-----------------------CHHHHhhhhc--------------------------
Confidence 899988888985 232 2345544331
Q ss_pred cccccCccCCCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCC-------cccccceeeecCeEEEEeCCCccCCCC
Q 010472 219 DESFAGNVAPKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPG-------KTKHFQTLIISEKLVLCDCPGLVFPSF 290 (509)
Q Consensus 219 ~~~~~~~~i~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G-------~t~~~~~~~~~~~i~l~d~pg~~~p~~ 290 (509)
+.+++|+|+||||||||||.|+|.....+..++| +|++.+.+.+.....++||||+..+.+
T Consensus 172 -----------~ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~~liDTPG~~~~~l 239 (352)
T PRK12289 172 -----------NKITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGGLLADTPGFNQPDL 239 (352)
T ss_pred -----------cceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCcEEEeCCCcccccc
Confidence 3468999999999999999999987655555666 566666666655668999999987776
No 262
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.78 E-value=1.9e-19 Score=176.96 Aligned_cols=180 Identities=14% Similarity=0.082 Sum_probs=125.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++++|++++|+|+||||||||+++|+|+.+ .|.+.+.|..... ........++|+.+...+++ . +..+++..+.
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~--tv~e~l~~~~ 101 (238)
T cd03249 25 TIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-G--TIAENIRYGK 101 (238)
T ss_pred EecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-h--hHHHHhhccC
Confidence 478999999999999999999999999976 8999999865321 11122345888888665554 3 5666665543
Q ss_pred CCcchhhhHHHHHHHHHHhCCc------c--chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPR------H--VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~------~--~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
.... . .......+.... + ++.. .....+..||+||+|| +.||+||+.+|+++ |++|||
T Consensus 102 ~~~~-~----~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~LS~G~~qr----v~la~al~~~p~llllDEP~~gLD 171 (238)
T cd03249 102 PDAT-D----EEVEEAAKKANIHDFIMSLPDGYDT-LVGERGSQLSGGQKQR----IAIARALLRNPKILLLDEATSALD 171 (238)
T ss_pred CCCC-H----HHHHHHHHHcChHHHHHhhccccce-eeccCCccCCHHHHHH----HHHHHHHhcCCCEEEEeCccccCC
Confidence 2111 0 111111111111 0 1111 2234567899999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCC
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDA 420 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (509)
+..+ .+..+|+++.+ +..++...|++...++ ++.+.++..|++++.++
T Consensus 172 ~~~~~~l~~~l~~~~~-g~~vi~~sh~~~~~~~-~d~v~~l~~G~i~~~~~ 220 (238)
T cd03249 172 AESEKLVQEALDRAMK-GRTTIVIAHRLSTIRN-ADLIAVLQNGQVVEQGT 220 (238)
T ss_pred HHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHhh-CCEEEEEECCEEEEeCC
Confidence 9999 99999999874 4556666788877775 66677778888876543
No 263
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.78 E-value=4.6e-19 Score=170.84 Aligned_cols=162 Identities=9% Similarity=-0.024 Sum_probs=116.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||+|||||+++|+|+.. .|.+.+.|...... .....++++.+...+++.. ++.+++.....
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~--tv~~~l~~~~~ 99 (207)
T PRK13539 24 TLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDP--DVAEACHYLGHRNAMKPAL--TVAENLEFWAA 99 (207)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcch--hhHhhcEEecCCCcCCCCC--cHHHHHHHHHH
Confidence 477999999999999999999999999976 79999988653211 1344567776544445555 45555433211
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
.. .. . .. .+.+.+..+++.. +....+..||+||+|| +.||+|++.+|.++ |++|||..++ .+..
T Consensus 100 ~~-~~-~-~~---~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr----l~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 168 (207)
T PRK13539 100 FL-GG-E-EL---DIAAALEAVGLAP-LAHLPFGYLSAGQKRR----VALARLLVSNRPIWILDEPTAALDAAAVALFAE 168 (207)
T ss_pred hc-CC-c-HH---HHHHHHHHcCCHH-HHcCChhhcCHHHHHH----HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 00 00 1 11 2334444455665 4566788999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhcCCccEEEcCCCCChhhc
Q 010472 379 ILKDFIDGKLPHFEMPPGMSHEEV 402 (509)
Q Consensus 379 lLkd~~~gkl~~~~~pp~~~~~~~ 402 (509)
+|+++.+.+..++...|.......
T Consensus 169 ~l~~~~~~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 169 LIRAHLAQGGIVIAATHIPLGLPG 192 (207)
T ss_pred HHHHHHHCCCEEEEEeCCchhhcc
Confidence 999986555566777777665554
No 264
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=2.6e-19 Score=174.90 Aligned_cols=180 Identities=14% Similarity=0.092 Sum_probs=126.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++.+|++++|+|+||+|||||+++|+|+.+ .|.+.+.|..... .....+..++|+.+...+|+. +..+++....
T Consensus 25 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~---tv~~~~~~~~ 101 (229)
T cd03254 25 SIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG---TIMENIRLGR 101 (229)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh---HHHHHHhccC
Confidence 477999999999999999999999999986 7999998865321 111234568888887666542 5566665432
Q ss_pred CCcchhhhHHHHHHHHHHh------CCcc--chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 303 LPIDRMTEHRQAVQVVANR------VPRH--VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~------l~~~--~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
... . ........+. +... ++.. .....+..||+||+|| +.||+||+.+|+++ |++|||
T Consensus 102 ~~~----~-~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~LS~G~~~r----v~la~al~~~p~llllDEP~~~LD 171 (229)
T cd03254 102 PNA----T-DEEVIEAAKEAGAHDFIMKLPNGYDT-VLGENGGNLSQGERQL----LAIARAMLRDPKILILDEATSNID 171 (229)
T ss_pred CCC----C-HHHHHHHHHHhChHHHHHhCcccccC-HhhcCCCcCCHHHHHH----HHHHHHHhcCCCEEEEeCccccCC
Confidence 211 0 0111111111 1111 2222 2234467899999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCC
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDA 420 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (509)
..++ .+..+|+.+.+| ..++..+|.+...+. ++.+.++..|+++..++
T Consensus 172 ~~~~~~l~~~l~~~~~~-~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~ 220 (229)
T cd03254 172 TETEKLIQEALEKLMKG-RTSIIIAHRLSTIKN-ADKILVLDDGKIIEEGT 220 (229)
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEecCHHHHhh-CCEEEEEeCCeEEEeCC
Confidence 9999 999999998764 556666677777766 67777888888876444
No 265
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.78 E-value=2.4e-18 Score=163.42 Aligned_cols=160 Identities=29% Similarity=0.312 Sum_probs=115.0
Q ss_pred ccCcccccHHHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHH----HHHHHHH
Q 010472 61 VLTPFEKNLDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSV----RKRWAKY 136 (509)
Q Consensus 61 ~lt~fE~nle~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~----~~~W~~y 136 (509)
....|+.+..++.++...++++|+||+|+|+++|.......+. . ...++++|+|+||+||++.+. ...|.+.
T Consensus 14 ~~~~~~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~--~--~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~ 89 (190)
T cd01855 14 DPVEIPDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLR--L--FGGNNPVILVGNKIDLLPKDKNLVRIKNWLRA 89 (190)
T ss_pred ccccCChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhHH--H--hcCCCcEEEEEEchhcCCCCCCHHHHHHHHHH
Confidence 3455666655788899999999999999999998866555442 1 134789999999999986533 3446521
Q ss_pred --HHhcCC---eEEEeehhhhHHhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 010472 137 --FKDHDI---LFVFWSAKAASAALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTG 211 (509)
Q Consensus 137 --f~~~gi---~~if~Sa~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~ 211 (509)
+...++ .++++||+ .|. |.++|++.|....
T Consensus 90 ~~~~~~~~~~~~i~~vSA~------~~~-----------------------gi~eL~~~l~~~l---------------- 124 (190)
T cd01855 90 KAAAGLGLKPKDVILISAK------KGW-----------------------GVEELINAIKKLA---------------- 124 (190)
T ss_pred HHHhhcCCCcccEEEEECC------CCC-----------------------CHHHHHHHHHHHh----------------
Confidence 223333 45667874 222 4567777665432
Q ss_pred CCCcccccccccCccCCCCcEEEEEecCCCCHhHHHHHHhcCCc--------ceEEeeCCcccccceeeecCeEEEEeCC
Q 010472 212 KSNVQSVDESFAGNVAPKNVIVGFVGYPNVGKSSTINALVGQKR--------TGVTSTPGKTKHFQTLIISEKLVLCDCP 283 (509)
Q Consensus 212 ~~~~~~~~~~~~~~~i~~g~~vglvG~nGaGKSTLln~L~G~~~--------~g~~~~~G~t~~~~~~~~~~~i~l~d~p 283 (509)
+.+..++|+|.+|+|||||||+|.+... ..++..+|+|++.+...+...+.++|+|
T Consensus 125 ----------------~~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~DtP 188 (190)
T cd01855 125 ----------------KKGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGNGKKLYDTP 188 (190)
T ss_pred ----------------hcCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCCCCEEEeCc
Confidence 1245789999999999999999998643 3567788999998887776678999999
Q ss_pred Cc
Q 010472 284 GL 285 (509)
Q Consensus 284 g~ 285 (509)
|+
T Consensus 189 G~ 190 (190)
T cd01855 189 GI 190 (190)
T ss_pred CC
Confidence 96
No 266
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.78 E-value=4.2e-19 Score=167.75 Aligned_cols=148 Identities=13% Similarity=0.095 Sum_probs=110.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce--eeecCeEEEEeCCC---ccCCCCcccHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT--LIISEKLVLCDCPG---LVFPSFSISRYDMV 298 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~--~~~~~~i~l~d~pg---~~~p~~~~~~~e~v 298 (509)
++.+|++++|+|+||+|||||+++|+|... .|.+.+.|....... ...+..++|+.+.. .+++.+ +..+++
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~--t~~e~l 99 (182)
T cd03215 22 EVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDL--SVAENI 99 (182)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCC--cHHHHH
Confidence 467899999999999999999999999987 799999986543211 12234577776642 233433 333332
Q ss_pred HhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 299 ASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 299 ~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
..+. .||+||+|| ++||+|++.+|.++ |++|||+.++
T Consensus 100 ~~~~-----------------------------------~LS~G~~qr----l~la~al~~~p~llllDEP~~~LD~~~~ 140 (182)
T cd03215 100 ALSS-----------------------------------LLSGGNQQK----VVLARWLARDPRVLILDEPTRGVDVGAK 140 (182)
T ss_pred HHHh-----------------------------------hcCHHHHHH----HHHHHHHccCCCEEEECCCCcCCCHHHH
Confidence 2110 099999999 99999999999998 9999999999
Q ss_pred -HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccc
Q 010472 375 -AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLE 414 (509)
Q Consensus 375 -~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~ 414 (509)
.+.++|+++.+.+.+++...|++.....+++.+.+++.|+
T Consensus 141 ~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~ 181 (182)
T cd03215 141 AEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGR 181 (182)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCc
Confidence 9999999997655677778888877766666666666554
No 267
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.78 E-value=2.7e-19 Score=194.00 Aligned_cols=190 Identities=12% Similarity=0.059 Sum_probs=132.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc---ceEEeeCCcccccc--eeeecCeEEEEeCCCccCCCCcccHHHHHHh
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR---TGVTSTPGKTKHFQ--TLIISEKLVLCDCPGLVFPSFSISRYDMVAS 300 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~---~g~~~~~G~t~~~~--~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~ 300 (509)
.+.+|+++||+|+||||||||+++|+|..+ .|.+.+.|...... ....+..++++.+...+++.+..+..+.+..
T Consensus 282 ~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~ 361 (490)
T PRK10938 282 QVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILS 361 (490)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHh
Confidence 578999999999999999999999999865 58999988643211 1112346788877543333332234444433
Q ss_pred ccCC---cchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHH
Q 010472 301 GVLP---IDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDET 373 (509)
Q Consensus 301 g~~~---~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~ 373 (509)
+... ...... ......+.+.+..++|...+....+..||+||+|| ++||+||+.+|.++ ||+|||+.+
T Consensus 362 ~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr----v~la~al~~~p~lllLDEPt~gLD~~~ 436 (490)
T PRK10938 362 GFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRL----ALIVRALVKHPTLLILDEPLQGLDPLN 436 (490)
T ss_pred ccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHH----HHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 3211 000000 11122334444445565324567788999999999 99999999999998 999999999
Q ss_pred H-HHHHHHHHhhc-CCccEEEcCCCCChhhc-cchhhHhhcccccccCCC
Q 010472 374 R-AARIILKDFID-GKLPHFEMPPGMSHEEV-GMEDTQASSLLELHESDA 420 (509)
Q Consensus 374 r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~-~~~~~~~~~~~~~~~~~~ 420 (509)
+ .+.++|+++.+ |+.+++..+|++..... +++.+.+++.|++++.-.
T Consensus 437 ~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~~ 486 (490)
T PRK10938 437 RQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYVQ 486 (490)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEeec
Confidence 9 99999999965 55667888899888764 688888888888876543
No 268
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.78 E-value=5.5e-19 Score=168.71 Aligned_cols=152 Identities=13% Similarity=0.129 Sum_probs=116.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCC--c--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQK--R--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~--~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
++.+|++++|+|+||+|||||+++|+|+. . .|.+.+.|...... .....++++++...+++.+ +..+++..+
T Consensus 31 ~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~--~~~~~i~~~~q~~~~~~~~--t~~~~i~~~ 106 (194)
T cd03213 31 KAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKR--SFRKIIGYVPQDDILHPTL--TVRETLMFA 106 (194)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchH--hhhheEEEccCcccCCCCC--cHHHHHHHH
Confidence 46789999999999999999999999998 6 79999998764321 2345688887766666655 333333211
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
. . + ..||+||+|| +.||+||+.+|.++ |++|||..++ .+
T Consensus 107 ~------------------~---------~-----~~LS~G~~qr----v~laral~~~p~illlDEP~~~LD~~~~~~l 150 (194)
T cd03213 107 A------------------K---------L-----RGLSGGERKR----VSIALELVSNPSLLFLDEPTSGLDSSSALQV 150 (194)
T ss_pred H------------------H---------h-----ccCCHHHHHH----HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHH
Confidence 0 0 0 0699999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhcCCccEEEcCCCCC-hhhccchhhHhhccccccc
Q 010472 377 RIILKDFIDGKLPHFEMPPGMS-HEEVGMEDTQASSLLELHE 417 (509)
Q Consensus 377 ~~lLkd~~~gkl~~~~~pp~~~-~~~~~~~~~~~~~~~~~~~ 417 (509)
..+|+.+.+...+++...|+.. ....+++.+++++.|+++.
T Consensus 151 ~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~ 192 (194)
T cd03213 151 MSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIY 192 (194)
T ss_pred HHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEe
Confidence 9999998764556777777775 4555667777777777754
No 269
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=4.2e-19 Score=174.15 Aligned_cols=181 Identities=14% Similarity=0.073 Sum_probs=127.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++.+|++++|+|+||+|||||+++|+|+.+ .|.+.++|..... .....+..++|+++...+|+ . +..+++..+.
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~--tv~~nl~~~~ 99 (236)
T cd03253 23 TIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-D--TIGYNIRYGR 99 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-c--hHHHHHhhcC
Confidence 467899999999999999999999999986 7999998865321 11123346888888766654 3 5666665543
Q ss_pred CCcchhhhHHHHHHHHHHhCC------cc--chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVP------RH--VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~------~~--~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
.... . ........... .+ ++.. .....+..||+||+|| +.||+||+.+|.++ |++|||
T Consensus 100 ~~~~---~--~~~~~~~~~~~l~~~~~~l~~~~~~-~~~~~~~~LS~G~~~r----l~la~aL~~~p~llllDEP~~~LD 169 (236)
T cd03253 100 PDAT---D--EEVIEAAKAAQIHDKIMRFPDGYDT-IVGERGLKLSGGEKQR----VAIARAILKNPPILLLDEATSALD 169 (236)
T ss_pred CCCC---H--HHHHHHHHHcCcHHHHHhccccccc-hhhcCCCcCCHHHHHH----HHHHHHHhcCCCEEEEeCCcccCC
Confidence 2110 0 11111111111 11 2222 2233467899999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
+.++ .+..+|.++.+ +..++...|.....+. ++.+.++..|+++..++.
T Consensus 170 ~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~~~~~ 219 (236)
T cd03253 170 THTEREIQAALRDVSK-GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTH 219 (236)
T ss_pred HHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHh-CCEEEEEECCEEEeeCCH
Confidence 9999 99999999977 4566666777777766 667777788888765443
No 270
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.78 E-value=3.4e-19 Score=194.58 Aligned_cols=186 Identities=10% Similarity=0.059 Sum_probs=134.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeC-Ccc-cccce------eeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTP-GKT-KHFQT------LIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~-G~t-~~~~~------~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
.+.+|++++|+|+||||||||+++|+|+.+ .|.+.+. |.. ..... ...+..++|++|...+++.+ ++.
T Consensus 306 ~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~--tv~ 383 (520)
T TIGR03269 306 EVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHR--TVL 383 (520)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCC--cHH
Confidence 578999999999999999999999999976 7888885 531 11100 11234588888876667766 556
Q ss_pred HHHHhccCCcchhhhHHHHHHHHHHhCCccchhh----HhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCC
Q 010472 296 DMVASGVLPIDRMTEHRQAVQVVANRVPRHVIEN----VCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASS 367 (509)
Q Consensus 296 e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~----~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----Pts 367 (509)
+++..+.. .. . ........+.+.+..++|.. .+..+.+..|||||+|| ++||+||+.+|.+| ||+
T Consensus 384 e~l~~~~~-~~-~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qr----v~laral~~~p~lLllDEPt~ 456 (520)
T TIGR03269 384 DNLTEAIG-LE-L-PDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHR----VALAQVLIKEPRIVILDEPTG 456 (520)
T ss_pred HHHHHHHH-cC-C-CHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHH----HHHHHHHhcCCCEEEEeCCcc
Confidence 66543211 00 0 01111123334444445532 13467788999999999 99999999999998 999
Q ss_pred CCCHHHH-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCC
Q 010472 368 GLPDETR-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDA 420 (509)
Q Consensus 368 GLD~~~r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (509)
|||+.++ .+..+|+++.+ .+..++..+|++.....+++.+.+++.|++++.++
T Consensus 457 ~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~ 511 (520)
T TIGR03269 457 TMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511 (520)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999 99999999865 36778888899998887777888888888876543
No 271
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=4.7e-19 Score=166.81 Aligned_cols=145 Identities=17% Similarity=0.177 Sum_probs=108.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc---eeeecCeEEEEeCCCccCCCCcccHHHHHHh
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ---TLIISEKLVLCDCPGLVFPSFSISRYDMVAS 300 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~---~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~ 300 (509)
++.+|++++|+|+||+|||||+++|+|..+ .|.+.+.|...... .......+.|+.+...+++.+ +..+++..
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--t~~~~l~~ 99 (178)
T cd03229 22 NIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHL--TVLENIAL 99 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCC--CHHHheee
Confidence 577899999999999999999999999977 78999988654221 112345677777654444443 22222110
Q ss_pred ccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-H
Q 010472 301 GVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-A 375 (509)
Q Consensus 301 g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~ 375 (509)
. ||+||+|| +.||+||+.+|+++ |++|||..++ .
T Consensus 100 ~-------------------------------------lS~G~~qr----~~la~al~~~p~llilDEP~~~LD~~~~~~ 138 (178)
T cd03229 100 G-------------------------------------LSGGQQQR----VALARALAMDPDVLLLDEPTSALDPITRRE 138 (178)
T ss_pred c-------------------------------------CCHHHHHH----HHHHHHHHCCCCEEEEeCCcccCCHHHHHH
Confidence 0 99999999 99999999999998 9999999999 9
Q ss_pred HHHHHHHhhcC-CccEEEcCCCCChhhccchhhHhhccc
Q 010472 376 ARIILKDFIDG-KLPHFEMPPGMSHEEVGMEDTQASSLL 413 (509)
Q Consensus 376 ~~~lLkd~~~g-kl~~~~~pp~~~~~~~~~~~~~~~~~~ 413 (509)
+..+|+.+.+. ..+++...|+....+.+++.+..++.|
T Consensus 139 l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g 177 (178)
T cd03229 139 VRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177 (178)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCC
Confidence 99999998764 567777778877776555555555443
No 272
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.77 E-value=4.9e-19 Score=184.66 Aligned_cols=187 Identities=14% Similarity=0.127 Sum_probs=151.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccccee--eecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTL--IISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~--~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
++.+|++.+|+|.||||||||+++|.|.+. +|.+.+.|....+... ..+..|+++.|...++|.+ ++.+|+..|
T Consensus 26 ~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~l--TV~ENiiLg 103 (501)
T COG3845 26 SVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTL--TVAENIILG 103 (501)
T ss_pred eecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeecccccccc--chhhhhhhc
Confidence 578999999999999999999999999987 8999999988665432 3456799999999999999 778899888
Q ss_pred cCCc-chhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-H
Q 010472 302 VLPI-DRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-A 375 (509)
Q Consensus 302 ~~~~-~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~ 375 (509)
.-+. ....+.......+.+...+.+|.- -......+||-|+||| ++|++||.+++.+| ||+-|.|... .
T Consensus 104 ~e~~~~~~~~~~~~~~~i~~l~~~yGl~v-dp~~~V~dLsVG~qQR----VEIlKaLyr~a~iLILDEPTaVLTP~E~~~ 178 (501)
T COG3845 104 LEPSKGGLIDRRQARARIKELSERYGLPV-DPDAKVADLSVGEQQR----VEILKALYRGARLLILDEPTAVLTPQEADE 178 (501)
T ss_pred CccccccccCHHHHHHHHHHHHHHhCCCC-CccceeecCCcchhHH----HHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 7542 112233344444544444444432 2245577899999999 99999999999998 9999999988 9
Q ss_pred HHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCC
Q 010472 376 ARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESD 419 (509)
Q Consensus 376 ~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~ 419 (509)
+..+|+.+++.+..++..+|-+.+....++.+.+++.|+.+...
T Consensus 179 lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~ 222 (501)
T COG3845 179 LFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTV 222 (501)
T ss_pred HHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeee
Confidence 99999999998888999999999999999999999999865533
No 273
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.77 E-value=8.5e-19 Score=170.29 Aligned_cols=176 Identities=14% Similarity=0.060 Sum_probs=124.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++.+|++++|+|+||+|||||+++|+|... .|.+.+.|..... .....+..++|+++...+++ . +..+++....
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~--tv~enl~~~~ 102 (221)
T cd03244 26 SIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFS-G--TIRSNLDPFG 102 (221)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCcccc-c--hHHHHhCcCC
Confidence 477899999999999999999999999976 7899998865421 11123456888888766554 2 5556653211
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchhhH----------hhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIENV----------CKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSG 368 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~----------~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsG 368 (509)
. . . ...+..+.+.+ ++.+. .....+..||+||+|| +.||+||+.+|.++ |++|
T Consensus 103 -~---~-~-~~~~~~~~~~~---~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr----~~laral~~~p~llllDEP~~~ 169 (221)
T cd03244 103 -E---Y-S-DEELWQALERV---GLKEFVESLPGGLDTVVEEGGENLSVGQRQL----LCLARALLRKSKILVLDEATAS 169 (221)
T ss_pred -C---C-C-HHHHHHHHHHh---CcHHHHHhcccccccccccCCCcCCHHHHHH----HHHHHHHhcCCCEEEEeCcccc
Confidence 1 1 1 11112222222 22221 1134677899999999 99999999999998 9999
Q ss_pred CCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCC
Q 010472 369 LPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESD 419 (509)
Q Consensus 369 LD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~ 419 (509)
||+.++ .+.++|+++.++ .+++..+|.....+. ++.+.++..|++++.+
T Consensus 170 LD~~~~~~l~~~l~~~~~~-~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~ 219 (221)
T cd03244 170 VDPETDALIQKTIREAFKD-CTVLTIAHRLDTIID-SDRILVLDKGRVVEFD 219 (221)
T ss_pred CCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHHHhh-CCEEEEEECCeEEecC
Confidence 999999 999999998765 566777777777766 4666677777776543
No 274
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.77 E-value=4.1e-19 Score=192.57 Aligned_cols=182 Identities=11% Similarity=-0.007 Sum_probs=128.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCcc--CCC----CcccHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLV--FPS----FSISRYD 296 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~--~p~----~~~~~~e 296 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|..... ........++++.|.... ++. +..++.+
T Consensus 25 ~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~ 104 (490)
T PRK10938 25 TLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAE 104 (490)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHH
Confidence 467899999999999999999999999976 7888887754211 111112335666553211 100 0112222
Q ss_pred HHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHH
Q 010472 297 MVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDE 372 (509)
Q Consensus 297 ~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~ 372 (509)
++..+ ......+.+.+..++|.+ +....+..|||||+|| ++||+||+.+|.++ ||+|||+.
T Consensus 105 ~~~~~----------~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qr----v~la~al~~~p~lllLDEPt~~LD~~ 169 (490)
T PRK10938 105 IIQDE----------VKDPARCEQLAQQFGITA-LLDRRFKYLSTGETRK----TLLCQALMSEPDLLILDEPFDGLDVA 169 (490)
T ss_pred hcccc----------hhHHHHHHHHHHHcCCHh-hhhCCcccCCHHHHHH----HHHHHHHHcCCCEEEEcCCcccCCHH
Confidence 22111 011223444455556765 5677889999999999 99999999999998 99999999
Q ss_pred HH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 373 TR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 373 ~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
.+ .+.++|+++.+.+.+++..+|++......++.+.+++.|+++..++.+
T Consensus 170 ~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 220 (490)
T PRK10938 170 SRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGERE 220 (490)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99 999999999765566777889988888777888888888887765443
No 275
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.77 E-value=5.3e-19 Score=177.79 Aligned_cols=195 Identities=10% Similarity=0.047 Sum_probs=139.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
.+.+|++++|+|+||+|||||+++|+|+.. .|.+.+.|..... ....++..++|+++...+|+. +..+++...
T Consensus 26 ~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~---tv~~nl~~~-- 100 (275)
T cd03289 26 SISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG---TFRKNLDPY-- 100 (275)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchh---hHHHHhhhc--
Confidence 578999999999999999999999999987 8999999965432 112345678999888777652 556665311
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCC-----------CCccccCCCchHHHHHHHHHHcCCce----eCCC
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKP-----------KPYESQSRPPLALELLRAYCASRGYV----ASSG 368 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~-----------LSgGq~QR~~~~~~La~ALa~~p~lL----PtsG 368 (509)
..... +. +.+.+..++|.. +....|.. ||+||+|| +.||||++.+|+++ ||++
T Consensus 101 --~~~~~--~~---~~~~l~~~gL~~-~~~~~p~~l~~~~~~~g~~LS~G~~qr----l~LaRall~~p~illlDEpts~ 168 (275)
T cd03289 101 --GKWSD--EE---IWKVAEEVGLKS-VIEQFPGQLDFVLVDGGCVLSHGHKQL----MCLARSVLSKAKILLLDEPSAH 168 (275)
T ss_pred --cCCCH--HH---HHHHHHHcCCHH-HHHhCcccccceecCCCCCCCHHHHHH----HHHHHHHhcCCCEEEEECcccc
Confidence 01111 12 222333345655 44555554 99999999 99999999999998 9999
Q ss_pred CCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhccCC
Q 010472 369 LPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDDLS 445 (509)
Q Consensus 369 LD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (509)
||+.++ .+..+|+.+..+ .+++...|.+..... ++.+++++.|++++.++.+..-.. . ..+..++.+..
T Consensus 169 LD~~~~~~l~~~l~~~~~~-~tii~isH~~~~i~~-~dri~vl~~G~i~~~g~~~~l~~~-~-----~~~~~~~~~~~ 238 (275)
T cd03289 169 LDPITYQVIRKTLKQAFAD-CTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKLLNE-K-----SHFKQAISPSD 238 (275)
T ss_pred CCHHHHHHHHHHHHHhcCC-CEEEEEECCHHHHHh-CCEEEEecCCeEeecCCHHHHhhC-c-----HHHHHHHhhcc
Confidence 999999 999999987665 556777777766665 667788888898887776444332 1 45666666554
No 276
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=99.77 E-value=7.1e-18 Score=166.99 Aligned_cols=212 Identities=25% Similarity=0.295 Sum_probs=141.4
Q ss_pred cCccccc-HHHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHHHHHHHHHHhc
Q 010472 62 LTPFEKN-LDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDH 140 (509)
Q Consensus 62 lt~fE~n-le~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~ 140 (509)
.+.|--. -..-|++...+..+|+||+|.|||.||++|++.+++++. .|+.|||+||+||+++.....-.+||+.+
T Consensus 26 ~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~----~k~riiVlNK~DLad~~~~k~~iq~~~~~ 101 (335)
T KOG2485|consen 26 RRWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLP----PKPRIIVLNKMDLADPKEQKKIIQYLEWQ 101 (335)
T ss_pred cccCchHHHHHHHHHHhhcccccEEEEeeccccCCccccHHHHHhcC----CCceEEEEecccccCchhhhHHHHHHHhh
Confidence 4566544 357889999999999999999999999999999988764 78999999999999977777888999887
Q ss_pred CCeEEEe-ehhhhHHhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCccccc
Q 010472 141 DILFVFW-SAKAASAALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVD 219 (509)
Q Consensus 141 gi~~if~-Sa~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~~~~~~~~ 219 (509)
+....++ ++.... .. +...++..+....+++...
T Consensus 102 ~~~~~~~~~c~~~~----~~-----------------------~v~~l~~il~~~~~~l~r~------------------ 136 (335)
T KOG2485|consen 102 NLESYIKLDCNKDC----NK-----------------------QVSPLLKILTILSEELVRF------------------ 136 (335)
T ss_pred cccchhhhhhhhhh----hh-----------------------ccccHHHHHHHHHHHHHHh------------------
Confidence 5543322 221100 00 0112332222222222111
Q ss_pred ccccCccCCCCcEEEEEecCCCCHhHHHHHHhcCC----c-ceEEeeCCcccccce-eee--cCeEEEEeCCCccCCCCc
Q 010472 220 ESFAGNVAPKNVIVGFVGYPNVGKSSTINALVGQK----R-TGVTSTPGKTKHFQT-LII--SEKLVLCDCPGLVFPSFS 291 (509)
Q Consensus 220 ~~~~~~~i~~g~~vglvG~nGaGKSTLln~L~G~~----~-~g~~~~~G~t~~~~~-~~~--~~~i~l~d~pg~~~p~~~ 291 (509)
..+.+.+-.+.|||.||+|||||||++.... + ..++..+|.|+.... +.+ +..++++|+||++.|+..
T Consensus 137 ----irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~ 212 (335)
T KOG2485|consen 137 ----IRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIV 212 (335)
T ss_pred ----hcccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCC
Confidence 1223456789999999999999999886532 1 456778898877655 222 456899999999999886
Q ss_pred ccHH--HHHHhccCCcchhhhHHHHHHHHHHhCCccch
Q 010472 292 ISRY--DMVASGVLPIDRMTEHRQAVQVVANRVPRHVI 327 (509)
Q Consensus 292 ~~~~--e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L 327 (509)
..+. .++++|+... ..-.....++++..+++..+.
T Consensus 213 ~~e~~lKLAL~g~Vkd-~~V~~~~~adylL~~lN~~~~ 249 (335)
T KOG2485|consen 213 DVEDGLKLALCGLVKD-HLVGEETIADYLLYLLNSHSD 249 (335)
T ss_pred CHHHhhhhhhcccccc-cccCHHHHHHHHHHHHhccCc
Confidence 4332 3456666543 222334455666666655443
No 277
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.77 E-value=5.9e-19 Score=166.09 Aligned_cols=146 Identities=14% Similarity=0.113 Sum_probs=111.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||+|||||+++|+|+.. .|.+.+.|..........+..++|+++...+++ . +..+++
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~--tv~~~i----- 95 (178)
T cd03247 24 ELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-T--TLRNNL----- 95 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-c--cHHHhh-----
Confidence 578999999999999999999999999976 799999886432111123445777776544432 1 222211
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
+..||+||+|| +.||+|++.+|+++ |++|||...+ .+.+
T Consensus 96 --------------------------------~~~LS~G~~qr----v~laral~~~p~~lllDEP~~~LD~~~~~~l~~ 139 (178)
T cd03247 96 --------------------------------GRRFSGGERQR----LALARILLQDAPIVLLDEPTVGLDPITERQLLS 139 (178)
T ss_pred --------------------------------cccCCHHHHHH----HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHH
Confidence 56799999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhcCCccEEEcCCCCChhhccchhhHhhccccccc
Q 010472 379 ILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHE 417 (509)
Q Consensus 379 lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~ 417 (509)
+|+++.++ .+++...|+....+. ++.+..+..|++++
T Consensus 140 ~l~~~~~~-~tii~~sh~~~~~~~-~d~~~~l~~g~i~~ 176 (178)
T cd03247 140 LIFEVLKD-KTLIWITHHLTGIEH-MDKILFLENGKIIM 176 (178)
T ss_pred HHHHHcCC-CEEEEEecCHHHHHh-CCEEEEEECCEEEe
Confidence 99998664 455666677777765 56777777777764
No 278
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.76 E-value=2.1e-19 Score=169.43 Aligned_cols=149 Identities=13% Similarity=0.060 Sum_probs=109.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc-eeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ-TLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~-~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
.+.+|++++|+|+||+|||||+++|+|+.+ .|.+.+.|...... .......++|+++
T Consensus 21 ~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q-------------------- 80 (180)
T cd03214 21 SIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ-------------------- 80 (180)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH--------------------
Confidence 467899999999999999999999999976 78888777532110 0000001111111
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHH
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AAR 377 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~ 377 (509)
.+..+++.+ +....+..||+||+|| ++||+|++.+|.++ |++|||+.++ .+.
T Consensus 81 ------------------~l~~~gl~~-~~~~~~~~LS~G~~qr----l~laral~~~p~llllDEP~~~LD~~~~~~~~ 137 (180)
T cd03214 81 ------------------ALELLGLAH-LADRPFNELSGGERQR----VLLARALAQEPPILLLDEPTSHLDIAHQIELL 137 (180)
T ss_pred ------------------HHHHcCCHh-HhcCCcccCCHHHHHH----HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 222334544 4456678899999999 99999999999998 9999999999 999
Q ss_pred HHHHHhhcC-CccEEEcCCCCChhhccchhhHhhccccccc
Q 010472 378 IILKDFIDG-KLPHFEMPPGMSHEEVGMEDTQASSLLELHE 417 (509)
Q Consensus 378 ~lLkd~~~g-kl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~ 417 (509)
.+|+.+.+. ...++...|.+.....+++.+.+++.|.+.+
T Consensus 138 ~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 178 (180)
T cd03214 138 ELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVA 178 (180)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999998763 4566777788888766666777777777653
No 279
>PLN03211 ABC transporter G-25; Provisional
Probab=99.76 E-value=1.7e-18 Score=193.29 Aligned_cols=186 Identities=13% Similarity=0.124 Sum_probs=133.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc----ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR----TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~----~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
.+.+|+++||+|+||||||||+++|+|... .|.+.++|...... ....++|+.|...+++.+ ++.+++...
T Consensus 90 ~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~---~~~~i~yv~Q~~~l~~~l--TV~E~l~~~ 164 (659)
T PLN03211 90 MASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQ---ILKRTGFVTQDDILYPHL--TVRETLVFC 164 (659)
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchh---hccceEEECcccccCCcC--CHHHHHHHH
Confidence 478999999999999999999999999864 58899999764321 234689999988888877 455555432
Q ss_pred cC-Cc-chhhhHHHHHHHHHHhCCccchhhHh----hccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCH
Q 010472 302 VL-PI-DRMTEHRQAVQVVANRVPRHVIENVC----KINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPD 371 (509)
Q Consensus 302 ~~-~~-~~~~~~~~~~~~i~~~l~~~~L~~~~----~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~ 371 (509)
.. .. ... ...+..+.+.+.+..++|.+.. .......|||||+|| +.||++|+.+|.++ ||+|||.
T Consensus 165 a~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqR----v~ia~aL~~~P~iLlLDEPtsgLD~ 239 (659)
T PLN03211 165 SLLRLPKSL-TKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKR----VSIAHEMLINPSLLILDEPTSGLDA 239 (659)
T ss_pred HHhCCCCCC-CHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhH----HHHHHHHHhCCCEEEEeCCCCCcCH
Confidence 21 10 111 1112223344444445565421 133466799999999 99999999999998 9999999
Q ss_pred HHH-HHHHHHHHhhcCCccEEEcCCCCCh-hhccchhhHhhcccccccCCCC
Q 010472 372 ETR-AARIILKDFIDGKLPHFEMPPGMSH-EEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 372 ~~r-~~~~lLkd~~~gkl~~~~~pp~~~~-~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
.++ .+.++|+++.+.+.+++...|..+. ...+++.+.++..|+++..++.
T Consensus 240 ~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~ 291 (659)
T PLN03211 240 TAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKG 291 (659)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCH
Confidence 999 9999999997655566777777774 4555666777777888776554
No 280
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=1.1e-18 Score=166.24 Aligned_cols=152 Identities=14% Similarity=0.110 Sum_probs=113.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCC----cceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQK----RTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~----~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
++.+|++++|+|+||+|||||+++|+|.. ..|.+.+.|.... ......++++.+...+++.+ +..+++..+
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~---~~~~~~i~~~~q~~~~~~~~--tv~~~l~~~ 103 (192)
T cd03232 29 YVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD---KNFQRSTGYVEQQDVHSPNL--TVREALRFS 103 (192)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH---HHhhhceEEecccCccccCC--cHHHHHHHH
Confidence 46789999999999999999999999974 2888988886543 12334677877755555554 344444321
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
. . . ..||+||+|| +.||+|++.+|.++ |++|||..++ .+
T Consensus 104 ~---------------~------------~-----~~LSgGe~qr----v~la~al~~~p~vlllDEP~~~LD~~~~~~l 147 (192)
T cd03232 104 A---------------L------------L-----RGLSVEQRKR----LTIGVELAAKPSILFLDEPTSGLDSQAAYNI 147 (192)
T ss_pred H---------------H------------H-----hcCCHHHhHH----HHHHHHHhcCCcEEEEeCCCcCCCHHHHHHH
Confidence 0 0 0 0799999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhcCCccEEEcCCCCCh-hhccchhhHhhcc-cccccC
Q 010472 377 RIILKDFIDGKLPHFEMPPGMSH-EEVGMEDTQASSL-LELHES 418 (509)
Q Consensus 377 ~~lLkd~~~gkl~~~~~pp~~~~-~~~~~~~~~~~~~-~~~~~~ 418 (509)
+.+|+.+.+.+.+++..+|+... ...+++.+.+++. |++++.
T Consensus 148 ~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~ 191 (192)
T cd03232 148 VRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYF 191 (192)
T ss_pred HHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeC
Confidence 99999987655667777777763 3344455666665 777653
No 281
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.76 E-value=2.2e-18 Score=164.59 Aligned_cols=160 Identities=9% Similarity=-0.059 Sum_probs=112.5
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||+|||||+++|+|... .|.+.+.|...... . ...+.++.+...+++.+ ++.+++.....
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~--~-~~~~~~~~~~~~~~~~~--tv~~~l~~~~~ 96 (195)
T PRK13541 22 TFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNI--A-KPYCTYIGHNLGLKLEM--TVFENLKFWSE 96 (195)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChh--h-hhhEEeccCCcCCCccC--CHHHHHHHHHH
Confidence 467899999999999999999999999976 78999988654211 1 22356666543333444 55565543221
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
.. ..... +.+.+..+++.. +..+.+..||+||+|| +.||+|++.+|.++ |++|||+.++ .+..
T Consensus 97 ~~----~~~~~---~~~~l~~~~l~~-~~~~~~~~LS~G~~~r----l~la~al~~~p~~lllDEP~~~LD~~~~~~l~~ 164 (195)
T PRK13541 97 IY----NSAET---LYAAIHYFKLHD-LLDEKCYSLSSGMQKI----VAIARLIACQSDLWLLDEVETNLSKENRDLLNN 164 (195)
T ss_pred hc----ccHHH---HHHHHHHcCCHh-hhccChhhCCHHHHHH----HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 10 01112 223333344554 4566788999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhcCCccEEEcCCCCChhhc
Q 010472 379 ILKDFIDGKLPHFEMPPGMSHEEV 402 (509)
Q Consensus 379 lLkd~~~gkl~~~~~pp~~~~~~~ 402 (509)
+|+...+...+++...|.....+.
T Consensus 165 ~l~~~~~~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 165 LIVMKANSGGIVLLSSHLESSIKS 188 (195)
T ss_pred HHHHHHhCCCEEEEEeCCccccch
Confidence 998765555566667777665544
No 282
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.76 E-value=6.3e-19 Score=191.17 Aligned_cols=189 Identities=9% Similarity=0.048 Sum_probs=132.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce--eeecCeEEEEeCCC---ccCCCCccc---HH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT--LIISEKLVLCDCPG---LVFPSFSIS---RY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~--~~~~~~i~l~d~pg---~~~p~~~~~---~~ 295 (509)
.+.+|+++||+|+||||||||+++|+|+.+ .|.+.+.|....... ...+..++|+++.. .+|+.++.. ..
T Consensus 270 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~ 349 (491)
T PRK10982 270 DLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLI 349 (491)
T ss_pred EEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheeh
Confidence 578999999999999999999999999986 799999886542211 11234577777652 245655321 11
Q ss_pred HHHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCH
Q 010472 296 DMVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPD 371 (509)
Q Consensus 296 e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~ 371 (509)
+.+........ ..........+.+.+..+++...+....+..|||||+|| +.||+|++.+|.+| ||+|||+
T Consensus 350 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr----v~la~al~~~p~illLDEPt~gLD~ 424 (491)
T PRK10982 350 SNIRNYKNKVG-LLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQK----VIIGRWLLTQPEILMLDEPTRGIDV 424 (491)
T ss_pred hhhhhhccccc-ccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHH----HHHHHHHhcCCCEEEEcCCCcccCh
Confidence 11211100000 000011112233344444553213467788999999999 99999999999998 9999999
Q ss_pred HHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCC
Q 010472 372 ETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESD 419 (509)
Q Consensus 372 ~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~ 419 (509)
.++ .+..+|+.+.+.+.+++..+|++.....+++.+.+++.|+++...
T Consensus 425 ~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~ 473 (491)
T PRK10982 425 GAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIV 473 (491)
T ss_pred hHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEE
Confidence 999 999999998776678999999999998888888888888887533
No 283
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.76 E-value=1.1e-18 Score=167.27 Aligned_cols=158 Identities=11% Similarity=0.052 Sum_probs=117.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCC--c--ceEEeeCCcccccce--eeecCeEEEEeCCCccCCCCcccHHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQK--R--TGVTSTPGKTKHFQT--LIISEKLVLCDCPGLVFPSFSISRYDMVA 299 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~--~--~g~~~~~G~t~~~~~--~~~~~~i~l~d~pg~~~p~~~~~~~e~v~ 299 (509)
++.+|++++|+|+||+|||||+++|+|.. . .|.+.+.|....... ...+..++|+++...+++.++ ..+++
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~--~~~~l- 98 (200)
T cd03217 22 TIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVK--NADFL- 98 (200)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCcc--HHHHH-
Confidence 47799999999999999999999999983 2 799999986543211 111234777777655544331 11111
Q ss_pred hccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-
Q 010472 300 SGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR- 374 (509)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r- 374 (509)
...+..||+||+|| +.||+|++.+|.++ ||+|||..++
T Consensus 99 ---------------------------------~~~~~~LS~G~~qr----v~laral~~~p~illlDEPt~~LD~~~~~ 141 (200)
T cd03217 99 ---------------------------------RYVNEGFSGGEKKR----NEILQLLLLEPDLAILDEPDSGLDIDALR 141 (200)
T ss_pred ---------------------------------hhccccCCHHHHHH----HHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 11235799999999 99999999999998 9999999999
Q ss_pred HHHHHHHHhhcCCccEEEcCCCCChhhc-cchhhHhhcccccccCCCCcc
Q 010472 375 AARIILKDFIDGKLPHFEMPPGMSHEEV-GMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 375 ~~~~lLkd~~~gkl~~~~~pp~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 423 (509)
.+..+|+++.+.+.+++...|.+...+. +++.+.+++.|++.+.++.+.
T Consensus 142 ~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 191 (200)
T cd03217 142 LVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKEL 191 (200)
T ss_pred HHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccHHH
Confidence 9999999997645566667777777775 566777777888876654443
No 284
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.76 E-value=4e-19 Score=172.98 Aligned_cols=188 Identities=16% Similarity=0.110 Sum_probs=129.7
Q ss_pred ccCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEE-EeCCCccCCCCcccHHHHHHhc
Q 010472 225 NVAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVL-CDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 225 ~~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l-~d~pg~~~p~~~~~~~e~v~~g 301 (509)
-++++|+++|++|+|||||||+|++|+|++. +|.+.+.|..........-+.+++ +-|---++..+....-..+...
T Consensus 45 f~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~ 124 (325)
T COG4586 45 FEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKL 124 (325)
T ss_pred eecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHH
Confidence 3589999999999999999999999999987 899999996532211111111111 1111111111111111112222
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
++.+.. ....+....+.+.+ +|+. +.......||.||+.| ++||.||.++|.+| ||-|||...+ ++
T Consensus 125 Iy~Ipd-~~F~~r~~~l~eiL---dl~~-~lk~~vr~LSlGqRmr----aeLaaaLLh~p~VLfLDEpTvgLDV~aq~~i 195 (325)
T COG4586 125 IYEIPD-DEFAERLDFLTEIL---DLEG-FLKWPVRKLSLGQRMR----AELAAALLHPPKVLFLDEPTVGLDVNAQANI 195 (325)
T ss_pred HHhCCH-HHHHHHHHHHHHHh---cchh-hhhhhhhhccchHHHH----HHHHHHhcCCCcEEEecCCccCcchhHHHHH
Confidence 222211 11123334444444 4555 4456677899999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 377 RIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 377 ~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
+++|+++.+ ...+++.++|+|++-+..|+.+.....|+++.+++-
T Consensus 196 r~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l 241 (325)
T COG4586 196 REFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTL 241 (325)
T ss_pred HHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccH
Confidence 999999976 568888999999999999999999999999886544
No 285
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.75 E-value=1.5e-18 Score=162.62 Aligned_cols=141 Identities=13% Similarity=0.078 Sum_probs=106.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc-eeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ-TLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~-~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
.+.+|++++|+|+||+|||||+++|+|+.+ .|.+.+.|...... .......++|+.+...+|+. +..+++
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~---tv~~~l---- 96 (173)
T cd03246 24 SIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG---SIAENI---- 96 (173)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccC---cHHHHC----
Confidence 467899999999999999999999999976 78999988653211 11223456777665433331 222111
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHH
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AAR 377 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~ 377 (509)
||+||+|| +.||+||+.+|+++ |++|||+.++ .+.
T Consensus 97 ------------------------------------LS~G~~qr----v~la~al~~~p~~lllDEPt~~LD~~~~~~l~ 136 (173)
T cd03246 97 ------------------------------------LSGGQRQR----LGLARALYGNPRILVLDEPNSHLDVEGERALN 136 (173)
T ss_pred ------------------------------------cCHHHHHH----HHHHHHHhcCCCEEEEECCccccCHHHHHHHH
Confidence 99999999 99999999999998 9999999999 999
Q ss_pred HHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccc
Q 010472 378 IILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLE 414 (509)
Q Consensus 378 ~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~ 414 (509)
.+|+++.+.+..++...|+....+. ++.+.++..|+
T Consensus 137 ~~l~~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~ 172 (173)
T cd03246 137 QAIAALKAAGATRIVIAHRPETLAS-ADRILVLEDGR 172 (173)
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHh-CCEEEEEECCC
Confidence 9999997645567777777777765 55555555554
No 286
>PRK13409 putative ATPase RIL; Provisional
Probab=99.75 E-value=1.8e-18 Score=190.83 Aligned_cols=165 Identities=12% Similarity=0.015 Sum_probs=125.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|+++||+|+||+|||||+++|+|+.+ .|.+.+. ..++|++|....++.+ ++.+++..+..
T Consensus 361 ~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~------------~~i~y~~Q~~~~~~~~--tv~e~l~~~~~ 426 (590)
T PRK13409 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE------------LKISYKPQYIKPDYDG--TVEDLLRSITD 426 (590)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe------------eeEEEecccccCCCCC--cHHHHHHHHhh
Confidence 468999999999999999999999999986 5666553 1467777754444444 66666654321
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
.. .... .+.+.+..++|.. +..+.+..|||||+|| ++||+||+.+|.+| ||+|||..++ .+..
T Consensus 427 ~~----~~~~---~~~~~L~~l~l~~-~~~~~~~~LSGGe~QR----vaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~ 494 (590)
T PRK13409 427 DL----GSSY---YKSEIIKPLQLER-LLDKNVKDLSGGELQR----VAIAACLSRDADLYLLDEPSAHLDVEQRLAVAK 494 (590)
T ss_pred hc----ChHH---HHHHHHHHCCCHH-HHhCCcccCCHHHHHH----HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 11 1111 2334455556765 6678899999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhc-CCccEEEcCCCCChhhccchhhHhhccccccc
Q 010472 379 ILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHE 417 (509)
Q Consensus 379 lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~ 417 (509)
+|+++.. .+.+++..+|++....+.++.+.++++ .+..
T Consensus 495 ~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~ 533 (590)
T PRK13409 495 AIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGK 533 (590)
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-ccee
Confidence 9999965 467788889999988887777888876 4443
No 287
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.75 E-value=1.4e-18 Score=173.01 Aligned_cols=186 Identities=14% Similarity=0.046 Sum_probs=125.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
.+.+|++++|+|+||+|||||+++|+|+.+ .|.+.+.|..... .....+..++|+.+...+|+ . +..+++....
T Consensus 43 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~-~--tv~~nl~~~~ 119 (257)
T cd03288 43 YIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFS-G--SIRFNLDPEC 119 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccc-c--HHHHhcCcCC
Confidence 477999999999999999999999999976 8999999875422 11123456888888665554 2 4444432210
Q ss_pred CCcchhhhHHHHHH--HHHHhCCcc--chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 303 LPIDRMTEHRQAVQ--VVANRVPRH--VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 303 ~~~~~~~~~~~~~~--~i~~~l~~~--~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
.... ........ .+.+.+..+ ++.. .....+..||+|++|| ++||+||+.+|+++ |++|||+..+
T Consensus 120 -~~~~-~~~~~~l~~~~l~~~~~~~~~~l~~-~~~~~~~~LS~G~~qr----l~laral~~~p~llllDEPt~gLD~~~~ 192 (257)
T cd03288 120 -KCTD-DRLWEALEIAQLKNMVKSLPGGLDA-VVTEGGENFSVGQRQL----FCLARAFVRKSSILIMDEATASIDMATE 192 (257)
T ss_pred -CCCH-HHHHHHHHHhCcHHHHhhcccccCc-EeccCCCcCCHHHHHH----HHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 0000 00001100 011111111 2222 2233456899999999 99999999999998 9999999999
Q ss_pred -HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 375 -AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 375 -~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
.+..+|+.+..+ ..++...|.+..... ++.+.++..|++++.++.+.
T Consensus 193 ~~l~~~l~~~~~~-~tiii~sh~~~~~~~-~dri~~l~~G~i~~~g~~~~ 240 (257)
T cd03288 193 NILQKVVMTAFAD-RTVVTIAHRVSTILD-ADLVLVLSRGILVECDTPEN 240 (257)
T ss_pred HHHHHHHHHhcCC-CEEEEEecChHHHHh-CCEEEEEECCEEEEeCCHHH
Confidence 899999988665 566777777777776 66777777888877655443
No 288
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.75 E-value=1.9e-18 Score=175.72 Aligned_cols=213 Identities=12% Similarity=0.008 Sum_probs=164.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-------ceEEeeCCccccc-ce---eee-cCeEEEEeCCCccCCCCccc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------TGVTSTPGKTKHF-QT---LII-SEKLVLCDCPGLVFPSFSIS 293 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------~g~~~~~G~t~~~-~~---~~~-~~~i~l~d~pg~~~p~~~~~ 293 (509)
++..|++++|||.+|||||-..+.++|+++ +|.+.+.|.+.-. .. ..+ ...|++++|..+.--+.--+
T Consensus 32 ~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~t 111 (534)
T COG4172 32 DIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHT 111 (534)
T ss_pred eecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhH
Confidence 477899999999999999999999999976 5788888876321 11 112 34688888866542221112
Q ss_pred HHHHHHhccCCcchhhhHHHHHHHHHHhCCccchhh--HhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCC
Q 010472 294 RYDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIEN--VCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASS 367 (509)
Q Consensus 294 ~~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~--~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----Pts 367 (509)
....+...+.. ........+..++.+++..+++.+ .....+|++|||||+|| +.||.||+.+|++| ||.
T Consensus 112 Ig~Qi~E~l~~-Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQR----VMIAMALan~P~lLIADEPTT 186 (534)
T COG4172 112 IGKQLAEVLRL-HRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQR----VMIAMALANEPDLLIADEPTT 186 (534)
T ss_pred HHHHHHHHHHH-HhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhH----HHHHHHHcCCCCeEeecCCcc
Confidence 22333332211 111122355667777777777742 24467899999999999 99999999999999 999
Q ss_pred CCCHHHH-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhccCC
Q 010472 368 GLPDETR-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDDLS 445 (509)
Q Consensus 368 GLD~~~r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (509)
+||...+ .+.++|+++.. -++.++..+|++.-....++++.+|+.|+++|.+.++..+.+..+ |+-..++++.+
T Consensus 187 ALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~~PqH----pYTr~Ll~aeP 262 (534)
T COG4172 187 ALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQH----PYTRKLLAAEP 262 (534)
T ss_pred hhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHhhCCCC----hHHHHHHhcCC
Confidence 9999999 99999999976 589999999999999999999999999999999999999987664 89999999866
Q ss_pred Cc
Q 010472 446 SF 447 (509)
Q Consensus 446 ~~ 447 (509)
+=
T Consensus 263 ~g 264 (534)
T COG4172 263 SG 264 (534)
T ss_pred CC
Confidence 43
No 289
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.75 E-value=1.5e-18 Score=161.23 Aligned_cols=131 Identities=11% Similarity=0.103 Sum_probs=101.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccccee--eecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTL--IISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~--~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
++.+|++++|+|+||+|||||+++|+|+.. .|.+.+.|........ .....++++++
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q------------------- 82 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ------------------- 82 (163)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe-------------------
Confidence 478999999999999999999999999986 7777777753321000 00111222111
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
||+||+|| +.||+|++.+|.++ |++|||..++ .+
T Consensus 83 -------------------------------------LS~G~~qr----l~laral~~~p~illlDEP~~~LD~~~~~~l 121 (163)
T cd03216 83 -------------------------------------LSVGERQM----VEIARALARNARLLILDEPTAALTPAEVERL 121 (163)
T ss_pred -------------------------------------cCHHHHHH----HHHHHHHhcCCCEEEEECCCcCCCHHHHHHH
Confidence 99999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccc
Q 010472 377 RIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELH 416 (509)
Q Consensus 377 ~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~ 416 (509)
..+|+++.+.+..++...|+......+++.+.+++.|+++
T Consensus 122 ~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~ 161 (163)
T cd03216 122 FKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161 (163)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999764556677788887776666677777777764
No 290
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.75 E-value=3.3e-18 Score=164.29 Aligned_cols=161 Identities=16% Similarity=0.076 Sum_probs=110.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++++|++++|+|+||+|||||+++|+|+.+ .|.+.+.| .++|+.+...+|+ . +..+++..+..
T Consensus 27 ~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g------------~i~~~~q~~~l~~-~--t~~enl~~~~~ 91 (204)
T cd03250 27 EVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------------SIAYVSQEPWIQN-G--TIRENILFGKP 91 (204)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC------------EEEEEecCchhcc-C--cHHHHhccCCC
Confidence 478999999999999999999999999976 78888877 4777777655553 3 66777765432
Q ss_pred CcchhhhHHHHHHHHHHhCCc------c--chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCH
Q 010472 304 PIDRMTEHRQAVQVVANRVPR------H--VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPD 371 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~------~--~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~ 371 (509)
. . . .....+.+.+.. . ++.. +....+..||+|++|| +.||+||+.+|.++ |++|||+
T Consensus 92 ~-~---~--~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~lS~G~~qr----v~laral~~~p~llllDEP~~~LD~ 160 (204)
T cd03250 92 F-D---E--ERYEKVIKACALEPDLEILPDGDLT-EIGEKGINLSGGQKQR----ISLARAVYSDADIYLLDDPLSAVDA 160 (204)
T ss_pred c-C---H--HHHHHHHHHcCcHHHHHhccCcccc-eecCCCCcCCHHHHHH----HHHHHHHhcCCCEEEEeCccccCCH
Confidence 1 1 1 111112222111 0 1111 2234467899999999 99999999999998 9999999
Q ss_pred HHH-HHHH-HHHHhhcCCccEEEcCCCCChhhccchhhHhhccc
Q 010472 372 ETR-AARI-ILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLL 413 (509)
Q Consensus 372 ~~r-~~~~-lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~ 413 (509)
..+ .+.. +++.+...+.+++...|....... ++.+..++.|
T Consensus 161 ~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~l~~G 203 (204)
T cd03250 161 HVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNG 203 (204)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEEEEeCC
Confidence 998 7776 567775545566666666666666 4455554443
No 291
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.75 E-value=4.5e-18 Score=163.76 Aligned_cols=168 Identities=13% Similarity=0.047 Sum_probs=122.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc-eeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ-TLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~-~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
.+.+|++++|+|+||+|||||+++|+|+.. .|.+.+.|...... ....+..++|+++...+|+ . +..+++....
T Consensus 30 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~--tv~~~l~~~~ 106 (207)
T cd03369 30 KVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-G--TIRSNLDPFD 106 (207)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccC-c--cHHHHhcccC
Confidence 467899999999999999999999999976 89999998754211 1123456888888766654 2 5556553211
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHH
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AAR 377 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~ 377 (509)
. . .. . .+.+.+. + ...+..||+|++|| ++||+|++.+|+++ |++|||+..+ .+.
T Consensus 107 -~---~-~~-~---~~~~~l~---~-----~~~~~~LS~G~~qr----v~laral~~~p~llllDEP~~~LD~~~~~~l~ 165 (207)
T cd03369 107 -E---Y-SD-E---EIYGALR---V-----SEGGLNLSQGQRQL----LCLARALLKRPRVLVLDEATASIDYATDALIQ 165 (207)
T ss_pred -C---C-CH-H---HHHHHhh---c-----cCCCCcCCHHHHHH----HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHH
Confidence 1 1 11 1 1222222 1 24567899999999 99999999999998 9999999999 999
Q ss_pred HHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCC
Q 010472 378 IILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESD 419 (509)
Q Consensus 378 ~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~ 419 (509)
.+|+++.+| .+++..+|....... ++.+.+++.|++.+.+
T Consensus 166 ~~l~~~~~~-~tiii~th~~~~~~~-~d~v~~l~~g~i~~~g 205 (207)
T cd03369 166 KTIREEFTN-STILTIAHRLRTIID-YDKILVMDAGEVKEYD 205 (207)
T ss_pred HHHHHhcCC-CEEEEEeCCHHHHhh-CCEEEEEECCEEEecC
Confidence 999998654 566667777777766 4677777778876544
No 292
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.74 E-value=2.4e-18 Score=197.92 Aligned_cols=190 Identities=14% Similarity=0.145 Sum_probs=153.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccccee--eecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTL--IISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~--~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
.+++|++.|+.|+|||||||++++|+|..+ .|.+.+.|.+...... .....++||+|.-.+++.++..+...++..
T Consensus 587 ~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~ar 666 (885)
T KOG0059|consen 587 AVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYAR 666 (885)
T ss_pred EecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHH
Confidence 578999999999999999999999999987 7899998887654332 356789999999999999977766555554
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
+..+.. .+....+..++ ..++|.. +.+...+.+|||+++| +.+|.|++.+|.++ |++|+||.+| .+
T Consensus 667 lrG~~~-~di~~~v~~ll---~~~~L~~-~~~~~~~~ySgG~kRk----Ls~aialig~p~vi~LDEPstGmDP~arr~l 737 (885)
T KOG0059|consen 667 LRGLPR-SDIGSAIEKLL---RLVGLGP-YANKQVRTYSGGNKRR----LSFAIALIGDPSVILLDEPSTGLDPKARRHL 737 (885)
T ss_pred HcCCCh-hHHHHHHHHHH---HHcCChh-hhccchhhCCCcchhh----HHHHHHHhcCCCEEEecCCCCCCCHHHHHHH
Confidence 332211 12223344444 4455776 7778889999999999 99999999999997 9999999999 99
Q ss_pred HHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 377 RIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 377 ~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
|++|+++++++-.++-++|.|+++|..|.++++|-.|++..-++.+..
T Consensus 738 W~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~L 785 (885)
T KOG0059|consen 738 WDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQEL 785 (885)
T ss_pred HHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHH
Confidence 999999987544999999999999999999999999999885555433
No 293
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.74 E-value=1.2e-17 Score=162.08 Aligned_cols=174 Identities=15% Similarity=0.028 Sum_probs=117.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce-----eeecCeEEEEeCCCccCCCCcccHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT-----LIISEKLVLCDCPGLVFPSFSISRYDMV 298 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~-----~~~~~~i~l~d~pg~~~p~~~~~~~e~v 298 (509)
.+.+|++++|+|+||+|||||+++|+|+.. .|.+.+.|....... ...+..++|+.+...+++ . +..+++
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~--t~~~nl 99 (218)
T cd03290 23 RIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLN-A--TVEENI 99 (218)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCcccc-c--cHHHHH
Confidence 467899999999999999999999999976 899999886543211 112346888888666553 3 566666
Q ss_pred HhccCCcchhhhHHHHHHHHHHhCCccchhhH-------hhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCC
Q 010472 299 ASGVLPIDRMTEHRQAVQVVANRVPRHVIENV-------CKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASS 367 (509)
Q Consensus 299 ~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~-------~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----Pts 367 (509)
..... .. . .....+.+.+........ .....+..||+||+|| ++||+|++.+|+++ |++
T Consensus 100 ~~~~~-~~---~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qr----v~laral~~~p~illlDEPt~ 169 (218)
T cd03290 100 TFGSP-FN---K--QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQR----ICVARALYQNTNIVFLDDPFS 169 (218)
T ss_pred hhcCc-CC---H--HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHH----HHHHHHHhhCCCEEEEeCCcc
Confidence 54321 11 1 111223333321110000 1124577899999999 99999999999998 999
Q ss_pred CCCHHHH-HHHH--HHHHhhcCCccEEEcCCCCChhhccchhhHhhccc
Q 010472 368 GLPDETR-AARI--ILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLL 413 (509)
Q Consensus 368 GLD~~~r-~~~~--lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~ 413 (509)
|||+.++ .+.+ +++.+.+.+.+++...|.+....+|+ .+.+++.|
T Consensus 170 ~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d-~i~~l~~G 217 (218)
T cd03290 170 ALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHAD-WIIAMKDG 217 (218)
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCC-EEEEecCC
Confidence 9999998 7777 77777665566677777776666654 44554443
No 294
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.74 E-value=1.6e-18 Score=193.19 Aligned_cols=190 Identities=17% Similarity=0.094 Sum_probs=137.6
Q ss_pred ccCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 225 NVAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 225 ~~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
-++++|+.+||||.||||||||+++|+|++. .|.+.++|...+. ....+++.++++.|...+| +.+..+|+..+
T Consensus 494 L~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf---~gSI~eNi~l~ 570 (709)
T COG2274 494 LEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLF---SGSIRENIALG 570 (709)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhh---cCcHHHHHhcC
Confidence 3689999999999999999999999999987 8999999988643 4456788999999999985 44788888877
Q ss_pred cCCcchhhhHHHHHHH--HHHhCCc--cchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHH
Q 010472 302 VLPIDRMTEHRQAVQV--VANRVPR--HVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDET 373 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~--i~~~l~~--~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~ 373 (509)
.-.. ...+..+++.. +.+.+.. .++.. ........|||||||| ++|||||.++|++| ||++||+.+
T Consensus 571 ~p~~-~~e~i~~A~~~ag~~~fI~~lP~gy~t-~v~E~G~~LSGGQrQr----lalARaLl~~P~ILlLDEaTSaLD~~s 644 (709)
T COG2274 571 NPEA-TDEEIIEAAQLAGAHEFIENLPMGYDT-PVGEGGANLSGGQRQR----LALARALLSKPKILLLDEATSALDPET 644 (709)
T ss_pred CCCC-CHHHHHHHHHHhCcHHHHHhccccccc-ccccCCCCCCHHHHHH----HHHHHHhccCCCEEEEeCcccccCHhH
Confidence 4322 11111111111 1111111 12211 1122345699999999 99999999999998 999999999
Q ss_pred H-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcccc
Q 010472 374 R-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEE 425 (509)
Q Consensus 374 r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (509)
. .+.+-|..+..|++.+ ...|..+.-.+| |.+.++++|++++.++.+...
T Consensus 645 E~~I~~~L~~~~~~~T~I-~IaHRl~ti~~a-drIiVl~~Gkiv~~gs~~ell 695 (709)
T COG2274 645 EAIILQNLLQILQGRTVI-IIAHRLSTIRSA-DRIIVLDQGKIVEQGSHEELL 695 (709)
T ss_pred HHHHHHHHHHHhcCCeEE-EEEccchHhhhc-cEEEEccCCceeccCCHHHHH
Confidence 9 9999999998886544 344555555554 556677889999888776543
No 295
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.74 E-value=3.5e-18 Score=189.24 Aligned_cols=182 Identities=13% Similarity=0.067 Sum_probs=130.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
.+++|++++|||++|||||||+++|+|.++ .|.+.++|.+... ....+++.++|++|...+|.. +..+|+..|.-
T Consensus 372 ~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~---TI~eNI~~g~~ 448 (588)
T PRK11174 372 TLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG---TLRDNVLLGNP 448 (588)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCc---CHHHHhhcCCC
Confidence 578999999999999999999999999986 7999999976432 223456789999999988654 78889988742
Q ss_pred CcchhhhHHHHHHHHHHhCCc--------cchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCH
Q 010472 304 PIDRMTEHRQAVQVVANRVPR--------HVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPD 371 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~--------~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~ 371 (509)
... + +.+..+++.... .++.. ........|||||+|| ++||||++++|+++ ||++||.
T Consensus 449 ~~~---~--eei~~al~~a~l~~~i~~lp~G~dT-~vge~G~~LSGGQrQR----ialARAll~~~~IliLDE~TSaLD~ 518 (588)
T PRK11174 449 DAS---D--EQLQQALENAWVSEFLPLLPQGLDT-PIGDQAAGLSVGQAQR----LALARALLQPCQLLLLDEPTASLDA 518 (588)
T ss_pred CCC---H--HHHHHHHHHhCHHHHHHhccccccc-ccccCCCCCCHHHHHH----HHHHHHHhcCCCEEEEeCCccCCCH
Confidence 111 1 122222222211 12222 1112245699999999 99999999999998 9999999
Q ss_pred HHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 372 ETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 372 ~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
.+. .+.+.|..+.+++++ +..+|..+.... +|.+.+++.|++++.++.+
T Consensus 519 ~te~~i~~~l~~~~~~~Tv-IiItHrl~~i~~-aD~Iivl~~G~i~e~G~~~ 568 (588)
T PRK11174 519 HSEQLVMQALNAASRRQTT-LMVTHQLEDLAQ-WDQIWVMQDGQIVQQGDYA 568 (588)
T ss_pred HHHHHHHHHHHHHhCCCEE-EEEecChHHHHh-CCEEEEEeCCeEeecCCHH
Confidence 999 888999988776654 444555555554 5566667788888766543
No 296
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.74 E-value=4.8e-18 Score=156.62 Aligned_cols=215 Identities=12% Similarity=0.080 Sum_probs=161.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeec-CeEEEEeCCC--ccCCCCcccHHHHHHh
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIIS-EKLVLCDCPG--LVFPSFSISRYDMVAS 300 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~-~~i~l~d~pg--~~~p~~~~~~~e~v~~ 300 (509)
.+..|.++||||.||||||||.++|+|... +|.+.++|....+.....+ ..+.+++|.. .+-|.+ ....++.
T Consensus 35 tL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl---~iGqiLd 111 (267)
T COG4167 35 TLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRL---RIGQILD 111 (267)
T ss_pred EecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhh---hhhhHhc
Confidence 467899999999999999999999999987 8999999988776554443 3455555532 233333 1223444
Q ss_pred ccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-H
Q 010472 301 GVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-A 375 (509)
Q Consensus 301 g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~ 375 (509)
+-+....-.+.....+.+.+.+..++|...+.+.+|..||.||+|| ++|||||+.+|.++ .-++||...| .
T Consensus 112 ~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQR----VaLARALIL~P~iIIaDeAl~~LD~smrsQ 187 (267)
T COG4167 112 FPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQR----VALARALILRPKIIIADEALASLDMSMRSQ 187 (267)
T ss_pred chhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHH----HHHHHHHhcCCcEEEehhhhhhccHHHHHH
Confidence 4333222223445566777777777876557777889999999999 99999999999998 6789999999 8
Q ss_pred HHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhccCCCc
Q 010472 376 ARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDDLSSF 447 (509)
Q Consensus 376 ~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (509)
+.++.-++.+ -++.|+...-.+---.-.++.+.+|..|+.+|++++.....+..++....-+|--|+.+..|
T Consensus 188 l~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P~~~~TkRlieShFg~~l~~ 260 (267)
T COG4167 188 LINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRLIESHFGEALTA 260 (267)
T ss_pred HHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCCccHHHHHHHHHHhccccCc
Confidence 9888888876 47778777777777788899999999999999999988887665544444455556554433
No 297
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=3.9e-18 Score=159.55 Aligned_cols=139 Identities=15% Similarity=0.104 Sum_probs=103.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++.+|++++|+|+||+|||||+++|+|+.+ .|.+.+.|..... .....+..++++++...+|+ . +..+++
T Consensus 24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~--t~~e~l---- 96 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-G--TIRENI---- 96 (171)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-c--hHHHHh----
Confidence 477999999999999999999999999976 7888888865321 11112345666655433322 1 111111
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHH
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AAR 377 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~ 377 (509)
||+||+|| +.||+|++.+|.++ |++|||...+ .+.
T Consensus 97 ------------------------------------LS~G~~~r----l~la~al~~~p~llllDEP~~gLD~~~~~~l~ 136 (171)
T cd03228 97 ------------------------------------LSGGQRQR----IAIARALLRDPPILILDEATSALDPETEALIL 136 (171)
T ss_pred ------------------------------------hCHHHHHH----HHHHHHHhcCCCEEEEECCCcCCCHHHHHHHH
Confidence 99999999 99999999999998 9999999999 999
Q ss_pred HHHHHhhcCCccEEEcCCCCChhhccchhhHhhccc
Q 010472 378 IILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLL 413 (509)
Q Consensus 378 ~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~ 413 (509)
.+|+.+.++ ..++...|++...+. ++.+.+++.|
T Consensus 137 ~~l~~~~~~-~tii~~sh~~~~~~~-~d~~~~l~~g 170 (171)
T cd03228 137 EALRALAKG-KTVIVIAHRLSTIRD-ADRIIVLDDG 170 (171)
T ss_pred HHHHHhcCC-CEEEEEecCHHHHHh-CCEEEEEcCC
Confidence 999999765 566666777777776 4455544443
No 298
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.74 E-value=6.5e-18 Score=163.76 Aligned_cols=169 Identities=9% Similarity=0.056 Sum_probs=116.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEe-eCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHh--
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTS-TPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVAS-- 300 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~-~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~-- 300 (509)
.+++|++++|+|+||||||||+++|+|+.. .|.+. +.|... . +.+...++|.+ +..+++..
T Consensus 9 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-----------~-~~~~~~l~~~l--tv~enl~~~~ 74 (213)
T PRK15177 9 VMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-----------P-LGANSFILPGL--TGEENARMMA 74 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-----------c-cccccccCCcC--cHHHHHHHHH
Confidence 477899999999999999999999999976 66664 444211 0 11123356666 44455433
Q ss_pred ccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-H
Q 010472 301 GVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-A 375 (509)
Q Consensus 301 g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~ 375 (509)
..+.. ........+... .++.. +....+..||+||+|| ++||+|++.+|.++ |++++|+..+ .
T Consensus 75 ~~~~~----~~~~~~~~~~~~---~~l~~-~~~~~~~~lS~G~~qr----v~la~al~~~p~llllDEP~~~lD~~~~~~ 142 (213)
T PRK15177 75 SLYGL----DGDEFSHFCYQL---TQLEQ-CYTDRVSEYSVTMKTH----LAFAINLLLPCRLYIADGKLYTGDNATQLR 142 (213)
T ss_pred HHcCC----CHHHHHHHHHHH---hChhH-HhhchHhhcCHHHHHH----HHHHHHHhcCCCEEEECCCCccCCHHHHHH
Confidence 22221 111112222222 34554 4456678899999999 99999999999997 9999999999 8
Q ss_pred HHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 376 ARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 376 ~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
+..+|....+++ +++...|.+...+.+++.+.++..|+++..++-
T Consensus 143 ~~~~l~~~~~~~-~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 187 (213)
T PRK15177 143 MQAALACQLQQK-GLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDL 187 (213)
T ss_pred HHHHHHHHhhCC-cEEEEECCHHHHHHhcCeeEEEECCeEEEeCCH
Confidence 888776544444 356678888888766777778888888865444
No 299
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.73 E-value=2.8e-17 Score=162.63 Aligned_cols=162 Identities=25% Similarity=0.272 Sum_probs=114.6
Q ss_pred ccccCcccccHHHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH-hcCCcEEEEEeCCCCCCHHH-HHHHHHH
Q 010472 59 KLVLTPFEKNLDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREI-DKYKRTLLLVNKADLLPFSV-RKRWAKY 136 (509)
Q Consensus 59 ~~~lt~fE~nle~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~-~~~K~~iLVlNK~DL~p~~~-~~~W~~y 136 (509)
+++...+|+--.+.|. .+.++|.+++|.|+++|.+++. .+++|+..+ ..+.+++||+||+||.+... ...|.++
T Consensus 17 ~~i~~i~eR~~~L~r~---~~~n~D~viiV~d~~~p~~s~~-~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~ 92 (245)
T TIGR00157 17 VYGGAIAERKNELTRP---IVANIDQIVIVSSAVLPELSLN-QLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDI 92 (245)
T ss_pred eEEEEEecccceEECc---ccccCCEEEEEEECCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHH
Confidence 3444445553333332 6889999999999999997664 466776544 35789999999999986544 3589999
Q ss_pred HHhcCCeEEEeehhhhHHhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcc
Q 010472 137 FKDHDILFVFWSAKAASAALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQ 216 (509)
Q Consensus 137 f~~~gi~~if~Sa~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~~~~~ 216 (509)
|.+.|+.+++.||+ .|. +.++|.+.+
T Consensus 93 ~~~~g~~v~~~SAk------tg~-----------------------gi~eLf~~l------------------------- 118 (245)
T TIGR00157 93 YRNIGYQVLMTSSK------NQD-----------------------GLKELIEAL------------------------- 118 (245)
T ss_pred HHHCCCeEEEEecC------Cch-----------------------hHHHHHhhh-------------------------
Confidence 98889888888885 222 233444322
Q ss_pred cccccccCccCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEee-CC----cccccceeeecCeEEEEeCCCccCCC
Q 010472 217 SVDESFAGNVAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTST-PG----KTKHFQTLIISEKLVLCDCPGLVFPS 289 (509)
Q Consensus 217 ~~~~~~~~~~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~-~G----~t~~~~~~~~~~~i~l~d~pg~~~p~ 289 (509)
.+.+++|+|+||||||||||.|.|... .|.+.. .| +|++.+.+.+ ....++||||+..+.
T Consensus 119 ------------~~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~~~~liDtPG~~~~~ 185 (245)
T TIGR00157 119 ------------QNRISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-HGGLIADTPGFNEFG 185 (245)
T ss_pred ------------cCCEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-CCcEEEeCCCccccC
Confidence 135889999999999999999999765 333332 23 5666666666 456899999998776
Q ss_pred Cc
Q 010472 290 FS 291 (509)
Q Consensus 290 ~~ 291 (509)
+.
T Consensus 186 l~ 187 (245)
T TIGR00157 186 LW 187 (245)
T ss_pred CC
Confidence 64
No 300
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.73 E-value=1.2e-17 Score=155.69 Aligned_cols=135 Identities=19% Similarity=0.110 Sum_probs=101.5
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||+|||||+++|+|+.. .|.+.+.|. ..++|+.+...++ .. +..+++..+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~----------~~i~~~~q~~~~~-~~--tv~~nl~~~-- 87 (166)
T cd03223 23 EIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG----------EDLLFLPQRPYLP-LG--TLREQLIYP-- 87 (166)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC----------ceEEEECCCCccc-cc--cHHHHhhcc--
Confidence 467899999999999999999999999976 688877652 3577777754432 22 444443211
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
.+..||+||+|| +.||+|++.+|+++ |++|||+..+ .+.+
T Consensus 88 -------------------------------~~~~LS~G~~~r----v~laral~~~p~~lllDEPt~~LD~~~~~~l~~ 132 (166)
T cd03223 88 -------------------------------WDDVLSGGEQQR----LAFARLLLHKPKFVFLDEATSALDEESEDRLYQ 132 (166)
T ss_pred -------------------------------CCCCCCHHHHHH----HHHHHHHHcCCCEEEEECCccccCHHHHHHHHH
Confidence 246799999999 99999999999998 9999999999 8999
Q ss_pred HHHHhhcCCccEEEcCCCCChhhccchhhHhhccc
Q 010472 379 ILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLL 413 (509)
Q Consensus 379 lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~ 413 (509)
+|+.+ + ..++..+|+.....+|++...+..+|
T Consensus 133 ~l~~~--~-~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 133 LLKEL--G-ITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred HHHHh--C-CEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 99887 3 44555666666666666555444333
No 301
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=6.8e-18 Score=184.82 Aligned_cols=172 Identities=16% Similarity=0.074 Sum_probs=124.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|. ..++++.|...+++.+ ++.+++..+..
T Consensus 23 ~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~~~~q~~~~~~~~--tv~e~l~~~~~ 90 (530)
T PRK15064 23 KFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN----------ERLGKLRQDQFAFEEF--TVLDTVIMGHT 90 (530)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----------CEEEEEeccCCcCCCC--cHHHHHHHhhH
Confidence 578999999999999999999999999976 688877662 2477888866666665 44555443221
Q ss_pred Cc-------------ch--hh---h------------HHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHH
Q 010472 304 PI-------------DR--MT---E------------HRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALEL 353 (509)
Q Consensus 304 ~~-------------~~--~~---~------------~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~L 353 (509)
.. .. .. . .......+.+.+..++|........+..|||||+|| ++|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qr----v~l 166 (530)
T PRK15064 91 ELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLR----VLL 166 (530)
T ss_pred HHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHH----HHH
Confidence 00 00 00 0 001112344555556665423345678999999999 999
Q ss_pred HHHHHHcCCce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccc
Q 010472 354 LRAYCASRGYV----ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELH 416 (509)
Q Consensus 354 a~ALa~~p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~ 416 (509)
|+||+.+|.+| ||+|||+.++ .+.++|++. +.+++...|++......++.+.+++.|+++
T Consensus 167 A~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~d~i~~l~~g~i~ 231 (530)
T PRK15064 167 AQALFSNPDILLLDEPTNNLDINTIRWLEDVLNER---NSTMIIISHDRHFLNSVCTHMADLDYGELR 231 (530)
T ss_pred HHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcceEEEEeCCEEE
Confidence 99999999998 9999999999 888888752 456777889988877777778888888884
No 302
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.73 E-value=9.7e-18 Score=187.55 Aligned_cols=189 Identities=14% Similarity=0.101 Sum_probs=139.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccccee-----eecCeEEEEeCCCccCCCCcccHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTL-----IISEKLVLCDCPGLVFPSFSISRYDMV 298 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~-----~~~~~i~l~d~pg~~~p~~~~~~~e~v 298 (509)
++.+|++++|+|+||+|||||+++|+|+.+ .|.+.++|........ ..+..++|+.+...+|+.+ +..+++
T Consensus 30 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~--tv~enl 107 (648)
T PRK10535 30 DIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHL--TAAQNV 107 (648)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCC--CHHHHH
Confidence 478999999999999999999999999987 7999999975432111 1135688998887788877 444555
Q ss_pred HhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 299 ASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 299 ~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
..+..... . ...+....+.+.+..++|.+ +....+..||+||+|| +.||+||+.+|+++ |++|||..++
T Consensus 108 ~~~~~~~~-~-~~~~~~~~~~~~l~~lgl~~-~~~~~~~~LS~Gq~qr----v~LAraL~~~P~lLllDEP~~gLD~~s~ 180 (648)
T PRK10535 108 EVPAVYAG-L-ERKQRLLRAQELLQRLGLED-RVEYQPSQLSGGQQQR----VSIARALMNGGQVILADEPTGALDSHSG 180 (648)
T ss_pred HHHHHHcC-C-CHHHHHHHHHHHHHHCCChh-hhcCCcccCCHHHHHH----HHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 43221100 0 11122233445555556766 5677889999999999 99999999999998 9999999999
Q ss_pred -HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 375 -AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 375 -~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
.+..+|+++.+....++...|.....+. ++.+..++.|++++.++.+..
T Consensus 181 ~~l~~ll~~l~~~g~tilivsH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~ 230 (648)
T PRK10535 181 EEVMAILHQLRDRGHTVIIVTHDPQVAAQ-AERVIEIRDGEIVRNPPAQEK 230 (648)
T ss_pred HHHHHHHHHHHhcCCEEEEECCCHHHHHh-CCEEEEEECCEEEeecCcccc
Confidence 9999999987645667778888887776 566777777888876666544
No 303
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.73 E-value=8.7e-18 Score=186.98 Aligned_cols=188 Identities=13% Similarity=0.077 Sum_probs=135.5
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-----ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHh
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-----TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVAS 300 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-----~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~ 300 (509)
.+++|++++|+|+|||||||||++|+|... .|.+.++|..... ...+..++|+.|...++|.+ ++.+++..
T Consensus 47 ~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~--~~~~~~i~yv~Q~~~~~~~l--TV~e~l~f 122 (617)
T TIGR00955 47 VAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA--KEMRAISAYVQQDDLFIPTL--TVREHLMF 122 (617)
T ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH--HHHhhhceeeccccccCccC--cHHHHHHH
Confidence 478999999999999999999999999865 4778888876532 12345688999988888887 55666654
Q ss_pred ccCC-cchhhhHHHHHHHHHHhCCccchhhHhhccCCC------CCCccccCCCchHHHHHHHHHHcCCce----eCCCC
Q 010472 301 GVLP-IDRMTEHRQAVQVVANRVPRHVIENVCKINLPK------PKPYESQSRPPLALELLRAYCASRGYV----ASSGL 369 (509)
Q Consensus 301 g~~~-~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~------~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGL 369 (509)
+... ........+....+.+.+..++|.+ ..+..++ .|||||+|| +.||++|+.+|.++ ||+||
T Consensus 123 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~~LSgGqrkR----vsia~aL~~~p~vlllDEPtsgL 197 (617)
T TIGR00955 123 QAHLRMPRRVTKKEKRERVDEVLQALGLRK-CANTRIGVPGRVKGLSGGERKR----LAFASELLTDPPLLFCDEPTSGL 197 (617)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHcCchh-cCcCccCCCCCCCCcCcchhhH----HHHHHHHHcCCCEEEeeCCCcch
Confidence 3211 1100011123334555555556665 3344443 599999999 99999999999998 99999
Q ss_pred CHHHH-HHHHHHHHhhcCCccEEEcCCCCC-hhhccchhhHhhcccccccCCCCc
Q 010472 370 PDETR-AARIILKDFIDGKLPHFEMPPGMS-HEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 370 D~~~r-~~~~lLkd~~~gkl~~~~~pp~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
|..++ .+...|+++...+.+++...|... +...+++.+.++.+|+++..++.+
T Consensus 198 D~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~ 252 (617)
T TIGR00955 198 DSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPD 252 (617)
T ss_pred hHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHH
Confidence 99999 999999999764455666677765 334455666777788888877654
No 304
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=5.1e-18 Score=180.70 Aligned_cols=189 Identities=15% Similarity=0.105 Sum_probs=133.3
Q ss_pred ccCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccc-cceeeecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 225 NVAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKH-FQTLIISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 225 ~~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~-~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
-++++|+.++|||+||||||||+++|+|..+ .|++.++|.+.. .....+++++.+++|.+++|+. +..+|+..+
T Consensus 342 ~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g---TireNi~l~ 418 (559)
T COG4988 342 LTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG---TIRENILLA 418 (559)
T ss_pred eEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccc---cHHHHhhcc
Confidence 3678999999999999999999999999988 899999998753 3334567789999999999765 677888776
Q ss_pred cCCcchhhhHHHHHH--HHHHhCCc-cchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 302 VLPIDRMTEHRQAVQ--VVANRVPR-HVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~--~i~~~l~~-~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
-..... .+..+..+ .+.+.++. .++...+ ......|||||+|| +++|||+..++.++ ||++||.++.
T Consensus 419 ~~~~s~-e~i~~al~~a~l~~~v~~p~GLdt~i-ge~G~~LSgGQ~QR----laLARAll~~~~l~llDEpTA~LD~etE 492 (559)
T COG4988 419 RPDASD-EEIIAALDQAGLLEFVPKPDGLDTVI-GEGGAGLSGGQAQR----LALARALLSPASLLLLDEPTAHLDAETE 492 (559)
T ss_pred CCcCCH-HHHHHHHHHhcHHHhhcCCCcccchh-ccCCCCCCHHHHHH----HHHHHHhcCCCCEEEecCCccCCCHhHH
Confidence 432110 01011111 11222221 2332211 12234599999999 99999999999987 9999999999
Q ss_pred -HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 375 -AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 375 -~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
.+.+.|.++.++++++ ..+|.+....-+|++ .+++.|++++.+..+..
T Consensus 493 ~~i~~~l~~l~~~ktvl-~itHrl~~~~~~D~I-~vld~G~l~~~g~~~~L 541 (559)
T COG4988 493 QIILQALQELAKQKTVL-VITHRLEDAADADRI-VVLDNGRLVEQGTHEEL 541 (559)
T ss_pred HHHHHHHHHHHhCCeEE-EEEcChHHHhcCCEE-EEecCCceeccCCHHHH
Confidence 9999999999886544 456776666666554 45566666665544333
No 305
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.72 E-value=8.8e-18 Score=185.84 Aligned_cols=184 Identities=16% Similarity=0.125 Sum_probs=130.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
.+++|+.++|+|+||+|||||+++|+|+.. .|.+.++|..... ....++..++|++|...+|+ .+..+|+..+.
T Consensus 365 ~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~---~Ti~~Ni~~~~ 441 (582)
T PRK11176 365 KIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN---DTIANNIAYAR 441 (582)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeec---chHHHHHhcCC
Confidence 578999999999999999999999999987 7999999976432 22234667999999988875 37788888764
Q ss_pred CCcchhhhHHHHHHHHHHhCCc--------cchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPR--------HVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~--------~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
.+. ..+ +.+..+++.... .++..... .....|||||+|| ++|||||+++|+++ ||++||
T Consensus 442 ~~~--~~~--~~i~~al~~~~l~~~i~~lp~Gldt~ig-~~g~~LSGGqrQR----i~LARall~~~~ililDEptsaLD 512 (582)
T PRK11176 442 TEQ--YSR--EQIEEAARMAYAMDFINKMDNGLDTVIG-ENGVLLSGGQRQR----IAIARALLRDSPILILDEATSALD 512 (582)
T ss_pred CCC--CCH--HHHHHHHHHhCcHHHHHhcccccCceeC-CCCCcCCHHHHHH----HHHHHHHHhCCCEEEEECccccCC
Confidence 221 111 122222222211 12221111 1234699999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
+.+. .+.+.|..+.++++++ ..+|....... ++.+.+++.|++++.++.+.
T Consensus 513 ~~t~~~i~~~l~~~~~~~tvI-~VtHr~~~~~~-~D~Ii~l~~g~i~e~g~~~~ 564 (582)
T PRK11176 513 TESERAIQAALDELQKNRTSL-VIAHRLSTIEK-ADEILVVEDGEIVERGTHAE 564 (582)
T ss_pred HHHHHHHHHHHHHHhCCCEEE-EEecchHHHHh-CCEEEEEECCEEEEeCCHHH
Confidence 9998 8999998887665443 33466655555 55556667788887666443
No 306
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.72 E-value=3.5e-18 Score=194.76 Aligned_cols=185 Identities=15% Similarity=0.154 Sum_probs=137.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccc-cceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKH-FQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~-~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
.+++|++++|||++||||||+++.|.+.+. .|.+.++|.... .+...++..++++.|.+.+| ..+..+|+..|.
T Consensus 375 ~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF---~~tI~eNI~~G~ 451 (1228)
T KOG0055|consen 375 KIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLF---ATTIRENIRYGK 451 (1228)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhh---cccHHHHHhcCC
Confidence 578999999999999999999999999987 899999998753 33344677899999988774 448899999885
Q ss_pred CCcchhhhHHHHHHH--HHHhCCccchhhHhh---ccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHH
Q 010472 303 LPIDRMTEHRQAVQV--VANRVPRHVIENVCK---INLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDET 373 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~--i~~~l~~~~L~~~~~---~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~ 373 (509)
-... ..+..++.+. +.+.+. .|.+-|. -....+|||||+|| ++|||||+++|++| ||++||+++
T Consensus 452 ~dat-~~~i~~a~k~ana~~fi~--~lp~g~~T~vge~g~qLSGGQKQR----IAIARalv~~P~ILLLDEaTSaLD~~s 524 (1228)
T KOG0055|consen 452 PDAT-REEIEEAAKAANAHDFIL--KLPDGYDTLVGERGVQLSGGQKQR----IAIARALVRNPKILLLDEATSALDAES 524 (1228)
T ss_pred Cccc-HHHHHHHHHHccHHHHHH--hhHHhhcccccCCCCCCChHHHHH----HHHHHHHHhCCCEEEecCcccccCHHH
Confidence 3311 1111111111 111111 1111121 12233599999999 99999999999998 999999999
Q ss_pred H-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 374 R-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 374 r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
. .+.+.|..+..|+ +.+...|.++.-+. +|.+++++.|+++|.+..+
T Consensus 525 e~~Vq~ALd~~~~gr-TTivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~ 572 (1228)
T KOG0055|consen 525 ERVVQEALDKASKGR-TTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHD 572 (1228)
T ss_pred HHHHHHHHHHhhcCC-eEEEEeeehhhhhc-cCEEEEEECCEEEEecCHH
Confidence 9 8999999999999 45566789998888 7788888999998866553
No 307
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.72 E-value=6.7e-18 Score=186.30 Aligned_cols=187 Identities=16% Similarity=0.133 Sum_probs=137.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccc-cceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKH-FQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~-~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
.+++|+++||||++|||||||+|.|+|++. .|.+.++|.... .....++..+++++|...+|. .+..+|+..|.
T Consensus 351 ~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~---~TI~~NI~~g~ 427 (567)
T COG1132 351 SIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS---GTIRENIALGR 427 (567)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeec---ccHHHHHhcCC
Confidence 478999999999999999999999999987 699999887643 344456778999999998865 47889998885
Q ss_pred CCcchhhhHHHHHHHH--HHhCCcc--chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 303 LPIDRMTEHRQAVQVV--ANRVPRH--VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i--~~~l~~~--~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
-.... .+..++.+.+ .+.+..+ ++.. .-......|||||+|| ++||||+..+|+++ ||+++|..+.
T Consensus 428 ~~at~-eei~~a~k~a~~~d~I~~lp~g~dt-~vge~G~~LSgGQrQr----laiARall~~~~ILILDEaTSalD~~tE 501 (567)
T COG1132 428 PDATD-EEIEEALKLANAHEFIANLPDGYDT-IVGERGVNLSGGQRQR----LAIARALLRNPPILILDEATSALDTETE 501 (567)
T ss_pred CCCCH-HHHHHHHHHhChHHHHHhCcccccc-eecCCCccCCHHHHHH----HHHHHHHhcCCCEEEEeccccccCHHhH
Confidence 32111 1111111111 1111111 2322 1122345799999999 99999999999998 9999999999
Q ss_pred -HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 375 -AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 375 -~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
.+.+.|..+.+++++++ ..|..+.... +|.+.+++.|++++.+..+.
T Consensus 502 ~~I~~~l~~l~~~rT~ii-IaHRlsti~~-aD~IiVl~~G~i~e~G~h~e 549 (567)
T COG1132 502 ALIQDALKKLLKGRTTLI-IAHRLSTIKN-ADRIIVLDNGRIVERGTHEE 549 (567)
T ss_pred HHHHHHHHHHhcCCEEEE-EeccHhHHHh-CCEEEEEECCEEEEecCHHH
Confidence 99999998888886666 8888877777 66667777777877665533
No 308
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.72 E-value=6.6e-17 Score=163.67 Aligned_cols=164 Identities=25% Similarity=0.241 Sum_probs=114.5
Q ss_pred ccccCcccccHHHHHHH-----HHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-cCCcEEEEEeCCCCCCHHHHHH
Q 010472 59 KLVLTPFEKNLDMWRQL-----WRVLERSDLIVMVVDARDPLFYRCPDLEAYAREID-KYKRTLLLVNKADLLPFSVRKR 132 (509)
Q Consensus 59 ~~~lt~fE~nle~wrql-----~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-~~K~~iLVlNK~DL~p~~~~~~ 132 (509)
+++...++|.-.++|.- .-++.++|++|+|+|+++|.++ ...+++|+..+. .++|+++|+||+||.+......
T Consensus 51 ~~i~~i~~R~~~l~R~~~~~~~~~i~anvD~vllV~d~~~p~~s-~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~ 129 (287)
T cd01854 51 GVIVRVLPRKNLLSRPAAGGREQVIAANVDQLVIVVSLNEPFFN-PRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEEL 129 (287)
T ss_pred EEEEEEECCCceEEccCCCCcceeEEEeCCEEEEEEEcCCCCCC-HHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHH
Confidence 34444455554444431 2358999999999999999832 246777775443 4789999999999998766667
Q ss_pred HHHHHHhcCCeEEEeehhhhHHhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 010472 133 WAKYFKDHDILFVFWSAKAASAALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGK 212 (509)
Q Consensus 133 W~~yf~~~gi~~if~Sa~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~ 212 (509)
|..++.+.|+.++++||+ ++. +.++|...|
T Consensus 130 ~~~~~~~~g~~v~~vSA~------~g~-----------------------gi~~L~~~L--------------------- 159 (287)
T cd01854 130 ELVEALALGYPVLAVSAK------TGE-----------------------GLDELREYL--------------------- 159 (287)
T ss_pred HHHHHHhCCCeEEEEECC------CCc-----------------------cHHHHHhhh---------------------
Confidence 888888888888888875 222 233443322
Q ss_pred CCcccccccccCccCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEee---C--CcccccceeeecCeEEEEeCCCc
Q 010472 213 SNVQSVDESFAGNVAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTST---P--GKTKHFQTLIISEKLVLCDCPGL 285 (509)
Q Consensus 213 ~~~~~~~~~~~~~~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~---~--G~t~~~~~~~~~~~i~l~d~pg~ 285 (509)
.+.+++++|+||||||||+|+|+|... .|.+.. . ++|.+.+...+.....++|+||+
T Consensus 160 ----------------~~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~ 223 (287)
T cd01854 160 ----------------KGKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGF 223 (287)
T ss_pred ----------------ccceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCC
Confidence 136899999999999999999999876 454443 1 24555555555556689999999
Q ss_pred cCCC
Q 010472 286 VFPS 289 (509)
Q Consensus 286 ~~p~ 289 (509)
....
T Consensus 224 ~~~~ 227 (287)
T cd01854 224 REFG 227 (287)
T ss_pred CccC
Confidence 6433
No 309
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.72 E-value=1.2e-17 Score=166.29 Aligned_cols=172 Identities=12% Similarity=0.083 Sum_probs=116.4
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEe-----------eCCcccccceee-ec--CeEEEEeCCCccCCCC
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTS-----------TPGKTKHFQTLI-IS--EKLVLCDCPGLVFPSF 290 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~-----------~~G~t~~~~~~~-~~--~~i~l~d~pg~~~p~~ 290 (509)
+.+|++++|+|+||||||||+++|+|+.+ .|.+. +.|......... .+ ..+.++.+-...+|.
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~- 101 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPK- 101 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCch-
Confidence 67899999999999999999999999987 67774 445432111000 01 123444332222231
Q ss_pred cccHHHHHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eC
Q 010472 291 SISRYDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----AS 366 (509)
Q Consensus 291 ~~~~~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----Pt 366 (509)
+..+.+...+.. .. ....+.+.+..+++.. +....+..||+|++|| ++||+|++.+|.++ |+
T Consensus 102 --~~~~~i~~~l~~----~~---~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qr----v~laral~~~p~illlDEPt 167 (255)
T cd03236 102 --AVKGKVGELLKK----KD---ERGKLDELVDQLELRH-VLDRNIDQLSGGELQR----VAIAAALARDADFYFFDEPS 167 (255)
T ss_pred --HHHHHHHHHhch----hH---HHHHHHHHHHHcCCch-hhcCChhhCCHHHHHH----HHHHHHHHhCCCEEEEECCC
Confidence 223333332211 01 1123344444455655 4566788999999999 99999999999998 99
Q ss_pred CCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhccc
Q 010472 367 SGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLL 413 (509)
Q Consensus 367 sGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~ 413 (509)
+|||...+ .+..+|+++.+.+..++...|.+.....+++.+.++++.
T Consensus 168 s~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~~~ 215 (255)
T cd03236 168 SYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLYGE 215 (255)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEECCC
Confidence 99999999 999999998764456777888888888666677776654
No 310
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.72 E-value=1.9e-18 Score=157.40 Aligned_cols=172 Identities=9% Similarity=0.112 Sum_probs=131.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc-eeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ-TLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~-~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
.+.+|+.++|+||+|||||||+++++.+.. .|++.+.|.+...- ...++..+.||-|...+|+. ++++|+.+..
T Consensus 25 ~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~---tVeDNlifP~ 101 (223)
T COG4619 25 SVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD---TVEDNLIFPW 101 (223)
T ss_pred eecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccccc---chhhccccch
Confidence 467899999999999999999999999987 89999999886532 23456678888887777665 6777765543
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHH
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AAR 377 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~ 377 (509)
.....-.+ ...+.+.+.++++.+.+..+....||||++|| .+|+|.|..-|++| ||++||+.+. .+.
T Consensus 102 ~~r~rr~d----r~aa~~llar~~l~~~~L~k~it~lSGGE~Qr----iAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie 173 (223)
T COG4619 102 QIRNRRPD----RAAALDLLARFALPDSILTKNITELSGGEKQR----IALIRNLQFMPKILLLDEITSALDESNKRNIE 173 (223)
T ss_pred HHhccCCC----hHHHHHHHHHcCCchhhhcchhhhccchHHHH----HHHHHHhhcCCceEEecCchhhcChhhHHHHH
Confidence 22111112 22344455566677756677788999999999 99999999999998 9999999999 999
Q ss_pred HHHHHhh-cCCccEEEcCCCCChhhccchhhH
Q 010472 378 IILKDFI-DGKLPHFEMPPGMSHEEVGMEDTQ 408 (509)
Q Consensus 378 ~lLkd~~-~gkl~~~~~pp~~~~~~~~~~~~~ 408 (509)
.+|..|. .....++..+|+-+++-...+...
T Consensus 174 ~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~i 205 (223)
T COG4619 174 EMIHRYVREQNVAVLWITHDKDQAIRHADKVI 205 (223)
T ss_pred HHHHHHhhhhceEEEEEecChHHHhhhhheEE
Confidence 9998886 577888888888777655544433
No 311
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.72 E-value=6.4e-18 Score=190.43 Aligned_cols=180 Identities=15% Similarity=0.118 Sum_probs=132.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++++|+.++|+|+||||||||+++|+|+.. .|.+.++|..... ....+++.++++.|...+|+. +..+|+..+.
T Consensus 475 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g---TI~eNi~~~~ 551 (686)
T TIGR03797 475 QIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG---SIFENIAGGA 551 (686)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc---cHHHHHhcCC
Confidence 578999999999999999999999999987 7999999976432 333456789999999888654 7888887763
Q ss_pred CCcchhhhHHHHHHHHHHhCCcc--------chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRH--------VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~--------~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
. .. + +.+..+++..... ++.. ........|||||+|| ++|||||+.+|+++ ||++||
T Consensus 552 ~-~~---~--e~i~~al~~a~l~~~i~~lp~G~dt-~ige~G~~LSGGQrQR----ialARAll~~p~iLiLDEpTS~LD 620 (686)
T TIGR03797 552 P-LT---L--DEAWEAARMAGLAEDIRAMPMGMHT-VISEGGGTLSGGQRQR----LLIARALVRKPRILLFDEATSALD 620 (686)
T ss_pred C-CC---H--HHHHHHHHHcCcHHHHHhccccccc-cccCCCCCCCHHHHHH----HHHHHHHhcCCCEEEEeCCccCCC
Confidence 2 11 1 2222333332211 1111 1112235699999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
+.+. .+.+.|+.+ ++ +++..+|..+..+. +|.+.+++.|++++.++.+.
T Consensus 621 ~~te~~i~~~L~~~--~~-T~IiItHr~~~i~~-~D~Iivl~~G~iv~~G~~~~ 670 (686)
T TIGR03797 621 NRTQAIVSESLERL--KV-TRIVIAHRLSTIRN-ADRIYVLDAGRVVQQGTYDE 670 (686)
T ss_pred HHHHHHHHHHHHHh--CC-eEEEEecChHHHHc-CCEEEEEECCEEEEECCHHH
Confidence 9998 888888876 33 66777777777666 55666778888887766543
No 312
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.72 E-value=7.6e-18 Score=186.10 Aligned_cols=182 Identities=14% Similarity=0.096 Sum_probs=130.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++++|++++|+|+||+|||||+++|+|... .|.+.++|.+... ....++..+++++|...+|+. +..+|+..+.
T Consensus 362 ~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~---ti~~Ni~~~~ 438 (574)
T PRK11160 362 QIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA---TLRDNLLLAA 438 (574)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcc---cHHHHhhcCC
Confidence 578999999999999999999999999986 7999999976432 223456679999998888653 6778887664
Q ss_pred CCcchhhhHHHHHHHHHHhCCcc-------chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCH
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRH-------VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPD 371 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~-------~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~ 371 (509)
... . .+.+..+++..... ++.... ......|||||+|| ++||||++.+|+++ ||++||+
T Consensus 439 ~~~---~--~~~i~~al~~~~l~~~i~~p~GldT~v-ge~g~~LSgGqrqR----ialARall~~~~ililDE~ts~lD~ 508 (574)
T PRK11160 439 PNA---S--DEALIEVLQQVGLEKLLEDDKGLNAWL-GEGGRQLSGGEQRR----LGIARALLHDAPLLLLDEPTEGLDA 508 (574)
T ss_pred Ccc---C--HHHHHHHHHHcCCHHHHcCccccCchh-cCCCCCCCHHHHHH----HHHHHHHhcCCCEEEEeCCcccCCH
Confidence 211 1 12223333332211 111101 12345699999999 99999999999998 9999999
Q ss_pred HHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 372 ETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 372 ~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
.+. .+.+.|..+.++++++ ...|..+.... ++.+.+++.|++++.++.+
T Consensus 509 ~t~~~i~~~l~~~~~~~tvi-iitHr~~~~~~-~d~i~~l~~G~i~~~g~~~ 558 (574)
T PRK11160 509 ETERQILELLAEHAQNKTVL-MITHRLTGLEQ-FDRICVMDNGQIIEQGTHQ 558 (574)
T ss_pred HHHHHHHHHHHHHcCCCEEE-EEecChhHHHh-CCEEEEEeCCeEEEeCCHH
Confidence 999 9999999987776544 33455555554 5666777888888765543
No 313
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1.9e-17 Score=181.24 Aligned_cols=166 Identities=10% Similarity=0.055 Sum_probs=122.4
Q ss_pred ccCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCc--cCCCCcccHHHHHHh
Q 010472 225 NVAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGL--VFPSFSISRYDMVAS 300 (509)
Q Consensus 225 ~~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~--~~p~~~~~~~e~v~~ 300 (509)
-++.+|++++|+|+||||||||+++|+|+.. .|.+.+.|. ..++|++|... +++.+ +..+++..
T Consensus 340 ~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~----------~~i~~~~q~~~~~~~~~~--t~~~~~~~ 407 (530)
T PRK15064 340 LLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN----------ANIGYYAQDHAYDFENDL--TLFDWMSQ 407 (530)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc----------eEEEEEcccccccCCCCC--cHHHHHHH
Confidence 3578999999999999999999999999976 688877652 35788877532 33444 44444432
Q ss_pred ccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-H
Q 010472 301 GVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-A 375 (509)
Q Consensus 301 g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~ 375 (509)
.... .... ..+.+.+..+++...+....+..|||||+|| +.||+||+.+|.+| ||+|||+.++ .
T Consensus 408 ~~~~----~~~~---~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr----v~la~al~~~p~lllLDEPt~~LD~~~~~~ 476 (530)
T PRK15064 408 WRQE----GDDE---QAVRGTLGRLLFSQDDIKKSVKVLSGGEKGR----MLFGKLMMQKPNVLVMDEPTNHMDMESIES 476 (530)
T ss_pred hccC----CccH---HHHHHHHHHcCCChhHhcCcccccCHHHHHH----HHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence 1000 0111 2233444444563225567789999999999 99999999999998 9999999999 9
Q ss_pred HHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccc
Q 010472 376 ARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELH 416 (509)
Q Consensus 376 ~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~ 416 (509)
+..+|+.+ +. +++..+|+......+++.+.++..|+++
T Consensus 477 l~~~l~~~--~~-tvi~vsHd~~~~~~~~d~i~~l~~g~i~ 514 (530)
T PRK15064 477 LNMALEKY--EG-TLIFVSHDREFVSSLATRIIEITPDGVV 514 (530)
T ss_pred HHHHHHHC--CC-EEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 99999988 23 6777888888888777777888878776
No 314
>PRK13796 GTPase YqeH; Provisional
Probab=99.71 E-value=1.7e-16 Score=165.71 Aligned_cols=153 Identities=31% Similarity=0.381 Sum_probs=110.4
Q ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHH----HHHHHHHHH-HhcCC--
Q 010472 70 DMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFS----VRKRWAKYF-KDHDI-- 142 (509)
Q Consensus 70 e~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~----~~~~W~~yf-~~~gi-- 142 (509)
++.+.|..+-+..++|+.|||++++..++.+.+.+++ .+++++||+||+||++++ ....|..++ +..|+
T Consensus 58 ~~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~ 133 (365)
T PRK13796 58 DFLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRP 133 (365)
T ss_pred HHHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHh----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCc
Confidence 3444444444444499999999998888877777664 378999999999999743 346687654 44565
Q ss_pred -eEEEeehhhhHHhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCccccccc
Q 010472 143 -LFVFWSAKAASAALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVDES 221 (509)
Q Consensus 143 -~~if~Sa~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~ 221 (509)
.++++||+ .|. +.++|++.+.+..
T Consensus 134 ~~v~~vSAk------~g~-----------------------gI~eL~~~I~~~~-------------------------- 158 (365)
T PRK13796 134 VDVVLISAQ------KGH-----------------------GIDELLEAIEKYR-------------------------- 158 (365)
T ss_pred CcEEEEECC------CCC-----------------------CHHHHHHHHHHhc--------------------------
Confidence 35667874 222 3456666654321
Q ss_pred ccCccCCCCcEEEEEecCCCCHhHHHHHHhcCC----c-ceEEeeCCcccccceeeecCeEEEEeCCCccCC
Q 010472 222 FAGNVAPKNVIVGFVGYPNVGKSSTINALVGQK----R-TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFP 288 (509)
Q Consensus 222 ~~~~~i~~g~~vglvG~nGaGKSTLln~L~G~~----~-~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p 288 (509)
.+..+.+||.+|||||||||.|.+.. . ..++..||+|++...+.+.....++||||++.+
T Consensus 159 -------~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi~~~ 223 (365)
T PRK13796 159 -------EGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGIIHR 223 (365)
T ss_pred -------CCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEEEECCCcccc
Confidence 23468899999999999999998643 2 457889999998888777777889999999743
No 315
>PRK00098 GTPase RsgA; Reviewed
Probab=99.71 E-value=5.4e-17 Score=165.17 Aligned_cols=157 Identities=25% Similarity=0.299 Sum_probs=109.8
Q ss_pred cccccHHHHHHH----HHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH-hcCCcEEEEEeCCCCC-CHHHHHHHHHHH
Q 010472 64 PFEKNLDMWRQL----WRVLERSDLIVMVVDARDPLFYRCPDLEAYAREI-DKYKRTLLLVNKADLL-PFSVRKRWAKYF 137 (509)
Q Consensus 64 ~fE~nle~wrql----~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~-~~~K~~iLVlNK~DL~-p~~~~~~W~~yf 137 (509)
..++-...||.. ..++.++|++|+|+|+.+|.++.. .+++|+..+ ..++|++||+||+||. ..+....|.+++
T Consensus 59 i~~R~~~l~R~~~~~~q~iaaniD~vllV~d~~~p~~~~~-~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~ 137 (298)
T PRK00098 59 IHERKNLLVRPPIFKSKLIAANVDQAVLVFAAKEPDFSTD-LLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALY 137 (298)
T ss_pred EeCCCceEECCCCccccceeecCCEEEEEEECCCCCCCHH-HHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHH
Confidence 344443445532 235699999999999999976542 356666544 3478999999999997 455566799999
Q ss_pred HhcCCeEEEeehhhhHHhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCccc
Q 010472 138 KDHDILFVFWSAKAASAALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQS 217 (509)
Q Consensus 138 ~~~gi~~if~Sa~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~~~~~~ 217 (509)
.+.|+.++++||+ +|. |.++|.+.+
T Consensus 138 ~~~g~~v~~vSA~------~g~-----------------------gi~~L~~~l-------------------------- 162 (298)
T PRK00098 138 RAIGYDVLELSAK------EGE-----------------------GLDELKPLL-------------------------- 162 (298)
T ss_pred HHCCCeEEEEeCC------CCc-----------------------cHHHHHhhc--------------------------
Confidence 8889888888875 222 233443322
Q ss_pred ccccccCccCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEee-CC----cccccceeeecCeEEEEeCCCccC
Q 010472 218 VDESFAGNVAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTST-PG----KTKHFQTLIISEKLVLCDCPGLVF 287 (509)
Q Consensus 218 ~~~~~~~~~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~-~G----~t~~~~~~~~~~~i~l~d~pg~~~ 287 (509)
.|.+++|+|+||||||||+|+|+|... .|.+.. .| +|++.+...+.....++|+||+.-
T Consensus 163 -----------~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~ 228 (298)
T PRK00098 163 -----------AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSS 228 (298)
T ss_pred -----------cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCc
Confidence 367899999999999999999999876 444432 22 444444444555678999999873
No 316
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.71 E-value=4.9e-18 Score=163.80 Aligned_cols=188 Identities=12% Similarity=0.036 Sum_probs=138.2
Q ss_pred ccCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce--eeecCeEEEEeCC-CccCCCCcccHHHHHH
Q 010472 225 NVAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT--LIISEKLVLCDCP-GLVFPSFSISRYDMVA 299 (509)
Q Consensus 225 ~~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~--~~~~~~i~l~d~p-g~~~p~~~~~~~e~v~ 299 (509)
.++++|+..+|+|+|||||||||++|+|... +|.+.+.|+...... ..+++.|+++... ...|+. ..++.+.++
T Consensus 52 W~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~-~~~v~dvVl 130 (257)
T COG1119 52 WQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRV-RETVRDVVL 130 (257)
T ss_pred eeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhccc-ccccceeee
Confidence 4678999999999999999999999999988 477777775543221 3456677776542 222332 124455666
Q ss_pred hccCCcchhh---hHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHH
Q 010472 300 SGVLPIDRMT---EHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDE 372 (509)
Q Consensus 300 ~g~~~~~~~~---~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~ 372 (509)
.|.+....+. -.......+..++..+++.+ +..+....||-|++|| +-|||||+.+|.+| |++|||..
T Consensus 131 Sg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~-la~r~~~~LS~Ge~rr----vLiaRALv~~P~LLiLDEP~~GLDl~ 205 (257)
T COG1119 131 SGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH-LADRPFGSLSQGEQRR----VLIARALVKDPELLILDEPAQGLDLI 205 (257)
T ss_pred ecccccccccccCCCHHHHHHHHHHHHHcchhh-hccCchhhcCHhHHHH----HHHHHHHhcCCCEEEecCccccCChH
Confidence 6654321111 11233344445555566776 7778889999999999 99999999999998 99999999
Q ss_pred HH-HHHHHHHHhhcC--CccEEEcCCCCChhhccchhhHhhcccccccC
Q 010472 373 TR-AARIILKDFIDG--KLPHFEMPPGMSHEEVGMEDTQASSLLELHES 418 (509)
Q Consensus 373 ~r-~~~~lLkd~~~g--kl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~ 418 (509)
.| .+...|.++... ...++..+|...+.-.|-...+.+..|+++..
T Consensus 206 ~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~ 254 (257)
T COG1119 206 AREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQ 254 (257)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeec
Confidence 99 999999999765 78888899999998888777777777776654
No 317
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.71 E-value=1.2e-17 Score=185.06 Aligned_cols=182 Identities=15% Similarity=0.116 Sum_probs=132.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++++|+.++|+|+||||||||+++|+|+.. .|.+.++|...+. ....+++.++|++|...+|+. +..+|+..+.
T Consensus 363 ~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~---Ti~~NI~~~~ 439 (592)
T PRK10790 363 SVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD---TFLANVTLGR 439 (592)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccc---hHHHHHHhCC
Confidence 578999999999999999999999999987 7999999976532 223456789999999988764 6788888764
Q ss_pred CCcchhhhHHHHHHHHHHhCCcc--------chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRH--------VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~--------~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
+.. + +.+..+++..... ++.. ........|||||+|| ++|||||+.+|+++ ||++||
T Consensus 440 -~~~---d--~~i~~a~~~~gl~~~i~~lp~Gldt-~i~e~g~~LSGGqrQR----ialARaLl~~~~illlDEpts~LD 508 (592)
T PRK10790 440 -DIS---E--EQVWQALETVQLAELARSLPDGLYT-PLGEQGNNLSVGQKQL----LALARVLVQTPQILILDEATANID 508 (592)
T ss_pred -CCC---H--HHHHHHHHHcCcHHHHHhccccccc-cccCCCCCCCHHHHHH----HHHHHHHHhCCCEEEEeCCcccCC
Confidence 221 1 1222233322211 2221 1112245699999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
+.+. .+.+.|+++..++ +++..+|....-.. ++.+.+++.|++++.++.+.
T Consensus 509 ~~t~~~i~~~l~~~~~~~-tvIivtHr~~~l~~-~D~ii~l~~G~i~~~G~~~~ 560 (592)
T PRK10790 509 SGTEQAIQQALAAVREHT-TLVVIAHRLSTIVE-ADTILVLHRGQAVEQGTHQQ 560 (592)
T ss_pred HHHHHHHHHHHHHHhCCC-EEEEEecchHHHHh-CCEEEEEECCEEEEEcCHHH
Confidence 9998 8999999987765 44455566555554 56667788899988766543
No 318
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.71 E-value=1.9e-17 Score=182.34 Aligned_cols=168 Identities=18% Similarity=0.164 Sum_probs=121.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCC-ccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPG-LVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg-~~~p~~~~~~~e~v~~g~ 302 (509)
++.+|+++||+|+||||||||+++|+|+.+ .|.+.+.+. ..++|++|.. .+++.+ ++.+++..+.
T Consensus 346 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~----------~~i~~v~q~~~~~~~~~--tv~e~l~~~~ 413 (556)
T PRK11819 346 SLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGET----------VKLAYVDQSRDALDPNK--TVWEEISGGL 413 (556)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc----------eEEEEEeCchhhcCCCC--CHHHHHHhhc
Confidence 578999999999999999999999999976 687776321 1478888864 556666 5566665443
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHH
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AAR 377 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~ 377 (509)
.... ......... ..+..+++........+..|||||+|| +.||+||+.+|.+| ||+|||+.++ .+.
T Consensus 414 ~~~~-~~~~~~~~~---~~l~~~~l~~~~~~~~~~~LSgG~~qr----v~la~al~~~p~lllLDEPt~~LD~~~~~~l~ 485 (556)
T PRK11819 414 DIIK-VGNREIPSR---AYVGRFNFKGGDQQKKVGVLSGGERNR----LHLAKTLKQGGNVLLLDEPTNDLDVETLRALE 485 (556)
T ss_pred cccc-ccccHHHHH---HHHHhCCCChhHhcCchhhCCHHHHHH----HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH
Confidence 1110 000011112 234444564324466788999999999 99999999999998 9999999999 999
Q ss_pred HHHHHhhcCCccEEEcCCCCChhhccchhhHhhc-ccccc
Q 010472 378 IILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASS-LLELH 416 (509)
Q Consensus 378 ~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~-~~~~~ 416 (509)
.+|+++. | +++..+|++.....+++.+.+++ +|.+.
T Consensus 486 ~~l~~~~-~--tvi~vtHd~~~~~~~~d~i~~l~~~g~~~ 522 (556)
T PRK11819 486 EALLEFP-G--CAVVISHDRWFLDRIATHILAFEGDSQVE 522 (556)
T ss_pred HHHHhCC-C--eEEEEECCHHHHHHhCCEEEEEECCCeEE
Confidence 9999984 4 46778888887776666666665 46655
No 319
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.71 E-value=1.5e-17 Score=156.50 Aligned_cols=141 Identities=16% Similarity=0.059 Sum_probs=97.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccCCc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVLPI 305 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~~~ 305 (509)
++.+|++++|+||||||||||||+|.+ ..|.+.+.|..... .+..+.++++
T Consensus 17 ~i~~G~~~~l~G~nG~GKSTLl~~il~--~~G~v~~~~~~~~~----~~~~~~~~~q----------------------- 67 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEGLY--ASGKARLISFLPKF----SRNKLIFIDQ----------------------- 67 (176)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhh--cCCcEEECCccccc----ccccEEEEhH-----------------------
Confidence 578999999999999999999999974 46666665432111 0112333222
Q ss_pred chhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHc--CCce----eCCCCCHHHH-HHHH
Q 010472 306 DRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCAS--RGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 306 ~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~--p~lL----PtsGLD~~~r-~~~~ 378 (509)
..+.+. ++|........+..||+||+|| ++||+|++.+ |.++ |++|||+..+ .+..
T Consensus 68 ----------~~~l~~---~~L~~~~~~~~~~~LSgGq~qr----l~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~ 130 (176)
T cd03238 68 ----------LQFLID---VGLGYLTLGQKLSTLSGGELQR----VKLASELFSEPPGTLFILDEPSTGLHQQDINQLLE 130 (176)
T ss_pred ----------HHHHHH---cCCCccccCCCcCcCCHHHHHH----HHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHH
Confidence 012222 2343212345678899999999 9999999999 9988 9999999999 9999
Q ss_pred HHHHhhcCCccEEEcCCCCChhhccchhhHhhccc
Q 010472 379 ILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLL 413 (509)
Q Consensus 379 lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~ 413 (509)
+|+++.+....++...|+.....+|+ .+.++..|
T Consensus 131 ~l~~~~~~g~tvIivSH~~~~~~~~d-~i~~l~~g 164 (176)
T cd03238 131 VIKGLIDLGNTVILIEHNLDVLSSAD-WIIDFGPG 164 (176)
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHhCC-EEEEECCC
Confidence 99998754455666667766666655 44444333
No 320
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.71 E-value=2e-17 Score=181.65 Aligned_cols=186 Identities=14% Similarity=0.048 Sum_probs=127.1
Q ss_pred ccCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 225 NVAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 225 ~~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
-++++|+.++|+|+||+|||||+++|+|... .|.+.++|..... ....++..+++++|...+|+. +..+++..+
T Consensus 339 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~---ti~~Ni~~~ 415 (544)
T TIGR01842 339 FRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG---TVAENIARF 415 (544)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccc---cHHHHHhcc
Confidence 3578999999999999999999999999987 7999999976432 222345679999998888764 667777643
Q ss_pred cCCcchhhhHHHHHHH--HHHhCCcc--chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHH
Q 010472 302 VLPIDRMTEHRQAVQV--VANRVPRH--VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDET 373 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~--i~~~l~~~--~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~ 373 (509)
..... ..+.....+. +.+.+..+ ++.. ........|||||+|| ++||||++.+|+++ ||+|||+.+
T Consensus 416 ~~~~~-~~~~~~~~~~~~~~~~i~~l~~gl~t-~~~~~g~~LSgGq~qr----l~lARall~~~~ililDEpts~LD~~~ 489 (544)
T TIGR01842 416 GENAD-PEKIIEAAKLAGVHELILRLPDGYDT-VIGPGGATLSGGQRQR----IALARALYGDPKLVVLDEPNSNLDEEG 489 (544)
T ss_pred CCCCC-HHHHHHHHHHhChHHHHHhCcccccc-ccCCCcCCCCHHHHHH----HHHHHHHhcCCCEEEEeCCccccCHHH
Confidence 21111 0011111110 11111111 2222 2223356799999999 99999999999998 999999999
Q ss_pred H-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCC
Q 010472 374 R-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDA 420 (509)
Q Consensus 374 r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (509)
+ .+.+.|+.+...+..++...|.....+.| +.+.+++.|++++.++
T Consensus 490 ~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~-d~i~~l~~G~i~~~g~ 536 (544)
T TIGR01842 490 EQALANAIKALKARGITVVVITHRPSLLGCV-DKILVLQDGRIARFGE 536 (544)
T ss_pred HHHHHHHHHHHhhCCCEEEEEeCCHHHHHhC-CEEEEEECCEEEeeCC
Confidence 9 99999999864333444555555556554 5566777788876554
No 321
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.71 E-value=2.4e-17 Score=181.45 Aligned_cols=170 Identities=12% Similarity=0.027 Sum_probs=125.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.+. ..++|++|...+++.+ ++.+++..+..
T Consensus 29 ~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~----------~~i~~v~Q~~~~~~~~--tv~e~l~~~~~ 96 (556)
T PRK11819 29 SFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG----------IKVGYLPQEPQLDPEK--TVRENVEEGVA 96 (556)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----------CEEEEEecCCCCCCCC--cHHHHHHHhhH
Confidence 578999999999999999999999999976 677776531 3578888877677766 55555544321
Q ss_pred Ccc-------------hhh--h-------H------------HHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCch
Q 010472 304 PID-------------RMT--E-------H------------RQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPL 349 (509)
Q Consensus 304 ~~~-------------~~~--~-------~------------~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~ 349 (509)
... ... . . ......+...+..++|.. ..+.+..|||||+||
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~--~~~~~~~LSgGqkqr--- 171 (556)
T PRK11819 97 EVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP--WDAKVTKLSGGERRR--- 171 (556)
T ss_pred HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc--ccCchhhcCHHHHHH---
Confidence 000 000 0 0 000122333444445532 356678899999999
Q ss_pred HHHHHHHHHHcCCce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccc
Q 010472 350 ALELLRAYCASRGYV----ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELH 416 (509)
Q Consensus 350 ~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~ 416 (509)
+.||+||+.+|.+| ||+|||+.++ .+.++|+++. + +++..+|+......+++.+.+++.|.++
T Consensus 172 -v~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~-~--tviiisHd~~~~~~~~d~i~~l~~g~i~ 239 (556)
T PRK11819 172 -VALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP-G--TVVAVTHDRYFLDNVAGWILELDRGRGI 239 (556)
T ss_pred -HHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC-C--eEEEEeCCHHHHHhhcCeEEEEeCCEEE
Confidence 99999999999998 9999999999 9999999884 2 6778889988888888888888888875
No 322
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.71 E-value=1e-17 Score=189.06 Aligned_cols=180 Identities=13% Similarity=0.074 Sum_probs=130.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++++|++++|+|+||||||||+++|+|++. .|.+.++|..... ....++..+++++|...+|+ .+..+|+..+.
T Consensus 487 ~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~---~TI~eNi~~~~ 563 (694)
T TIGR03375 487 TIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFY---GTLRDNIALGA 563 (694)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhh---hhHHHHHhCCC
Confidence 578999999999999999999999999987 7999999976432 22345678999999888865 47888887763
Q ss_pred CCcchhhhHHHHHHHHHHhCCc--------cchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPR--------HVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~--------~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
.... .+.+..+++.... .++.. ........|||||+|| ++||||++.+|+++ ||++||
T Consensus 564 ~~~~-----~~~i~~a~~~~~l~~~i~~lp~gl~T-~i~e~G~~LSgGQrQR----lalARall~~p~iliLDE~Ts~LD 633 (694)
T TIGR03375 564 PYAD-----DEEILRAAELAGVTEFVRRHPDGLDM-QIGERGRSLSGGQRQA----VALARALLRDPPILLLDEPTSAMD 633 (694)
T ss_pred CCCC-----HHHHHHHHHHcChHHHHHhCcccccc-eecCCCCCCCHHHHHH----HHHHHHHhcCCCEEEEeCCCCCCC
Confidence 2111 1122222222221 12221 1112245699999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCC
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDA 420 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (509)
+.+. .+.+.|..+.++++. +..+|..+....| +.+.+++.|++++.++
T Consensus 634 ~~te~~i~~~l~~~~~~~T~-iiItHrl~~~~~~-D~iivl~~G~i~e~G~ 682 (694)
T TIGR03375 634 NRSEERFKDRLKRWLAGKTL-VLVTHRTSLLDLV-DRIIVMDNGRIVADGP 682 (694)
T ss_pred HHHHHHHHHHHHHHhCCCEE-EEEecCHHHHHhC-CEEEEEeCCEEEeeCC
Confidence 9999 899999998776544 4445666666655 5566778888887554
No 323
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.71 E-value=8.9e-18 Score=189.99 Aligned_cols=180 Identities=15% Similarity=0.104 Sum_probs=129.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++++|+.++|+|+||||||||+++|+|++. .|.+.++|..... ....+++.+++++|...+|+ .+..+|+..+.
T Consensus 501 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~---gTi~eNi~l~~ 577 (710)
T TIGR03796 501 TLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFE---GTVRDNLTLWD 577 (710)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhh---ccHHHHhhCCC
Confidence 578999999999999999999999999987 7999999976432 22345778999999888864 47788887652
Q ss_pred CCcchhhhHHHHHHHHHHhCCcc--------chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRH--------VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~--------~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
.... .+.+..+++..... ++.. ........|||||+|| ++|||||+++|+++ ||++||
T Consensus 578 ~~~~-----~~~i~~al~~~~l~~~i~~lp~gl~t-~i~e~G~~LSGGQrQR----iaLARall~~p~iliLDEptS~LD 647 (710)
T TIGR03796 578 PTIP-----DADLVRACKDAAIHDVITSRPGGYDA-ELAEGGANLSGGQRQR----LEIARALVRNPSILILDEATSALD 647 (710)
T ss_pred CCCC-----HHHHHHHHHHhCCHHHHHhCcCcccc-eeccCCCCCCHHHHHH----HHHHHHHhhCCCEEEEECccccCC
Confidence 1111 11222222222211 2222 1112245699999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
..+. .+.+.|+. .+ .+++..+|..+....| |.+.+++.|++++.++.+
T Consensus 648 ~~te~~i~~~l~~--~~-~T~IiitHrl~~i~~~-D~Iivl~~G~i~~~G~~~ 696 (710)
T TIGR03796 648 PETEKIIDDNLRR--RG-CTCIIVAHRLSTIRDC-DEIIVLERGKVVQRGTHE 696 (710)
T ss_pred HHHHHHHHHHHHh--cC-CEEEEEecCHHHHHhC-CEEEEEeCCEEEEecCHH
Confidence 9998 88888876 33 4566667887777775 555667888888766543
No 324
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.8e-17 Score=179.82 Aligned_cols=183 Identities=16% Similarity=0.149 Sum_probs=138.7
Q ss_pred ccCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccc-ccceeeecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 225 NVAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTK-HFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 225 ~~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~-~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
-++++|+++|||||+|+||||+++.|..++. +|.+.++|++. +.....+++.++++.|...+| +.+..+|+.+|
T Consensus 489 fti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLF---s~sI~eNI~YG 565 (716)
T KOG0058|consen 489 FTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLF---SGSIRENIAYG 565 (716)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceee---cccHHHHHhcC
Confidence 3689999999999999999999999999987 89999999884 344455678899999999985 45789999999
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccc----hhhHhhc---cCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHV----IENVCKI---NLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~----L~~~~~~---~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
+.... .+.+..+++..+-++ +.+-|.. .....|||||+|| ++|||||+++|.+| .|++||
T Consensus 566 ~~~~t-----~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQR----IAIARALlr~P~VLILDEATSALD 636 (716)
T KOG0058|consen 566 LDNAT-----DEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQR----IAIARALLRNPRVLILDEATSALD 636 (716)
T ss_pred CCCCC-----HHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHH----HHHHHHHhcCCCEEEEechhhhcc
Confidence 86322 122333333332221 2222322 1233699999999 99999999999998 899999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
.++. .+.+.|....+++ +.+..-|-++.-+..+ .+++.+.|++++-+.-
T Consensus 637 aeSE~lVq~aL~~~~~~r-TVlvIAHRLSTV~~Ad-~Ivvi~~G~V~E~G~h 686 (716)
T KOG0058|consen 637 AESEYLVQEALDRLMQGR-TVLVIAHRLSTVRHAD-QIVVIDKGRVVEMGTH 686 (716)
T ss_pred hhhHHHHHHHHHHhhcCC-eEEEEehhhhHhhhcc-EEEEEcCCeEEecccH
Confidence 9999 8999998888885 4555667777766655 6677788888886643
No 325
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.70 E-value=1.9e-16 Score=165.13 Aligned_cols=159 Identities=33% Similarity=0.405 Sum_probs=117.1
Q ss_pred cccccHHHHHH-HHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHH----HHHHHH-HHH
Q 010472 64 PFEKNLDMWRQ-LWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFS----VRKRWA-KYF 137 (509)
Q Consensus 64 ~fE~nle~wrq-l~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~----~~~~W~-~yf 137 (509)
+.+.+-+.++. +..+...+|+|++|+|++++..++.+.+.+++ .+++++||+||+||++++ ....|. +++
T Consensus 45 ~~~~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~ 120 (360)
T TIGR03597 45 DVELNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRA 120 (360)
T ss_pred cCCCCHHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHH
Confidence 33444444444 44455788999999999999988888777664 378999999999999754 345676 456
Q ss_pred HhcCCe---EEEeehhhhHHhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 010472 138 KDHDIL---FVFWSAKAASAALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSN 214 (509)
Q Consensus 138 ~~~gi~---~if~Sa~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~~~ 214 (509)
++.|+. ++++||+ .|. +.++|++.|....
T Consensus 121 k~~g~~~~~i~~vSAk------~g~-----------------------gv~eL~~~l~~~~------------------- 152 (360)
T TIGR03597 121 KELGLKPVDIILVSAK------KGN-----------------------GIDELLDKIKKAR------------------- 152 (360)
T ss_pred HHcCCCcCcEEEecCC------CCC-----------------------CHHHHHHHHHHHh-------------------
Confidence 667763 5667874 222 4457776664321
Q ss_pred cccccccccCccCCCCcEEEEEecCCCCHhHHHHHHhcCCc-----ceEEeeCCcccccceeeecCeEEEEeCCCccCC
Q 010472 215 VQSVDESFAGNVAPKNVIVGFVGYPNVGKSSTINALVGQKR-----TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFP 288 (509)
Q Consensus 215 ~~~~~~~~~~~~i~~g~~vglvG~nGaGKSTLln~L~G~~~-----~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p 288 (509)
.|..++|||.+|||||||||.|++... ..++..||+|+......+...+.++|+||+..+
T Consensus 153 --------------~~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 153 --------------NKKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGIINS 217 (360)
T ss_pred --------------CCCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCCCh
Confidence 145789999999999999999998643 467788999998877777667889999999854
No 326
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.70 E-value=5.2e-17 Score=163.94 Aligned_cols=168 Identities=13% Similarity=0.076 Sum_probs=116.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
.+.+|++++|+|+||||||||+++|+|+.+ .|.+.+.| .++|+++...+++. +..+++..+..
T Consensus 59 ~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------------~i~yv~q~~~l~~~---tv~enl~~~~~ 123 (282)
T cd03291 59 KIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------RISFSSQFSWIMPG---TIKENIIFGVS 123 (282)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------EEEEEeCccccccc---CHHHHhhcccc
Confidence 578999999999999999999999999976 68887766 37788887666652 56666655432
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhH----------hhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCC
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENV----------CKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGL 369 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~----------~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGL 369 (509)
. .. .....+.+.+. +... .....+..||+||+|| +.||+||+.+|.++ |++||
T Consensus 124 ~-~~-----~~~~~~l~~~~---l~~~l~~~~~~~~~~~~~~~~~LSgGq~qr----v~lAraL~~~p~iLiLDEPt~gL 190 (282)
T cd03291 124 Y-DE-----YRYKSVVKACQ---LEEDITKFPEKDNTVLGEGGITLSGGQRAR----ISLARAVYKDADLYLLDSPFGYL 190 (282)
T ss_pred c-CH-----HHHHHHHHHhC---CHHHHHhccccccceecCCCCcCCHHHHHH----HHHHHHHhcCCCEEEEECCCccC
Confidence 1 10 00111111111 1110 0112346899999999 99999999999988 99999
Q ss_pred CHHHH-HHHHH-HHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 370 PDETR-AARII-LKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 370 D~~~r-~~~~l-Lkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
|+..+ .+... ++.+..+ ..++...|.+..... ++.+.++..|+++..++.+.
T Consensus 191 D~~~~~~l~~~ll~~~~~~-~tIiiisH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 244 (282)
T cd03291 191 DVFTEKEIFESCVCKLMAN-KTRILVTSKMEHLKK-ADKILILHEGSSYFYGTFSE 244 (282)
T ss_pred CHHHHHHHHHHHHHHhhCC-CEEEEEeCChHHHHh-CCEEEEEECCEEEEECCHHH
Confidence 99999 77764 5666655 455666677776654 56777788888877666543
No 327
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.70 E-value=2.4e-17 Score=184.13 Aligned_cols=170 Identities=14% Similarity=0.159 Sum_probs=123.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCC-CccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCP-GLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~p-g~~~p~~~~~~~e~v~~g~ 302 (509)
.+.+|+++||+|+|||||||||++|+|... .|.+.+ |... .++|++|. ..++|.+ ++.+++..+.
T Consensus 341 ~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~---------~i~y~~q~~~~l~~~~--tv~e~l~~~~ 408 (635)
T PRK11147 341 QVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL---------EVAYFDQHRAELDPEK--TVMDNLAEGK 408 (635)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc---------EEEEEeCcccccCCCC--CHHHHHHhhc
Confidence 678999999999999999999999999976 687776 4321 47788874 3466666 5566665432
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHH
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AAR 377 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~ 377 (509)
.... ... ....+...+..+++........+..|||||+|| +.||+||+.+|.+| ||+|||..++ .+.
T Consensus 409 ~~~~-~~~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqR----l~la~al~~~p~lLlLDEPt~~LD~~~~~~l~ 480 (635)
T PRK11147 409 QEVM-VNG---RPRHVLGYLQDFLFHPKRAMTPVKALSGGERNR----LLLARLFLKPSNLLILDEPTNDLDVETLELLE 480 (635)
T ss_pred cccc-ccc---hHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHH----HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH
Confidence 2110 011 112344445555564224456788999999999 99999999999998 9999999999 999
Q ss_pred HHHHHhhcCCccEEEcCCCCChhhccchhhHhhc-ccccccC
Q 010472 378 IILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASS-LLELHES 418 (509)
Q Consensus 378 ~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~-~~~~~~~ 418 (509)
.+|+++ .| +++..+|+......+++.+.+++ .|.+..+
T Consensus 481 ~~l~~~-~~--tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~ 519 (635)
T PRK11147 481 ELLDSY-QG--TVLLVSHDRQFVDNTVTECWIFEGNGKIGRY 519 (635)
T ss_pred HHHHhC-CC--eEEEEECCHHHHHHhcCEEEEEeCCCeEEEc
Confidence 999988 33 56777788777766666666776 5777665
No 328
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.70 E-value=2.7e-17 Score=180.90 Aligned_cols=169 Identities=18% Similarity=0.162 Sum_probs=122.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCC-ccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPG-LVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg-~~~p~~~~~~~e~v~~g~ 302 (509)
.+.+|++++|+|+||||||||+++|+|+.. .|.+.+.+ . ..++|++|.. .+++.+ ++.+++..+.
T Consensus 344 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~---------~~i~~v~q~~~~~~~~~--tv~e~l~~~~ 411 (552)
T TIGR03719 344 KLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T---------VKLAYVDQSRDALDPNK--TVWEEISGGL 411 (552)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c---------eEEEEEeCCccccCCCC--cHHHHHHhhc
Confidence 578999999999999999999999999976 68777632 1 1478888864 356665 5666665543
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHH
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AAR 377 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~ 377 (509)
.... ....... +.+.+..+++...+....+..|||||+|| ++||+||+.+|.++ ||+|||+.++ .+.
T Consensus 412 ~~~~-~~~~~~~---~~~~l~~~~l~~~~~~~~~~~LSgGe~qr----v~la~al~~~p~lllLDEPt~~LD~~~~~~l~ 483 (552)
T TIGR03719 412 DIIQ-LGKREVP---SRAYVGRFNFKGSDQQKKVGQLSGGERNR----VHLAKTLKSGGNVLLLDEPTNDLDVETLRALE 483 (552)
T ss_pred cccc-cCcchHH---HHHHHHhCCCChhHhcCchhhCCHHHHHH----HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Confidence 2111 1010111 22334444564324466788999999999 99999999999998 9999999999 999
Q ss_pred HHHHHhhcCCccEEEcCCCCChhhccchhhHhhcc-ccccc
Q 010472 378 IILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSL-LELHE 417 (509)
Q Consensus 378 ~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~-~~~~~ 417 (509)
.+|+++. | +++..+|++.....+++.+.++++ |.+..
T Consensus 484 ~~l~~~~-~--~viivsHd~~~~~~~~d~i~~l~~~~~~~~ 521 (552)
T TIGR03719 484 EALLEFA-G--CAVVISHDRWFLDRIATHILAFEGDSHVEW 521 (552)
T ss_pred HHHHHCC-C--eEEEEeCCHHHHHHhCCEEEEEECCCeEEE
Confidence 9999984 3 467788888887776667777764 56553
No 329
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.70 E-value=5.1e-17 Score=194.56 Aligned_cols=186 Identities=12% Similarity=0.054 Sum_probs=132.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-----ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHh
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-----TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVAS 300 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-----~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~ 300 (509)
.+.+|+++||+|+||||||||+|+|+|... .|.+.++|..... ..++.++|+.|...+++.+ ++.+++..
T Consensus 785 ~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~---~~~~~i~yv~Q~~~~~~~~--Tv~E~L~~ 859 (1394)
T TIGR00956 785 WVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS---SFQRSIGYVQQQDLHLPTS--TVRESLRF 859 (1394)
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh---hhhcceeeecccccCCCCC--CHHHHHHH
Confidence 467899999999999999999999999974 4889999976532 2355688998876667766 55565544
Q ss_pred cc--CCcchhhhHHHHHHHHHHhCCccchhhHhhccCCC----CCCccccCCCchHHHHHHHHHHcCC-ce----eCCCC
Q 010472 301 GV--LPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPK----PKPYESQSRPPLALELLRAYCASRG-YV----ASSGL 369 (509)
Q Consensus 301 g~--~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~----~LSgGq~QR~~~~~~La~ALa~~p~-lL----PtsGL 369 (509)
+. ...... ...+..+.+.+.+..++|.+ +.+..+. .|||||+|| +.||++|+.+|+ +| ||+||
T Consensus 860 ~a~l~~~~~~-~~~~~~~~v~~~l~~l~L~~-~~d~~v~~~~~~LSgGqrqR----l~Ia~aL~~~P~~iLlLDEPTsgL 933 (1394)
T TIGR00956 860 SAYLRQPKSV-SKSEKMEYVEEVIKLLEMES-YADAVVGVPGEGLNVEQRKR----LTIGVELVAKPKLLLFLDEPTSGL 933 (1394)
T ss_pred HHHhCCCCCC-CHHHHHHHHHHHHHHcCChh-hCCCeeCCCCCCCCHHHhhH----HHHHHHHHcCCCeEEEEcCCCCCC
Confidence 32 111111 11122233444444555655 4444444 699999999 999999999997 55 99999
Q ss_pred CHHHH-HHHHHHHHhhcCCccEEEcCCCCChh--hccchhhHhhcccccccCCCCc
Q 010472 370 PDETR-AARIILKDFIDGKLPHFEMPPGMSHE--EVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 370 D~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
|..++ .+..+|+++.+.+.+++...|..+.. +.+|+...+.+||+++..++.+
T Consensus 934 D~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 934 DSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLG 989 (1394)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcc
Confidence 99999 99999999966555677777777754 4555555555566888877653
No 330
>PLN03140 ABC transporter G family member; Provisional
Probab=99.69 E-value=5e-17 Score=194.46 Aligned_cols=187 Identities=14% Similarity=0.134 Sum_probs=132.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc----ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR----TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~----~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
.+.+|++++|+|+||||||||||+|+|... .|.+.++|...... ..+..++|+.|...++|.+ ++.+++..+
T Consensus 902 ~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~--~~~~~igyv~Q~d~~~~~l--TV~E~L~~~ 977 (1470)
T PLN03140 902 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE--TFARISGYCEQNDIHSPQV--TVRESLIYS 977 (1470)
T ss_pred EEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChH--HhhhheEEEccccccCCCC--cHHHHHHHH
Confidence 467899999999999999999999999875 57788888654321 2234688999987788877 556665443
Q ss_pred cC-Cc-chhhhHHHHHHHHHHhCCccchhhHhhccCC-----CCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 302 VL-PI-DRMTEHRQAVQVVANRVPRHVIENVCKINLP-----KPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 302 ~~-~~-~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~-----~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
.. .. ... ...+....+.+.+..++|.+ +.+..+ ..|||||+|| +.||++|+.+|++| ||+|||
T Consensus 978 a~lr~~~~~-~~~~~~~~v~~vl~~lgL~~-~~~~~vg~~~~~~LSgGerkR----vsIa~aL~~~P~lL~LDEPTsgLD 1051 (1470)
T PLN03140 978 AFLRLPKEV-SKEEKMMFVDEVMELVELDN-LKDAIVGLPGVTGLSTEQRKR----LTIAVELVANPSIIFMDEPTSGLD 1051 (1470)
T ss_pred HHhCCCCCC-CHHHHHHHHHHHHHHCCChh-HhCCccCCCCCCCcCHHHHHH----HHHHHHHhhCCCEEEEeCCCCCCC
Confidence 21 11 111 11122233444444555665 444443 5799999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCCh--hhccchhhHhhcccccccCCCCc
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSH--EEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
..++ .+.++|+.+.+.+.+++...|..+. .+.+|+...+.+||+++..++.+
T Consensus 1052 ~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1052 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLG 1106 (1470)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcc
Confidence 9999 9999999997654566666677763 34555544444478888877754
No 331
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.69 E-value=5.8e-17 Score=178.92 Aligned_cols=182 Identities=13% Similarity=0.072 Sum_probs=129.5
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
.+++|++++|+|+||||||||+++|+|+.. .|.+.++|..... ....++..+++++|...+|+ .+..+++..+.
T Consensus 337 ~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~---~ti~~Ni~~~~ 413 (569)
T PRK10789 337 TLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFS---DTVANNIALGR 413 (569)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeecc---ccHHHHHhcCC
Confidence 578999999999999999999999999987 7999999976432 22234567899999887765 36778887653
Q ss_pred CCcchhhhHHHHHHHHHHhCCc--------cchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPR--------HVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~--------~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
.... .+.+..+++.... .++.. ........|||||+|| ++||||++++|+++ ||++||
T Consensus 414 ~~~~-----~~~~~~~~~~~~l~~~i~~lp~gl~t-~~~~~g~~LSgGq~qR----i~lARall~~~~illlDEpts~LD 483 (569)
T PRK10789 414 PDAT-----QQEIEHVARLASVHDDILRLPQGYDT-EVGERGVMLSGGQKQR----ISIARALLLNAEILILDDALSAVD 483 (569)
T ss_pred CCCC-----HHHHHHHHHHcCCHHHHHhCcCcccc-eecCCCCcCCHHHHHH----HHHHHHHhcCCCEEEEECccccCC
Confidence 2111 1122222222211 12222 1122345799999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
+.+. .+.+.|+++..|++ ++...|..+....| +.+.+++.|++++.++.+
T Consensus 484 ~~~~~~i~~~l~~~~~~~t-ii~itH~~~~~~~~-d~i~~l~~G~i~~~g~~~ 534 (569)
T PRK10789 484 GRTEHQILHNLRQWGEGRT-VIISAHRLSALTEA-SEILVMQHGHIAQRGNHD 534 (569)
T ss_pred HHHHHHHHHHHHHHhCCCE-EEEEecchhHHHcC-CEEEEEeCCEEEEecCHH
Confidence 9999 99999999876654 44455665555554 556677778887766543
No 332
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.69 E-value=3.7e-17 Score=153.91 Aligned_cols=122 Identities=17% Similarity=0.137 Sum_probs=98.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
.+++|++++|+|+||||||||+++|+|+.. .|.+.+.|.. +.++.+ ..
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----------i~~~~q------~~------------- 70 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-----------PVYKPQ------YI------------- 70 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-----------EEEEcc------cC-------------
Confidence 568999999999999999999999999976 7888777631 222211 00
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
.||+||+|| ++||+|++.+|.++ |++|||+..+ .+..
T Consensus 71 ----------------------------------~LSgGq~qr----v~laral~~~p~lllLDEPts~LD~~~~~~l~~ 112 (177)
T cd03222 71 ----------------------------------DLSGGELQR----VAIAAALLRNATFYLFDEPSAYLDIEQRLNAAR 112 (177)
T ss_pred ----------------------------------CCCHHHHHH----HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHH
Confidence 099999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhc-CCccEEEcCCCCChhhccchhhHhhccccc
Q 010472 379 ILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLEL 415 (509)
Q Consensus 379 lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~ 415 (509)
+|+++.. ++..++...|.+.....+++.+.+++++..
T Consensus 113 ~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~ 150 (177)
T cd03222 113 AIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPG 150 (177)
T ss_pred HHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCc
Confidence 9999865 446788888998888766666666655543
No 333
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.69 E-value=1.8e-17 Score=182.82 Aligned_cols=185 Identities=15% Similarity=0.129 Sum_probs=128.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
.+++|++++|+|+||+|||||+++|+|+.. .|.+.++|..... ....++..+.|++|...+|+. +..+|+..+.
T Consensus 354 ~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~---Ti~~Ni~~~~ 430 (571)
T TIGR02203 354 VIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFND---TIANNIAYGR 430 (571)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccc---cHHHHHhcCC
Confidence 578999999999999999999999999987 7999999976432 222345679999999888654 6778887663
Q ss_pred CCcchhhhHHHHHHHHHHhCCcc--------chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRH--------VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~--------~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
.+. .. .+.+..+++.+... ++.... ......|||||+|| ++||||++.+|+++ ||++||
T Consensus 431 ~~~--~~--~~~i~~~l~~~~l~~~i~~lp~gldt~i-~~~g~~LSgGqrQR----iaLARall~~~~illLDEpts~LD 501 (571)
T TIGR02203 431 TEQ--AD--RAEIERALAAAYAQDFVDKLPLGLDTPI-GENGVLLSGGQRQR----LAIARALLKDAPILILDEATSALD 501 (571)
T ss_pred CCC--CC--HHHHHHHHHHcChHHHHHhCcCccccee-cCCCCcCCHHHHHH----HHHHHHHhcCCCEEEEeCccccCC
Confidence 211 10 12222233322211 121101 11234699999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
..+. .+.+.|+.+.+++++ +..+|...-..+|| .+..++.|++++.++.+..
T Consensus 502 ~~~~~~i~~~L~~~~~~~ti-IiitH~~~~~~~~D-~ii~l~~g~i~~~g~~~~l 554 (571)
T TIGR02203 502 NESERLVQAALERLMQGRTT-LVIAHRLSTIEKAD-RIVVMDDGRIVERGTHNEL 554 (571)
T ss_pred HHHHHHHHHHHHHHhCCCEE-EEEehhhHHHHhCC-EEEEEeCCEEEeeCCHHHH
Confidence 9999 899999998776543 33355555555555 4455567788776665443
No 334
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.69 E-value=3.8e-17 Score=178.83 Aligned_cols=153 Identities=18% Similarity=0.118 Sum_probs=113.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++++|++++|+|++|||||||+|+|+|... .|.+.++|.....-...++..++|++|...+|+. +..+|+..|.-
T Consensus 357 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~---TI~eNI~~g~~ 433 (529)
T TIGR02868 357 DLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDT---TVRDNLRLGRP 433 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccc---cHHHHHhccCC
Confidence 578999999999999999999999999987 7999999976432233456789999999998654 78889887632
Q ss_pred CcchhhhHHHHHHHHHHhCCcc--------chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRH--------VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPD 371 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~--------~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~ 371 (509)
... .+.+..+++..... ++.... ......|||||+|| ++||||++.+|+++ ||++||.
T Consensus 434 ~~~-----~e~i~~al~~a~l~~~i~~lp~GldT~i-ge~G~~LSGGQrQR----iaiARall~~~~iliLDE~TSaLD~ 503 (529)
T TIGR02868 434 DAT-----DEELWAALERVGLADWLRSLPDGLDTVL-GEGGARLSGGERQR----LALARALLADAPILLLDEPTEHLDA 503 (529)
T ss_pred CCC-----HHHHHHHHHHcCCHHHHHhCcccccchh-ccccCcCCHHHHHH----HHHHHHHhcCCCEEEEeCCcccCCH
Confidence 111 12222333332211 222111 12234699999999 99999999999998 9999999
Q ss_pred HHH-HHHHHHHHhhcCCccEE
Q 010472 372 ETR-AARIILKDFIDGKLPHF 391 (509)
Q Consensus 372 ~~r-~~~~lLkd~~~gkl~~~ 391 (509)
.+. .+.+.|..+..++++++
T Consensus 504 ~te~~I~~~l~~~~~~~TvIi 524 (529)
T TIGR02868 504 GTESELLEDLLAALSGKTVVV 524 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEE
Confidence 999 88899988877765544
No 335
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=5.3e-17 Score=181.25 Aligned_cols=164 Identities=16% Similarity=0.102 Sum_probs=118.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCc--cCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGL--VFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~--~~p~~~~~~~e~v~~g 301 (509)
.+.+|+++||+|+||||||||+++|+|... .|.+.+.+. ..++|++|... +.+.. +..+.+. .
T Consensus 334 ~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~igy~~Q~~~~~l~~~~--~~~~~~~-~ 400 (638)
T PRK10636 334 NLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG----------IKLGYFAQHQLEFLRADE--SPLQHLA-R 400 (638)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC----------EEEEEecCcchhhCCccc--hHHHHHH-H
Confidence 578999999999999999999999999976 687776531 14778877432 22222 2232221 1
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
..+. .....+...+..+++........+..||||++|| +.||++|+.+|.+| ||+|||+.++ .+
T Consensus 401 ~~~~-------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqR----l~La~~l~~~p~lLlLDEPt~~LD~~~~~~l 469 (638)
T PRK10636 401 LAPQ-------ELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKAR----LVLALIVWQRPNLLLLDEPTNHLDLDMRQAL 469 (638)
T ss_pred hCch-------hhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHH----HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 1110 1112334445555564324567788999999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccc
Q 010472 377 RIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELH 416 (509)
Q Consensus 377 ~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~ 416 (509)
..+|+++ .| +++...|++.....+++.+.++..|.++
T Consensus 470 ~~~L~~~-~g--tvi~vSHd~~~~~~~~d~i~~l~~G~i~ 506 (638)
T PRK10636 470 TEALIDF-EG--ALVVVSHDRHLLRSTTDDLYLVHDGKVE 506 (638)
T ss_pred HHHHHHc-CC--eEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999998 34 5666778888777767777777788876
No 336
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.69 E-value=3.4e-17 Score=185.20 Aligned_cols=182 Identities=14% Similarity=0.075 Sum_probs=130.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccc-cceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKH-FQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~-~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++++|+.++|+|+||||||||+++|+|++. .|.+.++|.... .....++..++|++|...+|+ .+..+|+..+.
T Consensus 496 ~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~---gTI~eNi~l~~ 572 (708)
T TIGR01193 496 TIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFS---GSILENLLLGA 572 (708)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehh---HHHHHHHhccC
Confidence 578999999999999999999999999987 799999997643 222345678999999988865 47888888763
Q ss_pred CCcchhhhHHHHHHHHHHhCCc--------cchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPR--------HVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~--------~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
.+... + +.+..+++.... .++.. ........|||||+|| ++||||++++|+++ ||++||
T Consensus 573 ~~~~~--~--~~i~~a~~~a~l~~~i~~lp~gldt-~i~e~G~~LSgGQrQR----ialARall~~p~iliLDE~Ts~LD 643 (708)
T TIGR01193 573 KENVS--Q--DEIWAACEIAEIKDDIENMPLGYQT-ELSEEGSSISGGQKQR----IALARALLTDSKVLILDESTSNLD 643 (708)
T ss_pred CCCCC--H--HHHHHHHHHhCCHHHHHhcccccCc-EecCCCCCCCHHHHHH----HHHHHHHhhCCCEEEEeCccccCC
Confidence 22111 1 112222222221 12211 1112345699999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
..+. .+.+.|+.+ .++ +++...|..+..+.| +.+.+++.|++++.++.+
T Consensus 644 ~~te~~i~~~L~~~-~~~-T~IiitHr~~~~~~~-D~i~~l~~G~i~~~G~~~ 693 (708)
T TIGR01193 644 TITEKKIVNNLLNL-QDK-TIIFVAHRLSVAKQS-DKIIVLDHGKIIEQGSHD 693 (708)
T ss_pred HHHHHHHHHHHHHh-cCC-EEEEEecchHHHHcC-CEEEEEECCEEEEECCHH
Confidence 9998 888888876 454 456667777766654 556667888888766543
No 337
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.68 E-value=5.2e-17 Score=179.96 Aligned_cols=182 Identities=20% Similarity=0.191 Sum_probs=128.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
.+++|++++|+|+||+|||||+++|+|+.. .|.+.++|..... ....++..++|++|...+|+ .+..+|+..+.
T Consensus 357 ~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~---~Ti~~Ni~~~~ 433 (588)
T PRK13657 357 EAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFN---RSIEDNIRVGR 433 (588)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCccccc---ccHHHHHhcCC
Confidence 578999999999999999999999999987 7999999976542 22234677999999888865 36788887763
Q ss_pred CCcchhhhHHHHHHHHHHh------CCc--cchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 303 LPIDRMTEHRQAVQVVANR------VPR--HVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~------l~~--~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
.... + +.+..+++. +.. .++.... ......|||||+|| ++|||||+.+|+++ ||++||
T Consensus 434 ~~~~---d--~~i~~al~~~~l~~~i~~lp~gldt~i-~~~g~~LSgGq~QR----ialARall~~~~iliLDEpts~LD 503 (588)
T PRK13657 434 PDAT---D--EEMRAAAERAQAHDFIERKPDGYDTVV-GERGRQLSGGERQR----LAIARALLKDPPILILDEATSALD 503 (588)
T ss_pred CCCC---H--HHHHHHHHHhCHHHHHHhCcccccchh-cCCCCCCCHHHHHH----HHHHHHHhcCCCEEEEeCCccCCC
Confidence 2111 1 112222222 111 1233211 22245699999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
+.+. .+.+.|+.+..++ +++..+|.....++ +|.+..++.|++++.+..+
T Consensus 504 ~~t~~~i~~~l~~~~~~~-tvIiitHr~~~~~~-~D~ii~l~~G~i~~~g~~~ 554 (588)
T PRK13657 504 VETEAKVKAALDELMKGR-TTFIIAHRLSTVRN-ADRILVFDNGRVVESGSFD 554 (588)
T ss_pred HHHHHHHHHHHHHHhcCC-EEEEEEecHHHHHh-CCEEEEEECCEEEEeCCHH
Confidence 9999 8889998886654 34445555555665 4456666778887655543
No 338
>PRK13409 putative ATPase RIL; Provisional
Probab=99.68 E-value=3.2e-17 Score=181.06 Aligned_cols=171 Identities=12% Similarity=0.075 Sum_probs=119.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEe-----------eCCcccccce--e-eecCeEEEEeCCCccCCC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTS-----------TPGKTKHFQT--L-IISEKLVLCDCPGLVFPS 289 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~-----------~~G~t~~~~~--~-~~~~~i~l~d~pg~~~p~ 289 (509)
.+.+|+++||+|+||+|||||+++|+|++. .|.+. +.|....... . .....+.+..+--..+|.
T Consensus 95 ~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~ 174 (590)
T PRK13409 95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPK 174 (590)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhh
Confidence 578999999999999999999999999976 67775 5565432100 0 001112222221111222
Q ss_pred C-cccHHHHHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----
Q 010472 290 F-SISRYDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV---- 364 (509)
Q Consensus 290 ~-~~~~~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL---- 364 (509)
+ ..++.+++.. .+ ....+.+.+..++|.. +..+.+..|||||+|| ++||+||+.+|.++
T Consensus 175 ~~~~tv~e~l~~--------~~---~~~~~~~~l~~l~l~~-~~~~~~~~LSgGe~qr----v~ia~al~~~p~lllLDE 238 (590)
T PRK13409 175 VFKGKVRELLKK--------VD---ERGKLDEVVERLGLEN-ILDRDISELSGGELQR----VAIAAALLRDADFYFFDE 238 (590)
T ss_pred hhcchHHHHHHh--------hh---HHHHHHHHHHHcCCch-hhcCChhhCCHHHHHH----HHHHHHHhcCCCEEEEEC
Confidence 1 1233333321 01 1122334444445655 5567888999999999 99999999999998
Q ss_pred eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhccc
Q 010472 365 ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLL 413 (509)
Q Consensus 365 PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~ 413 (509)
||++||+..+ .+..+|+.+.+ +..++...|++....+.++.+.+++++
T Consensus 239 Pts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 239 PTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred CCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999 99999999988 777889999999988887777887764
No 339
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.68 E-value=7.7e-17 Score=193.01 Aligned_cols=189 Identities=11% Similarity=0.045 Sum_probs=130.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCC------cceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQK------RTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVA 299 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~------~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~ 299 (509)
.+.+|++++|+|+||||||||||+|+|.. ..|.+.+.|..........+..++++.|...++|.+ ++.+++.
T Consensus 83 ~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l--TV~E~l~ 160 (1394)
T TIGR00956 83 LIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL--TVGETLD 160 (1394)
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC--CHHHHHH
Confidence 46789999999999999999999999985 279999999764321122345689999988888888 5555554
Q ss_pred hccC---Ccc---hhhhHHHHHHH-HHHhCCccchhhHhh-----ccCCCCCCccccCCCchHHHHHHHHHHcCCce---
Q 010472 300 SGVL---PID---RMTEHRQAVQV-VANRVPRHVIENVCK-----INLPKPKPYESQSRPPLALELLRAYCASRGYV--- 364 (509)
Q Consensus 300 ~g~~---~~~---~~~~~~~~~~~-i~~~l~~~~L~~~~~-----~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL--- 364 (509)
.+.. +.. .. ...+..+. +...+..++|.+ .. ...+..|||||||| +.||++|+.+|.++
T Consensus 161 f~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~lgL~~-~~~t~vg~~~~~~LSGGerkR----vsIA~aL~~~p~vlllD 234 (1394)
T TIGR00956 161 FAARCKTPQNRPDGV-SREEYAKHIADVYMATYGLSH-TRNTKVGNDFVRGVSGGERKR----VSIAEASLGGAKIQCWD 234 (1394)
T ss_pred HHHHhCCCCCCCCCC-CHHHHHHHHHHHHHHHcCccc-ccCceeCCCcCCCCCcccchH----HHHHHHHHhCCCEEEEe
Confidence 4321 110 11 11111111 122334445554 22 23456799999999 99999999999998
Q ss_pred -eCCCCCHHHH-HHHHHHHHhhc-CCccEEEcCCCC-ChhhccchhhHhhcccccccCCCCc
Q 010472 365 -ASSGLPDETR-AARIILKDFID-GKLPHFEMPPGM-SHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 365 -PtsGLD~~~r-~~~~lLkd~~~-gkl~~~~~pp~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
||+|||..++ .+.++|+++.+ .+.+++...|.. .......+.+.++..|+++..++.+
T Consensus 235 EPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~ 296 (1394)
T TIGR00956 235 NATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPAD 296 (1394)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHH
Confidence 9999999999 99999999975 234444445554 3444456666677778887776654
No 340
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.68 E-value=5.4e-17 Score=179.31 Aligned_cols=182 Identities=14% Similarity=0.132 Sum_probs=129.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++++|+.++|+|+||+|||||+++|+|+.. .|.+.++|...+. ....++..++|++|...+|+. +..+|+..+.
T Consensus 362 ~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~---Ti~~Ni~~~~ 438 (576)
T TIGR02204 362 TVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAA---SVMENIRYGR 438 (576)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccc---cHHHHHhcCC
Confidence 578999999999999999999999999987 7999999976432 122345679999998888654 6788887653
Q ss_pred CCcchhhhHHHHHHHHHHhCCcc--------chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRH--------VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~--------~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
-... .+.+..+++..+.. ++.. ........|||||+|| ++||||++.+|+++ ||++||
T Consensus 439 ~~~~-----~~~~~~~l~~~~l~~~i~~l~~gl~t-~i~~~g~~LSgGq~Qr----l~laRal~~~~~ililDEpts~lD 508 (576)
T TIGR02204 439 PDAT-----DEEVEAAARAAHAHEFISALPEGYDT-YLGERGVTLSGGQRQR----IAIARAILKDAPILLLDEATSALD 508 (576)
T ss_pred CCCC-----HHHHHHHHHHcCcHHHHHhCCCCCCc-eeCCCCCcCCHHHHHH----HHHHHHHHhCCCeEEEeCcccccC
Confidence 1111 11222222222211 2221 1112245699999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
+.++ .+.+.|+++..+ .+++..+|....... ++.+..++.|++++.++.+
T Consensus 509 ~~~~~~i~~~l~~~~~~-~t~IiitH~~~~~~~-~d~vi~l~~g~~~~~g~~~ 559 (576)
T TIGR02204 509 AESEQLVQQALETLMKG-RTTLIIAHRLATVLK-ADRIVVMDQGRIVAQGTHA 559 (576)
T ss_pred HHHHHHHHHHHHHHhCC-CEEEEEecchHHHHh-CCEEEEEECCEEEeeecHH
Confidence 9999 889999998765 455555666655555 4556667778887765543
No 341
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.68 E-value=3.5e-17 Score=184.69 Aligned_cols=182 Identities=14% Similarity=0.081 Sum_probs=131.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
.+++|+.++|+|+||+|||||+++|+|+.. .|.+.++|..... ....++..+++++|...+|+ .+..+|+..+.
T Consensus 479 ~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~---~ti~eNi~~~~ 555 (694)
T TIGR01846 479 DIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFS---RSIRDNIALCN 555 (694)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehh---hhHHHHHhcCC
Confidence 578999999999999999999999999987 7999999976432 22345667999999888865 36788887653
Q ss_pred CCcchhhhHHHHHHHHHHhCCc--------cchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPR--------HVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~--------~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
... . .+.+..+++.... .++.. ........|||||+|| ++|||||+.+|+++ ||++||
T Consensus 556 ~~~-~----~~~i~~a~~~~~l~~~i~~lp~gl~t-~i~~~g~~LSgGq~qr----i~lARall~~~~ililDEpts~LD 625 (694)
T TIGR01846 556 PGA-P----FEHVIHAAKLAGAHDFISELPQGYNT-EVGEKGANLSGGQRQR----IAIARALVGNPRILIFDEATSALD 625 (694)
T ss_pred CCC-C----HHHHHHHHHHcChHHHHHhCcCccCc-EecCCCCCCCHHHHHH----HHHHHHHHhCCCEEEEECCCcCCC
Confidence 111 1 1111222222111 12222 1122345799999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
+.+. .+.+.|+.+..++ +++..+|..+.... ++.+.+++.|++++.++.+
T Consensus 626 ~~~~~~i~~~l~~~~~~~-t~i~itH~~~~~~~-~d~ii~l~~G~i~~~g~~~ 676 (694)
T TIGR01846 626 YESEALIMRNMREICRGR-TVIIIAHRLSTVRA-CDRIIVLEKGQIAESGRHE 676 (694)
T ss_pred HHHHHHHHHHHHHHhCCC-EEEEEeCChHHHHh-CCEEEEEeCCEEEEeCCHH
Confidence 9999 9999999986654 56666677666666 5566777888888766543
No 342
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.68 E-value=7.4e-17 Score=178.64 Aligned_cols=185 Identities=16% Similarity=0.072 Sum_probs=129.5
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
.+++|++++|+|+||+|||||+++|+|... .|.+.++|..... ....++..+++++|...+|+ .+..+++..+.
T Consensus 357 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~---~ti~~Ni~~~~ 433 (585)
T TIGR01192 357 EAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFN---RSIRENIRLGR 433 (585)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCc---ccHHHHHhcCC
Confidence 578999999999999999999999999987 7999999876432 22234567899999887765 36778887763
Q ss_pred CCcchhhhHHHHHHH--HHHhCCc--cchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 303 LPIDRMTEHRQAVQV--VANRVPR--HVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~--i~~~l~~--~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
... ...+.....+. +.+.+.. .++.. ........|||||+|| ++|||||+.+|+++ ||++||..++
T Consensus 434 ~~~-~~~~~~~a~~~~~~~~~i~~l~~g~~t-~~~~~~~~LSgGq~qr----l~lARall~~p~ililDEpts~LD~~~~ 507 (585)
T TIGR01192 434 EGA-TDEEVYEAAKAAAAHDFILKRSNGYDT-LVGERGNRLSGGERQR----LAIARAILKNAPILVLDEATSALDVETE 507 (585)
T ss_pred CCC-CHHHHHHHHHHhCcHHHHHhccccccc-hhcCCCCCCCHHHHHH----HHHHHHHhcCCCEEEEECCccCCCHHHH
Confidence 211 11111111111 1111111 12222 2223456799999999 99999999999998 9999999999
Q ss_pred -HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 375 -AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 375 -~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
.+.+.|..+..+++ ++..+|..+.... ++.+.+++.|++++.++.
T Consensus 508 ~~i~~~l~~~~~~~t-vI~isH~~~~~~~-~d~i~~l~~G~i~~~g~~ 553 (585)
T TIGR01192 508 ARVKNAIDALRKNRT-TFIIAHRLSTVRN-ADLVLFLDQGRLIEKGSF 553 (585)
T ss_pred HHHHHHHHHHhCCCE-EEEEEcChHHHHc-CCEEEEEECCEEEEECCH
Confidence 99999998876654 4555666666655 566677788888765544
No 343
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.68 E-value=1e-16 Score=176.43 Aligned_cols=170 Identities=11% Similarity=0.013 Sum_probs=121.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||||||||+++|+|+.. .|.+.+.+ ...++|++|...+++.+ ++.+++..++.
T Consensus 27 ~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~----------~~~i~~v~Q~~~~~~~~--tv~e~i~~~~~ 94 (552)
T TIGR03719 27 SFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP----------GIKVGYLPQEPQLDPTK--TVRENVEEGVA 94 (552)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC----------CCEEEEEeccCCCCCCC--cHHHHHHHhhH
Confidence 578999999999999999999999999976 67777654 13588888876667766 55666654321
Q ss_pred Ccc--------------hhhhH-------HHH-------------HHHHHHhCCccchhhHhhccCCCCCCccccCCCch
Q 010472 304 PID--------------RMTEH-------RQA-------------VQVVANRVPRHVIENVCKINLPKPKPYESQSRPPL 349 (509)
Q Consensus 304 ~~~--------------~~~~~-------~~~-------------~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~ 349 (509)
... ..... ... ...+.+.+..+++.. ....+..|||||+||
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkqr--- 169 (552)
T TIGR03719 95 EIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP--WDADVTKLSGGERRR--- 169 (552)
T ss_pred HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc--ccCchhhcCHHHHHH---
Confidence 000 00000 000 011222333333421 245677899999999
Q ss_pred HHHHHHHHHHcCCce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccc
Q 010472 350 ALELLRAYCASRGYV----ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELH 416 (509)
Q Consensus 350 ~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~ 416 (509)
++||+||+.+|.+| ||++||+.++ .+.++|+++. + +++..+|++.....+++.+.+++.|+++
T Consensus 170 -v~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~--~-tvIiisHd~~~~~~~~d~v~~l~~g~i~ 237 (552)
T TIGR03719 170 -VALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP--G-TVVAVTHDRYFLDNVAGWILELDRGRGI 237 (552)
T ss_pred -HHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC--C-eEEEEeCCHHHHHhhcCeEEEEECCEEE
Confidence 99999999999988 9999999999 9999998873 2 6777888888888777788888888765
No 344
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.67 E-value=8.5e-17 Score=146.51 Aligned_cols=115 Identities=15% Similarity=0.109 Sum_probs=92.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
.+.+|++++|+|+||+|||||+++|+|+.+ .|.+.+.|. ..++|+++
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----------~~i~~~~~--------------------- 70 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----------VKIGYFEQ--------------------- 70 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----------EEEEEEcc---------------------
Confidence 467899999999999999999999999986 777777762 12334333
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
||+|++|| ++||+|++.+|.++ |++|||..++ .+..
T Consensus 71 -----------------------------------lS~G~~~r----v~laral~~~p~illlDEP~~~LD~~~~~~l~~ 111 (144)
T cd03221 71 -----------------------------------LSGGEKMR----LALAKLLLENPNLLLLDEPTNHLDLESIEALEE 111 (144)
T ss_pred -----------------------------------CCHHHHHH----HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 99999999 99999999999998 9999999999 8999
Q ss_pred HHHHhhcCCccEEEcCCCCChhhccchhhHhhccc
Q 010472 379 ILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLL 413 (509)
Q Consensus 379 lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~ 413 (509)
+|+.+ + ..++...|........++.+.+++.|
T Consensus 112 ~l~~~--~-~til~~th~~~~~~~~~d~v~~l~~g 143 (144)
T cd03221 112 ALKEY--P-GTVILVSHDRYFLDQVATKIIELEDG 143 (144)
T ss_pred HHHHc--C-CEEEEEECCHHHHHHhCCEEEEEeCC
Confidence 99887 2 35666777777765555555555444
No 345
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.7e-16 Score=151.56 Aligned_cols=198 Identities=10% Similarity=0.002 Sum_probs=144.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc----ceEEeeCCcccccce--eeecCeEEEEeCCCccCCCCcccHHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR----TGVTSTPGKTKHFQT--LIISEKLVLCDCPGLVFPSFSISRYDMVA 299 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~----~g~~~~~G~t~~~~~--~~~~~~i~l~d~pg~~~p~~~~~~~e~v~ 299 (509)
+++.|++.+|+||||||||||.++|+|... .|.+.+.|.....-. -+.+..+.+..|-+.-+|..+...+....
T Consensus 26 ~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a 105 (251)
T COG0396 26 TVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAA 105 (251)
T ss_pred eEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHH
Confidence 478899999999999999999999999864 799999997643322 23456788888877777777544443333
Q ss_pred hccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCC-CCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 300 SGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLP-KPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~-~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
.......... ..+....+.+.+..+++...|..+.. .-+|||++.| .+|+.+++.+|++. |-||||..+-
T Consensus 106 ~n~~~~~~~~-~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR----~EilQ~~~lePkl~ILDE~DSGLDIdal 180 (251)
T COG0396 106 MNARRGARGI-LPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKR----NEILQLLLLEPKLAILDEPDSGLDIDAL 180 (251)
T ss_pred HHhhhccccc-cHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHH----HHHHHHHhcCCCEEEecCCCcCccHHHH
Confidence 2221111000 12333444444444455554555543 4599999999 99999999999987 9999998887
Q ss_pred -HHHHHHHHhhcCCccEEEcCCCCChhhcc-chhhHhhcccccccCCCCccccCcC
Q 010472 375 -AARIILKDFIDGKLPHFEMPPGMSHEEVG-MEDTQASSLLELHESDASDAEEVPA 428 (509)
Q Consensus 375 -~~~~lLkd~~~gkl~~~~~pp~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (509)
.+...|+.+++....++..+|+-.-..|. .+.+-++..|+|+..+..++-.+-+
T Consensus 181 k~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~el~~~le 236 (251)
T COG0396 181 KIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDPELAEELE 236 (251)
T ss_pred HHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCHHHHHHHH
Confidence 88999999999888899999998888887 4777788888888877776655443
No 346
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.67 E-value=1.1e-16 Score=181.02 Aligned_cols=179 Identities=15% Similarity=0.091 Sum_probs=126.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++++|++++|+|+||+|||||+++|+|+.. .|.+.++|..... ....++..++++.|...+|+ .+..+|+..|.
T Consensus 503 ~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~---gTIreNI~~g~ 579 (711)
T TIGR00958 503 TLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFS---GSVRENIAYGL 579 (711)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccc---cCHHHHHhcCC
Confidence 578999999999999999999999999987 7999999976432 22335667999999888865 47888998774
Q ss_pred CCcchhhhHHHHHHHHHHhCCcc--------chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRH--------VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~--------~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
-... .+.+..+++..... ++.. ........|||||+|| ++||||++++|+++ ||++||
T Consensus 580 ~~~~-----~e~i~~al~~a~l~~~i~~lp~GldT-~ige~G~~LSGGQkQR----lalARALl~~p~ILILDEpTSaLD 649 (711)
T TIGR00958 580 TDTP-----DEEIMAAAKAANAHDFIMEFPNGYDT-EVGEKGSQLSGGQKQR----IAIARALVRKPRVLILDEATSALD 649 (711)
T ss_pred CCCC-----HHHHHHHHHHcCCHHHHHhCCCccCC-cccCCCCcCCHHHHHH----HHHHHHHhcCCCEEEEEccccccC
Confidence 3211 12222333332211 1211 1112234699999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
..+. .+.+ .. ...+ .+++...|..+..+. +|.+.+++.|++++.++.
T Consensus 650 ~~te~~i~~-~~-~~~~-~TvIiItHrl~~i~~-aD~IivL~~G~ive~Gt~ 697 (711)
T TIGR00958 650 AECEQLLQE-SR-SRAS-RTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTH 697 (711)
T ss_pred HHHHHHHHH-hh-ccCC-CeEEEEeccHHHHHh-CCEEEEEECCEEEEeeCH
Confidence 9888 6666 22 2233 456666677666655 556667788888876554
No 347
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.2e-16 Score=168.40 Aligned_cols=183 Identities=15% Similarity=0.100 Sum_probs=132.5
Q ss_pred ccCCCCcEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 225 NVAPKNVIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 225 ~~i~~g~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
-++++|+.+||||.|||||||+||+|.+... +|.+.++|..... ....+++.|++++|...+|.. +...|+..|.
T Consensus 373 f~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd---TIl~NI~YGn 449 (591)
T KOG0057|consen 373 FTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND---TILYNIKYGN 449 (591)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcccccch---hHHHHhhcCC
Confidence 3689999999999999999999999999887 9999999987543 333467789999999999654 7888898886
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchhhH----h---hccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCH
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIENV----C---KINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPD 371 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~----~---~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~ 371 (509)
.... .+.+-.++++.+.++.-.. | --.....|||||+|| ++|+||+..++.++ ||+.||.
T Consensus 450 ~sas-----~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQr----vslaRa~lKda~Il~~DEaTS~LD~ 520 (591)
T KOG0057|consen 450 PSAS-----DEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQR----VSLARAFLKDAPILLLDEATSALDS 520 (591)
T ss_pred CCcC-----HHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHH----HHHHHHHhcCCCeEEecCcccccch
Confidence 5432 1233334444332221110 1 112234699999999 99999999999998 9999999
Q ss_pred HHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 372 ETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 372 ~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
.+. .+...|.+...++++++ .-|..+-...||+ +.+++.|+..+.+..
T Consensus 521 ~TE~~i~~~i~~~~~~rTvI~-IvH~l~ll~~~Dk-I~~l~nG~v~e~gth 569 (591)
T KOG0057|consen 521 ETEREILDMIMDVMSGRTVIM-IVHRLDLLKDFDK-IIVLDNGTVKEYGTH 569 (591)
T ss_pred hhHHHHHHHHHHhcCCCeEEE-EEecchhHhcCCE-EEEEECCeeEEeccH
Confidence 988 88888888667776544 3455555666554 445566666665544
No 348
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.67 E-value=3.7e-16 Score=162.59 Aligned_cols=184 Identities=26% Similarity=0.314 Sum_probs=125.5
Q ss_pred HHHHHHHhhhcCcccc-C--cccccHHHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCC
Q 010472 47 WRRSLARLEENEKLVL-T--PFEKNLDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKAD 123 (509)
Q Consensus 47 wr~~l~~~~e~~~~~l-t--~fE~nle~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~D 123 (509)
|...-..+.+++|+.. + +|++ .++.|...+++.+|+||+|||+|..++.....+..++. ..+||+|||+||+|
T Consensus 48 ~~~~~f~lIDTgGl~~~~~~~l~~--~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr--~~~kpviLvvNK~D 123 (444)
T COG1160 48 WLGREFILIDTGGLDDGDEDELQE--LIREQALIAIEEADVILFVVDGREGITPADEEIAKILR--RSKKPVILVVNKID 123 (444)
T ss_pred EcCceEEEEECCCCCcCCchHHHH--HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH--hcCCCEEEEEEccc
Confidence 4444455567777652 3 4554 59999999999999999999999988633333333333 24699999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCe-EEEeehhhhHHhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHH
Q 010472 124 LLPFSVRKRWAKYFKDHDIL-FVFWSAKAASAALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMR 202 (509)
Q Consensus 124 L~p~~~~~~W~~yf~~~gi~-~if~Sa~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r 202 (509)
-...+ .-...|.+.|+. .+.+||. ||.++ .+|++.+-+... . .
T Consensus 124 ~~~~e---~~~~efyslG~g~~~~ISA~------Hg~Gi-----------------------~dLld~v~~~l~-~-~-- 167 (444)
T COG1160 124 NLKAE---ELAYEFYSLGFGEPVPISAE------HGRGI-----------------------GDLLDAVLELLP-P-D-- 167 (444)
T ss_pred Cchhh---hhHHHHHhcCCCCceEeehh------hccCH-----------------------HHHHHHHHhhcC-C-c--
Confidence 88432 223445567765 3447763 66654 466666554320 0 0
Q ss_pred hhcCCCCCCCCCcccccccccCccCCCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee---cCeEEE
Q 010472 203 RQAGCSSTGKSNVQSVDESFAGNVAPKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII---SEKLVL 279 (509)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~---~~~i~l 279 (509)
.+. .......+..+||||.||+|||||+|.|+|..+.-+...+|+|++.-...+ .+.+.+
T Consensus 168 -----e~~------------~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~l 230 (444)
T COG1160 168 -----EEE------------EEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVL 230 (444)
T ss_pred -----ccc------------cccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEE
Confidence 000 000002457899999999999999999999999999999999987644332 356899
Q ss_pred EeCCCccC
Q 010472 280 CDCPGLVF 287 (509)
Q Consensus 280 ~d~pg~~~ 287 (509)
+||.|+.-
T Consensus 231 iDTAGiRr 238 (444)
T COG1160 231 IDTAGIRR 238 (444)
T ss_pred EECCCCCc
Confidence 99999863
No 349
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.66 E-value=2.5e-16 Score=141.14 Aligned_cols=167 Identities=16% Similarity=0.151 Sum_probs=127.0
Q ss_pred ccCCCCcEEEEEecCCCCHhHHHHHHhcCCc-----ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHH
Q 010472 225 NVAPKNVIVGFVGYPNVGKSSTINALVGQKR-----TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVA 299 (509)
Q Consensus 225 ~~i~~g~~vglvG~nGaGKSTLln~L~G~~~-----~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~ 299 (509)
-++.+|+++.|+||+|||||||+.-+.|.+. .|.+.+.++..+.-.. ..+.++++.|..++||.+ ++.++++
T Consensus 23 ~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa-~qRq~GiLFQD~lLFphl--sVg~Nl~ 99 (213)
T COG4136 23 FTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA-AQRQIGILFQDALLFPHL--SVGQNLL 99 (213)
T ss_pred EEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch-hhhheeeeeccccccccc--ccccceE
Confidence 3578999999999999999999999999875 6888888876544322 245789999999999999 4556666
Q ss_pred hccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-
Q 010472 300 SGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR- 374 (509)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r- 374 (509)
+.+-+.-... .....+...+.+.+|.. +-...|.++||||+-| +++.|+|...|+++ |++.||...|
T Consensus 100 fAlp~~~KG~---aRr~~a~aAL~~~gL~g-~f~~dP~tlSGGQrAR----vaL~R~Lla~Pk~lLLDEPFS~LD~ALR~ 171 (213)
T COG4136 100 FALPATLKGN---ARRNAANAALERSGLDG-AFHQDPATLSGGQRAR----VALLRALLAQPKALLLDEPFSRLDVALRD 171 (213)
T ss_pred EecCcccccH---HHHhhHHHHHHHhccch-hhhcChhhcCcchHHH----HHHHHHHHhCcceeeeCCchhHHHHHHHH
Confidence 6543321111 22333444555556766 4467789999999999 99999999999987 9999999998
Q ss_pred HHHHHH-HHhhcCCccEEEcCCCCChhhc
Q 010472 375 AARIIL-KDFIDGKLPHFEMPPGMSHEEV 402 (509)
Q Consensus 375 ~~~~lL-kd~~~gkl~~~~~pp~~~~~~~ 402 (509)
.+++++ .+.+.-.+..+..+|+..+.+.
T Consensus 172 qfR~wVFs~~r~agiPtv~VTHD~~Dvpa 200 (213)
T COG4136 172 QFRQWVFSEVRAAGIPTVQVTHDLQDVPA 200 (213)
T ss_pred HHHHHHHHHHHhcCCCeEEEecccccCCC
Confidence 887766 4566778888888888777663
No 350
>PRK12288 GTPase RsgA; Reviewed
Probab=99.66 E-value=1.2e-15 Score=157.85 Aligned_cols=146 Identities=26% Similarity=0.259 Sum_probs=104.4
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-cCCcEEEEEeCCCCCCHH---HHHHHHHHHHhcCCeEEEeehhhh
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREID-KYKRTLLLVNKADLLPFS---VRKRWAKYFKDHDILFVFWSAKAA 152 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-~~K~~iLVlNK~DL~p~~---~~~~W~~yf~~~gi~~if~Sa~~~ 152 (509)
-++.++|.+++|.+. .|.++. ..+++|+..+. .+.+.+||+||+||++.. ....|.++|...|+.++++||.
T Consensus 116 ~iaANvD~vlIV~s~-~p~~s~-~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~-- 191 (347)
T PRK12288 116 PIAANIDQIVIVSAV-LPELSL-NIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSH-- 191 (347)
T ss_pred eEEEEccEEEEEEeC-CCCCCH-HHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCC--
Confidence 356899998888775 566544 35677875443 468999999999999854 3567889998889888888875
Q ss_pred HHhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccccccCccCCCCcE
Q 010472 153 SAALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVDESFAGNVAPKNVI 232 (509)
Q Consensus 153 ~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~ 232 (509)
.+. |.++|.+.|. +.+
T Consensus 192 ----tg~-----------------------GideL~~~L~-------------------------------------~ki 207 (347)
T PRK12288 192 ----TGE-----------------------GLEELEAALT-------------------------------------GRI 207 (347)
T ss_pred ----CCc-----------------------CHHHHHHHHh-------------------------------------hCC
Confidence 222 3445555442 236
Q ss_pred EEEEecCCCCHhHHHHHHhcCCcceEEeeCC-------cccccceeeecCeEEEEeCCCccCCCC
Q 010472 233 VGFVGYPNVGKSSTINALVGQKRTGVTSTPG-------KTKHFQTLIISEKLVLCDCPGLVFPSF 290 (509)
Q Consensus 233 vglvG~nGaGKSTLln~L~G~~~~g~~~~~G-------~t~~~~~~~~~~~i~l~d~pg~~~p~~ 290 (509)
++|+|+||||||||||+|+|.....++.+++ +|++.+.+.+.....++||||+.--.+
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~~liDTPGir~~~l 272 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGGDLIDSPGVREFGL 272 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCCEEEECCCCCcccC
Confidence 7899999999999999999987644444443 344455555655667999999875444
No 351
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=1.5e-16 Score=177.69 Aligned_cols=172 Identities=16% Similarity=0.088 Sum_probs=116.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
.+.+|+++||||+|||||||||++|+|... .|.+.+.|.. .++++.+....+. . +....+..+..
T Consensus 23 ~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~----------~i~~~~q~~~~~~-~--~~~~~v~~~~~ 89 (638)
T PRK10636 23 TINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW----------QLAWVNQETPALP-Q--PALEYVIDGDR 89 (638)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC----------EEEEEecCCCCCC-C--CHHHHHHHhhH
Confidence 578999999999999999999999999875 7888887642 2444444211111 0 11111110000
Q ss_pred ----------------C---cchhhh------HHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHH
Q 010472 304 ----------------P---IDRMTE------HRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYC 358 (509)
Q Consensus 304 ----------------~---~~~~~~------~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa 358 (509)
. ...... .......+...+..++|........+..||||++|| ++||+||+
T Consensus 90 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqR----v~LA~aL~ 165 (638)
T PRK10636 90 EYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMR----LNLAQALI 165 (638)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHH----HHHHHHHc
Confidence 0 000000 001122344555556664224456788999999999 99999999
Q ss_pred HcCCce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhccccccc
Q 010472 359 ASRGYV----ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHE 417 (509)
Q Consensus 359 ~~p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~ 417 (509)
.+|.+| ||+|||..++ .+..+|+.+ + .+++...|+......+++.+..++.|.+..
T Consensus 166 ~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~-~tviivsHd~~~l~~~~d~i~~L~~G~i~~ 226 (638)
T PRK10636 166 CRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--Q-GTLILISHDRDFLDPIVDKIIHIEQQSLFE 226 (638)
T ss_pred cCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--C-CeEEEEeCCHHHHHHhcCEEEEEeCCEEEE
Confidence 999998 9999999999 888999887 2 356677888888777777888888888864
No 352
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.65 E-value=1.3e-16 Score=174.57 Aligned_cols=166 Identities=15% Similarity=0.144 Sum_probs=119.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
.+++|++++|+|+||+|||||+++|+|+.. .|.+.++|..... ....+++.+++++|...+|+ .+..+|+..+.
T Consensus 344 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~---~ti~~Ni~~~~ 420 (529)
T TIGR02857 344 TVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFA---GTIAENIRLAR 420 (529)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccC---cCHHHHHhccC
Confidence 678999999999999999999999999987 7999999976432 22335667999999988875 37788887763
Q ss_pred CCcchhhhHHHHHHHHHHhCCcc--------chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRH--------VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~--------~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
.... + +.+..+++..... ++.. ........|||||+|| ++||||++++|+++ ||+++|
T Consensus 421 ~~~~---~--~~i~~a~~~~~l~~~i~~lp~Gldt-~v~e~g~~LSgGq~qr----i~laRal~~~~~ililDE~ts~lD 490 (529)
T TIGR02857 421 PDAS---D--AEIRRALERAGLDEFVAALPQGLDT-LIGEGGAGLSGGQAQR----LALARAFLRDAPLLLLDEPTAHLD 490 (529)
T ss_pred CCCC---H--HHHHHHHHHcCcHHHHHhCcccccc-hhccccccCCHHHHHH----HHHHHHHhcCCCEEEEeCcccccC
Confidence 2111 1 1222222222211 2222 1122345799999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccch
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGME 405 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~ 405 (509)
+.+. .+.+.|..+..++ +.+..+|.++....||+
T Consensus 491 ~~~~~~i~~~l~~~~~~~-t~i~itH~~~~~~~~d~ 525 (529)
T TIGR02857 491 AETEALVTEALRALAQGR-TVLLVTHRLALAERADR 525 (529)
T ss_pred HHHHHHHHHHHHHhcCCC-EEEEEecCHHHHHhCCE
Confidence 9999 8899999887654 44555566655555554
No 353
>PLN03073 ABC transporter F family; Provisional
Probab=99.65 E-value=3.5e-16 Score=175.99 Aligned_cols=165 Identities=12% Similarity=0.098 Sum_probs=117.5
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHH-hcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVA-SGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~-~g~ 302 (509)
.+.+|++++|+|+|||||||||++|+|+.. .|.+.+.+. ..++|++|... +.+.......+. ...
T Consensus 531 ~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~----------~~igyv~Q~~~--~~l~~~~~~~~~~~~~ 598 (718)
T PLN03073 531 GIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK----------VRMAVFSQHHV--DGLDLSSNPLLYMMRC 598 (718)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc----------eeEEEEecccc--ccCCcchhHHHHHHHh
Confidence 578999999999999999999999999976 677765431 24777777532 223222221111 111
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHH
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AAR 377 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~ 377 (509)
++. . . . ..+...+..+++........+..|||||+|| ++||+||+.+|.+| ||+|||+.++ .+.
T Consensus 599 ~~~--~-~-~---~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqR----vaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~ 667 (718)
T PLN03073 599 FPG--V-P-E---QKLRAHLGSFGVTGNLALQPMYTLSGGQKSR----VAFAKITFKKPHILLLDEPSNHLDLDAVEALI 667 (718)
T ss_pred cCC--C-C-H---HHHHHHHHHCCCChHHhcCCccccCHHHHHH----HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH
Confidence 111 0 0 1 2233444455565324566788999999999 99999999999998 9999999999 888
Q ss_pred HHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccc
Q 010472 378 IILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELH 416 (509)
Q Consensus 378 ~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~ 416 (509)
..|..+ .| +++..+|++.....+++.+.++..|.++
T Consensus 668 ~~L~~~-~g--tvIivSHd~~~i~~~~drv~~l~~G~i~ 703 (718)
T PLN03073 668 QGLVLF-QG--GVLMVSHDEHLISGSVDELWVVSEGKVT 703 (718)
T ss_pred HHHHHc-CC--EEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 888776 33 6777788888888777778888888876
No 354
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.64 E-value=2.9e-16 Score=143.83 Aligned_cols=194 Identities=14% Similarity=0.118 Sum_probs=137.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccc---ccce-------eeecCeEEEEeCCCccCCCCccc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTK---HFQT-------LIISEKLVLCDCPGLVFPSFSIS 293 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~---~~~~-------~~~~~~i~l~d~pg~~~p~~~~~ 293 (509)
.+.+|++.||||.+|||||||++||++.+. .|++.+.-.+. +.-. .-++...+++.|...-=-.+..+
T Consensus 28 ~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VS 107 (258)
T COG4107 28 DLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVS 107 (258)
T ss_pred eecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeec
Confidence 467999999999999999999999999876 67776643221 1110 01122345554422110001111
Q ss_pred HH----H-HHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----
Q 010472 294 RY----D-MVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV---- 364 (509)
Q Consensus 294 ~~----e-~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL---- 364 (509)
.- + .+..|.... -...+...+++..+.+.....+..|...|||++|| +.|||-|+..|.++
T Consensus 108 AG~NiGERlma~G~RHY------G~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQR----LQiARnLVt~PrLvfMDE 177 (258)
T COG4107 108 AGGNIGERLMAIGARHY------GNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQR----LQIARNLVTRPRLVFMDE 177 (258)
T ss_pred cCCccchhHHhhhhhhh------hhHHHHHHHHHHhcccCcccccCcccccchHHHHH----HHHHHHhccCCceEEecC
Confidence 11 1 122222211 12334455666666665545567789999999999 99999999999987
Q ss_pred eCCCCCHHHH-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCC
Q 010472 365 ASSGLPDETR-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAH 429 (509)
Q Consensus 365 PtsGLD~~~r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (509)
||+|||...+ .+.++++.+.. =.+..+..+|++..+...++..++|..|..++.+-+|..-.+..
T Consensus 178 PTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrvLDDP~ 244 (258)
T COG4107 178 PTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDDPH 244 (258)
T ss_pred CCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccccccccccCCC
Confidence 9999999888 89999999865 47888999999999999999999999999999988877655443
No 355
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.64 E-value=2e-16 Score=173.86 Aligned_cols=180 Identities=14% Similarity=0.065 Sum_probs=121.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
.+++|++++|+|+||+|||||+++|+|... .|.+.++|..... ....++..+++++|...+|+.. ..++ +
T Consensus 345 ~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~t---i~~n---~- 417 (547)
T PRK10522 345 TIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQL---LGPE---G- 417 (547)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHh---hccc---c-
Confidence 578999999999999999999999999986 8999999976432 2223456789999987776542 1122 1
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchhhHhhc--c--CCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIENVCKI--N--LPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~--~--~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
+ .. ..+.+..+.+.+ ++...... . ....|||||+|| ++||||++.+|+++ ||++||+.+.
T Consensus 418 -~--~~--~~~~~~~~~~~~---~l~~~~~~~~~~~~G~~LSgGq~qR----l~lARal~~~~~ililDE~ts~LD~~~~ 485 (547)
T PRK10522 418 -K--PA--NPALVEKWLERL---KMAHKLELEDGRISNLKLSKGQKKR----LALLLALAEERDILLLDEWAADQDPHFR 485 (547)
T ss_pred -C--ch--HHHHHHHHHHHc---CCchhhhccccCCCCCCCCHHHHHH----HHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 0 00 112222333333 33321111 1 134799999999 99999999999998 9999999999
Q ss_pred -HHHHHHHHhh-cCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcccc
Q 010472 375 -AARIILKDFI-DGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEE 425 (509)
Q Consensus 375 -~~~~lLkd~~-~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (509)
.+.+.|.+.. ..+.+++...|...... .++.+.+++.|++++.+..+.+.
T Consensus 486 ~~i~~~l~~~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~e~~~~~~~~ 537 (547)
T PRK10522 486 REFYQVLLPLLQEMGKTIFAISHDDHYFI-HADRLLEMRNGQLSELTGEERDA 537 (547)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEechHHHH-hCCEEEEEECCEEEEecCCchhh
Confidence 7777776553 22333444455554444 45667777888888765544443
No 356
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.64 E-value=4.3e-16 Score=174.58 Aligned_cols=160 Identities=13% Similarity=0.067 Sum_probs=112.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++++|++++|+|+||||||||+++|+|+.+ .|.+.+++ +..+++++|...+++. +..+++..+..
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~----------~~~i~~v~Q~~~l~~~---tv~eni~~~~~ 540 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA----------KGKLFYVPQRPYMTLG---TLRDQIIYPDS 540 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC----------CCcEEEECCCCCCCCc---CHHHHHhcCCC
Confidence 578999999999999999999999999976 56665542 3468889887776654 67777776542
Q ss_pred Ccch--hhhHHHHHHHHHHhCCccchhhHhhcc---------CCCCCCccccCCCchHHHHHHHHHHcCCce----eCCC
Q 010472 304 PIDR--MTEHRQAVQVVANRVPRHVIENVCKIN---------LPKPKPYESQSRPPLALELLRAYCASRGYV----ASSG 368 (509)
Q Consensus 304 ~~~~--~~~~~~~~~~i~~~l~~~~L~~~~~~~---------~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsG 368 (509)
.... .....+.+..+++.+ ++.+ +... ....|||||+|| ++||||++.+|+++ ||+|
T Consensus 541 ~~~~~~~~~~~~~i~~~l~~~---~l~~-~~~~~~g~~~~~~~~~~LSgGqkQR----l~iARal~~~p~illLDEpts~ 612 (659)
T TIGR00954 541 SEDMKRRGLSDKDLEQILDNV---QLTH-ILEREGGWSAVQDWMDVLSGGEKQR----IAMARLFYHKPQFAILDECTSA 612 (659)
T ss_pred hhhhhccCCCHHHHHHHHHHc---CCHH-HHhhcCCcccccccccCCCHHHHHH----HHHHHHHHcCCCEEEEeCCccC
Confidence 1100 000112223333333 3433 2111 236899999999 99999999999998 9999
Q ss_pred CCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHh
Q 010472 369 LPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQA 409 (509)
Q Consensus 369 LD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~ 409 (509)
||+..+ .+.++|++. +.+++...|..+...+|++...+
T Consensus 613 LD~~~~~~l~~~l~~~---~~tvI~isH~~~~~~~~d~il~l 651 (659)
T TIGR00954 613 VSVDVEGYMYRLCREF---GITLFSVSHRKSLWKYHEYLLYM 651 (659)
T ss_pred CCHHHHHHHHHHHHHc---CCEEEEEeCchHHHHhCCEEEEE
Confidence 999999 888888774 45567777787777777655433
No 357
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.64 E-value=9.4e-16 Score=169.89 Aligned_cols=188 Identities=14% Similarity=0.149 Sum_probs=134.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-----ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHh
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-----TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVAS 300 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-----~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~ 300 (509)
.+.+|++.||+||+|||||||||+|+|... .|.+.++|..+... ..+...+|+.|...++|.+++.+...+.+
T Consensus 52 ~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~--~~~~~s~yV~QdD~l~~~LTV~EtL~f~A 129 (613)
T KOG0061|consen 52 TAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSR--SFRKISGYVQQDDVLLPTLTVRETLRFSA 129 (613)
T ss_pred EEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchh--hhhheeEEEcccccccccccHHHHHHHHH
Confidence 357899999999999999999999999875 68889999554433 34567899999999999996655544444
Q ss_pred ccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCC-----CCCccccCCCchHHHHHHHHHHcCCce----eCCCCCH
Q 010472 301 GVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPK-----PKPYESQSRPPLALELLRAYCASRGYV----ASSGLPD 371 (509)
Q Consensus 301 g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~-----~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~ 371 (509)
-+...... ...+....+.+.+..++|.. ..+...+ .+|||+++| +.||.-|+.+|.+| ||+|||.
T Consensus 130 ~lrlp~~~-~~~~k~~~V~~vi~~LgL~~-~~~t~ig~~~~rgiSGGErkR----vsia~Ell~~P~iLflDEPTSGLDS 203 (613)
T KOG0061|consen 130 LLRLPSSL-SKEEKRERVEEVISELGLEK-CADTLIGNPGIRGLSGGERKR----VSIALELLTDPSILFLDEPTSGLDS 203 (613)
T ss_pred HhcCCCCC-CHHHHHHHHHHHHHHcCChh-hccceecCCCCCccccchhhH----HHHHHHHHcCCCEEEecCCCCCcch
Confidence 33322211 12234445555555556664 4555554 599999999 99999999999998 9999999
Q ss_pred HHH-HHHHHHHHhhc-CCccEEE-cCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 372 ETR-AARIILKDFID-GKLPHFE-MPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 372 ~~r-~~~~lLkd~~~-gkl~~~~-~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
... .+.++|+++++ |++++++ +-|...-=...|+ +.++..|+.+..++..
T Consensus 204 ~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~-l~lLs~G~~vy~G~~~ 256 (613)
T KOG0061|consen 204 FSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDK-LLLLSEGEVVYSGSPR 256 (613)
T ss_pred hhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhH-hhhhcCCcEEEecCHH
Confidence 999 99999999965 6666653 4444333333444 4455556777766654
No 358
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=3.6e-16 Score=143.95 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=97.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc-eeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ-TLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~-~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
.+.+|++++|+|+||+|||||+++|+|... .|.+.+.|...... .......++++++
T Consensus 21 ~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q-------------------- 80 (157)
T cd00267 21 TLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ-------------------- 80 (157)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee--------------------
Confidence 477899999999999999999999999976 67777777532110 0001112222222
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHH
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AAR 377 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~ 377 (509)
||+|++|| +.|+++++.+|+++ |++|||..++ .+.
T Consensus 81 ------------------------------------lS~G~~~r----~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~ 120 (157)
T cd00267 81 ------------------------------------LSGGQRQR----VALARALLLNPDLLLLDEPTSGLDPASRERLL 120 (157)
T ss_pred ------------------------------------CCHHHHHH----HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH
Confidence 99999999 99999999999998 9999999999 999
Q ss_pred HHHHHhhcCCccEEEcCCCCChhhccchhhHhhc
Q 010472 378 IILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASS 411 (509)
Q Consensus 378 ~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~ 411 (509)
.+|+++......++...|.+.....+++.+..+.
T Consensus 121 ~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~ 154 (157)
T cd00267 121 ELLRELAEEGRTVIIVTHDPELAELAADRVIVLK 154 (157)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 9999987655677888888888777655555443
No 359
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.63 E-value=5e-16 Score=146.88 Aligned_cols=194 Identities=13% Similarity=0.055 Sum_probs=136.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeec-CeEEEEeCC--CccCCCCcccHHHHHHh
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIIS-EKLVLCDCP--GLVFPSFSISRYDMVAS 300 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~-~~i~l~d~p--g~~~p~~~~~~~e~v~~ 300 (509)
++..|+++.|||.||||||||+|+|+|... +|.+.+.|..........+ ..+.-+.|. .-.+|.+ +..+|++.
T Consensus 28 ~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l--TieENl~l 105 (263)
T COG1101 28 EIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL--TIEENLAL 105 (263)
T ss_pred eecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc--cHHHHHHH
Confidence 467899999999999999999999999877 8999999977544322211 122223332 2235666 55565544
Q ss_pred ccCCcc----hhhhHHHHHHHHHHhCCc--cchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 301 GVLPID----RMTEHRQAVQVVANRVPR--HVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 301 g~~~~~----~~~~~~~~~~~i~~~l~~--~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
...... ...-.........+.+.. .+|+. .......-|||||+|- +.|+.|.++.|++| -|++||
T Consensus 106 a~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLen-rL~~~iglLSGGQRQa----lsL~MAtl~~pkiLLLDEHTAALD 180 (263)
T COG1101 106 AESRGKKRGLSSALNERRRSSFRERLARLGLGLEN-RLSDRIGLLSGGQRQA----LSLLMATLHPPKILLLDEHTAALD 180 (263)
T ss_pred HHhcCcccccchhhhHHHHHHHHHHHhhcccchhh-hhcChhhhccchHHHH----HHHHHHhcCCCcEEEecchhhcCC
Confidence 322210 000011122222333322 35666 3445567799999998 99999999999998 799999
Q ss_pred HHHH-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccC
Q 010472 371 DETR-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEV 426 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (509)
|... .++++=..+.+ .+++-+..+|+|.+|--+-.+..++..|+|+-+-.-+..++
T Consensus 181 Pkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g~~k~~ 238 (263)
T COG1101 181 PKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGEEKAS 238 (263)
T ss_pred cchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcccccccC
Confidence 9999 77777777754 79999999999999999999999999999987655555444
No 360
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.3e-16 Score=166.09 Aligned_cols=186 Identities=15% Similarity=0.067 Sum_probs=132.0
Q ss_pred ccCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 225 NVAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 225 ~~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
-.+..|+.++|+|++|||||||++.|+|... +|.+...|..... ....+++.+.++.|..-+| ..+..+|+..+
T Consensus 359 l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF---~~Tlr~NL~lA 435 (573)
T COG4987 359 LTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLF---SGTLRDNLRLA 435 (573)
T ss_pred eeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHH---HHHHHHHHhhc
Confidence 3578999999999999999999999999877 8999999976432 2223455677777766664 34666676655
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHh----------hccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCC
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVC----------KINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASS 367 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~----------~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----Pts 367 (509)
.-.. . .+.+..+.+ .++|.+.. ...-...||||++|| ++|||+|.++..++ ||.
T Consensus 436 ~~~A---s--DEel~~aL~---qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rR----LAlAR~LL~dapl~lLDEPTe 503 (573)
T COG4987 436 NPDA---S--DEELWAALQ---QVGLEKLLESAPDGLNTWLGEGGRRLSGGERRR----LALARALLHDAPLWLLDEPTE 503 (573)
T ss_pred CCCC---C--HHHHHHHHH---HcCHHHHHHhChhhhhchhccCCCcCCchHHHH----HHHHHHHHcCCCeEEecCCcc
Confidence 3211 1 122222333 33344421 122245799999999 99999999999987 999
Q ss_pred CCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccC
Q 010472 368 GLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEV 426 (509)
Q Consensus 368 GLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (509)
|||+.+. .+..+|.+-.+||+ ++..+|.....+.||++..+.+|..+.+++..+..++
T Consensus 504 gLD~~TE~~vL~ll~~~~~~kT-ll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~ 562 (573)
T COG4987 504 GLDPITERQVLALLFEHAEGKT-LLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLAN 562 (573)
T ss_pred cCChhhHHHHHHHHHHHhcCCe-EEEEecccccHhhcCEEEEEECCeeeecCCHHhhhcc
Confidence 9999998 99999988888775 4556788899999887766655555555555566553
No 361
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.62 E-value=2.5e-16 Score=188.98 Aligned_cols=182 Identities=13% Similarity=0.104 Sum_probs=128.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--------------------------------------------------
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-------------------------------------------------- 255 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-------------------------------------------------- 255 (509)
++++|+++||||++|||||||+++|+|++.
T Consensus 1190 ~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1269 (1466)
T PTZ00265 1190 SCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGED 1269 (1466)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 678999999999999999999999999876
Q ss_pred ------ceEEeeCCcccc-cceeeecCeEEEEeCCCccCCCCcccHHHHHHhccCCcchhhhHHHHHHHHHHhCCcc---
Q 010472 256 ------TGVTSTPGKTKH-FQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVLPIDRMTEHRQAVQVVANRVPRH--- 325 (509)
Q Consensus 256 ------~g~~~~~G~t~~-~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~--- 325 (509)
.|.+.++|.... .....++..++|+.|...+|+ .+..+|+..|.-.. . .+.+..+++.....
T Consensus 1270 ~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~---gTIreNI~~g~~~a---t--~eeI~~A~k~A~l~~fI 1341 (1466)
T PTZ00265 1270 STVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN---MSIYENIKFGKEDA---T--REDVKRACKFAAIDEFI 1341 (1466)
T ss_pred cccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc---ccHHHHHhcCCCCC---C--HHHHHHHHHHcCCHHHH
Confidence 477888887642 233345778999999998864 48899998884211 1 12233333332211
Q ss_pred -----chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHHHHHHhh-cCCccEEEcC
Q 010472 326 -----VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARIILKDFI-DGKLPHFEMP 394 (509)
Q Consensus 326 -----~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~lLkd~~-~gkl~~~~~p 394 (509)
++.. ........|||||+|| ++|||||+++|++| ||++||..+. .+...|..+. ....+.+...
T Consensus 1342 ~~LP~GydT-~VGe~G~~LSGGQkQR----IaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIa 1416 (1466)
T PTZ00265 1342 ESLPNKYDT-NVGPYGKSLSGGQKQR----IAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIA 1416 (1466)
T ss_pred HhCccccCC-ccCCCCCcCCHHHHHH----HHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence 2221 1112244699999999 99999999999998 9999999998 8888898885 2334566677
Q ss_pred CCCChhhccchhhHhhcc---cccc-cCCC
Q 010472 395 PGMSHEEVGMEDTQASSL---LELH-ESDA 420 (509)
Q Consensus 395 p~~~~~~~~~~~~~~~~~---~~~~-~~~~ 420 (509)
|.++.-+.||+...+..+ |+++ +.++
T Consensus 1417 HRlsti~~aD~Ivvl~~~~~~G~iv~e~Gt 1446 (1466)
T PTZ00265 1417 HRIASIKRSDKIVVFNNPDRTGSFVQAHGT 1446 (1466)
T ss_pred chHHHHHhCCEEEEEeCCCCCCCEEEEecC
Confidence 777777776666555442 6644 4443
No 362
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.61 E-value=1.1e-15 Score=170.68 Aligned_cols=171 Identities=17% Similarity=0.063 Sum_probs=111.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc-
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV- 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~- 302 (509)
.+.+|+++||||+|||||||||++|+|... .|.+.+.|... +.++.+...... ..+..+.+..+.
T Consensus 25 ~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~----------~~~l~q~~~~~~--~~~v~~~~~~~~~ 92 (635)
T PRK11147 25 HIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLI----------VARLQQDPPRNV--EGTVYDFVAEGIE 92 (635)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCE----------EEEeccCCCCCC--CCCHHHHHHHhhH
Confidence 477899999999999999999999999976 78888776321 122222110000 001111100000
Q ss_pred ----------------C--Cc-c------hhh------hHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHH
Q 010472 303 ----------------L--PI-D------RMT------EHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLAL 351 (509)
Q Consensus 303 ----------------~--~~-~------~~~------~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~ 351 (509)
. .. . ... ........+.+.+..++|. ..+.+..||||++|| +
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~---~~~~~~~LSgGekqR----v 165 (635)
T PRK11147 93 EQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD---PDAALSSLSGGWLRK----A 165 (635)
T ss_pred HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC---CCCchhhcCHHHHHH----H
Confidence 0 00 0 000 0000112233334444443 245678899999999 9
Q ss_pred HHHHHHHHcCCce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccC
Q 010472 352 ELLRAYCASRGYV----ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHES 418 (509)
Q Consensus 352 ~La~ALa~~p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~ 418 (509)
+||+||+.+|.+| ||++||+.++ .+..+|+.+. + +++...|+......+++.+..++.|+++.+
T Consensus 166 ~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~-~--tvlivsHd~~~l~~~~d~i~~L~~G~i~~~ 234 (635)
T PRK11147 166 ALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ-G--SIIFISHDRSFIRNMATRIVDLDRGKLVSY 234 (635)
T ss_pred HHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC-C--EEEEEeCCHHHHHHhcCeEEEEECCEEEEe
Confidence 9999999999998 9999999999 9999999883 3 566777888887777778888888888643
No 363
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.61 E-value=4.7e-16 Score=171.22 Aligned_cols=174 Identities=13% Similarity=-0.002 Sum_probs=116.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
.+++|++++|+|+||+|||||+++|+|... .|.+.+.|..... ....++..++++.|...+|... ..++.
T Consensus 364 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~t---i~~n~---- 436 (555)
T TIGR01194 364 RIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDL---IGPDE---- 436 (555)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhh---hhccc----
Confidence 578999999999999999999999999887 8999999976432 2223456688888877776542 22221
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchhhHh-----hccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHH
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIENVC-----KINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDET 373 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~-----~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~ 373 (509)
.+. ...+.+..+++.++ +.+.. .......|||||+|| ++||||++.+|+++ ||++||+.+
T Consensus 437 ~~~----~~~~~~~~~~~~~~---l~~~~~~lp~g~~t~~~LSgGq~qR----lalaRall~~~~ililDE~ts~LD~~~ 505 (555)
T TIGR01194 437 GEH----ASLDNAQQYLQRLE---IADKVKIEDGGFSTTTALSTGQQKR----LALICAWLEDRPILLFDEWAADQDPAF 505 (555)
T ss_pred ccc----hhHHHHHHHHHHcC---CchhhcccccccCCcccCCHHHHHH----HHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence 111 01122233334333 33211 111235799999999 99999999999998 999999999
Q ss_pred H-HHHH-HHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccC
Q 010472 374 R-AARI-ILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHES 418 (509)
Q Consensus 374 r-~~~~-lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~ 418 (509)
+ .+.+ +++.+...+.+++...|..+..+ .++.+.+++.|++++.
T Consensus 506 ~~~i~~~l~~~~~~~~~tiiiisH~~~~~~-~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 506 KRFFYEELLPDLKRQGKTIIIISHDDQYFE-LADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEe
Confidence 9 7765 44555433334444456655554 4666667777887654
No 364
>PLN03232 ABC transporter C family member; Provisional
Probab=99.61 E-value=4.9e-16 Score=187.66 Aligned_cols=181 Identities=13% Similarity=0.053 Sum_probs=131.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++++|+.+||||++|||||||+++|+|+.. .|.+.++|..... ....++..+++++|...+|+. +..+|+..+-
T Consensus 1258 ~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g---TIr~NL~~~~ 1334 (1495)
T PLN03232 1258 FVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG---TVRFNIDPFS 1334 (1495)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc---cHHHHcCCCC
Confidence 578999999999999999999999999987 7999999977432 333457789999999988754 6777775431
Q ss_pred CCcchhhhHHHHHHHHHHhCCcc--------chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRH--------VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~--------~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
...+ +.+..+++..... ++.. ........|||||+|| ++|||||+++|++| ||+++|
T Consensus 1335 ----~~sd--eei~~al~~a~l~~~I~~lp~GLdt-~v~e~G~~LSgGQrQr----laLARALLr~~~ILILDEATSaLD 1403 (1495)
T PLN03232 1335 ----EHND--ADLWEALERAHIKDVIDRNPFGLDA-EVSEGGENFSVGQRQL----LSLARALLRRSKILVLDEATASVD 1403 (1495)
T ss_pred ----CCCH--HHHHHHHHHcCCHHHHHhCcCCCCc-eecCCCCCCCHHHHHH----HHHHHHHHhCCCEEEEECCcccCC
Confidence 1111 2222233322211 2221 1112234699999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
..+. .+.+.|+...+++ ++++..|.++.... +|.+.+++.|++++.++.+
T Consensus 1404 ~~Te~~Iq~~L~~~~~~~-TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~Gt~~ 1454 (1495)
T PLN03232 1404 VRTDSLIQRTIREEFKSC-TMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQ 1454 (1495)
T ss_pred HHHHHHHHHHHHHHcCCC-EEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHH
Confidence 9998 8889998876654 46677788777666 4666677888888866554
No 365
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.61 E-value=1.9e-16 Score=147.57 Aligned_cols=196 Identities=11% Similarity=0.040 Sum_probs=139.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcc-ccc-c-eeeecCeEEEEeCCCccCCCCcccHHHHHHh
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKT-KHF-Q-TLIISEKLVLCDCPGLVFPSFSISRYDMVAS 300 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t-~~~-~-~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~ 300 (509)
++.+|+.-+||||||+||||++..|+|..+ .|.+.+.|.+ ... . ....+..|+--+|...+|.+++..++..+..
T Consensus 27 ~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~ 106 (249)
T COG4674 27 SVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELAL 106 (249)
T ss_pred EecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHh
Confidence 578999999999999999999999999987 6889998833 211 1 1223446777778778888885444333333
Q ss_pred ccCCc----chhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHH
Q 010472 301 GVLPI----DRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDE 372 (509)
Q Consensus 301 g~~~~----~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~ 372 (509)
+..+. -..+-..+....+.+.+...+|.+ ........||.||+|+ ++|...++++|.+| |.+|+.+.
T Consensus 107 ~~~k~v~a~L~~r~~~~e~~ride~La~igL~~-~~~~~A~~LSHGqKQw----LEIGMll~Q~P~lLLlDEPvAGMTd~ 181 (249)
T COG4674 107 NRDKSVFASLFARLRAEERRRIDELLATIGLGD-ERDRLAALLSHGQKQW----LEIGMLLAQDPKLLLLDEPVAGMTDA 181 (249)
T ss_pred cCCcchHHHhhhhcChhHHHHHHHHHHHcccch-hhhhhhhhhccchhhh----hhhheeeccCCcEEEecCccCCCcHH
Confidence 22110 001111223344555555556766 5566678899999999 99999999999998 99999888
Q ss_pred HH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCc
Q 010472 373 TR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVP 427 (509)
Q Consensus 373 ~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (509)
.. ..-++|+.++.. -.++..-|+|...+..++.+-++..|.+...++-|....+
T Consensus 182 Et~~taeLl~~la~~-hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~d 236 (249)
T COG4674 182 ETEKTAELLKSLAGK-HSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQND 236 (249)
T ss_pred HHHHHHHHHHHHhcC-ceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcC
Confidence 88 888999998654 4567778999998888877777777777665555554443
No 366
>PLN03130 ABC transporter C family member; Provisional
Probab=99.61 E-value=8.1e-16 Score=186.30 Aligned_cols=182 Identities=13% Similarity=0.051 Sum_probs=133.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++++|+.+||||++|||||||+++|+|++. .|.+.++|..... ....++..+++++|...+|.. +..+|+..+-
T Consensus 1261 ~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G---TIreNLd~~~ 1337 (1622)
T PLN03130 1261 EISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG---TVRFNLDPFN 1337 (1622)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccc---cHHHHhCcCC
Confidence 678999999999999999999999999987 7999999987432 333457789999999988753 6777775432
Q ss_pred CCcchhhhHHHHHHHHHHhCCc--------cchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPR--------HVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~--------~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
...+ +.+..+++.... .++.. ........||+||+|| ++|||||+++|++| ||+++|
T Consensus 1338 ----~~td--eei~~Al~~a~l~~~I~~lp~GLdt-~Vge~G~nLSgGQrQr----laLARALLr~p~ILILDEATSaLD 1406 (1622)
T PLN03130 1338 ----EHND--ADLWESLERAHLKDVIRRNSLGLDA-EVSEAGENFSVGQRQL----LSLARALLRRSKILVLDEATAAVD 1406 (1622)
T ss_pred ----CCCH--HHHHHHHHHcCcHHHHHhCccccCc-cccCCCCCCCHHHHHH----HHHHHHHHcCCCEEEEECCCCCCC
Confidence 1111 222223332221 12222 1112234799999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
..+. .+.+.|+...+++ ++++..|..+.-..| |.+.+++.|++++.++.+.
T Consensus 1407 ~~Te~~Iq~~I~~~~~~~-TvI~IAHRL~tI~~~-DrIlVLd~G~IvE~Gt~~e 1458 (1622)
T PLN03130 1407 VRTDALIQKTIREEFKSC-TMLIIAHRLNTIIDC-DRILVLDAGRVVEFDTPEN 1458 (1622)
T ss_pred HHHHHHHHHHHHHHCCCC-EEEEEeCChHHHHhC-CEEEEEECCEEEEeCCHHH
Confidence 9998 8899998876654 566777887777665 6667788889988666543
No 367
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.60 E-value=1.4e-15 Score=148.70 Aligned_cols=93 Identities=10% Similarity=-0.078 Sum_probs=73.1
Q ss_pred hCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcC--Cce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEc
Q 010472 321 RVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASR--GYV----ASSGLPDETR-AARIILKDFIDGKLPHFEM 393 (509)
Q Consensus 321 ~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p--~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~ 393 (509)
.+..+++...+....+..||+||+|| +.||+||+.+| .++ |++|||+..+ .+..+|+++.+.+.+++..
T Consensus 120 ~l~~~~l~~~~~~~~~~~LSgG~~qr----v~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~i 195 (226)
T cd03270 120 FLVDVGLGYLTLSRSAPTLSGGEAQR----IRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVV 195 (226)
T ss_pred HHHHCCCCcccccCccCcCCHHHHHH----HHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 34445565434566788999999999 99999999998 476 9999999999 9999999987655567777
Q ss_pred CCCCChhhccchhhHhh------cccccccC
Q 010472 394 PPGMSHEEVGMEDTQAS------SLLELHES 418 (509)
Q Consensus 394 pp~~~~~~~~~~~~~~~------~~~~~~~~ 418 (509)
+|++...+ +++.+.++ ++|+|++.
T Consensus 196 tH~~~~~~-~~d~i~~l~~~~~~~~G~iv~~ 225 (226)
T cd03270 196 EHDEDTIR-AADHVIDIGPGAGVHGGEIVAQ 225 (226)
T ss_pred EeCHHHHH-hCCEEEEeCCCccccCCEEEec
Confidence 88887776 56666777 77777764
No 368
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.60 E-value=1.2e-15 Score=183.38 Aligned_cols=176 Identities=14% Similarity=0.111 Sum_probs=123.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeC-Ccccc-cceeeecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTP-GKTKH-FQTLIISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~-G~t~~-~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
.+++|+++||+|+||||||||+++|+|++. .|.+.+. |.... .....++..++++.|...+|+ .+..+++..|
T Consensus 407 ~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~---~TI~eNI~~g 483 (1466)
T PTZ00265 407 TLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFS---NSIKNNIKYS 483 (1466)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchh---ccHHHHHHhc
Confidence 578999999999999999999999999987 7999994 55432 122234567999999888875 3778888876
Q ss_pred cCCcch-----------------------------------------h-----------hhHHHHHHHHHHhCCccchhh
Q 010472 302 VLPIDR-----------------------------------------M-----------TEHRQAVQVVANRVPRHVIEN 329 (509)
Q Consensus 302 ~~~~~~-----------------------------------------~-----------~~~~~~~~~i~~~l~~~~L~~ 329 (509)
...... . ....+.+..+++.+ ++.+
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~---~l~~ 560 (1466)
T PTZ00265 484 LYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKV---LIHD 560 (1466)
T ss_pred CCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHh---CcHH
Confidence 421000 0 00011222222222 2322
Q ss_pred H-------h---hccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHHHHHHhhc-CCccEEEc
Q 010472 330 V-------C---KINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARIILKDFID-GKLPHFEM 393 (509)
Q Consensus 330 ~-------~---~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~lLkd~~~-gkl~~~~~ 393 (509)
. | ....+..|||||+|| ++|||||+.+|++| ||++||+.+. .+...|+.+.. .+.+++..
T Consensus 561 ~i~~lp~g~dT~vg~~g~~LSGGQkQR----iaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiI 636 (1466)
T PTZ00265 561 FVSALPDKYETLVGSNASKLSGGQKQR----ISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIII 636 (1466)
T ss_pred HHHhCccccCceeCCCCCcCCHHHHHH----HHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEE
Confidence 1 1 123356799999999 99999999999998 9999999999 99999999874 34556667
Q ss_pred CCCCChhhccchhhHhhc
Q 010472 394 PPGMSHEEVGMEDTQASS 411 (509)
Q Consensus 394 pp~~~~~~~~~~~~~~~~ 411 (509)
.|.++..+.||+...+..
T Consensus 637 sHrls~i~~aD~Iivl~~ 654 (1466)
T PTZ00265 637 AHRLSTIRYANTIFVLSN 654 (1466)
T ss_pred eCCHHHHHhCCEEEEEeC
Confidence 788887776555444433
No 369
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.60 E-value=1.2e-15 Score=184.12 Aligned_cols=181 Identities=13% Similarity=0.070 Sum_probs=131.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
.+++|+.+||||++|||||||+++|+|+.. .|.+.++|..... ....++..+.+++|...+|+. +..+|+-.
T Consensus 1241 ~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G---TIR~NLdp--- 1314 (1490)
T TIGR01271 1241 SVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG---TFRKNLDP--- 1314 (1490)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc---CHHHHhCc---
Confidence 678999999999999999999999999987 8999999987543 223457789999999999764 66677632
Q ss_pred CcchhhhHHHHHHHHHHhCCcc--------chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRH--------VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPD 371 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~--------~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~ 371 (509)
..... .+.+..+++.+... +|.... ......||+||+|| ++|||||++++++| ||+++|.
T Consensus 1315 -~~~~t--deei~~aL~~~~L~~~i~~lp~GLdt~v-~e~G~nLSgGQrQr----L~LARALLr~~~ILlLDEaTS~lD~ 1386 (1490)
T TIGR01271 1315 -YEQWS--DEEIWKVAEEVGLKSVIEQFPDKLDFVL-VDGGYVLSNGHKQL----MCLARSILSKAKILLLDEPSAHLDP 1386 (1490)
T ss_pred -ccCCC--HHHHHHHHHHCCCHHHHHhCcccccccc-ccCCCcCCHHHHHH----HHHHHHHhCCCCEEEEeCCcccCCH
Confidence 11111 12223333333211 121101 11223699999999 99999999999998 9999999
Q ss_pred HHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 372 ETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 372 ~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
.+. .+...|+....+ .++++..|.++.... +|.+.+++.|++++.+..+
T Consensus 1387 ~Te~~I~~~L~~~~~~-~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~g~p~ 1436 (1490)
T TIGR01271 1387 VTLQIIRKTLKQSFSN-CTVILSEHRVEALLE-CQQFLVIEGSSVKQYDSIQ 1436 (1490)
T ss_pred HHHHHHHHHHHHHcCC-CEEEEEecCHHHHHh-CCEEEEEECCEEEEeCCHH
Confidence 998 889999887666 455677788776666 4566778888998866553
No 370
>PLN03140 ABC transporter G family member; Provisional
Probab=99.60 E-value=2.2e-15 Score=180.43 Aligned_cols=188 Identities=10% Similarity=0.051 Sum_probs=128.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-----ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHh
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-----TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVAS 300 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-----~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~ 300 (509)
.+++|++++|+|+|||||||||++|+|... .|.+.++|...... ..+..++|+.|...++|.++ +.+++..
T Consensus 187 ~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~--~~~~~i~yv~Q~d~~~~~lT--V~EtL~f 262 (1470)
T PLN03140 187 IIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEF--VPRKTSAYISQNDVHVGVMT--VKETLDF 262 (1470)
T ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhh--cccceeEEecccccCCCcCc--HHHHHHH
Confidence 578999999999999999999999999864 58899998764321 12456899999888888884 4554433
Q ss_pred c--cCCcc-------hh-hhHH-------HHH---------------HHHHHhCCccchhhH----hhccCCCCCCcccc
Q 010472 301 G--VLPID-------RM-TEHR-------QAV---------------QVVANRVPRHVIENV----CKINLPKPKPYESQ 344 (509)
Q Consensus 301 g--~~~~~-------~~-~~~~-------~~~---------------~~i~~~l~~~~L~~~----~~~~~~~~LSgGq~ 344 (509)
+ +.... .. +... ..+ ..+...+..++|.+. ..+..+..+||||+
T Consensus 263 ~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGer 342 (1470)
T PLN03140 263 SARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQK 342 (1470)
T ss_pred HHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccc
Confidence 2 11100 00 0000 000 012223334455431 12445678999999
Q ss_pred CCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHHHHHHhhc--CCccEEEcCCCC-ChhhccchhhHhhcccccc
Q 010472 345 SRPPLALELLRAYCASRGYV----ASSGLPDETR-AARIILKDFID--GKLPHFEMPPGM-SHEEVGMEDTQASSLLELH 416 (509)
Q Consensus 345 QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~lLkd~~~--gkl~~~~~pp~~-~~~~~~~~~~~~~~~~~~~ 416 (509)
|| +.||++|+.+|.++ ||+|||..++ .+.++|+.+.+ |+++++ ..|.. .+.....+.+.++..|+++
T Consensus 343 kR----Vsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tvii-s~Hqp~~~i~~lfD~vilL~~G~iv 417 (1470)
T PLN03140 343 KR----VTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLM-SLLQPAPETFDLFDDIILLSEGQIV 417 (1470)
T ss_pred ee----eeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEE-EecCCCHHHHHHhheEEEeeCceEE
Confidence 99 99999999999998 9999999999 99999999964 444444 34443 3444456677777888888
Q ss_pred cCCCCc
Q 010472 417 ESDASD 422 (509)
Q Consensus 417 ~~~~~~ 422 (509)
..++.+
T Consensus 418 y~G~~~ 423 (1470)
T PLN03140 418 YQGPRD 423 (1470)
T ss_pred EeCCHH
Confidence 776654
No 371
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.60 E-value=1e-15 Score=185.12 Aligned_cols=181 Identities=13% Similarity=0.044 Sum_probs=131.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++++|+++||||++|||||||+++|.|++. .|.+.++|..... ....++..+++++|...+|+. +..+|+..
T Consensus 1308 ~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g---TIr~NLdp-- 1382 (1522)
T TIGR00957 1308 TIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG---SLRMNLDP-- 1382 (1522)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCc---cHHHHcCc--
Confidence 578999999999999999999999999987 7999999987533 333467789999999999764 66666641
Q ss_pred CCcchhhhHHHHHHHHHHhCCc--------cchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPR--------HVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~--------~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
.....+ +.+..+++.... .++.. ........|||||+|| ++|||||+++|++| ||+++|
T Consensus 1383 --~~~~sd--eei~~al~~a~l~~~I~~lp~GLdt-~v~e~G~~LSgGQrQr----l~LARALLr~~~ILiLDEaTSalD 1453 (1522)
T TIGR00957 1383 --FSQYSD--EEVWWALELAHLKTFVSALPDKLDH-ECAEGGENLSVGQRQL----VCLARALLRKTKILVLDEATAAVD 1453 (1522)
T ss_pred --ccCCCH--HHHHHHHHHcCcHHHHhhCccCCCc-eecCCCCcCCHHHHHH----HHHHHHHHcCCCEEEEECCcccCC
Confidence 111111 222223333221 12221 1112234699999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
..+. .+.+.|+...+++ ++++..|..+.-..| |.+++++.|++++.++.+
T Consensus 1454 ~~Te~~Iq~~l~~~~~~~-TvI~IAHRl~ti~~~-DrIlVld~G~IvE~G~~~ 1504 (1522)
T TIGR00957 1454 LETDNLIQSTIRTQFEDC-TVLTIAHRLNTIMDY-TRVIVLDKGEVAEFGAPS 1504 (1522)
T ss_pred HHHHHHHHHHHHHHcCCC-EEEEEecCHHHHHhC-CEEEEEECCEEEEECCHH
Confidence 9998 8889998876664 456677777666655 666777888988866553
No 372
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.59 E-value=1.7e-15 Score=172.97 Aligned_cols=182 Identities=16% Similarity=0.135 Sum_probs=135.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccc-cceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKH-FQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~-~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
+++.|+.+|||||+||||||++.+|-..+. .|.+.++|.... .....++.+++++.|.+.+|. .+..+|++.|.
T Consensus 1012 ~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~---~TIrENI~YG~ 1088 (1228)
T KOG0055|consen 1012 SIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN---GTIRENIAYGS 1088 (1228)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhc---ccHHHHHhccC
Confidence 678999999999999999999999999986 899999998743 344457889999999998854 48899999993
Q ss_pred CCcchhhhHHHHHHHHHHhCCcc--------chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRH--------VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~--------~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
... ...+ +..+++..+.+ +++. .-......|||||+|| ++||||++++|++| .|++||
T Consensus 1089 ~~v-s~~e----Ii~Aak~ANaH~FI~sLP~GyDT-~vGerG~QLSGGQKQR----IAIARAilRnPkILLLDEATSALD 1158 (1228)
T KOG0055|consen 1089 EEV-SEEE----IIEAAKLANAHNFISSLPQGYDT-RVGERGVQLSGGQKQR----IAIARAILRNPKILLLDEATSALD 1158 (1228)
T ss_pred CCC-CHHH----HHHHHHHhhhHHHHhcCcCcccC-ccCcccCcCCchHHHH----HHHHHHHHcCCCeeeeeccchhhh
Confidence 221 1111 11222222211 2222 1122345799999999 99999999999998 899999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
.++. .+.+.|.....|+++++ ..|-++.-.. +|.++++..|+++|.+.-+
T Consensus 1159 seSErvVQeALd~a~~gRT~Iv-IAHRLSTIqn-aD~I~Vi~~G~VvE~GtH~ 1209 (1228)
T KOG0055|consen 1159 SESERVVQEALDRAMEGRTTIV-IAHRLSTIQN-ADVIAVLKNGKVVEQGTHD 1209 (1228)
T ss_pred hhhHHHHHHHHHHhhcCCcEEE-Eecchhhhhc-CCEEEEEECCEEEecccHH
Confidence 9998 99999999999976554 3344444444 5567778889999877654
No 373
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.58 E-value=4.3e-15 Score=179.38 Aligned_cols=172 Identities=13% Similarity=0.097 Sum_probs=119.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
.+++|++++|+|+|||||||||++|+|... .|.+.+.| .++|+.|...+|+ .+..+++++|..
T Consensus 448 ~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g------------~iayv~Q~~~l~~---~Ti~eNI~~g~~ 512 (1490)
T TIGR01271 448 KLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------RISFSPQTSWIMP---GTIKDNIIFGLS 512 (1490)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC------------EEEEEeCCCccCC---ccHHHHHHhccc
Confidence 578999999999999999999999999986 78877766 4889998877765 378889987742
Q ss_pred CcchhhhHHHHHH--HHHHhCCccchhh-HhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-H
Q 010472 304 PIDRMTEHRQAVQ--VVANRVPRHVIEN-VCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-A 375 (509)
Q Consensus 304 ~~~~~~~~~~~~~--~i~~~l~~~~L~~-~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~ 375 (509)
.+.. ....... .+.+.+..+.... .........|||||+|| ++||||++.+|+++ |++|||...+ .
T Consensus 513 -~~~~-~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqR----i~lARAl~~~~~illLDep~saLD~~~~~~ 586 (1490)
T TIGR01271 513 -YDEY-RYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRAR----ISLARAVYKDADLYLLDSPFTHLDVVTEKE 586 (1490)
T ss_pred -cchH-HHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHH----HHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 2110 1111111 1111111110000 01122356899999999 99999999999998 9999999999 7
Q ss_pred HHH-HHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCC
Q 010472 376 ARI-ILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDA 420 (509)
Q Consensus 376 ~~~-lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (509)
+.+ +|..+.+|++ ++..+|.+..... ++.+.+++.|.+++.++
T Consensus 587 i~~~~l~~~~~~~t-vilvtH~~~~~~~-ad~ii~l~~g~i~~~g~ 630 (1490)
T TIGR01271 587 IFESCLCKLMSNKT-RILVTSKLEHLKK-ADKILLLHEGVCYFYGT 630 (1490)
T ss_pred HHHHHHHHHhcCCe-EEEEeCChHHHHh-CCEEEEEECCEEEEEcC
Confidence 775 5677766654 4445577777776 56667777787766544
No 374
>PTZ00243 ABC transporter; Provisional
Probab=99.58 E-value=2.9e-15 Score=181.15 Aligned_cols=183 Identities=10% Similarity=0.066 Sum_probs=131.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
.+++|+.+||||++|||||||+++|+|++. .|.+.++|..... ....++..+++++|...+|.. +..+|+..+
T Consensus 1332 ~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g---TIreNIdp~- 1407 (1560)
T PTZ00243 1332 RIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDG---TVRQNVDPF- 1407 (1560)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccc---cHHHHhCcc-
Confidence 578999999999999999999999999987 7999999987532 233467789999999998753 677777421
Q ss_pred CCcchhhhHHHHHHHHHHhCCcc--------chhhHhhccCCCCCCccccCCCchHHHHHHHHHHc-CCce----eCCCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRH--------VIENVCKINLPKPKPYESQSRPPLALELLRAYCAS-RGYV----ASSGL 369 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~--------~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~-p~lL----PtsGL 369 (509)
....+ +.+..+++..... ++.... ......|||||+|| ++|||||+++ +++| ||+++
T Consensus 1408 ---~~~sd--eeI~~Al~~a~l~~~I~~lp~Gldt~v-ge~G~nLSgGQrQr----LaLARALL~~~~~ILlLDEATSaL 1477 (1560)
T PTZ00243 1408 ---LEASS--AEVWAALELVGLRERVASESEGIDSRV-LEGGSNYSVGQRQL----MCMARALLKKGSGFILMDEATANI 1477 (1560)
T ss_pred ---cCCCH--HHHHHHHHHCCChHHHhhCcccccccc-cCCcCcCCHHHHHH----HHHHHHHhcCCCCEEEEeCCCccC
Confidence 11111 2233333333221 111101 11234699999999 9999999996 7887 99999
Q ss_pred CHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 370 PDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 370 D~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
|..+. .+...|+...+++ ++++..|....-..| |.+.+++.|++++.++.+..
T Consensus 1478 D~~te~~Iq~~L~~~~~~~-TvI~IAHRl~ti~~~-DrIlVLd~G~VvE~Gt~~eL 1531 (1560)
T PTZ00243 1478 DPALDRQIQATVMSAFSAY-TVITIAHRLHTVAQY-DKIIVMDHGAVAEMGSPREL 1531 (1560)
T ss_pred CHHHHHHHHHHHHHHCCCC-EEEEEeccHHHHHhC-CEEEEEECCEEEEECCHHHH
Confidence 99998 8899998876664 455677777666655 56677788888886655443
No 375
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.57 E-value=3.4e-15 Score=156.20 Aligned_cols=187 Identities=13% Similarity=0.034 Sum_probs=132.4
Q ss_pred ccCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccc-ccceeeecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 225 NVAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTK-HFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 225 ~~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~-~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
..+.+|+.+|||||+|||||||.++|.|.-. .|.+.++|-+. +.....+.+.++|++|.--+|+. +..+|++.-
T Consensus 357 F~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G---TIaeNIaRf 433 (580)
T COG4618 357 FALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG---TIAENIARF 433 (580)
T ss_pred eEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCC---cHHHHHHhc
Confidence 4678999999999999999999999999877 89999999774 33444567789999998777654 778887653
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccch----hhHhhcc---CCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVI----ENVCKIN---LPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L----~~~~~~~---~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
--.. +.. .+-..+..-+-++| .+-|... -...|||||+|| +.|||||-.+|.++ |-++||
T Consensus 434 ~~~~----d~~-kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQR----IaLARAlYG~P~lvVLDEPNsNLD 504 (580)
T COG4618 434 GEEA----DPE-KVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQR----IALARALYGDPFLVVLDEPNSNLD 504 (580)
T ss_pred cccC----CHH-HHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHH----HHHHHHHcCCCcEEEecCCCCCcc
Confidence 2111 111 11111111111111 1112211 234699999999 99999999999987 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
.... ++..-|...+..+.+.+..+|-- ..--|.|.++++++|.+..+++.+..
T Consensus 505 ~~GE~AL~~Ai~~~k~rG~~vvviaHRP-s~L~~~Dkilvl~~G~~~~FG~r~eV 558 (580)
T COG4618 505 SEGEAALAAAILAAKARGGTVVVIAHRP-SALASVDKILVLQDGRIAAFGPREEV 558 (580)
T ss_pred hhHHHHHHHHHHHHHHcCCEEEEEecCH-HHHhhcceeeeecCChHHhcCCHHHH
Confidence 9988 88999998876444444444432 24457889999999999998887544
No 376
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.56 E-value=7.2e-15 Score=159.31 Aligned_cols=173 Identities=13% Similarity=0.061 Sum_probs=117.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
.+.+|+++||||+||+||||||++|+|... .|.+..++. ..++++.|.....+.. ++.+.++.+..
T Consensus 25 ~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~----------~~v~~l~Q~~~~~~~~--tv~~~v~~~~~ 92 (530)
T COG0488 25 TLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG----------LRVGYLSQEPPLDPEK--TVLDYVIEGFG 92 (530)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC----------ceEEEeCCCCCcCCCc--cHHHHHHhhhH
Confidence 577899999999999999999999999986 676666542 1467787766655544 45555555543
Q ss_pred CcchhhhHHH----------------------------HHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHH
Q 010472 304 PIDRMTEHRQ----------------------------AVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLR 355 (509)
Q Consensus 304 ~~~~~~~~~~----------------------------~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ 355 (509)
.......... ....+...+..+++.. . .+....||||++.| ++||+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~-~-~~~~~~LSGG~r~R----v~LA~ 166 (530)
T COG0488 93 ELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPD-E-DRPVSSLSGGWRRR----VALAR 166 (530)
T ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCc-c-cCchhhcCHHHHHH----HHHHH
Confidence 3221110000 0112223333334433 2 46678899999999 99999
Q ss_pred HHHHcCCce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCC
Q 010472 356 AYCASRGYV----ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESD 419 (509)
Q Consensus 356 ALa~~p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~ 419 (509)
||..+|.+| ||+.||..+. -+..+|+.+.. +++...|+-.-=..+|..+..++.|.+..+.
T Consensus 167 aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g---tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~ 232 (530)
T COG0488 167 ALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG---TVIVVSHDRYFLDNVATHILELDRGKLTPYK 232 (530)
T ss_pred HHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC---cEEEEeCCHHHHHHHhhheEEecCCceeEec
Confidence 999999998 9999999988 78888887654 4444555544445566666667777665543
No 377
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.56 E-value=6.7e-15 Score=142.27 Aligned_cols=179 Identities=12% Similarity=0.053 Sum_probs=130.2
Q ss_pred ccCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHh-c
Q 010472 225 NVAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVAS-G 301 (509)
Q Consensus 225 ~~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~-g 301 (509)
-++.+|+.+||||+||||||||+++|+|.++ .|.+.+.|.... +++-..-+-|.+ +..+|+.. +
T Consensus 48 f~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~-----------li~lg~Gf~pel--TGreNi~l~~ 114 (249)
T COG1134 48 FEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAP-----------LIELGAGFDPEL--TGRENIYLRG 114 (249)
T ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEeh-----------hhhcccCCCccc--chHHHHHHHH
Confidence 3578999999999999999999999999987 788888775321 111112234666 44555432 3
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
++......+..+..+.+.+ .-+|.+ |.+.+...+|-||+-| ++++.|...+|++| -.+--|..-+ .+
T Consensus 115 ~~~G~~~~ei~~~~~eIie---FaELG~-fi~~PvktYSSGM~aR----LaFsia~~~~pdILllDEvlavGD~~F~~K~ 186 (249)
T COG1134 115 LILGLTRKEIDEKVDEIIE---FAELGD-FIDQPVKTYSSGMYAR----LAFSVATHVEPDILLLDEVLAVGDAAFQEKC 186 (249)
T ss_pred HHhCccHHHHHHHHHHHHH---HHHHHH-HhhCchhhccHHHHHH----HHHhhhhhcCCCEEEEehhhhcCCHHHHHHH
Confidence 2221111122233333333 334666 8888899999999999 99999999999998 4455577666 88
Q ss_pred HHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 377 RIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 377 ~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
...|+++.+....++...|++......|+.++.++.|.+...++.+..
T Consensus 187 ~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~v 234 (249)
T COG1134 187 LERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEV 234 (249)
T ss_pred HHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHH
Confidence 999999966558888899999999999999999999999887776544
No 378
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.56 E-value=3.2e-15 Score=133.91 Aligned_cols=124 Identities=18% Similarity=0.171 Sum_probs=89.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
.+.+|++++|+|+||+|||||+++|+|... .|.+.+.|..... .....+..+.++.+...+++.++ ..++
T Consensus 7 ~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t--v~~~----- 79 (137)
T PF00005_consen 7 EIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLT--VREN----- 79 (137)
T ss_dssp EEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSB--HHHH-----
T ss_pred EEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccc--cccc-----
Confidence 467899999999999999999999999987 7899999876544 22234567888888867777663 3333
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASS 367 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----Pts 367 (509)
.....+..+.+.+....+...........||+||+|| +.||+||+.+|.++ ||+
T Consensus 80 -------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~r----l~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQR----LALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHH----HHHHHHHHTTSSEEEEESTTT
T ss_pred -------cccccccccccccccccccccccccccchhhHHHHHH----HHHHHHHHcCCCEEEEeCCCC
Confidence 1122344555555543332222233347899999999 99999999999998 764
No 379
>PRK01889 GTPase RsgA; Reviewed
Probab=99.54 E-value=4.4e-14 Score=147.15 Aligned_cols=145 Identities=23% Similarity=0.285 Sum_probs=97.9
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH-hcCCcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCeEEEeehhhhHHh
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLEAYAREI-DKYKRTLLLVNKADLLPFS-VRKRWAKYFKDHDILFVFWSAKAASAA 155 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~-~~~K~~iLVlNK~DL~p~~-~~~~W~~yf~~~gi~~if~Sa~~~~~~ 155 (509)
++.++|.|++|+++. |-+. +..+++|+..+ ..+.+.+||+||+||++.. ....|...+ ..|+.++++|++
T Consensus 109 iaANvD~vliV~s~~-p~~~-~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~-~~g~~Vi~vSa~----- 180 (356)
T PRK01889 109 IAANVDTVFIVCSLN-HDFN-LRRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL-APGVPVLAVSAL----- 180 (356)
T ss_pred EEEeCCEEEEEEecC-CCCC-hhHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh-CCCCcEEEEECC-----
Confidence 378999999999995 5432 23778887554 3477889999999999852 122344444 557788888874
Q ss_pred hhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccccccCccCCCCcEEEE
Q 010472 156 LEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVDESFAGNVAPKNVIVGF 235 (509)
Q Consensus 156 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~vgl 235 (509)
+|. +.++|...+ .+|++++|
T Consensus 181 -~g~-----------------------gl~~L~~~L------------------------------------~~g~~~~l 200 (356)
T PRK01889 181 -DGE-----------------------GLDVLAAWL------------------------------------SGGKTVAL 200 (356)
T ss_pred -CCc-----------------------cHHHHHHHh------------------------------------hcCCEEEE
Confidence 222 233444332 35789999
Q ss_pred EecCCCCHhHHHHHHhcCCc--ceEEeeCC-----cccccceeeecCeEEEEeCCCccCCCC
Q 010472 236 VGYPNVGKSSTINALVGQKR--TGVTSTPG-----KTKHFQTLIISEKLVLCDCPGLVFPSF 290 (509)
Q Consensus 236 vG~nGaGKSTLln~L~G~~~--~g~~~~~G-----~t~~~~~~~~~~~i~l~d~pg~~~p~~ 290 (509)
+|+||+|||||+|+|+|... .|.+...+ +|.+.+...+.....++|+||+..+.+
T Consensus 201 vG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG~~~~~l 262 (356)
T PRK01889 201 LGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPGMRELQL 262 (356)
T ss_pred ECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeecCCCchhhhcc
Confidence 99999999999999999876 66666543 222223333444566788888865444
No 380
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.54 E-value=5.9e-15 Score=168.70 Aligned_cols=210 Identities=13% Similarity=0.112 Sum_probs=150.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc----ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR----TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~----~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
-+.+|..+||+|.+|||||||||+|+|... .|.+.+.|..+...+ ..+.++||.|..+..|.+++.+...+.+.
T Consensus 813 ~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~t--F~R~~GYvqQ~DiH~~~~TVrESL~fSA~ 890 (1391)
T KOG0065|consen 813 AFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQET--FARVSGYVEQQDIHSPELTVRESLRFSAA 890 (1391)
T ss_pred EecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhh--hccccceeecccccCcccchHHHHHHHHH
Confidence 467899999999999999999999999976 678889998775332 45678999999999888854443333332
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCC----CCccccCCCchHHHHHHHHHHcCCce-----eCCCCCHH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKP----KPYESQSRPPLALELLRAYCASRGYV-----ASSGLPDE 372 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~----LSgGq~QR~~~~~~La~ALa~~p~lL-----PtsGLD~~ 372 (509)
+..... .+..+..+++.+.++.++|.+ |.+..++. ||.+||+| +.|+--|+.+|+.| ||+|||..
T Consensus 891 LRlp~~-v~~~ek~~yVe~Vi~lleL~~-~~daiVG~~G~GLs~eQRKr----LTIgVELvA~P~~ilFLDEPTSGLDsq 964 (1391)
T KOG0065|consen 891 LRLPKE-VSDEEKYEYVEEVIELLELKE-YADALVGLPGSGLSTEQRKR----LTIGVELVANPSSILFLDEPTSGLDSQ 964 (1391)
T ss_pred HcCCCc-CCHHHHHHHHHHHHHHhCchh-hhhhhccCCCCCCCHHHhce----eeEEEEEecCCceeEEecCCCCCccHH
Confidence 221111 122233344444444445665 55555554 99999999 99999999999654 99999999
Q ss_pred HH-HHHHHHHHhhc-CCccEEE-cCCCCChhhccchhhHhhcccccccCCCCccccC-------------cCCCCCCCcc
Q 010472 373 TR-AARIILKDFID-GKLPHFE-MPPGMSHEEVGMEDTQASSLLELHESDASDAEEV-------------PAHGDRTTPV 436 (509)
Q Consensus 373 ~r-~~~~lLkd~~~-gkl~~~~-~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~ 436 (509)
+. .+..+++.+.+ |+.++|+ +=|..+-=|..|+.....+||+.+..++-+..-. .-++++|+.-
T Consensus 965 aA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~ 1044 (1391)
T KOG0065|consen 965 AAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEW 1044 (1391)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHH
Confidence 99 89999999976 6666664 5566666677899999999999998777654322 1122355666
Q ss_pred HHHHhcc
Q 010472 437 LEHVLDD 443 (509)
Q Consensus 437 ~~~~~~~ 443 (509)
|=||.+.
T Consensus 1045 mLevi~~ 1051 (1391)
T KOG0065|consen 1045 MLEVIGA 1051 (1391)
T ss_pred HHhhccc
Confidence 6666664
No 381
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.52 E-value=2.3e-14 Score=173.54 Aligned_cols=168 Identities=15% Similarity=0.087 Sum_probs=118.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
.+++|++++|+|+||||||||+++|+|... .|.+.++| .++|+.|...+|+ .+..+++..|..
T Consensus 660 ~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i~yv~Q~~~l~~---~Ti~eNI~~g~~ 724 (1522)
T TIGR00957 660 SIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------------SVAYVPQQAWIQN---DSLRENILFGKA 724 (1522)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC------------EEEEEcCCccccC---CcHHHHhhcCCc
Confidence 578999999999999999999999999976 67777665 4889988776653 478889887642
Q ss_pred CcchhhhHHHHHHHHHHhCCcc--------chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRH--------VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPD 371 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~--------~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~ 371 (509)
.+. +....+.+.+... +... ........|||||+|| ++||||++.+|+++ |+++||.
T Consensus 725 -~~~-----~~~~~~~~~~~l~~~l~~~~~g~~t-~ig~~g~~LSGGQkqR----iaLARAl~~~~~illLDEp~saLD~ 793 (1522)
T TIGR00957 725 -LNE-----KYYQQVLEACALLPDLEILPSGDRT-EIGEKGVNLSGGQKQR----VSLARAVYSNADIYLFDDPLSAVDA 793 (1522)
T ss_pred -cCH-----HHHHHHHHHhCCHHHHHhcCCCCCc-eecCCCCCCCHHHHHH----HHHHHHHhcCCCEEEEcCCccccCH
Confidence 111 1112222222211 1111 1123456799999999 99999999999998 9999999
Q ss_pred HHH-HHHHHHHH---hhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 372 ETR-AARIILKD---FIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 372 ~~r-~~~~lLkd---~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
... .+.+.+.. +.+++ +++..+|....... ++.+.+++.|++++.++.
T Consensus 794 ~~~~~i~~~l~~~~~~~~~~-tvIlvTH~~~~l~~-~D~ii~l~~G~i~~~g~~ 845 (1522)
T TIGR00957 794 HVGKHIFEHVIGPEGVLKNK-TRILVTHGISYLPQ-VDVIIVMSGGKISEMGSY 845 (1522)
T ss_pred HHHHHHHHHHhhhhhhhcCC-EEEEEeCChhhhhh-CCEEEEecCCeEEeeCCH
Confidence 998 77776653 34454 44455677777666 466677778888775543
No 382
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.52 E-value=6.2e-14 Score=140.23 Aligned_cols=161 Identities=27% Similarity=0.317 Sum_probs=111.9
Q ss_pred cccCcccccHHHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH-hcCCcEEEEEeCCCCCCHHHHH--HHHHH
Q 010472 60 LVLTPFEKNLDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREI-DKYKRTLLLVNKADLLPFSVRK--RWAKY 136 (509)
Q Consensus 60 ~~lt~fE~nle~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~-~~~K~~iLVlNK~DL~p~~~~~--~W~~y 136 (509)
+++..+++.-..-|. .+.+.|-+++|+-+-+|-++. ..|++|+-.+ ..+-..||||||+||++.+... ++...
T Consensus 61 ~I~~i~~Rkn~L~Rp---~v~n~d~~iiIvs~~~P~~~~-~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~ 136 (301)
T COG1162 61 VIEKILPRKNVLIRP---PVANNDQAIIVVSLVDPDFNT-NLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLRE 136 (301)
T ss_pred eEEEEecccCceeCC---cccccceEEEEEeccCCCCCH-HHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHH
Confidence 344444443333333 567789999999999999855 4677777544 3467788999999999887665 68888
Q ss_pred HHhcCCeEEEeehhhhHHhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcc
Q 010472 137 FKDHDILFVFWSAKAASAALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQ 216 (509)
Q Consensus 137 f~~~gi~~if~Sa~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~~~~~ 216 (509)
|...|+.+++.|++. +. +.++|.+.+
T Consensus 137 y~~~gy~v~~~s~~~------~~-----------------------~~~~l~~~l------------------------- 162 (301)
T COG1162 137 YEDIGYPVLFVSAKN------GD-----------------------GLEELAELL------------------------- 162 (301)
T ss_pred HHhCCeeEEEecCcC------cc-----------------------cHHHHHHHh-------------------------
Confidence 999999999998751 11 223333322
Q ss_pred cccccccCccCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEee-CC----cccccceeeecCeEEEEeCCCccCCC
Q 010472 217 SVDESFAGNVAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTST-PG----KTKHFQTLIISEKLVLCDCPGLVFPS 289 (509)
Q Consensus 217 ~~~~~~~~~~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~-~G----~t~~~~~~~~~~~i~l~d~pg~~~p~ 289 (509)
.|.++.++|++|||||||+|.|.+... .|.++- .| +|.+...+.+..+-.++||||+--..
T Consensus 163 ------------~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~~~ 230 (301)
T COG1162 163 ------------AGKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSLG 230 (301)
T ss_pred ------------cCCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCccC
Confidence 356899999999999999999998655 444433 22 34444445555677899999987544
Q ss_pred C
Q 010472 290 F 290 (509)
Q Consensus 290 ~ 290 (509)
+
T Consensus 231 l 231 (301)
T COG1162 231 L 231 (301)
T ss_pred c
Confidence 4
No 383
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.50 E-value=1.8e-14 Score=138.16 Aligned_cols=155 Identities=12% Similarity=0.049 Sum_probs=100.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCcce-----------EEeeCCcccccceeeecCeEEEEeCCCccCCCCcccH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKRTG-----------VTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISR 294 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~~g-----------~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~ 294 (509)
++.+| +++|+|+||||||||+++|+|+.... .+.+.|..... ......++++.|....+ +
T Consensus 19 ~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~vfq~~~~~--~---- 89 (197)
T cd03278 19 PFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK--PANFAEVTLTFDNSDGR--Y---- 89 (197)
T ss_pred ecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC--CCceEEEEEEEEcCCCc--e----
Confidence 35678 99999999999999999999886421 12222222111 11123466665533322 1
Q ss_pred HHHHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHH----cCCce----eC
Q 010472 295 YDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCA----SRGYV----AS 366 (509)
Q Consensus 295 ~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~----~p~lL----Pt 366 (509)
+... ...+..+.+. .. +....+..||+||+|| ++|+++++. .|.++ |+
T Consensus 90 ------~~~~-------~~~~~~~l~~------~~-~~~~~~~~LS~G~kqr----l~la~~l~~~~~~~~~illlDEP~ 145 (197)
T cd03278 90 ------SIIS-------QGDVSEIIEA------PG-KKVQRLSLLSGGEKAL----TALALLFAIFRVRPSPFCVLDEVD 145 (197)
T ss_pred ------eEEe-------hhhHHHHHhC------CC-ccccchhhcCHHHHHH----HHHHHHHHHhccCCCCEEEEeCCc
Confidence 1000 1122223332 12 3456678899999999 999999974 45766 99
Q ss_pred CCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccc
Q 010472 367 SGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLE 414 (509)
Q Consensus 367 sGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~ 414 (509)
+|||+..+ .+..+|+++.++ ..++..+|.+...++|++...+...++
T Consensus 146 ~~LD~~~~~~l~~~l~~~~~~-~tiIiitH~~~~~~~~d~v~~~~~~~~ 193 (197)
T cd03278 146 AALDDANVERFARLLKEFSKE-TQFIVITHRKGTMEAADRLYGVTMQES 193 (197)
T ss_pred ccCCHHHHHHHHHHHHHhccC-CEEEEEECCHHHHhhcceEEEEEeccC
Confidence 99999999 999999998775 456667788777777777666654443
No 384
>PLN03073 ABC transporter F family; Provisional
Probab=99.50 E-value=7.3e-15 Score=165.42 Aligned_cols=92 Identities=11% Similarity=-0.005 Sum_probs=73.0
Q ss_pred HHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEc
Q 010472 319 ANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARIILKDFIDGKLPHFEM 393 (509)
Q Consensus 319 ~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~ 393 (509)
...+..++|......+.+..||||++|| ++||+||+.+|.+| ||++||+.++ .+..+|+.+ + .+++..
T Consensus 325 ~~~L~~lgl~~~~~~~~~~~LSgG~k~r----v~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~-~tviiv 397 (718)
T PLN03073 325 ASILAGLSFTPEMQVKATKTFSGGWRMR----IALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--P-KTFIVV 397 (718)
T ss_pred HHHHHHCCCChHHHhCchhhCCHHHHHH----HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--C-CEEEEE
Confidence 3344444554223456678999999999 99999999999998 9999999999 999999987 3 356666
Q ss_pred CCCCChhhccchhhHhhccccccc
Q 010472 394 PPGMSHEEVGMEDTQASSLLELHE 417 (509)
Q Consensus 394 pp~~~~~~~~~~~~~~~~~~~~~~ 417 (509)
.|+......+++.+..++.|++..
T Consensus 398 sHd~~~l~~~~d~i~~l~~g~i~~ 421 (718)
T PLN03073 398 SHAREFLNTVVTDILHLHGQKLVT 421 (718)
T ss_pred ECCHHHHHHhCCEEEEEECCEEEE
Confidence 788888777777788888888864
No 385
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=5.5e-14 Score=130.70 Aligned_cols=160 Identities=12% Similarity=0.091 Sum_probs=110.4
Q ss_pred ccCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEE-eCCCccCCCCcccHHHHHHh-
Q 010472 225 NVAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLC-DCPGLVFPSFSISRYDMVAS- 300 (509)
Q Consensus 225 ~~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~-d~pg~~~p~~~~~~~e~v~~- 300 (509)
-.+.+|+.+-|.|+||+|||||+++|+|+.. +|.+.+.|...+.........+.|+ -++|+ -+.+ ++.||+.+
T Consensus 23 f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~gi-K~eL--Ta~ENL~F~ 99 (209)
T COG4133 23 FTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGI-KTEL--TALENLHFW 99 (209)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccc-cchh--hHHHHHHHH
Confidence 3577899999999999999999999999987 8999998766544332222333333 45565 3555 45555433
Q ss_pred -ccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-
Q 010472 301 -GVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR- 374 (509)
Q Consensus 301 -g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r- 374 (509)
.++.. .....+..+.+.++ |.. +.+.+...||-||++| ++|||-++..+.+. |+++||....
T Consensus 100 ~~~~~~----~~~~~i~~Al~~vg---L~g-~~dlp~~~LSAGQqRR----vAlArL~ls~~pLWiLDEP~taLDk~g~a 167 (209)
T COG4133 100 QRFHGS----GNAATIWEALAQVG---LAG-LEDLPVGQLSAGQQRR----VALARLWLSPAPLWILDEPFTALDKEGVA 167 (209)
T ss_pred HHHhCC----CchhhHHHHHHHcC---ccc-ccccchhhcchhHHHH----HHHHHHHcCCCCceeecCcccccCHHHHH
Confidence 22211 01123334445554 443 3445677899999999 99999999888875 9999999999
Q ss_pred HHHHHHHHh-hcCCccEEEcCCCCCh
Q 010472 375 AARIILKDF-IDGKLPHFEMPPGMSH 399 (509)
Q Consensus 375 ~~~~lLkd~-~~gkl~~~~~pp~~~~ 399 (509)
.+..++..- .+|++++.++...+..
T Consensus 168 ~l~~l~~~H~~~GGiVllttHq~l~~ 193 (209)
T COG4133 168 LLTALMAAHAAQGGIVLLTTHQPLPI 193 (209)
T ss_pred HHHHHHHHHhcCCCEEEEecCCccCC
Confidence 777777664 5688888876655443
No 386
>PTZ00243 ABC transporter; Provisional
Probab=99.50 E-value=5.2e-14 Score=170.42 Aligned_cols=172 Identities=15% Similarity=0.064 Sum_probs=116.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
.+++|++++|+|+|||||||||++|+|... .|.+.+ ...++|++|...+|+ .+..+++..+..
T Consensus 682 ~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~------------~~~i~yv~Q~~~l~~---~Tv~enI~~~~~ 746 (1560)
T PTZ00243 682 SVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWA------------ERSIAYVPQQAWIMN---ATVRGNILFFDE 746 (1560)
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE------------CCeEEEEeCCCccCC---CcHHHHHHcCCh
Confidence 578999999999999999999999999976 566543 246889988766653 377888876531
Q ss_pred CcchhhhHHHHHH--HHHHhCCcc--chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-
Q 010472 304 PIDRMTEHRQAVQ--VVANRVPRH--VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR- 374 (509)
Q Consensus 304 ~~~~~~~~~~~~~--~i~~~l~~~--~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r- 374 (509)
.+. .......+ .+.+.+..+ ++.. ........|||||+|| ++||||++.+|+++ |+++||+...
T Consensus 747 -~~~-~~~~~~~~~~~l~~~l~~l~~g~~t-~i~~~g~~LSGGQkqR----vaLARAl~~~p~illLDEP~saLD~~~~~ 819 (1560)
T PTZ00243 747 -EDA-ARLADAVRVSQLEADLAQLGGGLET-EIGEKGVNLSGGQKAR----VSLARAVYANRDVYLLDDPLSALDAHVGE 819 (1560)
T ss_pred -hhH-HHHHHHHHHhhhHHHHHHhhccchH-HhcCCCCCCCHHHHHH----HHHHHHHhcCCCEEEEcCccccCCHHHHH
Confidence 111 00111111 111122211 3333 2344577899999999 99999999999988 9999999876
Q ss_pred HHH-HHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 375 AAR-IILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 375 ~~~-~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
.+. .++.....|+ +++..+|+.....+ ++.+.+++.|++++.++.
T Consensus 820 ~i~~~~~~~~~~~~-TvIlvTH~~~~~~~-ad~ii~l~~G~i~~~G~~ 865 (1560)
T PTZ00243 820 RVVEECFLGALAGK-TRVLATHQVHVVPR-ADYVVALGDGRVEFSGSS 865 (1560)
T ss_pred HHHHHHHHHhhCCC-EEEEEeCCHHHHHh-CCEEEEEECCEEEEecCH
Confidence 554 4444444554 44555677777766 466667778887765544
No 387
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.49 E-value=2.1e-14 Score=131.37 Aligned_cols=159 Identities=16% Similarity=0.120 Sum_probs=111.5
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeC--Cccccccee-------eecCeEEEEeCCCccCCCCcccH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTP--GKTKHFQTL-------IISEKLVLCDCPGLVFPSFSISR 294 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~--G~t~~~~~~-------~~~~~i~l~d~pg~~~p~~~~~~ 294 (509)
+++.|+|+++=|++|+|||||+++|-|.+. .|.+.+. |...+.... ..+..++|+.|.--+.|..+ .
T Consensus 33 sV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~--a 110 (235)
T COG4778 33 SVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVS--A 110 (235)
T ss_pred EecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcc--h
Confidence 467899999999999999999999999876 6777664 332322111 11345788888666667653 2
Q ss_pred HHHHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 295 YDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 295 ~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
.+.++..++... .....+...+...+.++.+.+.+..-.|.+.|||++|| +.|||.++.+..+| ||+.||
T Consensus 111 LdVvaePll~~g--v~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQR----VNIaRgfivd~pILLLDEPTasLD 184 (235)
T COG4778 111 LDVVAEPLLARG--VPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQR----VNIARGFIVDYPILLLDEPTASLD 184 (235)
T ss_pred HHHHHhHHHHcC--CCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchhee----hhhhhhhhccCceEEecCCccccc
Confidence 333333222111 11223444555556666676656566788999999999 99999999999987 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEE
Q 010472 371 DETR-AARIILKDFIDGKLPHFE 392 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~ 392 (509)
..+| .+.++|++-+..+..++-
T Consensus 185 a~Nr~vVveli~e~Ka~GaAlvG 207 (235)
T COG4778 185 ATNRAVVVELIREAKARGAALVG 207 (235)
T ss_pred ccchHHHHHHHHHHHhcCceEEE
Confidence 9999 899999998775544443
No 388
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.46 E-value=1.4e-13 Score=149.24 Aligned_cols=147 Identities=18% Similarity=0.111 Sum_probs=105.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCcc-CCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLV-FPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~-~p~~~~~~~e~v~~g~ 302 (509)
.+..|+.+|||||||+||||||++|+|... +|.+.+.- + -.++|++|.... ++.. +..+.+....
T Consensus 344 ~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~-~---------v~igyf~Q~~~~l~~~~--t~~d~l~~~~ 411 (530)
T COG0488 344 RIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE-T---------VKIGYFDQHRDELDPDK--TVLEELSEGF 411 (530)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC-c---------eEEEEEEehhhhcCccC--cHHHHHHhhC
Confidence 577999999999999999999999999765 45554432 1 147888886533 2332 3444443322
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHH
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AAR 377 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~ 377 (509)
-.. ....+...+.++++...-..+.+..|||||+.| +.||+.++..|.+| ||+.||..++ ++.
T Consensus 412 ~~~--------~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~R----l~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe 479 (530)
T COG0488 412 PDG--------DEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKAR----LLLAKLLLQPPNLLLLDEPTNHLDIESLEALE 479 (530)
T ss_pred ccc--------cHHHHHHHHHHcCCChHHHhCchhhcCHhHHHH----HHHHHHhccCCCEEEEcCCCccCCHHHHHHHH
Confidence 110 023344445555564434466788899999999 99999999999998 9999999999 999
Q ss_pred HHHHHhhcCCccEEEcCCCC
Q 010472 378 IILKDFIDGKLPHFEMPPGM 397 (509)
Q Consensus 378 ~lLkd~~~gkl~~~~~pp~~ 397 (509)
..|.+| .|.++++++.+.+
T Consensus 480 ~aL~~f-~Gtvl~VSHDr~F 498 (530)
T COG0488 480 EALLDF-EGTVLLVSHDRYF 498 (530)
T ss_pred HHHHhC-CCeEEEEeCCHHH
Confidence 999998 6777778877653
No 389
>PLN03130 ABC transporter C family member; Provisional
Probab=99.45 E-value=1.1e-13 Score=167.78 Aligned_cols=168 Identities=15% Similarity=0.101 Sum_probs=118.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--c-eEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--T-GVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~-g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
.+++|+.++|+|++|||||||+++|+|... . |.+. ++..++|++|...+|. .+..+|+..|.
T Consensus 639 ~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~------------l~~~Iayv~Q~p~Lfn---gTIreNI~fg~ 703 (1622)
T PLN03130 639 DVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV------------IRGTVAYVPQVSWIFN---ATVRDNILFGS 703 (1622)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEE------------EcCeEEEEcCccccCC---CCHHHHHhCCC
Confidence 578999999999999999999999999986 4 5554 3457999999888864 48889999874
Q ss_pred CCcchhhhHHHHHHHHHHhCCcc--------chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRH--------VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~--------~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
- .+ .+....+.+.+... |+.... ......|||||+|| ++||||+..+++++ |+++||
T Consensus 704 ~-~d-----~e~y~~vl~a~~L~~di~~LP~Gd~T~I-Ge~G~~LSGGQKQR----IaLARAly~~~~IlLLDEptSALD 772 (1622)
T PLN03130 704 P-FD-----PERYERAIDVTALQHDLDLLPGGDLTEI-GERGVNISGGQKQR----VSMARAVYSNSDVYIFDDPLSALD 772 (1622)
T ss_pred c-cc-----HHHHHHHHHHhCcHHHHHhCCCcccccc-cCCCCCCCHHHHHH----HHHHHHHhCCCCEEEECCCccccC
Confidence 2 21 12233333333211 111101 11234699999999 99999999999987 999999
Q ss_pred HHHH-HH-HHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 371 DETR-AA-RIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 371 ~~~r-~~-~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
.... .+ ..+|+.+.+|+++ +..+|....-..+ +.+.+++.|++++.++.
T Consensus 773 ~~~~~~I~~~~l~~~l~~kTv-IlVTH~l~~l~~a-D~Ii~L~~G~i~e~Gt~ 823 (1622)
T PLN03130 773 AHVGRQVFDKCIKDELRGKTR-VLVTNQLHFLSQV-DRIILVHEGMIKEEGTY 823 (1622)
T ss_pred HHHHHHHHHHHhhHHhcCCEE-EEEECCHhHHHhC-CEEEEEeCCEEEEeCCH
Confidence 8876 44 5677776666654 4445666655554 45566778888775543
No 390
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.45 E-value=1e-12 Score=140.19 Aligned_cols=162 Identities=25% Similarity=0.318 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCC-eEEEe
Q 010472 69 LDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDI-LFVFW 147 (509)
Q Consensus 69 le~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~gi-~~if~ 147 (509)
-++.+|....++.+|+||+|+|++.++......+..++++ .++|+++|+||+|+...+.. . ..|.+.|. .++.+
T Consensus 66 ~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~--~~~piilVvNK~D~~~~~~~--~-~~~~~lg~~~~~~v 140 (429)
T TIGR03594 66 KQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRK--SGKPVILVANKIDGKKEDAV--A-AEFYSLGFGEPIPI 140 (429)
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH--hCCCEEEEEECccCCccccc--H-HHHHhcCCCCeEEE
Confidence 4578888999999999999999999875444444455543 37899999999999875432 1 23445676 46667
Q ss_pred ehhhhHHhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccccccCccC
Q 010472 148 SAKAASAALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVDESFAGNVA 227 (509)
Q Consensus 148 Sa~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~i 227 (509)
||. +|. |.++|++.+.....+ .. . .....
T Consensus 141 Sa~------~g~-----------------------gv~~ll~~i~~~l~~-------~~--~-------------~~~~~ 169 (429)
T TIGR03594 141 SAE------HGR-----------------------GIGDLLDAILELLPE-------EE--E-------------EEEEE 169 (429)
T ss_pred eCC------cCC-----------------------ChHHHHHHHHHhcCc-------cc--c-------------ccccc
Confidence 875 333 334666655432210 00 0 00001
Q ss_pred CCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee---cCeEEEEeCCCcc
Q 010472 228 PKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII---SEKLVLCDCPGLV 286 (509)
Q Consensus 228 ~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~---~~~i~l~d~pg~~ 286 (509)
.....++++|.+|+|||||+|.|+|....-+...+|+|.......+ ...+.++|+||+.
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~ 231 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIR 231 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCcc
Confidence 1235799999999999999999999765445567787765432222 2368899999975
No 391
>PLN03232 ABC transporter C family member; Provisional
Probab=99.45 E-value=1.2e-13 Score=167.10 Aligned_cols=170 Identities=14% Similarity=0.110 Sum_probs=116.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
.+++|+.++|+|++|||||||+++|+|... .|.+ ..++..++|+.|...+|. .+..+|+..|.
T Consensus 639 ~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i-----------~~~~~~Iayv~Q~p~Lf~---gTIreNI~fg~- 703 (1495)
T PLN03232 639 EIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS-----------VVIRGSVAYVPQVSWIFN---ATVRENILFGS- 703 (1495)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCE-----------EEecCcEEEEcCcccccc---ccHHHHhhcCC-
Confidence 578999999999999999999999999987 3322 134567999999888864 47889999874
Q ss_pred CcchhhhHHHHHHHHHHhCCcc-chhh---Hh---hccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRH-VIEN---VC---KINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDE 372 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~-~L~~---~~---~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~ 372 (509)
+.+. +....+.+.+... .+.. -+ .......|||||+|| ++||||+..+|+++ |+++||..
T Consensus 704 ~~~~-----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQR----IaLARAly~~~~IlLLDEptSaLD~~ 774 (1495)
T PLN03232 704 DFES-----ERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQR----VSMARAVYSNSDIYIFDDPLSALDAH 774 (1495)
T ss_pred ccCH-----HHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHH----HHHHHHHhcCCCEEEEcCCccccCHH
Confidence 2211 2223333333211 1110 00 011234699999999 99999999999988 99999988
Q ss_pred HH-HH-HHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 373 TR-AA-RIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 373 ~r-~~-~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
.. .+ ..+|..+..+++++ ..+|....-..+ |.+.+++.|++++.++.
T Consensus 775 t~~~I~~~~l~~~l~~kT~I-lvTH~~~~l~~a-D~Ii~L~~G~i~~~Gt~ 823 (1495)
T PLN03232 775 VAHQVFDSCMKDELKGKTRV-LVTNQLHFLPLM-DRIILVSEGMIKEEGTF 823 (1495)
T ss_pred HHHHHHHHHhhhhhcCCEEE-EEECChhhHHhC-CEEEEEeCCEEEEecCH
Confidence 76 45 45676666666544 444666655554 55666678888776543
No 392
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.44 E-value=2.1e-13 Score=132.13 Aligned_cols=164 Identities=13% Similarity=0.003 Sum_probs=97.8
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCc---ceEEeeCCcccccceeeecCeEEEEeCCC-ccCCCCcccHHHHHHhccCC
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKR---TGVTSTPGKTKHFQTLIISEKLVLCDCPG-LVFPSFSISRYDMVASGVLP 304 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~---~g~~~~~G~t~~~~~~~~~~~i~l~d~pg-~~~p~~~~~~~e~v~~g~~~ 304 (509)
.|++++|+|+||+|||||+++|++.+. .+...................+.+..+.. ..+ ..... .++
T Consensus 27 ~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~---~~~r~----~gl-- 97 (213)
T cd03279 27 NNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY---RVERS----RGL-- 97 (213)
T ss_pred ccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEE---EEEEe----cCC--
Confidence 478999999999999999999996432 11111110000000001112234333322 111 00000 011
Q ss_pred cchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHc----------CCce----eCCCCC
Q 010472 305 IDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCAS----------RGYV----ASSGLP 370 (509)
Q Consensus 305 ~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~----------p~lL----PtsGLD 370 (509)
+.......+ .+....+.. +....+..+|+|++|| ++|++|++.. |.++ |++|+|
T Consensus 98 -----~~~~~~~~~--~l~~g~l~~-~l~~~~~~lS~G~~~r----~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD 165 (213)
T cd03279 98 -----DYDQFTRIV--LLPQGEFDR-FLARPVSTLSGGETFL----ASLSLALALSEVLQNRGGARLEALFIDEGFGTLD 165 (213)
T ss_pred -----CHHHHHHhh--hhhhcchHH-HhcCCccccCHHHHHH----HHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCC
Confidence 111111111 122223444 5567788999999999 9999999864 4565 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhccc
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLL 413 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~ 413 (509)
+..+ .+..+|+++.+.+.+++..+|++.....+++.+.+++.|
T Consensus 166 ~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~ 209 (213)
T cd03279 166 PEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTP 209 (213)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecC
Confidence 9999 899999999775557777778887777777666665544
No 393
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.43 E-value=1.5e-12 Score=139.31 Aligned_cols=160 Identities=28% Similarity=0.313 Sum_probs=105.0
Q ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCe-EEEeeh
Q 010472 71 MWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDIL-FVFWSA 149 (509)
Q Consensus 71 ~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~gi~-~if~Sa 149 (509)
+.+|....+..+|+||+|+|++++.......+..++.. .++|+|+|+||+|+...+. ...+ |...|.. ++.+||
T Consensus 70 ~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~--~~~piilv~NK~D~~~~~~--~~~~-~~~lg~~~~~~iSa 144 (435)
T PRK00093 70 IREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRK--SNKPVILVVNKVDGPDEEA--DAYE-FYSLGLGEPYPISA 144 (435)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCcEEEEEECccCccchh--hHHH-HHhcCCCCCEEEEe
Confidence 55667778999999999999999875444444455554 3789999999999865321 2223 3355654 566787
Q ss_pred hhhHHhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccccccCccCCC
Q 010472 150 KAASAALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVDESFAGNVAPK 229 (509)
Q Consensus 150 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~ 229 (509)
. +|. +.+++++.+..... .. . .......
T Consensus 145 ~------~g~-----------------------gv~~l~~~I~~~~~-------~~----~------------~~~~~~~ 172 (435)
T PRK00093 145 E------HGR-----------------------GIGDLLDAILEELP-------EE----E------------EEDEEDE 172 (435)
T ss_pred e------CCC-----------------------CHHHHHHHHHhhCC-------cc----c------------ccccccc
Confidence 4 333 33466655543110 00 0 0000123
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceee---ecCeEEEEeCCCccC
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLI---ISEKLVLCDCPGLVF 287 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~---~~~~i~l~d~pg~~~ 287 (509)
...++|+|.+|+|||||+|.|+|....-+...+|+|+...... ....+.++|+||+.-
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~ 233 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRR 233 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCC
Confidence 5789999999999999999999987655666788886543222 234588999999853
No 394
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.43 E-value=1.4e-12 Score=140.89 Aligned_cols=161 Identities=25% Similarity=0.232 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCe-EEEee
Q 010472 70 DMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDIL-FVFWS 148 (509)
Q Consensus 70 e~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~gi~-~if~S 148 (509)
.+.+|....++.+|+||+|+|+++++......+..++. ..++|+|||+||+|+...+. ...+++ ..|+. .+++|
T Consensus 106 ~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~--~~~~piilV~NK~Dl~~~~~--~~~~~~-~~g~~~~~~iS 180 (472)
T PRK03003 106 SVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLR--RSGKPVILAANKVDDERGEA--DAAALW-SLGLGEPHPVS 180 (472)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHH--HcCCCEEEEEECccCCccch--hhHHHH-hcCCCCeEEEE
Confidence 46677778899999999999999987543333333333 24789999999999975322 122332 34443 34577
Q ss_pred hhhhHHhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccccccCccCC
Q 010472 149 AKAASAALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVDESFAGNVAP 228 (509)
Q Consensus 149 a~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~ 228 (509)
|+ +|.++ ++|++.+.....+ . . +. .....
T Consensus 181 A~------~g~gi-----------------------~eL~~~i~~~l~~---~---~---~~-------------~~~~~ 209 (472)
T PRK03003 181 AL------HGRGV-----------------------GDLLDAVLAALPE---V---P---RV-------------GSASG 209 (472)
T ss_pred cC------CCCCc-----------------------HHHHHHHHhhccc---c---c---cc-------------ccccc
Confidence 74 45443 4666655432211 0 0 00 00001
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCccccccee--ee-cCeEEEEeCCCcc
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTL--II-SEKLVLCDCPGLV 286 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~--~~-~~~i~l~d~pg~~ 286 (509)
....++|+|.+|||||||+|.|+|....-+..++|+|.+.... .. ...+.++|+||+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~ 270 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLR 270 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCcc
Confidence 2368999999999999999999997654456688888765322 22 2357899999974
No 395
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.43 E-value=1.8e-13 Score=136.42 Aligned_cols=97 Identities=7% Similarity=-0.033 Sum_probs=74.0
Q ss_pred HHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHc---CCce----eCCCCCHHHH-HHHHHHHHhhcCCcc
Q 010472 318 VANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCAS---RGYV----ASSGLPDETR-AARIILKDFIDGKLP 389 (509)
Q Consensus 318 i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~---p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~ 389 (509)
+.+.+..++|........+..||+|++|| +.||++|+.+ |.++ |++|||+..+ .+..+|+.+.+.+..
T Consensus 149 ~~~~L~~vgL~~l~l~~~~~~LSgGe~QR----l~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~t 224 (261)
T cd03271 149 KLQTLCDVGLGYIKLGQPATTLSGGEAQR----IKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNT 224 (261)
T ss_pred HHHHHHHcCCchhhhcCccccCCHHHHHH----HHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 34445555665433456678899999999 9999999997 5666 9999999999 999999999865556
Q ss_pred EEEcCCCCChhhccchhhHhh------cccccccCC
Q 010472 390 HFEMPPGMSHEEVGMEDTQAS------SLLELHESD 419 (509)
Q Consensus 390 ~~~~pp~~~~~~~~~~~~~~~------~~~~~~~~~ 419 (509)
++...|++...+. ++.+.++ .+|++++.+
T Consensus 225 vIiitH~~~~i~~-aD~ii~Lgp~~g~~~G~iv~~G 259 (261)
T cd03271 225 VVVIEHNLDVIKC-ADWIIDLGPEGGDGGGQVVASG 259 (261)
T ss_pred EEEEeCCHHHHHh-CCEEEEecCCcCCCCCEEEEeC
Confidence 7777788777765 5566666 778877654
No 396
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.42 E-value=1.3e-13 Score=143.13 Aligned_cols=187 Identities=13% Similarity=0.103 Sum_probs=128.8
Q ss_pred ccCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccc-cceeeecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 225 NVAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKH-FQTLIISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 225 ~~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~-~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
-.+.+|.++++|||+|+||||+++.|..... +|.+.++|.+.. .+...++..|++++|...+|.+ +...++..+
T Consensus 559 F~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd---TI~yNIrya 635 (790)
T KOG0056|consen 559 FTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND---TILYNIRYA 635 (790)
T ss_pred EEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecc---eeeeheeec
Confidence 3578999999999999999999999999876 899999998743 3334567889999998888754 333344333
Q ss_pred cCCcchhhhHHHH--HHHHHHhCCccchhhHhhccC---CCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHH
Q 010472 302 VLPIDRMTEHRQA--VQVVANRVPRHVIENVCKINL---PKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDE 372 (509)
Q Consensus 302 ~~~~~~~~~~~~~--~~~i~~~l~~~~L~~~~~~~~---~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~ 372 (509)
-.. ..-.+..++ ...+-+++ .++.+-|..+. .-.||||++|| ++|||++...|.++ .|++||..
T Consensus 636 k~~-AsneevyaAAkAA~IHdrI--l~fPegY~t~VGERGLkLSGGEKQR----VAiARtiLK~P~iIlLDEATSALDT~ 708 (790)
T KOG0056|consen 636 KPS-ASNEEVYAAAKAAQIHDRI--LQFPEGYNTRVGERGLKLSGGEKQR----VAIARTILKAPSIILLDEATSALDTN 708 (790)
T ss_pred CCC-CChHHHHHHHHHhhHHHHH--hcCchhhhhhhhhcccccCCcchhh----HHHHHHHhcCCcEEEEcchhhhcCCc
Confidence 211 111111111 11122222 12333343322 23599999999 99999999999997 89999976
Q ss_pred HH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 373 TR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 373 ~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
+. ++..-|..+..++++++.. |-++.- ..+|.+++...|+|+|.+..+.
T Consensus 709 tER~IQaaL~rlca~RTtIVvA-HRLSTi-vnAD~ILvi~~G~IvErG~Hee 758 (790)
T KOG0056|consen 709 TERAIQAALARLCANRTTIVVA-HRLSTI-VNADLILVISNGRIVERGRHEE 758 (790)
T ss_pred cHHHHHHHHHHHhcCCceEEEe-eeehhe-ecccEEEEEeCCeEeecCcHHH
Confidence 66 9999999999998776542 333322 2356677889999999776643
No 397
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.40 E-value=2.5e-13 Score=133.87 Aligned_cols=68 Identities=15% Similarity=0.111 Sum_probs=52.2
Q ss_pred ccCCCCCCccccCCCchHHHHHHHHHH----cCCce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhcc
Q 010472 333 INLPKPKPYESQSRPPLALELLRAYCA----SRGYV----ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVG 403 (509)
Q Consensus 333 ~~~~~~LSgGq~QR~~~~~~La~ALa~----~p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~ 403 (509)
...+..||+||+|| ++||+|++. .|.++ |++|||+..+ .++.+|+++.++ .++++..|.....++|
T Consensus 153 ~~~~~~lS~G~~~r----~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~-~~ii~~~h~~~~~~~~ 227 (243)
T cd03272 153 QQEMQQLSGGQKSL----VALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDG-AQFITTTFRPELLEVA 227 (243)
T ss_pred cccccccCHHHHHH----HHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCC-CEEEEEecCHHHHhhC
Confidence 35577899999999 999999974 46777 9999999999 999999999775 4455555554444444
Q ss_pred ch
Q 010472 404 ME 405 (509)
Q Consensus 404 ~~ 405 (509)
++
T Consensus 228 d~ 229 (243)
T cd03272 228 DK 229 (243)
T ss_pred CE
Confidence 43
No 398
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.37 E-value=1.7e-13 Score=135.97 Aligned_cols=71 Identities=7% Similarity=-0.102 Sum_probs=54.5
Q ss_pred hhccCCCCCCccccCCCchHHHHHHHHHH----cCCce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhh
Q 010472 331 CKINLPKPKPYESQSRPPLALELLRAYCA----SRGYV----ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEE 401 (509)
Q Consensus 331 ~~~~~~~~LSgGq~QR~~~~~~La~ALa~----~p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~ 401 (509)
+....+..||+|++|| ++||+||+. .|+++ |++|||+..+ .+..+|+++.+|. .++...|.....+
T Consensus 159 ~~~~~~~~lS~G~~qr----~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~-~ii~iSH~~~~~~ 233 (251)
T cd03273 159 VWKESLTELSGGQRSL----VALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGS-QFIVVSLKEGMFN 233 (251)
T ss_pred hhcccccccCHHHHHH----HHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCC-EEEEEECCHHHHH
Confidence 3446688999999999 999999984 66877 9999999999 9999999987664 4555555544444
Q ss_pred ccchh
Q 010472 402 VGMED 406 (509)
Q Consensus 402 ~~~~~ 406 (509)
.||+.
T Consensus 234 ~~d~v 238 (251)
T cd03273 234 NANVL 238 (251)
T ss_pred hCCEE
Confidence 55444
No 399
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.36 E-value=2.3e-12 Score=150.71 Aligned_cols=171 Identities=15% Similarity=0.105 Sum_probs=122.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
.+++|+.+||||+.||||||||.+|+|... .|.+.+.|. +.|+.|...++ +.++.+|+++|.-
T Consensus 543 ~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs------------iaYv~Q~pWI~---ngTvreNILFG~~ 607 (1381)
T KOG0054|consen 543 EIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS------------VAYVPQQPWIQ---NGTVRENILFGSP 607 (1381)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe------------EEEeccccHhh---CCcHHHhhhcCcc
Confidence 478999999999999999999999999887 787777763 78999988884 4588999999852
Q ss_pred CcchhhhHHHHHHHHHHhCCc-cchhhH------hhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPR-HVIENV------CKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDE 372 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~-~~L~~~------~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~ 372 (509)
.+ .+..+.+.+.|.. .+|+-+ ..-...-.|||||||| ++||||+-++.++. |.+++|..
T Consensus 608 -~d-----~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqR----IsLARAVY~~adIYLLDDplSAVDah 677 (1381)
T KOG0054|consen 608 -YD-----EERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQR----ISLARAVYQDADIYLLDDPLSAVDAH 677 (1381)
T ss_pred -cc-----HHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHH----HHHHHHHhccCCEEEEcCcchhhhHh
Confidence 22 1233444444431 111110 0011233699999999 99999999999987 99999987
Q ss_pred HH--HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 373 TR--AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 373 ~r--~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
.. .+.+.|+.+.++|+.++.+ |.+.-=.. ++.+.+++.|+|.+.++-+.
T Consensus 678 vg~~if~~ci~~~L~~KT~ILVT-Hql~~L~~-ad~Iivl~~G~I~~~Gty~e 728 (1381)
T KOG0054|consen 678 VGKHIFEECIRGLLRGKTVILVT-HQLQFLPH-ADQIIVLKDGKIVESGTYEE 728 (1381)
T ss_pred hhHHHHHHHHHhhhcCCEEEEEe-Cchhhhhh-CCEEEEecCCeEecccCHHH
Confidence 76 6778887777888766543 33322222 55666778888877655543
No 400
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.35 E-value=2.2e-12 Score=133.64 Aligned_cols=165 Identities=13% Similarity=0.134 Sum_probs=119.6
Q ss_pred CccCCCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 224 GNVAPKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 224 ~~~i~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
.-.+..|+++|++||||-||||++++|+|.+....+. .. .+.+--.|..+.|.+..++.+.+.....
T Consensus 361 ~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~--~~-----------~~~vSyKPQyI~~~~~gtV~~~l~~~~~ 427 (591)
T COG1245 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS--EE-----------DLKVSYKPQYISPDYDGTVEDLLRSAIR 427 (591)
T ss_pred CCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC--Cc-----------cceEeecceeecCCCCCcHHHHHHHhhh
Confidence 3467889999999999999999999999988733222 11 1122223456677777777655543321
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
. . ... -..-.+.+..+.|+. ...+....||||+.|| ++||.||++...+. |++.||.+.| .+..
T Consensus 428 ~-~-~~~----s~~~~ei~~pl~l~~-i~e~~v~~LSGGELQR----vaIaa~L~reADlYllDEPSA~LDvEqR~~vak 496 (591)
T COG1245 428 S-A-FGS----SYFKTEIVKPLNLED-LLERPVDELSGGELQR----VAIAAALSREADLYLLDEPSAYLDVEQRIIVAK 496 (591)
T ss_pred h-h-ccc----chhHHhhcCccchHH-HHhcccccCCchhHHH----HHHHHHhccccCEEEecCchhhccHHHHHHHHH
Confidence 1 0 101 011234455556776 4456678899999999 99999999999986 9999999999 8899
Q ss_pred HHHHhhc-CCccEEEcCCCCChhhccchhhHhhcc
Q 010472 379 ILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSL 412 (509)
Q Consensus 379 lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~ 412 (509)
.|+.+.. .+-+.+...|++--..|.++..++++|
T Consensus 497 vIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 497 VIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred HHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 9999876 467778889999999998888777655
No 401
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.34 E-value=1.4e-11 Score=139.56 Aligned_cols=163 Identities=28% Similarity=0.229 Sum_probs=101.7
Q ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCe-EEEee
Q 010472 70 DMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDIL-FVFWS 148 (509)
Q Consensus 70 e~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~gi~-~if~S 148 (509)
.+-+|....++.+|+||+|+|+++++......+..++. ..++|+|+|+||+|+...... ...|...|.. .+++|
T Consensus 343 ~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr--~~~~pvIlV~NK~D~~~~~~~---~~~~~~lg~~~~~~iS 417 (712)
T PRK09518 343 AIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLR--RAGKPVVLAVNKIDDQASEYD---AAEFWKLGLGEPYPIS 417 (712)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHH--hcCCCEEEEEECcccccchhh---HHHHHHcCCCCeEEEE
Confidence 46788888999999999999999876433222333333 348999999999999754221 1223334443 34577
Q ss_pred hhhhHHhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccccccCccCC
Q 010472 149 AKAASAALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVDESFAGNVAP 228 (509)
Q Consensus 149 a~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~ 228 (509)
|. +|.++ ++|++.+.+.... .. .. . ......
T Consensus 418 A~------~g~GI-----------------------~eLl~~i~~~l~~----~~-----~~----------~-~a~~~~ 448 (712)
T PRK09518 418 AM------HGRGV-----------------------GDLLDEALDSLKV----AE-----KT----------S-GFLTPS 448 (712)
T ss_pred CC------CCCCc-----------------------hHHHHHHHHhccc----cc-----cc----------c-cccCCC
Confidence 74 45443 4566555432210 00 00 0 000001
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceee--e-cCeEEEEeCCCcc
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLI--I-SEKLVLCDCPGLV 286 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~--~-~~~i~l~d~pg~~ 286 (509)
.-..++|+|.+|||||||+|.|+|....-+..++|+|++..... . ...+.++||||+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~ 509 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIK 509 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcc
Confidence 12579999999999999999999976544456788887653321 2 3457799999975
No 402
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.33 E-value=5.9e-13 Score=122.40 Aligned_cols=192 Identities=14% Similarity=0.140 Sum_probs=129.6
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCccccc-ceeeecCeEEEEe---CCCccCCCCcccHHHHHHhc
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHF-QTLIISEKLVLCD---CPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~-~~~~~~~~i~l~d---~pg~~~p~~~~~~~e~v~~g 301 (509)
+..|+++-+|||||+|||||+-.|+|+.+ +|.+.+.|....- ....+.+.-.|+. +|.+..|-| ..+ .
T Consensus 22 v~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~-----~YL--~ 94 (248)
T COG4138 22 VRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVW-----HYL--T 94 (248)
T ss_pred cccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhh-----hhh--h
Confidence 56799999999999999999999999998 8999999977532 1111211112222 233333322 111 1
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHc-CC------ce----eCCCCC
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCAS-RG------YV----ASSGLP 370 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~-p~------lL----PtsGLD 370 (509)
++-.+ ......+..++..+ +|.+ ...+....||||+.|| +-+|..+.+- |. +| |.++||
T Consensus 95 L~qP~--~~~a~~i~~i~~~L---~l~D-KL~Rs~~qLSGGEWQR----VRLAav~LQv~Pd~NP~~~LLllDEP~~~LD 164 (248)
T COG4138 95 LHQPD--KTRTELLNDVAGAL---ALDD-KLGRSTNQLSGGEWQR----VRLAAVVLQITPDANPAGQLLLLDEPMNSLD 164 (248)
T ss_pred hcCch--HHHHHHHHHHHhhh---cccc-hhhhhhhhcCccccee----eEEeEEEEEecCCCCccceeEEecCCCcchh
Confidence 11111 11123344444444 4555 3345567899999999 8887655442 22 22 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhc
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLD 442 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (509)
.... ++-.+|..+...++.++..-|+++-.-..++.+-.+..|++...+..+..-- .+.+.++|+
T Consensus 165 vAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt-------~~vL~q~fg 230 (248)
T COG4138 165 VAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLT-------PPVLAQAYG 230 (248)
T ss_pred HHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcC-------hHHHHHHhc
Confidence 9998 9999999999988899999999998888888888888888887777655432 256777776
No 403
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.31 E-value=3.1e-12 Score=149.54 Aligned_cols=187 Identities=15% Similarity=0.104 Sum_probs=131.5
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
.+.+|+.+||||..|||||||+++|..+.. .|.+.++|..... ....++.++.+++|...+|.. + +..++
T Consensus 1162 ~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG---T----vR~NL 1234 (1381)
T KOG0054|consen 1162 TIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG---T----VRFNL 1234 (1381)
T ss_pred EEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC---c----ccccc
Confidence 578999999999999999999999999876 7999999977533 334578899999999998754 2 22334
Q ss_pred CCcchhhhHHHHHHHHHHhCCc--------cchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPR--------HVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~--------~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
-|.+...| +.+-.+.+.+.. .+|.. .-..-...+|-||||. ++|||||.++.++| .|+++|
T Consensus 1235 DPf~e~sD--~~IW~ALe~~~Lk~~v~~~p~~Ld~-~v~egG~N~SvGQRQL----lCLARALLr~skILvLDEATAsVD 1307 (1381)
T KOG0054|consen 1235 DPFDEYSD--DEIWEALERCQLKDVVSSLPGGLDS-EVSEGGENFSVGQRQL----LCLARALLRKSKILVLDEATASVD 1307 (1381)
T ss_pred CcccccCH--HHHHHHHHHhChHHHHhhCCcCCCc-eecCCCccCChHHHHH----HHHHHHHhccCCEEEEecccccCC
Confidence 44433322 122222222211 11221 1112234699999999 99999999999998 899999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcC
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPA 428 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (509)
+.+- .+...|++--++.+ +++.-|-+..- ..+|.+++++.|+++|.|++...-++.
T Consensus 1308 ~~TD~lIQ~tIR~~F~dcT-VltIAHRl~TV-md~DrVlVld~G~v~EfdsP~~Ll~~~ 1364 (1381)
T KOG0054|consen 1308 PETDALIQKTIREEFKDCT-VLTIAHRLNTV-MDSDRVLVLDAGRVVEFDSPAELLSDK 1364 (1381)
T ss_pred hHHHHHHHHHHHHHhcCCe-EEEEeeccchh-hhcCeEEEeeCCeEeecCChHHHHhCC
Confidence 9998 78888887555543 44444554433 346778889999999988886655443
No 404
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.30 E-value=1.2e-13 Score=133.78 Aligned_cols=77 Identities=5% Similarity=-0.124 Sum_probs=54.3
Q ss_pred cchhhHhhccCCCCCCccccCCCchHHHHHHHHHH----cCCce----eCCCCCHHHH-HHHHHHHHhhcCCc-cEEEcC
Q 010472 325 HVIENVCKINLPKPKPYESQSRPPLALELLRAYCA----SRGYV----ASSGLPDETR-AARIILKDFIDGKL-PHFEMP 394 (509)
Q Consensus 325 ~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~----~p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl-~~~~~p 394 (509)
.++.+ .....+..+|+|++|| ++||+|++. .|.++ |++|+|+..+ .++.+|+++.++.. ++++
T Consensus 115 ~~L~~-~~~~~~~~lS~G~~~r----~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs-- 187 (212)
T cd03274 115 AQMPK-KSWKNISNLSGGEKTL----SSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVIS-- 187 (212)
T ss_pred ecccc-ccccchhhcCHHHHHH----HHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEE--
Confidence 34443 3345577899999999 999999975 36776 9999999999 99999999976543 3334
Q ss_pred CCCChhhccchhhHh
Q 010472 395 PGMSHEEVGMEDTQA 409 (509)
Q Consensus 395 p~~~~~~~~~~~~~~ 409 (509)
|.....++|+ .+.+
T Consensus 188 ~~~~~~~~~d-~v~~ 201 (212)
T cd03274 188 LRNNMFELAD-RLVG 201 (212)
T ss_pred CcHHHHHhCC-EEEE
Confidence 4433344444 4443
No 405
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.28 E-value=5.6e-12 Score=134.31 Aligned_cols=187 Identities=12% Similarity=0.119 Sum_probs=138.1
Q ss_pred ccCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccccee--eecCeEEEEeC----CCccCCCCcccHHH
Q 010472 225 NVAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTL--IISEKLVLCDC----PGLVFPSFSISRYD 296 (509)
Q Consensus 225 ~~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~--~~~~~i~l~d~----pg~~~p~~~~~~~e 296 (509)
-++.+||++||.|--|+|+|-|+++|.|..+ .|++.+.|........ .+...+.|++. .|++ +.+ +..+
T Consensus 280 f~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~-l~~--sI~~ 356 (500)
T COG1129 280 FTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLV-LDM--SIAE 356 (500)
T ss_pred eEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCc-CCC--cHHH
Confidence 4678999999999999999999999999766 7999999987655432 23446777754 4554 444 4455
Q ss_pred HHHhccCCcch---hhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCC
Q 010472 297 MVASGVLPIDR---MTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGL 369 (509)
Q Consensus 297 ~v~~g~~~~~~---~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGL 369 (509)
|+....+.... +.+.......+..++..+.+...-.......||||.||+ +.|++.|+.+|++| ||.|+
T Consensus 357 Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQK----VvlarwL~~~p~vLilDEPTRGI 432 (500)
T COG1129 357 NITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQK----VVLARWLATDPKVLILDEPTRGI 432 (500)
T ss_pred heehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhh----HHHHHHHhcCCCEEEECCCCcCc
Confidence 54333221100 122222223333444433443312235567899999999 99999999999998 99999
Q ss_pred CHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccC
Q 010472 370 PDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHES 418 (509)
Q Consensus 370 D~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~ 418 (509)
|.-++ .+..+|+++...+..++....++.+--..||++.+|..|+++..
T Consensus 433 DVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e 482 (500)
T COG1129 433 DVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGE 482 (500)
T ss_pred ccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEE
Confidence 99999 99999999999888888888999999989999999999999873
No 406
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.27 E-value=5.7e-12 Score=121.44 Aligned_cols=159 Identities=12% Similarity=0.074 Sum_probs=89.4
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHh----cCCcceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcc----cHHHHH
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALV----GQKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSI----SRYDMV 298 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~----G~~~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~----~~~e~v 298 (509)
+.+| +++|+|+||+|||||+.+|. |....+.....+.............+.++.+... .+.+.. +..+++
T Consensus 20 ~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~-~~~~~v~r~~~~~~~~ 97 (204)
T cd03240 20 FFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENAN-GKKYTITRSLAILENV 97 (204)
T ss_pred cCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCC-CCEEEEEEEhhHhhce
Confidence 4455 99999999999999999995 6654222111111100001112223444444321 122221 222222
Q ss_pred HhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCch--HHHHHHHHHHcCCce----eCCCCCHH
Q 010472 299 ASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPL--ALELLRAYCASRGYV----ASSGLPDE 372 (509)
Q Consensus 299 ~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~--~~~La~ALa~~p~lL----PtsGLD~~ 372 (509)
..+ + . . .+ .. .....+..||+|++||-.- .++|++|++.+|+++ |+++||+.
T Consensus 98 ~~~--~-----~--~---~~---------~~-~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~ 155 (204)
T cd03240 98 IFC--H-----Q--G---ES---------NW-PLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEE 155 (204)
T ss_pred eee--c-----h--H---HH---------HH-HHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHH
Confidence 211 0 0 0 11 11 1145577899999995110 167889999999998 99999998
Q ss_pred HHH--HHHHHHHhhcC-CccEEEcCCCCChhhccchhhHh
Q 010472 373 TRA--ARIILKDFIDG-KLPHFEMPPGMSHEEVGMEDTQA 409 (509)
Q Consensus 373 ~r~--~~~lLkd~~~g-kl~~~~~pp~~~~~~~~~~~~~~ 409 (509)
.+. +.++|+++.+. ...++..+|.+.....|++...+
T Consensus 156 ~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l 195 (204)
T cd03240 156 NIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRV 195 (204)
T ss_pred HHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEE
Confidence 864 88999998762 34455555555555555544433
No 407
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.20 E-value=4.6e-11 Score=114.61 Aligned_cols=150 Identities=15% Similarity=0.063 Sum_probs=92.3
Q ss_pred EEEEEecCCCCHhHHHHHHhcCCcceEEe--eCCccc-cc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhccCCcch
Q 010472 232 IVGFVGYPNVGKSSTINALVGQKRTGVTS--TPGKTK-HF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVLPIDR 307 (509)
Q Consensus 232 ~vglvG~nGaGKSTLln~L~G~~~~g~~~--~~G~t~-~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~~~~~ 307 (509)
+.+|+|+||+||||||.+|..... |... ..|... .. ........+.+..+.+-++++ +...
T Consensus 23 l~~i~G~NGsGKStll~ai~~~l~-~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~--------------~~~~ 87 (198)
T cd03276 23 VNFIVGNNGSGKSAILTALTIGLG-GKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN--------------PLCV 87 (198)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhc-CCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCC--------------cCCH
Confidence 678999999999999999874322 1111 111100 00 000011224444443333321 1100
Q ss_pred hhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHH----HHcCCce----eCCCCCHHHH-HHHH
Q 010472 308 MTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAY----CASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 308 ~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~AL----a~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
. ..+.+.+.+.. .. +....+..||+||+|| ++|++|+ +.+|.++ |++|+|...+ .+.+
T Consensus 88 ~-----~~~~~~~~l~~---~~-~~~~~~~~lS~G~k~r----~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~ 154 (198)
T cd03276 88 L-----SQDMARSFLTS---NK-AAVRDVKTLSGGERSF----STVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTD 154 (198)
T ss_pred H-----HHHHHHHHhcc---cc-ccCCcccccChhHHHH----HHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHH
Confidence 0 11223333332 22 4566788999999999 9999999 4799988 9999999999 8999
Q ss_pred HHHHhhc---CCccEEEcCCCCChhhccchhhHhh
Q 010472 379 ILKDFID---GKLPHFEMPPGMSHEEVGMEDTQAS 410 (509)
Q Consensus 379 lLkd~~~---gkl~~~~~pp~~~~~~~~~~~~~~~ 410 (509)
+|+.+.. +...++..+|.++....++ .+.++
T Consensus 155 ~l~~~~~~~~~~~~iii~th~~~~i~~~d-~v~~~ 188 (198)
T cd03276 155 LLVKEAKKQPGRQFIFITPQDISGLASSD-DVKVF 188 (198)
T ss_pred HHHHHHhcCCCcEEEEEECCccccccccc-ceeEE
Confidence 9988753 3456777779999888774 44443
No 408
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.18 E-value=9.7e-11 Score=127.31 Aligned_cols=151 Identities=17% Similarity=0.136 Sum_probs=98.0
Q ss_pred ccCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 225 NVAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 225 ~~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
-.+++|+.+.|.|+||||||||+++|+|+-+ .|.+.+|. ...+.|++|.+++... +-.+.++...
T Consensus 414 ~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~----------~~~~lflpQ~PY~p~G---tLre~l~YP~ 480 (604)
T COG4178 414 FEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA----------DSALLFLPQRPYLPQG---TLREALCYPN 480 (604)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC----------CCceEEecCCCCCCCc---cHHHHHhCCC
Confidence 3678999999999999999999999999987 55555552 2246677887765332 3344554332
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchhhHhhc--cCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-H
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIENVCKI--NLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-A 375 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~--~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~ 375 (509)
... ...+ +.+..+...+..-.|.+.+.. +=...||+|++|| +++||.|.++|+++ .|++||+... .
T Consensus 481 ~~~-~~~d--~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQR----lafARilL~kP~~v~LDEATsALDe~~e~~ 553 (604)
T COG4178 481 AAP-DFSD--AELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQR----LAFARLLLHKPKWVFLDEATSALDEETEDR 553 (604)
T ss_pred CCC-CCCh--HHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHH----HHHHHHHHcCCCEEEEecchhccChHHHHH
Confidence 211 1111 222223333332222221111 1123599999999 99999999999998 8999999999 8
Q ss_pred HHHHHHHhhcCCccEEEcCCC
Q 010472 376 ARIILKDFIDGKLPHFEMPPG 396 (509)
Q Consensus 376 ~~~lLkd~~~gkl~~~~~pp~ 396 (509)
+.++|++-.-+ +.+++.-|.
T Consensus 554 l~q~l~~~lp~-~tvISV~Hr 573 (604)
T COG4178 554 LYQLLKEELPD-ATVISVGHR 573 (604)
T ss_pred HHHHHHhhCCC-CEEEEeccc
Confidence 88888874433 344444444
No 409
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2.3e-11 Score=125.31 Aligned_cols=185 Identities=14% Similarity=0.111 Sum_probs=124.8
Q ss_pred ccCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 225 NVAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 225 ~~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
..++.|+++++||++|+||||+++.|...+. +|.+.++|..... ....+++.+++++|.-.+|.+ +.+.++..|
T Consensus 284 f~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFND---ti~yni~yg 360 (497)
T COG5265 284 FTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND---TIAYNIKYG 360 (497)
T ss_pred ccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhh---hHHHHHhcc
Confidence 4678999999999999999999999999887 8999999977433 223456678899988888644 455555554
Q ss_pred cCCcchhhhHHHH-----HHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHH
Q 010472 302 VLPIDRMTEHRQA-----VQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDE 372 (509)
Q Consensus 302 ~~~~~~~~~~~~~-----~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~ 372 (509)
--.. .-.+...+ +..+.+.+|. ++...... ..-.||||++|| ++|||++..+|.+| .|++||..
T Consensus 361 r~~a-t~eev~aaa~~aqi~~fi~~lP~-gy~t~Vge-rglklSggekqr----vaiar~ilk~p~il~~deatsaldt~ 433 (497)
T COG5265 361 RPDA-TAEEVGAAAEAAQIHDFIQSLPE-GYDTGVGE-RGLKLSGGEKQR----VAIARTILKNPPILILDEATSALDTH 433 (497)
T ss_pred Cccc-cHHHHHHHHHHhhhhHHHHhCch-hhhcccch-heeeccCchHHH----HHHHHHHhcCCCEEEEehhhhHhhhh
Confidence 3211 11111111 1111122221 11110111 122599999999 99999999999998 89999998
Q ss_pred HH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 373 TR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 373 ~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
+. ++..-|++...|++.++. -|-++.-. .+|.+.+++.|.|+|.+..
T Consensus 434 te~~iq~~l~~~~~~rttlvi-ahrlsti~-~adeiivl~~g~i~erg~h 481 (497)
T COG5265 434 TEQAIQAALREVSAGRTTLVI-AHRLSTII-DADEIIVLDNGRIVERGTH 481 (497)
T ss_pred HHHHHHHHHHHHhCCCeEEEE-eehhhhcc-CCceEEEeeCCEEEecCcH
Confidence 88 999999999988876543 23333222 2455667888899886654
No 410
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=6.7e-11 Score=121.84 Aligned_cols=155 Identities=12% Similarity=0.049 Sum_probs=102.2
Q ss_pred CCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccCCcch
Q 010472 228 PKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVLPIDR 307 (509)
Q Consensus 228 ~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~~~~~ 307 (509)
.-...++||||||+||||||..|.|.+.+..+.. +. ..+-.|+++||...---....+..+.+..++. +
T Consensus 611 DmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~----RK----nhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FN-l-- 679 (807)
T KOG0066|consen 611 DMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGEL----RK----NHRLRIGWFDQHANEALNGEETPVEYLQRKFN-L-- 679 (807)
T ss_pred cccceeEEECCCCccHHHHHHHHhcCCCCCcchh----hc----cceeeeechhhhhHHhhccccCHHHHHHHhcC-C--
Confidence 3345899999999999999999999876432221 11 11224677776433211121222222222221 1
Q ss_pred hhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHHHHHH
Q 010472 308 MTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARIILKD 382 (509)
Q Consensus 308 ~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~lLkd 382 (509)
+.+.+...++.++|...-..-....|||||+.| ++||...+..|.+| ||++||..+- ++-..|++
T Consensus 680 ------pyq~ARK~LG~fGL~sHAHTikikdLSGGQKaR----ValaeLal~~PDvlILDEPTNNLDIESIDALaEAIne 749 (807)
T KOG0066|consen 680 ------PYQEARKQLGTFGLASHAHTIKIKDLSGGQKAR----VALAELALGGPDVLILDEPTNNLDIESIDALAEAINE 749 (807)
T ss_pred ------ChHHHHHHhhhhhhhhccceEeeeecCCcchHH----HHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHh
Confidence 123344566777786533333466899999999 99999999999998 9999999999 99999999
Q ss_pred hhcCCccEEEcCCCCChhhccc
Q 010472 383 FIDGKLPHFEMPPGMSHEEVGM 404 (509)
Q Consensus 383 ~~~gkl~~~~~pp~~~~~~~~~ 404 (509)
|. |.++++++...+-...-|.
T Consensus 750 y~-GgVi~VsHDeRLi~eT~C~ 770 (807)
T KOG0066|consen 750 YN-GGVIMVSHDERLIVETDCN 770 (807)
T ss_pred cc-CcEEEEecccceeeecCce
Confidence 84 5566777766655555554
No 411
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.16 E-value=5e-11 Score=125.97 Aligned_cols=140 Identities=16% Similarity=0.153 Sum_probs=89.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
.+..+..+++|||||+||||||++++|.+. .|.+.-.-+.+ +.++.|.-..--.+..+..+.++- .+
T Consensus 412 gid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~----------~~~y~Qh~~e~ldl~~s~le~~~~-~~ 480 (614)
T KOG0927|consen 412 GIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNK----------LPRYNQHLAEQLDLDKSSLEFMMP-KF 480 (614)
T ss_pred ccCcccceeEecCCCCchhhhHHHHhhcccccccccccccccc----------chhhhhhhHhhcCcchhHHHHHHH-hc
Confidence 466788999999999999999999999886 34332211110 111111100000111122222221 11
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
+. ....+.+..++++++|...........||.||+.| +.+|+.+...|.+| ||+|||..+. ++.+
T Consensus 481 ~~------~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~r----VlFa~l~~kqP~lLlLDEPtnhLDi~tid~lae 550 (614)
T KOG0927|consen 481 PD------EKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRR----VLFARLAVKQPHLLLLDEPTNHLDIETIDALAE 550 (614)
T ss_pred cc------cchHHHHHHHHHHhCCCccccccchhhcccccchh----HHHHHHHhcCCcEEEecCCCcCCCchhHHHHHH
Confidence 11 11233444555566676434566678899999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhcC
Q 010472 379 ILKDFIDG 386 (509)
Q Consensus 379 lLkd~~~g 386 (509)
.|++|-.|
T Consensus 551 aiNe~~Gg 558 (614)
T KOG0927|consen 551 AINEFPGG 558 (614)
T ss_pred HHhccCCc
Confidence 99998544
No 412
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.12 E-value=9.1e-11 Score=140.81 Aligned_cols=98 Identities=10% Similarity=-0.049 Sum_probs=74.0
Q ss_pred HhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHH---HcCCce----eCCCCCHHHH-HHHHHHHHhhcCCccEE
Q 010472 320 NRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYC---ASRGYV----ASSGLPDETR-AARIILKDFIDGKLPHF 391 (509)
Q Consensus 320 ~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa---~~p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~ 391 (509)
+.+..++|........+..||+||+|| ++||+||+ .+|.++ ||+|||...+ .+..+|+.+++.+..++
T Consensus 791 ~~L~~vGL~~l~l~q~~~tLSGGE~QR----V~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVI 866 (1809)
T PRK00635 791 HALCSLGLDYLPLGRPLSSLSGGEIQR----LKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVV 866 (1809)
T ss_pred HHHHHcCCcchhhcCccccCCHHHHHH----HHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 344555665522466788999999999 99999998 588887 9999999999 99999999976555577
Q ss_pred EcCCCCChhhccchhhHhhc------ccccccCCCCc
Q 010472 392 EMPPGMSHEEVGMEDTQASS------LLELHESDASD 422 (509)
Q Consensus 392 ~~pp~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 422 (509)
...|++.... +++.+.++. +|.++..++.+
T Consensus 867 iIsHdl~~i~-~aDrVi~L~p~gg~~~G~iv~~Gtpe 902 (1809)
T PRK00635 867 IIEHNMHVVK-VADYVLELGPEGGNLGGYLLASCSPE 902 (1809)
T ss_pred EEeCCHHHHH-hCCEEEEEccCCCCCCCEEEEeCCHH
Confidence 8888888875 555666663 56665554443
No 413
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.11 E-value=4.9e-11 Score=118.22 Aligned_cols=74 Identities=3% Similarity=-0.075 Sum_probs=58.3
Q ss_pred CCCCCccccCCCchHHHHHHHHHHc----CCce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchh
Q 010472 336 PKPKPYESQSRPPLALELLRAYCAS----RGYV----ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMED 406 (509)
Q Consensus 336 ~~~LSgGq~QR~~~~~~La~ALa~~----p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~ 406 (509)
+..||+|++|| ++|+++++.. |.++ |++|||+..+ .+..+|+.+.+.+..++...|.....++|++.
T Consensus 153 ~~~LS~G~k~r----l~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i 228 (247)
T cd03275 153 MDNLSGGEKTM----AALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADAL 228 (247)
T ss_pred HHHcCHHHHHH----HHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeE
Confidence 47899999999 9999999875 7777 9999999999 89999999976445566666776666677766
Q ss_pred hHhhccc
Q 010472 407 TQASSLL 413 (509)
Q Consensus 407 ~~~~~~~ 413 (509)
..++.-+
T Consensus 229 ~~~~~~~ 235 (247)
T cd03275 229 VGVYRDQ 235 (247)
T ss_pred EEEEecC
Confidence 6554443
No 414
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.10 E-value=6.5e-11 Score=122.86 Aligned_cols=176 Identities=13% Similarity=0.066 Sum_probs=114.1
Q ss_pred ccCCCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCC-------------cccccc-eeeecCeEEEEeCCCcc--CC
Q 010472 225 NVAPKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPG-------------KTKHFQ-TLIISEKLVLCDCPGLV--FP 288 (509)
Q Consensus 225 ~~i~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G-------------~t~~~~-~~~~~~~i~l~d~pg~~--~p 288 (509)
+...+|.++||+|+||.||||.+++|+|.+.+.-+...+ +..+.- .......+..+..|.++ .|
T Consensus 95 P~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iP 174 (591)
T COG1245 95 PTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIP 174 (591)
T ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHH
Confidence 456789999999999999999999999988743333222 111100 00011122222222222 01
Q ss_pred C-CcccHHHHHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce---
Q 010472 289 S-FSISRYDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV--- 364 (509)
Q Consensus 289 ~-~~~~~~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL--- 364 (509)
. +..++.+++-. ........+.+++++|.. ..++....||||+.|| ++||.+++++..+.
T Consensus 175 k~~KG~v~elLk~-----------~de~g~~devve~l~L~n-vl~r~v~~LSGGELQr----~aIaa~l~rdADvY~FD 238 (591)
T COG1245 175 KVVKGKVGELLKK-----------VDERGKFDEVVERLGLEN-VLDRDVSELSGGELQR----VAIAAALLRDADVYFFD 238 (591)
T ss_pred HHhcchHHHHHHh-----------hhhcCcHHHHHHHhcchh-hhhhhhhhcCchHHHH----HHHHHHHhccCCEEEEc
Confidence 1 00111111100 000012233344445666 4456678899999999 99999999999987
Q ss_pred -eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccc
Q 010472 365 -ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELH 416 (509)
Q Consensus 365 -PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~ 416 (509)
|++-||...| .+..+|+++.+.+...+..-|++.--.|.++.+-+++|.--+
T Consensus 239 EpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG~pg~ 292 (591)
T COG1245 239 EPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYGEPGV 292 (591)
T ss_pred CCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEecCCcc
Confidence 9999999999 999999999886666777789998888988888888876653
No 415
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.10 E-value=7.9e-11 Score=120.35 Aligned_cols=179 Identities=16% Similarity=0.121 Sum_probs=111.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccccee-eecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTL-IISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~-~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++.+|+++-|+|.||||||||+..|+|+.. +|.+.++|+..+.... .++.-+.-+.+.-.+|+.+- |
T Consensus 345 ~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll---------~- 414 (546)
T COG4615 345 TIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL---------G- 414 (546)
T ss_pred EEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh---------C-
Confidence 578999999999999999999999999987 8999999988765432 12221222222222333221 0
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchhhH--hhcc--CCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIENV--CKIN--LPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~--~~~~--~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
.+.. ...+. +..++.++.+.+. ..+. .+..||.||++| ++++.|++.+++++ =.+..||.-|
T Consensus 415 --~e~~-as~q~---i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKR----lAll~AllEeR~Ilv~DEWAADQDPaFR 484 (546)
T COG4615 415 --PEGK-ASPQL---IEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKR----LALLLALLEERDILVLDEWAADQDPAFR 484 (546)
T ss_pred --CccC-CChHH---HHHHHHHHHHhhhhcccCCcccccccccchHHH----HHHHHHHHhhCCeEEeehhhccCChHHH
Confidence 0110 01122 2223322223221 1111 234699999999 99999999999998 2467888888
Q ss_pred -HH-HHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcccc
Q 010472 375 -AA-RIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEE 425 (509)
Q Consensus 375 -~~-~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (509)
.+ ..+|-.+++.+-+++..+|+ +.=-.|+|+..-++.|++++-++.+...
T Consensus 485 R~FY~~lLp~LK~qGKTI~aIsHD-d~YF~~ADrll~~~~G~~~e~tge~~~e 536 (546)
T COG4615 485 REFYQVLLPLLKEQGKTIFAISHD-DHYFIHADRLLEMRNGQLSELTGEERDE 536 (546)
T ss_pred HHHHHHHhHHHHHhCCeEEEEecC-chhhhhHHHHHHHhcCceeeccccccch
Confidence 55 45556676533344444444 1112367888889999999987765543
No 416
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.09 E-value=2.6e-10 Score=107.85 Aligned_cols=220 Identities=11% Similarity=0.050 Sum_probs=145.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCcce------EEeeCCccc-cc----ceeeecCeEEEEeCCCccCCCCcccH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKRTG------VTSTPGKTK-HF----QTLIISEKLVLCDCPGLVFPSFSISR 294 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~~g------~~~~~G~t~-~~----~~~~~~~~i~l~d~pg~~~p~~~~~~ 294 (509)
++..|++.|+||.+|+|||-+.++|+|..+.. ...+..... .. ....+...+.+++|.....-+.+.++
T Consensus 29 tlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~i 108 (330)
T COG4170 29 TLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERV 108 (330)
T ss_pred eeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHH
Confidence 46789999999999999999999999987622 112222111 00 11112344555555443322222222
Q ss_pred HHHHHhccCCcchh-----hhHHHHHHHHHHhCCccchhhH--hhccCCCCCCccccCCCchHHHHHHHHHHcCCce---
Q 010472 295 YDMVASGVLPIDRM-----TEHRQAVQVVANRVPRHVIENV--CKINLPKPKPYESQSRPPLALELLRAYCASRGYV--- 364 (509)
Q Consensus 295 ~e~v~~g~~~~~~~-----~~~~~~~~~i~~~l~~~~L~~~--~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL--- 364 (509)
-..+..++ |...+ ....-....+.+.+-++++.+. ....+|.+|..|+-|+ +.||.|+|.+|.+|
T Consensus 109 G~QlIq~I-P~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QK----VMIA~A~AnqPrLLIAD 183 (330)
T COG4170 109 GRQLIQNI-PAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQK----VMIAIALANQPRLLIAD 183 (330)
T ss_pred HHHHHhhC-ccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCccee----eeeehhhccCCceEecc
Confidence 22333222 11111 0001122334444445555431 2345688899999999 99999999999998
Q ss_pred -eCCCCCHHHH-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHh
Q 010472 365 -ASSGLPDETR-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVL 441 (509)
Q Consensus 365 -PtsGLD~~~r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (509)
||+.+++.++ .+..+|..+.+ ..+.++...|++..-..-++.+.+++-|..+++.+++..-+...+ |+..-++
T Consensus 184 EPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~~~PhH----PYTqALi 259 (330)
T COG4170 184 EPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTMPHH----PYTQALI 259 (330)
T ss_pred CCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccchhHHhcCCCC----chHHHHH
Confidence 9999999999 99999999876 577888888888876666677777888888999888777666554 8888899
Q ss_pred ccCCCcccccccc
Q 010472 442 DDLSSFDLANGLA 454 (509)
Q Consensus 442 ~~~~~~~~~~~~~ 454 (509)
.+++-|...-...
T Consensus 260 ~a~PDF~~~lp~K 272 (330)
T COG4170 260 RAIPDFGSALPHK 272 (330)
T ss_pred HhCccccccCcch
Confidence 9888887655443
No 417
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.08 E-value=3.1e-10 Score=119.29 Aligned_cols=190 Identities=14% Similarity=0.079 Sum_probs=139.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccc-c--cceeeecCeEEEEeC----CCccCCCCcccHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTK-H--FQTLIISEKLVLCDC----PGLVFPSFSISRYD 296 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~-~--~~~~~~~~~i~l~d~----pg~~~p~~~~~~~e 296 (509)
++..|+++||.|-.|-|-+.|+.+|+|+.+ .|.+.+.|... . .........+++++. .|++ +.+ +..+
T Consensus 280 ~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv-~~~--sl~e 356 (501)
T COG3845 280 EVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLV-LDL--SLAE 356 (501)
T ss_pred EEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccc-cCc--cHHH
Confidence 578999999999999999999999999975 89999999875 1 111122345666654 3554 444 5667
Q ss_pred HHHhccCCcc-----hhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCC
Q 010472 297 MVASGVLPID-----RMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASS 367 (509)
Q Consensus 297 ~v~~g~~~~~-----~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----Pts 367 (509)
|+..+.+... .+.+.........+.+..+++...-.......||||.+|+ +-++|-|..+|++| ||.
T Consensus 357 N~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK----~IlaREl~~~p~lLI~~qPTr 432 (501)
T COG3845 357 NLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQK----LILARELARRPDLLIAAQPTR 432 (501)
T ss_pred HhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceeh----hhhhhhhccCCCEEEEcCCCc
Confidence 7766655321 1122233334444444444443211123356799999999 99999999999998 999
Q ss_pred CCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 368 GLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 368 GLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
|||.-+. .+...|.+.++.+..++...-++++.-..++.++++..|+++...+.+
T Consensus 433 GLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~ 488 (501)
T COG3845 433 GLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPE 488 (501)
T ss_pred cccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccccc
Confidence 9999998 889999999888877777788889988999999999999998765554
No 418
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.08 E-value=6.2e-11 Score=136.36 Aligned_cols=99 Identities=8% Similarity=-0.014 Sum_probs=74.4
Q ss_pred hCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcC---Cce----eCCCCCHHHH-HHHHHHHHhhcCCccEEE
Q 010472 321 RVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASR---GYV----ASSGLPDETR-AARIILKDFIDGKLPHFE 392 (509)
Q Consensus 321 ~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p---~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~ 392 (509)
.+..++|........+..||+||+|| +.||++|+.+| .++ |++|||+..+ .+..+|+.+.+.+..++.
T Consensus 813 ~L~~vgL~~l~l~~~~~tLSgGEkQR----l~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIi 888 (943)
T PRK00349 813 TLVDVGLGYIKLGQPATTLSGGEAQR----VKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVV 888 (943)
T ss_pred HHHHCCCCcccccCCcccCCHHHHHH----HHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 33444554322355678899999999 99999999998 676 9999999999 999999999764456777
Q ss_pred cCCCCChhhccchhhHhh------cccccccCCCCccc
Q 010472 393 MPPGMSHEEVGMEDTQAS------SLLELHESDASDAE 424 (509)
Q Consensus 393 ~pp~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 424 (509)
..|++..... ++.+.++ .+|+++..++.+..
T Consensus 889 itH~~~~i~~-aD~ii~Lgp~~G~~~G~Iv~~Gt~~el 925 (943)
T PRK00349 889 IEHNLDVIKT-ADWIIDLGPEGGDGGGEIVATGTPEEV 925 (943)
T ss_pred EecCHHHHHh-CCEEEEecCCcCCCCCEEEEeCCHHHH
Confidence 7788777765 5566666 67888776555443
No 419
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.05 E-value=2.2e-10 Score=121.12 Aligned_cols=90 Identities=12% Similarity=-0.072 Sum_probs=67.4
Q ss_pred hhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccch
Q 010472 331 CKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGME 405 (509)
Q Consensus 331 ~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~ 405 (509)
...+....+|||++.| ++||++|..+|.+| ||++||..+. -+-..|..+..+.+++++++-+. -...|..
T Consensus 214 m~~k~~~~~SgGwrmR----~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDf-ln~vCT~ 288 (614)
T KOG0927|consen 214 MQDKKVKDLSGGWRMR----AALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDF-LNGVCTN 288 (614)
T ss_pred HHHHHhhccCchHHHH----HHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhh-hhhHhhh
Confidence 4556677899999999 99999999999998 9999999999 88899999887777777776653 3455665
Q ss_pred hhHhhcccccccCCCCcccc
Q 010472 406 DTQASSLLELHESDASDAEE 425 (509)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~ 425 (509)
++-+..+..+...++-|..-
T Consensus 289 Ii~l~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 289 IIHLDNKKLIYYEGNYDQYV 308 (614)
T ss_pred hheecccceeeecCCHHHHh
Confidence 55554444444444444433
No 420
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=3.4e-10 Score=119.15 Aligned_cols=165 Identities=15% Similarity=0.083 Sum_probs=95.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccH-HHHHHhccCC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISR-YDMVASGVLP 304 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~-~e~v~~g~~~ 304 (509)
.+..|-.+||||+||+||||||++|+.- .+...... +.+.=++++...----+.+. ...+....
T Consensus 102 ~L~~GrRYGLvGrNG~GKsTLLRaia~~----~v~~f~ve---------qE~~g~~t~~~~~~l~~D~~~~dfl~~e~-- 166 (582)
T KOG0062|consen 102 TLSRGRRYGLVGRNGIGKSTLLRAIANG----QVSGFHVE---------QEVRGDDTEALQSVLESDTERLDFLAEEK-- 166 (582)
T ss_pred eeecccccceeCCCCCcHHHHHHHHHhc----CcCccCch---------hheeccchHHHhhhhhccHHHHHHHHhhh--
Confidence 4567899999999999999999999972 22221111 01111122211100000111 11111100
Q ss_pred cchhhhHHHHHHHHHH-hCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 305 IDRMTEHRQAVQVVAN-RVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 305 ~~~~~~~~~~~~~i~~-~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
.+.... ....+.. .+.-+++......+...++|||-+-| ++|||||..+|++| ||+.||..+- -+-.
T Consensus 167 --~l~~~~-~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMr----laLARAlf~~pDlLLLDEPTNhLDv~av~WLe~ 239 (582)
T KOG0062|consen 167 --ELLAGL-TLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMR----LALARALFAKPDLLLLDEPTNHLDVVAVAWLEN 239 (582)
T ss_pred --hhhccc-hHHHHHHHHHHhCCCCHHHHhccccccCcchhhH----HHHHHHHhcCCCEEeecCCcccchhHHHHHHHH
Confidence 000000 1122222 44455666556677788999999999 99999999999998 9999999876 5556
Q ss_pred HHHHhhcCCccEEEcCCCCChhhccchhhHhhccccc
Q 010472 379 ILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLEL 415 (509)
Q Consensus 379 lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~ 415 (509)
.|+.|. +++++..|+-..-..+|..+.-+++.++
T Consensus 240 yL~t~~---~T~liVSHDr~FLn~V~tdIIH~~~~kL 273 (582)
T KOG0062|consen 240 YLQTWK---ITSLIVSHDRNFLNTVCTDIIHLENLKL 273 (582)
T ss_pred HHhhCC---ceEEEEeccHHHHHHHHHHHHHHhhhhh
Confidence 665554 5556666665544445555555555555
No 421
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.96 E-value=8.1e-10 Score=127.30 Aligned_cols=192 Identities=13% Similarity=0.126 Sum_probs=129.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-----ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHh
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-----TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVAS 300 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-----~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~ 300 (509)
-+++|+.+.++|+||+|||||+++|+|... .|.+.++|........ ...+.|+.+..+.+|.++..+...+..
T Consensus 137 ~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~--~~~~aY~~e~DvH~p~lTVreTldFa~ 214 (1391)
T KOG0065|consen 137 IIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP--KKTVAYNSEQDVHFPELTVRETLDFAA 214 (1391)
T ss_pred eEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc--CceEEeccccccccceeEEeehhhHHH
Confidence 467899999999999999999999999865 5678888876543322 567899999999999997655444443
Q ss_pred ccC-Ccchh----hhHHH--HHHHHHHhCCccch-hhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCC
Q 010472 301 GVL-PIDRM----TEHRQ--AVQVVANRVPRHVI-ENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSG 368 (509)
Q Consensus 301 g~~-~~~~~----~~~~~--~~~~i~~~l~~~~L-~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsG 368 (509)
.+. +..+. +.... ..+.+++.++.... .....+....-.||||+.| +.++.+++..+.++ +|.|
T Consensus 215 rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKR----vsi~E~~v~~~~~~~~De~t~G 290 (1391)
T KOG0065|consen 215 RCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKR----VSIGEMLVGPASILFWDEITRG 290 (1391)
T ss_pred hccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccce----eeeeeeeecCcceeeeeccccc
Confidence 332 21111 11111 23344444442111 1123445556699999999 99999999999988 9999
Q ss_pred CCHHHH-HHHHHHHHhhc--CCccEEEcCCCCChhhcc-chhhHhhcccccccCCCCccc
Q 010472 369 LPDETR-AARIILKDFID--GKLPHFEMPPGMSHEEVG-MEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 369 LD~~~r-~~~~lLkd~~~--gkl~~~~~pp~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 424 (509)
||..+. .+...|+.+.+ +.+.+++. ..-.++.|+ -|.+.++..|.++..++.+..
T Consensus 291 LDSsTal~iik~lr~~a~~~~~t~~vsi-~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~ 349 (1391)
T KOG0065|consen 291 LDSSTAFQIIKALRQLAHITGATALVSI-LQPSPEIYDLFDDVILLSEGYQIYQGPRDEV 349 (1391)
T ss_pred ccHHHHHHHHHHHHHHHhhhcceEEEEe-ccCChHHHHhhhheeeeeccceEEeccHHHH
Confidence 999999 99999988865 44443332 222334443 445555666777776665543
No 422
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.95 E-value=2.3e-10 Score=131.39 Aligned_cols=95 Identities=8% Similarity=-0.002 Sum_probs=72.0
Q ss_pred CCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHc---CCce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEc
Q 010472 322 VPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCAS---RGYV----ASSGLPDETR-AARIILKDFIDGKLPHFEM 393 (509)
Q Consensus 322 l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~---p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~ 393 (509)
+..++|......+....||+||+|| +.||++|+.+ |.++ |++|||+..+ .+..+|+.+.+.+.+++..
T Consensus 812 L~~~gL~~l~l~~~~~tLSgGe~QR----l~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi 887 (924)
T TIGR00630 812 LCDVGLGYIKLGQPATTLSGGEAQR----IKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVI 887 (924)
T ss_pred HHHcCCCchhhcCccccCCHHHHHH----HHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3334554322355678899999999 9999999974 7776 9999999999 9999999997655567777
Q ss_pred CCCCChhhccchhhHhh------cccccccCCCC
Q 010472 394 PPGMSHEEVGMEDTQAS------SLLELHESDAS 421 (509)
Q Consensus 394 pp~~~~~~~~~~~~~~~------~~~~~~~~~~~ 421 (509)
.|++..... ++.+.++ .+|+++..++.
T Consensus 888 ~H~~~~i~~-aD~ii~Lgp~~G~~gG~iv~~G~~ 920 (924)
T TIGR00630 888 EHNLDVIKT-ADYIIDLGPEGGDGGGTIVASGTP 920 (924)
T ss_pred eCCHHHHHh-CCEEEEecCCccCCCCEEEEeCCH
Confidence 788777765 5566666 68888765543
No 423
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.93 E-value=2.8e-09 Score=98.47 Aligned_cols=62 Identities=31% Similarity=0.377 Sum_probs=40.8
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeC-C----cccccceeeecCeEEEEeCCCccCCCCc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTP-G----KTKHFQTLIISEKLVLCDCPGLVFPSFS 291 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~-G----~t~~~~~~~~~~~i~l~d~pg~~~p~~~ 291 (509)
+.+++|+|++|||||||+|.|.+... .+.++-. + +|.+.+...+.....++|+||+--..+.
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~~l~ 103 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRSFGLW 103 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSEEEECSHHHHT--GC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCccccc
Confidence 47899999999999999999999755 3333221 2 4455555666678899999998755553
No 424
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.83 E-value=2.2e-08 Score=94.77 Aligned_cols=176 Identities=16% Similarity=0.074 Sum_probs=113.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccc-ccceeeecCeEEEE-----eCCCccC--C-CCcccH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTK-HFQTLIISEKLVLC-----DCPGLVF--P-SFSISR 294 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~-~~~~~~~~~~i~l~-----d~pg~~~--p-~~~~~~ 294 (509)
.++.|..+.+||.||+||||||++|+|..- .|.+.+.|..- +-....-...+.|+ .++++-- | ....+.
T Consensus 36 dlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sa 115 (291)
T KOG2355|consen 36 DLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISA 115 (291)
T ss_pred ccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccccccccccccccccccH
Confidence 578899999999999999999999999865 67777777542 11111111123332 2222211 1 111122
Q ss_pred HHHHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 295 YDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 295 ~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
. -+++|+-..+ + +..+.+...++ +.-.+ ..+..|.||++| ++||..|.+--++| -|-.||
T Consensus 116 e-~mifgV~g~d----p-~Rre~LI~iLD---Idl~W---RmHkvSDGqrRR----VQicMGLL~PfkVLLLDEVTVDLD 179 (291)
T KOG2355|consen 116 E-HMIFGVGGDD----P-ERREKLIDILD---IDLRW---RMHKVSDGQRRR----VQICMGLLKPFKVLLLDEVTVDLD 179 (291)
T ss_pred H-HHHhhccCCC----h-hHhhhhhhhee---ccceE---EEeeccccchhh----hHHHHhcccceeEEEeeeeEeehH
Confidence 2 3334433221 1 23344444443 22112 234689999999 99999999888877 688999
Q ss_pred HHHH-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhccccccc
Q 010472 371 DETR-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHE 417 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~ 417 (509)
..+| .+.++|+.-.+ .+..++..+|-++--+.-.-..+.+..|+|+.
T Consensus 180 VlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 180 VLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred HHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence 9999 89999988655 45667777787777777777777788888876
No 425
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.81 E-value=2.1e-08 Score=107.20 Aligned_cols=161 Identities=13% Similarity=0.078 Sum_probs=99.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
.++.|..+.|.||||+|||||+++|.|+-+ .|.+..+.... ...+.|++|.+++.- .+-.+.++...-
T Consensus 457 ~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~-------~~~lfflPQrPYmt~---GTLRdQvIYP~~ 526 (659)
T KOG0060|consen 457 EVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG-------PKDLFFLPQRPYMTL---GTLRDQVIYPLK 526 (659)
T ss_pred EecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC-------CCceEEecCCCCccc---cchhheeeccCc
Confidence 578999999999999999999999999977 56666554321 134666666544311 122333333211
Q ss_pred Ccchhhh--HHHHHHHHHHhCCccchhhHhh-------ccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 304 PIDRMTE--HRQAVQVVANRVPRHVIENVCK-------INLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 304 ~~~~~~~--~~~~~~~i~~~l~~~~L~~~~~-------~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
..+.... ..+.+..+.+.+....|.++.. ..-.+.||+|++|| +++||.+.++|++- -|++++
T Consensus 527 ~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQR----La~ARLfy~kPk~AiLDE~TSAv~ 602 (659)
T KOG0060|consen 527 AEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQR----LAFARLFYHKPKFAILDECTSAVT 602 (659)
T ss_pred cccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHH----HHHHHHHhcCCceEEeechhhhcc
Confidence 1111000 0122223333332222222111 11134699999999 99999999999985 789998
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhcc
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVG 403 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~ 403 (509)
.... ++..+++. -++++++.-|-.+-..+.
T Consensus 603 ~dvE~~~Yr~~r~---~giT~iSVgHRkSL~kfH 633 (659)
T KOG0060|consen 603 EDVEGALYRKCRE---MGITFISVGHRKSLWKFH 633 (659)
T ss_pred HHHHHHHHHHHHH---cCCeEEEeccHHHHHhhh
Confidence 8777 76665554 578999988876655553
No 426
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.78 E-value=6e-09 Score=101.16 Aligned_cols=78 Identities=10% Similarity=-0.013 Sum_probs=52.6
Q ss_pred hccCCCCCCccccCCCchHHHHHHH----HHHcCCce----eCCCCCHHHH-HHHHHHHHhhc--CCccEEEcCCCCC-h
Q 010472 332 KINLPKPKPYESQSRPPLALELLRA----YCASRGYV----ASSGLPDETR-AARIILKDFID--GKLPHFEMPPGMS-H 399 (509)
Q Consensus 332 ~~~~~~~LSgGq~QR~~~~~~La~A----La~~p~lL----PtsGLD~~~r-~~~~lLkd~~~--gkl~~~~~pp~~~-~ 399 (509)
....+..||+||+|+ +.++.+ ++.+|.++ |++|+|+..+ .++.+|..+.. |...++..+|.+. .
T Consensus 120 ~~~~~~~LS~G~~q~----~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~ 195 (213)
T cd03277 120 QELDPHHQSGGERSV----STMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPG 195 (213)
T ss_pred cccchhhccccHHHH----HHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccC
Confidence 344577899999998 665544 45788887 9999999999 99999998864 4454555555543 3
Q ss_pred hhccch-hhHhhccc
Q 010472 400 EEVGME-DTQASSLL 413 (509)
Q Consensus 400 ~~~~~~-~~~~~~~~ 413 (509)
.++|++ .+.+++.|
T Consensus 196 ~~~~~~~~v~~l~~g 210 (213)
T cd03277 196 LNYHEKMTVLCVYNG 210 (213)
T ss_pred CcccCceEEEEEecC
Confidence 334432 34444443
No 427
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.75 E-value=1.9e-09 Score=103.46 Aligned_cols=76 Identities=9% Similarity=0.010 Sum_probs=53.0
Q ss_pred CCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHH-HHHHHhhcCCccEEEcCCCCChhhccchhhHh
Q 010472 336 PKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AAR-IILKDFIDGKLPHFEMPPGMSHEEVGMEDTQA 409 (509)
Q Consensus 336 ~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~-~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~ 409 (509)
...+|+|++|+ ..+++++ .+|.++ |++|+|+..+ .+. .+++.+.+.+..++..+|...-.++|+ .+..
T Consensus 89 ~s~fs~g~~~~----~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d-~~~~ 162 (200)
T cd03280 89 LSTFSSHMKNI----ARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAY-KREG 162 (200)
T ss_pred cchHHHHHHHH----HHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHh-cCCC
Confidence 34678899888 8888764 678876 9999999998 664 578888765566667777644444444 4455
Q ss_pred hccccccc
Q 010472 410 SSLLELHE 417 (509)
Q Consensus 410 ~~~~~~~~ 417 (509)
++.|.+..
T Consensus 163 l~~g~l~~ 170 (200)
T cd03280 163 VENASMEF 170 (200)
T ss_pred eEEEEEEE
Confidence 55566643
No 428
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.71 E-value=2.1e-08 Score=94.58 Aligned_cols=66 Identities=9% Similarity=0.005 Sum_probs=51.2
Q ss_pred CCccccCCCchHHHHHHHHH----HcCCce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhH
Q 010472 339 KPYESQSRPPLALELLRAYC----ASRGYV----ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQ 408 (509)
Q Consensus 339 LSgGq~QR~~~~~~La~ALa----~~p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~ 408 (509)
||+|++|| +.|+++++ .+|.++ |++++|+..+ .+..+|..+.+.+..++..+|.......+++...
T Consensus 95 LS~Ge~~r----~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~ 169 (178)
T cd03239 95 LSGGEKSL----SALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIG 169 (178)
T ss_pred CCHHHHHH----HHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEE
Confidence 89999999 99999997 478877 9999999999 8889999886654556666666655555444433
No 429
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.70 E-value=1.7e-08 Score=106.66 Aligned_cols=147 Identities=16% Similarity=0.168 Sum_probs=86.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCc----------cCCCCccc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGL----------VFPSFSIS 293 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~----------~~p~~~~~ 293 (509)
.+.+|.-+.|+||||||||||+++|.|+-+ .|...+|--+ .+.|++|-.+ ++|+ +
T Consensus 504 ~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~----------~mFYIPQRPYms~gtlRDQIIYPd---S 570 (728)
T KOG0064|consen 504 QIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPN----------NIFYIPQRPYMSGGTLRDQIIYPD---S 570 (728)
T ss_pred EecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCc----------ceEeccCCCccCcCcccceeecCC---c
Confidence 578899999999999999999999999976 5655555322 2445555333 2332 2
Q ss_pred HHHHHHhccCCcchhhhHHHHHHHHHHhCC------cc-chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce--
Q 010472 294 RYDMVASGVLPIDRMTEHRQAVQVVANRVP------RH-VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV-- 364 (509)
Q Consensus 294 ~~e~v~~g~~~~~~~~~~~~~~~~i~~~l~------~~-~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL-- 364 (509)
..++.-.|... .....+...+. +. +++. ..+ --+-||||++|| +.+||.+-++|++-
T Consensus 571 ~e~~~~kg~~d--------~dL~~iL~~v~L~~i~qr~~g~da-~~d-Wkd~LsgGekQR----~~mARm~yHrPkyalL 636 (728)
T KOG0064|consen 571 SEQMKRKGYTD--------QDLEAILDIVHLEHILQREGGWDA-VRD-WKDVLSGGEKQR----MGMARMFYHRPKYALL 636 (728)
T ss_pred HHHHHhcCCCH--------HHHHHHHHHhhHHHHHHhccChhh-hcc-HHhhccchHHHH----HHHHHHHhcCcchhhh
Confidence 22222222111 11111222111 11 1111 111 123599999999 99999999999985
Q ss_pred --eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhc
Q 010472 365 --ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEV 402 (509)
Q Consensus 365 --PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~ 402 (509)
-|+++..... .+.+..+++ ++.+++.+|--+-=.|
T Consensus 637 DEcTsAvsidvE~~i~~~ak~~---gi~llsithrpslwk~ 674 (728)
T KOG0064|consen 637 DECTSAVSIDVEGKIFQAAKDA---GISLLSITHRPSLWKY 674 (728)
T ss_pred hhhhcccccchHHHHHHHHHhc---CceEEEeecCccHHHH
Confidence 5676654444 555555543 6667766666544444
No 430
>COG1159 Era GTPase [General function prediction only]
Probab=98.67 E-value=2.5e-08 Score=99.41 Aligned_cols=60 Identities=38% Similarity=0.615 Sum_probs=50.9
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee---cCeEEEEeCCCccCCCC
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII---SEKLVLCDCPGLVFPSF 290 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~---~~~i~l~d~pg~~~p~~ 290 (509)
.++||||.||||||||+|.|+|...+-++..+.+|++.-.... ..++.|+||||+..|.-
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~ 69 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKH 69 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcch
Confidence 4799999999999999999999988889999999987543222 45799999999998864
No 431
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.67 E-value=4e-08 Score=92.91 Aligned_cols=154 Identities=21% Similarity=0.276 Sum_probs=81.4
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCC-cceEEeeCCcccccceeeecCeEEEEeCCCccCCCCccc---HHHH----HHh-
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQK-RTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSIS---RYDM----VAS- 300 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~-~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~---~~e~----v~~- 300 (509)
.-.++|+|.+|||||||+|.|++.. .......+|.|...........+.++|+||+........ .... .+.
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 103 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRT 103 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHh
Confidence 4579999999999999999999864 233444566665544333445789999999654322111 0000 111
Q ss_pred -----ccCC-cchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHH-cCCceeCCCCCHHH
Q 010472 301 -----GVLP-IDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCA-SRGYVASSGLPDET 373 (509)
Q Consensus 301 -----g~~~-~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~-~p~lLPtsGLD~~~ 373 (509)
+++. .+...........+...+...++.-.+.....+.++++++++ ....+.+.+.. ...++|+++++...
T Consensus 104 ~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~--~~~~i~~~l~~~~~~~~~~Sa~~~~g 181 (196)
T PRK00454 104 RENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKK--QLKKVRKALKFGDDEVILFSSLKKQG 181 (196)
T ss_pred CccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHH--HHHHHHHHHHhcCCceEEEEcCCCCC
Confidence 1110 010000001111122222212221112234455567777665 11224444433 46677999999887
Q ss_pred H-HHHHHHHHhhc
Q 010472 374 R-AARIILKDFID 385 (509)
Q Consensus 374 r-~~~~lLkd~~~ 385 (509)
. .+...|.++..
T Consensus 182 i~~l~~~i~~~~~ 194 (196)
T PRK00454 182 IDELRAAIAKWLA 194 (196)
T ss_pred HHHHHHHHHHHhc
Confidence 7 88888877643
No 432
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.65 E-value=5.2e-08 Score=90.36 Aligned_cols=63 Identities=10% Similarity=-0.042 Sum_probs=50.1
Q ss_pred CCccccCCCchHHHHHHHHHH----cCCce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccch
Q 010472 339 KPYESQSRPPLALELLRAYCA----SRGYV----ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGME 405 (509)
Q Consensus 339 LSgGq~QR~~~~~~La~ALa~----~p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~ 405 (509)
+|+|++++ +.|+++|+. +|.++ |++|+|+..+ .+...|.++...+..++..+|+....+++++
T Consensus 78 lS~G~~~~----~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~ 149 (162)
T cd03227 78 LSGGEKEL----SALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADK 149 (162)
T ss_pred ccccHHHH----HHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhh
Confidence 89999999 999999987 56776 9999999999 8888888875445566667777766666543
No 433
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=5.5e-08 Score=102.78 Aligned_cols=146 Identities=13% Similarity=0.133 Sum_probs=96.2
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccCC
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVLP 304 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~~ 304 (509)
+..-..++++|+||+||||+++++.|... .|.+.+.+ +..+.+..|.-.-+-+......+. +...+|
T Consensus 387 ~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~----------r~ri~~f~Qhhvd~l~~~v~~vd~-~~~~~p 455 (582)
T KOG0062|consen 387 RESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP----------RLRIKYFAQHHVDFLDKNVNAVDF-MEKSFP 455 (582)
T ss_pred cchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc----------cceecchhHhhhhHHHHHhHHHHH-HHHhCC
Confidence 34456789999999999999999999654 34443322 223444444332222222222222 222333
Q ss_pred cchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHHH
Q 010472 305 IDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARII 379 (509)
Q Consensus 305 ~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~l 379 (509)
.. ..+.+...+..+||...+.......|||||+.| +.||.....+|.+| ||+.||-.+- ++..-
T Consensus 456 G~-------~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsr----vafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~A 524 (582)
T KOG0062|consen 456 GK-------TEEEIRRHLGSFGLSGELALQSIASLSGGQKSR----VAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKA 524 (582)
T ss_pred CC-------CHHHHHHHHHhcCCCchhhhccccccCCcchhH----HHHHHHhcCCCcEEEecCCCccccHHHHHHHHHH
Confidence 21 122344556666776545555577899999999 99999999999998 9999999998 98899
Q ss_pred HHHhhcCCccEEEcCC
Q 010472 380 LKDFIDGKLPHFEMPP 395 (509)
Q Consensus 380 Lkd~~~gkl~~~~~pp 395 (509)
|++|. |+++++++.-
T Consensus 525 l~~F~-GGVv~VSHd~ 539 (582)
T KOG0062|consen 525 LKNFN-GGVVLVSHDE 539 (582)
T ss_pred HHhcC-CcEEEEECcH
Confidence 98884 5556666543
No 434
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.62 E-value=5.9e-08 Score=89.46 Aligned_cols=55 Identities=40% Similarity=0.584 Sum_probs=42.0
Q ss_pred EEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee---cCeEEEEeCCCccC
Q 010472 232 IVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII---SEKLVLCDCPGLVF 287 (509)
Q Consensus 232 ~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~---~~~i~l~d~pg~~~ 287 (509)
.++++|.||||||||||+|+|.. ..++.+||+|.......+ ...+.++|.||+.-
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ys 59 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYS 59 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCccc
Confidence 58999999999999999999987 668999999987644332 35789999999753
No 435
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.58 E-value=8.3e-08 Score=99.09 Aligned_cols=145 Identities=12% Similarity=0.173 Sum_probs=91.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc----------ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR----------TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~----------~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
.+++|++++|+|++|+||||+|++|+|... +|.+.++-.|. -.--||..-|.|..
T Consensus 405 ~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~------------~a~iPge~Ep~f~~--- 469 (593)
T COG2401 405 EIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV------------SALIPGEYEPEFGE--- 469 (593)
T ss_pred EecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch------------hhccCcccccccCc---
Confidence 578999999999999999999999999753 34444443321 11225666666641
Q ss_pred HHHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhh-ccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 296 DMVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCK-INLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 296 e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~-~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
..++.-+.. .........+.+++.++.+.+. -..+..||.||+.| ..||.+++..|+++ -.+.||
T Consensus 470 ~tilehl~s------~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR----~KLAkllaerpn~~~iDEF~AhLD 539 (593)
T COG2401 470 VTILEHLRS------KTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKER----AKLAKLLAERPNVLLIDEFAAHLD 539 (593)
T ss_pred hhHHHHHhh------ccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHH----HHHHHHHhcCCCcEEhhhhhhhcC
Confidence 112211111 1111222344455555654333 34567899999999 99999999999998 457889
Q ss_pred HHHH-HHHHHHHHhh-cCCccEEEcCC
Q 010472 371 DETR-AARIILKDFI-DGKLPHFEMPP 395 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~-~gkl~~~~~pp 395 (509)
+.+. .+..-|..+. +-+++.+..+|
T Consensus 540 ~~TA~rVArkiselaRe~giTlivvTh 566 (593)
T COG2401 540 ELTAVRVARKISELAREAGITLIVVTH 566 (593)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 9887 6666666665 33444443333
No 436
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.57 E-value=7.5e-08 Score=99.67 Aligned_cols=161 Identities=16% Similarity=0.101 Sum_probs=106.6
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCcce-EEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccCCcch
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKRTG-VTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVLPIDR 307 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~~g-~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~~~~~ 307 (509)
..+++..+|.||.|||||+++|+|.++.. ...+|-. ++.|-+| -+-|.+..++..++..-+.
T Consensus 366 dSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~l-----------nVSykpq--kispK~~~tvR~ll~~kIr---- 428 (592)
T KOG0063|consen 366 DSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVL-----------NVSYKPQ--KISPKREGTVRQLLHTKIR---- 428 (592)
T ss_pred CceeEEEEccCCcchhHHHHHHhcCCCCCccCccccc-----------ceecccc--ccCccccchHHHHHHHHhH----
Confidence 45788899999999999999999976622 1222211 1222222 3446666666554433221
Q ss_pred hhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHHHHHH
Q 010472 308 MTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARIILKD 382 (509)
Q Consensus 308 ~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~lLkd 382 (509)
+....-+.+.+.+..+.+++ ..+.....||||++|| ++++.+|....++. |.+-||.+.| .+-..++.
T Consensus 429 --~ay~~pqF~~dvmkpL~ie~-i~dqevq~lSggelQR----val~KOGGKpAdvYliDEpsAylDSeQRi~AskvikR 501 (592)
T KOG0063|consen 429 --DAYMHPQFVNDVMKPLQIEN-IIDQEVQGLSGGELQR----VALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKR 501 (592)
T ss_pred --hhhcCHHHHHhhhhhhhHHH-HHhHHhhcCCchhhHH----HHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHH
Confidence 11111223333344444555 3345567899999999 99999998888876 9999999999 66666666
Q ss_pred h-hcCCccEEEcCCCCChhhccchhhHhhccc
Q 010472 383 F-IDGKLPHFEMPPGMSHEEVGMEDTQASSLL 413 (509)
Q Consensus 383 ~-~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~ 413 (509)
+ .+.+..-+..-|++--+.|.++.+++++|.
T Consensus 502 filhakktafvVEhdfImaTYladrvivf~G~ 533 (592)
T KOG0063|consen 502 FILHAKKTAFVVEHDFIMATYLADRVIVFEGQ 533 (592)
T ss_pred HHHhccchhhhhhhHHHHHHhhcceeEEEecC
Confidence 5 456666677788888888988888876654
No 437
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.56 E-value=8.5e-08 Score=90.85 Aligned_cols=62 Identities=37% Similarity=0.562 Sum_probs=53.6
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFS 291 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~ 291 (509)
+.-++++|.+|||||||||+|+|... +-++..||.|....-..+...+.++|-||+=|-..+
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~ 86 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVP 86 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCC
Confidence 34578999999999999999999876 888999999988777777777999999999887654
No 438
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.53 E-value=1.2e-07 Score=91.10 Aligned_cols=45 Identities=13% Similarity=0.046 Sum_probs=34.8
Q ss_pred HcCCce----eCCCCCHHHH-HH-HHHHHHhhcCCccEEEcCCCCChhhcc
Q 010472 359 ASRGYV----ASSGLPDETR-AA-RIILKDFIDGKLPHFEMPPGMSHEEVG 403 (509)
Q Consensus 359 ~~p~lL----PtsGLD~~~r-~~-~~lLkd~~~gkl~~~~~pp~~~~~~~~ 403 (509)
.+|.++ |++|+|+..+ .+ ..+++.+.+.+..++..+|++.....+
T Consensus 104 ~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 104 GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence 367776 9999999988 55 457888877677788888887776665
No 439
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.49 E-value=4.7e-07 Score=95.35 Aligned_cols=63 Identities=37% Similarity=0.518 Sum_probs=53.7
Q ss_pred CccCCCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee--c-CeEEEEeCCCcc
Q 010472 224 GNVAPKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII--S-EKLVLCDCPGLV 286 (509)
Q Consensus 224 ~~~i~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~--~-~~i~l~d~pg~~ 286 (509)
+.-+..|..++|+|+||||||||||+|++..++-+..++|+|++.-...+ . -.+.++||.|+.
T Consensus 211 g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiR 276 (454)
T COG0486 211 GKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIR 276 (454)
T ss_pred hhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcc
Confidence 34467899999999999999999999999999999999999998754332 2 357899999998
No 440
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.48 E-value=8.3e-08 Score=96.80 Aligned_cols=72 Identities=14% Similarity=0.013 Sum_probs=54.8
Q ss_pred CCCccccCCCchHHHHHHHHHH----cCCce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhH
Q 010472 338 PKPYESQSRPPLALELLRAYCA----SRGYV----ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQ 408 (509)
Q Consensus 338 ~LSgGq~QR~~~~~~La~ALa~----~p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~ 408 (509)
.||+|++|| +.|+++++. .|+++ |+++||+..+ .+..+|+.+..+ ..++...|+.....+|++...
T Consensus 170 ~lS~G~~~r----~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~-~tii~isH~~~~~~~~d~~~~ 244 (276)
T cd03241 170 IASGGELSR----LMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRS-HQVLCITHLPQVAAMADNHFL 244 (276)
T ss_pred hcChhHHHH----HHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCC-CEEEEEechHHHHHhcCcEEE
Confidence 489999999 999987654 88887 9999999999 999999998765 455666666555666666655
Q ss_pred hhcccc
Q 010472 409 ASSLLE 414 (509)
Q Consensus 409 ~~~~~~ 414 (509)
+..++.
T Consensus 245 l~~~~~ 250 (276)
T cd03241 245 VEKEVE 250 (276)
T ss_pred EEEecC
Confidence 544443
No 441
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.47 E-value=2.6e-07 Score=80.26 Aligned_cols=56 Identities=41% Similarity=0.596 Sum_probs=43.2
Q ss_pred EEEEecCCCCHhHHHHHHhcCCcceEEeeCCccccccee--ee-cCeEEEEeCCCccCC
Q 010472 233 VGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTL--II-SEKLVLCDCPGLVFP 288 (509)
Q Consensus 233 vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~--~~-~~~i~l~d~pg~~~p 288 (509)
++|+|++|||||||+|.|+|.....+...+++|...... .. ...+.++|+||+..+
T Consensus 2 V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~ 60 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDG 60 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSS
T ss_pred EEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCccc
Confidence 789999999999999999996556667778888766322 22 335789999998644
No 442
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.40 E-value=1.7e-07 Score=85.02 Aligned_cols=56 Identities=41% Similarity=0.675 Sum_probs=38.7
Q ss_pred EEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCcccccceeeecCeEEEEeCCCccCC
Q 010472 233 VGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFP 288 (509)
Q Consensus 233 vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p 288 (509)
++|+|.+|||||||+|.|++... .-.....|.|...........+.++|+||+.+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~ 58 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYA 58 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCcccc
Confidence 68999999999999999994322 223334455544433444557889999997654
No 443
>PRK11058 GTPase HflX; Provisional
Probab=98.37 E-value=1.1e-06 Score=93.85 Aligned_cols=55 Identities=25% Similarity=0.316 Sum_probs=41.1
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceee--ec--CeEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLI--IS--EKLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~--~~--~~i~l~d~pg~~ 286 (509)
-.++|||++|||||||||.|+|.... +...+|+|++..... +. ..+.++|++|+.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~ 256 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFI 256 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCccc
Confidence 36999999999999999999986543 556677776654322 22 257899999984
No 444
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.36 E-value=5.1e-07 Score=86.69 Aligned_cols=55 Identities=11% Similarity=0.116 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCCce----eCCCCCHHHH-HH-HHHHHHhhcCCccEEEcCCCCChhhccch
Q 010472 351 LELLRAYCASRGYV----ASSGLPDETR-AA-RIILKDFIDGKLPHFEMPPGMSHEEVGME 405 (509)
Q Consensus 351 ~~La~ALa~~p~lL----PtsGLD~~~r-~~-~~lLkd~~~gkl~~~~~pp~~~~~~~~~~ 405 (509)
+..+.+++.+|.++ |++|+|+..+ .+ ..+++.+.+.+..++..+|+......++.
T Consensus 99 l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~ 159 (202)
T cd03243 99 LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQ 159 (202)
T ss_pred HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhc
Confidence 44555667788887 9999999887 55 45677777666677778888777777664
No 445
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.30 E-value=2.7e-06 Score=88.77 Aligned_cols=56 Identities=30% Similarity=0.364 Sum_probs=41.4
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCccccccee--ee--cCeEEEEeCCCcc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTL--II--SEKLVLCDCPGLV 286 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~--~~--~~~i~l~d~pg~~ 286 (509)
+..++|+|++|||||||||+|+|.. .-+...++.|.+.... .+ ...+.++||+|+.
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~ 248 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFI 248 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCccc
Confidence 4689999999999999999999964 3334556767655432 22 2368899999984
No 446
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.28 E-value=1.5e-06 Score=96.43 Aligned_cols=114 Identities=10% Similarity=0.007 Sum_probs=82.4
Q ss_pred ccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcC---Cc-e---eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCC
Q 010472 324 RHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASR---GY-V---ASSGLPDETR-AARIILKDFIDGKLPHFEMPP 395 (509)
Q Consensus 324 ~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p---~l-L---PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp 395 (509)
.++|...-.-+...+||||+.|| +.||.-|..+. -+ + ||.||-...- .+..+|..+.+.+=.++..-|
T Consensus 808 dVGLgYi~LGQpatTLSGGEaQR----vKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEH 883 (935)
T COG0178 808 DVGLGYIKLGQPATTLSGGEAQR----VKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEH 883 (935)
T ss_pred HcCcceEecCCccccccchHHHH----HHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 34554422344566899999999 99999998876 22 2 9999987777 899999999886666777788
Q ss_pred CCChhhccchhhHh-----hcccccccCCCCccccCcCCCCCCCccHHHHhc
Q 010472 396 GMSHEEVGMEDTQA-----SSLLELHESDASDAEEVPAHGDRTTPVLEHVLD 442 (509)
Q Consensus 396 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (509)
+++--..+|-.+.+ ..||.|++.+..+..++.. .....+.++.++.
T Consensus 884 NLdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~-~S~Tg~yLk~~L~ 934 (935)
T COG0178 884 NLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVK-ASYTGKYLKKYLK 934 (935)
T ss_pred ccceEeecCEEEEcCCCCCCCCceEEEecCHHHHHhCc-cchhHHHHHHHhc
Confidence 88877666555442 6778888877777776644 5566666666553
No 447
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.22 E-value=8.1e-07 Score=107.53 Aligned_cols=107 Identities=4% Similarity=-0.077 Sum_probs=74.2
Q ss_pred HHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHc---CCce----eCCCCCHHHH-HHHHHHHHhhcCCc
Q 010472 317 VVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCAS---RGYV----ASSGLPDETR-AARIILKDFIDGKL 388 (509)
Q Consensus 317 ~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~---p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl 388 (509)
..++.+..++|..+-.-+...+||||+.|| +.||..|... +.++ ||.||++... .+..+|+.+.+.+-
T Consensus 1678 ~~L~~L~~vGLgYl~LGq~~~tLSGGE~qR----ikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~ 1753 (1809)
T PRK00635 1678 KPLQALIDNGLGYLPLGQNLSSLSLSEKIA----IKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGH 1753 (1809)
T ss_pred HHHHHHHHcCCCeeeCCCcCCccCchHHHH----HHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 334445556665533345566899999999 9999999865 3333 9999999998 99999999987555
Q ss_pred cEEEcCCCCChhhccchhhH-----hhcccccccCCCCccccCc
Q 010472 389 PHFEMPPGMSHEEVGMEDTQ-----ASSLLELHESDASDAEEVP 427 (509)
Q Consensus 389 ~~~~~pp~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 427 (509)
.++..-|+++--..+|-.+. -..||.|+..++.+.....
T Consensus 1754 tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~ 1797 (1809)
T PRK00635 1754 SVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISAS 1797 (1809)
T ss_pred eEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhC
Confidence 55555666555555444433 3677888777766666554
No 448
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.21 E-value=1.7e-06 Score=91.04 Aligned_cols=57 Identities=37% Similarity=0.501 Sum_probs=48.2
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCccccccee---eecCeEEEEeCCCccC
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTL---IISEKLVLCDCPGLVF 287 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~---~~~~~i~l~d~pg~~~ 287 (509)
-+++|||.||||||||+|.|+|...+-+..+||+|++.... .....+.++||.|+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~ 63 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDD 63 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCc
Confidence 47999999999999999999999889999999999875322 2345699999999974
No 449
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.18 E-value=2e-05 Score=70.93 Aligned_cols=75 Identities=28% Similarity=0.294 Sum_probs=56.1
Q ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCC-eEEEeeh
Q 010472 71 MWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDI-LFVFWSA 149 (509)
Q Consensus 71 ~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~gi-~~if~Sa 149 (509)
+|++....+..+|++++|+|++++.......+..++.. .++|+++|+||+|+.+.... ...+...+. .++++|+
T Consensus 66 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~Sa 140 (157)
T cd01894 66 IREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRK--SKKPVILVVNKVDNIKEEDE---AAEFYSLGFGEPIPISA 140 (157)
T ss_pred HHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHh--cCCCEEEEEECcccCChHHH---HHHHHhcCCCCeEEEec
Confidence 66677778999999999999999887666555566553 36899999999999987654 233444555 5666777
Q ss_pred h
Q 010472 150 K 150 (509)
Q Consensus 150 ~ 150 (509)
+
T Consensus 141 ~ 141 (157)
T cd01894 141 E 141 (157)
T ss_pred c
Confidence 4
No 450
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.16 E-value=2.8e-06 Score=85.39 Aligned_cols=57 Identities=32% Similarity=0.456 Sum_probs=43.7
Q ss_pred EEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceee---ecCeEEEEeCCCccCC
Q 010472 232 IVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLI---ISEKLVLCDCPGLVFP 288 (509)
Q Consensus 232 ~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~---~~~~i~l~d~pg~~~p 288 (509)
+++|+|+||||||||+|+|+|...+-++..+++|++..... -...+.++|+||+..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~ 61 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEK 61 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCC
Confidence 58999999999999999999986555677788887542211 1235789999998754
No 451
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.12 E-value=7.7e-07 Score=85.85 Aligned_cols=61 Identities=13% Similarity=0.039 Sum_probs=44.0
Q ss_pred CCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH--HHHHHHHHhhcCCccEEEcCCCCChhhccc
Q 010472 339 KPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR--AARIILKDFIDGKLPHFEMPPGMSHEEVGM 404 (509)
Q Consensus 339 LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r--~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~ 404 (509)
+|.|+++ +..+.+++.++.++ |+.|+|+... ....+++.+.+.+...+..+|+..-.+.++
T Consensus 92 fs~e~~~-----~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 92 FASEMSE-----TAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHHHHH-----HHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhh
Confidence 4555553 34445567788887 9999999776 456788888776777788899887777654
No 452
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.10 E-value=6.5e-07 Score=87.49 Aligned_cols=76 Identities=11% Similarity=-0.100 Sum_probs=48.3
Q ss_pred CCCCCccccCCCchHHHHHHHH--HHcCCce----e---CCCCCHHHHHHHHHHHHhhc-CCccEEEcCCCCChhhccch
Q 010472 336 PKPKPYESQSRPPLALELLRAY--CASRGYV----A---SSGLPDETRAARIILKDFID-GKLPHFEMPPGMSHEEVGME 405 (509)
Q Consensus 336 ~~~LSgGq~QR~~~~~~La~AL--a~~p~lL----P---tsGLD~~~r~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~ 405 (509)
...+|.+++++ ..+++++ +.+|.++ | |+++|.... .+.+++.+.+ .+..++..+|...-.++|+
T Consensus 87 ~~~lS~~~~e~----~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~-~~~il~~l~~~~~~~vlisTH~~el~~~~~- 160 (222)
T cd03285 87 LKGVSTFMAEM----LETAAILKSATENSLIIIDELGRGTSTYDGFGL-AWAIAEYIATQIKCFCLFATHFHELTALAD- 160 (222)
T ss_pred hcCcChHHHHH----HHHHHHHHhCCCCeEEEEecCcCCCChHHHHHH-HHHHHHHHHhcCCCeEEEEechHHHHHHhh-
Confidence 45688898888 8888888 7888887 8 788888776 2334455543 2344556678544444554
Q ss_pred hhHhhccccccc
Q 010472 406 DTQASSLLELHE 417 (509)
Q Consensus 406 ~~~~~~~~~~~~ 417 (509)
.+..+..+.+..
T Consensus 161 ~~~~i~~g~~~~ 172 (222)
T cd03285 161 EVPNVKNLHVTA 172 (222)
T ss_pred cCCCeEEEEEEE
Confidence 444455565544
No 453
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.09 E-value=3.9e-06 Score=88.67 Aligned_cols=57 Identities=33% Similarity=0.466 Sum_probs=45.3
Q ss_pred EEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee--c--CeEEEEeCCCccCCC
Q 010472 232 IVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII--S--EKLVLCDCPGLVFPS 289 (509)
Q Consensus 232 ~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~--~--~~i~l~d~pg~~~p~ 289 (509)
-|||||.||||||||||+|++.. ..++.++++|+......+ . ..+.++|+||+..+.
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a 221 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGA 221 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCc-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccc
Confidence 59999999999999999999875 466778999977654333 2 358999999998543
No 454
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.07 E-value=5.3e-06 Score=79.13 Aligned_cols=58 Identities=29% Similarity=0.313 Sum_probs=41.6
Q ss_pred EEEEEecCCCCHhHHHHHHhcCCcc-eEEeeCCcccccceee---ecCeEEEEeCCCccCCC
Q 010472 232 IVGFVGYPNVGKSSTINALVGQKRT-GVTSTPGKTKHFQTLI---ISEKLVLCDCPGLVFPS 289 (509)
Q Consensus 232 ~vglvG~nGaGKSTLln~L~G~~~~-g~~~~~G~t~~~~~~~---~~~~i~l~d~pg~~~p~ 289 (509)
.++|+|.+|||||||+|.|+|.... .....+|.|...+... ....+.++||||+....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~ 63 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTS 63 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCcc
Confidence 4789999999999999999998652 2222456665543321 23568999999998654
No 455
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.06 E-value=8.5e-06 Score=78.69 Aligned_cols=37 Identities=19% Similarity=0.072 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCce----eC-----CCCCHHHH-HHHHHHHHhhcCC
Q 010472 351 LELLRAYCASRGYV----AS-----SGLPDETR-AARIILKDFIDGK 387 (509)
Q Consensus 351 ~~La~ALa~~p~lL----Pt-----sGLD~~~r-~~~~lLkd~~~gk 387 (509)
..||++++.+|.++ |+ +|||+..+ .+.++|+.++.-+
T Consensus 161 ~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~~~ 207 (215)
T PTZ00132 161 LWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAANVP 207 (215)
T ss_pred HHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhhCC
Confidence 78999999999987 99 99999999 9999999986543
No 456
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.05 E-value=2.3e-05 Score=71.91 Aligned_cols=79 Identities=22% Similarity=0.188 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhCCEEEEEeeCCCC-CCCCChhHHHHHHHHh------cCCcEEEEEeCCCCCCHHHHHHHHHHHHhc--
Q 010472 70 DMWRQLWRVLERSDLIVMVVDARDP-LFYRCPDLEAYAREID------KYKRTLLLVNKADLLPFSVRKRWAKYFKDH-- 140 (509)
Q Consensus 70 e~wrql~rvie~sDvVl~VvDaR~P-l~~~~~~le~~v~~~~------~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~-- 140 (509)
++++..++.++.+|++++|+|+.++ ..+ ..+..+..++. .++|+++|+||+||.++.....|...+...
T Consensus 67 ~~~~~~~~~~~~~d~vi~v~D~~~~~~~~--~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~ 144 (170)
T cd01898 67 GLGHRFLRHIERTRLLLHVIDLSGDDDPV--EDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELW 144 (170)
T ss_pred CchHHHHHHHHhCCEEEEEEecCCCCCHH--HHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCC
Confidence 3566777778899999999999988 321 12333333321 368999999999999877766777655444
Q ss_pred CCeEEEeehh
Q 010472 141 DILFVFWSAK 150 (509)
Q Consensus 141 gi~~if~Sa~ 150 (509)
+..++.+||+
T Consensus 145 ~~~~~~~Sa~ 154 (170)
T cd01898 145 GKPVFPISAL 154 (170)
T ss_pred CCCEEEEecC
Confidence 5666777875
No 457
>PRK00089 era GTPase Era; Reviewed
Probab=98.04 E-value=6.3e-06 Score=83.59 Aligned_cols=59 Identities=42% Similarity=0.653 Sum_probs=42.8
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee---cCeEEEEeCCCccCCC
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII---SEKLVLCDCPGLVFPS 289 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~---~~~i~l~d~pg~~~p~ 289 (509)
.+++|+|++|||||||+|.|+|.....+...+++|++...... ...+.++|+||+.-+.
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~ 67 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK 67 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch
Confidence 4789999999999999999999765545556666654322111 2468899999986443
No 458
>PTZ00258 GTP-binding protein; Provisional
Probab=98.01 E-value=7.4e-06 Score=86.17 Aligned_cols=60 Identities=38% Similarity=0.455 Sum_probs=44.8
Q ss_pred CCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee--------------------cCeEEEEeCCCccC
Q 010472 228 PKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII--------------------SEKLVLCDCPGLVF 287 (509)
Q Consensus 228 ~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~--------------------~~~i~l~d~pg~~~ 287 (509)
..+..+||||.||||||||||+|++.. .-+..+|++|+....... ...+.++|+||++.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 356789999999999999999998864 456667887765432111 22489999999985
Q ss_pred C
Q 010472 288 P 288 (509)
Q Consensus 288 p 288 (509)
.
T Consensus 98 g 98 (390)
T PTZ00258 98 G 98 (390)
T ss_pred C
Confidence 4
No 459
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=1.1e-05 Score=84.14 Aligned_cols=69 Identities=12% Similarity=-0.007 Sum_probs=50.1
Q ss_pred ccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCC
Q 010472 324 RHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGM 397 (509)
Q Consensus 324 ~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~ 397 (509)
-+++...+..++....|||-+-| +.|||||...|-+| ||+.||--.. -+-..|+-|.. .+.++++.-++
T Consensus 398 GLGFskEMQ~rPt~kFSGGWRMR----vSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkK-TLLIVSHDQgF 471 (807)
T KOG0066|consen 398 GLGFSKEMQERPTTKFSGGWRMR----VSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKK-TLLIVSHDQGF 471 (807)
T ss_pred hcCCChhHhcCCccccCCceeee----hhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhh-eeEEEecccch
Confidence 34455445566677899999999 99999999999988 9999987655 55566666543 34555655553
No 460
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=97.98 E-value=1e-05 Score=84.33 Aligned_cols=56 Identities=32% Similarity=0.382 Sum_probs=42.7
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCccccccee--ee------------------cCeEEEEeCCCccC
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTL--II------------------SEKLVLCDCPGLVF 287 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~--~~------------------~~~i~l~d~pg~~~ 287 (509)
..+||||.||||||||+|+|+|.. .-+..+|++|+..... .. ...+.++|+||++.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~ 78 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVK 78 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCC
Confidence 579999999999999999999976 5566778877654321 11 12489999999984
No 461
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=97.98 E-value=4.5e-05 Score=79.09 Aligned_cols=80 Identities=21% Similarity=0.216 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh------cCCcEEEEEeCCCCCCHHHH-HH-HHHHHHhc
Q 010472 69 LDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREID------KYKRTLLLVNKADLLPFSVR-KR-WAKYFKDH 140 (509)
Q Consensus 69 le~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~------~~K~~iLVlNK~DL~p~~~~-~~-W~~yf~~~ 140 (509)
...+.+.++.++++|++|+|+|+.++.. ..+++.+..++. .++|+|||+||+||.+.... .. ...++...
T Consensus 224 ~gLg~~flrhie~a~vlI~ViD~s~~~s--~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~ 301 (335)
T PRK12299 224 AGLGHRFLKHIERTRLLLHLVDIEAVDP--VEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAAL 301 (335)
T ss_pred ccHHHHHHHHhhhcCEEEEEEcCCCCCC--HHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhc
Confidence 3467788888999999999999987652 123334444432 36899999999999875432 22 33334455
Q ss_pred CCeEEEeehh
Q 010472 141 DILFVFWSAK 150 (509)
Q Consensus 141 gi~~if~Sa~ 150 (509)
+..++++||+
T Consensus 302 ~~~i~~iSAk 311 (335)
T PRK12299 302 GGPVFLISAV 311 (335)
T ss_pred CCCEEEEEcC
Confidence 6777788885
No 462
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=7.5e-06 Score=86.49 Aligned_cols=62 Identities=32% Similarity=0.448 Sum_probs=52.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee---cCeEEEEeCCCccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII---SEKLVLCDCPGLVF 287 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~---~~~i~l~d~pg~~~ 287 (509)
.+..|.-++|+|+||||||||+|+|+....+-++.++|+|++.....+ ...+.++||.|+.-
T Consensus 264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe 328 (531)
T KOG1191|consen 264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE 328 (531)
T ss_pred HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEecccccc
Confidence 356788999999999999999999999888999999999987644332 34589999999985
No 463
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.97 E-value=1.8e-05 Score=79.56 Aligned_cols=60 Identities=8% Similarity=-0.063 Sum_probs=43.6
Q ss_pred CCCCccccCCCchHHHHHHHHH---------HcCCce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhc
Q 010472 337 KPKPYESQSRPPLALELLRAYC---------ASRGYV----ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEV 402 (509)
Q Consensus 337 ~~LSgGq~QR~~~~~~La~ALa---------~~p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~ 402 (509)
..+|.|++++ +.|+++|+ .+|.++ |+++||+..+ .+...|..+. -++++..+...-..+
T Consensus 182 ~~lS~Gq~~~----~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~~~~~~~~~~~ 254 (270)
T cd03242 182 DFGSQGQQRT----LALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVTTTDLADFDAL 254 (270)
T ss_pred HhCChHHHHH----HHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEEeCCchhccch
Confidence 3589999999 99998876 577776 9999999999 8888887764 244444444333344
Q ss_pred c
Q 010472 403 G 403 (509)
Q Consensus 403 ~ 403 (509)
|
T Consensus 255 ~ 255 (270)
T cd03242 255 W 255 (270)
T ss_pred h
Confidence 4
No 464
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=97.96 E-value=7.4e-06 Score=82.46 Aligned_cols=55 Identities=33% Similarity=0.393 Sum_probs=40.2
Q ss_pred EEEEecCCCCHhHHHHHHhcCCcceEEeeCCccccccee--ee------------------cCeEEEEeCCCccCC
Q 010472 233 VGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTL--II------------------SEKLVLCDCPGLVFP 288 (509)
Q Consensus 233 vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~--~~------------------~~~i~l~d~pg~~~p 288 (509)
+||||.||||||||+|+|+|... .+..++++|+..... .+ ...+.++|.||++..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~ 75 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKG 75 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCC
Confidence 58999999999999999999765 556667776543221 11 124889999999843
No 465
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.95 E-value=8e-06 Score=70.50 Aligned_cols=54 Identities=15% Similarity=-0.044 Sum_probs=38.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCccccccee-eecCeEEEEeCC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTL-IISEKLVLCDCP 283 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~-~~~~~i~l~d~p 283 (509)
.+.+|++++|+|++|||||||+++|. .|.+.+.|........ .....+.+.++.
T Consensus 11 ~i~~ge~v~I~GpSGsGKSTLl~~l~----~G~i~~~g~di~~~~~~~~~~~~~~~~q~ 65 (107)
T cd00820 11 DVYGKVGVLITGDSGIGKTELALELI----KRKHRLVGDDNVEIREDSKDELIGRNPEL 65 (107)
T ss_pred EEcCCEEEEEEcCCCCCHHHHHHHhh----CCeEEEeeEeHHHhhhhhcCCEEEEechh
Confidence 45789999999999999999999987 5677777765432221 223335555555
No 466
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=97.95 E-value=0.00011 Score=69.49 Aligned_cols=79 Identities=23% Similarity=0.306 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH-hcCCcEEEEEeCCCCCCHHH---HHHHHHHH-Hhc---
Q 010472 69 LDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREI-DKYKRTLLLVNKADLLPFSV---RKRWAKYF-KDH--- 140 (509)
Q Consensus 69 le~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~-~~~K~~iLVlNK~DL~p~~~---~~~W~~yf-~~~--- 140 (509)
.++-+++.+.+..+|++|+||||.++. .+....++..+ ..+.|+|+|+||+|++..+. .+.+.+.| +..
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~---~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGI---QPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBS---THHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred cceeecccceecccccceeeeeccccc---ccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence 468889999999999999999999986 45555666554 34788999999999994432 24455334 322
Q ss_pred ---CCeEEEeehh
Q 010472 141 ---DILFVFWSAK 150 (509)
Q Consensus 141 ---gi~~if~Sa~ 150 (509)
.+.+++.||.
T Consensus 158 ~~~~~~vi~~Sa~ 170 (188)
T PF00009_consen 158 GEEIVPVIPISAL 170 (188)
T ss_dssp TTSTEEEEEEBTT
T ss_pred ccccceEEEEecC
Confidence 2467788874
No 467
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=97.95 E-value=1.1e-05 Score=74.02 Aligned_cols=53 Identities=34% Similarity=0.527 Sum_probs=36.8
Q ss_pred EEEEecCCCCHhHHHHHHhcCCcceEEeeCCccccccee--ee-c-CeEEEEeCCCcc
Q 010472 233 VGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTL--II-S-EKLVLCDCPGLV 286 (509)
Q Consensus 233 vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~--~~-~-~~i~l~d~pg~~ 286 (509)
++|||.+|||||||+|+|.|... .+...++.|...... .. . ..+.++|+||+.
T Consensus 3 v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~ 59 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLI 59 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCccc
Confidence 78999999999999999998643 333445555433211 11 2 268899999974
No 468
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=97.95 E-value=2.9e-05 Score=83.70 Aligned_cols=60 Identities=37% Similarity=0.465 Sum_probs=46.1
Q ss_pred CCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceee--e-cCeEEEEeCCCccC
Q 010472 228 PKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLI--I-SEKLVLCDCPGLVF 287 (509)
Q Consensus 228 ~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~--~-~~~i~l~d~pg~~~ 287 (509)
..|..++|+|++|||||||+|.|+|....-+..++|+|++..... + ...+.++|+||+..
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~ 275 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRE 275 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCC
Confidence 457789999999999999999999976545567888887654322 2 23578999999853
No 469
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.94 E-value=3.2e-05 Score=78.34 Aligned_cols=60 Identities=32% Similarity=0.404 Sum_probs=46.2
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeec---CeEEEEeCCCccCCC
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIIS---EKLVLCDCPGLVFPS 289 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~---~~i~l~d~pg~~~p~ 289 (509)
..-++.|.|+||||||||+++|++.. .-+..+|-+|+...-.... ..+.++||||++--.
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~Ak-pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRP 229 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAK-PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRP 229 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCC-CccCCCCccccceeEeeeecCCceEEEecCCcccCCC
Confidence 34578899999999999999999975 4467788888766543332 368999999998543
No 470
>COG2262 HflX GTPases [General function prediction only]
Probab=97.93 E-value=6.6e-05 Score=78.17 Aligned_cols=55 Identities=31% Similarity=0.458 Sum_probs=36.0
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcc-eE---EeeCCcccccceeeecCeEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRT-GV---TSTPGKTKHFQTLIISEKLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~-g~---~~~~G~t~~~~~~~~~~~i~l~d~pg~~ 286 (509)
..++|||+.|||||||+|.|+|.... .. .....+|+.... .-...+.+-||.|++
T Consensus 193 p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l-~~g~~vlLtDTVGFI 251 (411)
T COG2262 193 PLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIEL-GDGRKVLLTDTVGFI 251 (411)
T ss_pred CeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEe-CCCceEEEecCccCc
Confidence 57999999999999999999986541 11 122223322111 112457888999987
No 471
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.92 E-value=1.1e-05 Score=80.67 Aligned_cols=61 Identities=39% Similarity=0.590 Sum_probs=49.8
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeec---CeEEEEeCCCccCCCC
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIIS---EKLVLCDCPGLVFPSF 290 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~---~~i~l~d~pg~~~p~~ 290 (509)
--.+|+||+||||||||.|-+.|...+.++....+|++.....+. .++.++|+||++-+..
T Consensus 72 ~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~ 135 (379)
T KOG1423|consen 72 SLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKM 135 (379)
T ss_pred EEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccch
Confidence 457999999999999999999999877788888888766544432 3688999999997764
No 472
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=97.91 E-value=1.5e-05 Score=74.67 Aligned_cols=59 Identities=36% Similarity=0.563 Sum_probs=43.6
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCC-cceEEeeCCcccccceeeecCeEEEEeCCCccCC
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQK-RTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFP 288 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~-~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p 288 (509)
...++|+|.+|+|||||+|.|++.. ...+...+|+|.+.........+.++|+||+...
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~ 77 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYA 77 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccc
Confidence 3578999999999999999999975 2334456677765444333457889999997543
No 473
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.90 E-value=1.7e-05 Score=71.18 Aligned_cols=57 Identities=39% Similarity=0.499 Sum_probs=40.0
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCccccccee--ee-cCeEEEEeCCCcc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTL--II-SEKLVLCDCPGLV 286 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~--~~-~~~i~l~d~pg~~ 286 (509)
|..++++|++|+|||||+|.|++....-....++++...... .. ...+.++|+||..
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 60 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIR 60 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcC
Confidence 567999999999999999999987532233456666543321 11 2357899999975
No 474
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=97.89 E-value=1.5e-05 Score=79.17 Aligned_cols=60 Identities=28% Similarity=0.421 Sum_probs=42.5
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceee---ecCeEEEEeCCCccCC
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLI---ISEKLVLCDCPGLVFP 288 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~---~~~~i~l~d~pg~~~p 288 (509)
....++|+|.+|||||||+|+|.|.....+..+.+.|...+... -...+.++|+||+...
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~ 92 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLES 92 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence 45689999999999999999999986544444544444333221 1235889999998743
No 475
>PRK15494 era GTPase Era; Provisional
Probab=97.89 E-value=1.8e-05 Score=82.35 Aligned_cols=57 Identities=35% Similarity=0.570 Sum_probs=42.8
Q ss_pred EEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceee--e-cCeEEEEeCCCccCC
Q 010472 232 IVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLI--I-SEKLVLCDCPGLVFP 288 (509)
Q Consensus 232 ~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~--~-~~~i~l~d~pg~~~p 288 (509)
.++|+|.+|||||||+|.|+|.....+...+++|++..... . ...+.++||||..-+
T Consensus 54 kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~ 113 (339)
T PRK15494 54 SVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEP 113 (339)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCC
Confidence 89999999999999999999976555556677776543221 1 346889999998633
No 476
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=97.89 E-value=7e-05 Score=69.07 Aligned_cols=77 Identities=18% Similarity=0.209 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCC--eEEE
Q 010472 69 LDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDI--LFVF 146 (509)
Q Consensus 69 le~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~gi--~~if 146 (509)
.+..+.+...+..+|++|+|+|+.++..+....+ ..+..++|+++|+||+||...+ ...+.+++.+.+. .+++
T Consensus 52 ~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~----~~~~~~~~ii~v~nK~Dl~~~~-~~~~~~~~~~~~~~~p~~~ 126 (158)
T PRK15467 52 PRWYHALITTLQDVDMLIYVHGANDPESRLPAGL----LDIGVSKRQIAVISKTDMPDAD-VAATRKLLLETGFEEPIFE 126 (158)
T ss_pred HHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHH----HhccCCCCeEEEEEccccCccc-HHHHHHHHHHcCCCCCEEE
Confidence 3567777788999999999999998875543322 2333468999999999996533 3456666666664 6777
Q ss_pred eehh
Q 010472 147 WSAK 150 (509)
Q Consensus 147 ~Sa~ 150 (509)
+||+
T Consensus 127 ~Sa~ 130 (158)
T PRK15467 127 LNSH 130 (158)
T ss_pred EECC
Confidence 8885
No 477
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=97.89 E-value=9.8e-05 Score=76.45 Aligned_cols=81 Identities=20% Similarity=0.155 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCCCCC-hhHHHHHHHH---h---cCCcEEEEEeCCCCCCHHHHHHHHHHHHh-cC
Q 010472 70 DMWRQLWRVLERSDLIVMVVDARDPLFYRC-PDLEAYAREI---D---KYKRTLLLVNKADLLPFSVRKRWAKYFKD-HD 141 (509)
Q Consensus 70 e~wrql~rvie~sDvVl~VvDaR~Pl~~~~-~~le~~v~~~---~---~~K~~iLVlNK~DL~p~~~~~~W~~yf~~-~g 141 (509)
..-.+.++-++++|++|+|+|+.++-...+ .+++.+..++ . .++|+|||+||+||.+....+.+.++|.+ .+
T Consensus 224 gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~ 303 (329)
T TIGR02729 224 GLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALG 303 (329)
T ss_pred cHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcC
Confidence 345566777899999999999987521111 1233332222 1 36899999999999987766677777754 36
Q ss_pred CeEEEeehh
Q 010472 142 ILFVFWSAK 150 (509)
Q Consensus 142 i~~if~Sa~ 150 (509)
..++++||+
T Consensus 304 ~~vi~iSAk 312 (329)
T TIGR02729 304 KPVFPISAL 312 (329)
T ss_pred CcEEEEEcc
Confidence 677788875
No 478
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.89 E-value=4.4e-06 Score=95.32 Aligned_cols=59 Identities=10% Similarity=0.014 Sum_probs=41.7
Q ss_pred CCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH-HHHHHHhhcCCccEEEcCCCCChh
Q 010472 337 KPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA-RIILKDFIDGKLPHFEMPPGMSHE 400 (509)
Q Consensus 337 ~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~-~~lLkd~~~gkl~~~~~pp~~~~~ 400 (509)
..+|+++++. ..+++++ ..+.++ |++|+|+... ++ ..+|..+.+.+..++..+|+..-.
T Consensus 384 StfS~~m~~~----~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~ 448 (771)
T TIGR01069 384 STFSGHMKNI----SAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELK 448 (771)
T ss_pred hHHHHHHHHH----HHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHH
Confidence 3467777665 6666554 567776 9999999999 66 578888877556667777775443
No 479
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=97.88 E-value=0.0001 Score=79.96 Aligned_cols=80 Identities=25% Similarity=0.159 Sum_probs=51.8
Q ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCCCCCh--h-------HHHHHHH--------HhcCCcEEEEEeCCCCCCHHHHH-H
Q 010472 71 MWRQLWRVLERSDLIVMVVDARDPLFYRCP--D-------LEAYARE--------IDKYKRTLLLVNKADLLPFSVRK-R 132 (509)
Q Consensus 71 ~wrql~rvie~sDvVl~VvDaR~Pl~~~~~--~-------le~~v~~--------~~~~K~~iLVlNK~DL~p~~~~~-~ 132 (509)
.-.+.++.+++||+||+|||+.++...++| + |..|... -...+|.|||+||+||....... .
T Consensus 226 Lg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~ 305 (500)
T PRK12296 226 LGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEF 305 (500)
T ss_pred HHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHH
Confidence 334566779999999999999653322221 2 2233220 01368999999999997654333 3
Q ss_pred HHHHHHhcCCeEEEeehh
Q 010472 133 WAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 133 W~~yf~~~gi~~if~Sa~ 150 (509)
..++|...++.++.+||.
T Consensus 306 l~~~l~~~g~~Vf~ISA~ 323 (500)
T PRK12296 306 VRPELEARGWPVFEVSAA 323 (500)
T ss_pred HHHHHHHcCCeEEEEECC
Confidence 345666678888888885
No 480
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.88 E-value=7.3e-06 Score=95.04 Aligned_cols=97 Identities=10% Similarity=-0.062 Sum_probs=76.2
Q ss_pred HhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcC--Cce----eCCCCCHHHH-HHHHHHHHhhcCCccEEE
Q 010472 320 NRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASR--GYV----ASSGLPDETR-AARIILKDFIDGKLPHFE 392 (509)
Q Consensus 320 ~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p--~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~ 392 (509)
+.+..++|......+.+..|||||+|| ++||++|+.++ .++ ||+|||+..+ .+..+|+.+++.+.+++.
T Consensus 471 ~~L~~vGL~~l~l~r~~~~LSgGE~QR----v~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIv 546 (943)
T PRK00349 471 KFLVDVGLDYLTLSRSAGTLSGGEAQR----IRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIV 546 (943)
T ss_pred HHhhccccCCCCCCCchhhCCHHHHHH----HHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 345666775422467788999999999 99999999997 555 9999999999 999999999875567777
Q ss_pred cCCCCChhhccchhhHhh------cccccccCCCC
Q 010472 393 MPPGMSHEEVGMEDTQAS------SLLELHESDAS 421 (509)
Q Consensus 393 ~pp~~~~~~~~~~~~~~~------~~~~~~~~~~~ 421 (509)
..|.+..... ++.+.++ .+|+++..++.
T Consensus 547 VeH~~~~i~~-aD~vi~LgpgaG~~~G~iv~~g~~ 580 (943)
T PRK00349 547 VEHDEDTIRA-ADYIVDIGPGAGVHGGEVVASGTP 580 (943)
T ss_pred EeCCHHHHHh-CCEEEEeccccCCCCCEEeeccCH
Confidence 8888777765 5666666 78888765443
No 481
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.87 E-value=0.00012 Score=66.38 Aligned_cols=79 Identities=19% Similarity=0.167 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHH----HHHHHHHHHh---cCCe
Q 010472 71 MWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSV----RKRWAKYFKD---HDIL 143 (509)
Q Consensus 71 ~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~----~~~W~~yf~~---~gi~ 143 (509)
+++.+...+..+|++|+|+|++++..........++.. ...+|+|+|+||+||.+... .+.+.+++.. .+..
T Consensus 64 ~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~-~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (164)
T cd04171 64 FIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILEL-LGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAP 142 (164)
T ss_pred HHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHH-hCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCc
Confidence 45566677889999999999988543211111112221 22358999999999987632 3455666665 3566
Q ss_pred EEEeehh
Q 010472 144 FVFWSAK 150 (509)
Q Consensus 144 ~if~Sa~ 150 (509)
++.+||+
T Consensus 143 ~~~~Sa~ 149 (164)
T cd04171 143 IFPVSAV 149 (164)
T ss_pred EEEEeCC
Confidence 7778875
No 482
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.87 E-value=7.5e-06 Score=94.74 Aligned_cols=96 Identities=10% Similarity=-0.047 Sum_probs=73.7
Q ss_pred CCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcC--Cce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcC
Q 010472 322 VPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASR--GYV----ASSGLPDETR-AARIILKDFIDGKLPHFEMP 394 (509)
Q Consensus 322 l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p--~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~p 394 (509)
+..++|......+.+.+|||||+|| +.||++|+.++ .++ ||+|||+..+ .+..+|+.+++.+..++...
T Consensus 471 L~~vgL~~l~l~r~~~tLSGGE~QR----v~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVe 546 (924)
T TIGR00630 471 LIDVGLDYLTLSRAAGTLSGGEAQR----IRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVE 546 (924)
T ss_pred HhhccccccccCCCcCcCCHHHHHH----HHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 4445554311356788999999999 99999999986 565 9999999999 99999999987556667777
Q ss_pred CCCChhhccchhhHhh------cccccccCCCCc
Q 010472 395 PGMSHEEVGMEDTQAS------SLLELHESDASD 422 (509)
Q Consensus 395 p~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 422 (509)
|+++... .++.+.++ ++|+++..++.+
T Consensus 547 Hd~~~i~-~aD~vi~LgpgaG~~~G~Iv~~g~~~ 579 (924)
T TIGR00630 547 HDEETIR-AADYVIDIGPGAGIHGGEVVASGTPE 579 (924)
T ss_pred CCHHHHh-hCCEEEEecccccCCCCEEeeccCHH
Confidence 7777766 46666666 788887655543
No 483
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=97.82 E-value=0.00011 Score=73.72 Aligned_cols=77 Identities=22% Similarity=0.040 Sum_probs=51.9
Q ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHHHHHH-HHHHhcCC-eEEEee
Q 010472 71 MWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWA-KYFKDHDI-LFVFWS 148 (509)
Q Consensus 71 ~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~~~W~-~yf~~~gi-~~if~S 148 (509)
+.+..+..++.+|+|++|+|+.++.... ..+...+. ..++|+++|+||+|+++++....+. ++....+. .++.+|
T Consensus 69 ~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iS 145 (270)
T TIGR00436 69 MMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQ--NLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPIS 145 (270)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHH--hcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEe
Confidence 4667788999999999999999875432 12222222 2468999999999999766554444 33333333 566788
Q ss_pred hh
Q 010472 149 AK 150 (509)
Q Consensus 149 a~ 150 (509)
|+
T Consensus 146 A~ 147 (270)
T TIGR00436 146 AL 147 (270)
T ss_pred cC
Confidence 85
No 484
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=97.81 E-value=0.00011 Score=65.58 Aligned_cols=76 Identities=24% Similarity=0.237 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHH-HHHHHHHHhcCC-eEEEe
Q 010472 70 DMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVR-KRWAKYFKDHDI-LFVFW 147 (509)
Q Consensus 70 e~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~-~~W~~yf~~~gi-~~if~ 147 (509)
+.++.+...+..+|++|+|+|+.+|..+.... +.... .+|+|+|+||+||.+.... +.-.++++..+. .++.+
T Consensus 51 ~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~---~~~~~--~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (142)
T TIGR02528 51 RLYSALIVTAADADVIALVQSATDPESRFPPG---FASIF--VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEI 125 (142)
T ss_pred HHHHHHHHHhhcCCEEEEEecCCCCCcCCChh---HHHhc--cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEE
Confidence 34566666789999999999999999866532 32222 4699999999999864322 222334445554 56667
Q ss_pred ehh
Q 010472 148 SAK 150 (509)
Q Consensus 148 Sa~ 150 (509)
||+
T Consensus 126 Sa~ 128 (142)
T TIGR02528 126 SSV 128 (142)
T ss_pred ecC
Confidence 875
No 485
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.79 E-value=0.00013 Score=66.22 Aligned_cols=87 Identities=22% Similarity=0.309 Sum_probs=66.3
Q ss_pred ccccCc--ccccHHHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCC-CHHHHHHHHH
Q 010472 59 KLVLTP--FEKNLDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLL-PFSVRKRWAK 135 (509)
Q Consensus 59 ~~~lt~--fE~nle~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~-p~~~~~~W~~ 135 (509)
..+-|| |=.|--+++.|.-....+|+|++|.||-.|...++|.+-.. + ++|+|=|+||+||. +....+.-.+
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~---f--~~pvIGVITK~Dl~~~~~~i~~a~~ 113 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASM---F--NKPVIGVITKIDLPSDDANIERAKK 113 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhcc---c--CCCEEEEEECccCccchhhHHHHHH
Confidence 344565 33455789999999999999999999999999898865432 2 68999999999999 3444555557
Q ss_pred HHHhcCCeEEE-eehh
Q 010472 136 YFKDHDILFVF-WSAK 150 (509)
Q Consensus 136 yf~~~gi~~if-~Sa~ 150 (509)
+++..|+.-+| +|+.
T Consensus 114 ~L~~aG~~~if~vS~~ 129 (143)
T PF10662_consen 114 WLKNAGVKEIFEVSAV 129 (143)
T ss_pred HHHHcCCCCeEEEECC
Confidence 78888887666 5653
No 486
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=97.78 E-value=5e-05 Score=81.67 Aligned_cols=60 Identities=33% Similarity=0.421 Sum_probs=46.1
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCccccccee--ee-cCeEEEEeCCCcc
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTL--II-SEKLVLCDCPGLV 286 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~--~~-~~~i~l~d~pg~~ 286 (509)
+..|..++|+|++|||||||+|.|++....-+..++|+|++.... .+ ...+.++|+||+.
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~ 262 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIR 262 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcc
Confidence 456789999999999999999999997655556778888765332 22 2357899999985
No 487
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.77 E-value=3.9e-05 Score=69.09 Aligned_cols=58 Identities=41% Similarity=0.614 Sum_probs=36.8
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee---cCeEEEEeCCCccCC
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII---SEKLVLCDCPGLVFP 288 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~---~~~i~l~d~pg~~~p 288 (509)
..++++|++|||||||+|.|+|....-....++.+........ ...+.++|+||+..+
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 64 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKP 64 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcc
Confidence 4689999999999999999999743222222223322111111 235779999998643
No 488
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=97.77 E-value=2.8e-05 Score=80.63 Aligned_cols=55 Identities=36% Similarity=0.547 Sum_probs=42.5
Q ss_pred EEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceee--e--cCeEEEEeCCCccC
Q 010472 232 IVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLI--I--SEKLVLCDCPGLVF 287 (509)
Q Consensus 232 ~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~--~--~~~i~l~d~pg~~~ 287 (509)
-|||||.||||||||||+|++.. ..++.++++|+...... . ...+.++|+||+..
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ 218 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIE 218 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccC
Confidence 68999999999999999999864 34677788887654322 2 23589999999863
No 489
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.76 E-value=0.00018 Score=65.41 Aligned_cols=75 Identities=24% Similarity=0.331 Sum_probs=52.4
Q ss_pred HHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCH--HHHHHHHHHHHhc-----CCeEEE
Q 010472 74 QLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPF--SVRKRWAKYFKDH-----DILFVF 146 (509)
Q Consensus 74 ql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~--~~~~~W~~yf~~~-----gi~~if 146 (509)
+....+..+|+++.|+|+.+|.......+..++. ..++|+++|+||+|+.+. .....+.+.+.+. +..++.
T Consensus 77 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~--~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (174)
T cd01895 77 RTLKAIERADVVLLVIDATEGITEQDLRIAGLIL--EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVF 154 (174)
T ss_pred HHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHH--hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEE
Confidence 3445678999999999999998754433333332 247899999999999876 4556666666543 245666
Q ss_pred eehh
Q 010472 147 WSAK 150 (509)
Q Consensus 147 ~Sa~ 150 (509)
.||+
T Consensus 155 ~Sa~ 158 (174)
T cd01895 155 ISAL 158 (174)
T ss_pred Eecc
Confidence 7775
No 490
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.76 E-value=0.00023 Score=67.94 Aligned_cols=78 Identities=28% Similarity=0.345 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCCCCC-hhHHHHHHHHh-cCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCeEEEe
Q 010472 70 DMWRQLWRVLERSDLIVMVVDARDPLFYRC-PDLEAYAREID-KYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFW 147 (509)
Q Consensus 70 e~wrql~rvie~sDvVl~VvDaR~Pl~~~~-~~le~~v~~~~-~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~gi~~if~ 147 (509)
+.|+..+..+..+|++++|+|+++|..+.. ..+..++..+. .++|+++|+||+|+.+..... ..+...+..++++
T Consensus 109 ~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~~~~~~~~~~ 185 (204)
T cd01878 109 EAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERLEAGRPDAVFI 185 (204)
T ss_pred HHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HHhhcCCCceEEE
Confidence 456666777889999999999999875432 12233444332 357999999999999876543 3344556677788
Q ss_pred ehh
Q 010472 148 SAK 150 (509)
Q Consensus 148 Sa~ 150 (509)
||+
T Consensus 186 Sa~ 188 (204)
T cd01878 186 SAK 188 (204)
T ss_pred EcC
Confidence 885
No 491
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.75 E-value=1.1e-05 Score=76.58 Aligned_cols=54 Identities=13% Similarity=0.022 Sum_probs=37.2
Q ss_pred HHHHHHHH--cCCce----eCCCCCHHHH-H-HHHHHHHhhc-CCccEEEcCCCCChhhccch
Q 010472 352 ELLRAYCA--SRGYV----ASSGLPDETR-A-ARIILKDFID-GKLPHFEMPPGMSHEEVGME 405 (509)
Q Consensus 352 ~La~ALa~--~p~lL----PtsGLD~~~r-~-~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~ 405 (509)
.+++++.. +|.++ |++|+|+..+ . +..+++.+.+ .+..++..+|.+.-..+|+.
T Consensus 68 ~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 68 ETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADE 130 (185)
T ss_pred HHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhc
Confidence 34555555 78876 9999999977 5 4677777765 35567777888766666543
No 492
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.75 E-value=0.00019 Score=76.95 Aligned_cols=166 Identities=12% Similarity=0.052 Sum_probs=89.7
Q ss_pred ccCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccc-cc--------eeeecCeEEEEeCCCccCCCCccc
Q 010472 225 NVAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKH-FQ--------TLIISEKLVLCDCPGLVFPSFSIS 293 (509)
Q Consensus 225 ~~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~-~~--------~~~~~~~i~l~d~pg~~~p~~~~~ 293 (509)
..+.+|++++|+|+||+|||||+++|+|... .|++...|..-. .. ...+.+.+.++.+..- +
T Consensus 153 ~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~-------~ 225 (438)
T PRK07721 153 LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ-------P 225 (438)
T ss_pred eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC-------C
Confidence 5678999999999999999999999999876 555555443211 11 0112233444432110 1
Q ss_pred HHHHHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHH---HHcCCcee-CCCC
Q 010472 294 RYDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAY---CASRGYVA-SSGL 369 (509)
Q Consensus 294 ~~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~AL---a~~p~lLP-tsGL 369 (509)
....+.. ... .-.+++++-..+. +.+ -..+++ ..+|+|+ ....+=.| +.|+
T Consensus 226 ~~~r~~~----------~~~-a~~iAEyfr~~g~-~Vl--l~~Dsl-----------tr~A~A~rEisl~~ge~P~~~G~ 280 (438)
T PRK07721 226 ALMRIKG----------AYT-ATAIAEYFRDQGL-NVM--LMMDSV-----------TRVAMAQREIGLAVGEPPTTKGY 280 (438)
T ss_pred HHHHHHH----------HHH-HHHHHHHHHHCCC-cEE--EEEeCh-----------HHHHHHHHHHHHhcCCCCccccC
Confidence 1111111 000 0112222211110 000 001111 2233333 22233334 6899
Q ss_pred CHHHH-HHHHHHHHhhc---CC----ccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 370 PDETR-AARIILKDFID---GK----LPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 370 D~~~r-~~~~lLkd~~~---gk----l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
|+... .+..++..+.. |. .+++...|+|+ +++++.+..+..|.++....-...
T Consensus 281 dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~--e~i~d~v~~i~dG~Ivls~~la~~ 341 (438)
T PRK07721 281 TPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMN--EPIADTVRGILDGHFVLDRQLANK 341 (438)
T ss_pred CHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCC--chhhhhEEEecCEEEEEeccHHHC
Confidence 99999 89999999873 44 24456678887 477777777788888776555443
No 493
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=97.74 E-value=2.4e-05 Score=72.04 Aligned_cols=51 Identities=37% Similarity=0.583 Sum_probs=34.8
Q ss_pred EEecCCCCHhHHHHHHhcCCcceEEeeCCcccccce--eee--cCeEEEEeCCCcc
Q 010472 235 FVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQT--LII--SEKLVLCDCPGLV 286 (509)
Q Consensus 235 lvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~--~~~--~~~i~l~d~pg~~ 286 (509)
|+|++|||||||+|+|+|... .+...+++|..... ... ...+.++|+||+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~ 55 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLI 55 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccc
Confidence 589999999999999999753 23334454433221 112 3467899999974
No 494
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.72 E-value=4.1e-05 Score=73.16 Aligned_cols=57 Identities=30% Similarity=0.295 Sum_probs=37.2
Q ss_pred EEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCC--cccccceee--ecCeEEEEeCCCccCC
Q 010472 232 IVGFVGYPNVGKSSTINALVGQKR--TGVTSTPG--KTKHFQTLI--ISEKLVLCDCPGLVFP 288 (509)
Q Consensus 232 ~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G--~t~~~~~~~--~~~~i~l~d~pg~~~p 288 (509)
.++|+|.+|||||||+|+|+|... .|.+.... ++.....+. ....+.++|+||+-..
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~ 65 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGST 65 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcc
Confidence 588999999999999999999654 34333332 222211111 1236889999997643
No 495
>PRK04213 GTP-binding protein; Provisional
Probab=97.72 E-value=4.4e-05 Score=72.63 Aligned_cols=54 Identities=35% Similarity=0.539 Sum_probs=40.1
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeecCeEEEEeCCCc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGL 285 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~ 285 (509)
...++|+|.+|||||||+|.|+|... .+...+|.|......... .+.++|+||+
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~ 62 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKV-RVGKRPGVTRKPNHYDWG-DFILTDLPGF 62 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCceeeCceEEeec-ceEEEeCCcc
Confidence 45789999999999999999998653 234456766554433333 6889999996
No 496
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.72 E-value=0.00014 Score=65.15 Aligned_cols=71 Identities=25% Similarity=0.202 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCeEEEeehh
Q 010472 71 MWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 71 ~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~gi~~if~Sa~ 150 (509)
.+++.+..+.++|+++.|+|+.++.......+. .. ..++|+++|+||+|+.+.... .....+..++.+||.
T Consensus 70 ~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~---~~-~~~~~vi~v~nK~D~~~~~~~-----~~~~~~~~~~~~Sa~ 140 (157)
T cd04164 70 GIERAREAIEEADLVLFVIDASRGLDEEDLEIL---EL-PADKPIIVVLNKSDLLPDSEL-----LSLLAGKPIIAISAK 140 (157)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHH---Hh-hcCCCEEEEEEchhcCCcccc-----ccccCCCceEEEECC
Confidence 456677888999999999999998864433222 21 357999999999999986543 233345667778874
No 497
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=97.72 E-value=2.2e-05 Score=81.74 Aligned_cols=84 Identities=12% Similarity=-0.031 Sum_probs=65.3
Q ss_pred hhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhh
Q 010472 327 IENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEE 401 (509)
Q Consensus 327 L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~ 401 (509)
|.. ..++-...||||+.|| .+||.+.++..++. |.+-||...| .+...|+.+..-.--++..-|+++--.
T Consensus 203 L~~-~~~re~~~lsggelqr----faia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLD 277 (592)
T KOG0063|consen 203 LNN-LLDREVEQLSGGELQR----FAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLD 277 (592)
T ss_pred Hhh-HHHhhhhhcccchhhh----hhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHH
Confidence 443 4455577899999999 99999999999876 9999999999 888899998776555666667777777
Q ss_pred ccchhhHhhccccc
Q 010472 402 VGMEDTQASSLLEL 415 (509)
Q Consensus 402 ~~~~~~~~~~~~~~ 415 (509)
|.++.+-.++|---
T Consensus 278 ylSDFiCcLYGvp~ 291 (592)
T KOG0063|consen 278 YLSDFICCLYGVPS 291 (592)
T ss_pred hhhcceeEEecCCc
Confidence 77777666665443
No 498
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=97.71 E-value=0.00013 Score=67.16 Aligned_cols=80 Identities=25% Similarity=0.177 Sum_probs=53.0
Q ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCC----CCChhHHHHHHHHh-----------cCCcEEEEEeCCCCCCHHHHHHH--
Q 010472 71 MWRQLWRVLERSDLIVMVVDARDPLF----YRCPDLEAYAREID-----------KYKRTLLLVNKADLLPFSVRKRW-- 133 (509)
Q Consensus 71 ~wrql~rvie~sDvVl~VvDaR~Pl~----~~~~~le~~v~~~~-----------~~K~~iLVlNK~DL~p~~~~~~W-- 133 (509)
.++++++.+..+|+|++|+|+.++.. .....+..+..++. .++|+++|+||+|+........|
T Consensus 64 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~ 143 (176)
T cd01881 64 LGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELV 143 (176)
T ss_pred ccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHH
Confidence 56677888999999999999998841 11122222222221 36899999999999987766666
Q ss_pred HHHHHhcCCeEEEeehh
Q 010472 134 AKYFKDHDILFVFWSAK 150 (509)
Q Consensus 134 ~~yf~~~gi~~if~Sa~ 150 (509)
.......+..++.+||+
T Consensus 144 ~~~~~~~~~~~~~~Sa~ 160 (176)
T cd01881 144 RELALEEGAEVVPISAK 160 (176)
T ss_pred HHHhcCCCCCEEEEehh
Confidence 22223345566677875
No 499
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=97.68 E-value=5.3e-05 Score=80.86 Aligned_cols=55 Identities=31% Similarity=0.481 Sum_probs=42.8
Q ss_pred EEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee----cCeEEEEeCCCccC
Q 010472 232 IVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII----SEKLVLCDCPGLVF 287 (509)
Q Consensus 232 ~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~----~~~i~l~d~pg~~~ 287 (509)
-|+|||.||||||||||+|++... .++.++++|+......+ ...+.++|+||+..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~-kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGlie 218 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKP-KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIE 218 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCC-ccccCCcceeceEEEEEEEeCCceEEEEECCCCcc
Confidence 699999999999999999998754 34567888876543322 34689999999874
No 500
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=97.67 E-value=0.00045 Score=66.31 Aligned_cols=79 Identities=16% Similarity=0.187 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH--hcCCcEEEEEeCCCCCCHHHH----HHHHHHHHh---c
Q 010472 70 DMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREI--DKYKRTLLLVNKADLLPFSVR----KRWAKYFKD---H 140 (509)
Q Consensus 70 e~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~--~~~K~~iLVlNK~DL~p~~~~----~~W~~yf~~---~ 140 (509)
++-+...+.+..+|++|+|+|+.+|... +.....+..+ ...+++|||+||+||...... +...+++.. .
T Consensus 95 ~~~~~~~~~~~~~D~~llVvd~~~~~~~--~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~ 172 (203)
T cd01888 95 ILMATMLSGAAVMDGALLLIAANEPCPQ--PQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAE 172 (203)
T ss_pred HHHHHHHHhhhcCCEEEEEEECCCCCCC--cchHHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHHHHHHHHHhccccC
Confidence 4667778889999999999999986421 2222233222 223578999999999975433 233333433 2
Q ss_pred CCeEEEeehh
Q 010472 141 DILFVFWSAK 150 (509)
Q Consensus 141 gi~~if~Sa~ 150 (509)
++.++++||+
T Consensus 173 ~~~i~~vSA~ 182 (203)
T cd01888 173 NAPIIPISAQ 182 (203)
T ss_pred CCcEEEEeCC
Confidence 5667778875
Done!