Query 010472
Match_columns 509
No_of_seqs 625 out of 2810
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 07:33:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010472.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010472hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1puj_A YLQF, conserved hypothe 100.0 2.3E-31 8E-36 267.0 26.1 264 69-395 11-279 (282)
2 3cnl_A YLQF, putative uncharac 100.0 1.7E-29 5.9E-34 250.8 11.3 236 70-395 10-247 (262)
3 3tui_C Methionine import ATP-b 99.9 2.9E-26 1E-30 236.7 6.4 206 226-444 50-267 (366)
4 3fvq_A Fe(3+) IONS import ATP- 99.9 2E-25 7E-30 230.1 8.4 190 226-424 26-226 (359)
5 3rlf_A Maltose/maltodextrin im 99.9 2.1E-25 7.1E-30 231.6 7.2 204 226-443 25-236 (381)
6 1g6h_A High-affinity branched- 99.9 4E-25 1.4E-29 218.7 7.9 189 226-421 29-237 (257)
7 3gfo_A Cobalt import ATP-bindi 99.9 2.2E-25 7.4E-30 222.7 5.6 190 226-424 30-231 (275)
8 1vpl_A ABC transporter, ATP-bi 99.9 1.8E-25 6.2E-30 221.1 4.8 188 226-422 37-231 (256)
9 4g1u_C Hemin import ATP-bindin 99.9 1.8E-25 6.3E-30 222.3 4.8 199 226-442 33-246 (266)
10 1b0u_A Histidine permease; ABC 99.9 2.5E-25 8.5E-30 220.8 5.7 189 226-422 28-238 (262)
11 2olj_A Amino acid ABC transpor 99.9 2.8E-25 9.6E-30 220.6 6.0 189 226-422 46-244 (263)
12 3tif_A Uncharacterized ABC tra 99.9 4E-25 1.4E-29 215.9 6.4 189 226-421 27-229 (235)
13 1v43_A Sugar-binding transport 99.9 1.3E-24 4.5E-29 225.5 9.0 189 226-424 33-229 (372)
14 1ji0_A ABC transporter; ATP bi 99.9 1.2E-24 4.2E-29 213.1 8.2 186 226-421 28-223 (240)
15 2yyz_A Sugar ABC transporter, 99.9 8.5E-25 2.9E-29 225.9 7.3 189 226-424 25-221 (359)
16 1z47_A CYSA, putative ABC-tran 99.9 7.5E-25 2.6E-29 225.8 6.2 189 226-424 37-233 (355)
17 1oxx_K GLCV, glucose, ABC tran 99.9 7E-25 2.4E-29 226.3 4.7 207 226-445 27-245 (353)
18 2it1_A 362AA long hypothetical 99.9 1.1E-24 3.7E-29 225.4 5.5 188 226-423 25-220 (362)
19 2pcj_A ABC transporter, lipopr 99.9 1.2E-24 4.2E-29 210.9 5.3 183 226-418 26-220 (224)
20 2yz2_A Putative ABC transporte 99.9 2.3E-24 7.9E-29 214.3 7.4 184 226-421 29-222 (266)
21 1g29_1 MALK, maltose transport 99.9 1.5E-24 5.2E-29 225.2 5.8 189 226-423 25-226 (372)
22 2ihy_A ABC transporter, ATP-bi 99.9 1.3E-24 4.4E-29 217.6 4.4 192 226-422 43-248 (279)
23 2onk_A Molybdate/tungstate ABC 99.9 2.2E-24 7.4E-29 211.4 5.8 184 226-422 21-212 (240)
24 3d31_A Sulfate/molybdate ABC t 99.9 8.3E-25 2.9E-29 225.2 2.8 203 226-445 22-232 (348)
25 2d2e_A SUFC protein; ABC-ATPas 99.9 1.1E-23 3.8E-28 207.5 6.7 190 226-422 25-229 (250)
26 2qi9_C Vitamin B12 import ATP- 99.9 1.3E-23 4.6E-28 206.8 6.2 182 226-421 22-217 (249)
27 2nq2_C Hypothetical ABC transp 99.9 2.4E-23 8.1E-28 205.6 7.3 175 226-420 27-211 (253)
28 2zu0_C Probable ATP-dependent 99.9 6E-23 2.1E-27 204.2 8.4 189 226-421 42-249 (267)
29 2ixe_A Antigen peptide transpo 99.9 4.3E-23 1.5E-27 205.7 6.5 187 226-421 41-240 (271)
30 1sgw_A Putative ABC transporte 99.9 6.2E-23 2.1E-27 197.6 6.5 171 226-412 31-208 (214)
31 2ff7_A Alpha-hemolysin translo 99.9 1.4E-22 4.7E-27 199.4 8.2 182 226-422 31-228 (247)
32 2rcn_A Probable GTPase ENGC; Y 99.9 6E-23 2.1E-27 211.6 3.4 212 60-357 104-328 (358)
33 1mv5_A LMRA, multidrug resista 99.9 3E-22 1E-26 196.5 6.6 182 226-421 24-221 (243)
34 3nh6_A ATP-binding cassette SU 99.9 3E-22 1E-26 202.7 6.2 183 226-423 76-274 (306)
35 2ghi_A Transport protein; mult 99.8 1.5E-21 5.1E-26 193.4 10.7 179 226-421 42-237 (260)
36 3gd7_A Fusion complex of cysti 99.8 5.1E-22 1.7E-26 207.3 6.1 195 226-443 43-255 (390)
37 2pjz_A Hypothetical protein ST 99.8 1.5E-21 5.1E-26 193.7 6.8 174 226-420 27-209 (263)
38 2cbz_A Multidrug resistance-as 99.8 6.6E-21 2.3E-25 186.2 8.9 167 226-419 27-210 (237)
39 1t9h_A YLOQ, probable GTPase E 99.8 7.6E-21 2.6E-25 192.4 7.6 162 58-290 66-239 (307)
40 2pze_A Cystic fibrosis transme 99.8 7.9E-21 2.7E-25 184.7 6.4 169 226-421 30-213 (229)
41 2yv5_A YJEQ protein; hydrolase 99.8 5.8E-20 2E-24 185.8 10.1 141 78-286 76-227 (302)
42 4a82_A Cystic fibrosis transme 99.8 2.8E-20 9.5E-25 204.0 6.3 183 226-423 363-561 (578)
43 3qf4_B Uncharacterized ABC tra 99.8 1.3E-19 4.5E-24 199.5 11.4 181 226-424 377-576 (598)
44 2yl4_A ATP-binding cassette SU 99.8 1.3E-19 4.4E-24 199.5 11.0 185 226-422 366-566 (595)
45 3b60_A Lipid A export ATP-bind 99.8 8E-20 2.7E-24 200.6 9.2 183 226-422 365-563 (582)
46 3b5x_A Lipid A export ATP-bind 99.8 6.7E-20 2.3E-24 201.2 8.3 184 226-423 365-564 (582)
47 2bbs_A Cystic fibrosis transme 99.8 8.8E-20 3E-24 183.4 7.0 165 226-421 60-242 (290)
48 3qf4_A ABC transporter, ATP-bi 99.8 2.3E-19 7.8E-24 197.1 6.9 183 226-423 365-563 (587)
49 3ozx_A RNAse L inhibitor; ATP 99.8 4.5E-19 1.5E-23 192.5 9.0 167 226-415 290-464 (538)
50 3ec1_A YQEH GTPase; atnos1, at 99.8 7.7E-18 2.6E-22 174.9 15.4 154 70-289 60-226 (369)
51 1yqt_A RNAse L inhibitor; ATP- 99.7 6.2E-19 2.1E-23 191.6 6.5 161 227-412 309-477 (538)
52 3bk7_A ABC transporter ATP-bin 99.7 5.3E-19 1.8E-23 194.5 5.5 161 227-412 379-547 (607)
53 3j16_B RLI1P; ribosome recycli 99.7 2.6E-18 8.9E-23 188.8 7.5 175 226-423 374-556 (608)
54 3h2y_A GTPase family protein; 99.7 1.6E-17 5.3E-22 172.5 12.5 154 70-289 57-225 (368)
55 3g5u_A MCG1178, multidrug resi 99.7 1.8E-17 6.2E-22 196.4 10.0 187 226-422 1055-1254(1284)
56 1u0l_A Probable GTPase ENGC; p 99.7 1.2E-16 4.2E-21 161.3 13.0 142 78-287 81-233 (301)
57 1yqt_A RNAse L inhibitor; ATP- 99.7 3.4E-18 1.2E-22 185.8 1.3 173 226-414 43-235 (538)
58 3bk7_A ABC transporter ATP-bin 99.7 3.4E-18 1.2E-22 188.1 1.0 173 226-414 113-305 (607)
59 3ozx_A RNAse L inhibitor; ATP 99.7 9.4E-18 3.2E-22 182.1 4.3 176 225-417 20-217 (538)
60 3g5u_A MCG1178, multidrug resi 99.7 4.4E-17 1.5E-21 193.1 9.7 182 226-422 412-609 (1284)
61 4f4c_A Multidrug resistance pr 99.7 2.4E-17 8.3E-22 195.9 5.7 187 226-425 1101-1304(1321)
62 3j16_B RLI1P; ribosome recycli 99.7 2.2E-17 7.4E-22 181.5 4.7 177 226-416 99-300 (608)
63 4f4c_A Multidrug resistance pr 99.7 1E-16 3.5E-21 190.5 8.9 182 226-421 440-636 (1321)
64 3ux8_A Excinuclease ABC, A sub 99.6 1.7E-16 5.8E-21 176.9 4.1 89 332-425 537-639 (670)
65 3ux8_A Excinuclease ABC, A sub 99.6 6.9E-17 2.4E-21 180.0 -0.1 95 324-423 188-295 (670)
66 2iw3_A Elongation factor 3A; a 99.6 5.8E-16 2E-20 176.8 6.6 162 226-416 457-624 (986)
67 1mky_A Probable GTP-binding pr 99.6 8.4E-15 2.9E-19 155.3 14.6 165 70-285 70-238 (439)
68 2iw3_A Elongation factor 3A; a 99.6 4.9E-16 1.7E-20 177.4 3.4 95 318-419 880-980 (986)
69 2hjg_A GTP-binding protein ENG 99.4 6.5E-14 2.2E-18 148.3 7.2 160 70-286 71-234 (436)
70 2vf7_A UVRA2, excinuclease ABC 99.4 7E-15 2.4E-19 166.3 -1.6 102 318-424 710-825 (842)
71 2npi_A Protein CLP1; CLP1-PCF1 99.4 1.7E-15 5.9E-20 161.4 -6.5 172 227-420 135-333 (460)
72 3pih_A Uvrabc system protein A 99.4 5.6E-14 1.9E-18 160.2 5.2 104 318-426 785-902 (916)
73 4dcu_A GTP-binding protein ENG 99.4 9.8E-13 3.3E-17 140.0 9.4 160 70-286 91-254 (456)
74 4aby_A DNA repair protein RECN 99.3 2.5E-13 8.5E-18 142.2 4.1 73 339-417 296-379 (415)
75 2r6f_A Excinuclease ABC subuni 99.3 4.8E-14 1.6E-18 160.1 -1.7 100 320-424 827-940 (972)
76 2ygr_A Uvrabc system protein A 99.3 9.9E-14 3.4E-18 158.0 -0.8 99 320-423 845-957 (993)
77 1tq4_A IIGP1, interferon-induc 99.3 3.9E-13 1.3E-17 141.1 2.2 153 229-414 68-255 (413)
78 3qf7_A RAD50; ABC-ATPase, ATPa 99.3 1.3E-12 4.4E-17 135.3 3.8 79 334-417 275-364 (365)
79 2e87_A Hypothetical protein PH 99.3 4.2E-13 1.4E-17 138.3 -0.6 161 82-288 58-227 (357)
80 3b85_A Phosphate starvation-in 99.2 5.9E-14 2E-18 134.2 -8.0 136 228-402 20-163 (208)
81 3sop_A Neuronal-specific septi 99.2 8.3E-13 2.8E-17 131.2 -0.9 130 231-381 3-138 (270)
82 4gp7_A Metallophosphoesterase; 99.2 4.1E-13 1.4E-17 123.9 -3.0 65 336-404 81-166 (171)
83 2v9p_A Replication protein E1; 99.2 2.5E-13 8.5E-18 137.1 -5.0 139 226-422 122-262 (305)
84 1znw_A Guanylate kinase, GMP k 99.2 2.4E-13 8.1E-18 129.2 -4.9 165 225-410 15-201 (207)
85 1ye8_A Protein THEP1, hypothet 99.2 6.6E-13 2.3E-17 123.8 -2.7 145 232-419 2-161 (178)
86 1pui_A ENGB, probable GTP-bind 99.1 2E-11 7E-16 114.7 3.4 157 226-385 22-198 (210)
87 2obl_A ESCN; ATPase, hydrolase 99.1 4.1E-11 1.4E-15 123.1 3.1 165 226-422 67-251 (347)
88 1e69_A Chromosome segregation 99.1 8.4E-11 2.9E-15 119.4 5.2 66 335-405 216-290 (322)
89 2pt7_A CAG-ALFA; ATPase, prote 99.0 1.6E-10 5.5E-15 118.0 6.1 117 227-412 168-290 (330)
90 2dpy_A FLII, flagellum-specifi 99.0 1.9E-11 6.3E-16 129.5 -1.0 166 225-421 152-339 (438)
91 3b9q_A Chloroplast SRP recepto 99.0 9.9E-12 3.4E-16 125.4 -4.9 150 227-403 97-262 (302)
92 2og2_A Putative signal recogni 98.9 3.3E-11 1.1E-15 124.3 -4.2 159 227-411 154-328 (359)
93 2qtf_A Protein HFLX, GTP-bindi 98.9 2E-10 6.8E-15 118.8 0.7 55 232-287 181-238 (364)
94 3aez_A Pantothenate kinase; tr 98.9 7.5E-11 2.6E-15 119.5 -3.2 150 227-408 87-241 (312)
95 1z6g_A Guanylate kinase; struc 98.9 2.9E-12 9.9E-17 123.0 -12.9 144 226-384 19-174 (218)
96 1tf7_A KAIC; homohexamer, hexa 98.8 5.8E-10 2E-14 120.7 -0.0 149 226-414 277-444 (525)
97 3qkt_A DNA double-strand break 98.8 1.5E-09 5E-14 111.1 2.0 75 333-407 243-324 (339)
98 1tf7_A KAIC; homohexamer, hexa 98.8 1.4E-11 4.8E-16 133.4 -14.2 163 226-414 35-211 (525)
99 1zp6_A Hypothetical protein AT 98.7 2E-09 6.7E-14 99.8 0.2 40 226-265 5-44 (191)
100 2qm8_A GTPase/ATPase; G protei 98.7 3.8E-10 1.3E-14 115.5 -5.4 38 226-263 51-90 (337)
101 3asz_A Uridine kinase; cytidin 98.7 1E-09 3.5E-14 103.7 -2.2 131 228-383 4-146 (211)
102 2jeo_A Uridine-cytidine kinase 98.7 3.5E-10 1.2E-14 110.0 -6.4 124 226-371 21-144 (245)
103 2ehv_A Hypothetical protein PH 98.6 1.6E-09 5.6E-14 104.3 -3.1 28 226-253 26-55 (251)
104 1rj9_A FTSY, signal recognitio 98.6 4.6E-10 1.6E-14 113.3 -7.3 152 229-402 101-263 (304)
105 3thx_A DNA mismatch repair pro 98.6 8.9E-09 3.1E-13 117.9 2.3 75 338-417 721-804 (934)
106 3thx_B DNA mismatch repair pro 98.5 7.7E-09 2.6E-13 118.2 -0.4 65 337-406 734-805 (918)
107 2eyu_A Twitching motility prot 98.5 1.4E-07 4.7E-12 93.0 7.1 38 227-264 22-62 (261)
108 1udx_A The GTP-binding protein 98.5 1.8E-08 6E-13 105.9 0.2 139 226-385 153-296 (416)
109 1cr0_A DNA primase/helicase; R 98.5 3.1E-08 1.1E-12 98.7 1.4 30 226-255 31-60 (296)
110 2i3b_A HCR-ntpase, human cance 98.4 1E-08 3.4E-13 96.4 -2.4 34 230-264 1-35 (189)
111 2qag_B Septin-6, protein NEDD5 98.4 7.7E-08 2.6E-12 101.0 4.0 45 351-395 167-217 (427)
112 2f1r_A Molybdopterin-guanine d 98.4 7.8E-09 2.7E-13 95.6 -4.7 35 231-265 3-42 (171)
113 1htw_A HI0065; nucleotide-bind 98.4 1.2E-07 3.9E-12 86.5 3.0 42 226-267 29-71 (158)
114 2bdt_A BH3686; alpha-beta prot 98.4 3.6E-08 1.2E-12 91.4 -1.0 76 340-422 96-180 (189)
115 3szr_A Interferon-induced GTP- 98.3 2.8E-08 9.6E-13 109.4 -2.4 137 232-404 47-203 (608)
116 2o8b_B DNA mismatch repair pro 98.3 9.3E-08 3.2E-12 110.7 0.5 65 351-416 859-930 (1022)
117 4a74_A DNA repair and recombin 98.3 4.4E-07 1.5E-11 86.0 4.2 29 226-254 21-49 (231)
118 1ewq_A DNA mismatch repair pro 98.2 9.1E-08 3.1E-12 107.6 -1.3 115 230-403 576-704 (765)
119 2qnr_A Septin-2, protein NEDD5 98.2 1E-07 3.5E-12 95.8 -0.9 131 231-399 19-169 (301)
120 2bbw_A Adenylate kinase 4, AK4 98.2 3.3E-08 1.1E-12 95.9 -5.0 34 229-262 26-64 (246)
121 2gza_A Type IV secretion syste 98.2 1.5E-06 5.2E-11 89.5 7.0 38 227-264 172-211 (361)
122 3jvv_A Twitching mobility prot 98.2 1.3E-06 4.4E-11 89.9 5.7 53 351-409 187-243 (356)
123 1nlf_A Regulatory protein REPA 98.2 1.2E-06 4.2E-11 86.4 5.2 146 226-399 26-183 (279)
124 1oix_A RAS-related protein RAB 98.2 6.1E-06 2.1E-10 76.4 9.5 32 351-382 154-188 (191)
125 4a9a_A Ribosome-interacting GT 98.1 2.3E-06 7.8E-11 88.6 6.7 56 231-287 73-131 (376)
126 1ni3_A YCHF GTPase, YCHF GTP-b 98.1 1.4E-06 4.9E-11 90.6 4.9 62 226-287 16-97 (392)
127 2gj8_A MNME, tRNA modification 98.1 2.6E-06 8.8E-11 77.6 5.9 58 229-286 3-63 (172)
128 1p9r_A General secretion pathw 98.1 4.1E-08 1.4E-12 103.2 -7.4 39 228-266 165-205 (418)
129 1f2t_B RAD50 ABC-ATPase; DNA d 98.1 7.4E-07 2.5E-11 80.3 1.6 73 333-410 52-135 (148)
130 3pih_A Uvrabc system protein A 98.1 3.6E-07 1.2E-11 104.3 -0.7 99 320-423 446-557 (916)
131 1x3s_A RAS-related protein RAB 98.0 7.8E-06 2.7E-10 74.8 7.8 72 77-150 83-160 (195)
132 2ewv_A Twitching motility prot 98.0 4.3E-06 1.5E-10 86.4 6.5 37 227-263 133-172 (372)
133 2f9l_A RAB11B, member RAS onco 98.0 1.7E-05 5.8E-10 73.6 10.0 25 231-255 6-30 (199)
134 1wb9_A DNA mismatch repair pro 98.0 1.2E-06 4.2E-11 99.0 1.7 53 354-406 680-739 (800)
135 1ega_A Protein (GTP-binding pr 98.0 3.8E-06 1.3E-10 84.2 5.0 57 230-286 8-67 (301)
136 1svi_A GTP-binding protein YSX 98.0 1E-05 3.5E-10 74.3 7.1 60 230-289 23-83 (195)
137 3iev_A GTP-binding protein ERA 98.0 6.6E-06 2.3E-10 82.7 6.1 60 230-289 10-73 (308)
138 1wf3_A GTP-binding protein; GT 98.0 6.9E-06 2.4E-10 82.4 6.1 58 232-289 9-69 (301)
139 3c8u_A Fructokinase; YP_612366 98.0 2.5E-06 8.7E-11 80.4 2.7 28 228-255 20-47 (208)
140 2qag_C Septin-7; cell cycle, c 98.0 1E-06 3.5E-11 92.5 -0.0 24 232-255 33-56 (418)
141 3tr0_A Guanylate kinase, GMP k 98.0 3E-06 1E-10 78.9 3.0 29 227-255 4-32 (205)
142 3k53_A Ferrous iron transport 97.9 1.1E-05 3.8E-10 79.2 6.7 55 231-286 4-61 (271)
143 3pqc_A Probable GTP-binding pr 97.9 1.1E-05 3.7E-10 73.7 5.8 58 231-288 24-81 (195)
144 2w0m_A SSO2452; RECA, SSPF, un 97.9 3.7E-06 1.3E-10 79.4 2.2 30 226-255 19-48 (235)
145 3iby_A Ferrous iron transport 97.9 1.6E-05 5.6E-10 77.7 6.9 54 232-286 3-59 (256)
146 2cvh_A DNA repair and recombin 97.9 2E-05 6.7E-10 74.0 7.2 27 226-252 16-42 (220)
147 2yhs_A FTSY, cell division pro 97.9 2.5E-06 8.4E-11 91.0 0.9 39 226-264 289-329 (503)
148 3i8s_A Ferrous iron transport 97.9 2E-05 6.7E-10 77.8 7.2 56 231-287 4-62 (274)
149 1s96_A Guanylate kinase, GMP k 97.9 5E-06 1.7E-10 79.6 2.8 30 226-255 12-41 (219)
150 3lxw_A GTPase IMAP family memb 97.8 1.4E-05 4.9E-10 77.5 5.8 58 230-287 21-82 (247)
151 2ohf_A Protein OLA1, GTP-bindi 97.8 1.4E-05 4.6E-10 83.2 5.8 60 227-287 19-98 (396)
152 4dhe_A Probable GTP-binding pr 97.8 4E-05 1.4E-09 72.0 8.5 71 77-150 111-193 (223)
153 2wji_A Ferrous iron transport 97.8 1.6E-05 5.5E-10 71.4 5.5 55 231-286 4-61 (165)
154 1pzn_A RAD51, DNA repair and r 97.8 1.5E-05 5.1E-10 81.7 5.7 29 226-254 127-155 (349)
155 3a1s_A Iron(II) transport prot 97.8 2E-05 7E-10 77.1 6.4 55 231-286 6-63 (258)
156 3lxx_A GTPase IMAP family memb 97.8 1.9E-05 6.4E-10 75.8 6.0 60 230-289 29-92 (239)
157 1jal_A YCHF protein; nucleotid 97.8 1.7E-05 5.8E-10 81.6 6.0 57 230-287 2-78 (363)
158 3gee_A MNME, tRNA modification 97.8 1.3E-05 4.4E-10 85.5 5.2 59 229-287 232-293 (476)
159 2r6f_A Excinuclease ABC subuni 97.8 3.2E-06 1.1E-10 96.4 0.3 98 322-424 488-598 (972)
160 4dhe_A Probable GTP-binding pr 97.8 1.9E-05 6.4E-10 74.3 5.6 60 230-289 29-93 (223)
161 3a00_A Guanylate kinase, GMP k 97.8 5.7E-06 2E-10 76.6 2.0 26 230-255 1-26 (186)
162 3b1v_A Ferrous iron uptake tra 97.8 1.8E-05 6.2E-10 78.2 5.6 55 231-286 4-60 (272)
163 3e70_C DPA, signal recognition 97.8 4.4E-06 1.5E-10 84.9 1.1 38 228-265 127-166 (328)
164 1lvg_A Guanylate kinase, GMP k 97.8 7.8E-06 2.7E-10 76.7 2.5 27 229-255 3-29 (198)
165 2wjg_A FEOB, ferrous iron tran 97.7 3.8E-05 1.3E-09 69.9 6.7 56 230-286 7-65 (188)
166 3lnc_A Guanylate kinase, GMP k 97.7 7.3E-06 2.5E-10 78.4 1.8 30 226-255 23-53 (231)
167 3euj_A Chromosome partition pr 97.7 7.8E-06 2.7E-10 87.1 2.1 40 226-266 26-67 (483)
168 3pqc_A Probable GTP-binding pr 97.7 5.8E-05 2E-09 68.8 7.4 77 72-150 95-176 (195)
169 1mky_A Probable GTP-binding pr 97.7 2.6E-05 9E-10 82.2 5.4 56 232-287 3-61 (439)
170 2qu8_A Putative nucleolar GTP- 97.7 0.00035 1.2E-08 66.1 12.9 78 73-150 100-187 (228)
171 2ygr_A Uvrabc system protein A 97.7 6.2E-06 2.1E-10 94.3 0.6 96 322-422 505-613 (993)
172 3cph_A RAS-related protein SEC 97.7 5.8E-05 2E-09 70.1 6.8 72 77-150 88-164 (213)
173 2nzj_A GTP-binding protein REM 97.7 4E-05 1.4E-09 68.6 5.5 56 231-286 5-63 (175)
174 2kjq_A DNAA-related protein; s 97.7 2.8E-05 9.6E-10 69.7 4.3 58 229-286 35-95 (149)
175 2j41_A Guanylate kinase; GMP, 97.7 2.1E-05 7.3E-10 73.1 3.6 29 227-255 3-31 (207)
176 2cxx_A Probable GTP-binding pr 97.7 4E-05 1.4E-09 69.6 5.4 54 232-287 3-56 (190)
177 3t5d_A Septin-7; GTP-binding p 97.6 4.4E-05 1.5E-09 75.1 5.9 56 231-286 9-76 (274)
178 1kgd_A CASK, peripheral plasma 97.6 1.8E-05 6.1E-10 72.8 2.8 27 229-255 4-30 (180)
179 1in4_A RUVB, holliday junction 97.6 1.9E-06 6.7E-11 87.5 -4.2 110 231-346 52-170 (334)
180 1f5n_A Interferon-induced guan 97.6 4.5E-05 1.5E-09 83.3 6.3 58 230-289 38-105 (592)
181 1h65_A Chloroplast outer envel 97.6 5E-05 1.7E-09 74.5 5.7 56 231-286 40-98 (270)
182 3def_A T7I23.11 protein; chlor 97.6 5.3E-05 1.8E-09 74.0 5.7 58 230-287 36-96 (262)
183 1wxq_A GTP-binding protein; st 97.6 4.5E-05 1.5E-09 79.5 5.2 35 232-267 2-36 (397)
184 3cb4_D GTP-binding protein LEP 97.6 7.1E-05 2.4E-09 82.0 7.0 79 70-150 83-164 (599)
185 2dyk_A GTP-binding protein; GT 97.6 5.3E-05 1.8E-09 66.8 5.0 55 232-286 3-60 (161)
186 2vf7_A UVRA2, excinuclease ABC 97.6 9.1E-06 3.1E-10 92.1 -0.2 96 324-424 365-473 (842)
187 2h57_A ADP-ribosylation factor 97.6 6.4E-05 2.2E-09 68.8 5.5 72 77-150 86-169 (190)
188 4bas_A ADP-ribosylation factor 97.6 0.00011 3.8E-09 67.3 7.0 71 78-150 83-171 (199)
189 3iev_A GTP-binding protein ERA 97.6 9.4E-05 3.2E-09 74.2 7.0 79 70-150 81-164 (308)
190 1z0f_A RAB14, member RAS oncog 97.6 0.00014 4.8E-09 65.1 7.5 72 77-150 83-160 (179)
191 2xtp_A GTPase IMAP family memb 97.6 6.2E-05 2.1E-09 73.0 5.4 60 230-289 22-85 (260)
192 1sq5_A Pantothenate kinase; P- 97.6 3E-05 1E-09 77.9 3.1 35 227-261 77-115 (308)
193 4eun_A Thermoresistant glucoki 97.6 2.6E-05 8.7E-10 72.9 2.5 34 228-263 27-60 (200)
194 3t1o_A Gliding protein MGLA; G 97.6 0.00014 4.7E-09 66.3 7.4 73 78-150 94-174 (198)
195 2hjg_A GTP-binding protein ENG 97.6 3.2E-05 1.1E-09 81.5 3.5 56 232-287 5-63 (436)
196 1svi_A GTP-binding protein YSX 97.5 0.0002 6.7E-09 65.5 8.3 69 80-150 104-177 (195)
197 1lnz_A SPO0B-associated GTP-bi 97.5 9.4E-05 3.2E-09 75.5 6.7 79 71-150 226-312 (342)
198 3t5g_A GTP-binding protein RHE 97.5 4.2E-05 1.4E-09 69.2 3.6 71 78-150 74-151 (181)
199 3bc1_A RAS-related protein RAB 97.5 9.9E-05 3.4E-09 66.9 6.1 72 77-150 89-167 (195)
200 2f7s_A C25KG, RAS-related prot 97.5 0.00017 5.9E-09 67.4 7.9 73 76-150 102-181 (217)
201 1xzp_A Probable tRNA modificat 97.5 4.8E-05 1.6E-09 81.2 4.3 58 229-286 242-302 (482)
202 3sjy_A Translation initiation 97.5 0.00024 8.4E-09 73.8 9.6 79 70-150 87-174 (403)
203 1r8s_A ADP-ribosylation factor 97.5 0.00017 6E-09 63.7 7.2 76 73-150 58-144 (164)
204 1wms_A RAB-9, RAB9, RAS-relate 97.5 0.0001 3.4E-09 66.1 5.6 56 231-286 8-67 (177)
205 3geh_A MNME, tRNA modification 97.5 2.3E-05 7.9E-10 83.3 1.5 58 229-286 223-283 (462)
206 2yc2_C IFT27, small RAB-relate 97.5 0.0002 6.9E-09 65.9 7.7 78 71-150 85-173 (208)
207 1fzq_A ADP-ribosylation factor 97.5 0.00013 4.5E-09 66.5 6.2 55 230-286 16-71 (181)
208 1ek0_A Protein (GTP-binding pr 97.5 8.4E-05 2.9E-09 65.9 4.7 56 231-286 4-63 (170)
209 3q72_A GTP-binding protein RAD 97.5 8E-05 2.7E-09 66.1 4.6 55 231-286 3-60 (166)
210 2efe_B Small GTP-binding prote 97.5 0.00017 5.8E-09 64.9 6.7 72 77-150 80-157 (181)
211 2e87_A Hypothetical protein PH 97.5 0.00082 2.8E-08 68.6 12.6 71 80-150 245-318 (357)
212 2qu8_A Putative nucleolar GTP- 97.5 0.00012 4.3E-09 69.3 6.0 56 230-286 29-87 (228)
213 3tau_A Guanylate kinase, GMP k 97.5 5.9E-05 2E-09 71.0 3.6 28 228-255 6-33 (208)
214 1zj6_A ADP-ribosylation factor 97.5 0.00025 8.6E-09 64.6 7.8 72 77-150 79-160 (187)
215 4ad8_A DNA repair protein RECN 97.4 3E-05 1E-09 83.5 1.6 72 336-413 394-473 (517)
216 1z0j_A RAB-22, RAS-related pro 97.4 8.8E-05 3E-09 65.8 4.4 56 231-286 7-66 (170)
217 1upt_A ARL1, ADP-ribosylation 97.4 0.00022 7.6E-09 63.4 7.1 72 77-150 70-151 (171)
218 2g6b_A RAS-related protein RAB 97.4 0.00018 6.3E-09 64.6 6.5 72 77-150 79-156 (180)
219 2gf9_A RAS-related protein RAB 97.4 0.0002 6.9E-09 65.3 6.8 72 77-150 90-167 (189)
220 2dyk_A GTP-binding protein; GT 97.4 0.00013 4.3E-09 64.3 5.1 75 71-150 69-144 (161)
221 1g16_A RAS-related protein SEC 97.4 0.00014 4.8E-09 64.5 5.4 56 231-286 4-63 (170)
222 3tkl_A RAS-related protein RAB 97.4 0.00025 8.5E-09 64.8 7.2 73 76-150 83-161 (196)
223 1upt_A ARL1, ADP-ribosylation 97.4 0.00011 3.8E-09 65.4 4.6 56 229-286 6-62 (171)
224 1moz_A ARL1, ADP-ribosylation 97.4 0.00023 7.8E-09 64.2 6.7 71 78-150 82-162 (183)
225 2vp4_A Deoxynucleoside kinase; 97.4 5.4E-05 1.8E-09 72.5 2.5 27 227-253 17-43 (230)
226 1lw7_A Transcriptional regulat 97.4 5.3E-05 1.8E-09 77.7 2.6 33 226-258 164-198 (365)
227 3ney_A 55 kDa erythrocyte memb 97.4 6.8E-05 2.3E-09 70.6 3.1 39 228-266 17-56 (197)
228 1z2a_A RAS-related protein RAB 97.4 0.00014 4.7E-09 64.4 5.0 56 231-286 6-65 (168)
229 3kta_B Chromosome segregation 97.4 4.3E-05 1.5E-09 70.5 1.6 69 335-408 61-138 (173)
230 2oap_1 GSPE-2, type II secreti 97.4 6.1E-05 2.1E-09 81.0 3.1 37 228-264 258-296 (511)
231 1ksh_A ARF-like protein 2; sma 97.4 0.00023 8E-09 64.5 6.6 72 77-150 81-162 (186)
232 1zd9_A ADP-ribosylation factor 97.4 0.00025 8.7E-09 64.8 6.8 72 77-150 86-167 (188)
233 2a9k_A RAS-related protein RAL 97.4 0.00025 8.4E-09 63.9 6.6 72 77-150 85-163 (187)
234 2h17_A ADP-ribosylation factor 97.4 0.00021 7.2E-09 64.8 6.1 72 77-150 84-165 (181)
235 1g16_A RAS-related protein SEC 97.4 0.0003 1E-08 62.3 6.9 72 77-150 71-147 (170)
236 2dby_A GTP-binding protein; GD 97.4 8.7E-05 3E-09 76.5 3.8 23 232-254 3-25 (368)
237 2y8e_A RAB-protein 6, GH09086P 97.3 0.00019 6.6E-09 64.2 5.6 72 77-150 82-159 (179)
238 1xzp_A Probable tRNA modificat 97.3 0.0003 1E-08 75.1 7.7 73 73-150 315-387 (482)
239 3gj0_A GTP-binding nuclear pro 97.3 0.00012 4E-09 68.9 4.0 71 78-150 84-157 (221)
240 3tw8_B RAS-related protein RAB 97.3 0.00013 4.3E-09 65.5 4.1 55 231-286 10-69 (181)
241 2hup_A RAS-related protein RAB 97.3 0.0004 1.4E-08 64.4 7.7 72 77-150 97-175 (201)
242 2hxs_A RAB-26, RAS-related pro 97.3 0.00025 8.6E-09 63.5 6.0 72 77-150 75-155 (178)
243 3clv_A RAB5 protein, putative; 97.3 0.00059 2E-08 62.1 8.6 72 77-150 112-186 (208)
244 1kao_A RAP2A; GTP-binding prot 97.3 0.00019 6.4E-09 63.2 5.0 24 231-254 4-27 (167)
245 4dcu_A GTP-binding protein ENG 97.3 0.00032 1.1E-08 74.1 7.7 79 70-150 264-351 (456)
246 3dz8_A RAS-related protein RAB 97.3 0.00097 3.3E-08 60.9 10.0 77 72-150 85-168 (191)
247 1z08_A RAS-related protein RAB 97.3 0.00019 6.5E-09 63.7 5.0 56 231-286 7-66 (170)
248 2qt1_A Nicotinamide riboside k 97.3 0.00022 7.6E-09 66.6 5.7 30 225-254 16-45 (207)
249 1jwy_B Dynamin A GTPase domain 97.3 0.00016 5.5E-09 71.9 5.0 24 231-254 25-48 (315)
250 1u8z_A RAS-related protein RAL 97.3 0.00024 8.2E-09 62.6 5.5 72 77-150 71-149 (168)
251 1ky3_A GTP-binding protein YPT 97.3 0.00018 6.1E-09 64.6 4.7 55 231-285 9-68 (182)
252 2fg5_A RAB-22B, RAS-related pr 97.3 0.00026 8.9E-09 65.0 5.9 72 77-150 91-168 (192)
253 2y8e_A RAB-protein 6, GH09086P 97.3 0.0002 6.8E-09 64.1 5.0 56 231-286 15-74 (179)
254 2a5j_A RAS-related protein RAB 97.3 0.00035 1.2E-08 64.0 6.7 72 77-150 89-166 (191)
255 2fu5_C RAS-related protein RAB 97.3 0.00043 1.5E-08 62.5 7.2 71 78-150 77-153 (183)
256 2aka_B Dynamin-1; fusion prote 97.3 9.7E-05 3.3E-09 72.8 3.0 26 230-255 26-51 (299)
257 1z2a_A RAS-related protein RAB 97.3 0.00034 1.2E-08 61.8 6.4 72 77-150 73-149 (168)
258 1r2q_A RAS-related protein RAB 97.3 0.00019 6.6E-09 63.4 4.7 56 231-286 7-66 (170)
259 1z0f_A RAB14, member RAS oncog 97.3 0.00019 6.3E-09 64.3 4.6 57 230-286 15-75 (179)
260 1wf3_A GTP-binding protein; GT 97.3 0.00023 7.9E-09 71.2 5.8 76 71-150 76-155 (301)
261 2o5v_A DNA replication and rep 97.3 8.8E-05 3E-09 76.2 2.7 74 338-422 265-352 (359)
262 2x77_A ADP-ribosylation factor 97.3 0.00038 1.3E-08 63.4 6.7 71 78-150 86-166 (189)
263 1zbd_A Rabphilin-3A; G protein 97.3 0.00043 1.5E-08 63.8 7.1 72 77-150 76-153 (203)
264 2zej_A Dardarin, leucine-rich 97.3 0.00021 7.3E-09 65.2 4.8 24 231-254 3-26 (184)
265 3clv_A RAB5 protein, putative; 97.3 0.00022 7.4E-09 65.0 4.9 25 230-254 7-31 (208)
266 2efe_B Small GTP-binding prote 97.3 0.00024 8.1E-09 63.9 5.0 56 231-286 13-72 (181)
267 2fg5_A RAB-22B, RAS-related pr 97.3 0.00022 7.4E-09 65.5 4.9 57 230-286 23-83 (192)
268 1qhl_A Protein (cell division 97.3 1.2E-05 4.2E-10 77.4 -3.8 35 231-265 28-64 (227)
269 2lkc_A Translation initiation 97.3 0.00032 1.1E-08 62.8 5.9 57 229-286 7-66 (178)
270 2bme_A RAB4A, RAS-related prot 97.3 0.0002 6.9E-09 64.8 4.5 57 230-286 10-70 (186)
271 3kta_A Chromosome segregation 97.2 0.00012 4E-09 66.9 3.0 28 227-255 24-51 (182)
272 2gf9_A RAS-related protein RAB 97.2 0.00025 8.5E-09 64.7 5.2 56 231-286 23-82 (189)
273 2il1_A RAB12; G-protein, GDP, 97.2 0.00023 7.8E-09 65.4 4.9 57 230-286 26-86 (192)
274 4djt_A GTP-binding nuclear pro 97.2 0.00066 2.3E-08 63.3 8.2 71 78-150 81-157 (218)
275 3tw8_B RAS-related protein RAB 97.2 0.00031 1.1E-08 62.9 5.7 71 78-150 78-153 (181)
276 1zbd_A Rabphilin-3A; G protein 97.2 0.00027 9.1E-09 65.2 5.4 56 231-286 9-68 (203)
277 2bcg_Y Protein YP2, GTP-bindin 97.2 0.00026 8.8E-09 65.6 5.2 56 231-286 9-68 (206)
278 2h17_A ADP-ribosylation factor 97.2 0.00037 1.2E-08 63.2 6.1 56 229-286 20-76 (181)
279 1z06_A RAS-related protein RAB 97.2 0.00027 9.2E-09 64.5 5.3 56 231-286 21-80 (189)
280 2b6h_A ADP-ribosylation factor 97.2 0.0005 1.7E-08 63.3 7.1 72 77-150 92-173 (192)
281 2p5s_A RAS and EF-hand domain 97.2 0.00029 9.8E-09 65.0 5.5 57 230-286 28-88 (199)
282 3cph_A RAS-related protein SEC 97.2 0.00025 8.4E-09 65.8 5.0 59 228-286 18-80 (213)
283 2a5j_A RAS-related protein RAB 97.2 0.0003 1E-08 64.4 5.5 57 230-286 21-81 (191)
284 3r7w_A Gtpase1, GTP-binding pr 97.2 0.00019 6.7E-09 71.8 4.5 57 230-286 3-63 (307)
285 3uie_A Adenylyl-sulfate kinase 97.2 0.00014 4.9E-09 67.7 3.3 28 228-255 23-50 (200)
286 3tkl_A RAS-related protein RAB 97.2 0.00025 8.4E-09 64.8 4.9 56 231-286 17-76 (196)
287 2x8a_A Nuclear valosin-contain 97.2 0.00014 4.8E-09 71.7 3.4 37 227-265 43-79 (274)
288 1zj6_A ADP-ribosylation factor 97.2 0.00044 1.5E-08 62.9 6.5 55 230-286 16-71 (187)
289 2o52_A RAS-related protein RAB 97.2 0.00031 1.1E-08 65.0 5.6 57 230-286 25-85 (200)
290 1vg8_A RAS-related protein RAB 97.2 0.00024 8.1E-09 65.6 4.7 57 230-286 8-68 (207)
291 1u8z_A RAS-related protein RAL 97.2 0.00029 9.8E-09 62.1 5.0 24 231-254 5-28 (168)
292 2p67_A LAO/AO transport system 97.2 0.00014 4.7E-09 74.1 3.3 28 227-254 53-80 (341)
293 2oil_A CATX-8, RAS-related pro 97.2 0.00026 9E-09 64.7 4.9 57 230-286 25-85 (193)
294 1moz_A ARL1, ADP-ribosylation 97.2 0.00019 6.5E-09 64.8 3.9 56 229-286 17-73 (183)
295 3c5h_A Glucocorticoid receptor 97.2 0.00096 3.3E-08 64.7 9.1 68 81-150 162-237 (255)
296 2ged_A SR-beta, signal recogni 97.2 0.00019 6.5E-09 65.5 3.9 54 229-286 47-102 (193)
297 1knq_A Gluconate kinase; ALFA/ 97.2 0.00016 5.4E-09 65.6 3.2 27 228-254 6-32 (175)
298 2iwr_A Centaurin gamma 1; ANK 97.2 0.0012 4.3E-08 59.1 9.3 70 77-150 68-151 (178)
299 2ce2_X GTPase HRAS; signaling 97.2 0.00062 2.1E-08 59.6 7.0 71 78-150 71-147 (166)
300 3q85_A GTP-binding protein REM 97.2 0.00037 1.3E-08 61.8 5.6 24 232-255 4-27 (169)
301 2g6b_A RAS-related protein RAB 97.2 0.00032 1.1E-08 62.9 5.2 57 230-286 10-71 (180)
302 1ksh_A ARF-like protein 2; sma 97.2 0.00026 9E-09 64.2 4.7 56 229-286 17-73 (186)
303 1rz3_A Hypothetical protein rb 97.2 0.00038 1.3E-08 65.0 5.8 29 227-255 19-47 (201)
304 4dsu_A GTPase KRAS, isoform 2B 97.2 0.00031 1.1E-08 63.5 5.1 24 231-254 5-28 (189)
305 1f6b_A SAR1; gtpases, N-termin 97.2 0.00026 8.8E-09 65.6 4.5 54 231-286 26-80 (198)
306 1c1y_A RAS-related protein RAP 97.2 0.00069 2.4E-08 59.7 7.2 72 77-150 70-149 (167)
307 2fn4_A P23, RAS-related protei 97.2 0.00045 1.5E-08 61.8 6.0 71 78-150 77-154 (181)
308 1x3s_A RAS-related protein RAB 97.2 0.00029 9.9E-09 64.1 4.7 56 231-286 16-75 (195)
309 2il1_A RAB12; G-protein, GDP, 97.2 0.00036 1.2E-08 64.1 5.4 72 77-150 94-172 (192)
310 1kk1_A EIF2gamma; initiation o 97.2 0.0011 3.8E-08 69.0 9.7 79 70-150 95-182 (410)
311 2bcg_Y Protein YP2, GTP-bindin 97.2 0.0006 2.1E-08 63.0 7.0 72 77-150 76-153 (206)
312 2www_A Methylmalonic aciduria 97.2 0.00016 5.5E-09 73.9 3.2 25 229-253 73-97 (349)
313 2oil_A CATX-8, RAS-related pro 97.2 0.00053 1.8E-08 62.6 6.5 72 77-150 93-170 (193)
314 3q85_A GTP-binding protein REM 97.2 0.00077 2.6E-08 59.7 7.3 71 78-150 72-149 (169)
315 1kao_A RAP2A; GTP-binding prot 97.2 0.00042 1.4E-08 60.9 5.5 72 77-150 70-148 (167)
316 1z0j_A RAB-22, RAS-related pro 97.2 0.00064 2.2E-08 60.1 6.7 72 77-150 74-151 (170)
317 1vg8_A RAS-related protein RAB 97.2 0.00044 1.5E-08 63.7 5.8 71 78-150 77-157 (207)
318 4e22_A Cytidylate kinase; P-lo 97.1 0.00022 7.4E-09 69.3 3.8 33 228-260 25-62 (252)
319 2bov_A RAla, RAS-related prote 97.1 0.00084 2.9E-08 61.7 7.7 72 77-150 81-159 (206)
320 2ew1_A RAS-related protein RAB 97.1 0.00033 1.1E-08 65.3 4.9 55 231-285 27-85 (201)
321 1wb1_A Translation elongation 97.1 0.0012 4E-08 70.4 9.7 78 70-150 85-171 (482)
322 3kkq_A RAS-related protein M-R 97.1 0.0013 4.3E-08 59.3 8.6 72 77-150 85-163 (183)
323 2o52_A RAS-related protein RAB 97.1 0.00044 1.5E-08 64.0 5.6 72 77-150 93-170 (200)
324 1kag_A SKI, shikimate kinase I 97.1 0.00017 5.6E-09 65.1 2.6 26 230-255 4-29 (173)
325 2ce2_X GTPase HRAS; signaling 97.1 0.00042 1.4E-08 60.8 5.2 23 232-254 5-27 (166)
326 3ec2_A DNA replication protein 97.1 0.00014 4.8E-09 66.4 2.1 29 227-255 35-63 (180)
327 4dsu_A GTPase KRAS, isoform 2B 97.1 0.00094 3.2E-08 60.2 7.7 71 78-150 72-148 (189)
328 2erx_A GTP-binding protein DI- 97.1 0.00029 9.8E-09 62.5 4.1 24 231-254 4-27 (172)
329 2nzj_A GTP-binding protein REM 97.1 0.00061 2.1E-08 60.7 6.3 71 78-150 74-151 (175)
330 2p5s_A RAS and EF-hand domain 97.1 0.00072 2.5E-08 62.3 6.9 72 77-150 96-179 (199)
331 1ek0_A Protein (GTP-binding pr 97.1 0.00027 9.1E-09 62.5 3.8 72 77-150 71-151 (170)
332 1r2q_A RAS-related protein RAB 97.1 0.00029 9.9E-09 62.3 4.0 72 77-150 74-151 (170)
333 3con_A GTPase NRAS; structural 97.1 0.00058 2E-08 62.1 6.2 72 77-150 88-165 (190)
334 3bwd_D RAC-like GTP-binding pr 97.1 0.00031 1E-08 63.2 4.2 71 78-150 76-163 (182)
335 1zun_B Sulfate adenylate trans 97.1 0.0011 3.7E-08 69.6 9.0 83 71-162 117-212 (434)
336 1m2o_B GTP-binding protein SAR 97.1 0.00034 1.2E-08 64.3 4.5 54 231-286 24-78 (190)
337 3bc1_A RAS-related protein RAB 97.1 0.00036 1.2E-08 63.2 4.6 24 231-254 12-35 (195)
338 1n0w_A DNA repair protein RAD5 97.1 0.00026 8.9E-09 67.2 3.8 26 227-252 21-46 (243)
339 3reg_A RHO-like small GTPase; 97.1 0.00035 1.2E-08 64.0 4.5 73 78-150 91-170 (194)
340 1mh1_A RAC1; GTP-binding, GTPa 97.1 0.00028 9.5E-09 63.6 3.7 73 78-150 73-162 (186)
341 2gj8_A MNME, tRNA modification 97.1 0.00013 4.3E-09 66.2 1.4 73 73-150 75-148 (172)
342 1c1y_A RAS-related protein RAP 97.1 0.0004 1.4E-08 61.3 4.5 24 231-254 4-27 (167)
343 2gco_A H9, RHO-related GTP-bin 97.1 0.00037 1.3E-08 64.5 4.5 51 78-128 93-145 (201)
344 3cpj_B GTP-binding protein YPT 97.1 0.00052 1.8E-08 64.6 5.5 56 231-286 14-73 (223)
345 1fzq_A ADP-ribosylation factor 97.1 0.00096 3.3E-08 60.6 7.1 72 77-150 79-160 (181)
346 2x77_A ADP-ribosylation factor 97.1 0.00039 1.3E-08 63.3 4.5 56 229-286 21-77 (189)
347 2hxs_A RAB-26, RAS-related pro 97.1 0.00029 1E-08 63.1 3.6 56 231-286 7-67 (178)
348 3t1o_A Gliding protein MGLA; G 97.1 0.00051 1.7E-08 62.4 5.2 25 231-255 15-39 (198)
349 2j1l_A RHO-related GTP-binding 97.1 0.00057 2E-08 64.0 5.7 71 78-150 102-191 (214)
350 1z08_A RAS-related protein RAB 97.1 0.00046 1.6E-08 61.2 4.8 71 78-150 75-151 (170)
351 3llu_A RAS-related GTP-binding 97.0 0.00099 3.4E-08 61.3 7.1 74 77-150 91-180 (196)
352 3t5g_A GTP-binding protein RHE 97.0 0.00057 2E-08 61.5 5.3 55 231-286 7-65 (181)
353 3dz8_A RAS-related protein RAB 97.0 0.00032 1.1E-08 64.2 3.6 56 230-285 23-82 (191)
354 1nij_A Hypothetical protein YJ 97.0 0.00017 5.8E-09 72.7 2.0 24 231-254 5-28 (318)
355 3gj0_A GTP-binding nuclear pro 97.0 0.00029 1E-08 66.1 3.4 57 230-286 15-75 (221)
356 2a9k_A RAS-related protein RAL 97.0 0.00051 1.7E-08 61.8 4.9 25 230-254 18-42 (187)
357 3t34_A Dynamin-related protein 97.0 0.00047 1.6E-08 70.4 5.2 22 232-253 36-57 (360)
358 2atx_A Small GTP binding prote 97.0 0.00057 2E-08 62.5 5.3 48 78-127 86-137 (194)
359 2fn4_A P23, RAS-related protei 97.0 0.00052 1.8E-08 61.4 4.9 25 230-254 9-33 (181)
360 2lkc_A Translation initiation 97.0 0.0014 4.9E-08 58.5 7.9 48 77-127 74-122 (178)
361 3q72_A GTP-binding protein RAD 97.0 0.00093 3.2E-08 59.0 6.5 71 78-150 69-146 (166)
362 2hup_A RAS-related protein RAB 97.0 0.0006 2E-08 63.2 5.4 57 230-286 29-89 (201)
363 2bme_A RAB4A, RAS-related prot 97.0 0.00039 1.3E-08 62.9 4.0 72 77-150 78-155 (186)
364 1ky3_A GTP-binding protein YPT 97.0 0.0012 4E-08 59.1 7.2 69 78-150 78-160 (182)
365 2f7s_A C25KG, RAS-related prot 97.0 0.00055 1.9E-08 63.8 5.2 25 231-255 26-50 (217)
366 3con_A GTPase NRAS; structural 97.0 0.00055 1.9E-08 62.2 5.0 24 231-254 22-45 (190)
367 2bov_A RAla, RAS-related prote 97.0 0.00048 1.7E-08 63.3 4.6 25 230-254 14-38 (206)
368 1r8s_A ADP-ribosylation factor 97.0 0.00051 1.7E-08 60.6 4.5 53 232-286 2-55 (164)
369 2b6h_A ADP-ribosylation factor 97.0 0.00085 2.9E-08 61.7 6.1 56 229-286 28-84 (192)
370 2h57_A ADP-ribosylation factor 97.0 0.0004 1.4E-08 63.4 3.9 56 229-286 20-78 (190)
371 3p26_A Elongation factor 1 alp 97.0 0.0015 5E-08 69.7 8.6 87 70-162 123-226 (483)
372 4djt_A GTP-binding nuclear pro 97.0 0.00034 1.2E-08 65.3 3.2 57 230-286 11-72 (218)
373 4bas_A ADP-ribosylation factor 97.0 0.00052 1.8E-08 62.7 4.3 56 229-286 16-74 (199)
374 1wms_A RAB-9, RAB9, RAS-relate 97.0 0.00099 3.4E-08 59.5 6.1 72 77-150 75-156 (177)
375 3j2k_7 ERF3, eukaryotic polype 97.0 0.0033 1.1E-07 66.1 11.0 87 70-162 107-213 (439)
376 1s0u_A EIF-2-gamma, translatio 97.0 0.0015 5E-08 68.1 8.2 79 70-150 93-180 (408)
377 3q3j_B RHO-related GTP-binding 97.0 0.001 3.4E-08 62.5 6.3 69 78-150 95-184 (214)
378 2erx_A GTP-binding protein DI- 96.9 0.00086 3E-08 59.3 5.5 73 78-150 71-149 (172)
379 1sxj_E Activator 1 40 kDa subu 96.9 0.00092 3.1E-08 67.4 6.3 32 233-264 39-73 (354)
380 2qpt_A EH domain-containing pr 96.9 0.00055 1.9E-08 74.2 4.9 54 232-285 67-164 (550)
381 4gzl_A RAS-related C3 botulinu 96.9 0.00046 1.6E-08 64.1 3.7 73 78-150 98-187 (204)
382 2x2e_A Dynamin-1; nitration, h 96.9 0.00025 8.4E-09 72.4 1.9 24 231-254 32-55 (353)
383 1ixz_A ATP-dependent metallopr 96.9 0.00031 1.1E-08 67.7 2.6 36 227-264 48-83 (254)
384 3cbq_A GTP-binding protein REM 96.9 0.0024 8.3E-08 58.8 8.5 71 78-150 93-170 (195)
385 2fv8_A H6, RHO-related GTP-bin 96.9 0.00064 2.2E-08 63.1 4.5 51 78-128 93-145 (207)
386 2fv8_A H6, RHO-related GTP-bin 96.9 0.00095 3.3E-08 62.0 5.6 55 231-286 26-84 (207)
387 3gee_A MNME, tRNA modification 96.9 0.0017 5.7E-08 69.2 8.2 72 76-150 307-380 (476)
388 3kkq_A RAS-related protein M-R 96.9 0.00082 2.8E-08 60.6 5.0 25 230-254 18-42 (183)
389 2atv_A RERG, RAS-like estrogen 96.9 0.0013 4.3E-08 60.4 6.3 72 77-150 94-172 (196)
390 2gf0_A GTP-binding protein DI- 96.9 0.0019 6.4E-08 58.9 7.4 73 78-150 76-153 (199)
391 3ihw_A Centg3; RAS, centaurin, 96.9 0.0027 9.2E-08 57.9 8.4 68 78-150 82-162 (184)
392 2j0v_A RAC-like GTP-binding pr 96.9 0.00066 2.2E-08 63.1 4.2 71 78-150 77-162 (212)
393 1m2o_B GTP-binding protein SAR 96.9 0.001 3.6E-08 61.0 5.6 59 78-138 87-150 (190)
394 2j69_A Bacterial dynamin-like 96.9 0.00064 2.2E-08 75.8 4.8 27 229-255 68-94 (695)
395 3th5_A RAS-related C3 botulinu 95.9 0.00016 5.5E-09 67.0 0.0 49 78-127 98-149 (204)
396 1z06_A RAS-related protein RAB 96.9 0.00087 3E-08 61.1 4.9 72 77-150 89-167 (189)
397 3cpj_B GTP-binding protein YPT 96.9 0.00052 1.8E-08 64.7 3.5 71 78-150 82-158 (223)
398 1zd9_A ADP-ribosylation factor 96.9 0.00066 2.2E-08 62.0 4.0 56 229-286 21-78 (188)
399 2qag_A Septin-2, protein NEDD5 96.8 0.00048 1.6E-08 70.7 3.4 53 233-285 40-105 (361)
400 1f6b_A SAR1; gtpases, N-termin 96.8 0.0016 5.3E-08 60.3 6.6 47 78-126 89-140 (198)
401 1nrj_B SR-beta, signal recogni 96.8 0.00086 2.9E-08 62.5 4.9 53 230-286 12-66 (218)
402 1mh1_A RAC1; GTP-binding, GTPa 96.8 0.00081 2.8E-08 60.5 4.5 24 231-254 6-29 (186)
403 3llu_A RAS-related GTP-binding 96.8 0.0012 4E-08 60.8 5.5 57 230-286 20-80 (196)
404 3oes_A GTPase rhebl1; small GT 96.8 0.00084 2.9E-08 61.9 4.6 71 78-150 92-169 (201)
405 1iy2_A ATP-dependent metallopr 96.8 0.00043 1.5E-08 67.9 2.6 36 227-264 72-107 (278)
406 2gf0_A GTP-binding protein DI- 96.8 0.0008 2.8E-08 61.4 4.3 25 230-254 8-32 (199)
407 2q3h_A RAS homolog gene family 96.8 0.0011 3.8E-08 60.9 5.2 47 78-126 88-138 (201)
408 2j1l_A RHO-related GTP-binding 96.8 0.0012 4E-08 61.8 5.5 25 230-254 34-58 (214)
409 1udx_A The GTP-binding protein 96.8 0.005 1.7E-07 64.4 10.8 73 74-150 228-307 (416)
410 2fu5_C RAS-related protein RAB 96.8 0.00033 1.1E-08 63.3 1.5 25 230-254 8-32 (183)
411 3bwd_D RAC-like GTP-binding pr 96.8 0.0009 3.1E-08 60.1 4.4 25 230-254 8-32 (182)
412 2yc2_C IFT27, small RAB-relate 96.8 0.00051 1.8E-08 63.1 2.8 24 230-253 20-43 (208)
413 1lnz_A SPO0B-associated GTP-bi 96.8 0.0004 1.4E-08 70.9 2.2 54 232-286 160-217 (342)
414 3reg_A RHO-like small GTPase; 96.8 0.00074 2.5E-08 61.8 3.8 25 230-254 23-47 (194)
415 3tqc_A Pantothenate kinase; bi 96.8 0.00055 1.9E-08 69.2 3.1 27 229-255 91-117 (321)
416 2ew1_A RAS-related protein RAB 96.8 0.00081 2.8E-08 62.6 4.1 72 77-150 94-171 (201)
417 2fh5_B SR-beta, signal recogni 96.8 0.0011 3.7E-08 61.7 4.9 54 231-286 8-65 (214)
418 3q5d_A Atlastin-1; G protein, 96.8 0.00081 2.8E-08 71.0 4.4 23 231-253 68-90 (447)
419 2gco_A H9, RHO-related GTP-bin 96.8 0.0014 4.8E-08 60.5 5.5 55 231-286 26-84 (201)
420 3oes_A GTPase rhebl1; small GT 96.7 0.00087 3E-08 61.8 4.0 27 229-255 23-49 (201)
421 3vaa_A Shikimate kinase, SK; s 96.7 0.0007 2.4E-08 62.9 3.2 28 227-254 22-49 (199)
422 1m7b_A RND3/RHOE small GTP-bin 96.7 0.00073 2.5E-08 61.4 3.2 24 231-254 8-31 (184)
423 1cke_A CK, MSSA, protein (cyti 96.7 0.00075 2.6E-08 63.6 3.4 25 230-254 5-29 (227)
424 2atv_A RERG, RAS-like estrogen 96.7 0.0015 5.2E-08 59.9 5.4 57 230-287 28-88 (196)
425 1svm_A Large T antigen; AAA+ f 96.7 0.00074 2.5E-08 69.8 3.5 29 226-254 165-193 (377)
426 1jjv_A Dephospho-COA kinase; P 96.7 0.00076 2.6E-08 62.7 3.2 22 231-252 3-24 (206)
427 2c78_A Elongation factor TU-A; 96.7 0.0023 7.9E-08 66.4 7.2 79 70-151 87-177 (405)
428 2q3h_A RAS homolog gene family 96.7 0.0015 5.2E-08 59.9 5.1 56 229-286 19-79 (201)
429 3c5c_A RAS-like protein 12; GD 96.7 0.0029 1E-07 57.7 7.0 72 76-149 86-166 (187)
430 1ega_A Protein (GTP-binding pr 96.7 0.0022 7.4E-08 64.0 6.5 72 75-150 82-157 (301)
431 2qor_A Guanylate kinase; phosp 96.7 0.00086 2.9E-08 62.6 3.3 28 227-254 9-36 (204)
432 4gzl_A RAS-related C3 botulinu 96.6 0.0013 4.5E-08 61.0 4.5 26 229-254 29-54 (204)
433 3ihw_A Centg3; RAS, centaurin, 96.6 0.0021 7.1E-08 58.7 5.8 25 230-254 20-44 (184)
434 3r7w_A Gtpase1, GTP-binding pr 96.6 0.0033 1.1E-07 62.7 7.6 72 77-150 76-164 (307)
435 3qq5_A Small GTP-binding prote 96.6 0.0012 4.1E-08 69.3 4.5 72 73-150 105-178 (423)
436 2fh5_B SR-beta, signal recogni 96.6 0.0024 8.2E-08 59.3 6.1 53 75-128 71-131 (214)
437 1gwn_A RHO-related GTP-binding 96.6 0.0024 8.3E-08 59.5 6.1 47 78-126 96-146 (205)
438 2iwr_A Centaurin gamma 1; ANK 96.6 0.0013 4.5E-08 58.9 4.1 55 231-286 8-65 (178)
439 3o47_A ADP-ribosylation factor 96.6 0.0034 1.2E-07 63.4 7.6 72 77-150 228-309 (329)
440 1w1w_A Structural maintenance 96.6 0.00076 2.6E-08 70.6 2.8 68 338-409 333-409 (430)
441 1jny_A EF-1-alpha, elongation 96.6 0.0031 1.1E-07 66.2 7.4 81 70-150 96-195 (435)
442 2cjw_A GTP-binding protein GEM 96.6 0.0015 5.1E-08 60.2 4.4 23 231-253 7-29 (192)
443 2pez_A Bifunctional 3'-phospho 96.6 0.00099 3.4E-08 60.6 3.1 26 229-254 4-29 (179)
444 3qq5_A Small GTP-binding prote 96.6 0.00053 1.8E-08 71.9 1.3 57 230-286 34-94 (423)
445 3cbq_A GTP-binding protein REM 96.6 0.001 3.5E-08 61.5 3.1 25 230-254 23-47 (195)
446 3l0i_B RAS-related protein RAB 96.6 0.00027 9.3E-09 65.2 -0.9 57 230-286 33-93 (199)
447 2if2_A Dephospho-COA kinase; a 96.6 0.001 3.5E-08 61.7 3.0 21 232-252 3-23 (204)
448 2atx_A Small GTP binding prote 96.5 0.0017 6E-08 59.1 4.6 24 231-254 19-42 (194)
449 2o5v_A DNA replication and rep 96.5 0.00093 3.2E-08 68.6 2.9 26 226-252 23-48 (359)
450 3c5c_A RAS-like protein 12; GD 96.5 0.0014 4.8E-08 59.8 3.8 25 230-254 21-45 (187)
451 2j0v_A RAC-like GTP-binding pr 96.5 0.0022 7.4E-08 59.5 5.0 56 230-286 9-68 (212)
452 1r5b_A Eukaryotic peptide chai 96.5 0.0046 1.6E-07 65.5 8.1 87 70-162 133-240 (467)
453 3p32_A Probable GTPase RV1496/ 96.5 0.0032 1.1E-07 64.2 6.5 68 77-150 188-266 (355)
454 1f2t_A RAD50 ABC-ATPase; DNA d 96.5 0.0014 4.8E-08 58.5 3.2 22 231-252 24-45 (149)
455 1gwn_A RHO-related GTP-binding 96.5 0.0013 4.5E-08 61.3 3.1 25 230-254 28-52 (205)
456 2wkq_A NPH1-1, RAS-related C3 96.4 0.0018 6.1E-08 64.3 4.2 73 78-150 223-312 (332)
457 2px0_A Flagellar biosynthesis 96.4 0.0015 5E-08 65.2 3.5 28 228-255 103-130 (296)
458 2p5t_B PEZT; postsegregational 96.4 0.0028 9.5E-08 61.4 5.4 37 227-263 29-65 (253)
459 1d2e_A Elongation factor TU (E 96.4 0.0046 1.6E-07 64.0 7.4 79 70-151 78-168 (397)
460 1m7b_A RND3/RHOE small GTP-bin 96.4 0.0026 8.7E-08 57.7 4.9 47 78-126 75-125 (184)
461 3auy_A DNA double-strand break 96.4 0.00089 3E-08 68.8 1.8 73 336-409 278-358 (371)
462 3l0i_B RAS-related protein RAB 96.4 0.00041 1.4E-08 64.0 -0.7 71 78-150 102-178 (199)
463 2ywe_A GTP-binding protein LEP 96.4 0.0078 2.7E-07 65.8 9.3 76 70-150 85-166 (600)
464 3lvq_E ARF-GAP with SH3 domain 96.4 0.0034 1.1E-07 66.8 6.2 72 77-150 385-466 (497)
465 2qtf_A Protein HFLX, GTP-bindi 96.4 0.0062 2.1E-07 62.5 7.9 58 70-127 246-307 (364)
466 3cr8_A Sulfate adenylyltranfer 96.4 0.00092 3.1E-08 72.5 1.8 30 226-255 365-394 (552)
467 2g3y_A GTP-binding protein GEM 96.4 0.0038 1.3E-07 58.9 5.9 24 231-254 38-61 (211)
468 3dpu_A RAB family protein; roc 96.4 0.0031 1E-07 67.9 5.9 68 78-150 118-190 (535)
469 1wxq_A GTP-binding protein; st 96.4 0.0032 1.1E-07 65.4 5.8 41 112-152 214-254 (397)
470 3izq_1 HBS1P, elongation facto 96.3 0.0065 2.2E-07 66.6 8.2 86 71-162 258-360 (611)
471 1w1w_A Structural maintenance 96.3 0.00094 3.2E-08 69.9 1.5 29 227-255 23-51 (430)
472 3izq_1 HBS1P, elongation facto 96.3 0.0034 1.2E-07 68.8 5.9 26 228-253 165-190 (611)
473 1odf_A YGR205W, hypothetical 3 96.3 0.0019 6.5E-08 64.3 3.2 121 228-372 29-168 (290)
474 2cxx_A Probable GTP-binding pr 96.3 0.012 4.3E-07 52.8 8.5 71 79-150 80-166 (190)
475 3cm0_A Adenylate kinase; ATP-b 96.3 0.002 6.7E-08 58.6 3.0 24 229-252 3-26 (186)
476 3nwj_A ATSK2; P loop, shikimat 96.2 0.0012 4.2E-08 64.2 1.6 25 230-254 48-72 (250)
477 3t5d_A Septin-7; GTP-binding p 96.2 0.0064 2.2E-07 59.4 6.8 66 82-150 116-186 (274)
478 3i8s_A Ferrous iron transport 96.2 0.00083 2.9E-08 66.0 0.4 66 78-150 82-151 (274)
479 2yvu_A Probable adenylyl-sulfa 96.2 0.0025 8.5E-08 58.2 3.6 29 227-255 10-38 (186)
480 1f60_A Elongation factor EEF1A 96.2 0.0043 1.5E-07 65.6 5.8 81 70-150 97-194 (458)
481 1vma_A Cell division protein F 96.2 0.0022 7.7E-08 64.3 3.4 29 227-255 101-129 (306)
482 3o47_A ADP-ribosylation factor 96.2 0.0045 1.5E-07 62.5 5.7 55 229-285 164-219 (329)
483 3a1s_A Iron(II) transport prot 96.2 0.0033 1.1E-07 61.2 4.5 66 80-150 82-149 (258)
484 3lxw_A GTPase IMAP family memb 96.2 0.0095 3.3E-07 57.4 7.7 76 71-150 95-185 (247)
485 3geh_A MNME, tRNA modification 96.2 0.0021 7E-08 68.2 3.2 70 75-150 297-366 (462)
486 3t61_A Gluconokinase; PSI-biol 96.2 0.0022 7.6E-08 59.4 2.9 25 230-254 18-42 (202)
487 3lvq_E ARF-GAP with SH3 domain 96.2 0.0032 1.1E-07 67.0 4.5 56 229-286 321-377 (497)
488 3sjy_A Translation initiation 96.1 0.0049 1.7E-07 63.9 5.4 26 229-254 7-32 (403)
489 3izy_P Translation initiation 96.1 0.0016 5.4E-08 70.3 1.6 56 230-286 4-63 (537)
490 3iby_A Ferrous iron transport 96.1 0.0019 6.6E-08 62.8 2.0 66 80-150 82-149 (256)
491 3q3j_B RHO-related GTP-binding 96.0 0.004 1.4E-07 58.3 4.1 26 229-254 26-51 (214)
492 1m7g_A Adenylylsulfate kinase; 96.0 0.0031 1.1E-07 59.0 3.3 29 227-255 22-50 (211)
493 3tr5_A RF-3, peptide chain rel 96.0 0.018 6E-07 62.1 9.6 52 73-127 97-149 (528)
494 3kb2_A SPBC2 prophage-derived 96.0 0.0031 1E-07 56.3 3.1 23 232-254 3-25 (173)
495 1jwy_B Dynamin A GTPase domain 96.0 0.011 3.9E-07 58.4 7.6 56 71-128 157-214 (315)
496 3th5_A RAS-related C3 botulinu 95.0 0.0011 3.7E-08 61.3 0.0 25 230-254 30-54 (204)
497 1y63_A LMAJ004144AAA protein; 96.0 0.004 1.4E-07 57.0 3.8 26 228-253 8-33 (184)
498 2wji_A Ferrous iron transport 96.0 0.012 4.1E-07 52.2 6.9 63 80-150 80-147 (165)
499 2ged_A SR-beta, signal recogni 96.0 0.0045 1.6E-07 56.2 4.1 62 75-138 112-182 (193)
500 3dpu_A RAB family protein; roc 96.0 0.0048 1.6E-07 66.4 4.9 26 229-254 40-65 (535)
No 1
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=100.00 E-value=2.3e-31 Score=267.01 Aligned_cols=264 Identities=23% Similarity=0.355 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCeEEEee
Q 010472 69 LDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWS 148 (509)
Q Consensus 69 le~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~gi~~if~S 148 (509)
...|||++++++++|+|++|+|||+|++++++.+++|+ .+||.++|+||+||++.+..++|.+||++.|+.++++|
T Consensus 11 ~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l----~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iS 86 (282)
T 1puj_A 11 AKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL----KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSIN 86 (282)
T ss_dssp THHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC----SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECC
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH----CCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 37999999999999999999999999999999998876 48999999999999999888999999988888888899
Q ss_pred hhhhHHhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccccccCccCC
Q 010472 149 AKAASAALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVDESFAGNVAP 228 (509)
Q Consensus 149 a~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~ 228 (509)
|. +|.++ ++|++.+.+............+ ...
T Consensus 87 A~------~~~gi-----------------------~~L~~~i~~~l~~~~~~~~~~~-------------------~~~ 118 (282)
T 1puj_A 87 SV------NGQGL-----------------------NQIVPASKEILQEKFDRMRAKG-------------------VKP 118 (282)
T ss_dssp TT------TCTTG-----------------------GGHHHHHHHHHHHHHHHHHHTT-------------------CCC
T ss_pred CC------CcccH-----------------------HHHHHHHHHHHHHHHHHHHhcC-------------------CCC
Confidence 85 33332 3455555443332211111110 013
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccH--HHHHHhccCCcc
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISR--YDMVASGVLPID 306 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~--~e~v~~g~~~~~ 306 (509)
.+..++|+|.||||||||+|.|.|.....++..+|+|++.+...+...+.++||||+.+|.+.... ....+.|.....
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~i~~~ 198 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDS 198 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETTTEEEEECCCCCCSCCCCHHHHHHHHHHTSSCTT
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeCCCEEEEECcCcCCCCCCCHHHHHHHHHhCCcchh
Confidence 456899999999999999999999877778889999988887777778999999999999875433 234455554322
Q ss_pred hhhhHHHHHHHHHHhCCc---cchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCceeCCCCCHHHHHHHHHHHHh
Q 010472 307 RMTEHRQAVQVVANRVPR---HVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYVASSGLPDETRAARIILKDF 383 (509)
Q Consensus 307 ~~~~~~~~~~~i~~~l~~---~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lLPtsGLD~~~r~~~~lLkd~ 383 (509)
.+ +.......+.+.+.. ..|...|....+. .++.+++.++|.++|++-++|.+|..+++..+|++|
T Consensus 199 ~~-~~~~~~~~~~~~l~~~~~~~l~~~y~~~~~~----------~~~~~~l~~~a~~~g~~~kgg~~d~~~aa~~~l~d~ 267 (282)
T 1puj_A 199 II-NLQDVAVFGLRFLEEHYPERLKERYGLDEIP----------EDIAELFDAIGEKRGCLMSGGLINYDKTTEVIIRDI 267 (282)
T ss_dssp SS-CHHHHHHHHHHHHHHHCHHHHHHHTTCSSCC----------SSHHHHHHHHHHHHTCBCSTTCBCHHHHHHHHHHHH
T ss_pred hC-CHHHHHHHHHHHHHHhChHHHHHHcCCCCCC----------CCHHHHHHHHHHHhCCcccCCcccHHHHHHHHHHHH
Confidence 11 222323333333222 1233335432110 134899999999999998899999999999999999
Q ss_pred hcCCccEEEcCC
Q 010472 384 IDGKLPHFEMPP 395 (509)
Q Consensus 384 ~~gkl~~~~~pp 395 (509)
++|++++|++++
T Consensus 268 ~~Gklg~~~l~~ 279 (282)
T 1puj_A 268 RTEKFGRLSFEQ 279 (282)
T ss_dssp HTTTTCSCCSCC
T ss_pred HcCCCCceECCC
Confidence 999999998763
No 2
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.96 E-value=1.7e-29 Score=250.81 Aligned_cols=236 Identities=24% Similarity=0.353 Sum_probs=166.2
Q ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCeEEEeeh
Q 010472 70 DMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWSA 149 (509)
Q Consensus 70 e~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~gi~~if~Sa 149 (509)
..|||++++++++|+||+|+|||+|++++++.++ ++ +|+.|+|+||+||++++..+.|.+||++.|+.+ ++||
T Consensus 10 ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-----~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-~iSa 82 (262)
T 3cnl_A 10 KAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-----RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-ITTH 82 (262)
T ss_dssp CTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-----TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-EECC
T ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-----CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-EEEC
Confidence 4789999999999999999999999999998887 64 799999999999999988899999999888887 8887
Q ss_pred hhhHHhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccccccCccCCC
Q 010472 150 KAASAALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVDESFAGNVAPK 229 (509)
Q Consensus 150 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~ 229 (509)
. +|. |.++|++.+. .
T Consensus 83 ~------~~~-----------------------gi~~L~~~l~------------------------------------~ 97 (262)
T 3cnl_A 83 K------GEP-----------------------RKVLLKKLSF------------------------------------D 97 (262)
T ss_dssp T------TSC-----------------------HHHHHHHHCC------------------------------------C
T ss_pred C------CCc-----------------------CHHHHHHHHH------------------------------------H
Confidence 4 222 2234443321 1
Q ss_pred C-cEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeecCeEEEEeCCCccCCCC-cccHHHHHHhccCCcch
Q 010472 230 N-VIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSF-SISRYDMVASGVLPIDR 307 (509)
Q Consensus 230 g-~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~-~~~~~e~v~~g~~~~~~ 307 (509)
. ..++|+|.||+|||||+|.|+|.....++.++|+|+..+...+...+.++||||+..|.+ ...... ...+.....
T Consensus 98 ~~~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~--~~~~~d~~~ 175 (262)
T 3cnl_A 98 RLARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVKILDTPGILYKNIFSEDLAA--KLLLVGSLP 175 (262)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECTTSCEEESSCEECCCCCCSHHHHH--HHHHTTSSC
T ss_pred hhhheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeCCCEEEEECCCcccCcCCCChhhc--ccccCCHHH
Confidence 1 579999999999999999999987766778899998887766677899999999999886 322111 001111000
Q ss_pred hhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCceeCCCCCHHHHHHHHHHHHhhcCC
Q 010472 308 MTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYVASSGLPDETRAARIILKDFIDGK 387 (509)
Q Consensus 308 ~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lLPtsGLD~~~r~~~~lLkd~~~gk 387 (509)
... .....+....+ ..|...|.... .+ .+++.+++.+.+++.++|.++..+++..+|++|+.|+
T Consensus 176 ~~~--~~~~~l~~~~~-~~l~~~y~i~~------------~d-~~~l~~ia~~~g~~~kgg~~d~~~aa~~~l~d~~~g~ 239 (262)
T 3cnl_A 176 VER--IEDQRIFERAF-EIFARSIGIES------------SF-SEFFEDFARKRGLLKKGGVPDIERALMLFFTEVAQGK 239 (262)
T ss_dssp GGG--CCCHHHHHHHH-HHHHHHHTCCC------------CH-HHHHHHHHHHTTCBCGGGCBCHHHHHHHHHHHHHTTT
T ss_pred HHH--HHHHHHHHhCH-HHHHHHcCcCC------------Cc-HHHHHHHHHHhCCccCCCcccHHHHHHHHHHHHHcCC
Confidence 000 00011111100 11223343321 02 6899999999999998999999999999999999999
Q ss_pred ccEEEcCC
Q 010472 388 LPHFEMPP 395 (509)
Q Consensus 388 l~~~~~pp 395 (509)
+++|++|+
T Consensus 240 l~~~~l~~ 247 (262)
T 3cnl_A 240 AGRVSFER 247 (262)
T ss_dssp TCSCCSCC
T ss_pred CCceECCC
Confidence 99998885
No 3
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.92 E-value=2.9e-26 Score=236.68 Aligned_cols=206 Identities=17% Similarity=0.115 Sum_probs=161.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce----eeecCeEEEEeCCCccCCCCcccHHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT----LIISEKLVLCDCPGLVFPSFSISRYDMVA 299 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~----~~~~~~i~l~d~pg~~~p~~~~~~~e~v~ 299 (509)
++++|+++||+|+||||||||+++|+|+.+ .|.+.+.|....... ...+..+++++|...+||.+ ++.+++.
T Consensus 50 ~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~--TV~env~ 127 (366)
T 3tui_C 50 HVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR--TVFGNVA 127 (366)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTS--CHHHHHH
T ss_pred EEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCC--CHHHHHH
Confidence 578999999999999999999999999987 799999997653211 12346799999988888887 6777776
Q ss_pred hccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-
Q 010472 300 SGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR- 374 (509)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r- 374 (509)
.+..... . ...+..+.+.+.+..++|.+ +..+++..|||||+|| ++|||||+.+|++| ||+|||+.++
T Consensus 128 ~~~~~~~-~-~~~~~~~~v~~lL~~vgL~~-~~~~~~~~LSGGqkQR----VaIArAL~~~P~lLLlDEPTs~LD~~~~~ 200 (366)
T 3tui_C 128 LPLELDN-T-PKDEVKRRVTELLSLVGLGD-KHDSYPSNLSGGQKQR----VAIARALASNPKVLLCDQATSALDPATTR 200 (366)
T ss_dssp HHHHHSC-C-CHHHHHHHHHHHHHHHTCGG-GTTCCTTTSCHHHHHH----HHHHHHTTTCCSEEEEESTTTTSCHHHHH
T ss_pred HHHHhcC-C-CHHHHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHH----HHHHHHHhcCCCEEEEECCCccCCHHHHH
Confidence 6532111 1 11223344555555666776 6778899999999999 99999999999998 9999999999
Q ss_pred HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhccC
Q 010472 375 AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDDL 444 (509)
Q Consensus 375 ~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (509)
.+..+|+++++ .+++++..+|++..+...|+.+++++.|++++.++.+....... .+..+.++...
T Consensus 201 ~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p~----~~~~~~~~~~~ 267 (366)
T 3tui_C 201 SILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPK----TPLAQKFIQST 267 (366)
T ss_dssp HHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSCC----SHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC----cHHHHHHHhhc
Confidence 99999999965 47788889999999998888899999999999888766654322 24556666543
No 4
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.91 E-value=2e-25 Score=230.14 Aligned_cols=190 Identities=16% Similarity=0.134 Sum_probs=150.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc---ceeeecCeEEEEeCCCccCCCCcccHHHHHHh
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF---QTLIISEKLVLCDCPGLVFPSFSISRYDMVAS 300 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~---~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~ 300 (509)
++.+|++++|+|||||||||||++|+|+.. .|.+.+.|..... ......+.+++++|...+||.+ ++.+++.+
T Consensus 26 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~l--tV~eni~~ 103 (359)
T 3fvq_A 26 SLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHL--TVYRNIAY 103 (359)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTS--CHHHHHHT
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCC--CHHHHHHH
Confidence 578999999999999999999999999987 7999999976421 1112345799999988899988 77888888
Q ss_pred ccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-H
Q 010472 301 GVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-A 375 (509)
Q Consensus 301 g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~ 375 (509)
++..... ...+..+.+.+.+..++|.+ +..+.+..|||||+|| ++|||||+.+|++| |++|||+..+ .
T Consensus 104 ~l~~~~~--~~~~~~~~v~~~l~~~gL~~-~~~r~~~~LSGGq~QR----ValArAL~~~P~lLLLDEPts~LD~~~r~~ 176 (359)
T 3fvq_A 104 GLGNGKG--RTAQERQRIEAMLELTGISE-LAGRYPHELSGGQQQR----AALARALAPDPELILLDEPFSALDEQLRRQ 176 (359)
T ss_dssp TSTTSSC--CSHHHHHHHHHHHHHHTCGG-GTTSCGGGSCHHHHHH----HHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred HHHHcCC--ChHHHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHH----HHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 7543211 11122334445555556776 7788899999999999 99999999999998 9999999999 8
Q ss_pred HHHHHHHh-hcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 376 ARIILKDF-IDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 376 ~~~lLkd~-~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
++..|.++ ++.+++++..+|++.++...++.++++..|+++..++.+..
T Consensus 177 l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el 226 (359)
T 3fvq_A 177 IREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226 (359)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHH
Confidence 88777766 45577889999999999888888999999999886665443
No 5
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.91 E-value=2.1e-25 Score=231.62 Aligned_cols=204 Identities=12% Similarity=0.038 Sum_probs=157.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++++|++++|+||||||||||+++|+|+.. .|.+.+.|....... .....+++++|...+||.+ ++.+++.++..
T Consensus 25 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~-~~~r~ig~VfQ~~~l~p~l--tV~eni~~~~~ 101 (381)
T 3rlf_A 25 DIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP-PAERGVGMVFQSYALYPHL--SVAENMSFGLK 101 (381)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC-GGGSCEEEECTTCCCCTTS--CHHHHHTHHHH
T ss_pred EECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCC-HHHCCEEEEecCCcCCCCC--CHHHHHHHHHH
Confidence 478999999999999999999999999987 799999997654322 1235799999988899988 67788877643
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
... . ...+..+.+.+.+..++|.. +..+.|..|||||+|| ++|||||+.+|++| |++|||+..+ .++.
T Consensus 102 ~~~-~-~~~~~~~~v~~~l~~~~L~~-~~~r~p~~LSGGqrQR----VaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~ 174 (381)
T 3rlf_A 102 LAG-A-KKEVINQRVNQVAEVLQLAH-LLDRKPKALSGGQRQR----VAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRI 174 (381)
T ss_dssp HTT-C-CHHHHHHHHHHHHHHTTCGG-GTTCCGGGSCHHHHHH----HHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHH
T ss_pred HcC-C-CHHHHHHHHHHHHHHcCCch-hhcCChhHCCHHHHHH----HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHH
Confidence 211 1 11222334444455556766 6778899999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhcc
Q 010472 379 ILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDD 443 (509)
Q Consensus 379 lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (509)
+|+++.+ .+++++..+|++.++...++.+++++.|+++..++.+....... .+....+++.
T Consensus 175 ~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~----~~~v~~~~g~ 236 (381)
T 3rlf_A 175 EISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA----DRFVAGFIGS 236 (381)
T ss_dssp HHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS----BHHHHHHSSS
T ss_pred HHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCc----cHHHHHhcCC
Confidence 9999965 36778888999999998889999999999988766654433211 2445555554
No 6
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.91 E-value=4e-25 Score=218.70 Aligned_cols=189 Identities=9% Similarity=-0.007 Sum_probs=142.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce--eeecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT--LIISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~--~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
++++|++++|+|+||||||||+++|+|+.+ .|.+.+.|....... ...+..++|++|...+|+.+ ++.+++..+
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~--tv~enl~~~ 106 (257)
T 1g6h_A 29 SVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM--TVLENLLIG 106 (257)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGS--BHHHHHHGG
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCC--cHHHHHHHH
Confidence 477999999999999999999999999987 799999997643211 11234689999877777766 677777765
Q ss_pred cCC-cchh----------hhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eC
Q 010472 302 VLP-IDRM----------TEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----AS 366 (509)
Q Consensus 302 ~~~-~~~~----------~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----Pt 366 (509)
... .... .........+.+.+..++|.. +..+.+..|||||+|| ++||+||+.+|++| ||
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkQr----v~iAraL~~~p~lllLDEPt 181 (257)
T 1g6h_A 107 EICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH-LYDRKAGELSGGQMKL----VEIGRALMTNPKMIVMDEPI 181 (257)
T ss_dssp GTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGG-GTTSBGGGSCHHHHHH----HHHHHHHHTCCSEEEEESTT
T ss_pred HhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCch-hhCCCchhCCHHHHHH----HHHHHHHHcCCCEEEEeCCc
Confidence 432 1010 011112233444444556765 6677788999999999 99999999999998 99
Q ss_pred CCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 367 SGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 367 sGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
+|||+.++ .+..+|+++.+.+.+++..+|++...+.+++.+.+++.|++++.++.
T Consensus 182 s~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 237 (257)
T 1g6h_A 182 AGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 237 (257)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEES
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCH
Confidence 99999999 99999999976556777788999998877777888888888765443
No 7
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.91 E-value=2.2e-25 Score=222.72 Aligned_cols=190 Identities=13% Similarity=0.098 Sum_probs=144.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc---ceeeecCeEEEEeCCC-ccCCCCcccHHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF---QTLIISEKLVLCDCPG-LVFPSFSISRYDMVA 299 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~---~~~~~~~~i~l~d~pg-~~~p~~~~~~~e~v~ 299 (509)
++++|+++||+||||||||||+++|+|+.+ .|.+.+.|..... ....++..++|++|.. ..+.. .++.+++.
T Consensus 30 ~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~--~tv~e~l~ 107 (275)
T 3gfo_A 30 NIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFS--ASVYQDVS 107 (275)
T ss_dssp EEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCS--SBHHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCccccccc--CcHHHHHH
Confidence 477899999999999999999999999987 7999999976521 1112345789998854 22223 37777776
Q ss_pred hccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-
Q 010472 300 SGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR- 374 (509)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r- 374 (509)
.+...... ...+..+.+.+.+..++|.. +..+.+..|||||+|| ++||+||+.+|++| ||+|||+.++
T Consensus 108 ~~~~~~~~--~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQR----v~iAraL~~~P~lLlLDEPts~LD~~~~~ 180 (275)
T 3gfo_A 108 FGAVNMKL--PEDEIRKRVDNALKRTGIEH-LKDKPTHCLSFGQKKR----VAIAGVLVMEPKVLILDEPTAGLDPMGVS 180 (275)
T ss_dssp HHHHTSCC--CHHHHHHHHHHHHHHTTCGG-GTTSBGGGSCHHHHHH----HHHHHHHTTCCSEEEEECTTTTCCHHHHH
T ss_pred HHHHHcCC--CHHHHHHHHHHHHHHcCCch-hhcCCcccCCHHHHHH----HHHHHHHHcCCCEEEEECccccCCHHHHH
Confidence 65432111 11222334444555556766 6677889999999999 99999999999998 9999999999
Q ss_pred HHHHHHHHhh-cCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 375 AARIILKDFI-DGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 375 ~~~~lLkd~~-~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
.+..+|++++ +.+.+++..+|++......++.+.+++.|++++.++.+..
T Consensus 181 ~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~ 231 (275)
T 3gfo_A 181 EIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231 (275)
T ss_dssp HHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999997 4356677788999999887778888888999877666544
No 8
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.91 E-value=1.8e-25 Score=221.11 Aligned_cols=188 Identities=13% Similarity=0.073 Sum_probs=141.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|..........+..++|++|...+++.+ ++.+++..+..
T Consensus 37 ~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~l--tv~enl~~~~~ 114 (256)
T 1vpl_A 37 EIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNM--QGIEYLRFVAG 114 (256)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTS--BHHHHHHHHHH
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCC--cHHHHHHHHHH
Confidence 578999999999999999999999999986 79999999764322122345789999977777776 56666654321
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
.. .. ........+.+.+..++|.+ +..+.+..|||||+|| ++||+||+.+|+++ ||+|||+..+ .++.
T Consensus 115 ~~-~~-~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~qR----v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~ 187 (256)
T 1vpl_A 115 FY-AS-SSSEIEEMVERATEIAGLGE-KIKDRVSTYSKGMVRK----LLIARALMVNPRLAILDEPTSGLDVLNAREVRK 187 (256)
T ss_dssp HH-CC-CHHHHHHHHHHHHHHHCCGG-GGGSBGGGCCHHHHHH----HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred Hc-CC-ChHHHHHHHHHHHHHCCCch-HhcCChhhCCHHHHHH----HHHHHHHHcCCCEEEEeCCccccCHHHHHHHHH
Confidence 00 00 11111223344444455665 5667788999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 379 ILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 379 lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
+|+++.+.+.+++..+|++...+..++.+.+++.|+++..++.+
T Consensus 188 ~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 231 (256)
T 1vpl_A 188 ILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVE 231 (256)
T ss_dssp HHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHH
T ss_pred HHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHH
Confidence 99999765566777789998888877788888889888755443
No 9
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.91 E-value=1.8e-25 Score=222.26 Aligned_cols=199 Identities=14% Similarity=0.107 Sum_probs=151.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce-eeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT-LIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~-~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++.+|+++||+|+||||||||+++|+|+.+ .|.+.+.|....... ......++++.|...+++.+ ++.+++..+.
T Consensus 33 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~--tv~e~l~~~~ 110 (266)
T 4g1u_C 33 HIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPF--SVSEVIQMGR 110 (266)
T ss_dssp EEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCC--BHHHHHHGGG
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCC--CHHHHHHhhh
Confidence 477899999999999999999999999987 799999997653221 12334588888876665555 6778887765
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHH------cCCce----eCCCCCHH
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCA------SRGYV----ASSGLPDE 372 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~------~p~lL----PtsGLD~~ 372 (509)
..... ......+..+.+.+ ++.. +..+.+..|||||+|| ++||+||+. +|++| ||+|||+.
T Consensus 111 ~~~~~-~~~~~~~~~~l~~~---~l~~-~~~~~~~~LSgGq~QR----v~iAraL~~~~~~~~~p~lLllDEPts~LD~~ 181 (266)
T 4g1u_C 111 APYGG-SQDRQALQQVMAQT---DCLA-LAQRDYRVLSGGEQQR----VQLARVLAQLWQPQPTPRWLFLDEPTSALDLY 181 (266)
T ss_dssp TTSCS-TTHHHHHHHHHHHT---TCST-TTTSBGGGCCHHHHHH----HHHHHHHHHTCCSSCCCEEEEECCCCSSCCHH
T ss_pred hhcCc-HHHHHHHHHHHHHc---CChh-HhcCCcccCCHHHHHH----HHHHHHHhcccccCCCCCEEEEeCccccCCHH
Confidence 43211 12223334444444 4555 5567788999999999 999999999 99998 99999999
Q ss_pred HH-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhc
Q 010472 373 TR-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLD 442 (509)
Q Consensus 373 ~r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (509)
.+ .+..+|+++.+ ++.+++..+|++......++.+.+++.|++++.++.+..... +.++++++
T Consensus 182 ~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-------~~l~~~~~ 246 (266)
T 4g1u_C 182 HQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNA-------ETLTQWYQ 246 (266)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCCH-------HHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhCc-------HHHHHHhC
Confidence 99 99999999964 678899999999998877888888899999887766544332 45666665
No 10
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.91 E-value=2.5e-25 Score=220.85 Aligned_cols=189 Identities=12% Similarity=0.132 Sum_probs=143.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-----------ce---eeecCeEEEEeCCCccCCC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-----------QT---LIISEKLVLCDCPGLVFPS 289 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-----------~~---~~~~~~i~l~d~pg~~~p~ 289 (509)
++.+|+++||+|+||||||||+++|+|+.+ .|.+.+.|..... .. ...+..++|++|...+|+.
T Consensus 28 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ 107 (262)
T 1b0u_A 28 QARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSH 107 (262)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCC
Confidence 478999999999999999999999999987 7999999976431 00 1124568999998777787
Q ss_pred CcccHHHHHHhccCCcchhhhHHHHHHHHHHhCCccchhhHh-hccCCCCCCccccCCCchHHHHHHHHHHcCCce----
Q 010472 290 FSISRYDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVC-KINLPKPKPYESQSRPPLALELLRAYCASRGYV---- 364 (509)
Q Consensus 290 ~~~~~~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~-~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL---- 364 (509)
+ ++.+++..+....... ........+.+.+..++|.+ + ..+.+..|||||+|| ++||+||+.+|.+|
T Consensus 108 l--tv~e~l~~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~-~~~~~~~~~LSgGq~qR----v~lAraL~~~p~lllLDE 179 (262)
T 1b0u_A 108 M--TVLENVMEAPIQVLGL-SKHDARERALKYLAKVGIDE-RAQGKYPVHLSGGQQQR----VSIARALAMEPDVLLFDE 179 (262)
T ss_dssp S--CHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTCCH-HHHTSCGGGSCHHHHHH----HHHHHHHHTCCSEEEEES
T ss_pred C--cHHHHHHhhHHHhcCC-CHHHHHHHHHHHHHHcCCCc-hhhcCCcccCCHHHHHH----HHHHHHHhcCCCEEEEeC
Confidence 7 5666665532110011 11112233444455556766 5 677889999999999 99999999999998
Q ss_pred eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 365 ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 365 PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
||+|||+.++ .+..+|+++.+.+.+++..+|++.....+++.+.+++.|++++.++.+
T Consensus 180 Pts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 238 (262)
T 1b0u_A 180 PTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPE 238 (262)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred CCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999 999999999765667788889999988777778888889888765544
No 11
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.91 E-value=2.8e-25 Score=220.57 Aligned_cols=189 Identities=12% Similarity=0.090 Sum_probs=143.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc---ceeeecCeEEEEeCCCccCCCCcccHHHHHHh
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF---QTLIISEKLVLCDCPGLVFPSFSISRYDMVAS 300 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~---~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~ 300 (509)
++++|++++|+|+||||||||+++|+|+.+ .|.+.+.|..... .....+..++|++|...+|+.+ ++.+++..
T Consensus 46 ~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~--tv~e~l~~ 123 (263)
T 2olj_A 46 HIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHM--TVLNNITL 123 (263)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTS--CHHHHHHH
T ss_pred EEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCC--CHHHHHHH
Confidence 578999999999999999999999999987 7999999976431 1112244689999987777777 56666655
Q ss_pred ccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-H
Q 010472 301 GVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-A 375 (509)
Q Consensus 301 g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~ 375 (509)
+....... ......+.+.+.+..++|.+ +..+.+..|||||+|| ++||+||+.+|++| ||+|||+..+ .
T Consensus 124 ~~~~~~~~-~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQR----v~lAraL~~~p~lllLDEPts~LD~~~~~~ 197 (263)
T 2olj_A 124 APMKVRKW-PREKAEAKAMELLDKVGLKD-KAHAYPDSLSGGQAQR----VAIARALAMEPKIMLFDEPTSALDPEMVGE 197 (263)
T ss_dssp HHHHTSCC-CHHHHHHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHH----HHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred HHHHHcCC-CHHHHHHHHHHHHHHCCCch-HhcCChhhCCHHHHHH----HHHHHHHHCCCCEEEEeCCcccCCHHHHHH
Confidence 42100011 11112233444444556666 6677888999999999 99999999999998 9999999999 9
Q ss_pred HHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 376 ARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 376 ~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
+..+|+++.+.+.+++..+|++...+.+++.+.+++.|++++.++.+
T Consensus 198 ~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 244 (263)
T 2olj_A 198 VLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPE 244 (263)
T ss_dssp HHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999765667788889999988777788888889888755443
No 12
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.91 E-value=4e-25 Score=215.93 Aligned_cols=189 Identities=12% Similarity=0.039 Sum_probs=140.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccccee----e-ecCeEEEEeCCCccCCCCcccHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTL----I-ISEKLVLCDCPGLVFPSFSISRYDMV 298 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~----~-~~~~i~l~d~pg~~~p~~~~~~~e~v 298 (509)
++.+|+++||+||||||||||+++|+|+.+ .|.+.+.|........ . .+..++|++|...+||.+ ++.+++
T Consensus 27 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~--tv~enl 104 (235)
T 3tif_A 27 NIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL--TALENV 104 (235)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTS--CHHHHH
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCC--cHHHHH
Confidence 578999999999999999999999999987 7999999976432111 1 123599999988888877 667777
Q ss_pred HhccCCcc-hhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHH
Q 010472 299 ASGVLPID-RMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDET 373 (509)
Q Consensus 299 ~~g~~~~~-~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~ 373 (509)
..+..... ...........+.+.+..+++.+.+..+.+..|||||+|| ++||+||+.+|++| ||+|||+.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QR----v~iAral~~~p~llllDEPts~LD~~~ 180 (235)
T 3tif_A 105 ELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQR----VAIARALANNPPIILADQPTWALDSKT 180 (235)
T ss_dssp HHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHH----HHHHHHHTTCCSEEEEESTTTTSCHHH
T ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHH----HHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 65432110 0011122333444555555565533467788999999999 99999999999998 999999999
Q ss_pred H-HHHHHHHHhhcC-CccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 374 R-AARIILKDFIDG-KLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 374 r-~~~~lLkd~~~g-kl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
+ .+..+|+++.+. +.+++..+|++..+++ ++.+.+++.|++++.++.
T Consensus 181 ~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~-~d~i~~l~~G~i~~~~~~ 229 (235)
T 3tif_A 181 GEKIMQLLKKLNEEDGKTVVVVTHDINVARF-GERIIYLKDGEVEREEKL 229 (235)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEECSCHHHHTT-SSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCHHHHHh-CCEEEEEECCEEEEEcCh
Confidence 9 999999999653 5677788888887665 566777788888765443
No 13
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.90 E-value=1.3e-24 Score=225.49 Aligned_cols=189 Identities=13% Similarity=0.110 Sum_probs=142.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++++|++++|+|||||||||||++|+|+.. .|.+.+.|....... ...+.++|++|...+||.+ ++.+++.++..
T Consensus 33 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~~r~ig~v~Q~~~l~~~l--tv~eni~~~~~ 109 (372)
T 1v43_A 33 TIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP-PKDRNISMVFQSYAVWPHM--TVYENIAFPLK 109 (372)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GGGGTEEEEEC------CC--CHHHHHHTTCC
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCC-hhhCcEEEEecCcccCCCC--CHHHHHHHHHH
Confidence 478999999999999999999999999987 799999997653211 1235699999988888888 67888887753
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
... . ...+..+.+.+.+..++|.+ +..+.+..|||||+|| ++|||||+.+|++| |++|||+..+ .++.
T Consensus 110 ~~~-~-~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSGGq~QR----valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~ 182 (372)
T 1v43_A 110 IKK-F-PKDEIDKRVRWAAELLQIEE-LLNRYPAQLSGGQRQR----VAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRA 182 (372)
T ss_dssp --C-C-CHHHHHHHHHHHHHHTTCGG-GTTSCTTTCCSSCHHH----HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHH
T ss_pred hcC-C-CHHHHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHH----HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH
Confidence 211 1 11122233444555556766 6778899999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 379 ILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 379 lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
+|+++.+ .+++++..+|++.++...++.++++..|+++..++.+..
T Consensus 183 ~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 229 (372)
T 1v43_A 183 EIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 229 (372)
T ss_dssp HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999865 356777788999998877888888999999876554433
No 14
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.90 E-value=1.2e-24 Score=213.10 Aligned_cols=186 Identities=15% Similarity=0.102 Sum_probs=140.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccccee--eecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTL--IISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~--~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
++++|++++|+|+||||||||+++|+|+.+ .|.+.+.|........ ..+..++|++|...+|+.+ ++.+++..+
T Consensus 28 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~l--tv~enl~~~ 105 (240)
T 1ji0_A 28 KVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPEL--TVYENLMMG 105 (240)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTS--BHHHHHHGG
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCC--cHHHHHHHh
Confidence 467899999999999999999999999986 7999999976432111 1234589999987777776 677777765
Q ss_pred cCCcchhhhHHHHHHHHHHhCCcc-chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-H
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRH-VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-A 375 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~-~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~ 375 (509)
..+.... . .....+.+.+..+ ++.. +..+.+..|||||+|| ++||+||+.+|+++ ||+|||+..+ .
T Consensus 106 ~~~~~~~-~--~~~~~~~~~l~~~~~l~~-~~~~~~~~LSgGq~qr----v~lAraL~~~p~lllLDEPts~LD~~~~~~ 177 (240)
T 1ji0_A 106 AYNRKDK-E--GIKRDLEWIFSLFPRLKE-RLKQLGGTLSGGEQQM----LAIGRALMSRPKLLMMDEPSLGLAPILVSE 177 (240)
T ss_dssp GTTCCCS-S--HHHHHHHHHHHHCHHHHT-TTTSBSSSSCHHHHHH----HHHHHHHTTCCSEEEEECTTTTCCHHHHHH
T ss_pred hhcCCCH-H--HHHHHHHHHHHHcccHhh-HhcCChhhCCHHHHHH----HHHHHHHHcCCCEEEEcCCcccCCHHHHHH
Confidence 4221111 1 1122233334444 3665 5567788999999999 99999999999998 9999999999 9
Q ss_pred HHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 376 ARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 376 ~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
+..+|+++.+.+.+++..+|++.....+++.+.+++.|+++..++.
T Consensus 178 l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 223 (240)
T 1ji0_A 178 VFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKA 223 (240)
T ss_dssp HHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEH
T ss_pred HHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999975555677778998887777777888888888765443
No 15
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.90 E-value=8.5e-25 Score=225.87 Aligned_cols=189 Identities=14% Similarity=0.102 Sum_probs=147.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++++|++++|+|||||||||||++|+|+.. .|.+.+.|....... ...+.++|++|...+||.+ ++.+++.++..
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~~r~ig~v~Q~~~l~~~l--tv~eni~~~~~ 101 (359)
T 2yyz_A 25 EVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIP-PKYREVGMVFQNYALYPHM--TVFENIAFPLR 101 (359)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GGGTTEEEECSSCCCCTTS--CHHHHHHGGGS
T ss_pred EEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCC-hhhCcEEEEecCcccCCCC--CHHHHHHHHHH
Confidence 478999999999999999999999999987 799999997653211 1245799999988888888 67888887653
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
... . ...+..+.+.+.+..++|.+ +..+.+..|||||+|| ++|||||+.+|++| |++|||+..+ .++.
T Consensus 102 ~~~-~-~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSgGq~QR----valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~ 174 (359)
T 2yyz_A 102 ARR-I-SKDEVEKRVVEIARKLLIDN-LLDRKPTQLSGGQQQR----VALARALVKQPKVLLFDEPLSNLDANLRMIMRA 174 (359)
T ss_dssp SSC-S-HHHHTTHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHH----HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHH
T ss_pred hcC-C-CHHHHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHH----HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence 211 1 11111223444444455766 6778899999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 379 ILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 379 lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
+|+++.+ .+++++..+|++.++..+++.++++..|+++..++.+..
T Consensus 175 ~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 221 (359)
T 2yyz_A 175 EIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221 (359)
T ss_dssp HHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999865 356677778999998888888899999999876555433
No 16
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.90 E-value=7.5e-25 Score=225.85 Aligned_cols=189 Identities=15% Similarity=0.140 Sum_probs=147.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++++|++++|+|||||||||||++|+|+.+ .|.+.+.|....... ...+.++|++|...+||.+ ++.+++.++..
T Consensus 37 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~~r~ig~v~Q~~~l~~~l--tv~eni~~~l~ 113 (355)
T 1z47_A 37 QIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP-PQKRNVGLVFQNYALFQHM--TVYDNVSFGLR 113 (355)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC-GGGSSEEEECGGGCCCTTS--CHHHHHHHHHH
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCC-hhhCcEEEEecCcccCCCC--CHHHHHHHHHH
Confidence 467899999999999999999999999987 799999997653211 2345799999988888888 67777766532
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
.. .. ...+..+.+.+.+..++|.+ +..+.+..|||||+|| ++|||||+.+|++| |++|||+..+ .++.
T Consensus 114 ~~-~~-~~~~~~~~v~~~l~~~gL~~-~~~r~~~~LSGGq~QR----valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~ 186 (355)
T 1z47_A 114 EK-RV-PKDEMDARVRELLRFMRLES-YANRFPHELSGGQQQR----VALARALAPRPQVLLFDEPFAAIDTQIRRELRT 186 (355)
T ss_dssp HT-TC-CHHHHHHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHH----HHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHH
T ss_pred Hc-CC-CHHHHHHHHHHHHHHcCChh-HhcCCcccCCHHHHHH----HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 11 01 11122234444555556766 6778899999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 379 ILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 379 lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
+|+++.+ .+++++..+|++.++...++.++++..|+++..++.+..
T Consensus 187 ~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 233 (355)
T 1z47_A 187 FVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEV 233 (355)
T ss_dssp HHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999865 356778889999998888888889999999876555433
No 17
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.90 E-value=7e-25 Score=226.32 Aligned_cols=207 Identities=13% Similarity=0.116 Sum_probs=155.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc----eeeecCeEEEEeCCCccCCCCcccHHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ----TLIISEKLVLCDCPGLVFPSFSISRYDMVA 299 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~----~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~ 299 (509)
++++|++++|+|||||||||||++|+|+.+ .|.+.+.|...... ....++.++|++|...+||.+ ++.+++.
T Consensus 27 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~l--tv~eni~ 104 (353)
T 1oxx_K 27 NIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNL--TAFENIA 104 (353)
T ss_dssp EECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTS--CHHHHHH
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCC--CHHHHHH
Confidence 478999999999999999999999999987 79999999764220 112346799999988888888 6788887
Q ss_pred hccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-
Q 010472 300 SGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR- 374 (509)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r- 374 (509)
++..... . ......+.+.+.+..++|.+ +..+.+..|||||+|| ++|||||+.+|++| |++|||+..+
T Consensus 105 ~~~~~~~-~-~~~~~~~~v~~~l~~~~L~~-~~~~~~~~LSGGq~QR----valAraL~~~P~lLLLDEP~s~LD~~~r~ 177 (353)
T 1oxx_K 105 FPLTNMK-M-SKEEIRKRVEEVAKILDIHH-VLNHFPRELSGAQQQR----VALARALVKDPSLLLLDEPFSNLDARMRD 177 (353)
T ss_dssp GGGTTSS-C-CHHHHHHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHH----HHHHHHHTTCCSEEEEESTTTTSCGGGHH
T ss_pred HHHHHcC-C-CHHHHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHH----HHHHHHHHhCCCEEEEECCcccCCHHHHH
Confidence 7653211 1 11122233444555556766 6778899999999999 99999999999998 9999999999
Q ss_pred HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhccCC
Q 010472 375 AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDDLS 445 (509)
Q Consensus 375 ~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (509)
.++.+|+.+.+ .+++++..+|++.++...++.+++++.|+++..++.+....... ......+++..+
T Consensus 178 ~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~----~~~~~~~~g~~n 245 (353)
T 1oxx_K 178 SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPV----SIQVASLIGEIN 245 (353)
T ss_dssp HHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS----SHHHHHHHSCCE
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc----cHHHHHhcCCce
Confidence 99999999864 35677778899999888888888999999987655543322111 134455666543
No 18
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.90 E-value=1.1e-24 Score=225.37 Aligned_cols=188 Identities=14% Similarity=0.082 Sum_probs=146.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++++|++++|+|||||||||||++|+|+.. .|.+.+.|....... ...+.++|++|...+||.+ ++.+++.++..
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~~r~ig~v~Q~~~l~~~l--tv~eni~~~~~ 101 (362)
T 2it1_A 25 KIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELP-PKDRNVGLVFQNWALYPHM--TVYKNIAFPLE 101 (362)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GGGTTEEEECTTCCCCTTS--CHHHHHHHHHH
T ss_pred EECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCC-HhHCcEEEEecCcccCCCC--CHHHHHHHHHH
Confidence 478999999999999999999999999987 799999997653211 1235799999988889888 67777776532
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
.. .. ...+..+.+.+.+..++|.+ +..+.+..|||||+|| ++|||||+.+|++| |++|||+..+ .++.
T Consensus 102 ~~-~~-~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSGGq~QR----valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~ 174 (362)
T 2it1_A 102 LR-KA-PREEIDKKVREVAKMLHIDK-LLNRYPWQLSGGQQQR----VAIARALVKEPEVLLLDEPLSNLDALLRLEVRA 174 (362)
T ss_dssp HT-TC-CHHHHHHHHHHHHHHTTCTT-CTTCCGGGSCHHHHHH----HHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHH
T ss_pred hc-CC-CHHHHHHHHHHHHHHcCCch-HhhCChhhCCHHHHHH----HHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence 11 01 11122233444455555666 6678899999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 379 ILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 379 lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
+|+++.+ .+++++..+|++.++...++.++++..|+++..++.+.
T Consensus 175 ~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 220 (362)
T 2it1_A 175 ELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDE 220 (362)
T ss_dssp HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999865 25667777899998888888888999999987655543
No 19
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.90 E-value=1.2e-24 Score=210.94 Aligned_cols=183 Identities=14% Similarity=0.093 Sum_probs=134.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccccee----eec-CeEEEEeCCCccCCCCcccHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTL----IIS-EKLVLCDCPGLVFPSFSISRYDMV 298 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~----~~~-~~i~l~d~pg~~~p~~~~~~~e~v 298 (509)
++++|++++|+|+||||||||+++|+|+.+ .|.+.+.|........ ..+ ..++|++|...+|+.+ ++.+++
T Consensus 26 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~--tv~e~l 103 (224)
T 2pcj_A 26 SVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPEL--TALENV 103 (224)
T ss_dssp EEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTS--CHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCC--CHHHHH
Confidence 467899999999999999999999999987 7999999976432110 112 4689999877777777 566666
Q ss_pred HhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 299 ASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 299 ~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
..+..... . ......+.+.+.+..++|.+ +..+.+..|||||+|| ++||+||+.+|.++ ||+|||+.++
T Consensus 104 ~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qr----v~laral~~~p~lllLDEPt~~LD~~~~ 176 (224)
T 2pcj_A 104 IVPMLKMG-K-PKKEAKERGEYLLSELGLGD-KLSRKPYELSGGEQQR----VAIARALANEPILLFADEPTGNLDSANT 176 (224)
T ss_dssp HHHHHHTT-C-CHHHHHHHHHHHHHHTTCTT-CTTCCGGGSCHHHHHH----HHHHHHTTTCCSEEEEESTTTTCCHHHH
T ss_pred HhHHHHcC-C-CHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHH----HHHHHHHHcCCCEEEEeCCCCCCCHHHH
Confidence 55421110 0 01112223444444455665 5667788999999999 99999999999998 9999999999
Q ss_pred -HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccC
Q 010472 375 -AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHES 418 (509)
Q Consensus 375 -~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~ 418 (509)
.+..+|+++.+.+.+++..+|++...+ .++.+.+++.|++++.
T Consensus 177 ~~~~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~v~~l~~G~i~~~ 220 (224)
T 2pcj_A 177 KRVMDIFLKINEGGTSIVMVTHERELAE-LTHRTLEMKDGKVVGE 220 (224)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSCHHHHT-TSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCHHHHH-hCCEEEEEECCEEEEE
Confidence 999999999654556777788888775 4556677777877653
No 20
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.90 E-value=2.3e-24 Score=214.31 Aligned_cols=184 Identities=13% Similarity=0.022 Sum_probs=139.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCC-ccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPG-LVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg-~~~p~~~~~~~e~v~~g~ 302 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|...... ..+..++|+.|.. ..++.+ ++.+++..+.
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~--~~~~~i~~v~q~~~~~~~~~--tv~enl~~~~ 104 (266)
T 2yz2_A 29 VINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY--EIRRNIGIAFQYPEDQFFAE--RVFDEVAFAV 104 (266)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH--HHGGGEEEECSSGGGGCCCS--SHHHHHHHTT
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH--HhhhhEEEEeccchhhcCCC--cHHHHHHHHH
Confidence 578999999999999999999999999987 79999999764321 3345689998863 344444 6777776654
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchh--hHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-H
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIE--NVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-A 375 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~--~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~ 375 (509)
............+..+.+ .++|. + +..+.+..|||||+|| ++||+||+.+|+++ ||+|||+..+ .
T Consensus 105 ~~~~~~~~~~~~~~~~l~---~~gl~~~~-~~~~~~~~LSgGq~qR----v~lAraL~~~p~lllLDEPts~LD~~~~~~ 176 (266)
T 2yz2_A 105 KNFYPDRDPVPLVKKAME---FVGLDFDS-FKDRVPFFLSGGEKRR----VAIASVIVHEPDILILDEPLVGLDREGKTD 176 (266)
T ss_dssp TTTCTTSCSHHHHHHHHH---HTTCCHHH-HTTCCGGGSCHHHHHH----HHHHHHHTTCCSEEEEESTTTTCCHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHH---HcCcCCcc-cccCChhhCCHHHHHH----HHHHHHHHcCCCEEEEcCccccCCHHHHHH
Confidence 221000111223333444 44565 5 5677888999999999 99999999999998 9999999999 9
Q ss_pred HHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 376 ARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 376 ~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
+..+|+++.+.+.+++..+|++......++.+.+++.|+++..++.
T Consensus 177 l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 222 (266)
T 2yz2_A 177 LLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTR 222 (266)
T ss_dssp HHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEH
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999965466777788999998876777788888888765444
No 21
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.90 E-value=1.5e-24 Score=225.20 Aligned_cols=189 Identities=14% Similarity=0.084 Sum_probs=146.5
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc-----eeeecCeEEEEeCCCccCCCCcccHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ-----TLIISEKLVLCDCPGLVFPSFSISRYDMV 298 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~-----~~~~~~~i~l~d~pg~~~p~~~~~~~e~v 298 (509)
++++|++++|+|||||||||||++|+|+.. .|.+.+.|...... .....+.++|++|...+||.+ ++.+++
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~l--tv~eni 102 (372)
T 1g29_1 25 EVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHM--TVYDNI 102 (372)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTS--CHHHHH
T ss_pred EEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCC--CHHHHH
Confidence 467899999999999999999999999987 79999999764320 111245799999988889988 677777
Q ss_pred HhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 299 ASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 299 ~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
.++..... . ...+..+.+.+.+..++|.+ +..+.+..|||||+|| ++|||||+.+|.+| |++|||+..+
T Consensus 103 ~~~~~~~~-~-~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSGGq~QR----valArAL~~~P~lLLLDEP~s~LD~~~r 175 (372)
T 1g29_1 103 AFPLKLRK-V-PRQEIDQRVREVAELLGLTE-LLNRKPRELSGGQRQR----VALGRAIVRKPQVFLMDEPLSNLDAKLR 175 (372)
T ss_dssp HHHHHHTT-C-CHHHHHHHHHHHHHHHTCGG-GTTCCGGGSCHHHHHH----HHHHHHHHTCCSEEEEECTTTTSCHHHH
T ss_pred HHHHHHcC-C-CHHHHHHHHHHHHHHCCCch-HhcCCcccCCHHHHHH----HHHHHHHhcCCCEEEECCCCccCCHHHH
Confidence 76532110 0 11122233444555556766 6778899999999999 99999999999998 9999999999
Q ss_pred -HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 375 -AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 375 -~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
.++.+|+++.+ .+++++..+|++.++..+++.+++++.|+++..++.+.
T Consensus 176 ~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 176 VRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999865 35667778899999888888888999999987655443
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.89 E-value=1.3e-24 Score=217.60 Aligned_cols=192 Identities=13% Similarity=0.012 Sum_probs=138.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccc--c-ceeeecCeEEEEeCCCccCCCCcccHHHHHHh
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKH--F-QTLIISEKLVLCDCPGLVFPSFSISRYDMVAS 300 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~--~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~ 300 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|.... . .....+..++|++|...++.....++.+++..
T Consensus 43 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~ 122 (279)
T 2ihy_A 43 QIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVIS 122 (279)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHT
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHh
Confidence 467899999999999999999999999987 799999997643 1 11123456889988644322222377888876
Q ss_pred ccCCcchh--hhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 301 GVLPIDRM--TEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 301 g~~~~~~~--~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
+..+.... .........+.+.+..++|.+ +..+.+..|||||+|| ++||+||+.+|.+| ||+|||+.++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqkqR----v~lAraL~~~p~lLlLDEPts~LD~~~~ 197 (279)
T 2ihy_A 123 GAFKSIGVYQDIDDEIRNEAHQLLKLVGMSA-KAQQYIGYLSTGEKQR----VMIARALMGQPQVLILDEPAAGLDFIAR 197 (279)
T ss_dssp TC---------CCHHHHHHHHHHHHHTTCGG-GTTSBGGGSCHHHHHH----HHHHHHHHTCCSEEEEESTTTTCCHHHH
T ss_pred hhhhccccccCCcHHHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHH----HHHHHHHhCCCCEEEEeCCccccCHHHH
Confidence 64321000 000112233444444556665 5667788999999999 99999999999998 9999999999
Q ss_pred -HHHHHHHHhhc-CCccE-EEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 375 -AARIILKDFID-GKLPH-FEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 375 -~~~~lLkd~~~-gkl~~-~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
.+..+|+++.+ |.+++ +..+|++.....+++.+.+++.|++++.++.+
T Consensus 198 ~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 248 (279)
T 2ihy_A 198 ESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVE 248 (279)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999865 54431 77789988887777778888888887655443
No 23
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.89 E-value=2.2e-24 Score=211.43 Aligned_cols=184 Identities=14% Similarity=0.093 Sum_probs=140.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++++ ++++|+|+||||||||+++|+|+.+ .|.+.+.|...... ...+..++|++|...+|+.+ ++.+++..+..
T Consensus 21 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~i~~v~q~~~l~~~l--tv~enl~~~~~ 96 (240)
T 2onk_A 21 EMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL-PPERRGIGFVPQDYALFPHL--SVYRNIAYGLR 96 (240)
T ss_dssp EECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS-CTTTSCCBCCCSSCCCCTTS--CHHHHHHTTCT
T ss_pred EECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC-chhhCcEEEEcCCCccCCCC--cHHHHHHHHHH
Confidence 4678 9999999999999999999999987 79999999764321 12245688888877777776 66777776542
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
... ... ..+.+.+.+..++|.+ +..+.+..|||||+|| ++||+||+.+|+++ ||+|||+.++ .++.
T Consensus 97 ~~~-~~~---~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqR----v~lAral~~~p~lllLDEPts~LD~~~~~~~~~ 167 (240)
T 2onk_A 97 NVE-RVE---RDRRVREMAEKLGIAH-LLDRKPARLSGGERQR----VALARALVIQPRLLLLDEPLSAVDLKTKGVLME 167 (240)
T ss_dssp TSC-HHH---HHHHHHHHHHTTTCTT-TTTCCGGGSCHHHHHH----HHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHH
T ss_pred HcC-Cch---HHHHHHHHHHHcCCHH-HhcCChhhCCHHHHHH----HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 211 111 1233444555556766 6677888999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 379 ILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 379 lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
+|+++.+ .+.+++..+|++.....+++.+.+++.|+++..++.+
T Consensus 168 ~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~ 212 (240)
T 2onk_A 168 ELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLK 212 (240)
T ss_dssp HHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999864 3456666789988877777778888888888755443
No 24
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.89 E-value=8.3e-25 Score=225.16 Aligned_cols=203 Identities=14% Similarity=0.080 Sum_probs=152.5
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++++|++++|+|||||||||||++|+|+.. .|.+.+.|...... ...++.++|++|...+||.+ ++.+++.++..
T Consensus 22 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~-~~~~r~ig~v~Q~~~l~~~l--tv~enl~~~~~ 98 (348)
T 3d31_A 22 KVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDL-SPEKHDIAFVYQNYSLFPHM--NVKKNLEFGMR 98 (348)
T ss_dssp EECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTS-CHHHHTCEEECTTCCCCTTS--CHHHHHHHHHH
T ss_pred EEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCC-chhhCcEEEEecCcccCCCC--CHHHHHHHHHH
Confidence 478999999999999999999999999987 79999999764321 11234689999988889988 67777766532
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
.. ..... +.+.+.+..++|.+ +..+.+..|||||+|| ++|||||+.+|++| |++|||+..+ .++.
T Consensus 99 ~~-~~~~~----~~v~~~l~~~~L~~-~~~~~~~~LSgGq~QR----valAraL~~~P~lLLLDEP~s~LD~~~~~~l~~ 168 (348)
T 3d31_A 99 MK-KIKDP----KRVLDTARDLKIEH-LLDRNPLTLSGGEQQR----VALARALVTNPKILLLDEPLSALDPRTQENARE 168 (348)
T ss_dssp HH-CCCCH----HHHHHHHHHTTCTT-TTTSCGGGSCHHHHHH----HHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHH
T ss_pred Hc-CCCHH----HHHHHHHHHcCCch-HhcCChhhCCHHHHHH----HHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence 10 00111 23334444445666 6678899999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhccCC
Q 010472 379 ILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDDLS 445 (509)
Q Consensus 379 lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (509)
+|+++.+ .+++++..+|++.++..+++.+++++.|+++..++.+....... ......+++.-+
T Consensus 169 ~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~----~~~~a~~~g~~n 232 (348)
T 3d31_A 169 MLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPV----EGRVASFVGFEN 232 (348)
T ss_dssp HHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCC----TTHHHHHHCSCE
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcc----cHHHHHhcCCce
Confidence 9999864 46677778899998888888888999999987655544332211 234556666543
No 25
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.88 E-value=1.1e-23 Score=207.51 Aligned_cols=190 Identities=12% Similarity=0.026 Sum_probs=132.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcC--Cc--ceEEeeCCccccccee--eecCeEEEEeCCCccCCCCcccHHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQ--KR--TGVTSTPGKTKHFQTL--IISEKLVLCDCPGLVFPSFSISRYDMVA 299 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~--~~--~g~~~~~G~t~~~~~~--~~~~~i~l~d~pg~~~p~~~~~~~e~v~ 299 (509)
++.+|++++|+|+||||||||+++|+|+ .. .|.+.+.|........ ..+..+++++|...+|+.+ ++.+++.
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~--tv~e~l~ 102 (250)
T 2d2e_A 25 VVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGV--TIANFLR 102 (250)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSC--BHHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCC--CHHHHHH
Confidence 4678999999999999999999999997 43 7999999976432111 1123467787776677776 5556554
Q ss_pred hccCCcchh-hhHHHHHHHHHHhCCccch-hhHhhccCCCC-CCccccCCCchHHHHHHHHHHcCCce----eCCCCCHH
Q 010472 300 SGVLPIDRM-TEHRQAVQVVANRVPRHVI-ENVCKINLPKP-KPYESQSRPPLALELLRAYCASRGYV----ASSGLPDE 372 (509)
Q Consensus 300 ~g~~~~~~~-~~~~~~~~~i~~~l~~~~L-~~~~~~~~~~~-LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~ 372 (509)
.+....... .........+.+.+..++| .. +..+.+.. |||||+|| ++||+||+.+|.++ ||+|||+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~~~LSgGqkQr----v~iAraL~~~p~lllLDEPts~LD~~ 177 (250)
T 2d2e_A 103 LALQAKLGREVGVAEFWTKVKKALELLDWDES-YLSRYLNEGFSGGEKKR----NEILQLLVLEPTYAVLDETDSGLDID 177 (250)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGG-GGGSBTTCC----HHHH----HHHHHHHHHCCSEEEEECGGGTTCHH
T ss_pred HHHHhhccccCCHHHHHHHHHHHHHHcCCChh-HhcCCcccCCCHHHHHH----HHHHHHHHcCCCEEEEeCCCcCCCHH
Confidence 432110000 0111122334444444556 34 55677888 99999999 99999999999998 99999999
Q ss_pred HH-HHHHHHHHhhcCCccEEEcCCCCChhhcc-chhhHhhcccccccCCCCc
Q 010472 373 TR-AARIILKDFIDGKLPHFEMPPGMSHEEVG-MEDTQASSLLELHESDASD 422 (509)
Q Consensus 373 ~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 422 (509)
++ .+..+|+.+.+.+.+++..+|++...+.+ ++.+.+++.|+++..++.+
T Consensus 178 ~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 178 ALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 99 99999999976556677788999888875 5888888889888655443
No 26
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.88 E-value=1.3e-23 Score=206.85 Aligned_cols=182 Identities=11% Similarity=0.019 Sum_probs=138.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|..... .....+..++|++|...+|+.+ ++.+++..+..
T Consensus 22 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~--tv~e~l~~~~~ 99 (249)
T 2qi9_C 22 EVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFAT--PVWHYLTLHQH 99 (249)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTC--BHHHHHHTTCS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCC--cHHHHHHHhhc
Confidence 467899999999999999999999999976 3888898865421 1112344689998877677666 67777776533
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCC-------ce----eCCCCCHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRG-------YV----ASSGLPDE 372 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~-------lL----PtsGLD~~ 372 (509)
.. . . ...+..+.+. ++|.+ +..+.+..|||||+|| ++||+||+.+|+ +| ||+|||+.
T Consensus 100 ~~--~-~-~~~~~~~l~~---~~l~~-~~~~~~~~LSgGq~qr----v~lAraL~~~p~~~~~~~~lllLDEPts~LD~~ 167 (249)
T 2qi9_C 100 DK--T-R-TELLNDVAGA---LALDD-KLGRSTNQLSGGEWQR----VRLAAVVLQITPQANPAGQLLLLDEPMNSLDVA 167 (249)
T ss_dssp ST--T-C-HHHHHHHHHH---TTCGG-GTTSBGGGCCHHHHHH----HHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHH
T ss_pred cC--C-c-HHHHHHHHHH---cCChh-HhcCChhhCCHHHHHH----HHHHHHHHcCCCcCCCCCeEEEEECCcccCCHH
Confidence 21 1 1 2233334444 45655 5566788999999999 999999999999 87 99999999
Q ss_pred HH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 373 TR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 373 ~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
++ .+..+|+.+.+.+.+++..+|++...+..++.+.+++.|++++.++.
T Consensus 168 ~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 217 (249)
T 2qi9_C 168 QQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRR 217 (249)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEH
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99 99999999965456677788999988766777778888888765443
No 27
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.88 E-value=2.4e-23 Score=205.56 Aligned_cols=175 Identities=13% Similarity=0.058 Sum_probs=129.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++++|++++|+|+||||||||+++|+|+.+ .|.+. ....++|++|...+++.+ ++.+++..+..
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~------------~~~~i~~v~q~~~~~~~~--tv~enl~~~~~ 92 (253)
T 2nq2_C 27 DLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE------------VYQSIGFVPQFFSSPFAY--SVLDIVLMGRS 92 (253)
T ss_dssp EEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE------------ECSCEEEECSCCCCSSCC--BHHHHHHGGGG
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE------------EeccEEEEcCCCccCCCC--CHHHHHHHhhh
Confidence 467899999999999999999999999987 56654 234688999877777666 67777776542
Q ss_pred Ccchh--hhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HH
Q 010472 304 PIDRM--TEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AA 376 (509)
Q Consensus 304 ~~~~~--~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~ 376 (509)
+.... .........+.+.+..++|.+ +..+.+..|||||+|| ++||+||+.+|++| ||+|||+.++ .+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qr----v~lAraL~~~p~lllLDEPts~LD~~~~~~l 167 (253)
T 2nq2_C 93 THINTFAKPKSHDYQVAMQALDYLNLTH-LAKREFTSLSGGQRQL----ILIARAIASECKLILLDEPTSALDLANQDIV 167 (253)
T ss_dssp GGSCTTCCCCHHHHHHHHHHHHHTTCGG-GTTSBGGGSCHHHHHH----HHHHHHHHTTCSEEEESSSSTTSCHHHHHHH
T ss_pred hhcccccCCCHHHHHHHHHHHHHcCChH-HhcCChhhCCHHHHHH----HHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 21000 000111223334444445665 5567788999999999 99999999999998 9999999999 99
Q ss_pred HHHHHHhhcC-CccEEEcCCCCChhhccchhhHhhcccccccCCC
Q 010472 377 RIILKDFIDG-KLPHFEMPPGMSHEEVGMEDTQASSLLELHESDA 420 (509)
Q Consensus 377 ~~lLkd~~~g-kl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (509)
..+|+++.+. +.+++..+|++.....+++.+.+++.|+ ++.++
T Consensus 168 ~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~ 211 (253)
T 2nq2_C 168 LSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGE 211 (253)
T ss_dssp HHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEE
T ss_pred HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCC
Confidence 9999999763 5667778899888866666777777777 55443
No 28
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.87 E-value=6e-23 Score=204.24 Aligned_cols=189 Identities=11% Similarity=0.042 Sum_probs=134.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCC--c--ceEEeeCCccccccee-e-ecCeEEEEeCCCccCCCCcccHHHHHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQK--R--TGVTSTPGKTKHFQTL-I-ISEKLVLCDCPGLVFPSFSISRYDMVA 299 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~--~--~g~~~~~G~t~~~~~~-~-~~~~i~l~d~pg~~~p~~~~~~~e~v~ 299 (509)
++.+|++++|+|+||||||||+++|+|+. . .|.+.+.|........ . ....++|+.|...+|+.++ +.+++.
T Consensus 42 ~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~t--v~e~~~ 119 (267)
T 2zu0_C 42 DVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVS--NQFFLQ 119 (267)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCB--HHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcccccccc--HHHHHH
Confidence 57899999999999999999999999983 2 7999999976432111 1 1234888988777788774 444443
Q ss_pred hcc------CCcchhhhHHHHHHHHHHhCCccchhhHhhccCCC-CCCccccCCCchHHHHHHHHHHcCCce----eCCC
Q 010472 300 SGV------LPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPK-PKPYESQSRPPLALELLRAYCASRGYV----ASSG 368 (509)
Q Consensus 300 ~g~------~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~-~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsG 368 (509)
.+. +..... ........+.+.+..++|...+..+.+. .|||||+|| ++||+||+.+|.+| ||+|
T Consensus 120 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QR----v~iAraL~~~p~lLlLDEPts~ 194 (267)
T 2zu0_C 120 TALNAVRSYRGQETL-DRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKR----NDILQMAVLEPELCILDESDSG 194 (267)
T ss_dssp HHHHHHHHGGGCCCC-CHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHH----HHHHHHHHHCCSEEEEESTTTT
T ss_pred HHHHhhhhhhccccC-CHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHH----HHHHHHHHhCCCEEEEeCCCCC
Confidence 321 000000 1111122344444445564224455665 599999999 99999999999998 9999
Q ss_pred CCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhcc-chhhHhhcccccccCCCC
Q 010472 369 LPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVG-MEDTQASSLLELHESDAS 421 (509)
Q Consensus 369 LD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~-~~~~~~~~~~~~~~~~~~ 421 (509)
||+..+ .+..+|+.+.+.+.+++..+|++...+.+ ++.+.+++.|++++.++.
T Consensus 195 LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 249 (267)
T 2zu0_C 195 LDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 249 (267)
T ss_dssp CCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECT
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCH
Confidence 999999 99999999866556677788999888764 788888888888765443
No 29
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.87 E-value=4.3e-23 Score=205.72 Aligned_cols=187 Identities=13% Similarity=0.062 Sum_probs=135.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++++|++++|+|+||||||||+++|+|+.+ .|.+.+.|..... ....++..++|++|...+|+ . ++.+++..+.
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~--tv~enl~~~~ 117 (271)
T 2ixe_A 41 TLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R--SFRENIAYGL 117 (271)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S--BHHHHHHTTC
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCcccc-c--cHHHHHhhhc
Confidence 578999999999999999999999999987 7999999976432 11123456899999776665 3 7788887764
Q ss_pred CCcchhhhHHHHH--HHHHHhCCcc--chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH
Q 010472 303 LPIDRMTEHRQAV--QVVANRVPRH--VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 303 ~~~~~~~~~~~~~--~~i~~~l~~~--~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r 374 (509)
............. ..+.+.+..+ ++.. +....+..|||||+|| ++||+||+.+|.+| ||+|||+.++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~-~~~~~~~~LSgGq~QR----v~lAraL~~~p~lllLDEPts~LD~~~~ 192 (271)
T 2ixe_A 118 TRTPTMEEITAVAMESGAHDFISGFPQGYDT-EVGETGNQLSGGQRQA----VALARALIRKPRLLILDNATSALDAGNQ 192 (271)
T ss_dssp SSCCCHHHHHHHHHHHTCHHHHHHSTTGGGS-BCCGGGTTSCHHHHHH----HHHHHHHTTCCSEEEEESTTTTCCHHHH
T ss_pred ccCChHHHHHHHHHHHhHHHHHHhhhcchhh-hhcCCcCCCCHHHHHH----HHHHHHHhcCCCEEEEECCccCCCHHHH
Confidence 3211100101111 1112222222 4444 4456678999999999 99999999999998 9999999999
Q ss_pred -HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 375 -AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 375 -~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
.+..+|+.+.. .+.+++..+|++...++ ++.+.++..|++++.++.
T Consensus 193 ~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~~g~~ 240 (271)
T 2ixe_A 193 LRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCEQGTH 240 (271)
T ss_dssp HHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCH
Confidence 99999999864 35567777899888876 667778888888765443
No 30
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.87 E-value=6.2e-23 Score=197.64 Aligned_cols=171 Identities=11% Similarity=0.036 Sum_probs=128.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|++++|+|+||||||||+++|+|+.+ .|.+.+.|.... ..+..++|++|...+|+.+ ++.+++..+..
T Consensus 31 ~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~----~~~~~i~~v~q~~~~~~~~--tv~enl~~~~~ 104 (214)
T 1sgw_A 31 TIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT----KVKGKIFFLPEEIIVPRKI--SVEDYLKAVAS 104 (214)
T ss_dssp EEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG----GGGGGEEEECSSCCCCTTS--BHHHHHHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh----hhcCcEEEEeCCCcCCCCC--CHHHHHHHHHH
Confidence 467899999999999999999999999987 799999997653 1355789999877777776 56666654321
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
....... ...+..+.+.+ +|.. + .+.+..||+||+|| ++||+||+.+|+++ ||+|||+.++ .+..
T Consensus 105 ~~~~~~~-~~~~~~~l~~~---gl~~-~-~~~~~~LSgGqkqr----v~laraL~~~p~lllLDEPts~LD~~~~~~l~~ 174 (214)
T 1sgw_A 105 LYGVKVN-KNEIMDALESV---EVLD-L-KKKLGELSQGTIRR----VQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLK 174 (214)
T ss_dssp HTTCCCC-HHHHHHHHHHT---TCCC-T-TSBGGGSCHHHHHH----HHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHH
T ss_pred hcCCchH-HHHHHHHHHHc---CCCc-C-CCChhhCCHHHHHH----HHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHH
Confidence 0000011 22333444444 4554 4 56678899999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhcCCccEEEcCCCCChhhccchhhHhhcc
Q 010472 379 ILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSL 412 (509)
Q Consensus 379 lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~ 412 (509)
+|+++.+.+.+++..+|++...+.+++.+..+.+
T Consensus 175 ~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~~ 208 (214)
T 1sgw_A 175 SILEILKEKGIVIISSREELSYCDVNENLHKYST 208 (214)
T ss_dssp HHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGBC
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeCC
Confidence 9999875345566677888888877777665443
No 31
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.87 E-value=1.4e-22 Score=199.44 Aligned_cols=182 Identities=13% Similarity=0.077 Sum_probs=132.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++++|++++|+|+||||||||+++|+|+.+ .|.+.+.|..... ....++..++|++|...+|+ . ++.+++..+.
T Consensus 31 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~--tv~enl~~~~ 107 (247)
T 2ff7_A 31 SIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-R--SIIDNISLAN 107 (247)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-S--BHHHHHTTTC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-c--cHHHHHhccC
Confidence 467999999999999999999999999987 7999999976432 11123456899998776664 3 7788887653
Q ss_pred CCcchhhhHHHHHHHHHHhCCcc--------chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRH--------VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~--------~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
... . ...+..+.+.+... ++.. +....+..|||||+|| ++||+||+.+|+++ ||+|||
T Consensus 108 ~~~----~-~~~~~~~l~~~~l~~~~~~~~~gl~~-~~~~~~~~LSgGq~qR----v~iAraL~~~p~lllLDEPts~LD 177 (247)
T 2ff7_A 108 PGM----S-VEKVIYAAKLAGAHDFISELREGYNT-IVGEQGAGLSGGQRQR----IAIARALVNNPKILIFDEATSALD 177 (247)
T ss_dssp TTC----C-HHHHHHHHHHHTCHHHHHTSTTGGGC-BCSTTTTCCCHHHHHH----HHHHHHHTTCCSEEEECCCCSCCC
T ss_pred CCC----C-HHHHHHHHHHhChHHHHHhCcchhhh-hhhCCCCCCCHHHHHH----HHHHHHHhcCCCEEEEeCCcccCC
Confidence 111 1 11222222222211 1211 1223457899999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
+.++ .++.+|+++.+| .+++..+|++...+. ++.+.++..|++++.++.+
T Consensus 178 ~~~~~~i~~~l~~~~~g-~tviivtH~~~~~~~-~d~v~~l~~G~i~~~g~~~ 228 (247)
T 2ff7_A 178 YESEHVIMRNMHKICKG-RTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHK 228 (247)
T ss_dssp HHHHHHHHHHHHHHHTT-SEEEEECSSGGGGTT-SSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHH
Confidence 9999 999999999664 566667888888877 6677778888887655443
No 32
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.86 E-value=6e-23 Score=211.63 Aligned_cols=212 Identities=20% Similarity=0.156 Sum_probs=132.3
Q ss_pred cccCcccccHHH-----HHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH-hcCCcEEEEEeCCCCCCHHH---H
Q 010472 60 LVLTPFEKNLDM-----WRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREI-DKYKRTLLLVNKADLLPFSV---R 130 (509)
Q Consensus 60 ~~lt~fE~nle~-----wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~-~~~K~~iLVlNK~DL~p~~~---~ 130 (509)
++...+++.-.+ +++++.+++++|+|++ |||++|.++.+ .+++|+... ..+++.|||+||+||++++. .
T Consensus 104 ~I~~i~~R~~~l~R~~~~~~~~~i~anvD~v~i-v~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~ 181 (358)
T 2rcn_A 104 IVEAVHERTSVLTRPDFYDGVKPIAANIDQIVI-VSAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFV 181 (358)
T ss_dssp EEEEECCCSCEEEEC-----CEEEEECCCEEEE-EEESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHH
T ss_pred eEeEEeCCcCcccCcchhhHHHHHHhcCCEEEE-EEeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhHHHH
Confidence 344445554333 3477778999999995 58999998776 688887532 35889999999999999865 6
Q ss_pred HHHHHHHHhcCCeEEEeehhhhHHhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 010472 131 KRWAKYFKDHDILFVFWSAKAASAALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSST 210 (509)
Q Consensus 131 ~~W~~yf~~~gi~~if~Sa~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~ 210 (509)
+.|..+|.+.|+.++++|+. +|.+ .+.|...
T Consensus 182 ~~~~~~y~~~G~~v~~~Sa~------~~~g-----------------------l~~L~~~-------------------- 212 (358)
T 2rcn_A 182 NEQMDIYRNIGYRVLMVSSH------TQDG-----------------------LKPLEEA-------------------- 212 (358)
T ss_dssp HHHHHHHHTTTCCEEECBTT------TTBT-----------------------HHHHHHH--------------------
T ss_pred HHHHHHHHhCCCcEEEEecC------CCcC-----------------------HHHHHHh--------------------
Confidence 78999999999999998874 2322 2233221
Q ss_pred CCCCcccccccccCccCCCCcEEEEEecCCCCHhHHHHHHhcCCc---ceEEeeC-CcccccceeeecCeEEEEeCCCcc
Q 010472 211 GKSNVQSVDESFAGNVAPKNVIVGFVGYPNVGKSSTINALVGQKR---TGVTSTP-GKTKHFQTLIISEKLVLCDCPGLV 286 (509)
Q Consensus 211 ~~~~~~~~~~~~~~~~i~~g~~vglvG~nGaGKSTLln~L~G~~~---~g~~~~~-G~t~~~~~~~~~~~i~l~d~pg~~ 286 (509)
..|++++|+|+||||||||||+|+|... .|.+.+. |...+.. ....++++++.+.+
T Consensus 213 -----------------~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt---~~~~i~~v~q~~~l 272 (358)
T 2rcn_A 213 -----------------LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTT---TAARLYHFPHGGDV 272 (358)
T ss_dssp -----------------HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC----------------CCCEEEECTTSCEE
T ss_pred -----------------cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccce---EEEEEEEECCCCEe
Confidence 1478999999999999999999999875 4666554 5433211 12234555554444
Q ss_pred CCCCcccHHHHHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHH
Q 010472 287 FPSFSISRYDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAY 357 (509)
Q Consensus 287 ~p~~~~~~~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~AL 357 (509)
++.+ +..+ .++... ...+....+.+.+..+++.. +....+..+| |++|| ++|++++
T Consensus 273 ~dtp--gv~e---~~l~~l----~~~e~~~~~~e~l~~~gl~~-f~~~~~~~lS-G~~~r----~ala~gl 328 (358)
T 2rcn_A 273 IDSP--GVRE---FGLWHL----EPEQITQGFVEFHDYLGHCK-YRDCKHDADP-GCAIR----EAVENGA 328 (358)
T ss_dssp EECH--HHHT---CCCCCC----CHHHHHHTSGGGGGGTTCSS-STTCCSSSCT-TCHHH----HHHHHTS
T ss_pred cCcc--cHHH---hhhcCC----CHHHHHHHHHHHHHHcCCch-hcCCCcccCC-HHHHH----HHHHhcC
Confidence 4433 1111 122211 11122333445555556655 5667788899 99999 8887654
No 33
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.85 E-value=3e-22 Score=196.47 Aligned_cols=182 Identities=13% Similarity=0.078 Sum_probs=132.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++++|++++|+|+||||||||+++|+|+.+ .|.+.+.|..... ....++..++|++|...+|+ .++.+++..+.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~---~tv~enl~~~~ 100 (243)
T 1mv5_A 24 EAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA---GTIRENLTYGL 100 (243)
T ss_dssp EECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC---EEHHHHTTSCT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc---ccHHHHHhhhc
Confidence 478999999999999999999999999986 7999999976432 12234556889988776654 27788887653
Q ss_pred CCcchhhhHHHHHHHHHHhCCcc--------chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRH--------VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~--------~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
.+. . . ...+..+.+.+... ++.. .....+..|||||+|| ++||+||+.+|+++ ||+|||
T Consensus 101 ~~~--~-~-~~~~~~~l~~~~l~~~~~~~~~gl~~-~~~~~~~~LSgGq~qr----v~lAral~~~p~lllLDEPts~LD 171 (243)
T 1mv5_A 101 EGD--Y-T-DEDLWQVLDLAFARSFVENMPDQLNT-EVGERGVKISGGQRQR----LAIARAFLRNPKILMLDEATASLD 171 (243)
T ss_dssp TSC--S-C-HHHHHHHHHHHTCTTTTTSSTTGGGC-EESTTSBCCCHHHHHH----HHHHHHHHHCCSEEEEECCSCSSC
T ss_pred cCC--C-C-HHHHHHHHHHhChHHHHHhCccchhc-hhccCcCcCCHHHHHH----HHHHHHHhcCCCEEEEECCcccCC
Confidence 221 1 1 12222333332211 1221 1233467899999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
+.++ .+..+|+++.+ +.+++..+|++...++ ++.+.+++.|++++.++.
T Consensus 172 ~~~~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~ 221 (243)
T 1mv5_A 172 SESESMVQKALDSLMK-GRTTLVIAHRLSTIVD-ADKIYFIEKGQITGSGKH 221 (243)
T ss_dssp SSSCCHHHHHHHHHHT-TSEEEEECCSHHHHHH-CSEEEEEETTEECCCSCH
T ss_pred HHHHHHHHHHHHHhcC-CCEEEEEeCChHHHHh-CCEEEEEECCEEEEeCCH
Confidence 9999 99999999885 4566777888887776 667777888888765544
No 34
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.85 E-value=3e-22 Score=202.72 Aligned_cols=183 Identities=14% Similarity=0.106 Sum_probs=137.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc-eeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ-TLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~-~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++++|+++||||+||||||||+++|+|++. .|.+.+.|...... ...++..++|++|...+|+ .++.+++..+.
T Consensus 76 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~---~Tv~eNi~~~~ 152 (306)
T 3nh6_A 76 TVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN---DTIADNIRYGR 152 (306)
T ss_dssp EECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS---EEHHHHHHTTS
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCc---ccHHHHHHhhc
Confidence 578999999999999999999999999987 79999999765332 1234567999999877763 47888998875
Q ss_pred CCcchhhhHHHHHHHHHHhCCcc--------chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRH--------VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~--------~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
..... ..+..+++.+... ++.. ........|||||+|| ++|||||+.+|++| ||++||
T Consensus 153 ~~~~~-----~~~~~~~~~~~l~~~i~~lp~gl~t-~~~~~g~~LSGGqrQR----vaiARAL~~~p~iLlLDEPts~LD 222 (306)
T 3nh6_A 153 VTAGN-----DEVEAAAQAAGIHDAIMAFPEGYRT-QVGERGLKLSGGEKQR----VAIARTILKAPGIILLDEATSALD 222 (306)
T ss_dssp TTCCH-----HHHHHHHHHHTCHHHHHHSTTGGGC-EESTTSBCCCHHHHHH----HHHHHHHHHCCSEEEEECCSSCCC
T ss_pred ccCCH-----HHHHHHHHHhCcHHHHHhccchhhh-HhcCCcCCCCHHHHHH----HHHHHHHHhCCCEEEEECCcccCC
Confidence 43211 1122222222211 2222 2233456899999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
+.++ .+..+|+.+..++ +++..+|.+..... ++.+.+++.|++++.++.+.
T Consensus 223 ~~~~~~i~~~l~~l~~~~-Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~G~~~e 274 (306)
T 3nh6_A 223 TSNERAIQASLAKVCANR-TTIVVAHRLSTVVN-ADQILVIKDGCIVERGRHEA 274 (306)
T ss_dssp HHHHHHHHHHHHHHHTTS-EEEEECCSHHHHHT-CSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHcCCC-EEEEEEcChHHHHc-CCEEEEEECCEEEEECCHHH
Confidence 9999 9999999998775 45567899998887 67777888899888665543
No 35
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.85 E-value=1.5e-21 Score=193.42 Aligned_cols=179 Identities=15% Similarity=0.098 Sum_probs=132.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++++|++++|+|+||||||||+++|+|+.. .|.+.+.|..... ....++..++|++|...+|+ .++.+++..+..
T Consensus 42 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~---~tv~enl~~~~~ 118 (260)
T 2ghi_A 42 FIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN---ETIKYNILYGKL 118 (260)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS---EEHHHHHHTTCT
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc---cCHHHHHhccCC
Confidence 578999999999999999999999999976 7999999976432 11223567899998776664 377888876532
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHh----------hccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCC
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVC----------KINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGL 369 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~----------~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGL 369 (509)
.. . ...+..+.+.+. +.+.. ....+..|||||+|| ++||+||+.+|.++ ||+||
T Consensus 119 ~~----~-~~~~~~~l~~~~---l~~~~~~l~~~~~~~~~~~~~~LSgGqkqR----v~lAraL~~~p~lllLDEPts~L 186 (260)
T 2ghi_A 119 DA----T-DEEVIKATKSAQ---LYDFIEALPKKWDTIVGNKGMKLSGGERQR----IAIARCLLKDPKIVIFDEATSSL 186 (260)
T ss_dssp TC----C-HHHHHHHHHHTT---CHHHHHTSTTGGGCEESSSSBCCCHHHHHH----HHHHHHHHHCCSEEEEECCCCTT
T ss_pred CC----C-HHHHHHHHHHhC---CHHHHHhccccccccccCCcCcCCHHHHHH----HHHHHHHHcCCCEEEEECccccC
Confidence 11 1 112222333332 22211 123467899999999 99999999999998 99999
Q ss_pred CHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 370 PDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 370 D~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
|+..+ .+..+|+++.+| .+++..+|++...+. ++.+.+++.|++++.++.
T Consensus 187 D~~~~~~i~~~l~~l~~~-~tviivtH~~~~~~~-~d~i~~l~~G~i~~~g~~ 237 (260)
T 2ghi_A 187 DSKTEYLFQKAVEDLRKN-RTLIIIAHRLSTISS-AESIILLNKGKIVEKGTH 237 (260)
T ss_dssp CHHHHHHHHHHHHHHTTT-SEEEEECSSGGGSTT-CSEEEEEETTEEEEEECH
T ss_pred CHHHHHHHHHHHHHhcCC-CEEEEEcCCHHHHHh-CCEEEEEECCEEEEECCH
Confidence 99999 999999999775 566777888887776 666777888888765443
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.84 E-value=5.1e-22 Score=207.28 Aligned_cols=195 Identities=12% Similarity=0.039 Sum_probs=143.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCcccccce-eeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHFQT-LIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~~~-~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++++|++++|+|||||||||||++|+|+.. .|.+.+.|....... ...++.+++++|...+|+ .++.+++.....
T Consensus 43 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~---~tv~enl~~~~~ 119 (390)
T 3gd7_A 43 SISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS---GTFRKNLDPNAA 119 (390)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS---EEHHHHHCTTCC
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc---cCHHHHhhhccc
Confidence 578999999999999999999999999987 789999997653221 123457999999888876 377777753211
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCC-----------CCccccCCCchHHHHHHHHHHcCCce----eCCC
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKP-----------KPYESQSRPPLALELLRAYCASRGYV----ASSG 368 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~-----------LSgGq~QR~~~~~~La~ALa~~p~lL----PtsG 368 (509)
. ....+..+++. ++|.. +..++|.. |||||+|| ++|||||+.+|++| |++|
T Consensus 120 ----~--~~~~v~~~l~~---~~L~~-~~~~~p~~l~~~i~~~g~~LSGGqrQR----valARAL~~~P~lLLLDEPts~ 185 (390)
T 3gd7_A 120 ----H--SDQEIWKVADE---VGLRS-VIEQFPGKLDFVLVDGGCVLSHGHKQL----MCLARSVLSKAKILLLDEPSAH 185 (390)
T ss_dssp ----S--CHHHHHHHHHH---TTCHH-HHTTSTTGGGCEECTTTTTSCHHHHHH----HHHHHHHHTTCCEEEEESHHHH
T ss_pred ----c--CHHHHHHHHHH---hCCHH-HHhhcccccccccccccccCCHHHHHH----HHHHHHHhcCCCEEEEeCCccC
Confidence 0 11223334444 44655 55666766 99999999 99999999999998 9999
Q ss_pred CCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccccCcCCCCCCCccHHHHhcc
Q 010472 369 LPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAEEVPAHGDRTTPVLEHVLDD 443 (509)
Q Consensus 369 LD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (509)
||+..+ .++.+|+.+..+ .+++..+|++....+ ++.++++..|+++..++.+....... .+....+++.
T Consensus 186 LD~~~~~~l~~~l~~~~~~-~tvi~vtHd~e~~~~-aDri~vl~~G~i~~~g~~~el~~~p~----~~~va~f~g~ 255 (390)
T 3gd7_A 186 LDPVTYQIIRRTLKQAFAD-CTVILCEARIEAMLE-CDQFLVIEENKVRQYDSILELYHYPA----DRFVAGFIGS 255 (390)
T ss_dssp SCHHHHHHHHHHHHTTTTT-SCEEEECSSSGGGTT-CSEEEEEETTEEEEESSHHHHHHCCS----BHHHHHHSSS
T ss_pred CCHHHHHHHHHHHHHHhCC-CEEEEEEcCHHHHHh-CCEEEEEECCEEEEECCHHHHHhCCC----chHHHhhcCC
Confidence 999999 999999987655 566777788766655 67788888899988666544333211 2455666654
No 37
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.84 E-value=1.5e-21 Score=193.74 Aligned_cols=174 Identities=10% Similarity=-0.059 Sum_probs=130.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCcccccceeeecCeEE-EEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHFQTLIISEKLV-LCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~~~~~~~~~i~-l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
+++ |++++|+|+||||||||+++|+|+.+ .|.+.+.|...... .. +..++ |++|...+ .+ ++.+++..+..
T Consensus 27 ~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~-~~-~~~i~~~v~Q~~~l--~~--tv~enl~~~~~ 99 (263)
T 2pjz_A 27 EVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKI-RN-YIRYSTNLPEAYEI--GV--TVNDIVYLYEE 99 (263)
T ss_dssp EEC-SSEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGC-SC-CTTEEECCGGGSCT--TS--BHHHHHHHHHH
T ss_pred EEC-CEEEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcch-HH-hhheEEEeCCCCcc--CC--cHHHHHHHhhh
Confidence 578 99999999999999999999999875 68899988654322 12 45688 88876543 33 66676654321
Q ss_pred CcchhhhHHHHHHHHHHhCCccchh-hHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIE-NVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AAR 377 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~ 377 (509)
.. . .....+..+.+.+ +|. + +..+.+..|||||+|| ++||+||+.+|+++ ||+|||+..+ .+.
T Consensus 100 ~~-~--~~~~~~~~~l~~~---gl~~~-~~~~~~~~LSgGqkqR----v~lAraL~~~p~lllLDEPts~LD~~~~~~l~ 168 (263)
T 2pjz_A 100 LK-G--LDRDLFLEMLKAL---KLGEE-ILRRKLYKLSAGQSVL----VRTSLALASQPEIVGLDEPFENVDAARRHVIS 168 (263)
T ss_dssp HT-C--CCHHHHHHHHHHT---TCCGG-GGGSBGGGSCHHHHHH----HHHHHHHHTCCSEEEEECTTTTCCHHHHHHHH
T ss_pred hc-c--hHHHHHHHHHHHc---CCChh-HhcCChhhCCHHHHHH----HHHHHHHHhCCCEEEEECCccccCHHHHHHHH
Confidence 00 0 1112233344444 565 5 5567788999999999 99999999999998 9999999999 999
Q ss_pred HHHHHhhcCCccEEEcCCCCChhhccch-hhHhhcccccccCCC
Q 010472 378 IILKDFIDGKLPHFEMPPGMSHEEVGME-DTQASSLLELHESDA 420 (509)
Q Consensus 378 ~lLkd~~~gkl~~~~~pp~~~~~~~~~~-~~~~~~~~~~~~~~~ 420 (509)
.+|+++.+ +++..+|++.....+++ .+.+++.|++++.++
T Consensus 169 ~~L~~~~~---tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~ 209 (263)
T 2pjz_A 169 RYIKEYGK---EGILVTHELDMLNLYKEYKAYFLVGNRLQGPIS 209 (263)
T ss_dssp HHHHHSCS---EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEE
T ss_pred HHHHHhcC---cEEEEEcCHHHHHHhcCceEEEEECCEEEEecC
Confidence 99999865 67777889888776667 778888888876543
No 38
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.83 E-value=6.6e-21 Score=186.24 Aligned_cols=167 Identities=15% Similarity=0.074 Sum_probs=120.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++++|++++|+|+||||||||+++|+|+.+ .|.+.+.| .++|++|...+ +. .++.+++..+..
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g------------~i~~v~Q~~~~-~~--~tv~enl~~~~~ 91 (237)
T 2cbz_A 27 SIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG------------SVAYVPQQAWI-QN--DSLRENILFGCQ 91 (237)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS------------CEEEECSSCCC-CS--EEHHHHHHTTSC
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC------------EEEEEcCCCcC-CC--cCHHHHhhCccc
Confidence 578999999999999999999999999987 78888877 37888886543 33 477888876542
Q ss_pred CcchhhhHHHHHHHHHHhCCcc---chhh----HhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRH---VIEN----VCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDE 372 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~---~L~~----~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~ 372 (509)
... . ....+.+.+... ++.. ......+..|||||+|| ++||+||+.+|+++ ||+|||+.
T Consensus 92 ~~~---~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqR----v~lAraL~~~p~lllLDEPts~LD~~ 161 (237)
T 2cbz_A 92 LEE---P---YYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQR----VSLARAVYSNADIYLFDDPLSAVDAH 161 (237)
T ss_dssp CCT---T---HHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHH----HHHHHHHHHCCSEEEEESTTTTSCHH
T ss_pred cCH---H---HHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHH----HHHHHHHhcCCCEEEEeCcccccCHH
Confidence 111 1 112222322211 1100 01245678899999999 99999999999998 99999999
Q ss_pred HH-HHHHHHH---HhhcCCccEEEcCCCCChhhccchhhHhhcccccccCC
Q 010472 373 TR-AARIILK---DFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESD 419 (509)
Q Consensus 373 ~r-~~~~lLk---d~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~ 419 (509)
.+ .+..+|. .+.+| .+++..+|++...++ ++.+.+++.|++++.+
T Consensus 162 ~~~~i~~~l~~~~~~~~~-~tviivtH~~~~~~~-~d~v~~l~~G~i~~~g 210 (237)
T 2cbz_A 162 VGKHIFENVIGPKGMLKN-KTRILVTHSMSYLPQ-VDVIIVMSGGKISEMG 210 (237)
T ss_dssp HHHHHHHHTTSTTSTTTT-SEEEEECSCSTTGGG-SSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHhhcCC-CEEEEEecChHHHHh-CCEEEEEeCCEEEEeC
Confidence 98 8888884 44444 566677788888776 5667778888887543
No 39
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.82 E-value=7.6e-21 Score=192.40 Aligned_cols=162 Identities=22% Similarity=0.303 Sum_probs=113.4
Q ss_pred CccccCcccccHHHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH-hcCCcEEEEEeCCCCCCHHH----HHH
Q 010472 58 EKLVLTPFEKNLDMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREI-DKYKRTLLLVNKADLLPFSV----RKR 132 (509)
Q Consensus 58 ~~~~lt~fE~nle~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~-~~~K~~iLVlNK~DL~p~~~----~~~ 132 (509)
.+.+...+++.-.++|+ +++++|+||+|+|+|+|.++.+ .+++|+..+ ..+++.|||+||+||+++.. .+.
T Consensus 66 ~~~i~~i~~R~~~l~R~---~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~ 141 (307)
T 1t9h_A 66 EGYLMEIKERTNELIRP---PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQA 141 (307)
T ss_dssp CEEEEEECCCSCEETTT---TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHH
T ss_pred ceEEEEEcchhhhhhHH---HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHH
Confidence 34556666776667775 7999999999999999999886 788888644 35899999999999998744 688
Q ss_pred HHHHHHhcCCeEEEeehhhhHHhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 010472 133 WAKYFKDHDILFVFWSAKAASAALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGK 212 (509)
Q Consensus 133 W~~yf~~~gi~~if~Sa~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~ 212 (509)
|.++|.+.|+.++++||. +|.++. +|+
T Consensus 142 ~~~~y~~~g~~v~~~sa~------~~~g~~-----------------------~L~------------------------ 168 (307)
T 1t9h_A 142 YAEDYRNIGYDVYLTSSK------DQDSLA-----------------------DII------------------------ 168 (307)
T ss_dssp HHHHHHHHTCCEEECCHH------HHTTCT-----------------------TTG------------------------
T ss_pred HHHHHHhCCCeEEEEecC------CCCCHH-----------------------HHH------------------------
Confidence 999999999999988875 232221 111
Q ss_pred CCcccccccccCccCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEee---CC--cccccceeeecCeEEEEeCCCc
Q 010472 213 SNVQSVDESFAGNVAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTST---PG--KTKHFQTLIISEKLVLCDCPGL 285 (509)
Q Consensus 213 ~~~~~~~~~~~~~~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~---~G--~t~~~~~~~~~~~i~l~d~pg~ 285 (509)
.+.+|++++|+|+||||||||||+|+|... .|.+.+ .| +|......... ...++|+||+
T Consensus 169 -------------~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~-~g~v~dtpg~ 234 (307)
T 1t9h_A 169 -------------PHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGF 234 (307)
T ss_dssp -------------GGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEET-TEEEESSCSC
T ss_pred -------------hhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcC-CEEEecCCCc
Confidence 133588999999999999999999999876 566665 44 33333222222 4567899998
Q ss_pred cCCCC
Q 010472 286 VFPSF 290 (509)
Q Consensus 286 ~~p~~ 290 (509)
....+
T Consensus 235 ~~~~l 239 (307)
T 1t9h_A 235 SSLEF 239 (307)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 75543
No 40
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.81 E-value=7.9e-21 Score=184.71 Aligned_cols=169 Identities=12% Similarity=0.075 Sum_probs=120.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++++|++++|+|+||||||||+++|+|+.+ .|.+.+.| .++|++|...+|+ . ++.+++..+..
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g------------~i~~v~q~~~~~~-~--tv~enl~~~~~ 94 (229)
T 2pze_A 30 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------RISFCSQFSWIMP-G--TIKENIIFGVS 94 (229)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS------------CEEEECSSCCCCS-B--CHHHHHHTTSC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC------------EEEEEecCCcccC-C--CHHHHhhccCC
Confidence 467899999999999999999999999987 78888877 3788888766665 2 77888877542
Q ss_pred CcchhhhHHHHHHHHHHhCC------ccchhh-HhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHH
Q 010472 304 PIDRMTEHRQAVQVVANRVP------RHVIEN-VCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDE 372 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~------~~~L~~-~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~ 372 (509)
.. . .....+.+.+. ...... ......+..|||||+|| ++||+||+.+|+++ ||+|||+.
T Consensus 95 ~~-~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqr----v~lAral~~~p~lllLDEPts~LD~~ 164 (229)
T 2pze_A 95 YD-E-----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRAR----ISLARAVYKDADLYLLDSPFGYLDVL 164 (229)
T ss_dssp CC-H-----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHH----HHHHHHHHSCCSEEEEESTTTTSCHH
T ss_pred cC-h-----HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHH----HHHHHHHhcCCCEEEEECcccCCCHH
Confidence 11 1 01111222221 111000 01122357899999999 99999999999998 99999999
Q ss_pred HH-HHHHH-HHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 373 TR-AARII-LKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 373 ~r-~~~~l-Lkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
++ .+..+ ++.+..| .+++..+|++...++ ++.+.+++.|++++.++.
T Consensus 165 ~~~~i~~~l~~~~~~~-~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~ 213 (229)
T 2pze_A 165 TEKEIFESCVCKLMAN-KTRILVTSKMEHLKK-ADKILILHEGSSYFYGTF 213 (229)
T ss_dssp HHHHHHHHCCCCCTTT-SEEEEECCCHHHHHH-CSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHHhhCC-CEEEEEcCChHHHHh-CCEEEEEECCEEEEECCH
Confidence 99 88775 4566555 466677888887776 666777788888765443
No 41
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.80 E-value=5.8e-20 Score=185.81 Aligned_cols=141 Identities=24% Similarity=0.322 Sum_probs=101.2
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-cCCcEEEEEeCCCCCCHH---HHHHHHHHHHhcCCeEEEeehhhhH
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLEAYAREID-KYKRTLLLVNKADLLPFS---VRKRWAKYFKDHDILFVFWSAKAAS 153 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-~~K~~iLVlNK~DL~p~~---~~~~W~~yf~~~gi~~if~Sa~~~~ 153 (509)
.+.++|++|+|+|+++|.++.. .+++|+..+. .++|+|||+||+||+++. ..+.|.++|.+.|+.++++||+
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~-~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~--- 151 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNY-LLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAK--- 151 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTT---
T ss_pred HHHhcCEEEEEEECCCCCCCHH-HHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECC---
Confidence 6899999999999999975442 5677776543 478999999999999875 2678999998889988889985
Q ss_pred HhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccccccCccCCCCcEE
Q 010472 154 AALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVDESFAGNVAPKNVIV 233 (509)
Q Consensus 154 ~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~v 233 (509)
+|. |.++|.+. ..|+++
T Consensus 152 ---~g~-----------------------gi~~L~~~-------------------------------------l~G~i~ 168 (302)
T 2yv5_A 152 ---TGE-----------------------GIDELVDY-------------------------------------LEGFIC 168 (302)
T ss_dssp ---TCT-----------------------THHHHHHH-------------------------------------TTTCEE
T ss_pred ---CCC-----------------------CHHHHHhh-------------------------------------ccCcEE
Confidence 333 23444332 247899
Q ss_pred EEEecCCCCHhHHHHHHhcCCc--ceEEee---CCc--ccccceeeecCeEEEEeCCCcc
Q 010472 234 GFVGYPNVGKSSTINALVGQKR--TGVTST---PGK--TKHFQTLIISEKLVLCDCPGLV 286 (509)
Q Consensus 234 glvG~nGaGKSTLln~L~G~~~--~g~~~~---~G~--t~~~~~~~~~~~i~l~d~pg~~ 286 (509)
+|+|+||||||||+|+|+ ... .|.+.+ .|. |.............++|+||+.
T Consensus 169 ~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~ 227 (302)
T 2yv5_A 169 ILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFS 227 (302)
T ss_dssp EEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCS
T ss_pred EEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcC
Confidence 999999999999999999 765 677777 563 2222222222345677889875
No 42
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.79 E-value=2.8e-20 Score=204.05 Aligned_cols=183 Identities=16% Similarity=0.114 Sum_probs=135.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++++|+++||+||||||||||+++|+|+.. .|.+.+.|..... ....++..+++++|...+|+. +..+++..|.
T Consensus 363 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~---tv~eni~~~~ 439 (578)
T 4a82_A 363 SIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD---TVKENILLGR 439 (578)
T ss_dssp EECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS---BHHHHHGGGC
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc---cHHHHHhcCC
Confidence 578999999999999999999999999987 7999999976532 222345679999998777653 7888988764
Q ss_pred CCcchhhhHHHHHHHHHHhCCcc--------chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRH--------VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~--------~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
.... .+.+..+++..... ++.. ........|||||+|| ++||||++.+|+++ ||+|||
T Consensus 440 ~~~~-----~~~~~~~~~~~~~~~~~~~lp~g~~t-~~~~~g~~LSgGq~Qr----v~lAral~~~p~illlDEpts~LD 509 (578)
T 4a82_A 440 PTAT-----DEEVVEAAKMANAHDFIMNLPQGYDT-EVGERGVKLSGGQKQR----LSIARIFLNNPPILILDEATSALD 509 (578)
T ss_dssp SSCC-----HHHHHHHHHHTTCHHHHHTSTTGGGC-BCCGGGTTSCHHHHHH----HHHHHHHHHCCSEEEEESTTTTCC
T ss_pred CCCC-----HHHHHHHHHHhCcHHHHHhCcchhhh-hhccCCCcCCHHHHHH----HHHHHHHHcCCCEEEEECccccCC
Confidence 3211 11222233322211 1111 1122345799999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
+.++ .+.+.|+.+.++++ ++..+|.++..+. ++.+.+++.|++++.++.+.
T Consensus 510 ~~~~~~i~~~l~~~~~~~t-~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~e 561 (578)
T 4a82_A 510 LESESIIQEALDVLSKDRT-TLIVAHRLSTITH-ADKIVVIENGHIVETGTHRE 561 (578)
T ss_dssp HHHHHHHHHHHHHHTTTSE-EEEECSSGGGTTT-CSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHcCCCE-EEEEecCHHHHHc-CCEEEEEECCEEEEECCHHH
Confidence 9999 99999999877764 4557899888877 56777788888887665543
No 43
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.79 E-value=1.3e-19 Score=199.45 Aligned_cols=181 Identities=14% Similarity=0.135 Sum_probs=136.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++++|++++|+|+||||||||+++|+|+.. .|.+.+.|..... ....++..+++++|...+|+ .+..+++..+.
T Consensus 377 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~---~tv~eni~~~~ 453 (598)
T 3qf4_B 377 HIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS---TTVKENLKYGN 453 (598)
T ss_dssp ECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS---SBHHHHHHSSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc---ccHHHHHhcCC
Confidence 578999999999999999999999999987 7999999976532 22234567999999877764 37888888763
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchhhHhhccCC-----------CCCCccccCCCchHHHHHHHHHHcCCce----eCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIENVCKINLP-----------KPKPYESQSRPPLALELLRAYCASRGYV----ASS 367 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~-----------~~LSgGq~QR~~~~~~La~ALa~~p~lL----Pts 367 (509)
.... + + .+.+.+...++.+ +....| ..|||||+|| ++|||||+.+|+++ ||+
T Consensus 454 ~~~~---~--~---~~~~~~~~~~~~~-~~~~~~~g~~t~~~~~g~~LSgGq~Qr----v~iAral~~~p~illlDEpts 520 (598)
T 3qf4_B 454 PGAT---D--E---EIKEAAKLTHSDH-FIKHLPEGYETVLTDNGEDLSQGQRQL----LAITRAFLANPKILILDEATS 520 (598)
T ss_dssp TTCC---T--T---HHHHHTTTTTCHH-HHHTSTTGGGCBCHHHHTTSCHHHHHH----HHHHHHHHTCCSEEEECCCCT
T ss_pred CCCC---H--H---HHHHHHHHhCCHH-HHHhccccccchhcCCCCCCCHHHHHH----HHHHHHHhcCCCEEEEECCcc
Confidence 2111 1 1 1223333333333 222223 5799999999 99999999999998 999
Q ss_pred CCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCccc
Q 010472 368 GLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDAE 424 (509)
Q Consensus 368 GLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (509)
+||+.+. .+.+.|+++.+|+ +++..+|.++..+. ++.+.+++.|++++.++.+..
T Consensus 521 ~LD~~~~~~i~~~l~~~~~~~-t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 576 (598)
T 3qf4_B 521 NVDTKTEKSIQAAMWKLMEGK-TSIIIAHRLNTIKN-ADLIIVLRDGEIVEMGKHDEL 576 (598)
T ss_dssp TCCHHHHHHHHHHHHHHHTTS-EEEEESCCTTHHHH-CSEEEEECSSSEEECSCHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCC-EEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHH
Confidence 9999999 9999999987664 55667899988877 667777788888877665443
No 44
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.79 E-value=1.3e-19 Score=199.46 Aligned_cols=185 Identities=16% Similarity=0.175 Sum_probs=135.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++++|++++|+|+||||||||+++|+|+.. .|.+.+.|..... ....++..+++++|...+|+ .+..+++..+.
T Consensus 366 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~---~tv~eni~~~~ 442 (595)
T 2yl4_A 366 SIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS---CSIAENIAYGA 442 (595)
T ss_dssp EECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCS---SBHHHHHHTTS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccC---CCHHHHHhhcC
Confidence 578999999999999999999999999987 7999999976432 12224457999999877765 37888888764
Q ss_pred CCcchhhhHHHHHHHHHHhCCccc--------hhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHV--------IENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~--------L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
...... ..+.+..+++.+.... +.. .....+..|||||+|| ++|||||+.+|+++ ||++||
T Consensus 443 ~~~~~~--~~~~~~~~~~~~~l~~~~~~l~~g~~~-~~~~~~~~LSgGq~qr----v~iAral~~~p~illlDEpts~LD 515 (595)
T 2yl4_A 443 DDPSSV--TAEEIQRVAEVANAVAFIRNFPQGFNT-VVGEKGVLLSGGQKQR----IAIARALLKNPKILLLDEATSALD 515 (595)
T ss_dssp SSTTTS--CHHHHHHHHHHTTCHHHHHTSSSGGGC-BCSSSSCCCCHHHHHH----HHHHHHHHHCCSEEEEECCCSSCC
T ss_pred CCcccc--CHHHHHHHHHHcCCHHHHHhCcccccc-cccCCCCcCCHHHHHH----HHHHHHHHcCCCEEEEECcccCCC
Confidence 320001 1123333444433211 111 1112347899999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
+.++ .+.+.|+++.+|+ +++..+|.++..+. ++.+.+++.|++++.++.+
T Consensus 516 ~~~~~~i~~~l~~~~~~~-tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 566 (595)
T 2yl4_A 516 AENEYLVQEALDRLMDGR-TVLVIAHRLSTIKN-ANMVAVLDQGKITEYGKHE 566 (595)
T ss_dssp HHHHHHHHHHHHHHHTTS-EEEEECCCHHHHHH-SSEEEEEETTEEEEEECSC
T ss_pred HHHHHHHHHHHHHHhcCC-EEEEEecCHHHHHc-CCEEEEEECCEEEEECCHH
Confidence 9999 9999999998764 56667888887776 5667777888888755543
No 45
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.79 E-value=8e-20 Score=200.59 Aligned_cols=183 Identities=14% Similarity=0.104 Sum_probs=134.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++++|++++|+|+||||||||+++|+|+.. .|.+.+.|..... ....++..+++++|...+|+ .+..+++..+.
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~---~tv~eni~~~~ 441 (582)
T 3b60_A 365 KIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFN---DTVANNIAYAR 441 (582)
T ss_dssp EECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS---SBHHHHHHTTT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCC---CCHHHHHhccC
Confidence 578999999999999999999999999987 7999999976432 11223457999999877765 27888888764
Q ss_pred CCcchhhhHHHHHHHHHHhCCcc--------chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRH--------VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~--------~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
.+. . . .+.+..+++.+... ++.. ........|||||+|| ++|||||+.+|+++ ||++||
T Consensus 442 ~~~--~-~-~~~~~~~l~~~~l~~~~~~~p~g~~~-~~~~~~~~LSgGq~qr----l~iAral~~~p~illlDEpts~LD 512 (582)
T 3b60_A 442 TEE--Y-S-REQIEEAARMAYAMDFINKMDNGLDT-IIGENGVLLSGGQRQR----IAIARALLRDSPILILDEATSALD 512 (582)
T ss_dssp TSC--C-C-HHHHHHHHHTTTCHHHHHHSTTGGGS-BCCTTSCSSCHHHHHH----HHHHHHHHHCCSEEEEETTTSSCC
T ss_pred CCC--C-C-HHHHHHHHHHcCCHHHHHhccccccc-cccCCCCCCCHHHHHH----HHHHHHHHhCCCEEEEECccccCC
Confidence 221 1 1 12233333333321 1111 1122356899999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
+.++ .+.+.|+++.+|+ +++..+|.++..+. ++.+.+++.|++++.++.+
T Consensus 513 ~~~~~~i~~~l~~~~~~~-tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b60_A 513 TESERAIQAALDELQKNR-TSLVIAHRLSTIEQ-ADEIVVVEDGIIVERGTHS 563 (582)
T ss_dssp HHHHHHHHHHHHHHHTTS-EEEEECSCGGGTTT-CSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHHHHhCCC-EEEEEeccHHHHHh-CCEEEEEECCEEEEecCHH
Confidence 9999 9999999988765 45666788877775 5667777888888755443
No 46
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.79 E-value=6.7e-20 Score=201.20 Aligned_cols=184 Identities=16% Similarity=0.139 Sum_probs=134.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++++|++++|+|+||||||||+++|+|+.. .|.+.+.|..... ....++..+++++|...+|+ .+..+++..+.
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~---~tv~eni~~~~ 441 (582)
T 3b5x_A 365 SIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN---DTIANNIAYAA 441 (582)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCcccc---ccHHHHHhccC
Confidence 578999999999999999999999999987 7999999976432 22234567999999877765 37788888764
Q ss_pred CCcchhhhHHHHHHHHHHhCCcc--------chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRH--------VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~--------~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
.+. . . .+.+..+++.+... ++.. ........|||||+|| ++|||||+.+|+++ ||++||
T Consensus 442 ~~~--~-~-~~~~~~~~~~~~l~~~~~~~p~g~~t-~~~~~~~~LSgGq~qr----~~iAral~~~p~illlDEpts~LD 512 (582)
T 3b5x_A 442 EGE--Y-T-REQIEQAARQAHAMEFIENMPQGLDT-VIGENGTSLSGGQRQR----VAIARALLRDAPVLILDEATSALD 512 (582)
T ss_pred CCC--C-C-HHHHHHHHHHCCCHHHHHhCcccccc-hhcCCCCcCCHHHHHH----HHHHHHHHcCCCEEEEECccccCC
Confidence 221 1 1 12233333333211 1111 1122346899999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
+.++ .+.+.|+++.+|+ +++...|.++..+. ++.+.+++.|++++.++.+.
T Consensus 513 ~~~~~~i~~~l~~~~~~~-tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 564 (582)
T 3b5x_A 513 TESERAIQAALDELQKNK-TVLVIAHRLSTIEQ-ADEILVVDEGEIIERGRHAD 564 (582)
T ss_pred HHHHHHHHHHHHHHcCCC-EEEEEecCHHHHHh-CCEEEEEECCEEEEECCHHH
Confidence 9999 9999999987765 45556788877775 56677788888887655443
No 47
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.78 E-value=8.8e-20 Score=183.43 Aligned_cols=165 Identities=13% Similarity=0.099 Sum_probs=118.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++++|++++|+|+||||||||+++|+|+.+ .|.+.+.| .++|++|...+|+ . ++.+++. +..
T Consensus 60 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------------~i~~v~Q~~~l~~-~--tv~enl~-~~~ 123 (290)
T 2bbs_A 60 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------RISFCSQNSWIMP-G--TIKENII-GVS 123 (290)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS------------CEEEECSSCCCCS-S--BHHHHHH-TTC
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC------------EEEEEeCCCccCc-c--cHHHHhh-Ccc
Confidence 578999999999999999999999999987 68888776 3788888766665 2 6777777 432
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHh----------hccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCC
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVC----------KINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGL 369 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~----------~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGL 369 (509)
. .. .....+.+.+. +.+.+ ....+..|||||+|| ++||+||+.+|+++ ||+||
T Consensus 124 ~-~~-----~~~~~~~~~~~---l~~~l~~~~~~~~~~~~~~~~~LSgGq~QR----v~lAraL~~~p~lllLDEPts~L 190 (290)
T 2bbs_A 124 Y-DE-----YRYRSVIKACQ---LEEDISKFAEKDNIVLGEGGITLSGGQRAR----ISLARAVYKDADLYLLDSPFGYL 190 (290)
T ss_dssp C-CH-----HHHHHHHHHTT---CHHHHHTSTTGGGCBC----CCCCHHHHHH----HHHHHHHHSCCSEEEEESTTTTC
T ss_pred c-ch-----HHHHHHHHHhC---hHHHHHhccccccchhcCccCcCCHHHHHH----HHHHHHHHCCCCEEEEECCcccC
Confidence 1 11 11111222222 21111 112346899999999 99999999999998 99999
Q ss_pred CHHHH-HHHHH-HHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 370 PDETR-AARII-LKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 370 D~~~r-~~~~l-Lkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
|+..+ .+..+ ++.+..| .+++..+|++...++ ++.+.++..|+++..++.
T Consensus 191 D~~~~~~i~~~ll~~~~~~-~tviivtHd~~~~~~-~d~i~~l~~G~i~~~g~~ 242 (290)
T 2bbs_A 191 DVLTEKEIFESCVCKLMAN-KTRILVTSKMEHLKK-ADKILILHEGSSYFYGTF 242 (290)
T ss_dssp CHHHHHHHHHHCCCCCTTT-SEEEEECCCHHHHHH-SSEEEEEETTEEEEEECH
T ss_pred CHHHHHHHHHHHHHHhhCC-CEEEEEecCHHHHHc-CCEEEEEECCeEEEeCCH
Confidence 99999 88775 4555554 467777898887776 566777788888765444
No 48
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.76 E-value=2.3e-19 Score=197.13 Aligned_cols=183 Identities=11% Similarity=0.034 Sum_probs=135.5
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc-eeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ-TLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~-~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++++|++++|+|+||||||||+++|+|+.. .|.+.++|...... ...++..+++++|...+|+ .+..+++..+.
T Consensus 365 ~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~---~tv~eni~~~~ 441 (587)
T 3qf4_A 365 SVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFS---GTIKENLKWGR 441 (587)
T ss_dssp EECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCS---EEHHHHHTTTC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcC---ccHHHHHhccC
Confidence 578999999999999999999999999987 79999999875332 2234567999999877764 37888887764
Q ss_pred CCcchhhhHHHHHHHHHHhCCc--------cchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPR--------HVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~--------~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
..... +.+..+++.... .++.. .....+..|||||+|| ++|||||+.+|+++ ||++||
T Consensus 442 ~~~~~-----~~~~~~~~~~~~~~~i~~l~~g~~~-~~~~~~~~LSgGqrQr----v~lARal~~~p~illlDEpts~LD 511 (587)
T 3qf4_A 442 EDATD-----DEIVEAAKIAQIHDFIISLPEGYDS-RVERGGRNFSGGQKQR----LSIARALVKKPKVLILDDCTSSVD 511 (587)
T ss_dssp SSCCH-----HHHHHHHHHTTCHHHHHTSSSGGGC-EECSSSCSSCHHHHHH----HHHHHHHHTCCSEEEEESCCTTSC
T ss_pred CCCCH-----HHHHHHHHHhCcHHHHHhcccchhh-HhcCCCCCcCHHHHHH----HHHHHHHHcCCCEEEEECCcccCC
Confidence 32111 111122222211 13332 2344567899999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCcc
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASDA 423 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
+.++ .+.+.|+++.+|+ +++..+|.++.... ++.+.+++.|++++.++.+.
T Consensus 512 ~~~~~~i~~~l~~~~~~~-tvi~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~e 563 (587)
T 3qf4_A 512 PITEKRILDGLKRYTKGC-TTFIITQKIPTALL-ADKILVLHEGKVAGFGTHKE 563 (587)
T ss_dssp HHHHHHHHHHHHHHSTTC-EEEEEESCHHHHTT-SSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHHHHHhCCCC-EEEEEecChHHHHh-CCEEEEEECCEEEEECCHHH
Confidence 9999 9999999987665 45667788877774 66777788888887665543
No 49
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.76 E-value=4.5e-19 Score=192.53 Aligned_cols=167 Identities=14% Similarity=0.085 Sum_probs=127.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++.+|+++||+|+||||||||+++|+|+.+ .|.+.+.+. .+.++++... +.+..++.+++.....
T Consensus 290 ~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~i~~~~q~~~--~~~~~tv~~~l~~~~~ 356 (538)
T 3ozx_A 290 EAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ-----------ILSYKPQRIF--PNYDGTVQQYLENASK 356 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC-----------CEEEECSSCC--CCCSSBHHHHHHHHCS
T ss_pred eECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe-----------eeEeechhcc--cccCCCHHHHHHHhhh
Confidence 367899999999999999999999999987 677765432 3566666432 3334466666544221
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARI 378 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~ 378 (509)
.. ... ....+.+.+..+++.. +..+.+..|||||+|| ++||+||+.+|.+| ||+|||..++ .+..
T Consensus 357 ~~--~~~---~~~~~~~~l~~~~l~~-~~~~~~~~LSGGq~QR----v~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ 426 (538)
T 3ozx_A 357 DA--LST---SSWFFEEVTKRLNLHR-LLESNVNDLSGGELQK----LYIAATLAKEADLYVLDQPSSYLDVEERYIVAK 426 (538)
T ss_dssp ST--TCT---TSHHHHHTTTTTTGGG-CTTSBGGGCCHHHHHH----HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred hc--cch---hHHHHHHHHHHcCCHH-HhcCChhhCCHHHHHH----HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 11 001 0123456677777876 6778889999999999 99999999999998 9999999999 9999
Q ss_pred HHHHhhc-CCccEEEcCCCCChhhccchhhHhhccccc
Q 010472 379 ILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASSLLEL 415 (509)
Q Consensus 379 lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~ 415 (509)
+|+++.+ .+.+++...|++..+..+|+.+.+++++..
T Consensus 427 ~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~ 464 (538)
T 3ozx_A 427 AIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPE 464 (538)
T ss_dssp HHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETT
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 9999864 567788889999999988888888876543
No 50
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.75 E-value=7.7e-18 Score=174.85 Aligned_cols=154 Identities=28% Similarity=0.345 Sum_probs=119.2
Q ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCH----HHHHHHHH-HHHhcCC--
Q 010472 70 DMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPF----SVRKRWAK-YFKDHDI-- 142 (509)
Q Consensus 70 e~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~----~~~~~W~~-yf~~~gi-- 142 (509)
.+.+.|..+.+.+|+||+|+|+++|..++.+.+.+++ .++|+|+|+||+||++. +....|.. ++++.|+
T Consensus 60 ~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~ 135 (369)
T 3ec1_A 60 DFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCP 135 (369)
T ss_dssp HHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCc
Confidence 3555555666999999999999999999999998775 37899999999999986 34567865 4677776
Q ss_pred -eEEEeehhhhHHhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCccccccc
Q 010472 143 -LFVFWSAKAASAALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVDES 221 (509)
Q Consensus 143 -~~if~Sa~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~ 221 (509)
.++++||+ +|. |.++|++.+....
T Consensus 136 ~~v~~iSA~------~g~-----------------------gi~~L~~~I~~~~-------------------------- 160 (369)
T 3ec1_A 136 VDVCLVSAA------KGI-----------------------GMAKVMEAINRYR-------------------------- 160 (369)
T ss_dssp SEEEECBTT------TTB-----------------------THHHHHHHHHHHH--------------------------
T ss_pred ccEEEEECC------CCC-----------------------CHHHHHHHHHhhc--------------------------
Confidence 56778875 232 4457776665321
Q ss_pred ccCccCCCCcEEEEEecCCCCHhHHHHHHhcC-----CcceEEeeCCcccccceeeecCeEEEEeCCCccCCC
Q 010472 222 FAGNVAPKNVIVGFVGYPNVGKSSTINALVGQ-----KRTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPS 289 (509)
Q Consensus 222 ~~~~~i~~g~~vglvG~nGaGKSTLln~L~G~-----~~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~ 289 (509)
.+..++++|.+|+|||||+|.|+|. ....++.++|+|+......+...+.++|+||+..+.
T Consensus 161 -------~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~ 226 (369)
T 3ec1_A 161 -------EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHH 226 (369)
T ss_dssp -------TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCS
T ss_pred -------ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHH
Confidence 1346899999999999999999997 346678899999887776677779999999998654
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.75 E-value=6.2e-19 Score=191.63 Aligned_cols=161 Identities=11% Similarity=0.031 Sum_probs=122.5
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccCC
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVLP 304 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~~ 304 (509)
+.+|+++||+|+||||||||+++|+|+.+ .|.+.+ ...++|++|....++.+ ++.+++......
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~------------~~~i~~v~Q~~~~~~~~--tv~~~~~~~~~~ 374 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW------------DLTVAYKPQYIKADYEG--TVYELLSKIDAS 374 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC------------CCCEEEECSSCCCCCSS--BHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE------------CceEEEEecCCcCCCCC--cHHHHHHhhhcc
Confidence 46899999999999999999999999986 565543 23578888866554444 455544321000
Q ss_pred cchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHHH
Q 010472 305 IDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARII 379 (509)
Q Consensus 305 ~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~l 379 (509)
... ....+.+.+..+++.. +..+.+..|||||+|| +.||+||+.+|.+| ||+|||..++ .+..+
T Consensus 375 --~~~----~~~~~~~~l~~~~l~~-~~~~~~~~LSGGe~qr----v~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~ 443 (538)
T 1yqt_A 375 --KLN----SNFYKTELLKPLGIID-LYDREVNELSGGELQR----VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRA 443 (538)
T ss_dssp --HHT----CHHHHHHTTTTTTCGG-GTTSBGGGCCHHHHHH----HHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHH
T ss_pred --CCC----HHHHHHHHHHHcCChh-hhcCChhhCCHHHHHH----HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 000 1234556777777876 6677888999999999 99999999999998 9999999999 99999
Q ss_pred HHHhh-cCCccEEEcCCCCChhhccchhhHhhcc
Q 010472 380 LKDFI-DGKLPHFEMPPGMSHEEVGMEDTQASSL 412 (509)
Q Consensus 380 Lkd~~-~gkl~~~~~pp~~~~~~~~~~~~~~~~~ 412 (509)
|+++. +.+.+++...|++.....+++.+.++++
T Consensus 444 l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~ 477 (538)
T 1yqt_A 444 IRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEG 477 (538)
T ss_dssp HHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 99986 3355677788999998877777777765
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.74 E-value=5.3e-19 Score=194.48 Aligned_cols=161 Identities=11% Similarity=0.032 Sum_probs=119.6
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccCC
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVLP 304 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~~ 304 (509)
+.+|+++||+|+||||||||+++|+|+.+ .|.+.+ ...++|++|....++.+ ++.+++......
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~------------~~~i~~v~Q~~~~~~~~--tv~e~~~~~~~~ 444 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW------------DLTVAYKPQYIKAEYEG--TVYELLSKIDSS 444 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC------------CCCEEEECSSCCCCCSS--BHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE------------eeEEEEEecCccCCCCC--cHHHHHHhhhcc
Confidence 46899999999999999999999999986 455543 23578888865554444 455554332010
Q ss_pred cchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHHH
Q 010472 305 IDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARII 379 (509)
Q Consensus 305 ~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~l 379 (509)
.... . ..+.+.+..+++.+ +..+.+..|||||+|| +.||+||+.+|.+| ||+|||..++ .+..+
T Consensus 445 --~~~~-~---~~~~~~l~~~~l~~-~~~~~~~~LSGGe~QR----v~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~ 513 (607)
T 3bk7_A 445 --KLNS-N---FYKTELLKPLGIID-LYDRNVEDLSGGELQR----VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRA 513 (607)
T ss_dssp --HHHC-H---HHHHHTHHHHTCTT-TTTSBGGGCCHHHHHH----HHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHH
T ss_pred --CCCH-H---HHHHHHHHHcCCch-HhcCChhhCCHHHHHH----HHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 0001 1 22333444445655 5567788999999999 99999999999998 9999999999 99999
Q ss_pred HHHhh-cCCccEEEcCCCCChhhccchhhHhhcc
Q 010472 380 LKDFI-DGKLPHFEMPPGMSHEEVGMEDTQASSL 412 (509)
Q Consensus 380 Lkd~~-~gkl~~~~~pp~~~~~~~~~~~~~~~~~ 412 (509)
|+++. +.+.+++...|++..+...++.+.++++
T Consensus 514 l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~ 547 (607)
T 3bk7_A 514 IRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG 547 (607)
T ss_dssp HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 99986 3456677788999998877777777775
No 53
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.6e-18 Score=188.81 Aligned_cols=175 Identities=13% Similarity=0.074 Sum_probs=123.1
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccCCc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVLPI 305 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~~~ 305 (509)
.+..|+++||+|+||||||||+++|+|+.+... |... ....+++++|.... .+..++.+++.......
T Consensus 374 ~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~----G~~~------~~~~i~~~~q~~~~--~~~~tv~e~~~~~~~~~ 441 (608)
T 3j16_B 374 EFSDSEILVMMGENGTGKTTLIKLLAGALKPDE----GQDI------PKLNVSMKPQKIAP--KFPGTVRQLFFKKIRGQ 441 (608)
T ss_dssp ECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSB----CCCC------CSCCEEEECSSCCC--CCCSBHHHHHHHHCSST
T ss_pred ccccceEEEEECCCCCcHHHHHHHHhcCCCCCC----CcCc------cCCcEEEecccccc--cCCccHHHHHHHHhhcc
Confidence 345568999999999999999999999987321 1111 12346777764322 23336666654433211
Q ss_pred chhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHHHH
Q 010472 306 DRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARIIL 380 (509)
Q Consensus 306 ~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~lL 380 (509)
... ..... +.+..++|.+ +..+.+..|||||+|| ++||+||+.+|.+| ||+|||+.++ .+..+|
T Consensus 442 --~~~-~~~~~---~~l~~l~l~~-~~~~~~~~LSGGqkQR----v~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll 510 (608)
T 3j16_B 442 --FLN-PQFQT---DVVKPLRIDD-IIDQEVQHLSGGELQR----VAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVI 510 (608)
T ss_dssp --TTS-HHHHH---HTHHHHTSTT-TSSSBSSSCCHHHHHH----HHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHH
T ss_pred --ccc-HHHHH---HHHHHcCChh-hhcCChhhCCHHHHHH----HHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 111 12222 3333344555 5677889999999999 99999999999998 9999999999 999999
Q ss_pred HHhh-cCCccEEEcCCCCChhhccchhhHhhcc--cccccCCCCcc
Q 010472 381 KDFI-DGKLPHFEMPPGMSHEEVGMEDTQASSL--LELHESDASDA 423 (509)
Q Consensus 381 kd~~-~gkl~~~~~pp~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 423 (509)
+++. +.+.+++..+|++..+...++++.++++ |.++..++.+.
T Consensus 511 ~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~ 556 (608)
T 3j16_B 511 RRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPES 556 (608)
T ss_dssp HHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEE
T ss_pred HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHH
Confidence 9985 4456778889999999888888888886 56655444433
No 54
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.72 E-value=1.6e-17 Score=172.50 Aligned_cols=154 Identities=29% Similarity=0.397 Sum_probs=112.2
Q ss_pred HHHHHHHH-HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHH----HHHHHHHH-HHhcCC-
Q 010472 70 DMWRQLWR-VLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFS----VRKRWAKY-FKDHDI- 142 (509)
Q Consensus 70 e~wrql~r-vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~----~~~~W~~y-f~~~gi- 142 (509)
|-++.+++ +.+.+|+||+|+|+++|..++.+.+.+++ .++|+|||+||+||++.+ ....|..+ +++.|+
T Consensus 57 e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~ 132 (368)
T 3h2y_A 57 DDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFV----GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLK 132 (368)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHS----SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHh----CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCC
Confidence 44455555 44566699999999999988888887764 378999999999998864 45678654 566777
Q ss_pred --eEEEeehhhhHHhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccc
Q 010472 143 --LFVFWSAKAASAALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVDE 220 (509)
Q Consensus 143 --~~if~Sa~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~~~~~~~~~ 220 (509)
.++++||+ +|. |.++|++.+....
T Consensus 133 ~~~v~~iSA~------~g~-----------------------gi~~L~~~l~~~~------------------------- 158 (368)
T 3h2y_A 133 PEDVFLISAA------KGQ-----------------------GIAELADAIEYYR------------------------- 158 (368)
T ss_dssp CSEEEECCTT------TCT-----------------------THHHHHHHHHHHH-------------------------
T ss_pred cccEEEEeCC------CCc-----------------------CHHHHHhhhhhhc-------------------------
Confidence 67778875 333 4457776665321
Q ss_pred cccCccCCCCcEEEEEecCCCCHhHHHHHHhcCC------cceEEeeCCcccccceeeecCeEEEEeCCCccCCC
Q 010472 221 SFAGNVAPKNVIVGFVGYPNVGKSSTINALVGQK------RTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPS 289 (509)
Q Consensus 221 ~~~~~~i~~g~~vglvG~nGaGKSTLln~L~G~~------~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~ 289 (509)
.+..++++|.+|+|||||+|.|.|.. ...++..+|+|++.....+...+.++|+||+..+.
T Consensus 159 --------~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~ 225 (368)
T 3h2y_A 159 --------GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHH 225 (368)
T ss_dssp --------TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTT
T ss_pred --------ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHH
Confidence 13468999999999999999999863 24578889999887776666678999999998654
No 55
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.70 E-value=1.8e-17 Score=196.44 Aligned_cols=187 Identities=15% Similarity=0.105 Sum_probs=133.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
.+++|+++||+|+||||||||+++|+|+.. .|.+.+.|..... ....++..+++++|...+|+ .+..+++..+.
T Consensus 1055 ~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~---~ti~eNi~~~~ 1131 (1284)
T 3g5u_A 1055 EVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD---CSIAENIAYGD 1131 (1284)
T ss_dssp EECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCS---SBHHHHHTCCC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCcccc---ccHHHHHhccC
Confidence 578999999999999999999999999987 7999999987543 22234677999999877654 47888887764
Q ss_pred CCcc-hhhhHHHHHHH--HHHhCCcc--chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHH
Q 010472 303 LPID-RMTEHRQAVQV--VANRVPRH--VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDET 373 (509)
Q Consensus 303 ~~~~-~~~~~~~~~~~--i~~~l~~~--~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~ 373 (509)
.... .........+. +.+.+..+ ++.. ........|||||+|| ++|||||+.+|++| ||+|||..+
T Consensus 1132 ~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt-~vge~G~~LSgGq~Qr----v~iARal~~~p~iLiLDEpTs~lD~~~ 1206 (1284)
T 3g5u_A 1132 NSRVVSYEEIVRAAKEANIHQFIDSLPDKYNT-RVGDKGTQLSGGQKQR----IAIARALVRQPHILLLDEATSALDTES 1206 (1284)
T ss_dssp SSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGC-BCSTTSCSSCHHHHHH----HHHHHHHHHCCSSEEEESCSSSCCHHH
T ss_pred CCCCCCHHHHHHHHHHhCcHHHHHhCcccccc-ccCCCCCccCHHHHHH----HHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 3211 11011111111 11111111 1111 1112245799999999 99999999999998 999999999
Q ss_pred H-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 374 R-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 374 r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
. .+.+.|+.+..| .+++...|.++.... ++.+.+++.|++++.++.+
T Consensus 1207 ~~~i~~~l~~~~~~-~tvi~isH~l~~i~~-~dri~vl~~G~i~~~g~~~ 1254 (1284)
T 3g5u_A 1207 EKVVQEALDKAREG-RTCIVIAHRLSTIQN-ADLIVVIQNGKVKEHGTHQ 1254 (1284)
T ss_dssp HHHHHHHHHHHSSS-SCEEEECSCTTGGGS-CSEEEEEETBEEEEEECHH
T ss_pred HHHHHHHHHHhCCC-CEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHH
Confidence 9 899999887665 456677788888876 6777788888888866543
No 56
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.68 E-value=1.2e-16 Score=161.27 Aligned_cols=142 Identities=25% Similarity=0.263 Sum_probs=95.2
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-cCCcEEEEEeCCCCCCHHH---HHHHHHHHHhcCCeEEEeehhhhH
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLEAYAREID-KYKRTLLLVNKADLLPFSV---RKRWAKYFKDHDILFVFWSAKAAS 153 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-~~K~~iLVlNK~DL~p~~~---~~~W~~yf~~~gi~~if~Sa~~~~ 153 (509)
.+..+|++|+|+|+++|.+++ ..++.|+.++. .+.|+|||+||+||.+... .+.|++++... ..++.+||+
T Consensus 81 ~~~~ad~vilV~D~~~~~~s~-~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~-~~~~~~SAk--- 155 (301)
T 1u0l_A 81 HVANVDQVILVVTVKMPETST-YIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL-YPIVKTSAK--- 155 (301)
T ss_dssp TEESCCEEEEEECSSTTCCCH-HHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT-SCEEECCTT---
T ss_pred ccccCCEEEEEEeCCCCCCCH-HHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh-CcEEEEECC---
Confidence 578999999999999998544 35667776543 4789999999999998754 46788887655 677778885
Q ss_pred HhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccccccCccCCCCcEE
Q 010472 154 AALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVDESFAGNVAPKNVIV 233 (509)
Q Consensus 154 ~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~v 233 (509)
+|. +.+++...+ .|+++
T Consensus 156 ---tg~-----------------------gv~~lf~~l-------------------------------------~geiv 172 (301)
T 1u0l_A 156 ---TGM-----------------------GIEELKEYL-------------------------------------KGKIS 172 (301)
T ss_dssp ---TCT-----------------------THHHHHHHH-------------------------------------SSSEE
T ss_pred ---CCc-----------------------CHHHHHHHh-------------------------------------cCCeE
Confidence 333 233443321 37899
Q ss_pred EEEecCCCCHhHHHHHHhcCCc--ceEEee---CCcc--cccceeeecCeEEEEeCCCccC
Q 010472 234 GFVGYPNVGKSSTINALVGQKR--TGVTST---PGKT--KHFQTLIISEKLVLCDCPGLVF 287 (509)
Q Consensus 234 glvG~nGaGKSTLln~L~G~~~--~g~~~~---~G~t--~~~~~~~~~~~i~l~d~pg~~~ 287 (509)
+|+|+||||||||||+|+|+.. .|.+.+ .|.. .............++++||+..
T Consensus 173 ~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~ 233 (301)
T 1u0l_A 173 TMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFAN 233 (301)
T ss_dssp EEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTT
T ss_pred EEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCc
Confidence 9999999999999999999887 677776 5532 2222222333456678888643
No 57
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.68 E-value=3.4e-18 Score=185.83 Aligned_cols=173 Identities=14% Similarity=0.058 Sum_probs=115.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEE---------eeCCcccccc--e-eeecCeEEEEeCCCccCCCC-
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVT---------STPGKTKHFQ--T-LIISEKLVLCDCPGLVFPSF- 290 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~---------~~~G~t~~~~--~-~~~~~~i~l~d~pg~~~p~~- 290 (509)
.+.+|+++||+|+||||||||+++|+|+.. .|.+ .+.|...... . ......+.++.+....+|.+
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~ 122 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAV 122 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGC
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhh
Confidence 578999999999999999999999999876 4542 1334322110 0 00112344544432222221
Q ss_pred cccHHHHHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eC
Q 010472 291 SISRYDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----AS 366 (509)
Q Consensus 291 ~~~~~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----Pt 366 (509)
..++.+++... .....+..+.+. ++|.. +..+.+..|||||+|| ++||+||+.+|++| ||
T Consensus 123 ~~~v~e~~~~~--------~~~~~~~~~l~~---lgl~~-~~~~~~~~LSgGekQR----v~iAraL~~~P~lLlLDEPT 186 (538)
T 1yqt_A 123 KGKVIELLKKA--------DETGKLEEVVKA---LELEN-VLEREIQHLSGGELQR----VAIAAALLRNATFYFFDEPS 186 (538)
T ss_dssp CSBHHHHHHHH--------CSSSCHHHHHHH---TTCTT-TTTSBGGGCCHHHHHH----HHHHHHHHSCCSEEEEESTT
T ss_pred hccHHHHHhhh--------hHHHHHHHHHHH---cCCCh-hhhCChhhCCHHHHHH----HHHHHHHhcCCCEEEEECCc
Confidence 11333333210 000112333444 34554 5567788999999999 99999999999998 99
Q ss_pred CCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccc
Q 010472 367 SGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLE 414 (509)
Q Consensus 367 sGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~ 414 (509)
++||+..+ .+..+|+.+.+.+.+++...|++.....+++.+.+++++.
T Consensus 187 s~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~~ 235 (538)
T 1yqt_A 187 SYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEP 235 (538)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCcc
Confidence 99999999 9999999997756778888899888877777777777653
No 58
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.68 E-value=3.4e-18 Score=188.06 Aligned_cols=173 Identities=12% Similarity=0.043 Sum_probs=117.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEE---------eeCCcccccc--e-eeecCeEEEEeCCCccCCC-C
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVT---------STPGKTKHFQ--T-LIISEKLVLCDCPGLVFPS-F 290 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~---------~~~G~t~~~~--~-~~~~~~i~l~d~pg~~~p~-~ 290 (509)
.+.+|+++||+|+||||||||+++|+|+.. .|.+ .+.|...... . ......+.++.+....++. +
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 192 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAV 192 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTC
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhc
Confidence 578999999999999999999999999986 4553 2234322110 0 0011234444442222221 1
Q ss_pred cccHHHHHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eC
Q 010472 291 SISRYDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----AS 366 (509)
Q Consensus 291 ~~~~~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----Pt 366 (509)
..++.+++...- . ...+..+.+.+ +|.. +..+.+..|||||+|| ++||+||+.+|++| ||
T Consensus 193 ~~tv~e~l~~~~-----~---~~~~~~~L~~l---gL~~-~~~~~~~~LSGGekQR----vaIAraL~~~P~lLlLDEPT 256 (607)
T 3bk7_A 193 KGKVRELLKKVD-----E---VGKFEEVVKEL---ELEN-VLDRELHQLSGGELQR----VAIAAALLRKAHFYFFDEPS 256 (607)
T ss_dssp CSBHHHHHHHTC-----C---SSCHHHHHHHT---TCTT-GGGSBGGGCCHHHHHH----HHHHHHHHSCCSEEEEECTT
T ss_pred cccHHHHhhhhH-----H---HHHHHHHHHHc---CCCc-hhCCChhhCCHHHHHH----HHHHHHHhcCCCEEEEECCc
Confidence 124444443210 0 01123344444 4555 5567788999999999 99999999999998 99
Q ss_pred CCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccc
Q 010472 367 SGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLE 414 (509)
Q Consensus 367 sGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~ 414 (509)
+|||+..+ .+..+|+.+.+.+.+++...|++.....+++.+.+++++.
T Consensus 257 s~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 257 SYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEP 305 (607)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCCc
Confidence 99999999 9999999997656778888999988877777777777653
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.68 E-value=9.4e-18 Score=182.15 Aligned_cols=176 Identities=14% Similarity=0.063 Sum_probs=116.7
Q ss_pred ccCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEE-----------eeCCcccccc-eeeecCeEEEEeCCCcc--CC
Q 010472 225 NVAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVT-----------STPGKTKHFQ-TLIISEKLVLCDCPGLV--FP 288 (509)
Q Consensus 225 ~~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~-----------~~~G~t~~~~-~~~~~~~i~l~d~pg~~--~p 288 (509)
+...+|+++||||+||||||||+++|+|+.. .|.+ .+.|...... .........+....+.+ .+
T Consensus 20 ~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (538)
T 3ozx_A 20 PTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS 99 (538)
T ss_dssp CCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence 4567899999999999999999999999986 4554 2333322100 00001111122122221 11
Q ss_pred CC-cccHHHHHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce---
Q 010472 289 SF-SISRYDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV--- 364 (509)
Q Consensus 289 ~~-~~~~~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL--- 364 (509)
.+ ..++.+.+... .....+..+.+.++ +.. +..+.+..|||||+|| ++||+||+.+|.+|
T Consensus 100 ~~~~~~v~~~l~~~--------~~~~~~~~~l~~l~---l~~-~~~~~~~~LSgGe~Qr----v~iA~aL~~~p~illlD 163 (538)
T 3ozx_A 100 KFLKGTVNEILTKI--------DERGKKDEVKELLN---MTN-LWNKDANILSGGGLQR----LLVAASLLREADVYIFD 163 (538)
T ss_dssp TTCCSBHHHHHHHH--------CCSSCHHHHHHHTT---CGG-GTTSBGGGCCHHHHHH----HHHHHHHHSCCSEEEEE
T ss_pred hhccCcHHHHhhcc--------hhHHHHHHHHHHcC---Cch-hhcCChhhCCHHHHHH----HHHHHHHHcCCCEEEEE
Confidence 11 11222222110 00112233444444 544 4567788999999999 99999999999998
Q ss_pred -eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhccccccc
Q 010472 365 -ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHE 417 (509)
Q Consensus 365 -PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~ 417 (509)
||++||+..+ .+..+|+.+.+ +.+++...|++.....+++.+.+++++..+.
T Consensus 164 EPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~~~~~~~d~i~vl~~~~~~~ 217 (538)
T 3ozx_A 164 QPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLIVLDYLTDLIHIIYGESSVY 217 (538)
T ss_dssp STTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHHHHHHHCSEEEEEEEETTTE
T ss_pred CCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChHHHHhhCCEEEEecCCcccc
Confidence 9999999999 99999999977 4677888999999888888888888776543
No 60
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.67 E-value=4.4e-17 Score=193.15 Aligned_cols=182 Identities=14% Similarity=0.147 Sum_probs=134.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++++|+++||||+||||||||+++|+|... .|.+.++|..... ....++..+++++|...+|+. +..+++..|.
T Consensus 412 ~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~---ti~eNi~~g~ 488 (1284)
T 3g5u_A 412 KVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT---TIAENIRYGR 488 (1284)
T ss_dssp EECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS---CHHHHHHHHC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc---cHHHHHhcCC
Confidence 578999999999999999999999999987 7999999976432 222345679999998887653 7888988775
Q ss_pred CCcchhhhHHHHHHHHHHhCCcc--------chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRH--------VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~--------~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
..... +.+..+++..... ++.. ........|||||+|| ++|||||+.+|++| ||++||
T Consensus 489 ~~~~~-----~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgGq~Qr----iaiARal~~~p~iliLDEpts~LD 558 (1284)
T 3g5u_A 489 EDVTM-----DEIEKAVKEANAYDFIMKLPHQFDT-LVGERGAQLSGGQKQR----IAIARALVRNPKILLLDEATSALD 558 (1284)
T ss_dssp SSCCH-----HHHHHHHHHTTCHHHHHHSTTGGGC-CCSSSSCSSCHHHHHH----HHHHHHHHHCCSEEEEESTTCSSC
T ss_pred CCCCH-----HHHHHHHHHhCcHHHHHhccccccc-cccCCCCccCHHHHHH----HHHHHHHhcCCCEEEEECCCCCCC
Confidence 32211 1122222222111 1111 1122345799999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
+.+. .+...|+.+.+|+ +++..+|.++.... ++.+.+++.|++++.++.+
T Consensus 559 ~~~~~~i~~~l~~~~~~~-t~i~itH~l~~i~~-~d~i~vl~~G~i~~~g~~~ 609 (1284)
T 3g5u_A 559 TESEAVVQAALDKAREGR-TTIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNHD 609 (1284)
T ss_dssp HHHHHHHHHHHHHHHTTS-EEEEECSCHHHHTT-CSEEEECSSSCCCCEECHH
T ss_pred HHHHHHHHHHHHHHcCCC-EEEEEecCHHHHHc-CCEEEEEECCEEEEECCHH
Confidence 9998 8888998887765 45567888888776 5677778888988766543
No 61
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.66 E-value=2.4e-17 Score=195.87 Aligned_cols=187 Identities=15% Similarity=0.108 Sum_probs=138.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
++++|+.+||||++|||||||+++|.|++. .|.+.++|..... ....++..+++++|...+|. .+..+|+..|.
T Consensus 1101 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~---gTIreNI~~gl 1177 (1321)
T 4f4c_A 1101 SVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD---CSIAENIIYGL 1177 (1321)
T ss_dssp EECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS---EEHHHHHSSSS
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeC---ccHHHHHhccC
Confidence 578999999999999999999999999987 7999999987533 33456788999999998864 58899998886
Q ss_pred CCcchhhhHHHHHHHHHHhCCcc--------chhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRH--------VIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLP 370 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~--------~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD 370 (509)
-|.. .. .+.+..+++..... ++.. ........|||||+|| ++|||||+++|++| ||++||
T Consensus 1178 d~~~-~s--d~ei~~Al~~a~l~~~I~~Lp~GldT-~vge~G~~LSgGQrQr----iaiARAllr~~~ILiLDEaTSaLD 1249 (1321)
T 4f4c_A 1178 DPSS-VT--MAQVEEAARLANIHNFIAELPEGFET-RVGDRGTQLSGGQKQR----IAIARALVRNPKILLLDEATSALD 1249 (1321)
T ss_dssp CTTT-SC--HHHHHHHHHHTTCHHHHHTSTTTTCS-EETTTSCSSCHHHHHH----HHHHHHHHSCCSEEEEESCCCSTT
T ss_pred CCCC-CC--HHHHHHHHHHhCChHHHHcCcCCCCC-EecCCCcccCHHHHHH----HHHHHHHHhCCCEEEEeCccccCC
Confidence 5422 11 12233333333321 1111 0011234699999999 99999999999998 999999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC-cccc
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS-DAEE 425 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 425 (509)
..+. .+.+.|+...+|+++ ++..|-++.-..| |.+.+++.|+++|.++. ++.+
T Consensus 1250 ~~tE~~Iq~~l~~~~~~~Tv-I~IAHRLsTi~~a-D~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1250 TESEKVVQEALDRAREGRTC-IVIAHRLNTVMNA-DCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp SHHHHHHHHHHTTTSSSSEE-EEECSSSSTTTTC-SEEEEESSSSEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEE-EEeccCHHHHHhC-CEEEEEECCEEEEECCHHHHHh
Confidence 9988 888888888777754 4456877776655 56667788888886554 4443
No 62
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.2e-17 Score=181.48 Aligned_cols=177 Identities=14% Similarity=0.077 Sum_probs=114.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEe-----------eCCccccc-ceeeecCeEEEEeCCCccCC---
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTS-----------TPGKTKHF-QTLIISEKLVLCDCPGLVFP--- 288 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~-----------~~G~t~~~-~~~~~~~~i~l~d~pg~~~p--- 288 (509)
.+.+|+++||+|||||||||||++|+|+.. .|.+. +.|..... ........+..+..+..+..
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPR 178 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHH
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhh
Confidence 567899999999999999999999999987 45442 11211100 00000111111111111100
Q ss_pred ---CCcccHHHHHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce-
Q 010472 289 ---SFSISRYDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV- 364 (509)
Q Consensus 289 ---~~~~~~~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL- 364 (509)
....+..+.+... ....... +.+.+..++|.. +..+.+..|||||+|| ++||+||+.+|.+|
T Consensus 179 ~~~~~~~~v~~~l~~~------~~~~~~~---~~~~l~~~gl~~-~~~~~~~~LSgGe~Qr----v~iAraL~~~p~lll 244 (608)
T 3j16_B 179 AIKGPVQKVGELLKLR------MEKSPED---VKRYIKILQLEN-VLKRDIEKLSGGELQR----FAIGMSCVQEADVYM 244 (608)
T ss_dssp HCSSSSSHHHHHHHHH------CCSCHHH---HHHHHHHHTCTG-GGGSCTTTCCHHHHHH----HHHHHHHHSCCSEEE
T ss_pred hhcchhhHHHHHHhhh------hhhHHHH---HHHHHHHcCCcc-hhCCChHHCCHHHHHH----HHHHHHHHhCCCEEE
Confidence 0000111111000 0001122 333334445665 6678899999999999 99999999999998
Q ss_pred ---eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccc
Q 010472 365 ---ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELH 416 (509)
Q Consensus 365 ---PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~ 416 (509)
||+|||+..+ .+..+|+.+.+.+..++...|++....+.++.+.+++++..+
T Consensus 245 lDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~~ 300 (608)
T 3j16_B 245 FDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSV 300 (608)
T ss_dssp EECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTTT
T ss_pred EECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCccc
Confidence 9999999999 999999999775567888899999999888888888876543
No 63
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.65 E-value=1e-16 Score=190.53 Aligned_cols=182 Identities=14% Similarity=0.108 Sum_probs=135.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccc-ceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHF-QTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~-~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
.+++|+.++|||++|||||||+++|+|.+. .|.+.++|..... ....++..++|+.|...+| ..+..+|+..|.
T Consensus 440 ~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf---~~TI~eNI~~g~ 516 (1321)
T 4f4c_A 440 RVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALF---NCTIEENISLGK 516 (1321)
T ss_dssp EECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCC---SEEHHHHHHTTC
T ss_pred eecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceee---CCchhHHHhhhc
Confidence 578999999999999999999999999987 8999999977432 3334567899999999885 458899999885
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchhh----Hh---hccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCH
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIEN----VC---KINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPD 371 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~~----~~---~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~ 371 (509)
-... .+.+..+++.......-. -| .-.....|||||+|| ++||||+..+|+++ ||++||.
T Consensus 517 ~~~~-----~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQR----iaiARAl~~~~~IliLDE~tSaLD~ 587 (1321)
T 4f4c_A 517 EGIT-----REEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQR----IAIARALVRNPKILLLDEATSALDA 587 (1321)
T ss_dssp TTCC-----HHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHH----HHHHHHHTTCCSEEEEESTTTTSCT
T ss_pred ccch-----HHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHH----HHHHHHHccCCCEEEEecccccCCH
Confidence 3211 123333444333211100 01 112234799999999 99999999999998 9999999
Q ss_pred HHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 372 ETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 372 ~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
.+. .+.+.|..+.+|+++++ .+|.++.-..|| .+.+++.|++++.++-
T Consensus 588 ~te~~i~~~l~~~~~~~T~ii-iaHrls~i~~aD-~Iivl~~G~ive~Gth 636 (1321)
T 4f4c_A 588 ESEGIVQQALDKAAKGRTTII-IAHRLSTIRNAD-LIISCKNGQVVEVGDH 636 (1321)
T ss_dssp TTHHHHHHHHHHHHTTSEEEE-ECSCTTTTTTCS-EEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHHHhCCCEEEE-EcccHHHHHhCC-EEEEeeCCeeeccCCH
Confidence 988 88999999988887665 458877776655 5556688888775553
No 64
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.61 E-value=1.7e-16 Score=176.90 Aligned_cols=89 Identities=7% Similarity=-0.013 Sum_probs=73.8
Q ss_pred hccCCCCCCccccCCCchHHHHHHHHHHcCC---ce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhcc
Q 010472 332 KINLPKPKPYESQSRPPLALELLRAYCASRG---YV----ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVG 403 (509)
Q Consensus 332 ~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~---lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~ 403 (509)
..+.+..|||||+|| ++||+||+.+|. +| ||+|||+..+ .+..+|+++++.+.+++..+|++...++
T Consensus 537 ~~~~~~~LSgG~~qr----v~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~- 611 (670)
T 3ux8_A 537 LGQPATTLSGGEAQR----VKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKT- 611 (670)
T ss_dssp TTCCGGGCCHHHHHH----HHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-
T ss_pred ccCCchhCCHHHHHH----HHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHh-
Confidence 356778999999999 999999999875 66 9999999999 9999999998766778888999988877
Q ss_pred chhhHhh------cccccccCCCCcccc
Q 010472 404 MEDTQAS------SLLELHESDASDAEE 425 (509)
Q Consensus 404 ~~~~~~~------~~~~~~~~~~~~~~~ 425 (509)
++.++++ ++|++++.++.+...
T Consensus 612 ~d~i~~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 612 ADYIIDLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp CSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred CCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence 5566666 788888776665443
No 65
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.60 E-value=6.9e-17 Score=180.02 Aligned_cols=95 Identities=9% Similarity=-0.065 Sum_probs=74.7
Q ss_pred ccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCC--ce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCC
Q 010472 324 RHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRG--YV----ASSGLPDETR-AARIILKDFIDGKLPHFEMPPG 396 (509)
Q Consensus 324 ~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~--lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~ 396 (509)
.++|.+.+..+.+..|||||+|| ++||+||+.+|. +| ||+|||+..+ .+..+|+++++.+.+++..+|+
T Consensus 188 ~~gL~~~~~~~~~~~LSGGe~QR----v~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 188 NVGLDYLTLSRSAGTLSGGEAQR----IRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp HTTCTTCCTTCBGGGSCHHHHHH----HHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HcCCchhhhcCCcccCCHHHHHH----HHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 34444322456788999999999 999999999998 76 9999999999 9999999997766778888999
Q ss_pred CChhhccchhhHhh------cccccccCCCCcc
Q 010472 397 MSHEEVGMEDTQAS------SLLELHESDASDA 423 (509)
Q Consensus 397 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 423 (509)
+....+|++ +.++ ++|++++.++.+.
T Consensus 264 ~~~~~~~d~-ii~l~~g~~~~~G~i~~~g~~~~ 295 (670)
T 3ux8_A 264 EDTMLAADY-LIDIGPGAGIHGGEVVAAGTPEE 295 (670)
T ss_dssp HHHHHHCSE-EEEECSSSGGGCCSEEEEECHHH
T ss_pred HHHHhhCCE-EEEecccccccCCEEEEecCHHH
Confidence 988877555 4444 7778776555443
No 66
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.59 E-value=5.8e-16 Score=176.83 Aligned_cols=162 Identities=14% Similarity=0.058 Sum_probs=115.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeecCeEEEEeCC-CccCCCCcccHHHHHHhccCC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLVLCDCP-GLVFPSFSISRYDMVASGVLP 304 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~~~i~l~d~p-g~~~p~~~~~~~e~v~~g~~~ 304 (509)
++.+|+++||+|+||||||||+++|+| |.+ .|..... ...+.|+++. ...++.+ ++.+++......
T Consensus 457 ~I~~Ge~v~LiGpNGsGKSTLLk~Lag----G~i--~g~~~~~-----~~~~~~v~q~~~~~~~~l--tv~e~l~~~~~~ 523 (986)
T 2iw3_A 457 RLKRARRYGICGPNGCGKSTLMRAIAN----GQV--DGFPTQE-----ECRTVYVEHDIDGTHSDT--SVLDFVFESGVG 523 (986)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHH----TCS--TTCCCTT-----TSCEEETTCCCCCCCTTS--BHHHHHHTTCSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC----CCc--CCCcccc-----ceeEEEEcccccccccCC--cHHHHHHHhhcC
Confidence 578999999999999999999999995 211 2322110 1124566553 2345555 566666541111
Q ss_pred cchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHHH
Q 010472 305 IDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARII 379 (509)
Q Consensus 305 ~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~l 379 (509)
. ... +.+.+..++|...+..+.+..|||||+|| ++||+||+.+|.+| ||+|||+.++ .+..+
T Consensus 524 ---~---~~~---v~~~L~~lgL~~~~~~~~~~~LSGGqkQR----vaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~ 590 (986)
T 2iw3_A 524 ---T---KEA---IKDKLIEFGFTDEMIAMPISALSGGWKMK----LALARAVLRNADILLLDEPTNHLDTVNVAWLVNY 590 (986)
T ss_dssp ---C---HHH---HHHHHHHTTCCHHHHHSBGGGCCHHHHHH----HHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred ---H---HHH---HHHHHHHcCCChhhhcCCcccCCHHHHHH----HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHH
Confidence 1 222 33334444563225567788999999999 99999999999998 9999999999 99999
Q ss_pred HHHhhcCCccEEEcCCCCChhhccchhhHhhcccccc
Q 010472 380 LKDFIDGKLPHFEMPPGMSHEEVGMEDTQASSLLELH 416 (509)
Q Consensus 380 Lkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~ 416 (509)
|+. . +.+++...|++.....+++.+.+++.|+++
T Consensus 591 L~~--~-g~tvIivSHdl~~l~~~adrii~L~~G~iv 624 (986)
T 2iw3_A 591 LNT--C-GITSITISHDSVFLDNVCEYIINYEGLKLR 624 (986)
T ss_dssp HHH--S-CSEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred HHh--C-CCEEEEEECCHHHHHHhCCEEEEEECCeee
Confidence 988 3 456777889998887777778888888875
No 67
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.59 E-value=8.4e-15 Score=155.27 Aligned_cols=165 Identities=26% Similarity=0.339 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCC-eEEEee
Q 010472 70 DMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDI-LFVFWS 148 (509)
Q Consensus 70 e~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~gi-~~if~S 148 (509)
.+.+|....++.+|+||+|+|+++++......+..++.. .++|+|||+||+|+........|.+++ +.|+ .++.+|
T Consensus 70 ~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~--~~~p~ilv~NK~D~~~~~~~~~~~~~~-~lg~~~~~~iS 146 (439)
T 1mky_A 70 KMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRK--STVDTILVANKAENLREFEREVKPELY-SLGFGEPIPVS 146 (439)
T ss_dssp HHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHH--HTCCEEEEEESCCSHHHHHHHTHHHHG-GGSSCSCEECB
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEeCCCCccccHHHHHHHHH-hcCCCCEEEEe
Confidence 467788889999999999999999876443334444443 379999999999996431222334443 5666 466678
Q ss_pred hhhhHHhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccccccCccCC
Q 010472 149 AKAASAALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVDESFAGNVAP 228 (509)
Q Consensus 149 a~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~ 228 (509)
|. +|. |.++|++.+.....+ ......+ .....
T Consensus 147 A~------~g~-----------------------gv~~L~~~i~~~l~~-----~~~~~~~--------------~~~~~ 178 (439)
T 1mky_A 147 AE------HNI-----------------------NLDTMLETIIKKLEE-----KGLDLES--------------KPEIT 178 (439)
T ss_dssp TT------TTB-----------------------SHHHHHHHHHHHHHH-----TTCCSSS--------------CCCCC
T ss_pred cc------CCC-----------------------CHHHHHHHHHHhccc-----ccccchh--------------ccccc
Confidence 75 443 345677666543321 0000000 00012
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCccccccee--ee-cCeEEEEeCCCc
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTL--II-SEKLVLCDCPGL 285 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~--~~-~~~i~l~d~pg~ 285 (509)
....++|||+||||||||+|.|+|....-+..++|+|++.... .+ ...+.++|++|+
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~ 238 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGL 238 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCC
Confidence 3468999999999999999999998776677788888654322 22 235778899997
No 68
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.57 E-value=4.9e-16 Score=177.41 Aligned_cols=95 Identities=11% Similarity=-0.002 Sum_probs=73.5
Q ss_pred HHHhCCccchhhHh-hccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHHHHHHhhcCCccEE
Q 010472 318 VANRVPRHVIENVC-KINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARIILKDFIDGKLPHF 391 (509)
Q Consensus 318 i~~~l~~~~L~~~~-~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~ 391 (509)
+.+.+..++|...+ ....+..|||||+|| +.||+||+.+|.+| ||+|||+.++ .+..+|+++ | .+++
T Consensus 880 i~~~Le~lGL~~~~~~~~~~~~LSGGQkQR----VaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g-~tVI 952 (986)
T 2iw3_A 880 IEEHCSMLGLDPEIVSHSRIRGLSGGQKVK----LVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--E-GGVI 952 (986)
T ss_dssp HHHHHHHTTCCHHHHHHSCGGGCCHHHHHH----HHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--S-SEEE
T ss_pred HHHHHHHcCCCchhhcCCCccccCHHHHHH----HHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--C-CEEE
Confidence 33444445564323 456788999999999 99999999999998 9999999998 888888876 3 3677
Q ss_pred EcCCCCChhhccchhhHhhcccccccCC
Q 010472 392 EMPPGMSHEEVGMEDTQASSLLELHESD 419 (509)
Q Consensus 392 ~~pp~~~~~~~~~~~~~~~~~~~~~~~~ 419 (509)
..+|++.....+++.+.++..|+++..+
T Consensus 953 iISHD~e~v~~l~DrVivL~~G~Iv~~G 980 (986)
T 2iw3_A 953 IITHSAEFTKNLTEEVWAVKDGRMTPSG 980 (986)
T ss_dssp EECSCHHHHTTTCCEEECCBTTBCCC--
T ss_pred EEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 8889988887777777788888887644
No 69
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.44 E-value=6.5e-14 Score=148.31 Aligned_cols=160 Identities=21% Similarity=0.298 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCC-eEEEee
Q 010472 70 DMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDI-LFVFWS 148 (509)
Q Consensus 70 e~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~gi-~~if~S 148 (509)
++.+|....++.+|+||+|+|+++++......+..++. ..++|+|||+||+|+.+... ...+++ +.|+ .++.+|
T Consensus 71 ~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~--~~~~pvilv~NK~D~~~~~~--~~~~~~-~lg~~~~~~iS 145 (436)
T 2hjg_A 71 QIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILY--RTKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFGEPYPIS 145 (436)
T ss_dssp HHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHT--TCCSCEEEEEECCCC-------CCCSSG-GGSSCCCEECB
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH--HcCCCEEEEEECccCccchh--hHHHHH-HcCCCCeEEEe
Confidence 46777778999999999999999988633222222222 24789999999999986531 122333 4555 456677
Q ss_pred hhhhHHhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccccccCccCC
Q 010472 149 AKAASAALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVDESFAGNVAP 228 (509)
Q Consensus 149 a~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~ 228 (509)
|. +|. |.++|++.+.....+ . .. ...-.
T Consensus 146 A~------~g~-----------------------gv~~L~~~i~~~l~~-------~--~~--------------~~~~~ 173 (436)
T 2hjg_A 146 GT------HGL-----------------------GLGDLLDAVAEHFKN-------I--PE--------------TKYNE 173 (436)
T ss_dssp TT------TTB-----------------------THHHHHHHHHHTGGG-------C--CS--------------SCCCT
T ss_pred Cc------CCC-----------------------ChHHHHHHHHHhcCc-------c--cc--------------ccccc
Confidence 74 343 345677665432210 0 00 00012
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCccccccee--ee-cCeEEEEeCCCcc
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTL--II-SEKLVLCDCPGLV 286 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~--~~-~~~i~l~d~pg~~ 286 (509)
....++|+|.+|||||||+|.|+|....-+..++|+|.+.... .. ...+.++||||..
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~ 234 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMR 234 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHT
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcC
Confidence 2358999999999999999999998765566778888765322 22 2358899999974
No 70
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.43 E-value=7e-15 Score=166.27 Aligned_cols=102 Identities=9% Similarity=-0.037 Sum_probs=77.6
Q ss_pred HHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHc---CCce----eCCCCCHHHH-HHHHHHHHhhcCCcc
Q 010472 318 VANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCAS---RGYV----ASSGLPDETR-AARIILKDFIDGKLP 389 (509)
Q Consensus 318 i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~---p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~ 389 (509)
+.+.+..++|......+.+..|||||+|| +.||++|+.+ |.++ ||+|||...+ .+..+|+.+.+.+.+
T Consensus 710 ~~~~L~~~gL~~~~l~~~~~~LSGGekQR----v~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~t 785 (842)
T 2vf7_A 710 ALDTLREVGLGYLRLGQPATELSGGEAQR----IKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNT 785 (842)
T ss_dssp HHHHHHHTTCTTSBTTCCGGGCCHHHHHH----HHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHcCCCcccccCCcccCCHHHHHH----HHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 34444445554422356678899999999 9999999997 5776 9999999999 999999999876677
Q ss_pred EEEcCCCCChhhccchhhHhh------cccccccCCCCccc
Q 010472 390 HFEMPPGMSHEEVGMEDTQAS------SLLELHESDASDAE 424 (509)
Q Consensus 390 ~~~~pp~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 424 (509)
++...|++..... ++.+.++ .+|+++..++.+..
T Consensus 786 VIvisHdl~~i~~-aDrii~L~p~~g~~~G~Iv~~g~~~el 825 (842)
T 2vf7_A 786 VIAVEHKMQVVAA-SDWVLDIGPGAGEDGGRLVAQGTPAEV 825 (842)
T ss_dssp EEEECCCHHHHTT-CSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred EEEEcCCHHHHHh-CCEEEEECCCCCCCCCEEEEEcCHHHH
Confidence 8888899988854 5666666 67788765544433
No 71
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.43 E-value=1.7e-15 Score=161.36 Aligned_cols=172 Identities=12% Similarity=-0.043 Sum_probs=106.0
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCCc--ce-E-EeeCCcccccceeeecCeEEEEeCCCccCCCCc-ccHHHHHHhc
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQKR--TG-V-TSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFS-ISRYDMVASG 301 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g-~-~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~-~~~~e~v~~g 301 (509)
+..|++++|+|+||||||||+++|+|+.. .| . +.+.|.. +..++++++....|+.+. .+..+++ .+
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~--------~~~i~~vpq~~~l~~~~~~~tv~eni-~~ 205 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDP--------QQPIFTVPGCISATPISDILDAQLPT-WG 205 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCT--------TSCSSSCSSCCEEEECCSCCCTTCTT-CS
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCc--------cCCeeeeccchhhcccccccchhhhh-cc
Confidence 56899999999999999999999999986 67 6 7777621 233444444332222111 1222233 22
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHH--HHHcCCc----e-----eCCCCC
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRA--YCASRGY----V-----ASSGLP 370 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~A--La~~p~l----L-----PtsGLD 370 (509)
......... ...+...+..+++.. +.. +..||+||+|| ++||+| |+.+|.+ | |+++||
T Consensus 206 ~~~~~~~~~----~~~~~~ll~~~gl~~-~~~--~~~LSgGq~qr----lalAra~rL~~~p~i~~sGLlLDEpPts~LD 274 (460)
T 2npi_A 206 QSLTSGATL----LHNKQPMVKNFGLER-INE--NKDLYLECISQ----LGQVVGQRLHLDPQVRRSGCIVDTPSISQLD 274 (460)
T ss_dssp CBCBSSCCS----SCCBCCEECCCCSSS-GGG--CHHHHHHHHHH----HHHHHHHHHHHCHHHHHSCEEEECCCGGGSC
T ss_pred cccccCcch----HHHHHHHHHHhCCCc-ccc--hhhhhHHHHHH----HHHHHHHHhccCcccCcceEEEeCCcccccC
Confidence 211000000 011233455566655 332 67899999999 999999 9999998 6 899999
Q ss_pred HHHH-HHHHHHHHhhcCCccEEEcCCC--CC--hhhccchh-----hHhhc-ccccccCCC
Q 010472 371 DETR-AARIILKDFIDGKLPHFEMPPG--MS--HEEVGMED-----TQASS-LLELHESDA 420 (509)
Q Consensus 371 ~~~r-~~~~lLkd~~~gkl~~~~~pp~--~~--~~~~~~~~-----~~~~~-~~~~~~~~~ 420 (509)
+. + .+..+++.+.. .++++++.+. +. .+...++. ++++. .|+++.+++
T Consensus 275 ~~-~~~l~~l~~~~~~-tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv~g~~ 333 (460)
T 2npi_A 275 EN-LAELHHIIEKLNV-NIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVSAVDD 333 (460)
T ss_dssp SS-CHHHHHHHHHTTC-CEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCCCCCH
T ss_pred hh-HHHHHHHHHHhCC-CEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEEECCH
Confidence 98 5 77777776521 2334444433 22 44444455 77777 788884333
No 72
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.42 E-value=5.6e-14 Score=160.17 Aligned_cols=104 Identities=8% Similarity=-0.052 Sum_probs=80.3
Q ss_pred HHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcC---Cce----eCCCCCHHHH-HHHHHHHHhhcCCcc
Q 010472 318 VANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASR---GYV----ASSGLPDETR-AARIILKDFIDGKLP 389 (509)
Q Consensus 318 i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p---~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~ 389 (509)
+.+.+..++|........+..|||||+|| +.||+||+.+| .+| ||+|||+..+ .+..+|+.+++.+.+
T Consensus 785 ~~~~L~~vGL~~~~lgq~~~~LSGGErQR----V~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~T 860 (916)
T 3pih_A 785 TLQVLHDVGLGYVKLGQPATTLSGGEAQR----IKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNT 860 (916)
T ss_dssp HHHHHHHTTGGGSBTTCCSTTCCHHHHHH----HHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHcCCchhhccCCccCCCHHHHHH----HHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCE
Confidence 34444455565422346678999999999 99999999876 466 9999999999 999999999775566
Q ss_pred EEEcCCCCChhhccchhhHhh------cccccccCCCCccccC
Q 010472 390 HFEMPPGMSHEEVGMEDTQAS------SLLELHESDASDAEEV 426 (509)
Q Consensus 390 ~~~~pp~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 426 (509)
++...|+++.... ++.+.++ .+|++++.++.+....
T Consensus 861 VIvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 861 VIVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp EEEECCCHHHHTT-CSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred EEEEeCCHHHHHh-CCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 7788999988876 5666666 8888888776655544
No 73
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.36 E-value=9.8e-13 Score=140.01 Aligned_cols=160 Identities=21% Similarity=0.290 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCC-eEEEee
Q 010472 70 DMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDI-LFVFWS 148 (509)
Q Consensus 70 e~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~gi-~~if~S 148 (509)
++.++....++.+|+||+|+|+++++......+..++. ..++|+|||+||+|+.... ..+.+++ +.|. ..+.+|
T Consensus 91 ~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~--~~~~pvilV~NK~D~~~~~--~~~~e~~-~lg~~~~~~iS 165 (456)
T 4dcu_A 91 QIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILY--RTKKPVVLAVNKLDNTEMR--ANIYDFY-SLGFGEPYPIS 165 (456)
T ss_dssp HHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHT--TCCSCEEEEEECC-----------CCSG-GGSSSSEEECC
T ss_pred HHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHH--HcCCCEEEEEECccchhhh--hhHHHHH-HcCCCceEEee
Confidence 56677778899999999999999987533333333332 2479999999999998542 2333443 3443 234567
Q ss_pred hhhhHHhhhcccccccccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccccccCccCC
Q 010472 149 AKAASAALEGKAVSDTWRTQDTQQNIDDPETKVYSREELLARLQYEAEEIVKMRRQAGCSSTGKSNVQSVDESFAGNVAP 228 (509)
Q Consensus 149 a~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~ 228 (509)
|. +|. |.++|++.+...... .. ......
T Consensus 166 A~------~g~-----------------------gv~~L~~~i~~~l~~-------~~----------------~~~~~~ 193 (456)
T 4dcu_A 166 GT------HGL-----------------------GLGDLLDAVAEHFKN-------IP----------------ETKYNE 193 (456)
T ss_dssp TT------TCT-----------------------THHHHHHHHHTTGGG-------SC----------------SSCCCT
T ss_pred cc------ccc-----------------------chHHHHHHHHhhccc-------cc----------------cccccc
Confidence 64 333 345666655422100 00 000113
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceee--e-cCeEEEEeCCCcc
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLI--I-SEKLVLCDCPGLV 286 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~--~-~~~i~l~d~pg~~ 286 (509)
....++|+|.+|+|||||+|.|+|....-+...+|+|.+..... . ...+.++||||+.
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~ 254 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMR 254 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTT
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCC
Confidence 45689999999999999999999976666667788887653322 2 2368899999975
No 74
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.35 E-value=2.5e-13 Score=142.16 Aligned_cols=73 Identities=11% Similarity=-0.057 Sum_probs=57.9
Q ss_pred CCccccCCCchHHHHHHHHHHcC--Cce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhHhh-
Q 010472 339 KPYESQSRPPLALELLRAYCASR--GYV----ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQAS- 410 (509)
Q Consensus 339 LSgGq~QR~~~~~~La~ALa~~p--~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~~- 410 (509)
+||||+|| +.||++|+.+| .+| |++|||+..+ .+..+|+.+.+| ..++..+|.+.....|+ .+.++
T Consensus 296 lSgGe~qr----l~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~-~~vi~itH~~~~~~~~d-~i~~l~ 369 (415)
T 4aby_A 296 ASGGELSR----VMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADT-RQVLVVTHLAQIAARAH-HHYKVE 369 (415)
T ss_dssp SCHHHHHH----HHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTT-SEEEEECSCHHHHTTCS-EEEEEE
T ss_pred cCHhHHHH----HHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCC-CEEEEEeCcHHHHhhcC-eEEEEE
Confidence 79999999 99999999999 987 9999999999 999999999854 44555667766666654 55555
Q ss_pred ---ccccccc
Q 010472 411 ---SLLELHE 417 (509)
Q Consensus 411 ---~~~~~~~ 417 (509)
+.|+++.
T Consensus 370 k~~~~G~~~~ 379 (415)
T 4aby_A 370 KQVEDGRTVS 379 (415)
T ss_dssp EEEETTEEEE
T ss_pred EeccCCceEE
Confidence 5555543
No 75
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.35 E-value=4.8e-14 Score=160.14 Aligned_cols=100 Identities=6% Similarity=-0.039 Sum_probs=75.6
Q ss_pred HhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcC---Cce----eCCCCCHHHH-HHHHHHHHhhcCCccEE
Q 010472 320 NRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASR---GYV----ASSGLPDETR-AARIILKDFIDGKLPHF 391 (509)
Q Consensus 320 ~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p---~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~ 391 (509)
+.+..++|........+..|||||+|| +.||++|+.+| .++ ||+|||+..+ .++.+|+.+.+.+.+++
T Consensus 827 ~~L~~~gL~~~~l~~~~~~LSGGekQR----v~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVI 902 (972)
T 2r6f_A 827 ETLYDVGLGYMKLGQPATTLSGGEAQR----VKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVL 902 (972)
T ss_dssp HHHHHTTCSSSBTTCCGGGCCHHHHHH----HHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHcCCCcccccCchhhCCHHHHHH----HHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 334444454323456678899999999 99999999875 676 9999999999 99999999987666778
Q ss_pred EcCCCCChhhccchhhHhh------cccccccCCCCccc
Q 010472 392 EMPPGMSHEEVGMEDTQAS------SLLELHESDASDAE 424 (509)
Q Consensus 392 ~~pp~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 424 (509)
...|++...+. ++.+.++ .+|+++..++.+..
T Consensus 903 visHdl~~i~~-aDrIivL~p~gG~~~G~Iv~~g~~~el 940 (972)
T 2r6f_A 903 VIEHNLDVIKT-ADYIIDLGPEGGDRGGQIVAVGTPEEV 940 (972)
T ss_dssp EECCCHHHHTT-CSEEEEECSSSTTSCCSEEEEESHHHH
T ss_pred EEcCCHHHHHh-CCEEEEEcCCCCCCCCEEEEecCHHHH
Confidence 88899888765 5566666 67788765554433
No 76
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.33 E-value=9.9e-14 Score=158.04 Aligned_cols=99 Identities=6% Similarity=-0.053 Sum_probs=75.5
Q ss_pred HhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcC---Cce----eCCCCCHHHH-HHHHHHHHhhcCCccEE
Q 010472 320 NRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASR---GYV----ASSGLPDETR-AARIILKDFIDGKLPHF 391 (509)
Q Consensus 320 ~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p---~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~ 391 (509)
+.+..++|........+..|||||+|| +.||++|+.+| .++ ||+|||+..+ .+..+|+.+.+.+.+++
T Consensus 845 ~~L~~lgL~~~~l~~~~~~LSGGekQR----v~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVI 920 (993)
T 2ygr_A 845 RTLVDVGLGYVRLGQPAPTLSGGEAQR----VKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVI 920 (993)
T ss_dssp HHHHHTTGGGSBTTCCGGGSCHHHHHH----HHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHcCCCcccccCccccCCHHHHHH----HHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 444445564423456678899999999 99999999875 776 9999999999 99999999977666777
Q ss_pred EcCCCCChhhccchhhHhh------cccccccCCCCcc
Q 010472 392 EMPPGMSHEEVGMEDTQAS------SLLELHESDASDA 423 (509)
Q Consensus 392 ~~pp~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 423 (509)
...|++...+. ++.+.++ .+|+++..++.+.
T Consensus 921 visHdl~~i~~-aDrIivL~p~gg~~~G~Iv~~G~~~e 957 (993)
T 2ygr_A 921 VIEHNLDVIKT-SDWIIDLGPEGGAGGGTVVAQGTPED 957 (993)
T ss_dssp EECCCHHHHTT-CSEEEEEESSSTTSCSEEEEEECHHH
T ss_pred EEcCCHHHHHh-CCEEEEECCCcCCCCCEEEEecCHHH
Confidence 88899888765 5566666 5777776554443
No 77
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.30 E-value=3.9e-13 Score=141.07 Aligned_cols=153 Identities=12% Similarity=0.042 Sum_probs=92.4
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccccccee----eecCeEEEEeCCCccCCCCcccHHHHHHhcc
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTL----IISEKLVLCDCPGLVFPSFSISRYDMVASGV 302 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~----~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~ 302 (509)
.+.++||+|+||||||||||+|+|+.. .|.+.+.|........ .....+.+.|.+|+..+
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~-------------- 133 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGST-------------- 133 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGS--------------
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccch--------------
Confidence 345999999999999999999999876 6777776643210000 00012233333332110
Q ss_pred CCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCcc--ccCCCchHHHHHHHHHH----------cCCce----eC
Q 010472 303 LPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYE--SQSRPPLALELLRAYCA----------SRGYV----AS 366 (509)
Q Consensus 303 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgG--q~QR~~~~~~La~ALa~----------~p~lL----Pt 366 (509)
. ..+..+.+.+ ++.. +... +. +|+| ++|| +.||+||+. +|+++ ||
T Consensus 134 --~-------~~~~~~L~~~---~L~~-~~~~-~~-lS~G~~~kqr----v~la~aL~~~~~p~~lV~tkpdlllLDEPt 194 (413)
T 1tq4_A 134 --N-------FPPDTYLEKM---KFYE-YDFF-II-ISATRFKKND----IDIAKAISMMKKEFYFVRTKVDSDITNEAD 194 (413)
T ss_dssp --S-------CCHHHHHHHT---TGGG-CSEE-EE-EESSCCCHHH----HHHHHHHHHTTCEEEEEECCHHHHHHHHHT
T ss_pred --H-------HHHHHHHHHc---CCCc-cCCe-EE-eCCCCccHHH----HHHHHHHHhcCCCeEEEEecCcccccCccc
Confidence 0 0112222332 3443 2222 22 8998 9999 999999999 88876 99
Q ss_pred CCCCHHHH-HHHHHHHHhh-----c-C---CccEEEcCCCCC---hhhccchhhHhhcccc
Q 010472 367 SGLPDETR-AARIILKDFI-----D-G---KLPHFEMPPGMS---HEEVGMEDTQASSLLE 414 (509)
Q Consensus 367 sGLD~~~r-~~~~lLkd~~-----~-g---kl~~~~~pp~~~---~~~~~~~~~~~~~~~~ 414 (509)
+|||+..+ .++.+|+++. + | ..+++...|.+. -++.|+.....+..+.
T Consensus 195 sgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 195 GEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp TCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 99999999 8999998884 2 2 234545555554 4555555555554443
No 78
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.27 E-value=1.3e-12 Score=135.29 Aligned_cols=79 Identities=9% Similarity=-0.050 Sum_probs=64.4
Q ss_pred cCCCCCCccccCCCchHHHHHHHHH------HcCCce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhc
Q 010472 334 NLPKPKPYESQSRPPLALELLRAYC------ASRGYV----ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEV 402 (509)
Q Consensus 334 ~~~~~LSgGq~QR~~~~~~La~ALa------~~p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~ 402 (509)
..+..|||||+|| ++||+||+ .+|+++ ||+|||+..+ .+..+|+.+.+.+.+++..+|++...++
T Consensus 275 ~~~~~LSgGe~qr----~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~ 350 (365)
T 3qf7_A 275 RPARGLSGGERAL----ISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEA 350 (365)
T ss_dssp EEGGGSCHHHHHH----HHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTT
T ss_pred CCchhCCHHHHHH----HHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh
Confidence 3566899999999 99999999 689987 9999999999 9999999997766667777788877666
Q ss_pred cchhhHhhccccccc
Q 010472 403 GMEDTQASSLLELHE 417 (509)
Q Consensus 403 ~~~~~~~~~~~~~~~ 417 (509)
| +.+.++..|++++
T Consensus 351 ~-d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 351 F-DRKLRITGGVVVN 364 (365)
T ss_dssp C-SCEEEEETTEEC-
T ss_pred C-CEEEEEECCEEEe
Confidence 5 5566677777653
No 79
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.26 E-value=4.2e-13 Score=138.35 Aligned_cols=161 Identities=17% Similarity=0.082 Sum_probs=102.4
Q ss_pred CCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHHHHHHHHHHh-c-CCeEEEeehhhhHHhhhcc
Q 010472 82 SDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKD-H-DILFVFWSAKAASAALEGK 159 (509)
Q Consensus 82 sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~-~-gi~~if~Sa~~~~~~~~g~ 159 (509)
+|.+..|+|++.|+.+++|.+++++..+...|+.+++|||+||+++..++.|.+||+. . +......++ ..+.
T Consensus 58 ~~~l~~i~~~~~~l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 131 (357)
T 2e87_A 58 RDNLRKVLERTPGLSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAE------LRRQ 131 (357)
T ss_dssp HHHHHHHHHHSCCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHH------HHHH
T ss_pred HHHHHHHHHhCCCcccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHH------HHHH
Confidence 4667789999999999999999888766667888999999999999999999999986 2 332111111 0000
Q ss_pred cccccccccccccCCCCCCccccCHHHHHH---HHHHHHHHHHHHHhhcCCCCCCCCCcccccccccCccC-CCCcEEEE
Q 010472 160 AVSDTWRTQDTQQNIDDPETKVYSREELLA---RLQYEAEEIVKMRRQAGCSSTGKSNVQSVDESFAGNVA-PKNVIVGF 235 (509)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~~~~~~~~~~Ll~---~l~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~i-~~g~~vgl 235 (509)
+.+.+.. .+......+...+..... ...+ .....++|
T Consensus 132 -----------------------~~~~l~~~~~~~~~~l~~l~~~~~~~~~----------------~~~~~~~~~~v~l 172 (357)
T 2e87_A 132 -----------------------FYGRVASVLRDIDDRLRYLNKAREVLKD----------------LPVVDLEIPTVVI 172 (357)
T ss_dssp -----------------------HHHHHHHHHHHTHHHHHHHHHHHHHGGG----------------SCCCCSSSCEEEE
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------CCccCCCCCEEEE
Confidence 0111221 122222222222211110 0111 24568999
Q ss_pred EecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeec---CeEEEEeCCCccCC
Q 010472 236 VGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIIS---EKLVLCDCPGLVFP 288 (509)
Q Consensus 236 vG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~---~~i~l~d~pg~~~p 288 (509)
+|+||||||||+|.|+|.. ......++.|......... ..+.++|+||....
T Consensus 173 vG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 227 (357)
T 2e87_A 173 AGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDR 227 (357)
T ss_dssp ECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSS
T ss_pred ECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCceEEEEeCCCcccc
Confidence 9999999999999999976 3344566766655433221 34789999998754
No 80
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.23 E-value=5.9e-14 Score=134.24 Aligned_cols=136 Identities=16% Similarity=0.103 Sum_probs=73.4
Q ss_pred CCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHH-HhccCC
Q 010472 228 PKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMV-ASGVLP 304 (509)
Q Consensus 228 ~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v-~~g~~~ 304 (509)
.+|++++|+|+||||||||+++|+|+ . .|.+. +..........+..++|++|.. .+++ ..+. +
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~~~~~~~~~ig~v~q~~----------~enl~~~~~-~ 85 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTRPAVEAGEKLGFLPGTL----------NEKIDPYLR-P 85 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEECSCCTTCCCCSSCC----------------CTTTH-H
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecCCchhhhcceEEecCCH----------HHHHHHHHH-H
Confidence 35899999999999999999999999 7 45552 2111000011122344433321 1222 1100 0
Q ss_pred cchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHHHH
Q 010472 305 IDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AARII 379 (509)
Q Consensus 305 ~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~l 379 (509)
. ...+........+.... .. ..||+|| ++||+||+.+|.+| ||+| ++ .+..+
T Consensus 86 ---~------~~~~~~~~~~~~~~~~l-~~-----glGq~qr----v~lAraL~~~p~lllLDEPts~----~~~~l~~~ 142 (208)
T 3b85_A 86 ---L------HDALRDMVEPEVIPKLM-EA-----GIVEVAP----LAYMRGRTLNDAFVILDEAQNT----TPAQMKMF 142 (208)
T ss_dssp ---H------HHHHTTTSCTTHHHHHH-HT-----TSEEEEE----GGGGTTCCBCSEEEEECSGGGC----CHHHHHHH
T ss_pred ---H------HHHHHHhccHHHHHHHH-Hh-----CCchHHH----HHHHHHHhcCCCEEEEeCCccc----cHHHHHHH
Confidence 0 00000000111112211 11 2299999 99999999999998 9999 55 88999
Q ss_pred HHHhhcCCccEEEcCCCCChhhc
Q 010472 380 LKDFIDGKLPHFEMPPGMSHEEV 402 (509)
Q Consensus 380 Lkd~~~gkl~~~~~pp~~~~~~~ 402 (509)
|+.+ ..+.+++ .+|++...+.
T Consensus 143 l~~l-~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 143 LTRL-GFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp HTTB-CTTCEEE-EEEC------
T ss_pred HHHh-cCCCEEE-EECCHHHHhC
Confidence 9988 4344555 7777665543
No 81
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.21 E-value=8.3e-13 Score=131.23 Aligned_cols=130 Identities=14% Similarity=0.049 Sum_probs=67.9
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccCCcchh
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVLPIDRM 308 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~~~~~~ 308 (509)
-++||||+||||||||||+|+|+.. .|.+.+.|...... .....++++.+...+++.++ +.+++..|......
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~--~~~~~i~~v~q~~~~~~~lt--v~d~~~~g~~~~~~- 77 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT--VEIKAIGHVIEEGGVKMKLT--VIDTPGFGDQINNE- 77 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCC--CSCCEEEESCC----CCEEE--EECCCC--CCSBCT-
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc--eeeeeeEEEeecCCCcCCce--EEechhhhhhcccH-
Confidence 3689999999999999999999876 67777777543211 12345666666555555553 22333222211110
Q ss_pred hhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHHHHHHHHH
Q 010472 309 TEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETRAARIILK 381 (509)
Q Consensus 309 ~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r~~~~lLk 381 (509)
.........+. . .+....+..||+|++|| +++|||++. ++ |+.|+++....++..|+
T Consensus 78 ~~~~~i~~~~~--------~-~~~~~~~~~LS~G~~qr----v~iaRal~~---lllldep~~gL~~lD~~~l~~L~ 138 (270)
T 3sop_A 78 NCWEPIEKYIN--------E-QYEKFLKEEVNIARKKR----IPDTRVHCC---LYFISPTGHSLRPLDLEFMKHLS 138 (270)
T ss_dssp TCSHHHHHHHH--------H-HHHHHHHHHSCTTCCSS----CCCCSCCEE---EEEECCCSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--------H-HHHhhhHHhcCcccchh----hhhheeeee---eEEEecCCCcCCHHHHHHHHHHH
Confidence 00011111111 1 13334455799999999 999998875 43 77999998754433333
No 82
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.21 E-value=4.1e-13 Score=123.92 Aligned_cols=65 Identities=8% Similarity=0.011 Sum_probs=52.0
Q ss_pred CCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHH----------------HH-HHHHHHHHhhcCCccEEEcC
Q 010472 336 PKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDE----------------TR-AARIILKDFIDGKLPHFEMP 394 (509)
Q Consensus 336 ~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~----------------~r-~~~~lLkd~~~gkl~~~~~p 394 (509)
....|+|++|| ++||+|++.+|.++ |+++||+. .+ .+..+|+.+.+.+..++...
T Consensus 81 ~~~~s~g~~qr----v~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vt 156 (171)
T 4gp7_A 81 TNVQESARKPL----IEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYIL 156 (171)
T ss_dssp CCCSHHHHHHH----HHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEE
T ss_pred CCCCHHHHHHH----HHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEe
Confidence 34569999999 99999999999998 99999998 55 66777777755456677777
Q ss_pred CCCChhhccc
Q 010472 395 PGMSHEEVGM 404 (509)
Q Consensus 395 p~~~~~~~~~ 404 (509)
|++..++.++
T Consensus 157 H~~~~~~~~~ 166 (171)
T 4gp7_A 157 NSPEEVEEVV 166 (171)
T ss_dssp CSHHHHHHEE
T ss_pred CCHHHhhhhh
Confidence 8887776554
No 83
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.21 E-value=2.5e-13 Score=137.12 Aligned_cols=139 Identities=14% Similarity=0.077 Sum_probs=84.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHH-HHHhccCC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYD-MVASGVLP 304 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e-~v~~g~~~ 304 (509)
.+++|++++|+||||||||||+++|+|++ .|.+... +.+...+|+. +..+ ++..+ +
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~~-----------------v~q~~~lf~~---ti~~~ni~~~--~ 178 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLSF-----------------ANHKSHFWLA---SLADTRAALV--D 178 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH-TCEEECG-----------------GGTTSGGGGG---GGTTCSCEEE--E
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc-CceEEEE-----------------ecCccccccc---cHHHHhhccC--c
Confidence 47899999999999999999999999998 6666322 1222222221 1111 11111 0
Q ss_pred cchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCceeCCCCCHHHH-HHHHHHHHh
Q 010472 305 IDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYVASSGLPDETR-AARIILKDF 383 (509)
Q Consensus 305 ~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lLPtsGLD~~~r-~~~~lLkd~ 383 (509)
...+ ...+.+...++. + +. +..|||||+|| |||++.+|++|-|++||+.++ .+..
T Consensus 179 --~~~~--~~~~~i~~~L~~-g----ld---g~~LSgGqkQR-------ARAll~~p~iLlTs~LD~~~~~~i~~----- 234 (305)
T 2v9p_A 179 --DATH--ACWRYFDTYLRN-A----LD---GYPVSIDRKHK-------AAVQIKAPPLLVTSNIDVQAEDRYLY----- 234 (305)
T ss_dssp --EECH--HHHHHHHHTTTG-G----GG---TCCEECCCSSC-------CCCEECCCCEEEEESSCSTTCGGGGG-----
T ss_pred --cccH--HHHHHHHHHhHc-c----CC---ccCcCHHHHHH-------HHHHhCCCCEEEECCCCHHHHHHHHH-----
Confidence 0001 111222222321 1 22 66899999999 899999999988999999887 5531
Q ss_pred hcCCccEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 384 IDGKLPHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 384 ~~gkl~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
..|.+....+|++. +++.|++++.++.+
T Consensus 235 ---------ltH~~~~~~~aD~i--vl~~G~iv~~g~~~ 262 (305)
T 2v9p_A 235 ---------LHSRVQTFRFEQPC--TDESGEQPFNITDA 262 (305)
T ss_dssp ---------GTTTEEEEECCCCC--CCC---CCCCCCHH
T ss_pred ---------HhCCHHHHHhCCEE--EEeCCEEEEeCCHH
Confidence 15665555665555 88888888765543
No 84
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.21 E-value=2.4e-13 Score=129.18 Aligned_cols=165 Identities=12% Similarity=0.033 Sum_probs=90.1
Q ss_pred ccCCCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCc--ccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhc-
Q 010472 225 NVAPKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGK--TKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASG- 301 (509)
Q Consensus 225 ~~i~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~--t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g- 301 (509)
.++.+|++++|+||||||||||+++|+|+.+. +.+.+. +..... .....+.|+++....|+.+ ++.+++...
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~--i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~--~~~~~l~~~~ 89 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN--LHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQL--IDQGELLEWA 89 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHSTT--CEECCCEESSCCCT-TCCBTTTBEECCHHHHHHH--HHTTCEEEEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc--eEEcccccccCCcc-cccCCCeeEecCHHHHHHH--HhcCCceeeh
Confidence 35788999999999999999999999998751 112211 111100 0112333444332223222 111111000
Q ss_pred -cCC--cchhhhHHHHHHHHHHh------CCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCC
Q 010472 302 -VLP--IDRMTEHRQAVQVVANR------VPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSG 368 (509)
Q Consensus 302 -~~~--~~~~~~~~~~~~~i~~~------l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsG 368 (509)
.+. ...........+.+.+. +...++.. +....+..|| +|+.+|.++ |++|
T Consensus 90 ~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~lS---------------~l~~~p~~~~LDep~~~ 153 (207)
T 1znw_A 90 EIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARA-IKKTMPEAVT---------------VFLAPPSWQDLQARLIG 153 (207)
T ss_dssp EEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHH-HHHHCTTSEE---------------EEEECSCHHHHHHHHHT
T ss_pred hhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHH-HHHhcCCcEE---------------EEEECCCHHHHHHHHHh
Confidence 000 00000111222334443 45555654 4455555554 667777765 8888
Q ss_pred C----CHHHH-HHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhh
Q 010472 369 L----PDETR-AARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQAS 410 (509)
Q Consensus 369 L----D~~~r-~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~ 410 (509)
+ |+..+ .++.+++++.. .+..++..+|+++++...++.++++
T Consensus 154 l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l 201 (207)
T 1znw_A 154 RGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVG 201 (207)
T ss_dssp TSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC-
T ss_pred cCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHh
Confidence 7 56677 89999999864 4567777789999998877777765
No 85
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.19 E-value=6.6e-13 Score=123.80 Aligned_cols=145 Identities=12% Similarity=-0.010 Sum_probs=82.3
Q ss_pred EEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccc-cceeeecCeEEEEeCCCccCCCCcccHHHHHHhccCCcchhhh
Q 010472 232 IVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKH-FQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVLPIDRMTE 310 (509)
Q Consensus 232 ~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~-~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~~~~~~~~ 310 (509)
+++|+|+||||||||+++|+|... +.+.|.... .........++++.+.. +.. ++++.. +.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~---i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~--~~~~~~-~~------ 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG---KRAIGFWTEEVRDPETKKRTGFRIITT------EGK--KKIFSS-KF------ 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG---GGEEEEEEEEEC------CCEEEEEET------TCC--EEEEEE-TT------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CcCCCEEhhhhccccccceeEEEeecC------cHH--HHHHHh-hc------
Confidence 689999999999999999999874 222332110 00001123344443321 000 000000 00
Q ss_pred HHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHH-----HHHcCCce------eCCCCCHHHH-HHHH
Q 010472 311 HRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRA-----YCASRGYV------ASSGLPDETR-AARI 378 (509)
Q Consensus 311 ~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~A-----La~~p~lL------PtsGLD~~~r-~~~~ 378 (509)
... .. +....+..||+||+|| ++||+| ++.+|+++ |++++|+..+ .+..
T Consensus 64 -----------~~~---~~-~~~~~~~~lSgG~~qr----~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~ 124 (178)
T 1ye8_A 64 -----------FTS---KK-LVGSYGVNVQYFEELA----IPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQ 124 (178)
T ss_dssp -----------CCC---SS-EETTEEECHHHHHHHH----HHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHH
T ss_pred -----------CCc---cc-cccccccCcCHHHHHH----HHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHH
Confidence 000 01 2234456799999999 999996 99999997 8999999988 7777
Q ss_pred HHHHhhcCCccEEEc--CCCCChhhccchhhHhhcccccccCC
Q 010472 379 ILKDFIDGKLPHFEM--PPGMSHEEVGMEDTQASSLLELHESD 419 (509)
Q Consensus 379 lLkd~~~gkl~~~~~--pp~~~~~~~~~~~~~~~~~~~~~~~~ 419 (509)
+|.. .+..++++. .|++...+.+++. .++++.+.+
T Consensus 125 ~l~~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~~~ 161 (178)
T 1ye8_A 125 IMHD--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIELT 161 (178)
T ss_dssp HHTC--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEECC
T ss_pred HHhc--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEEec
Confidence 7765 344233333 4665555443322 345555433
No 86
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.11 E-value=2e-11 Score=114.71 Aligned_cols=157 Identities=18% Similarity=0.255 Sum_probs=82.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCccc---HH----HH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSIS---RY----DM 297 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~---~~----e~ 297 (509)
.+.+|.+++|+|+||||||||+|+|+|... ..+...+|++...........+.++|+||......... .. ..
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 467899999999999999999999999862 33344566665433333334678899999864322111 00 11
Q ss_pred HHh------ccCCcchhhh-HHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eC
Q 010472 298 VAS------GVLPIDRMTE-HRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----AS 366 (509)
Q Consensus 298 v~~------g~~~~~~~~~-~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----Pt 366 (509)
++. ++........ .......+...+...++.........+.+|+|++|+ .++.+++++.+++.+ |+
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 178 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKA---QLNMVREAVLAFNGDVQVETF 178 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHH---HHHHHHHHHGGGCSCEEEEEC
T ss_pred HHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHH---HHHHHHHHHHhcCCCCceEEE
Confidence 111 0000000000 000011122221111222111234455688888776 257888888888642 99
Q ss_pred CCCCHHHH-HHHHHHHHhhc
Q 010472 367 SGLPDETR-AARIILKDFID 385 (509)
Q Consensus 367 sGLD~~~r-~~~~lLkd~~~ 385 (509)
+++|.... .+...|.++..
T Consensus 179 Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 179 SSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp BTTTTBSHHHHHHHHHHHHC
T ss_pred eecCCCCHHHHHHHHHHHHh
Confidence 99999988 88888887754
No 87
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.06 E-value=4.1e-11 Score=123.13 Aligned_cols=165 Identities=8% Similarity=0.034 Sum_probs=98.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccc-cc-------eeeecCeEEEEeCCCccCCCCcccHH
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKH-FQ-------TLIISEKLVLCDCPGLVFPSFSISRY 295 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~-~~-------~~~~~~~i~l~d~pg~~~p~~~~~~~ 295 (509)
++.+|+++||+|+||||||||+++|+|... .|++.+.|.... .. ...+...+.++.+.+. ...
T Consensus 67 ~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~-------~~~ 139 (347)
T 2obl_A 67 TCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDR-------PAL 139 (347)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTS-------CHH
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCC-------CHH
Confidence 477899999999999999999999999887 566666664310 00 0011223444433211 000
Q ss_pred HHHHhccCCcchhhhHHHHHHHHHHhCCc--cchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCceeCCCCCHHH
Q 010472 296 DMVASGVLPIDRMTEHRQAVQVVANRVPR--HVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYVASSGLPDET 373 (509)
Q Consensus 296 e~v~~g~~~~~~~~~~~~~~~~i~~~l~~--~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lLPtsGLD~~~ 373 (509)
..+. ...... .+.+++.. ..+. .....+..+|+|+ |+ +++| +.+|.+ ++|+|+..
T Consensus 140 ~r~~----------~~~~~~-~~ae~~~~~~~~vl--~~ld~~~~lS~g~-r~----v~la---l~~p~~--t~Gldp~~ 196 (347)
T 2obl_A 140 ERMK----------AAFTAT-TIAEYFRDQGKNVL--LMMDSVTRYARAA-RD----VGLA---SGEPDV--RGGFPPSV 196 (347)
T ss_dssp HHHH----------HHHHHH-HHHHHHHTTTCEEE--EEEETHHHHHHHH-HH----HHHH---TTCCCC--BTTBCHHH
T ss_pred HHHH----------HHHHHH-HHHHHHHhccccHH--HHHhhHHHHHHHH-HH----HHHH---cCCCCc--ccCCCHHH
Confidence 0000 000000 01111100 0000 0013345678898 67 7776 466655 89999999
Q ss_pred H-HHHHHHHHhhc--CCc-----cEEEcCCCCChhhccchhhHhhcccccccCCCCc
Q 010472 374 R-AARIILKDFID--GKL-----PHFEMPPGMSHEEVGMEDTQASSLLELHESDASD 422 (509)
Q Consensus 374 r-~~~~lLkd~~~--gkl-----~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
+ .+..+|..+.. ++. +++...|+++ +..++.+..+..|.++..++.+
T Consensus 197 ~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~~l~ 251 (347)
T 2obl_A 197 FSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLTRELA 251 (347)
T ss_dssp HHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBCHHHH
T ss_pred HHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEeCCHH
Confidence 9 99999999863 343 5677789988 6677788888888887655443
No 88
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.05 E-value=8.4e-11 Score=119.40 Aligned_cols=66 Identities=11% Similarity=-0.013 Sum_probs=52.6
Q ss_pred CCCCCCccccCCCchHHHHHHHHH----HcCCce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccch
Q 010472 335 LPKPKPYESQSRPPLALELLRAYC----ASRGYV----ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGME 405 (509)
Q Consensus 335 ~~~~LSgGq~QR~~~~~~La~ALa----~~p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~ 405 (509)
.+..||+||+|| ++||+||+ ..|.++ |+++||+..+ .+..+|+.+..| ..++..+|.....+.|+.
T Consensus 216 ~~~~lS~Gq~q~----v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~vi~~tH~~~~~~~~d~ 290 (322)
T 1e69_A 216 KLSLLSGGEKAL----VGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKH-TQFIVITHNKIVMEAADL 290 (322)
T ss_dssp BGGGSCHHHHHH----HHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTT-SEEEEECCCTTGGGGCSE
T ss_pred chhhCCHHHHHH----HHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCC-CeEEEEECCHHHHhhCce
Confidence 356799999999 99999998 467776 9999999999 999999998655 455666777655566654
No 89
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.03 E-value=1.6e-10 Score=117.97 Aligned_cols=117 Identities=15% Similarity=-0.028 Sum_probs=81.5
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccCC
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVLP 304 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~~ 304 (509)
+.+|++++|+|+||||||||+++|+|+.. .|.+.+.|... .........+.++.
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e-~~~~~~~~~i~~~~----------------------- 223 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE-IVFKHHKNYTQLFF----------------------- 223 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC-CCCSSCSSEEEEEC-----------------------
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec-cccccchhEEEEEe-----------------------
Confidence 34688999999999999999999999976 67777766421 00000001111100
Q ss_pred cchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHHHHHHHH
Q 010472 305 IDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETRAARIIL 380 (509)
Q Consensus 305 ~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r~~~~lL 380 (509)
. +|++|| +.|++||..+|+++ |++. .+..+|
T Consensus 224 --------------------------------g---gg~~~r----~~la~aL~~~p~ilildE~~~~------e~~~~l 258 (330)
T 2pt7_A 224 --------------------------------G---GNITSA----DCLKSCLRMRPDRIILGELRSS------EAYDFY 258 (330)
T ss_dssp --------------------------------B---TTBCHH----HHHHHHTTSCCSEEEECCCCST------HHHHHH
T ss_pred --------------------------------C---CChhHH----HHHHHHhhhCCCEEEEcCCChH------HHHHHH
Confidence 0 788999 99999999999987 7762 356678
Q ss_pred HHhhcCCccEEEcCCCCChhhccchhhHhhcc
Q 010472 381 KDFIDGKLPHFEMPPGMSHEEVGMEDTQASSL 412 (509)
Q Consensus 381 kd~~~gkl~~~~~pp~~~~~~~~~~~~~~~~~ 412 (509)
+.+..|+.+.++..|..+....|++...+..|
T Consensus 259 ~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g 290 (330)
T 2pt7_A 259 NVLCSGHKGTLTTLHAGSSEEAFIRLANMSSS 290 (330)
T ss_dssp HHHHTTCCCEEEEEECSSHHHHHHHHHHHHHT
T ss_pred HHHhcCCCEEEEEEcccHHHHHhhhheehhcC
Confidence 88888887788888888866666655555433
No 90
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.03 E-value=1.9e-11 Score=129.51 Aligned_cols=166 Identities=9% Similarity=-0.013 Sum_probs=106.1
Q ss_pred ccCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCc---cccc-c-----eeeecCeEEEEeCC-CccCCCCcc
Q 010472 225 NVAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGK---TKHF-Q-----TLIISEKLVLCDCP-GLVFPSFSI 292 (509)
Q Consensus 225 ~~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~---t~~~-~-----~~~~~~~i~l~d~p-g~~~p~~~~ 292 (509)
-++.+|++++|+|+||||||||+++|+|+.. .|++.+.|. .... . ...+...+.++.|. ...++.+
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~-- 229 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRM-- 229 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHH--
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHH--
Confidence 4578999999999999999999999999886 677777776 2211 0 11234567777763 2222222
Q ss_pred cHHHHHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCceeCCCCCHH
Q 010472 293 SRYDMVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYVASSGLPDE 372 (509)
Q Consensus 293 ~~~e~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lLPtsGLD~~ 372 (509)
+..+++.... +.... .. ..... + ......+|+|+ || ++|| +.+|.+ ++|+|+.
T Consensus 230 ~v~~~~~~~a-------------e~~~~-~~-~~v~~-~-ld~l~~lS~g~-qr----vslA---l~~p~~--t~glD~~ 282 (438)
T 2dpy_A 230 QGAAYATRIA-------------EDFRD-RG-QHVLL-I-MDSLTRYAMAQ-RE----IALA---IGEPPA--TKGYPPS 282 (438)
T ss_dssp HHHHHHHHHH-------------HHHHT-TT-CEEEE-E-EECHHHHHHHH-HH----HHHH---TTCCCC--SSSCCTT
T ss_pred HHHHHHHHHH-------------HHHHh-CC-CCHHH-H-HHhHHHHHHHH-HH----HHHH---hCCCcc--cccCCHH
Confidence 2222222210 00001 00 01111 1 11234578898 77 7777 777776 9999999
Q ss_pred HH-HHHHHHHHhhc-----CC----ccEEEcCCCCChhhccchhhHhhcccccccCCCC
Q 010472 373 TR-AARIILKDFID-----GK----LPHFEMPPGMSHEEVGMEDTQASSLLELHESDAS 421 (509)
Q Consensus 373 ~r-~~~~lLkd~~~-----gk----l~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
.+ .+..+|..+.+ |. .+++...|+++ +++++.+..+..|.++.....
T Consensus 283 ~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl~~~~ 339 (438)
T 2dpy_A 283 VFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVLSRRL 339 (438)
T ss_dssp HHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEECHHH
T ss_pred HHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEEeCCH
Confidence 99 99999988865 33 26677789988 566777777788888765443
No 91
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.98 E-value=9.9e-12 Score=125.41 Aligned_cols=150 Identities=11% Similarity=0.040 Sum_probs=89.1
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc-----eeee--cCeEEEEeCCCc-cCCCCcccHHH
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ-----TLII--SEKLVLCDCPGL-VFPSFSISRYD 296 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~-----~~~~--~~~i~l~d~pg~-~~p~~~~~~~e 296 (509)
+.+|++++|+|+||||||||+++|+|... .|.+.+.|...... ...+ +..+.++.+... .+|.. +..+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~--~v~e 174 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT--VLSK 174 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH--HHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH--HHHH
Confidence 56899999999999999999999999876 67888877543211 0111 234677766544 44433 3444
Q ss_pred HHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCC--ce---eCCCCCH
Q 010472 297 MVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRG--YV---ASSGLPD 371 (509)
Q Consensus 297 ~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~--lL---PtsGLD~ 371 (509)
++..+.... .+ ...++..++.+ +....+.+|| +|| +.|++|++.+|. +| ||+|+|+
T Consensus 175 ~l~~~~~~~---~d--------~~lldt~gl~~-~~~~~~~eLS---kqr----~~iaral~~~P~e~lLvLDptsglD~ 235 (302)
T 3b9q_A 175 AVKRGKEEG---YD--------VVLCDTSGRLH-TNYSLMEELI---ACK----KAVGKIVSGAPNEILLVLDGNTGLNM 235 (302)
T ss_dssp HHHHHHHTT---CS--------EEEECCCCCSS-CCHHHHHHHH---HHH----HHHHTTSTTCCSEEEEEEEGGGGGGG
T ss_pred HHHHHHHcC---Cc--------chHHhcCCCCc-chhHHHHHHH---HHH----HHHHHhhccCCCeeEEEEeCCCCcCH
Confidence 443321100 00 01233333332 2233344566 677 999999999999 77 9999998
Q ss_pred HHHHHHHHHHHhh-cCCccEEEcCCCCChhhcc
Q 010472 372 ETRAARIILKDFI-DGKLPHFEMPPGMSHEEVG 403 (509)
Q Consensus 372 ~~r~~~~lLkd~~-~gkl~~~~~pp~~~~~~~~ 403 (509)
..+. +.+. ..++..+..+| ++.....
T Consensus 236 ~~~~-----~~~~~~~g~t~iiiTh-lD~~~~~ 262 (302)
T 3b9q_A 236 LPQA-----REFNEVVGITGLILTK-LDGSARG 262 (302)
T ss_dssp HHHH-----HHHHHHTCCCEEEEEC-CSSCSCT
T ss_pred HHHH-----HHHHHhcCCCEEEEeC-CCCCCcc
Confidence 7652 3444 23444555556 3443333
No 92
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.92 E-value=3.3e-11 Score=124.32 Aligned_cols=159 Identities=10% Similarity=0.017 Sum_probs=92.8
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccc-----eeee--cCeEEEEeCCCc-cCCCCcccHHH
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQ-----TLII--SEKLVLCDCPGL-VFPSFSISRYD 296 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~-----~~~~--~~~i~l~d~pg~-~~p~~~~~~~e 296 (509)
+.+|++++|||+||||||||+++|+|.+. .|.+.+.|...... ...+ +..+.++.+... .+|.. +..+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~--tv~e 231 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT--VLSK 231 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH--HHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh--hHHH
Confidence 56899999999999999999999999876 67888777553211 0111 234677776543 44433 3444
Q ss_pred HHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCC--ce---eCCCCCH
Q 010472 297 MVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRG--YV---ASSGLPD 371 (509)
Q Consensus 297 ~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~--lL---PtsGLD~ 371 (509)
++..+.... .+ ...++..++.+ +...++.+|| +|| +.|++|++.+|. +| ||+|+|.
T Consensus 232 ~l~~~~~~~---~d--------~~lldt~Gl~~-~~~~~~~eLS---kqr----~~iaral~~~P~e~lLvLDpttglD~ 292 (359)
T 2og2_A 232 AVKRGKEEG---YD--------VVLCDTSGRLH-TNYSLMEELI---ACK----KAVGKIVSGAPNEILLVLDGNTGLNM 292 (359)
T ss_dssp HHHHHHHTT---CS--------EEEEECCCCSS-CCHHHHHHHH---HHH----HHHHHHSTTCCSEEEEEEEGGGGGGG
T ss_pred HHHHHHhCC---CH--------HHHHHhcCCCh-hhhhHHHHHH---HHH----HHHHHHHhcCCCceEEEEcCCCCCCH
Confidence 443321100 00 01122223322 2223344566 677 999999999999 77 9999998
Q ss_pred HHHHHHHHHHHhhc-CCccEEEcCCCCChhhccchhhHhhc
Q 010472 372 ETRAARIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQASS 411 (509)
Q Consensus 372 ~~r~~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~~~~ 411 (509)
..+. +.+.+ ..+..+..+|.-..+.+.....+...
T Consensus 293 ~~~~-----~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~ 328 (359)
T 2og2_A 293 LPQA-----REFNEVVGITGLILTKLDGSARGGCVVSVVEE 328 (359)
T ss_dssp HHHH-----HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHH
T ss_pred HHHH-----HHHHHhcCCeEEEEecCcccccccHHHHHHHH
Confidence 7652 33432 34455555563233444444444433
No 93
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.89 E-value=2e-10 Score=118.80 Aligned_cols=55 Identities=33% Similarity=0.493 Sum_probs=34.3
Q ss_pred EEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccce--eeec-CeEEEEeCCCccC
Q 010472 232 IVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQT--LIIS-EKLVLCDCPGLVF 287 (509)
Q Consensus 232 ~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~--~~~~-~~i~l~d~pg~~~ 287 (509)
+++|+|+||||||||+|+|+|... -+...++.|++... +.+. ..+.++|++|++.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~ 238 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIR 238 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchh
Confidence 499999999999999999999764 23344566654432 2222 3578899999865
No 94
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.88 E-value=7.5e-11 Score=119.50 Aligned_cols=150 Identities=12% Similarity=0.024 Sum_probs=88.0
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc-CCc
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV-LPI 305 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~-~~~ 305 (509)
+.+|+++||+|+||||||||+++|+|+.... .|. ..++++.+.+.++|. ++.+++.... +..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~----~G~----------~~v~~v~qd~~~~~~---t~~e~~~~~~~~g~ 149 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW----DHH----------PRVDLVTTDGFLYPN---AELQRRNLMHRKGF 149 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS----TTC----------CCEEEEEGGGGBCCH---HHHHHTTCTTCTTS
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc----CCC----------CeEEEEecCccCCcc---cHHHHHHHHHhcCC
Confidence 6789999999999999999999999987531 221 347788887777664 3444432211 111
Q ss_pred chhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHHHHHHHHH
Q 010472 306 DRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETRAARIILK 381 (509)
Q Consensus 306 ~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r~~~~lLk 381 (509)
....+ ...+..+.+.+. .. +....+..||+|++|| +.+|+|++.+|.++ |+..+|+.... +.
T Consensus 150 ~~~~d-~~~~~~~L~~l~----~~-~~~~~~~~lS~G~~qR----v~~a~al~~~p~ilIlDep~~~~d~~~~~----l~ 215 (312)
T 3aez_A 150 PESYN-RRALMRFVTSVK----SG-SDYACAPVYSHLHYDI----IPGAEQVVRHPDILILEGLNVLQTGPTLM----VS 215 (312)
T ss_dssp GGGBC-HHHHHHHHHHHH----TT-CSCEEEEEEETTTTEE----EEEEEEEECSCSEEEEECTTTTCCCSSCC----GG
T ss_pred ChHHH-HHHHHHHHHHhC----CC-cccCCcccCChhhhhh----hhhHHHhccCCCEEEECCccccCCcchHH----HH
Confidence 00011 112222222222 11 2223345799999999 89999999999998 88887642111 11
Q ss_pred HhhcCCccEEEcCCCCChhhccchhhH
Q 010472 382 DFIDGKLPHFEMPPGMSHEEVGMEDTQ 408 (509)
Q Consensus 382 d~~~gkl~~~~~pp~~~~~~~~~~~~~ 408 (509)
++. ...+++..|.......++.+...
T Consensus 216 ~~~-D~~I~V~a~~~~~~~R~i~R~~~ 241 (312)
T 3aez_A 216 DLF-DFSLYVDARIEDIEQWYVSRFLA 241 (312)
T ss_dssp GGC-SEEEEEEECHHHHHHHHHHHHHH
T ss_pred Hhc-CcEEEEECCHHHHHHHHHHHHHH
Confidence 221 23455566554444444444443
No 95
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.88 E-value=2.9e-12 Score=123.00 Aligned_cols=144 Identities=8% Similarity=-0.058 Sum_probs=74.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCccccccee--eecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTL--IISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~--~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
++++|++++|+||||||||||+++|+|+.+ |.+.+ |........ .....+.|+++....|+.+.. ....+..+.+
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p-G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~l~~~~~ 95 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTLIKKLLNEFP-NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK-NEDFLEYDNY 95 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHHHHHHHHHST-TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH-TTCEEEEEEE
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHhhCC-CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh-ccchhhhhhc
Confidence 467899999999999999999999999885 77776 543211100 011223333332222221100 0000000100
Q ss_pred CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHH-----HHHHHHcCCce----eCCCCCHHHH
Q 010472 304 PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALEL-----LRAYCASRGYV----ASSGLPDETR 374 (509)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~L-----a~ALa~~p~lL----PtsGLD~~~r 374 (509)
...........+..+.+..... + + ...+|||++|| +.| +++|+..|.++ |++++|..+.
T Consensus 96 ~~~~~g~~~~~i~~~l~~~~~~-i---l----~~~lsggq~qR----~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~ 163 (218)
T 1z6g_A 96 ANNFYGTLKSEYDKAKEQNKIC-L---F----EMNINGVKQLK----KSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQ 163 (218)
T ss_dssp TTEEEEEEHHHHHHHHHTTCEE-E---E----EECHHHHHHHT----TCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCH
T ss_pred ccccCCCcHHHHHHHHhCCCcE-E---E----EecHHHHHHHH----HHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCH
Confidence 0000001112233333322211 1 1 14689999999 778 67787777765 8888887655
Q ss_pred -HHHHHHHHhh
Q 010472 375 -AARIILKDFI 384 (509)
Q Consensus 375 -~~~~lLkd~~ 384 (509)
.+...|..+.
T Consensus 164 ~~i~~~l~~~~ 174 (218)
T 1z6g_A 164 EQIQKRMEQLN 174 (218)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 6666665543
No 96
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.79 E-value=5.8e-10 Score=120.67 Aligned_cols=149 Identities=10% Similarity=0.004 Sum_probs=93.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccCCc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVLPI 305 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~~~ 305 (509)
.+.+|++++|+|+||+|||||+++|+|.... .|.. .+++..+... ......+. . +..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~-----~G~~----------vi~~~~ee~~------~~l~~~~~-~-~g~ 333 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACA-----NKER----------AILFAYEESR------AQLLRNAY-S-WGM 333 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHT-----TTCC----------EEEEESSSCH------HHHHHHHH-T-TSC
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh-----CCCC----------EEEEEEeCCH------HHHHHHHH-H-cCC
Confidence 5789999999999999999999999997542 1210 1222222110 00011110 0 110
Q ss_pred chhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce---eCCCCCHH-----HH-HH
Q 010472 306 DRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV---ASSGLPDE-----TR-AA 376 (509)
Q Consensus 306 ~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL---PtsGLD~~-----~r-~~ 376 (509)
+. ..+. .. ++.. +....+..||+|++|| +.++++++.+|+++ |++|||.. .+ .+
T Consensus 334 ----~~----~~~~-~~---g~~~-~~~~~p~~LS~g~~q~----~~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i 396 (525)
T 1tf7_A 334 ----DF----EEME-RQ---NLLK-IVCAYPESAGLEDHLQ----IIKSEINDFKPARIAIDSLSALARGVSNNAFRQFV 396 (525)
T ss_dssp ----CH----HHHH-HT---TSEE-ECCCCGGGSCHHHHHH----HHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHH
T ss_pred ----CH----HHHH-hC---CCEE-EEEeccccCCHHHHHH----HHHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHH
Confidence 00 0111 11 1222 3344567899999999 99999999999988 99999988 78 88
Q ss_pred HHHHHHhhcCCccEEEcCCCC----------ChhhccchhhHhhcccc
Q 010472 377 RIILKDFIDGKLPHFEMPPGM----------SHEEVGMEDTQASSLLE 414 (509)
Q Consensus 377 ~~lLkd~~~gkl~~~~~pp~~----------~~~~~~~~~~~~~~~~~ 414 (509)
..+++.+++.+++++...|.+ ...+++++.+.+++.++
T Consensus 397 ~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 397 IGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 899998876555555444554 44556666666555554
No 97
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.77 E-value=1.5e-09 Score=111.06 Aligned_cols=75 Identities=8% Similarity=-0.029 Sum_probs=52.5
Q ss_pred ccCCCCCCccccCCCch--HHHHHHHHHHcCCce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccch
Q 010472 333 INLPKPKPYESQSRPPL--ALELLRAYCASRGYV----ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGME 405 (509)
Q Consensus 333 ~~~~~~LSgGq~QR~~~--~~~La~ALa~~p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~ 405 (509)
...+..||+||+|+-.- .+++|++++.+|.+| |++|||+..+ .+..+|+.+......++..+|+..-...|++
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~ 322 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADH 322 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSE
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCE
Confidence 34567899999994000 166777777899987 9999999999 9999999986533345555566544555544
Q ss_pred hh
Q 010472 406 DT 407 (509)
Q Consensus 406 ~~ 407 (509)
..
T Consensus 323 ~~ 324 (339)
T 3qkt_A 323 VI 324 (339)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 98
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.75 E-value=1.4e-11 Score=133.35 Aligned_cols=163 Identities=7% Similarity=-0.113 Sum_probs=91.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHH--HhcCCc--ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINA--LVGQKR--TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~--L~G~~~--~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
.+++|++++|+|+||||||||+++ +.|+.. .|.+.+.|.............++++.|.....+.+ ....
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l-------~~~~ 107 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKL-------FILD 107 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSE-------EEEE
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcE-------EEEe
Confidence 467899999999999999999999 678876 67788877652211111112222222211000000 0000
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCceeCCCCCHHHH-HHHHHH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYVASSGLPDETR-AARIIL 380 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lLPtsGLD~~~r-~~~~lL 380 (509)
... . ....+.+..+++.. +....+..||+|+.|+ +.|..+.+.. |.+++|+..+ .+..++
T Consensus 108 ~~~-----~-----~~~~~~l~~~~l~~-~~~~~~~~LS~g~~~~----lilDe~t~~~----~~~~lD~~~~~~l~~ll 168 (525)
T 1tf7_A 108 ASP-----D-----PEGQEVVGGFDLSA-LIERINYAIQKYRARR----VSIDSVTSVF----QQYDASSVVRRELFRLV 168 (525)
T ss_dssp CCC-----C-----SSCCSCCSSHHHHH-HHHHHHHHHHHHTCSE----EEEECSTTTS----TTTCCHHHHHHHHHHHH
T ss_pred cCc-----c-----cchhhhhcccCHHH-HHHHHHHHHHHcCCCE----EEECCHHHHH----HhcCCHHHHHHHHHHHH
Confidence 000 0 00112233444544 3344455677777776 4333222221 3467888888 999999
Q ss_pred HHhhcCCccEEEcCCCCCh---------hhccchhhHhhcccc
Q 010472 381 KDFIDGKLPHFEMPPGMSH---------EEVGMEDTQASSLLE 414 (509)
Q Consensus 381 kd~~~gkl~~~~~pp~~~~---------~~~~~~~~~~~~~~~ 414 (509)
+.+++.+++++...|.+.. .+++++.+.+++.+.
T Consensus 169 ~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 169 ARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp HHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred HHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 9997645566666777766 356566777776644
No 99
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.69 E-value=2e-09 Score=99.85 Aligned_cols=40 Identities=20% Similarity=0.137 Sum_probs=34.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKT 265 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t 265 (509)
.+.+|++++|+|+||||||||+++|+|....|.+.+.|..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~ 44 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 44 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccc
Confidence 3678999999999999999999999998667888887754
No 100
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.68 E-value=3.8e-10 Score=115.46 Aligned_cols=38 Identities=32% Similarity=0.399 Sum_probs=30.5
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPG 263 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G 263 (509)
.+.+|++++|+|+||||||||+|+|+|... .|.+.+.|
T Consensus 51 ~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~ 90 (337)
T 2qm8_A 51 QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 90 (337)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence 357899999999999999999999998764 45554433
No 101
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.68 E-value=1e-09 Score=103.67 Aligned_cols=131 Identities=11% Similarity=-0.055 Sum_probs=73.9
Q ss_pred CCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccCCcch
Q 010472 228 PKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVLPIDR 307 (509)
Q Consensus 228 ~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~~~~~ 307 (509)
.+|+++||+|+||||||||+++|+|+... .+.++++..+.++....+..+...........
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 64 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGE-------------------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDA 64 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGG-------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCC-------------------CeEEEecCccccCcccccHHHhcCCCCCChhh
Confidence 46899999999999999999999997542 35667776665532222333332221111011
Q ss_pred hhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCCC-------CCHHHH-H
Q 010472 308 MTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASSG-------LPDETR-A 375 (509)
Q Consensus 308 ~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsG-------LD~~~r-~ 375 (509)
.+ ...+..+.+.+ ++.+ ........+|+|+++.....+.++++++.++.++ |+++ ||.... .
T Consensus 65 -~~-~~~~~~~l~~~---~~~~-~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~ 138 (211)
T 3asz_A 65 -FD-LALYLEHAQAL---LRGL-PVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADER 138 (211)
T ss_dssp -BC-HHHHHHHHHHH---HTTC-CEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHH
T ss_pred -hh-HHHHHHHHHHH---HcCC-CcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHH
Confidence 11 11122222222 2222 2233455688887532100056778888888876 7888 886666 6
Q ss_pred HHHHHHHh
Q 010472 376 ARIILKDF 383 (509)
Q Consensus 376 ~~~lLkd~ 383 (509)
+...|+..
T Consensus 139 ~~r~l~r~ 146 (211)
T 3asz_A 139 FIRRLKRD 146 (211)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666654
No 102
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.66 E-value=3.5e-10 Score=110.05 Aligned_cols=124 Identities=14% Similarity=0.145 Sum_probs=67.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccCCc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVLPI 305 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~~~ 305 (509)
++.+|.++||+|+||||||||+++|+|.+ |.+.+. .....++++++.. +++.++.........+.+..
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~l--G~~~~~---------~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~~~ 88 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELL--GQNEVE---------QRQRKVVILSQDR-FYKVLTAEQKAKALKGQYNF 88 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHH--TGGGSC---------GGGCSEEEEEGGG-GBCCCCHHHHHHHHTTCCCT
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHh--chhccc---------ccCCceEEEeCCc-CccccCHhHhhhhhccCCCC
Confidence 46789999999999999999999999965 222221 1344677888875 55655332222222232221
Q ss_pred chhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCceeCCCCCH
Q 010472 306 DRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYVASSGLPD 371 (509)
Q Consensus 306 ~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lLPtsGLD~ 371 (509)
...... ....+.+.+.. +.. .....+..+|+|++|| +.+ ++++..|+++-..|++.
T Consensus 89 ~~~~~~--~~~~~~~~L~~--l~~-~~~~~~~~ls~g~~~r----~~~-~~~~~~~~~lilDg~~~ 144 (245)
T 2jeo_A 89 DHPDAF--DNDLMHRTLKN--IVE-GKTVEVPTYDFVTHSR----LPE-TTVVYPADVVLFEGILV 144 (245)
T ss_dssp TSGGGB--CHHHHHHHHHH--HHT-TCCEEECCEETTTTEE----CSS-CEEECCCSEEEEECTTT
T ss_pred CCcccc--cHHHHHHHHHH--HHC-CCCeecccccccccCc----cCc-eEEecCCCEEEEeCccc
Confidence 110000 01111122111 112 2234456799999999 555 46677788773344443
No 103
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.61 E-value=1.6e-09 Score=104.32 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=25.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHh--cC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALV--GQ 253 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~--G~ 253 (509)
.+++|++++|+||||||||||+++|+ |.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 47889999999999999999999999 65
No 104
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.61 E-value=4.6e-10 Score=113.31 Aligned_cols=152 Identities=16% Similarity=-0.025 Sum_probs=79.1
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccce-----eee--cCeEEEEeCCCccCCCCcccHHHHHH
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQT-----LII--SEKLVLCDCPGLVFPSFSISRYDMVA 299 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~-----~~~--~~~i~l~d~pg~~~p~~~~~~~e~v~ 299 (509)
+|++++|+|+||||||||+++|+|+.. .|.+.+.|....... ..+ +..+.++.|....+|.. ++.+++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~--~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAA--LAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHH--HHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHH--HHHHHHH
Confidence 689999999999999999999999876 677777775532110 001 12355555543333322 2223322
Q ss_pred hccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCceeCCCCCHHHH-HHHH
Q 010472 300 SGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYVASSGLPDETR-AARI 378 (509)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lLPtsGLD~~~r-~~~~ 378 (509)
.+... . .. ...++..++.+ .....+..| .+|| ..|+||++..|..+-. .||+.++ .+..
T Consensus 179 ~~~~~-----~----~d--~~llDt~G~~~-~~~~~~~eL---s~~r----~~iaRal~~~P~~~lL-vLDa~t~~~~~~ 238 (304)
T 1rj9_A 179 AMKAR-----G----YD--LLFVDTAGRLH-TKHNLMEEL---KKVK----RAIAKADPEEPKEVWL-VLDAVTGQNGLE 238 (304)
T ss_dssp HHHHH-----T----CS--EEEECCCCCCT-TCHHHHHHH---HHHH----HHHHHHCTTCCSEEEE-EEETTBCTHHHH
T ss_pred HHHhC-----C----CC--EEEecCCCCCC-chHHHHHHH---HHHH----HHHHHhhcCCCCeEEE-EEcHHHHHHHHH
Confidence 11000 0 00 00111112111 111111122 2566 8899999999993211 3444444 5556
Q ss_pred HHHHhhc-CCccEEEcCCCCChhhc
Q 010472 379 ILKDFID-GKLPHFEMPPGMSHEEV 402 (509)
Q Consensus 379 lLkd~~~-gkl~~~~~pp~~~~~~~ 402 (509)
.++.+.+ .++..+..+|....+..
T Consensus 239 ~~~~~~~~~~~t~iivTh~d~~a~g 263 (304)
T 1rj9_A 239 QAKKFHEAVGLTGVIVTKLDGTAKG 263 (304)
T ss_dssp HHHHHHHHHCCSEEEEECTTSSCCC
T ss_pred HHHHHHHHcCCcEEEEECCcccccc
Confidence 6666654 24555666665444443
No 105
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.61 E-value=8.9e-09 Score=117.92 Aligned_cols=75 Identities=7% Similarity=-0.122 Sum_probs=52.0
Q ss_pred CCCccccCCCchHHHHHHHH--HHcCCce----eCCCCCHHHH-HH-HHHHHHhhc-CCccEEEcCCCCChhhccchhhH
Q 010472 338 PKPYESQSRPPLALELLRAY--CASRGYV----ASSGLPDETR-AA-RIILKDFID-GKLPHFEMPPGMSHEEVGMEDTQ 408 (509)
Q Consensus 338 ~LSgGq~QR~~~~~~La~AL--a~~p~lL----PtsGLD~~~r-~~-~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~~~ 408 (509)
.+|+++.++ .++++++ +.+|.++ |++|+|+..+ ++ +.+++.+.+ .+..++..+|+..-.+++++...
T Consensus 721 ~lStf~~e~----~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~ 796 (934)
T 3thx_A 721 GVSTFMAEM----LETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPT 796 (934)
T ss_dssp --CHHHHHH----HHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTT
T ss_pred hHhhhHHHH----HHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccce
Confidence 466666666 6677777 8889887 9999999888 65 788888875 35566667888777776665544
Q ss_pred hhccccccc
Q 010472 409 ASSLLELHE 417 (509)
Q Consensus 409 ~~~~~~~~~ 417 (509)
+..|.+..
T Consensus 797 -v~ng~v~~ 804 (934)
T 3thx_A 797 -VNNLHVTA 804 (934)
T ss_dssp -EEEEEEEE
T ss_pred -eEeeEEEE
Confidence 44555543
No 106
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.55 E-value=7.7e-09 Score=118.17 Aligned_cols=65 Identities=18% Similarity=0.082 Sum_probs=49.8
Q ss_pred CCCCccccCCCchHHHHHHHHHHcCCce----eCCCCCHHHH-HHH-HHHHHhhc-CCccEEEcCCCCChhhccchh
Q 010472 337 KPKPYESQSRPPLALELLRAYCASRGYV----ASSGLPDETR-AAR-IILKDFID-GKLPHFEMPPGMSHEEVGMED 406 (509)
Q Consensus 337 ~~LSgGq~QR~~~~~~La~ALa~~p~lL----PtsGLD~~~r-~~~-~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~ 406 (509)
..+|+|++++ ..++++ +.+|.++ |++|+|+..+ ++. .+++.+.+ .+..++..+|++.-.+++++.
T Consensus 734 stfs~em~~~----~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 734 STFMEELTDT----AEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp CCHHHHHHHH----HHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHT
T ss_pred HHhhHHHHHH----HHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhc
Confidence 4567787777 777777 7889987 9999999988 654 88888854 456677778998888777654
No 107
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.49 E-value=1.4e-07 Score=93.01 Aligned_cols=38 Identities=21% Similarity=0.148 Sum_probs=32.0
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCCc---ceEEeeCCc
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQKR---TGVTSTPGK 264 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~~---~g~~~~~G~ 264 (509)
+.+|++++|+||||||||||+++|+|... .|.+.+.|.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~ 62 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED 62 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC
Confidence 57899999999999999999999999875 466665554
No 108
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.48 E-value=1.8e-08 Score=105.89 Aligned_cols=139 Identities=20% Similarity=0.145 Sum_probs=78.9
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccce--eeec--CeEEEEeCCCccCCCCcccHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQT--LIIS--EKLVLCDCPGLVFPSFSISRYDMVASG 301 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~--~~~~--~~i~l~d~pg~~~p~~~~~~~e~v~~g 301 (509)
+++.+.+++|||+||||||||||+|+|... ....++.+|..... .... ..+.+.|+||+... . ... .+
T Consensus 153 elk~g~~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~-a--~~~----~~ 224 (416)
T 1udx_A 153 ELMLIADVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEG-A--SEG----KG 224 (416)
T ss_dssp EECCSCSEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCC-G--GGS----CC
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEecCcceEEEEeccccccc-h--hhh----hh
Confidence 567889999999999999999999999854 22234444443221 1121 45788899987521 1 000 00
Q ss_pred cCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCceeCCCCCHHHH-HHHHHH
Q 010472 302 VLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYVASSGLPDETR-AARIIL 380 (509)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lLPtsGLD~~~r-~~~~lL 380 (509)
+ .. .....+..+...+..+++. ...+..+|++++|+ ..++++|+..|.++-.+++|...+ .+..+.
T Consensus 225 L-~~----~fl~~~era~~lL~vvDls----~~~~~~ls~g~~el----~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~ 291 (416)
T 1udx_A 225 L-GL----EFLRHIARTRVLLYVLDAA----DEPLKTLETLRKEV----GAYDPALLRRPSLVALNKVDLLEEEAVKALA 291 (416)
T ss_dssp S-CH----HHHHHHTSSSEEEEEEETT----SCHHHHHHHHHHHH----HHHCHHHHHSCEEEEEECCTTSCHHHHHHHH
T ss_pred h-hH----HHHHHHHHHHhhhEEeCCc----cCCHHHHHHHHHHH----HHHhHHhhcCCEEEEEECCChhhHHHHHHHH
Confidence 0 00 0000000011111111111 12233578888888 899999999999986688887655 334444
Q ss_pred HHhhc
Q 010472 381 KDFID 385 (509)
Q Consensus 381 kd~~~ 385 (509)
+.+..
T Consensus 292 ~~l~~ 296 (416)
T 1udx_A 292 DALAR 296 (416)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 44444
No 109
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.46 E-value=3.1e-08 Score=98.71 Aligned_cols=30 Identities=17% Similarity=0.047 Sum_probs=27.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR 255 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~ 255 (509)
.+.+|++++|+|+||+|||||++.|+|...
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999999865
No 110
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.44 E-value=1e-08 Score=96.36 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=28.5
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGK 264 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~ 264 (509)
|++++|+|+||||||||+++|+|... .| +.+.|.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~~~G-i~~~g~ 35 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLKSSG-VPVDGF 35 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHHHTT-CCCEEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcccCC-EEEcCE
Confidence 57899999999999999999999875 56 555553
No 111
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.44 E-value=7.7e-08 Score=101.03 Aligned_cols=45 Identities=7% Similarity=0.251 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCce----eCCCCCHHHH-HHHHHHHH-hhcCCccEEEcCC
Q 010472 351 LELLRAYCASRGYV----ASSGLPDETR-AARIILKD-FIDGKLPHFEMPP 395 (509)
Q Consensus 351 ~~La~ALa~~p~lL----PtsGLD~~~r-~~~~lLkd-~~~gkl~~~~~pp 395 (509)
++++++|.....++ |+..|.+... .+...|+. +...++.+|..|.
T Consensus 167 ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 167 LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 78999998777776 7788887777 77777775 7666666666553
No 112
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.38 E-value=7.8e-09 Score=95.59 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=27.5
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCc-----ceEEeeCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKR-----TGVTSTPGKT 265 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~-----~g~~~~~G~t 265 (509)
.+++|+|++|||||||+++|+|.+. .|.+.+.|..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 4799999999999999999999865 5778887765
No 113
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.38 E-value=1.2e-07 Score=86.52 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=36.5
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCcccc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKH 267 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~ 267 (509)
++.+|++++|+|+||||||||+++|+|... .|.+.++|.+..
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~~~G~V~~~g~~i~ 71 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLV 71 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCE
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhCCCCCeEEECCEeee
Confidence 357899999999999999999999999876 688888887653
No 114
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.35 E-value=3.6e-08 Score=91.37 Aligned_cols=76 Identities=3% Similarity=-0.118 Sum_probs=44.5
Q ss_pred CccccCCCchHHHHHH------HHHHcCCcee-CCCCCHHHH-HHHHHHHHhhcCCccEEEcCCC-CChhhccchhhHhh
Q 010472 340 PYESQSRPPLALELLR------AYCASRGYVA-SSGLPDETR-AARIILKDFIDGKLPHFEMPPG-MSHEEVGMEDTQAS 410 (509)
Q Consensus 340 SgGq~QR~~~~~~La~------ALa~~p~lLP-tsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~-~~~~~~~~~~~~~~ 410 (509)
|+|++++ +.++. +++.++.... -.++|+..+ . +..+..+......++...+. +++.+.+++.++
T Consensus 96 s~g~~~~----~~~i~L~~~~e~l~~R~~~r~~d~~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~-- 168 (189)
T 2bdt_A 96 AKVDDVE----IRFIILWTNREELLRRDALRKKDEQMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK-- 168 (189)
T ss_dssp HHCSSEE----EEEEEEECCHHHHHHHTTTSCC----CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--
T ss_pred hcccCCC----eEEEEEeCCHHHHHHHHHhccccccCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--
Confidence 5566555 33444 6666666553 257888766 6 77888775544556667777 777777777776
Q ss_pred cccccccCCCCc
Q 010472 411 SLLELHESDASD 422 (509)
Q Consensus 411 ~~~~~~~~~~~~ 422 (509)
..|+++..++.+
T Consensus 169 ~~g~~~~~~~~~ 180 (189)
T 2bdt_A 169 TNPRFIFCMAGD 180 (189)
T ss_dssp HCGGGSCC----
T ss_pred hCCcEEEeecCC
Confidence 667776655443
No 115
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.34 E-value=2.8e-08 Score=109.37 Aligned_cols=137 Identities=12% Similarity=0.130 Sum_probs=71.2
Q ss_pred EEEEEecCCCCHhHHHHHHhcCCc---ceEEeeCCcccccce----eeecCeEEEEeCCCccCCCCcccHHHHHHhccCC
Q 010472 232 IVGFVGYPNVGKSSTINALVGQKR---TGVTSTPGKTKHFQT----LIISEKLVLCDCPGLVFPSFSISRYDMVASGVLP 304 (509)
Q Consensus 232 ~vglvG~nGaGKSTLln~L~G~~~---~g~~~~~G~t~~~~~----~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~~ 304 (509)
.+||||+||||||||+++|+|+.. .|.+.+.|....... ...+..++++++...+++.. ++.+++..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~--tv~e~i~~---- 120 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDAS--EVEKEINK---- 120 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHH--HHHTTHHH----
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHH--HHHHHHHH----
Confidence 399999999999999999999973 677777776532111 11233454544433332221 11111110
Q ss_pred cchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----e------CCCCCHHHH
Q 010472 305 IDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----A------SSGLPDETR 374 (509)
Q Consensus 305 ~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----P------tsGLD~~~r 374 (509)
....+ ... ....| .+. +.+..+....|.++ | ++|+|+..+
T Consensus 121 -------------~~~~~---------~~~-~~~~s---~~~----i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~ 170 (608)
T 3szr_A 121 -------------AQNAI---------AGE-GMGIS---HEL----ITLEISSRDVPDLTLIDLPGITRVAVGNQPADIG 170 (608)
T ss_dssp -------------HHHHH---------HCS-SSCCC---SCC----EEEEEEESSSCCEEEEECCC------CCSSCSHH
T ss_pred -------------HHHHh---------cCC-ccccc---hHH----HHHHhcCCCCCceeEeeCCCccccccCCCCHHHH
Confidence 00000 000 00011 111 11222223345554 5 999999988
Q ss_pred -HHHHHHHHhhc--CCccEEEcCCCCChhhccc
Q 010472 375 -AARIILKDFID--GKLPHFEMPPGMSHEEVGM 404 (509)
Q Consensus 375 -~~~~lLkd~~~--gkl~~~~~pp~~~~~~~~~ 404 (509)
.+..+++.+.. ..++++..||+++.+...+
T Consensus 171 ~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~ 203 (608)
T 3szr_A 171 YKIKTLIKKYIQRQETISLVVVPSNVDIATTEA 203 (608)
T ss_dssp HHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHH
T ss_pred HHHHHHHHHHHhcCCCCceEEEeccchhccHHH
Confidence 99999999743 3677788888887664443
No 116
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.30 E-value=9.3e-08 Score=110.71 Aligned_cols=65 Identities=11% Similarity=-0.001 Sum_probs=51.3
Q ss_pred HHHHHHHHHcCCce----eCCCCCHHHH--HHHHHHHHhhcC-CccEEEcCCCCChhhccchhhHhhcccccc
Q 010472 351 LELLRAYCASRGYV----ASSGLPDETR--AARIILKDFIDG-KLPHFEMPPGMSHEEVGMEDTQASSLLELH 416 (509)
Q Consensus 351 ~~La~ALa~~p~lL----PtsGLD~~~r--~~~~lLkd~~~g-kl~~~~~pp~~~~~~~~~~~~~~~~~~~~~ 416 (509)
++++++++.+|.++ |++|+|+... .++.+|+.+.+. +..++..+|++...+..++...++. |.++
T Consensus 859 ~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~~-g~~~ 930 (1022)
T 2o8b_B 859 TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRL-GHMA 930 (1022)
T ss_dssp HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEEE-EEEE
T ss_pred HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceeec-CeEE
Confidence 78899999999988 9999999885 578999998764 6677788999888887666665544 4443
No 117
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.26 E-value=4.4e-07 Score=85.99 Aligned_cols=29 Identities=17% Similarity=0.100 Sum_probs=26.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
.+++|++++|+|+||||||||+++|+|..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999999999943
No 118
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.24 E-value=9.1e-08 Score=107.60 Aligned_cols=115 Identities=17% Similarity=0.100 Sum_probs=69.2
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCc---ceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhccCCcc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKR---TGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGVLPID 306 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~---~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~~~~ 306 (509)
|++++|+||||+||||||++|+|+.. .|.. ++. ....++++++ +|+.++. .+++
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~-vpa---------~~~~i~~v~~---i~~~~~~--~d~l-------- 632 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSF-VPA---------EEAHLPLFDG---IYTRIGA--SDDL-------- 632 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC-BSS---------SEEEECCCSE---EEEECCC--------------
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcccCce-eeh---------hccceeeHHH---hhccCCH--HHHH--------
Confidence 89999999999999999999999753 2211 110 0112222222 1222110 0110
Q ss_pred hhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHH--HHcCCce----e---CCCCCHHHH--H
Q 010472 307 RMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAY--CASRGYV----A---SSGLPDETR--A 375 (509)
Q Consensus 307 ~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~AL--a~~p~lL----P---tsGLD~~~r--~ 375 (509)
...+|+++.++ +++++++ +.+|.++ | |+++|.... +
T Consensus 633 -----------------------------~~g~S~~~~e~----~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~ 679 (765)
T 1ewq_A 633 -----------------------------AGGKSTFMVEM----EEVALILKEATENSLVLLDEVGRGTSSLDGVAIATA 679 (765)
T ss_dssp -------------------------------CCSHHHHHH----HHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHH
T ss_pred -----------------------------HhcccHHHHHH----HHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHH
Confidence 11246666666 7888888 8899987 8 888887764 5
Q ss_pred HHHHHHHhhcCCccEEEcCCCCChhhcc
Q 010472 376 ARIILKDFIDGKLPHFEMPPGMSHEEVG 403 (509)
Q Consensus 376 ~~~lLkd~~~gkl~~~~~pp~~~~~~~~ 403 (509)
+...|.+ .| ..++..+|+....+++
T Consensus 680 i~~~L~~--~g-~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 680 VAEALHE--RR-AYTLFATHYFELTALG 704 (765)
T ss_dssp HHHHHHH--HT-CEEEEECCCHHHHTCC
T ss_pred HHHHHHh--CC-CEEEEEeCCHHHHHhh
Confidence 6666655 34 4556667876665554
No 119
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.24 E-value=1e-07 Score=95.82 Aligned_cols=131 Identities=15% Similarity=0.126 Sum_probs=64.9
Q ss_pred cEEEEEecCCCCHhHHHHHHhcC-Cc--ceEEeeCCcccc----c--cee-----eecCeEEEEeCCCccCCCCcccHHH
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQ-KR--TGVTSTPGKTKH----F--QTL-----IISEKLVLCDCPGLVFPSFSISRYD 296 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~-~~--~g~~~~~G~t~~----~--~~~-----~~~~~i~l~d~pg~~~p~~~~~~~e 296 (509)
..++|||+||||||||||+|+|. .. .| +.+.|.... . ... .....+.++|++|+... ..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~-~~----- 91 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDA-IN----- 91 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-------------------------CEEEEC---CCEEEEEEEEC-------------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhh-cC-----
Confidence 45699999999999999999996 33 34 333332110 0 000 01123556666665311 00
Q ss_pred HHHhccCCcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCC-CCCH
Q 010472 297 MVASGVLPIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASS-GLPD 371 (509)
Q Consensus 297 ~v~~g~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----Pts-GLD~ 371 (509)
...... .....+.+. ....+..+|+|++|| +.+++|++ ++ |++ |||+
T Consensus 92 -------~~e~~~---~l~~~l~~~----------~~~~~~~~sgg~rqr----v~~ara~~----ll~ldePt~~~Ld~ 143 (301)
T 2qnr_A 92 -------CRDCFK---TIISYIDEQ----------FERYLHDESGLNRRH----IIDNRVHC----CFYFISPFGHGLKP 143 (301)
T ss_dssp -----------CT---THHHHHHHH----------HHHHHHHHTSSCCTT----CCCCCCCE----EEEEECSSSSSCCH
T ss_pred -------cHHHHH---HHHHHHHHH----------HHHHHHHhCHHhhhh----hhhhhhhh----eeeeecCcccCCCH
Confidence 000000 011111111 112234589999999 77777664 44 876 5999
Q ss_pred HHHHHHHHHHHhhcC-CccEEEcCCCCCh
Q 010472 372 ETRAARIILKDFIDG-KLPHFEMPPGMSH 399 (509)
Q Consensus 372 ~~r~~~~lLkd~~~g-kl~~~~~pp~~~~ 399 (509)
... .+++.+... .++++..-+++..
T Consensus 144 ~~~---~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 144 LDV---AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp HHH---HHHHHHTTTSCEEEEECCGGGSC
T ss_pred HHH---HHHHHHHhcCCEEEEEEeCCCCC
Confidence 864 566666553 5666777777654
No 120
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.21 E-value=3.3e-08 Score=95.91 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=27.7
Q ss_pred CCcEEEEEecCCCCHhHHHHHHh---cCCc--ceEEeeC
Q 010472 229 KNVIVGFVGYPNVGKSSTINALV---GQKR--TGVTSTP 262 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~---G~~~--~g~~~~~ 262 (509)
++++++|+|+||||||||+++|+ |... .|.+.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~ 64 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRE 64 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHH
Confidence 36899999999999999999999 9865 3444443
No 121
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.20 E-value=1.5e-06 Score=89.47 Aligned_cols=38 Identities=13% Similarity=0.201 Sum_probs=33.3
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCc
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGK 264 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~ 264 (509)
+.+|++++|+|+||||||||+|+|+|... .|.+.+.|.
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~ 211 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV 211 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc
Confidence 45789999999999999999999999987 677877764
No 122
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.17 E-value=1.3e-06 Score=89.87 Aligned_cols=53 Identities=19% Similarity=0.063 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCCce----eCCCCCHHHHHHHHHHHHhhcCCccEEEcCCCCChhhccchhhHh
Q 010472 351 LELLRAYCASRGYV----ASSGLPDETRAARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQA 409 (509)
Q Consensus 351 ~~La~ALa~~p~lL----PtsGLD~~~r~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~~ 409 (509)
..|++||.++|+++ |+ |... +..+++....|.+ +++..|..+....|++...+
T Consensus 187 ~~La~aL~~~PdvillDEp~---d~e~--~~~~~~~~~~G~~-vl~t~H~~~~~~~~dRli~l 243 (356)
T 3jvv_A 187 EALRSALREDPDIILVGEMR---DLET--IRLALTAAETGHL-VFGTLHTTSAAKTIDRVVDV 243 (356)
T ss_dssp HHHHHHTTSCCSEEEESCCC---SHHH--HHHHHHHHHTTCE-EEEEESCSSHHHHHHHHHHT
T ss_pred HHHHHHhhhCcCEEecCCCC---CHHH--HHHHHHHHhcCCE-EEEEEccChHHHHHHHHhhh
Confidence 47999999999998 77 4332 3333444445665 77788999988887766655
No 123
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.17 E-value=1.2e-06 Score=86.41 Aligned_cols=146 Identities=13% Similarity=0.030 Sum_probs=76.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHH-HhccCC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMV-ASGVLP 304 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v-~~g~~~ 304 (509)
.+++|++++|+|+||+|||||++.|++....|.. +.|.... ....+.|++..... ......+ ..+..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~-~~g~~~~-----~~~~v~~~~~e~~~-----~~~~~r~~~~g~~- 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPD-LLEVGEL-----PTGPVIYLPAEDPP-----TAIHHRLHALGAH- 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCC-TTCCCCC-----CCCCEEEEESSSCH-----HHHHHHHHHHHTT-
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCC-cCCCccC-----CCccEEEEECCCCH-----HHHHHHHHHHHhh-
Confidence 4778999999999999999999999986555543 2333211 11234444322111 0000011 11110
Q ss_pred cchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCCce----eCC--CCCHH---H-H
Q 010472 305 IDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRGYV----ASS--GLPDE---T-R 374 (509)
Q Consensus 305 ~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~lL----Pts--GLD~~---~-r 374 (509)
. . ......+.+.+ .+.. +....+..+|+|+ +..+++++.+|+++ |++ ++|+. . +
T Consensus 94 ~----~-~~~~~~~~~~l---~l~~-~~~~~~~~ls~g~-------~~~i~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 94 L----S-AEERQAVADGL---LIQP-LIGSLPNIMAPEW-------FDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp S----C-HHHHHHHHHHE---EECC-CTTSCCCTTSHHH-------HHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred c----C-hhhhhhccCce---EEee-cCCCCcccCCHHH-------HHHHHHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 0 0 01112222332 2322 2234566788886 34567888899987 888 88753 2 2
Q ss_pred HHHHHHHHhh-cCCccEEEcCCCCCh
Q 010472 375 AARIILKDFI-DGKLPHFEMPPGMSH 399 (509)
Q Consensus 375 ~~~~lLkd~~-~gkl~~~~~pp~~~~ 399 (509)
.+...|+.+. +.+.+++...|....
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~~ 183 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASKG 183 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC---
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCCc
Confidence 6667777774 334444444444433
No 124
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.16 E-value=6.1e-06 Score=76.40 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCCce--eCCCCCHHHH-HHHHHHHH
Q 010472 351 LELLRAYCASRGYV--ASSGLPDETR-AARIILKD 382 (509)
Q Consensus 351 ~~La~ALa~~p~lL--PtsGLD~~~r-~~~~lLkd 382 (509)
.+++++++.+++++ .++++|.... .+.+.|.+
T Consensus 154 ~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 154 TDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 188 (191)
T ss_dssp HHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 78899999999875 8999999888 77766654
No 125
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.14 E-value=2.3e-06 Score=88.56 Aligned_cols=56 Identities=30% Similarity=0.486 Sum_probs=44.4
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceee--e-cCeEEEEeCCCccC
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLI--I-SEKLVLCDCPGLVF 287 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~--~-~~~i~l~d~pg~~~ 287 (509)
-.|||||.||||||||||+|+|.. +-+..++++|+...... + ...+.++|+||++.
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~ 131 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIID 131 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccC
Confidence 379999999999999999999964 44577888887654322 2 34689999999974
No 126
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.12 E-value=1.4e-06 Score=90.59 Aligned_cols=62 Identities=27% Similarity=0.313 Sum_probs=41.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCccccccee--------------------eecCeEEEEeCCCc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTL--------------------IISEKLVLCDCPGL 285 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~--------------------~~~~~i~l~d~pg~ 285 (509)
.+..|.++||||+||||||||||+|+|...+-+..+|++|...... .....+.++|+||+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 4677999999999999999999999994322223333333322110 11135788999998
Q ss_pred cC
Q 010472 286 VF 287 (509)
Q Consensus 286 ~~ 287 (509)
..
T Consensus 96 ~~ 97 (392)
T 1ni3_A 96 TK 97 (392)
T ss_dssp CC
T ss_pred cc
Confidence 63
No 127
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.12 E-value=2.6e-06 Score=77.57 Aligned_cols=58 Identities=36% Similarity=0.488 Sum_probs=41.6
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccce--eeec-CeEEEEeCCCcc
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQT--LIIS-EKLVLCDCPGLV 286 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~--~~~~-~~i~l~d~pg~~ 286 (509)
+|..++|+|+||||||||+|.|+|....-+...+|+|.+... ..+. ..+.++|+||..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~ 63 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR 63 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcc
Confidence 467899999999999999999999754334456676654422 2222 247889999975
No 128
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.10 E-value=4.1e-08 Score=103.21 Aligned_cols=39 Identities=21% Similarity=0.094 Sum_probs=32.2
Q ss_pred CCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccc
Q 010472 228 PKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTK 266 (509)
Q Consensus 228 ~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~ 266 (509)
.+|.+++|+||||||||||+++|+|... .|.+.+.+.+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI 205 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence 3678999999999999999999999875 57777666543
No 129
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.09 E-value=7.4e-07 Score=80.28 Aligned_cols=73 Identities=8% Similarity=-0.025 Sum_probs=55.4
Q ss_pred ccCCCCCCccccCCCchHHHHH------HHHHHcCCce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhh
Q 010472 333 INLPKPKPYESQSRPPLALELL------RAYCASRGYV----ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEE 401 (509)
Q Consensus 333 ~~~~~~LSgGq~QR~~~~~~La------~ALa~~p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~ 401 (509)
...+..|||||+|| ++|| +||+.+|+++ ||+|||+..+ .+..+|+.+...+..++..+|++....
T Consensus 52 ~~~~~~LSgGe~qr----v~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~ 127 (148)
T 1f2t_B 52 ERPLTFLSGGERIA----LGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKD 127 (148)
T ss_dssp EECGGGSCHHHHHH----HHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGG
T ss_pred cCChhHCCHHHHHH----HHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHH
Confidence 45677899999999 7664 8899999998 9999999999 999999998654445555667764444
Q ss_pred ccchhhHhh
Q 010472 402 VGMEDTQAS 410 (509)
Q Consensus 402 ~~~~~~~~~ 410 (509)
.|+ .+.++
T Consensus 128 ~~d-~ii~l 135 (148)
T 1f2t_B 128 AAD-HVIRI 135 (148)
T ss_dssp GCS-EEEEE
T ss_pred hCC-EEEEE
Confidence 444 44444
No 130
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.08 E-value=3.6e-07 Score=104.31 Aligned_cols=99 Identities=9% Similarity=-0.076 Sum_probs=76.5
Q ss_pred HhCCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCC--ce----eCCCCCHHHH-HHHHHHHHhhcCCccEEE
Q 010472 320 NRVPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRG--YV----ASSGLPDETR-AARIILKDFIDGKLPHFE 392 (509)
Q Consensus 320 ~~l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~--lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~ 392 (509)
+.+..++|......+.+.+|||||+|| ++||+||+.+|. ++ ||+|||+..+ .+..+|+.+++.+.+++.
T Consensus 446 ~~L~~vgL~~l~l~r~~~~LSGGe~QR----v~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tviv 521 (916)
T 3pih_A 446 EFLVDVGLEYLTLSRSATTLSGGESQR----IRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIV 521 (916)
T ss_dssp HHHHTTTCTTCBTTSBGGGCCHHHHHH----HHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEE
T ss_pred HHHHHcCCccccccCCcccCCHHHHHH----HHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 344445665422456778999999999 999999999887 65 9999999999 999999999876677788
Q ss_pred cCCCCChhhccchhhHhh------cccccccCCCCcc
Q 010472 393 MPPGMSHEEVGMEDTQAS------SLLELHESDASDA 423 (509)
Q Consensus 393 ~pp~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 423 (509)
..|+++.... ++.+.++ .+|.++..++.+.
T Consensus 522 VtHd~~~~~~-aD~ii~lgpgag~~~G~iv~~G~~~e 557 (916)
T 3pih_A 522 VEHDEEVIRN-ADHIIDIGPGGGTNGGRVVFQGTVDE 557 (916)
T ss_dssp ECCCHHHHHT-CSEEEEEESSSGGGCSEEEEEECHHH
T ss_pred EeCCHHHHHh-CCEEEEEcCCcccCCCEEEEeechhh
Confidence 8899888777 4555555 7788776555443
No 131
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.05 E-value=7.8e-06 Score=74.78 Aligned_cols=72 Identities=24% Similarity=0.302 Sum_probs=50.7
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-----cCCcEEEEEeCCCCCCHHH-HHHHHHHHHhcCCeEEEeehh
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREID-----KYKRTLLLVNKADLLPFSV-RKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-----~~K~~iLVlNK~DL~p~~~-~~~W~~yf~~~gi~~if~Sa~ 150 (509)
..+..+|++|+|+|+.+|..+. .+..++.++. .+.|++||+||+||.+... .+...++....++.++.+||+
T Consensus 83 ~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (195)
T 1x3s_A 83 SYYRGAQGVILVYDVTRRDTFV--KLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAK 160 (195)
T ss_dssp HHHTTCCEEEEEEETTCHHHHH--THHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HHhccCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCC
Confidence 4678999999999999886432 3445555553 3578999999999965332 223345556678888778875
No 132
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.04 E-value=4.3e-06 Score=86.44 Aligned_cols=37 Identities=22% Similarity=0.147 Sum_probs=30.2
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCCc---ceEEeeCC
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQKR---TGVTSTPG 263 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~~---~g~~~~~G 263 (509)
+.+|.+++|+|+||||||||+++|+|... .|.+.+.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e 172 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 172 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEec
Confidence 46789999999999999999999999865 35554433
No 133
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.04 E-value=1.7e-05 Score=73.56 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=22.5
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKR 255 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~ 255 (509)
..++|+|+||||||||+|.|+|...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~ 30 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEF 30 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCC
Confidence 4789999999999999999999753
No 134
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.00 E-value=1.2e-06 Score=98.98 Aligned_cols=53 Identities=8% Similarity=-0.036 Sum_probs=39.4
Q ss_pred HHHHHHcCCce----eCCCCCHHHH-H-HHHHHHHhhc-CCccEEEcCCCCChhhccchh
Q 010472 354 LRAYCASRGYV----ASSGLPDETR-A-ARIILKDFID-GKLPHFEMPPGMSHEEVGMED 406 (509)
Q Consensus 354 a~ALa~~p~lL----PtsGLD~~~r-~-~~~lLkd~~~-gkl~~~~~pp~~~~~~~~~~~ 406 (509)
+...+.+|.++ |++|+|+... . ++.+|+.+.+ .+..++..+|+....++|++.
T Consensus 680 il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~ 739 (800)
T 1wb9_A 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 (800)
T ss_dssp HHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHS
T ss_pred HHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhh
Confidence 33457788887 9999998877 5 4788988876 466777778888777665544
No 135
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.00 E-value=3.8e-06 Score=84.22 Aligned_cols=57 Identities=35% Similarity=0.476 Sum_probs=40.9
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee---cCeEEEEeCCCcc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII---SEKLVLCDCPGLV 286 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~---~~~i~l~d~pg~~ 286 (509)
+.+++|||+||||||||+|.|+|....-+...+++|++...... ...+.++||||..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~ 67 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH 67 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCC
Confidence 35899999999999999999999864433455666654322111 2357889999975
No 136
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.98 E-value=1e-05 Score=74.26 Aligned_cols=60 Identities=38% Similarity=0.591 Sum_probs=39.0
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCC-cceEEeeCCcccccceeeecCeEEEEeCCCccCCC
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQK-RTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPS 289 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~-~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~ 289 (509)
...++|+|++|||||||+|.|++.. .......+|.|...........+.++|+||+..+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~ 83 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAK 83 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCccc
Confidence 4578999999999999999999875 34455667777665555556679999999976443
No 137
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.97 E-value=6.6e-06 Score=82.69 Aligned_cols=60 Identities=32% Similarity=0.496 Sum_probs=45.6
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee----cCeEEEEeCCCccCCC
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII----SEKLVLCDCPGLVFPS 289 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~----~~~i~l~d~pg~~~p~ 289 (509)
-.+++|+|.+|||||||+|.|+|.....+...+++|++...... ...+.++||||..-+.
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~ 73 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPK 73 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccc
Confidence 35899999999999999999999876556667777765432221 3468899999997554
No 138
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.96 E-value=6.9e-06 Score=82.42 Aligned_cols=58 Identities=38% Similarity=0.610 Sum_probs=43.0
Q ss_pred EEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee---cCeEEEEeCCCccCCC
Q 010472 232 IVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII---SEKLVLCDCPGLVFPS 289 (509)
Q Consensus 232 ~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~---~~~i~l~d~pg~~~p~ 289 (509)
.++|||.+|||||||+|.|+|....-+...+++|++...... ...+.++||||+.-+.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~ 69 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 69 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchh
Confidence 689999999999999999999765444556777765432111 3368899999987543
No 139
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.96 E-value=2.5e-06 Score=80.41 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=26.2
Q ss_pred CCCcEEEEEecCCCCHhHHHHHHhcCCc
Q 010472 228 PKNVIVGFVGYPNVGKSSTINALVGQKR 255 (509)
Q Consensus 228 ~~g~~vglvG~nGaGKSTLln~L~G~~~ 255 (509)
.+|++++|+|+||||||||+++|+|.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5799999999999999999999999875
No 140
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.96 E-value=1e-06 Score=92.47 Aligned_cols=24 Identities=33% Similarity=0.373 Sum_probs=22.1
Q ss_pred EEEEEecCCCCHhHHHHHHhcCCc
Q 010472 232 IVGFVGYPNVGKSSTINALVGQKR 255 (509)
Q Consensus 232 ~vglvG~nGaGKSTLln~L~G~~~ 255 (509)
.++|||+||||||||||+|+|...
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 479999999999999999999875
No 141
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.95 E-value=3e-06 Score=78.95 Aligned_cols=29 Identities=24% Similarity=0.200 Sum_probs=26.0
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCCc
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQKR 255 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~~ 255 (509)
+.+|++++|+||||||||||+++|+|+.+
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45799999999999999999999999864
No 142
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.93 E-value=1.1e-05 Score=79.24 Aligned_cols=55 Identities=36% Similarity=0.582 Sum_probs=42.4
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceee--e-cCeEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLI--I-SEKLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~--~-~~~i~l~d~pg~~ 286 (509)
..++|+|++|||||||+|.|+|... .+..++|.|....... . ...+.++|+||..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~ 61 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIY 61 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCcc
Confidence 4689999999999999999999865 5667888776543322 2 2358899999975
No 143
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.90 E-value=1.1e-05 Score=73.68 Aligned_cols=58 Identities=41% Similarity=0.603 Sum_probs=44.6
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeecCeEEEEeCCCccCC
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFP 288 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p 288 (509)
..++|+|.+|||||||+|.|++.........+|.+...........+.++|+||+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~ 81 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYA 81 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccc
Confidence 4789999999999999999999765444556666665554445567889999997543
No 144
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.88 E-value=3.7e-06 Score=79.42 Aligned_cols=30 Identities=17% Similarity=0.329 Sum_probs=26.6
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR 255 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~ 255 (509)
.+++|++++|+|+||+|||||++.|++...
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999997653
No 145
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.88 E-value=1.6e-05 Score=77.74 Aligned_cols=54 Identities=30% Similarity=0.407 Sum_probs=42.2
Q ss_pred EEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee---cCeEEEEeCCCcc
Q 010472 232 IVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII---SEKLVLCDCPGLV 286 (509)
Q Consensus 232 ~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~---~~~i~l~d~pg~~ 286 (509)
.++|+|.+|||||||+|.|+|.. .-+..++|+|........ ...+.++|+||..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~ 59 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVY 59 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcc
Confidence 58999999999999999999975 456778898865433222 2358899999985
No 146
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.87 E-value=2e-05 Score=73.98 Aligned_cols=27 Identities=15% Similarity=-0.043 Sum_probs=25.3
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVG 252 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G 252 (509)
.+++|++++|+|+||+|||||++.|++
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999999999998
No 147
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.87 E-value=2.5e-06 Score=91.02 Aligned_cols=39 Identities=23% Similarity=0.241 Sum_probs=33.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGK 264 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~ 264 (509)
.+..|.+++|||+||||||||+++|+|++. .|.+.+.|.
T Consensus 289 ~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~ 329 (503)
T 2yhs_A 289 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAG 329 (503)
T ss_dssp CSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred eccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecC
Confidence 467899999999999999999999999876 677777543
No 148
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.86 E-value=2e-05 Score=77.84 Aligned_cols=56 Identities=29% Similarity=0.475 Sum_probs=43.7
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee---cCeEEEEeCCCccC
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII---SEKLVLCDCPGLVF 287 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~---~~~i~l~d~pg~~~ 287 (509)
..++|+|.+|||||||+|.|+|.. .-+..++|+|........ ...+.++|+||..-
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~ 62 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYS 62 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCc
Confidence 478999999999999999999986 456778898865433222 34688999999753
No 149
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.86 E-value=5e-06 Score=79.61 Aligned_cols=30 Identities=23% Similarity=0.217 Sum_probs=25.8
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR 255 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~ 255 (509)
..++|++++|+||||||||||+++|+|..+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 357899999999999999999999999875
No 150
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.84 E-value=1.4e-05 Score=77.54 Aligned_cols=58 Identities=24% Similarity=0.232 Sum_probs=37.8
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcce-EEeeCCcccccceee--e-cCeEEEEeCCCccC
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRTG-VTSTPGKTKHFQTLI--I-SEKLVLCDCPGLVF 287 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~g-~~~~~G~t~~~~~~~--~-~~~i~l~d~pg~~~ 287 (509)
...++|||.+|||||||+|.|+|..... .....|+|....... . ...+.++|+||+..
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~ 82 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFS 82 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCC
Confidence 4689999999999999999999976522 222234554433221 1 34688999999864
No 151
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.84 E-value=1.4e-05 Score=83.23 Aligned_cols=60 Identities=32% Similarity=0.365 Sum_probs=34.0
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCccccccee--------------------eecCeEEEEeCCCcc
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTL--------------------IISEKLVLCDCPGLV 286 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~--------------------~~~~~i~l~d~pg~~ 286 (509)
+..+..++|||.||||||||||+|+|... .+..++++|...... .....+.++|+||+.
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~ 97 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV 97 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence 45678899999999999999999999743 233344444322110 113358999999987
Q ss_pred C
Q 010472 287 F 287 (509)
Q Consensus 287 ~ 287 (509)
.
T Consensus 98 ~ 98 (396)
T 2ohf_A 98 K 98 (396)
T ss_dssp -
T ss_pred c
Confidence 4
No 152
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.83 E-value=4e-05 Score=71.99 Aligned_cols=71 Identities=18% Similarity=0.100 Sum_probs=47.2
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-cCCcEEEEEeCCCCCCHHHHHH----HHHHHHh-------cCCeE
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREID-KYKRTLLLVNKADLLPFSVRKR----WAKYFKD-------HDILF 144 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-~~K~~iLVlNK~DL~p~~~~~~----W~~yf~~-------~gi~~ 144 (509)
+....+|+||+|+|+.+++. .....++..+. .++|+|+|+||+|+.+...... +.+.+.. .+..+
T Consensus 111 ~~~~~~d~vi~v~d~~~~~~---~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 187 (223)
T 4dhe_A 111 QTRPQLCGMILMMDARRPLT---ELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTV 187 (223)
T ss_dssp HHCTTEEEEEEEEETTSCCC---HHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEE
T ss_pred hcCcCcCEEEEEEeCCCCCC---HHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeE
Confidence 33445899999999999764 22233333332 4789999999999998765433 3334433 35567
Q ss_pred EEeehh
Q 010472 145 VFWSAK 150 (509)
Q Consensus 145 if~Sa~ 150 (509)
+++||+
T Consensus 188 ~~~SA~ 193 (223)
T 4dhe_A 188 QLFSAL 193 (223)
T ss_dssp EEEBTT
T ss_pred EEeecC
Confidence 778875
No 153
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.83 E-value=1.6e-05 Score=71.43 Aligned_cols=55 Identities=35% Similarity=0.555 Sum_probs=35.5
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccce--eee-cCeEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQT--LII-SEKLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~--~~~-~~~i~l~d~pg~~ 286 (509)
..++|+|+||||||||+|.|+|.... ...++|.|..... ... ...+.++|+||..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~ 61 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVY 61 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSS-CC-----CCCCCEEEEEETTEEEEEEECCCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCee-ccCCCCcceeeeEEEEEECCcEEEEEECCCcc
Confidence 46899999999999999999996531 1234555544322 111 2357899999975
No 154
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.82 E-value=1.5e-05 Score=81.67 Aligned_cols=29 Identities=17% Similarity=0.100 Sum_probs=27.0
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
.+++|.+++|+|+||+|||||++.|++..
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999999999875
No 155
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.81 E-value=2e-05 Score=77.08 Aligned_cols=55 Identities=40% Similarity=0.547 Sum_probs=42.6
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee---cCeEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII---SEKLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~---~~~i~l~d~pg~~ 286 (509)
..++|+|.+|||||||+|.|+|.... +..++|.|.......+ ...+.++|+||..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~ 63 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTY 63 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEECCeEEEEEECCCcC
Confidence 46899999999999999999997543 5678888865543222 2368899999975
No 156
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.81 E-value=1.9e-05 Score=75.80 Aligned_cols=60 Identities=28% Similarity=0.360 Sum_probs=37.1
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcce-EEeeCCcccccce--eee-cCeEEEEeCCCccCCC
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRTG-VTSTPGKTKHFQT--LII-SEKLVLCDCPGLVFPS 289 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~g-~~~~~G~t~~~~~--~~~-~~~i~l~d~pg~~~p~ 289 (509)
...++|+|++|||||||+|.|+|..... .....+.|..... ... ...+.++|+||+....
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~ 92 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTE 92 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC---
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCC
Confidence 3579999999999999999999976521 1111134443322 122 2468999999987544
No 157
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.81 E-value=1.7e-05 Score=81.61 Aligned_cols=57 Identities=33% Similarity=0.413 Sum_probs=37.4
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccce--eee------------------cCeEEEEeCCCccC
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQT--LII------------------SEKLVLCDCPGLVF 287 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~--~~~------------------~~~i~l~d~pg~~~ 287 (509)
+..++|||.||||||||+|+|+|.. ..+..++++|..... ... ...+.++|+||+.-
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 78 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVA 78 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcc
Confidence 3579999999999999999999864 334455555543221 111 13689999999873
No 158
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.80 E-value=1.3e-05 Score=85.54 Aligned_cols=59 Identities=36% Similarity=0.517 Sum_probs=28.1
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCccccccee--eec-CeEEEEeCCCccC
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTL--IIS-EKLVLCDCPGLVF 287 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~--~~~-~~i~l~d~pg~~~ 287 (509)
.|..++|+|++|||||||+|.|+|....-+..++|+|++.... .+. ..+.++||||+..
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~ 293 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE 293 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCc
Confidence 4667999999999999999999997655566778888765332 222 3588999999854
No 159
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.80 E-value=3.2e-06 Score=96.42 Aligned_cols=98 Identities=9% Similarity=-0.056 Sum_probs=74.7
Q ss_pred CCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcC--Cce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcC
Q 010472 322 VPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASR--GYV----ASSGLPDETR-AARIILKDFIDGKLPHFEMP 394 (509)
Q Consensus 322 l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p--~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~p 394 (509)
+..++|......+.+.+|||||+|| ++||++|+.++ .++ ||+|||+... .+..+|+.+++.+.+++...
T Consensus 488 L~~vGL~~l~ldR~~~tLSGGEkQR----V~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVe 563 (972)
T 2r6f_A 488 LQNVGLDYLTLSRSAGTLSGGEAQR----IRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 563 (972)
T ss_dssp HHHHTCTTSBSSSBGGGCCHHHHHH----HHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEEC
T ss_pred hhhCCCCccccCCccccCCHHHHHH----HHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 3344554322356678899999999 99999999985 665 9999999998 99999999987677788888
Q ss_pred CCCChhhccchhhHhh------cccccccCCCCccc
Q 010472 395 PGMSHEEVGMEDTQAS------SLLELHESDASDAE 424 (509)
Q Consensus 395 p~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 424 (509)
|++..... ++.+.++ ++|.++..++.+..
T Consensus 564 Hdl~~i~~-ADrIi~LgpgaG~~gG~iv~~G~~~e~ 598 (972)
T 2r6f_A 564 HDEDTMLA-ADYLIDIGPGAGIHGGEVVAAGTPEEV 598 (972)
T ss_dssp CCHHHHHS-CSEEEEECSSSGGGCCSEEEEECTTTT
T ss_pred cCHHHHHh-CCEEEEeCCCccCCCCEEEEecCHHHH
Confidence 88877665 4555555 78888775555443
No 160
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.79 E-value=1.9e-05 Score=74.28 Aligned_cols=60 Identities=35% Similarity=0.563 Sum_probs=44.6
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCcccccceeeec----CeEEEEeCCCccCCC
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHFQTLIIS----EKLVLCDCPGLVFPS 289 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~~~~~~~----~~i~l~d~pg~~~p~ 289 (509)
...++|+|.+|||||||+|.|+|... .-+...+|+|......... ..+.++|+||+..+.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 93 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAE 93 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCccc
Confidence 45789999999999999999999763 3444566777655443333 568999999976544
No 161
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.79 E-value=5.7e-06 Score=76.55 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=23.9
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKR 255 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~ 255 (509)
|.+++|+||||||||||+++|+|+..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46799999999999999999999876
No 162
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.79 E-value=1.8e-05 Score=78.20 Aligned_cols=55 Identities=29% Similarity=0.535 Sum_probs=41.2
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee--cCeEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII--SEKLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~--~~~i~l~d~pg~~ 286 (509)
..++|+|.||||||||+|.|+|... -+..++|+|.......+ ...+.++|+||..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~-~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~ 60 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERKSGLVKKNKDLEIQDLPGIY 60 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCC-CCCSSSCCCCSCEEEECTTCTTEEEEECCCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCCcEEEEEEEEecCCeEEEEECCCcC
Confidence 4789999999999999999999752 24456787765433222 3468899999975
No 163
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.78 E-value=4.4e-06 Score=84.93 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=32.6
Q ss_pred CCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcc
Q 010472 228 PKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKT 265 (509)
Q Consensus 228 ~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t 265 (509)
.+|++++|+|+||||||||+++|+|... .|.+.+.|..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D 166 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASD 166 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeec
Confidence 5799999999999999999999999876 5677766654
No 164
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.77 E-value=7.8e-06 Score=76.66 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=23.4
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCc
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKR 255 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~ 255 (509)
+|.+++|+||||||||||+++|+|...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 578999999999999999999999764
No 165
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.75 E-value=3.8e-05 Score=69.94 Aligned_cols=56 Identities=34% Similarity=0.500 Sum_probs=39.7
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCccccccee--ee-cCeEEEEeCCCcc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTL--II-SEKLVLCDCPGLV 286 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~--~~-~~~i~l~d~pg~~ 286 (509)
...++|+|++|||||||+|.|+|... -....+|.+...... .. ...+.++|+||..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~ 65 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVY 65 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCeeccceEEEEEeCCcEEEEEECCCcC
Confidence 35799999999999999999998642 334556666443221 12 2357899999975
No 166
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.74 E-value=7.3e-06 Score=78.37 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=20.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHh-cCCc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALV-GQKR 255 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~-G~~~ 255 (509)
.+.+|++++|+||||||||||+++|+ |+.+
T Consensus 23 ~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 23 LKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CEECCCEEEEECSCC----CHHHHHHC----
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 36789999999999999999999999 9864
No 167
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.73 E-value=7.8e-06 Score=87.13 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=34.7
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCccc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTK 266 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~ 266 (509)
.+++ ++++|+|+||||||||+++|+|+.. .|.+.+.|...
T Consensus 26 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 26 DFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTE 67 (483)
T ss_dssp ECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTS
T ss_pred EEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence 4667 9999999999999999999999876 68888888654
No 168
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.71 E-value=5.8e-05 Score=68.78 Aligned_cols=77 Identities=14% Similarity=0.125 Sum_probs=48.9
Q ss_pred HHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHHH----HHHHHHHhc-CCeEEE
Q 010472 72 WRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRK----RWAKYFKDH-DILFVF 146 (509)
Q Consensus 72 wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~~----~W~~yf~~~-gi~~if 146 (509)
|+...+....+|+|+.|+|+.++.......+..++.. .+.|+++|+||+||.+...+. ...+++... ++.++.
T Consensus 95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
T 3pqc_A 95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS--LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIP 172 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEE
T ss_pred HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH--cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEE
Confidence 3333444455699999999988764322233334443 378999999999998765443 333444443 356777
Q ss_pred eehh
Q 010472 147 WSAK 150 (509)
Q Consensus 147 ~Sa~ 150 (509)
+||+
T Consensus 173 ~Sa~ 176 (195)
T 3pqc_A 173 TSSV 176 (195)
T ss_dssp CCTT
T ss_pred EecC
Confidence 8875
No 169
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.70 E-value=2.6e-05 Score=82.15 Aligned_cols=56 Identities=34% Similarity=0.370 Sum_probs=33.6
Q ss_pred EEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceee--e-cCeEEEEeCCCccC
Q 010472 232 IVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLI--I-SEKLVLCDCPGLVF 287 (509)
Q Consensus 232 ~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~--~-~~~i~l~d~pg~~~ 287 (509)
.++|||.||||||||+|.|+|....-+...+|+|++..... + ...+.++||+|+..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~ 61 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFD 61 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccc
Confidence 58999999999999999999976555667889887654322 2 34688999999863
No 170
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.69 E-value=0.00035 Score=66.12 Aligned_cols=78 Identities=13% Similarity=0.102 Sum_probs=51.2
Q ss_pred HHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhc---CCcEEEEEeCCCCCCHHHH-----HHHHHHHHhcC--C
Q 010472 73 RQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDK---YKRTLLLVNKADLLPFSVR-----KRWAKYFKDHD--I 142 (509)
Q Consensus 73 rql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~---~K~~iLVlNK~DL~p~~~~-----~~W~~yf~~~g--i 142 (509)
+.+......+|++|+|+|+.++..+.......++..+.. +.|+|||+||+||.+.... ....++....+ +
T Consensus 100 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (228)
T 2qu8_A 100 TTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPI 179 (228)
T ss_dssp HHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCE
T ss_pred HHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCc
Confidence 334445788899999999999876542323344544433 7899999999999875322 22334444555 6
Q ss_pred eEEEeehh
Q 010472 143 LFVFWSAK 150 (509)
Q Consensus 143 ~~if~Sa~ 150 (509)
.++.+||+
T Consensus 180 ~~~~~SA~ 187 (228)
T 2qu8_A 180 KFSSFSTL 187 (228)
T ss_dssp EEEECCTT
T ss_pred eEEEEecc
Confidence 77778875
No 171
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.69 E-value=6.2e-06 Score=94.34 Aligned_cols=96 Identities=11% Similarity=-0.062 Sum_probs=73.1
Q ss_pred CCccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcC--Cce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcC
Q 010472 322 VPRHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASR--GYV----ASSGLPDETR-AARIILKDFIDGKLPHFEMP 394 (509)
Q Consensus 322 l~~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p--~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~p 394 (509)
+..++|......+.+.+|||||+|| ++||++|+.++ .++ ||+|||+... .+..+|+.+++.+.+++...
T Consensus 505 L~~vGL~~l~l~r~~~tLSGGEkQR----V~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVe 580 (993)
T 2ygr_A 505 LLDVGLEYLSLSRAAATLSGGEAQR----IRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVE 580 (993)
T ss_dssp HHHHTGGGSCTTCBGGGCCHHHHHH----HHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HhhCCCCccccCCCcccCCHHHHHH----HHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEEC
Confidence 3344554322356678899999999 99999999985 565 9999999999 99999999987667778888
Q ss_pred CCCChhhccchhhHhh------cccccccCCCCc
Q 010472 395 PGMSHEEVGMEDTQAS------SLLELHESDASD 422 (509)
Q Consensus 395 p~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 422 (509)
|++..... ++.+.++ ++|.++..++.+
T Consensus 581 Hdl~~i~~-ADrIi~Lgp~aG~~gG~iv~~G~~~ 613 (993)
T 2ygr_A 581 HDEDTIEH-ADWIVDIGPGAGEHGGRIVHSGPYD 613 (993)
T ss_dssp CCHHHHHT-CSEEEEECSSSGGGCCSCCEEECHH
T ss_pred CCHHHHHh-CCEEEEecCccccCCCEEEEeeCHH
Confidence 88877665 4555555 688887755443
No 172
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.67 E-value=5.8e-05 Score=70.14 Aligned_cols=72 Identities=22% Similarity=0.263 Sum_probs=47.4
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh----cCCcEEEEEeCCCCCCHHHH-HHHHHHHHhcCCeEEEeehh
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREID----KYKRTLLLVNKADLLPFSVR-KRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~----~~K~~iLVlNK~DL~p~~~~-~~W~~yf~~~gi~~if~Sa~ 150 (509)
..+..+|++|+|+|+.++..+. .+..++..+. .+.|+|||+||+||.+.... +...++....++.++.+||+
T Consensus 88 ~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (213)
T 3cph_A 88 AYYRGAMGIILVYDVTDERTFT--NIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAK 164 (213)
T ss_dssp HHHTTCSEEEEEEETTCHHHHH--THHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTT
T ss_pred HHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 4678999999999999876432 3344444332 26899999999999543221 12223334457778888875
No 173
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.67 E-value=4e-05 Score=68.55 Aligned_cols=56 Identities=25% Similarity=0.316 Sum_probs=34.2
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeecC---eEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISE---KLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~~---~i~l~d~pg~~ 286 (509)
..++|+|++|||||||+|.|++..........|.+.......+.. .+.++|+||..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 63 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAE 63 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC---
T ss_pred EEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCC
Confidence 468999999999999999999876533333455443222223322 46789999975
No 174
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.66 E-value=2.8e-05 Score=69.73 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=40.1
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCc-ce--EEeeCCcccccceeeecCeEEEEeCCCcc
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKR-TG--VTSTPGKTKHFQTLIISEKLVLCDCPGLV 286 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~-~g--~~~~~G~t~~~~~~~~~~~i~l~d~pg~~ 286 (509)
+|+.++|+|+||+|||||+++|++... .| .+.+++.............+.++|.++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLTDAAFEAEYLAVDQVEKL 95 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCCGGGGGCSEEEEESTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHHHHHhCCCEEEEeCcccc
Confidence 688999999999999999999999764 34 55555543221111123457778887664
No 175
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.66 E-value=2.1e-05 Score=73.09 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=26.0
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCCc
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQKR 255 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~~ 255 (509)
+.+|.+++|+|+||||||||+++|++...
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 46789999999999999999999999873
No 176
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.66 E-value=4e-05 Score=69.63 Aligned_cols=54 Identities=33% Similarity=0.489 Sum_probs=39.4
Q ss_pred EEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeecCeEEEEeCCCccC
Q 010472 232 IVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVF 287 (509)
Q Consensus 232 ~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~ 287 (509)
.++|+|.+|||||||+|.|++... .....+|.+......... .+.++|+||+.+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~ 56 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKIIEIEWK-NHKIIDMPGFGF 56 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTSCEEEEET-TEEEEECCCBSC
T ss_pred EEEEECCCCCCHHHHHHHHhCcCC-ccCCCCCccceeEEEecC-CEEEEECCCccc
Confidence 578999999999999999998653 223345666554444433 688999999753
No 177
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.65 E-value=4.4e-05 Score=75.06 Aligned_cols=56 Identities=23% Similarity=0.268 Sum_probs=34.1
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcceEEe-------eCCcccccceeee--cC---eEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRTGVTS-------TPGKTKHFQTLII--SE---KLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~g~~~-------~~G~t~~~~~~~~--~~---~i~l~d~pg~~ 286 (509)
..++|+|.+|+|||||+|.|++........ .++.+.......+ .. .+.++|+||+-
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~ 76 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFG 76 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcc
Confidence 468999999999999999999875421111 2222222222222 11 68899999974
No 178
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.65 E-value=1.8e-05 Score=72.85 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=24.8
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCc
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKR 255 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~ 255 (509)
.|.+++|+||||||||||+++|++...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 578999999999999999999999764
No 179
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.64 E-value=1.9e-06 Score=87.47 Aligned_cols=110 Identities=14% Similarity=0.148 Sum_probs=52.7
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCccc----ccce---eeecCeEEEEeCCCccCCCCcccHHHHHHhccC
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTK----HFQT---LIISEKLVLCDCPGLVFPSFSISRYDMVASGVL 303 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~----~~~~---~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~~ 303 (509)
..++|+||||+|||||+++|+|..........|... .... ......+.++|+...+++ +..+.++..+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~----~~~e~L~~~~~ 127 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK----AVEELLYSAIE 127 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCH----HHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCH----HHHHHHHHHHH
Confidence 578999999999999999999976321112222111 0000 011346888998665543 33333322110
Q ss_pred --CcchhhhHHHHHHHHHHhCCccchhhHhhccCCCCCCccccCC
Q 010472 304 --PIDRMTEHRQAVQVVANRVPRHVIENVCKINLPKPKPYESQSR 346 (509)
Q Consensus 304 --~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~~~~~LSgGq~QR 346 (509)
....+.........+...++.+.+.. ....+..||+|++||
T Consensus 128 ~~~~~i~~~~~~~~~~i~~~l~~~~li~--at~~~~~Ls~~l~sR 170 (334)
T 1in4_A 128 DFQIDIMIGKGPSAKSIRIDIQPFTLVG--ATTRSGLLSSPLRSR 170 (334)
T ss_dssp TSCCCC---------------CCCEEEE--EESCGGGSCHHHHTT
T ss_pred hcccceeeccCcccccccccCCCeEEEE--ecCCcccCCHHHHHh
Confidence 00000000011122333344444422 234566799999998
No 180
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.64 E-value=4.5e-05 Score=83.25 Aligned_cols=58 Identities=31% Similarity=0.338 Sum_probs=40.1
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccce-e---------eecCeEEEEeCCCccCCC
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQT-L---------IISEKLVLCDCPGLVFPS 289 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~-~---------~~~~~i~l~d~pg~~~p~ 289 (509)
..+++|+|+||||||||||.|+|.... +.++|++.+... . .....+.++||||+..+.
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~~~--~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~ 105 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKKKG--FSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE 105 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSSC--SCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCCCc--cccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCccc
Confidence 367899999999999999999997531 144444422211 1 123468999999998543
No 181
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.61 E-value=5e-05 Score=74.48 Aligned_cols=56 Identities=25% Similarity=0.410 Sum_probs=40.5
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee---cCeEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII---SEKLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~---~~~i~l~d~pg~~ 286 (509)
..++|+|.+|+|||||+|.|+|.....+...+++|........ ...+.++|+||+.
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~ 98 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLI 98 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSE
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCC
Confidence 5789999999999999999998764334445666544332222 2358899999975
No 182
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.60 E-value=5.3e-05 Score=73.98 Aligned_cols=58 Identities=29% Similarity=0.389 Sum_probs=41.0
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceee--e-cCeEEEEeCCCccC
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLI--I-SEKLVLCDCPGLVF 287 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~--~-~~~i~l~d~pg~~~ 287 (509)
...++|+|.+|||||||+|.|+|........++++|....... . ...+.++|+||...
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~ 96 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVE 96 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCC
Confidence 3579999999999999999999976433444566554433221 2 23689999999863
No 183
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.59 E-value=4.5e-05 Score=79.51 Aligned_cols=35 Identities=34% Similarity=0.420 Sum_probs=20.0
Q ss_pred EEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccc
Q 010472 232 IVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKH 267 (509)
Q Consensus 232 ~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~ 267 (509)
.++|||.||||||||+|.|+|.. .-+..++++|..
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~ 36 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIE 36 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC---------------
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccC
Confidence 58999999999999999999976 444556666653
No 184
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.59 E-value=7.1e-05 Score=81.97 Aligned_cols=79 Identities=22% Similarity=0.121 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCC---HHHHHHHHHHHHhcCCeEEE
Q 010472 70 DMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLP---FSVRKRWAKYFKDHDILFVF 146 (509)
Q Consensus 70 e~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p---~~~~~~W~~yf~~~gi~~if 146 (509)
++.....+.+..+|.+|+|+||.++... ..++.+......+.|+|+|+||+||.. ....+.|.+.|.-....+++
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~--qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~ 160 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEA--QTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVR 160 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCT--HHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCEE
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCH--HHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEEE
Confidence 4566677889999999999999987742 233333333445889999999999986 33445666655222223677
Q ss_pred eehh
Q 010472 147 WSAK 150 (509)
Q Consensus 147 ~Sa~ 150 (509)
.||+
T Consensus 161 vSAk 164 (599)
T 3cb4_D 161 CSAK 164 (599)
T ss_dssp ECTT
T ss_pred eecc
Confidence 7875
No 185
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.59 E-value=5.3e-05 Score=66.76 Aligned_cols=55 Identities=36% Similarity=0.542 Sum_probs=33.4
Q ss_pred EEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceee--e-cCeEEEEeCCCcc
Q 010472 232 IVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLI--I-SEKLVLCDCPGLV 286 (509)
Q Consensus 232 ~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~--~-~~~i~l~d~pg~~ 286 (509)
.++|+|++|||||||+|.|++....-....++.+....... . ...+.++|+||..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 60 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLW 60 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCC
Confidence 57899999999999999999875433334455554332221 1 2357899999976
No 186
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.58 E-value=9.1e-06 Score=92.10 Aligned_cols=96 Identities=13% Similarity=-0.024 Sum_probs=74.2
Q ss_pred ccchhhHhhccCCCCCCccccCCCchHHHHHHHHHHcCC--ce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCC
Q 010472 324 RHVIENVCKINLPKPKPYESQSRPPLALELLRAYCASRG--YV----ASSGLPDETR-AARIILKDFIDGKLPHFEMPPG 396 (509)
Q Consensus 324 ~~~L~~~~~~~~~~~LSgGq~QR~~~~~~La~ALa~~p~--lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~ 396 (509)
.++|......+.+..|||||+|| ++||++|+.+|. ++ ||+|||+... .+..+|+.+++.+.+++...|+
T Consensus 365 ~vGL~~l~l~r~~~tLSGGe~QR----V~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHd 440 (842)
T 2vf7_A 365 HLGLGYLGLDRSTPTLSPGELQR----LRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHD 440 (842)
T ss_dssp HTTCTTSBTTCBGGGSCHHHHHH----HHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred hCCCCcCCccCCcCcCCHHHHHH----HHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 44554322356678899999999 999999999984 54 9999999999 9999999998877778888888
Q ss_pred CChhhccchhhHhh------cccccccCCCCccc
Q 010472 397 MSHEEVGMEDTQAS------SLLELHESDASDAE 424 (509)
Q Consensus 397 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 424 (509)
+..... ++.+.++ ++|.++..++.+..
T Consensus 441 l~~l~~-aD~ii~lgpgaG~~~G~iv~~g~~~~~ 473 (842)
T 2vf7_A 441 LDVIRR-ADWLVDVGPEAGEKGGEILYSGPPEGL 473 (842)
T ss_dssp HHHHTT-CSEEEEECSSSGGGCCSEEEEECGGGG
T ss_pred HHHHHh-CCEEEEeCCCcccCCCEEEEecCHHHH
Confidence 876655 5556666 78888776554443
No 187
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.57 E-value=6.4e-05 Score=68.82 Aligned_cols=72 Identities=17% Similarity=0.128 Sum_probs=47.9
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-------cCCcEEEEEeCCCCCCHHHHHHHHHHHH-----hcCCeE
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREID-------KYKRTLLLVNKADLLPFSVRKRWAKYFK-----DHDILF 144 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-------~~K~~iLVlNK~DL~p~~~~~~W~~yf~-----~~gi~~ 144 (509)
..+..+|++|+|+|+.++..+. .+..++..+. .+.|++||+||+||......+.+.+++. ..++.+
T Consensus 86 ~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (190)
T 2h57_A 86 HYYKEGQAIIFVIDSSDRLRMV--VAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHI 163 (190)
T ss_dssp GGGGGCSEEEEEEETTCHHHHH--HHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEE
T ss_pred HHHhcCCEEEEEEECCCHHHHH--HHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEE
Confidence 3678999999999999875322 2333333331 4689999999999986433344445543 235667
Q ss_pred EEeehh
Q 010472 145 VFWSAK 150 (509)
Q Consensus 145 if~Sa~ 150 (509)
+.+||+
T Consensus 164 ~~~Sa~ 169 (190)
T 2h57_A 164 CASDAI 169 (190)
T ss_dssp EECBTT
T ss_pred EEccCC
Confidence 778875
No 188
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.56 E-value=0.00011 Score=67.26 Aligned_cols=71 Identities=17% Similarity=0.174 Sum_probs=47.7
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh------------cCCcEEEEEeCCCCCCHHHHHHHHHHH------Hh
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLEAYAREID------------KYKRTLLLVNKADLLPFSVRKRWAKYF------KD 139 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~------------~~K~~iLVlNK~DL~p~~~~~~W~~yf------~~ 139 (509)
.+..+|++|+|+|+.++..+. .+..++..+. .+.|+|||+||+||......+.+.+.+ ..
T Consensus 83 ~~~~~d~ii~v~D~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 160 (199)
T 4bas_A 83 YYDNIDAVIFVVDSSDHLRLC--VVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGD 160 (199)
T ss_dssp GCTTCSEEEEEEETTCGGGHH--HHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTT
T ss_pred HHhcCCEEEEEEECCcHHHHH--HHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccC
Confidence 578999999999999986432 3333443331 178999999999998763333333332 44
Q ss_pred cCCeEEEeehh
Q 010472 140 HDILFVFWSAK 150 (509)
Q Consensus 140 ~gi~~if~Sa~ 150 (509)
.++.++.+||+
T Consensus 161 ~~~~~~~~Sa~ 171 (199)
T 4bas_A 161 HPFVIFASNGL 171 (199)
T ss_dssp SCEEEEECBTT
T ss_pred CeeEEEEeeCC
Confidence 56677778875
No 189
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.56 E-value=9.4e-05 Score=74.20 Aligned_cols=79 Identities=25% Similarity=0.244 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-cCCcEEEEEeCCCCC-CHHHHHHHHHHHHhc-C--CeE
Q 010472 70 DMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREID-KYKRTLLLVNKADLL-PFSVRKRWAKYFKDH-D--ILF 144 (509)
Q Consensus 70 e~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-~~K~~iLVlNK~DL~-p~~~~~~W~~yf~~~-g--i~~ 144 (509)
.+.+..+..+..+|+||+|+|+.++.... +...++..+. .+.|+|||+||+|++ +......+.+.+.+. + ..+
T Consensus 81 ~~~~~~~~~l~~aD~il~VvD~~~~~~~~--~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i 158 (308)
T 3iev_A 81 SMVEIAKQSLEEADVILFMIDATEGWRPR--DEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEI 158 (308)
T ss_dssp HHHHHHHHHHHHCSEEEEEEETTTBSCHH--HHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCE
T ss_pred HHHHHHHHHhhcCCEEEEEEeCCCCCCch--hHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeE
Confidence 45666778899999999999999886432 2332244443 368999999999999 666666666666543 3 556
Q ss_pred EEeehh
Q 010472 145 VFWSAK 150 (509)
Q Consensus 145 if~Sa~ 150 (509)
+.+||+
T Consensus 159 ~~vSA~ 164 (308)
T 3iev_A 159 VPISAL 164 (308)
T ss_dssp EECBTT
T ss_pred EEEeCC
Confidence 778875
No 190
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.56 E-value=0.00014 Score=65.05 Aligned_cols=72 Identities=22% Similarity=0.239 Sum_probs=50.8
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh----cCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEeehh
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREID----KYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~----~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~Sa~ 150 (509)
..+..+|++|+|+|+.++..+. .+..++..+. .+.|++||+||+||..... .+...++....++.++.+||+
T Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (179)
T 1z0f_A 83 SYYRGAAGALMVYDITRRSTYN--HLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAK 160 (179)
T ss_dssp HHHHTCSEEEEEEETTCHHHHH--THHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HHhccCCEEEEEEeCcCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 4688999999999999886532 3444443332 4688999999999965321 234455666778888888885
No 191
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.55 E-value=6.2e-05 Score=73.01 Aligned_cols=60 Identities=18% Similarity=0.191 Sum_probs=39.3
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCC-cccccce--eee-cCeEEEEeCCCccCCC
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPG-KTKHFQT--LII-SEKLVLCDCPGLVFPS 289 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G-~t~~~~~--~~~-~~~i~l~d~pg~~~p~ 289 (509)
...++|+|.+|||||||+|.|+|.........++ +|..... ... ...+.++|+||+....
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~ 85 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWK 85 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCC
Confidence 4579999999999999999999865321111122 3433221 111 2468999999987543
No 192
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.55 E-value=3e-05 Score=77.90 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=29.3
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCCc----ceEEee
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQKR----TGVTST 261 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~~----~g~~~~ 261 (509)
...|+++||+|+||||||||+++|+|+.. .|.+.+
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~v 115 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVEL 115 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEE
Confidence 35789999999999999999999999743 455555
No 193
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.55 E-value=2.6e-05 Score=72.91 Aligned_cols=34 Identities=15% Similarity=0.250 Sum_probs=27.8
Q ss_pred CCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCC
Q 010472 228 PKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPG 263 (509)
Q Consensus 228 ~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G 263 (509)
.+|.+++|+|+||||||||+++|++.. |.+.+.|
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~--g~~~i~~ 60 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET--GLEFAEA 60 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH--CCEEEEG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh--CCeEEcc
Confidence 468999999999999999999999875 4454444
No 194
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.55 E-value=0.00014 Score=66.29 Aligned_cols=73 Identities=18% Similarity=0.069 Sum_probs=51.1
Q ss_pred HHhhCCEEEEEeeCCCCCCCCCh----hHHHHHHHHh---cCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCC-eEEEeeh
Q 010472 78 VLERSDLIVMVVDARDPLFYRCP----DLEAYAREID---KYKRTLLLVNKADLLPFSVRKRWAKYFKDHDI-LFVFWSA 149 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~----~le~~v~~~~---~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~gi-~~if~Sa 149 (509)
.+..+|++|+|+|+.+|....+. .+..++.++. .+.|+|||+||+||.+....+...+++...+. .++.+||
T Consensus 94 ~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (198)
T 3t1o_A 94 ILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVLEAVA 173 (198)
T ss_dssp HTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEEECBG
T ss_pred HHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEEEEec
Confidence 78899999999999966433222 2223333321 47899999999999765444455666777787 7888888
Q ss_pred h
Q 010472 150 K 150 (509)
Q Consensus 150 ~ 150 (509)
+
T Consensus 174 ~ 174 (198)
T 3t1o_A 174 T 174 (198)
T ss_dssp G
T ss_pred C
Confidence 5
No 195
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.55 E-value=3.2e-05 Score=81.46 Aligned_cols=56 Identities=34% Similarity=0.482 Sum_probs=30.7
Q ss_pred EEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee---cCeEEEEeCCCccC
Q 010472 232 IVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII---SEKLVLCDCPGLVF 287 (509)
Q Consensus 232 ~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~---~~~i~l~d~pg~~~ 287 (509)
.++|||.+|||||||+|.|+|....-+...+|+|++...... ...+.++||+|...
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~ 63 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDI 63 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCC
Confidence 689999999999999999999755556678888876543222 34688999999863
No 196
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.54 E-value=0.0002 Score=65.48 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=45.6
Q ss_pred hhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHH----HHHHHHHHh-cCCeEEEeehh
Q 010472 80 ERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVR----KRWAKYFKD-HDILFVFWSAK 150 (509)
Q Consensus 80 e~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~----~~W~~yf~~-~gi~~if~Sa~ 150 (509)
..+|++++|+|+.++.......+..++.. .+.|+++|+||+||.+.... +.+.+.|.. .++.++.+||+
T Consensus 104 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 177 (195)
T 1svi_A 104 EELKAVVQIVDLRHAPSNDDVQMYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSE 177 (195)
T ss_dssp TTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTT
T ss_pred hcCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEcc
Confidence 34499999999999875332223344432 47899999999999986543 334444432 35667778875
No 197
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.54 E-value=9.4e-05 Score=75.52 Aligned_cols=79 Identities=20% Similarity=0.202 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCCCCC-hhHHHHHHHHh------cCCcEEEEEeCCCCCCHHH-HHHHHHHHHhcCC
Q 010472 71 MWRQLWRVLERSDLIVMVVDARDPLFYRC-PDLEAYAREID------KYKRTLLLVNKADLLPFSV-RKRWAKYFKDHDI 142 (509)
Q Consensus 71 ~wrql~rvie~sDvVl~VvDaR~Pl~~~~-~~le~~v~~~~------~~K~~iLVlNK~DL~p~~~-~~~W~~yf~~~gi 142 (509)
++.+..+-++++|++|+|+|+.++....+ .+++.+..++. ..+|+|||+||+||..... .+.+.+.+... +
T Consensus 226 l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~-~ 304 (342)
T 1lnz_A 226 LGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDD-Y 304 (342)
T ss_dssp THHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSC-C
T ss_pred hHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcC-C
Confidence 45666777899999999999955321001 23444444442 3789999999999997642 34454444321 4
Q ss_pred eEEEeehh
Q 010472 143 LFVFWSAK 150 (509)
Q Consensus 143 ~~if~Sa~ 150 (509)
.++.+||+
T Consensus 305 ~v~~iSA~ 312 (342)
T 1lnz_A 305 PVFPISAV 312 (342)
T ss_dssp CBCCCSSC
T ss_pred CEEEEECC
Confidence 55667774
No 198
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.53 E-value=4.2e-05 Score=69.20 Aligned_cols=71 Identities=15% Similarity=0.055 Sum_probs=45.5
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH-----hcCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEeehh
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLEAYAREI-----DKYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~-----~~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~Sa~ 150 (509)
.+..+|++++|+|+.++..+. .+..+..++ ..+.|++||+||+||..... .+.-.++....+..++.+||+
T Consensus 74 ~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 151 (181)
T 3t5g_A 74 YSIDINGYILVYSVTSIKSFE--VIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAK 151 (181)
T ss_dssp GTTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HHhcCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecC
Confidence 567899999999999876432 333333333 23689999999999964321 122334445567788888885
No 199
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.53 E-value=9.9e-05 Score=66.95 Aligned_cols=72 Identities=13% Similarity=0.135 Sum_probs=50.0
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-----cCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEeeh
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREID-----KYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFWSA 149 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-----~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~Sa 149 (509)
..+..+|++|+|+|+.+|..+. .+..++..+. .+.|++||+||+||.+... .+...++....++.++.+||
T Consensus 89 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 166 (195)
T 3bc1_A 89 AFFRDAMGFLLLFDLTNEQSFL--NVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSA 166 (195)
T ss_dssp HTTTTCSEEEEEEETTCHHHHH--THHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred HHHcCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEEC
Confidence 4688999999999999887543 3344544442 4789999999999975311 12333444556778888887
Q ss_pred h
Q 010472 150 K 150 (509)
Q Consensus 150 ~ 150 (509)
+
T Consensus 167 ~ 167 (195)
T 3bc1_A 167 A 167 (195)
T ss_dssp T
T ss_pred C
Confidence 5
No 200
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.53 E-value=0.00017 Score=67.35 Aligned_cols=73 Identities=14% Similarity=0.138 Sum_probs=50.1
Q ss_pred HHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-----cCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEee
Q 010472 76 WRVLERSDLIVMVVDARDPLFYRCPDLEAYAREID-----KYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFWS 148 (509)
Q Consensus 76 ~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-----~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~S 148 (509)
...+..+|++|+|+|+.++..+ ..+..++..+. .+.|+|||+||+||.+... .....++....++.++.+|
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~--~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 179 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSF--LNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETS 179 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHH--HHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEB
T ss_pred HHHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEE
Confidence 3578999999999999987642 23445555443 4678999999999975311 1223334455678888888
Q ss_pred hh
Q 010472 149 AK 150 (509)
Q Consensus 149 a~ 150 (509)
|+
T Consensus 180 a~ 181 (217)
T 2f7s_A 180 AA 181 (217)
T ss_dssp TT
T ss_pred CC
Confidence 85
No 201
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=97.51 E-value=4.8e-05 Score=81.24 Aligned_cols=58 Identities=33% Similarity=0.523 Sum_probs=45.4
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCccccccee--ee-cCeEEEEeCCCcc
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTL--II-SEKLVLCDCPGLV 286 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~--~~-~~~i~l~d~pg~~ 286 (509)
.|..++|+|+||||||||+|.|+|....-+..++|+|++.... .+ ...+.++|+||+.
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~ 302 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVR 302 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCC
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCcc
Confidence 4578999999999999999999997655566788888765432 22 2358899999986
No 202
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.51 E-value=0.00024 Score=73.83 Aligned_cols=79 Identities=16% Similarity=0.145 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh--cCCcEEEEEeCCCCCCHHHHHHHHHHHH----hc---
Q 010472 70 DMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREID--KYKRTLLLVNKADLLPFSVRKRWAKYFK----DH--- 140 (509)
Q Consensus 70 e~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~--~~K~~iLVlNK~DL~p~~~~~~W~~yf~----~~--- 140 (509)
++.+...+.+..+|++|+|+||.++.. .+...+++..+. ..+++|+|+||+||++.+....+.+.+. ..
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~~~~--~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~ 164 (403)
T 3sjy_A 87 VLMATMLSGAALMDGAILVVAANEPFP--QPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAE 164 (403)
T ss_dssp GGHHHHHHHHTTCSEEEEEEETTSCSS--CHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTT
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCC--cHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCC
Confidence 456677778999999999999999863 234434433322 3468999999999999875544443332 21
Q ss_pred CCeEEEeehh
Q 010472 141 DILFVFWSAK 150 (509)
Q Consensus 141 gi~~if~Sa~ 150 (509)
++.++.+||+
T Consensus 165 ~~~ii~vSA~ 174 (403)
T 3sjy_A 165 NVPIIPVSAL 174 (403)
T ss_dssp TCCEEECBTT
T ss_pred CCEEEEEECC
Confidence 4567778875
No 203
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.50 E-value=0.00017 Score=63.68 Aligned_cols=76 Identities=18% Similarity=0.187 Sum_probs=48.8
Q ss_pred HHHHH-HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-----cCCcEEEEEeCCCCCCHHHHHHHHHHHHh-----cC
Q 010472 73 RQLWR-VLERSDLIVMVVDARDPLFYRCPDLEAYAREID-----KYKRTLLLVNKADLLPFSVRKRWAKYFKD-----HD 141 (509)
Q Consensus 73 rql~r-vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-----~~K~~iLVlNK~DL~p~~~~~~W~~yf~~-----~g 141 (509)
+.+|+ .+..+|++++|+|+.+|..+. .+..++..+. .+.|++||+||+||.+......+.+.+.. .+
T Consensus 58 ~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 135 (164)
T 1r8s_A 58 RPLWRHYFQNTQGLIFVVDSNDRERVN--EAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRN 135 (164)
T ss_dssp HHHHHHHTTTCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCC
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCcc
Confidence 44443 689999999999999986422 3334444332 36899999999999764323344444432 34
Q ss_pred CeEEEeehh
Q 010472 142 ILFVFWSAK 150 (509)
Q Consensus 142 i~~if~Sa~ 150 (509)
+.++.+||+
T Consensus 136 ~~~~~~Sa~ 144 (164)
T 1r8s_A 136 WYIQATCAT 144 (164)
T ss_dssp EEEEECBTT
T ss_pred EEEEEcccC
Confidence 456667774
No 204
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.50 E-value=0.0001 Score=66.14 Aligned_cols=56 Identities=29% Similarity=0.252 Sum_probs=34.6
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCcccccceeeecC---eEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHFQTLIISE---KLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~~~~~~~~---~i~l~d~pg~~ 286 (509)
..++|+|++|||||||+|.|++... .......|.+.......... .+.++|+||.-
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCG
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCch
Confidence 4689999999999999999997643 22222223222112222222 57889999953
No 205
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.49 E-value=2.3e-05 Score=83.28 Aligned_cols=58 Identities=36% Similarity=0.530 Sum_probs=39.1
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccce--eee-cCeEEEEeCCCcc
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQT--LII-SEKLVLCDCPGLV 286 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~--~~~-~~~i~l~d~pg~~ 286 (509)
.|..++|+|++|||||||+|.|+|....-+..++|+|++... ..+ ...+.++||||+.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~ 283 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIR 283 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC-----
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccc
Confidence 467799999999999999999998654445566787765532 222 2357899999974
No 206
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.49 E-value=0.0002 Score=65.89 Aligned_cols=78 Identities=17% Similarity=0.196 Sum_probs=49.4
Q ss_pred HHHHHHH-HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-------cCCcEEEEEeCCCCCC-HHH--HHHHHHHHHh
Q 010472 71 MWRQLWR-VLERSDLIVMVVDARDPLFYRCPDLEAYAREID-------KYKRTLLLVNKADLLP-FSV--RKRWAKYFKD 139 (509)
Q Consensus 71 ~wrql~r-vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-------~~K~~iLVlNK~DL~p-~~~--~~~W~~yf~~ 139 (509)
-++.+|. .+..+|++|+|+|+.++..+ ..+..++..+. .+.|++||+||+||.+ ... .+...++...
T Consensus 85 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~ 162 (208)
T 2yc2_C 85 LYKEQISQYWNGVYYAILVFDVSSMESF--ESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATT 162 (208)
T ss_dssp HHHHHHSTTCCCCCEEEEEEETTCHHHH--HHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcEEEEEEECCCHHHH--HHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHH
Confidence 3444553 57899999999999988642 23445555442 4789999999999987 322 2344455666
Q ss_pred cCCeEEEeehh
Q 010472 140 HDILFVFWSAK 150 (509)
Q Consensus 140 ~gi~~if~Sa~ 150 (509)
.++.++.+||+
T Consensus 163 ~~~~~~~~Sa~ 173 (208)
T 2yc2_C 163 NTLDFFDVSAN 173 (208)
T ss_dssp TTCEEEECCC-
T ss_pred cCCEEEEeccC
Confidence 78888888885
No 207
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.48 E-value=0.00013 Score=66.47 Aligned_cols=55 Identities=24% Similarity=0.311 Sum_probs=38.2
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee-cCeEEEEeCCCcc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII-SEKLVLCDCPGLV 286 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~-~~~i~l~d~pg~~ 286 (509)
...++|+|++|||||||++.|++..........|.+.. .... ...+.++|++|..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~--~~~~~~~~l~i~Dt~G~~ 71 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK--SVQSQGFKLNVWDIGGQR 71 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEE--EEEETTEEEEEEECSSCG
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEE--EEEECCEEEEEEECCCCH
Confidence 46799999999999999999998754444445553321 1111 2357889999963
No 208
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.47 E-value=8.4e-05 Score=65.86 Aligned_cols=56 Identities=25% Similarity=0.270 Sum_probs=35.9
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCcccccceeeec---CeEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHFQTLIIS---EKLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~~~~~~~---~~i~l~d~pg~~ 286 (509)
..++|+|++|||||||+|.|++... .......|.+......... ..+.++|+||..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 63 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCCh
Confidence 3689999999999999999997653 2222233333222222222 257899999954
No 209
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.47 E-value=8e-05 Score=66.07 Aligned_cols=55 Identities=22% Similarity=0.257 Sum_probs=30.4
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee---cCeEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII---SEKLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~---~~~i~l~d~pg~~ 286 (509)
..++|+|.+|||||||+|.|+|..........|.+.... ... ...+.++|++|..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~g~~ 60 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRS-IVVDGEEASLMVYDIWEQD 60 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEEEEE-EEETTEEEEEEEEECC---
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEE-EEECCEEEEEEEEECCCCc
Confidence 368999999999999999999876544444555543211 111 1246788999864
No 210
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.46 E-value=0.00017 Score=64.89 Aligned_cols=72 Identities=19% Similarity=0.250 Sum_probs=50.8
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh----cCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEeehh
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREID----KYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~----~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~Sa~ 150 (509)
..+..+|++|+|+|+.++..+ ..+..++..+. ++.|++||+||+||.+... .+...++....++.++.+||+
T Consensus 80 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (181)
T 2efe_B 80 MYYRGAAAAIIVFDVTNQASF--ERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAK 157 (181)
T ss_dssp HHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSS
T ss_pred HHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECC
Confidence 467899999999999987643 23444544442 3678999999999975321 234555666778888888875
No 211
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.46 E-value=0.00082 Score=68.64 Aligned_cols=71 Identities=21% Similarity=0.206 Sum_probs=51.5
Q ss_pred hhCCEEEEEeeCCCCCCCCChhHHHHHHHHh---cCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCeEEEeehh
Q 010472 80 ERSDLIVMVVDARDPLFYRCPDLEAYAREID---KYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 80 e~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~---~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~gi~~if~Sa~ 150 (509)
..+|.+|+|+|+.++..+-......++.++. .++|+|+|+||+|+.+........+++...++.++++||+
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~ 318 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISAL 318 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTT
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCC
Confidence 4699999999988765322222334444443 3799999999999998876666667777778888888985
No 212
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.46 E-value=0.00012 Score=69.31 Aligned_cols=56 Identities=32% Similarity=0.360 Sum_probs=37.2
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee---cCeEEEEeCCCcc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII---SEKLVLCDCPGLV 286 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~---~~~i~l~d~pg~~ 286 (509)
...++|+|.+|||||||+|.|++.... ....+++|........ ...+.++|+||..
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~ 87 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLL 87 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCc
Confidence 468999999999999999999986543 3445565554332211 2357899999985
No 213
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.45 E-value=5.9e-05 Score=71.04 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=25.8
Q ss_pred CCCcEEEEEecCCCCHhHHHHHHhcCCc
Q 010472 228 PKNVIVGFVGYPNVGKSSTINALVGQKR 255 (509)
Q Consensus 228 ~~g~~vglvG~nGaGKSTLln~L~G~~~ 255 (509)
++|.+++|+||||||||||++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4689999999999999999999999875
No 214
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.45 E-value=0.00025 Score=64.59 Aligned_cols=72 Identities=17% Similarity=0.193 Sum_probs=48.2
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-----cCCcEEEEEeCCCCCCHHHHHHHHHHHH-----hcCCeEEE
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREID-----KYKRTLLLVNKADLLPFSVRKRWAKYFK-----DHDILFVF 146 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-----~~K~~iLVlNK~DL~p~~~~~~W~~yf~-----~~gi~~if 146 (509)
..+..+|++|+|+|+.++..+. .+..++.++. .+.|++||+||+||......+...+++. ..++.++.
T Consensus 79 ~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~ 156 (187)
T 1zj6_A 79 TYYTNTEFVIVVVDSTDRERIS--VTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQA 156 (187)
T ss_dssp HHHTTCCEEEEEEETTCTTTHH--HHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEE
T ss_pred HHhcCCCEEEEEEeCCCHHHHH--HHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEE
Confidence 3678999999999999986322 3444444442 4689999999999986322333444443 34556777
Q ss_pred eehh
Q 010472 147 WSAK 150 (509)
Q Consensus 147 ~Sa~ 150 (509)
+||+
T Consensus 157 ~Sa~ 160 (187)
T 1zj6_A 157 CCAL 160 (187)
T ss_dssp CBTT
T ss_pred ccCC
Confidence 7875
No 215
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.44 E-value=3e-05 Score=83.49 Aligned_cols=72 Identities=11% Similarity=-0.039 Sum_probs=59.1
Q ss_pred CCCC-CccccCCCchHHHHHHHHHHcC--Cce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhh
Q 010472 336 PKPK-PYESQSRPPLALELLRAYCASR--GYV----ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDT 407 (509)
Q Consensus 336 ~~~L-SgGq~QR~~~~~~La~ALa~~p--~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~ 407 (509)
+..| |||++|| +.||++|+.+| .+| |++|||+..+ .+..+|+++.+| ..++..+|.+....+|++.
T Consensus 394 ~~~l~SgG~~qr----v~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~-~~vi~itH~~~~~~~~d~~- 467 (517)
T 4ad8_A 394 LSDVASGGELSR----VMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADT-RQVLVVTHLAQIAARAHHH- 467 (517)
T ss_dssp SSSSSCSSHHHH----HHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHH-SEEEEECCCHHHHHHSSEE-
T ss_pred HHhcCCHHHHHH----HHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCC-CEEEEEecCHHHHHhCCEE-
Confidence 3456 9999999 99999999999 987 9999999999 999999999874 5677778888888775544
Q ss_pred Hhhccc
Q 010472 408 QASSLL 413 (509)
Q Consensus 408 ~~~~~~ 413 (509)
.++..+
T Consensus 468 ~~~~~~ 473 (517)
T 4ad8_A 468 YKVEKQ 473 (517)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 444433
No 216
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.44 E-value=8.8e-05 Score=65.84 Aligned_cols=56 Identities=27% Similarity=0.347 Sum_probs=36.7
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCcccccceeeec---CeEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHFQTLIIS---EKLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~~~~~~~---~~i~l~d~pg~~ 286 (509)
..++|+|++|||||||+|.|++... .......|.+......... ..+.++|+||.-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 66 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCch
Confidence 5789999999999999999998653 2222333333222222222 357899999963
No 217
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.44 E-value=0.00022 Score=63.37 Aligned_cols=72 Identities=17% Similarity=0.073 Sum_probs=47.8
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-----cCCcEEEEEeCCCCCCHHHHHHHHHHHH-----hcCCeEEE
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREID-----KYKRTLLLVNKADLLPFSVRKRWAKYFK-----DHDILFVF 146 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-----~~K~~iLVlNK~DL~p~~~~~~W~~yf~-----~~gi~~if 146 (509)
..+..+|++|+|+|+.+|..+. .+..++..+. .+.|++||+||+||.+......+.+.+. ..++.++.
T Consensus 70 ~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (171)
T 1upt_A 70 CYYSNTDAVIYVVDSCDRDRIG--ISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFK 147 (171)
T ss_dssp GGCTTCSEEEEEEETTCCTTHH--HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEE
T ss_pred HHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEE
Confidence 3678999999999999986432 3333433331 4789999999999987533334444442 33556667
Q ss_pred eehh
Q 010472 147 WSAK 150 (509)
Q Consensus 147 ~Sa~ 150 (509)
+||+
T Consensus 148 ~Sa~ 151 (171)
T 1upt_A 148 TSAT 151 (171)
T ss_dssp CCTT
T ss_pred CcCC
Confidence 7775
No 218
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.43 E-value=0.00018 Score=64.58 Aligned_cols=72 Identities=24% Similarity=0.269 Sum_probs=49.0
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh----cCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEeehh
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREID----KYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~----~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~Sa~ 150 (509)
..+..+|++|+|+|+.++..+. .+..++..+. .+.|++||+||+||.+... .+...++....++.++.+||+
T Consensus 79 ~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 156 (180)
T 2g6b_A 79 AYYRDAHALLLLYDVTNKASFD--NIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAK 156 (180)
T ss_dssp CCGGGCSEEEEEEETTCHHHHH--THHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred HHccCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCC
Confidence 4678999999999999887533 3344443332 4689999999999985321 122334445567788888875
No 219
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.43 E-value=0.0002 Score=65.33 Aligned_cols=72 Identities=19% Similarity=0.186 Sum_probs=49.2
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh----cCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEeehh
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREID----KYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~----~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~Sa~ 150 (509)
..+..+|++|+|+|+.++..+. .+..++..+. .+.|++||+||+||.+... .+...++....++.++.+||+
T Consensus 90 ~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 167 (189)
T 2gf9_A 90 AYYRGAMGFLLMYDIANQESFA--AVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAK 167 (189)
T ss_dssp GGGTTCSEEEEEEETTCHHHHH--THHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTT
T ss_pred HhccCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECC
Confidence 3678999999999999876432 3444554442 3789999999999975321 122334444557888888885
No 220
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.42 E-value=0.00013 Score=64.31 Aligned_cols=75 Identities=20% Similarity=0.200 Sum_probs=48.9
Q ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCC-eEEEeeh
Q 010472 71 MWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDI-LFVFWSA 149 (509)
Q Consensus 71 ~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~gi-~~if~Sa 149 (509)
+..+....+..+|++|+|+|+.+++......+..++.. .+.|+++|+||+|+.+.. .....|.+.+. .++.+||
T Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~Sa 143 (161)
T 2dyk_A 69 IQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRR--KGKPVILVATKVDDPKHE---LYLGPLYGLGFGDPIPTSS 143 (161)
T ss_dssp HHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHH--HTCCEEEEEECCCSGGGG---GGCGGGGGGSSCSCEECBT
T ss_pred HHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHh--cCCCEEEEEECcccccch---HhHHHHHhCCCCCeEEEec
Confidence 33444457899999999999999864332233334332 478999999999998752 11222224565 5666777
Q ss_pred h
Q 010472 150 K 150 (509)
Q Consensus 150 ~ 150 (509)
+
T Consensus 144 ~ 144 (161)
T 2dyk_A 144 E 144 (161)
T ss_dssp T
T ss_pred c
Confidence 4
No 221
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.42 E-value=0.00014 Score=64.51 Aligned_cols=56 Identities=27% Similarity=0.313 Sum_probs=33.1
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcc-eEEeeCCcccccceeeec---CeEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRT-GVTSTPGKTKHFQTLIIS---EKLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~-g~~~~~G~t~~~~~~~~~---~~i~l~d~pg~~ 286 (509)
..++|+|++|||||||+|.|++.... ......|.+......... ..+.++|+||.-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 63 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGG
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCCh
Confidence 46899999999999999999976531 111111211111112222 247888999964
No 222
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.41 E-value=0.00025 Score=64.76 Aligned_cols=73 Identities=25% Similarity=0.264 Sum_probs=50.0
Q ss_pred HHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH----hcCCcEEEEEeCCCCCCHHHH--HHHHHHHHhcCCeEEEeeh
Q 010472 76 WRVLERSDLIVMVVDARDPLFYRCPDLEAYAREI----DKYKRTLLLVNKADLLPFSVR--KRWAKYFKDHDILFVFWSA 149 (509)
Q Consensus 76 ~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~----~~~K~~iLVlNK~DL~p~~~~--~~W~~yf~~~gi~~if~Sa 149 (509)
...+..+|++|+|+|+.++..+. .+..++..+ ..+.|+|||+||+||.+.... ....++....++.++.+||
T Consensus 83 ~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (196)
T 3tkl_A 83 SSYYRGAHGIIVVYDVTDQESFN--NVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSA 160 (196)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHH--THHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECT
T ss_pred HHHHhhCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeC
Confidence 34788999999999999876532 334444433 236799999999999865321 2233444556788888888
Q ss_pred h
Q 010472 150 K 150 (509)
Q Consensus 150 ~ 150 (509)
+
T Consensus 161 ~ 161 (196)
T 3tkl_A 161 K 161 (196)
T ss_dssp T
T ss_pred C
Confidence 5
No 223
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.40 E-value=0.00011 Score=65.37 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=35.5
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee-cCeEEEEeCCCcc
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII-SEKLVLCDCPGLV 286 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~-~~~i~l~d~pg~~ 286 (509)
+...++|+|.+|||||||+|.|++..........|.+. ..... ...+.++|+||.-
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~Dt~G~~ 62 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV--ETVTYKNLKFQVWDLGGLT 62 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEE--EEEEETTEEEEEEEECCCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccce--EEEEECCEEEEEEECCCCh
Confidence 44679999999999999999998754322111112111 11111 2357889999964
No 224
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.40 E-value=0.00023 Score=64.22 Aligned_cols=71 Identities=17% Similarity=0.040 Sum_probs=47.6
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-----cCCcEEEEEeCCCCCCHHHHHHHHHHHHh-----cCCeEEEe
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLEAYAREID-----KYKRTLLLVNKADLLPFSVRKRWAKYFKD-----HDILFVFW 147 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-----~~K~~iLVlNK~DL~p~~~~~~W~~yf~~-----~gi~~if~ 147 (509)
.+..+|++++|+|+.++..+ ..+..++..+. .++|+++|+||+||.+......+.+++.. .++.++.+
T Consensus 82 ~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 159 (183)
T 1moz_A 82 YYADTAAVIFVVDSTDKDRM--STASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVAS 159 (183)
T ss_dssp TTTTEEEEEEEEETTCTTTH--HHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEE
T ss_pred HhccCCEEEEEEECCCHHHH--HHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEc
Confidence 57899999999999988532 23444444442 46899999999999864333444455432 23456667
Q ss_pred ehh
Q 010472 148 SAK 150 (509)
Q Consensus 148 Sa~ 150 (509)
||+
T Consensus 160 Sa~ 162 (183)
T 1moz_A 160 SAI 162 (183)
T ss_dssp BGG
T ss_pred cCC
Confidence 875
No 225
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.39 E-value=5.4e-05 Score=72.48 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=25.3
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcC
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQ 253 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~ 253 (509)
..+|.+++|+|+||||||||+++|+|.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 467999999999999999999999997
No 226
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.39 E-value=5.3e-05 Score=77.74 Aligned_cols=33 Identities=27% Similarity=0.222 Sum_probs=28.8
Q ss_pred cCCC--CcEEEEEecCCCCHhHHHHHHhcCCcceE
Q 010472 226 VAPK--NVIVGFVGYPNVGKSSTINALVGQKRTGV 258 (509)
Q Consensus 226 ~i~~--g~~vglvG~nGaGKSTLln~L~G~~~~g~ 258 (509)
.+.+ |+.++|+|+||||||||+++|+|++....
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred HHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 4667 89999999999999999999999987433
No 227
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.39 E-value=6.8e-05 Score=70.59 Aligned_cols=39 Identities=28% Similarity=0.328 Sum_probs=29.9
Q ss_pred CCCcEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCccc
Q 010472 228 PKNVIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTK 266 (509)
Q Consensus 228 ~~g~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~ 266 (509)
.+|.+++|+||||||||||++.|++... .-...+..+|+
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR 56 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTR 56 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECS
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeeccccc
Confidence 4689999999999999999999998765 22333444444
No 228
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.39 E-value=0.00014 Score=64.44 Aligned_cols=56 Identities=27% Similarity=0.236 Sum_probs=34.1
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcce-EEeeCCcccccceeeec---CeEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRTG-VTSTPGKTKHFQTLIIS---EKLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~g-~~~~~G~t~~~~~~~~~---~~i~l~d~pg~~ 286 (509)
..++|+|++|||||||+|.|++..... .....|.+......... ..+.++|+||..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 65 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGG
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcH
Confidence 468999999999999999999754311 11111111111111121 257889999964
No 229
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=97.38 E-value=4.3e-05 Score=70.47 Aligned_cols=69 Identities=6% Similarity=-0.070 Sum_probs=51.7
Q ss_pred CCCCCCccccCCCchHHHHHHHHHHc----CCce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccch
Q 010472 335 LPKPKPYESQSRPPLALELLRAYCAS----RGYV----ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGME 405 (509)
Q Consensus 335 ~~~~LSgGq~QR~~~~~~La~ALa~~----p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~ 405 (509)
.+..||||++|| ++||++++.. +.++ |++|||+.++ .+..+|+.+..+.. ++...|.....++|++
T Consensus 61 ~~~~LSgGekqr----~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~-~ivith~~~~~~~ad~ 135 (173)
T 3kta_B 61 RIEAMSGGEKAL----TALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQ-FIVITLRDVMMANADK 135 (173)
T ss_dssp CGGGCCHHHHHH----HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSE-EEEECSCHHHHTTCSE
T ss_pred ccccCCHHHHHH----HHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCE-EEEEEecHHHHHhCCE
Confidence 345699999999 9999999865 3666 9999999999 99999999876644 4444455444555555
Q ss_pred hhH
Q 010472 406 DTQ 408 (509)
Q Consensus 406 ~~~ 408 (509)
...
T Consensus 136 i~~ 138 (173)
T 3kta_B 136 IIG 138 (173)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 230
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.38 E-value=6.1e-05 Score=81.01 Aligned_cols=37 Identities=24% Similarity=0.225 Sum_probs=31.9
Q ss_pred CCCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCc
Q 010472 228 PKNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGK 264 (509)
Q Consensus 228 ~~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~ 264 (509)
..|.+++|+|+||||||||+|+|+|+.. .|.+.+.|.
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~ 296 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDT 296 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESS
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCc
Confidence 4678899999999999999999999987 577777664
No 231
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.38 E-value=0.00023 Score=64.55 Aligned_cols=72 Identities=21% Similarity=0.136 Sum_probs=48.3
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-----cCCcEEEEEeCCCCCCHHHHHHHHHHHH-----hcCCeEEE
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREID-----KYKRTLLLVNKADLLPFSVRKRWAKYFK-----DHDILFVF 146 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-----~~K~~iLVlNK~DL~p~~~~~~W~~yf~-----~~gi~~if 146 (509)
..+..+|++|+|+|+.+|.++ ..+..++.++. .+.|+++|+||+||.+....+...+++. ..++.++.
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (186)
T 1ksh_A 81 NYFESTDGLIWVVDSADRQRM--QDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQG 158 (186)
T ss_dssp GGCTTCSEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEE
Confidence 357899999999999998643 23334444432 3689999999999987533344445443 23556666
Q ss_pred eehh
Q 010472 147 WSAK 150 (509)
Q Consensus 147 ~Sa~ 150 (509)
+||+
T Consensus 159 ~Sa~ 162 (186)
T 1ksh_A 159 CSAV 162 (186)
T ss_dssp CCTT
T ss_pred eeCC
Confidence 7775
No 232
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.38 E-value=0.00025 Score=64.80 Aligned_cols=72 Identities=25% Similarity=0.142 Sum_probs=47.1
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-----cCCcEEEEEeCCCCCCHHHHHHHHHHHH-----hcCCeEEE
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREID-----KYKRTLLLVNKADLLPFSVRKRWAKYFK-----DHDILFVF 146 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-----~~K~~iLVlNK~DL~p~~~~~~W~~yf~-----~~gi~~if 146 (509)
..+..+|++|+|+|+.++..+. .+..++..+. .+.|++||+||+||........+.+.+. ..++.++.
T Consensus 86 ~~~~~~d~ii~v~D~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (188)
T 1zd9_A 86 RYCRGVSAIVYMVDAADQEKIE--ASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYS 163 (188)
T ss_dssp HHHTTCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHHccCCEEEEEEECCCHHHHH--HHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEE
Confidence 4678999999999999876432 3333443331 4689999999999986422334444443 23445666
Q ss_pred eehh
Q 010472 147 WSAK 150 (509)
Q Consensus 147 ~Sa~ 150 (509)
+||+
T Consensus 164 ~SA~ 167 (188)
T 1zd9_A 164 ISCK 167 (188)
T ss_dssp CCTT
T ss_pred EECC
Confidence 7774
No 233
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.37 E-value=0.00025 Score=63.92 Aligned_cols=72 Identities=17% Similarity=0.134 Sum_probs=50.1
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH---h--cCCcEEEEEeCCCCCCHH--HHHHHHHHHHhcCCeEEEeeh
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREI---D--KYKRTLLLVNKADLLPFS--VRKRWAKYFKDHDILFVFWSA 149 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~---~--~~K~~iLVlNK~DL~p~~--~~~~W~~yf~~~gi~~if~Sa 149 (509)
..+..+|++++|+|+.++..+. .+..++.++ . .+.|++||+||+||.+.. ..+...++....++.++++||
T Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (187)
T 2a9k_A 85 NYFRSGEGFLCVFSITEMESFA--ATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSA 162 (187)
T ss_dssp HHHHHCSEEEEEEETTCHHHHH--HHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred HHhccCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCC
Confidence 3678999999999999876422 233333332 2 268999999999997532 124455666677888888887
Q ss_pred h
Q 010472 150 K 150 (509)
Q Consensus 150 ~ 150 (509)
+
T Consensus 163 ~ 163 (187)
T 2a9k_A 163 K 163 (187)
T ss_dssp T
T ss_pred C
Confidence 5
No 234
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.36 E-value=0.00021 Score=64.85 Aligned_cols=72 Identities=17% Similarity=0.196 Sum_probs=47.2
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH-----hcCCcEEEEEeCCCCCCHHHHHHHHHHHH-----hcCCeEEE
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREI-----DKYKRTLLLVNKADLLPFSVRKRWAKYFK-----DHDILFVF 146 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~-----~~~K~~iLVlNK~DL~p~~~~~~W~~yf~-----~~gi~~if 146 (509)
..+..+|++|+|+|+.++..+ ..+..++..+ ..+.|++||+||+||......+.+.+++. ..++.++.
T Consensus 84 ~~~~~~d~ii~v~D~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~ 161 (181)
T 2h17_A 84 TYYTNTEFVIVVVDSTDRERI--SVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQA 161 (181)
T ss_dssp GGGTTCCEEEEEEETTCTTTH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEE
Confidence 367899999999999998542 2344444443 25789999999999976322233444432 23456666
Q ss_pred eehh
Q 010472 147 WSAK 150 (509)
Q Consensus 147 ~Sa~ 150 (509)
+||+
T Consensus 162 ~Sa~ 165 (181)
T 2h17_A 162 CCAL 165 (181)
T ss_dssp CBTT
T ss_pred ccCC
Confidence 7875
No 235
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.36 E-value=0.0003 Score=62.30 Aligned_cols=72 Identities=22% Similarity=0.257 Sum_probs=48.6
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh----cCCcEEEEEeCCCCCCHHH-HHHHHHHHHhcCCeEEEeehh
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREID----KYKRTLLLVNKADLLPFSV-RKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~----~~K~~iLVlNK~DL~p~~~-~~~W~~yf~~~gi~~if~Sa~ 150 (509)
..+..+|++|+|+|+.++..+. .+..++..+. .+.|+++|+||+||.+... .+...++....++.++.+||+
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 147 (170)
T 1g16_A 71 AYYRGAMGIILVYDITDERTFT--NIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAK 147 (170)
T ss_dssp HHHTTEEEEEEEEETTCHHHHH--THHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTT
T ss_pred HHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECC
Confidence 4678999999999999886432 3344444332 3689999999999954322 122334445567788888875
No 236
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.36 E-value=8.7e-05 Score=76.53 Aligned_cols=23 Identities=57% Similarity=0.840 Sum_probs=20.9
Q ss_pred EEEEEecCCCCHhHHHHHHhcCC
Q 010472 232 IVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 232 ~vglvG~nGaGKSTLln~L~G~~ 254 (509)
.++|||.||||||||+|+|++..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999863
No 237
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.35 E-value=0.00019 Score=64.16 Aligned_cols=72 Identities=19% Similarity=0.238 Sum_probs=49.9
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH----hcCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEeehh
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREI----DKYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~----~~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~Sa~ 150 (509)
..+..+|++|+|+|+.+|..+. .+..++..+ ..+.|+++|+||+||.+... ......+....++.++.+||+
T Consensus 82 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (179)
T 2y8e_A 82 SYIRDSTVAVVVYDITNTNSFH--QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 159 (179)
T ss_dssp HHHHTCSEEEEEEETTCHHHHH--THHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTT
T ss_pred HHhcCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCC
Confidence 4678999999999999876432 233444333 24688999999999975422 233445556667888888885
No 238
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=97.34 E-value=0.0003 Score=75.13 Aligned_cols=73 Identities=26% Similarity=0.322 Sum_probs=49.4
Q ss_pred HHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCeEEEeehh
Q 010472 73 RQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 73 rql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~gi~~if~Sa~ 150 (509)
+..|..++.+|+||+|+|+.+|..+ .-..++..+ .++|+|+|+||+||.+....+...+++. .++.++++||+
T Consensus 315 ~~~~~~~~~aD~vl~VvD~s~~~s~---~~~~il~~l-~~~piivV~NK~DL~~~~~~~~~~~~~~-~~~~~i~iSAk 387 (482)
T 1xzp_A 315 ERTLQEIEKADIVLFVLDASSPLDE---EDRKILERI-KNKRYLVVINKVDVVEKINEEEIKNKLG-TDRHMVKISAL 387 (482)
T ss_dssp HHHHHHHHHCSEEEEEEETTSCCCH---HHHHHHHHH-TTSSEEEEEEECSSCCCCCHHHHHHHHT-CSTTEEEEEGG
T ss_pred HHHHHHhhcccEEEEEecCCCCCCH---HHHHHHHHh-cCCCEEEEEECcccccccCHHHHHHHhc-CCCcEEEEECC
Confidence 3456789999999999999988743 222333333 5789999999999975312223333332 34567888986
No 239
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.33 E-value=0.00012 Score=68.92 Aligned_cols=71 Identities=15% Similarity=0.277 Sum_probs=50.8
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH---hcCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCeEEEeehh
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLEAYAREI---DKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~---~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~gi~~if~Sa~ 150 (509)
.+..+|++|+|+|+.++.++. .+..++..+ ..+.|+|||+||+||...........+....++.++.+||+
T Consensus 84 ~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (221)
T 3gj0_A 84 YYIQAQCAIIMFDVTSRVTYK--NVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAK 157 (221)
T ss_dssp HHTTCCEEEEEEETTCHHHHH--THHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGG
T ss_pred HHhcCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCC
Confidence 677999999999999977533 333444443 23789999999999987544333344555667888888886
No 240
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.33 E-value=0.00013 Score=65.54 Aligned_cols=55 Identities=24% Similarity=0.240 Sum_probs=34.1
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCccccc--ceeeec---CeEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHF--QTLIIS---EKLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~--~~~~~~---~~i~l~d~pg~~ 286 (509)
..++|+|.+|||||||+|.|++.... ....++.+... ...... ..+.++|+||.-
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 69 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGG
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCch
Confidence 57899999999999999999986432 11122222211 112222 247888999954
No 241
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.33 E-value=0.0004 Score=64.38 Aligned_cols=72 Identities=17% Similarity=0.137 Sum_probs=49.1
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh----cCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCC-eEEEeeh
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREID----KYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDI-LFVFWSA 149 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~----~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi-~~if~Sa 149 (509)
..+..+|++|+|+|+.++..+. .+..++..+. .+.|+|||+||+||..... .+...++....++ .++.+||
T Consensus 97 ~~~~~~d~iilv~D~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA 174 (201)
T 2hup_A 97 SYYRSANGAILAYDITKRSSFL--SVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSA 174 (201)
T ss_dssp HHHTTCSEEEEEEETTBHHHHH--THHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBT
T ss_pred HHHhhCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeC
Confidence 4688999999999999876532 3344444432 4688999999999975211 1233344556677 7777887
Q ss_pred h
Q 010472 150 K 150 (509)
Q Consensus 150 ~ 150 (509)
+
T Consensus 175 ~ 175 (201)
T 2hup_A 175 K 175 (201)
T ss_dssp T
T ss_pred C
Confidence 5
No 242
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.33 E-value=0.00025 Score=63.54 Aligned_cols=72 Identities=19% Similarity=0.282 Sum_probs=47.2
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhc------CCc-EEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEe
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDK------YKR-TLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFW 147 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~------~K~-~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~ 147 (509)
..+..+|++|+|+|+.+|..+. .+..++.++.. .+| ++||+||+||.+... .+...++....++.++.+
T Consensus 75 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (178)
T 2hxs_A 75 KYIYGAQGVLLVYDITNYQSFE--NLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFV 152 (178)
T ss_dssp HHHTTCSEEEEEEETTCHHHHH--THHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEE
T ss_pred HHHhhCCEEEEEEECCCHHHHH--HHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEE
Confidence 3688999999999999887532 33344443322 556 789999999965211 122233444567888888
Q ss_pred ehh
Q 010472 148 SAK 150 (509)
Q Consensus 148 Sa~ 150 (509)
||+
T Consensus 153 Sa~ 155 (178)
T 2hxs_A 153 SAK 155 (178)
T ss_dssp CTT
T ss_pred eCC
Confidence 885
No 243
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.32 E-value=0.00059 Score=62.06 Aligned_cols=72 Identities=21% Similarity=0.257 Sum_probs=50.8
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh--cCCcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCeEEEeehh
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREID--KYKRTLLLVNKADLLPFS-VRKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~--~~K~~iLVlNK~DL~p~~-~~~~W~~yf~~~gi~~if~Sa~ 150 (509)
..+..+|++|+|+|+.+|..+ ..+..++.++. .+.|+++|+||+|+.... ..+...+++...++.++.+||+
T Consensus 112 ~~~~~~d~~i~v~D~~~~~s~--~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 186 (208)
T 3clv_A 112 LYYRGATCAIVVFDISNSNTL--DRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAK 186 (208)
T ss_dssp HHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHHHHHTTCEEEEECTT
T ss_pred HHhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHHHHHcCCcEEEEecC
Confidence 467899999999999998643 23445554443 358999999999942211 2345566777788888888985
No 244
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.32 E-value=0.00019 Score=63.25 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=21.3
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCC
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
..++|+|++|||||||+|.|++..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998654
No 245
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.32 E-value=0.00032 Score=74.11 Aligned_cols=79 Identities=23% Similarity=0.407 Sum_probs=51.1
Q ss_pred HHHHHHH--HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHH--HHHHHHHHHHhc-----
Q 010472 70 DMWRQLW--RVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFS--VRKRWAKYFKDH----- 140 (509)
Q Consensus 70 e~wrql~--rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~--~~~~W~~yf~~~----- 140 (509)
|.++-++ ..++.+|++|+|+|+.+++......+..++. ..++++|||+||+||++.. ..+...+++.+.
T Consensus 264 e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~--~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 341 (456)
T 4dcu_A 264 EKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAH--EAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLD 341 (456)
T ss_dssp SHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHH--HTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGT
T ss_pred HHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHH--HcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCC
Confidence 3444433 4689999999999999987532222223332 2579999999999998642 123333444332
Q ss_pred CCeEEEeehh
Q 010472 141 DILFVFWSAK 150 (509)
Q Consensus 141 gi~~if~Sa~ 150 (509)
+..++++||+
T Consensus 342 ~~~~~~~SA~ 351 (456)
T 4dcu_A 342 YAPILFMSAL 351 (456)
T ss_dssp TSCEEECCTT
T ss_pred CCCEEEEcCC
Confidence 5678888985
No 246
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.32 E-value=0.00097 Score=60.92 Aligned_cols=77 Identities=17% Similarity=0.191 Sum_probs=49.8
Q ss_pred HHHHH-HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh----cCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeE
Q 010472 72 WRQLW-RVLERSDLIVMVVDARDPLFYRCPDLEAYAREID----KYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILF 144 (509)
Q Consensus 72 wrql~-rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~----~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~ 144 (509)
++.++ ..+..+|++|+|+|+.++..+. .+..++..+. .+.|+|||+||+||..... .+.-..+....++.+
T Consensus 85 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 162 (191)
T 3dz8_A 85 YRTITTAYYRGAMGFILMYDITNEESFN--AVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDF 162 (191)
T ss_dssp CHHHHHHHHTTCCEEEEEEETTCHHHHH--THHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHccCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeE
Confidence 33444 3688999999999999876532 3444554442 3789999999999964311 111222334457778
Q ss_pred EEeehh
Q 010472 145 VFWSAK 150 (509)
Q Consensus 145 if~Sa~ 150 (509)
+.+||+
T Consensus 163 ~~~Sa~ 168 (191)
T 3dz8_A 163 FEASAK 168 (191)
T ss_dssp EECBTT
T ss_pred EEEECC
Confidence 888875
No 247
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.31 E-value=0.00019 Score=63.75 Aligned_cols=56 Identities=25% Similarity=0.212 Sum_probs=33.3
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCcccccceeeec---CeEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHFQTLIIS---EKLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~~~~~~~---~~i~l~d~pg~~ 286 (509)
..++|+|.+|||||||+|.|++... .......|.+......... -.+.++|+||..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 66 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 5789999999999999999997643 1111111211111111111 146788999953
No 248
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.31 E-value=0.00022 Score=66.58 Aligned_cols=30 Identities=27% Similarity=0.397 Sum_probs=27.5
Q ss_pred ccCCCCcEEEEEecCCCCHhHHHHHHhcCC
Q 010472 225 NVAPKNVIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 225 ~~i~~g~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
..+.+|.+++|+|++|||||||.+.|++..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 457789999999999999999999999976
No 249
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.31 E-value=0.00016 Score=71.94 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=22.1
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCC
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
-.++|+|.+|||||||+|.|+|..
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCC
Confidence 479999999999999999999975
No 250
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.30 E-value=0.00024 Score=62.58 Aligned_cols=72 Identities=17% Similarity=0.128 Sum_probs=48.7
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH---h--cCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEeeh
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREI---D--KYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFWSA 149 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~---~--~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~Sa 149 (509)
..+..+|.+++|+|+.+|..+. .+..++..+ . .++|+++|+||+||.+... .+...++....++.++.+||
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (168)
T 1u8z_A 71 NYFRSGEGFLCVFSITEMESFA--ATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSA 148 (168)
T ss_dssp HHHHHCSEEEEEEETTCHHHHH--HHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCT
T ss_pred HHhhcCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCC
Confidence 3678999999999999876432 233333332 2 2789999999999975321 23344555566778888887
Q ss_pred h
Q 010472 150 K 150 (509)
Q Consensus 150 ~ 150 (509)
+
T Consensus 149 ~ 149 (168)
T 1u8z_A 149 K 149 (168)
T ss_dssp T
T ss_pred C
Confidence 5
No 251
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.30 E-value=0.00018 Score=64.55 Aligned_cols=55 Identities=22% Similarity=0.283 Sum_probs=32.4
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCcccccceeeec----CeEEEEeCCCc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHFQTLIIS----EKLVLCDCPGL 285 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~~~~~~~----~~i~l~d~pg~ 285 (509)
..++|+|++|||||||+|.|++... .......|.+......... ..+.++|+||.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 68 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC--
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCC
Confidence 5789999999999999999988643 2222222222211112221 25788999995
No 252
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.29 E-value=0.00026 Score=64.97 Aligned_cols=72 Identities=22% Similarity=0.175 Sum_probs=51.1
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh----cCCcEEEEEeCCCCCCHH--HHHHHHHHHHhcCCeEEEeehh
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREID----KYKRTLLLVNKADLLPFS--VRKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~----~~K~~iLVlNK~DL~p~~--~~~~W~~yf~~~gi~~if~Sa~ 150 (509)
..+..+|++|+|+|+.++..+. .+..++.++. .+.|++||+||+||.+.. ..+...++....++.++.+||+
T Consensus 91 ~~~~~~d~iilV~d~~~~~s~~--~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 168 (192)
T 2fg5_A 91 MYYRGSAAAVIVYDITKQDSFY--TLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAK 168 (192)
T ss_dssp HHHTTCSEEEEEEETTCTHHHH--HHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTT
T ss_pred HhhccCCEEEEEEeCCCHHHHH--HHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 4678999999999999876432 3444544442 368999999999997521 1234556666778888888875
No 253
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.29 E-value=0.0002 Score=64.05 Aligned_cols=56 Identities=25% Similarity=0.270 Sum_probs=33.8
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcc-eEEeeCCcccccceeeec---CeEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRT-GVTSTPGKTKHFQTLIIS---EKLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~-g~~~~~G~t~~~~~~~~~---~~i~l~d~pg~~ 286 (509)
..++|+|++|||||||+|.|++.... ......+.+......... ..+.++|+||.-
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 74 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcH
Confidence 57899999999999999999865431 111111111111111122 257889999953
No 254
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.29 E-value=0.00035 Score=63.97 Aligned_cols=72 Identities=19% Similarity=0.250 Sum_probs=48.8
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh----cCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEeehh
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREID----KYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~----~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~Sa~ 150 (509)
..+..+|++|+|+|+.++..+. .+..++..+. .+.|++||+||+||.+... .+...++....++.++.+||+
T Consensus 89 ~~~~~~d~ii~v~d~~~~~s~~--~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 166 (191)
T 2a5j_A 89 SYYRGAAGALLVYDITRRETFN--HLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAK 166 (191)
T ss_dssp HHHTTCSEEEEEEETTCHHHHH--THHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTT
T ss_pred HHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 4678999999999999876433 3444444432 3788999999999965211 122334445567888888885
No 255
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.29 E-value=0.00043 Score=62.47 Aligned_cols=71 Identities=24% Similarity=0.248 Sum_probs=45.5
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh----cCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEeehh
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLEAYAREID----KYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~----~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~Sa~ 150 (509)
.+..+|++|+|+|+.+|..+ ..+..++..+. .+.|++||+||+||.+... .+.-.++....++.++.+||+
T Consensus 77 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 153 (183)
T 2fu5_C 77 YYRGAMGIMLVYDITNEKSF--DNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAK 153 (183)
T ss_dssp TTTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC-
T ss_pred HHhcCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCC
Confidence 57899999999999987643 23444554442 3679999999999975211 122233444557788888875
No 256
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.29 E-value=9.7e-05 Score=72.83 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=22.9
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKR 255 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~ 255 (509)
.-.++|+|.+|||||||+|.|+|...
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCCc
Confidence 35799999999999999999999753
No 257
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.28 E-value=0.00034 Score=61.82 Aligned_cols=72 Identities=21% Similarity=0.174 Sum_probs=49.4
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH---hcCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEeehh
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREI---DKYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~---~~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~Sa~ 150 (509)
..+..+|++++|+|+.++.++. .+..++..+ ..+.|+++|+||+||.+... .+...++....++.++.+||+
T Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (168)
T 1z2a_A 73 AYYRGAQACVLVFSTTDRESFE--AISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVK 149 (168)
T ss_dssp HHHTTCCEEEEEEETTCHHHHH--THHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTT
T ss_pred HHhcCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecC
Confidence 4678999999999999876432 333344333 24789999999999976321 223344555567888888875
No 258
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.28 E-value=0.00019 Score=63.45 Aligned_cols=56 Identities=27% Similarity=0.224 Sum_probs=34.8
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCcccccceeee---cCeEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHFQTLII---SEKLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~~~~~~---~~~i~l~d~pg~~ 286 (509)
..++|+|.+|||||||+|.|++... .......|.+........ ...+.++|+||..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 66 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 4689999999999999999997532 111122222221112222 2257889999954
No 259
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.28 E-value=0.00019 Score=64.27 Aligned_cols=57 Identities=23% Similarity=0.190 Sum_probs=35.3
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcc-eEEeeCCcccccceeeec---CeEEEEeCCCcc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRT-GVTSTPGKTKHFQTLIIS---EKLVLCDCPGLV 286 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~-g~~~~~G~t~~~~~~~~~---~~i~l~d~pg~~ 286 (509)
-..++|+|.+|||||||+|.|++.... ......|.+......... ..+.++|+||.-
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 75 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCCh
Confidence 357999999999999999999976531 111112222111122222 257889999954
No 260
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.28 E-value=0.00023 Score=71.22 Aligned_cols=76 Identities=25% Similarity=0.232 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhc---CCcEEEEEeCCCCCCHHH-HHHHHHHHHhcCCeEEE
Q 010472 71 MWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDK---YKRTLLLVNKADLLPFSV-RKRWAKYFKDHDILFVF 146 (509)
Q Consensus 71 ~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~---~K~~iLVlNK~DL~p~~~-~~~W~~yf~~~gi~~if 146 (509)
+-+..+..+..+|++|+|+|+.+++. ...+.+...+.. ++|+|||+||+|+.+... ...+++.+ .....++.
T Consensus 76 ~~~~~~~~l~~ad~il~VvD~~~~~~---~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~ 151 (301)
T 1wf3_A 76 MDQEVYEALADVNAVVWVVDLRHPPT---PEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL-LPEAEPRM 151 (301)
T ss_dssp HHHHHHHHTSSCSEEEEEEETTSCCC---HHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT-STTSEEEE
T ss_pred HHHHHHHHHhcCCEEEEEEECCCCCC---hHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh-cCcCcEEE
Confidence 45566778999999999999998863 222333333432 689999999999997544 44454444 12234566
Q ss_pred eehh
Q 010472 147 WSAK 150 (509)
Q Consensus 147 ~Sa~ 150 (509)
+||+
T Consensus 152 iSA~ 155 (301)
T 1wf3_A 152 LSAL 155 (301)
T ss_dssp CCTT
T ss_pred EeCC
Confidence 7875
No 261
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.28 E-value=8.8e-05 Score=76.24 Aligned_cols=74 Identities=7% Similarity=-0.060 Sum_probs=58.8
Q ss_pred CCCccccCCCchHHHHHHHHH---------HcCCce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhcc
Q 010472 338 PKPYESQSRPPLALELLRAYC---------ASRGYV----ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVG 403 (509)
Q Consensus 338 ~LSgGq~QR~~~~~~La~ALa---------~~p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~ 403 (509)
.+|+||+|+ +.||++|+ .+|.+| |+++||+..+ .+..+|..+. .++++.+| +.. .
T Consensus 265 ~lS~Gqqq~----l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th-~~~---~ 333 (359)
T 2o5v_A 265 YASRGEGRT----VALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTE-LAP---G 333 (359)
T ss_dssp HCCHHHHHH----HHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESS-CCT---T
T ss_pred hCCHHHHHH----HHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEe-ccc---c
Confidence 599999999 99999999 689987 9999999999 9999998875 46666666 333 5
Q ss_pred chhhHhhcccccccCCCCc
Q 010472 404 MEDTQASSLLELHESDASD 422 (509)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~ 422 (509)
++.+..++.|+++..++.+
T Consensus 334 ~~~i~~l~~G~i~~~g~~~ 352 (359)
T 2o5v_A 334 AALTLRAQAGRFTPVADEE 352 (359)
T ss_dssp CSEEEEEETTEEEECCCTT
T ss_pred CCEEEEEECCEEEecCCHH
Confidence 5566667778887655544
No 262
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.28 E-value=0.00038 Score=63.43 Aligned_cols=71 Identities=20% Similarity=0.145 Sum_probs=45.7
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-----cCCcEEEEEeCCCCCCHHHHHHHHHHH-----HhcCCeEEEe
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLEAYAREID-----KYKRTLLLVNKADLLPFSVRKRWAKYF-----KDHDILFVFW 147 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-----~~K~~iLVlNK~DL~p~~~~~~W~~yf-----~~~gi~~if~ 147 (509)
.+..+|++|+|+|+.+|..+. .+..++..+. .++|+++|+||+||.+......+.+.+ ...++.++.+
T Consensus 86 ~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (189)
T 2x77_A 86 YFSDTDAVIYVVDSTDRDRMG--VAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKS 163 (189)
T ss_dssp SSTTCCEEEEEEETTCCTTHH--HHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEEC
T ss_pred HhhcCCEEEEEEeCCCHHHHH--HHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEc
Confidence 567999999999999986422 3333343331 368999999999998752223333333 2234556667
Q ss_pred ehh
Q 010472 148 SAK 150 (509)
Q Consensus 148 Sa~ 150 (509)
||+
T Consensus 164 Sa~ 166 (189)
T 2x77_A 164 SSK 166 (189)
T ss_dssp CTT
T ss_pred cCC
Confidence 774
No 263
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.26 E-value=0.00043 Score=63.77 Aligned_cols=72 Identities=18% Similarity=0.184 Sum_probs=48.5
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh----cCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEeehh
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREID----KYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~----~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~Sa~ 150 (509)
..+..+|++|+|+|+.++..+ ..+..++.++. .+.|++||+||+||.+... .+...++....++.++.+||+
T Consensus 76 ~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (203)
T 1zbd_A 76 AYYRGAMGFILMYDITNEESF--NAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAK 153 (203)
T ss_dssp TTGGGCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTT
T ss_pred HhhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECC
Confidence 367899999999999987643 23444544442 4789999999999976321 122233344457778888875
No 264
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.26 E-value=0.00021 Score=65.17 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=21.2
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCC
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
..++|+|++|||||||+|.|+|..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999963
No 265
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.26 E-value=0.00022 Score=65.01 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=22.3
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCC
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
...++|+|++|||||||+|.|++..
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4579999999999999999999864
No 266
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.25 E-value=0.00024 Score=63.89 Aligned_cols=56 Identities=27% Similarity=0.230 Sum_probs=34.9
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcc-eEEeeCCcccccceeee---cCeEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRT-GVTSTPGKTKHFQTLII---SEKLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~-g~~~~~G~t~~~~~~~~---~~~i~l~d~pg~~ 286 (509)
..++|+|.+|||||||+|.|++.... ......|.+........ ...+.++|+||..
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 72 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSG
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCCh
Confidence 57899999999999999999976431 11111222221111222 2257899999954
No 267
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.25 E-value=0.00022 Score=65.49 Aligned_cols=57 Identities=25% Similarity=0.313 Sum_probs=37.6
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCcccccceeee---cCeEEEEeCCCcc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHFQTLII---SEKLVLCDCPGLV 286 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~~~~~~---~~~i~l~d~pg~~ 286 (509)
...++|+|.+|||||||+|.|++... .......|.+........ ...+.++|+||.-
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 83 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSG
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCch
Confidence 35799999999999999999998653 233334444332222222 2257889999953
No 268
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.25 E-value=1.2e-05 Score=77.39 Aligned_cols=35 Identities=23% Similarity=0.240 Sum_probs=25.6
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKT 265 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t 265 (509)
++++|+||||||||||+++|+|... .|.+.+.|..
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~ 64 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT 64 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEE
Confidence 5778999999999999999999876 5666666644
No 269
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.25 E-value=0.00032 Score=62.82 Aligned_cols=57 Identities=25% Similarity=0.425 Sum_probs=36.6
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccce--eee-cCeEEEEeCCCcc
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQT--LII-SEKLVLCDCPGLV 286 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~--~~~-~~~i~l~d~pg~~ 286 (509)
....++|+|.+|||||||+|.|++.... ....++.+..... ... ...+.++|+||..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 66 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVT-EQEAGGITQHIGAYQVTVNDKKITFLDTPGHE 66 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSS-CSSCCSSSTTCCCCEEEETTEEEEESCCCSSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccc-cCCCCceeEeeeEEEEEeCCceEEEEECCCCH
Confidence 4568999999999999999999986431 1112333322211 122 2357789999963
No 270
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.25 E-value=0.0002 Score=64.79 Aligned_cols=57 Identities=19% Similarity=0.204 Sum_probs=34.4
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcc-eEEeeCCcccccceeeec---CeEEEEeCCCcc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRT-GVTSTPGKTKHFQTLIIS---EKLVLCDCPGLV 286 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~-g~~~~~G~t~~~~~~~~~---~~i~l~d~pg~~ 286 (509)
...++|+|++|||||||+|.|++.... ......+.+......... ..+.++|+||.-
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 70 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 357899999999999999999876431 111111111111111222 257889999953
No 271
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.25 E-value=0.00012 Score=66.86 Aligned_cols=28 Identities=25% Similarity=0.213 Sum_probs=24.3
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCCc
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQKR 255 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~~ 255 (509)
+.+| +++|+|+||||||||+.+|.+.+.
T Consensus 24 ~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 24 FSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp CCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 4566 899999999999999999988654
No 272
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.25 E-value=0.00025 Score=64.74 Aligned_cols=56 Identities=23% Similarity=0.235 Sum_probs=35.8
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCcccccceeee---cCeEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHFQTLII---SEKLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~~~~~~---~~~i~l~d~pg~~ 286 (509)
..++|+|.+|||||||+|.|++... .......|.+........ ...+.++|+||.-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 82 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcH
Confidence 5789999999999999999998653 221222233222222222 2257889999953
No 273
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.25 E-value=0.00023 Score=65.44 Aligned_cols=57 Identities=23% Similarity=0.305 Sum_probs=33.8
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcc-eEEeeCCcccccceeeecC---eEEEEeCCCcc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRT-GVTSTPGKTKHFQTLIISE---KLVLCDCPGLV 286 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~-g~~~~~G~t~~~~~~~~~~---~i~l~d~pg~~ 286 (509)
...++|+|.+|||||||+|.|++.... ......|.+.......... .+.++|+||..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 86 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcH
Confidence 357899999999999999999986532 1122222222222222222 57889999953
No 274
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.25 E-value=0.00066 Score=63.33 Aligned_cols=71 Identities=15% Similarity=0.226 Sum_probs=47.8
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh----cCCcEEEEEeCCCCCCHH-HHHHHH-HHHHhcCCeEEEeehh
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLEAYAREID----KYKRTLLLVNKADLLPFS-VRKRWA-KYFKDHDILFVFWSAK 150 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~----~~K~~iLVlNK~DL~p~~-~~~~W~-~yf~~~gi~~if~Sa~ 150 (509)
.+..+|++|+|+|+.++.++. .+..++..+. .++|+|||+||+||.... ...... ++....++.++.+||+
T Consensus 81 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (218)
T 4djt_A 81 YYIGASGAILFFDVTSRITCQ--NLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAK 157 (218)
T ss_dssp HHTTCSEEEEEEETTCHHHHH--THHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTT
T ss_pred HhhcCCEEEEEEeCCCHHHHH--HHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecC
Confidence 577899999999999987543 3434444332 258999999999998753 223333 4445567888888985
No 275
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.24 E-value=0.00031 Score=62.87 Aligned_cols=71 Identities=20% Similarity=0.141 Sum_probs=48.2
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH---hcCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEeehh
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLEAYAREI---DKYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~---~~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~Sa~ 150 (509)
.+..+|++|+|+|+.+|..+. .+..++..+ .++.|+|||+||+||.+... ......+....++.++.+||+
T Consensus 78 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (181)
T 3tw8_B 78 YYRGTHGVIVVYDVTSAESFV--NVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAK 153 (181)
T ss_dssp GGTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTT
T ss_pred HhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECC
Confidence 578899999999999876432 333444443 24689999999999875321 123334445557788888875
No 276
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.24 E-value=0.00027 Score=65.21 Aligned_cols=56 Identities=25% Similarity=0.276 Sum_probs=35.9
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCcccccceeee---cCeEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHFQTLII---SEKLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~~~~~~---~~~i~l~d~pg~~ 286 (509)
..++|+|.+|||||||+|.|++... .......|.+........ ...+.++|+||.-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCch
Confidence 5789999999999999999998653 211222232222222222 2257889999963
No 277
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.24 E-value=0.00026 Score=65.59 Aligned_cols=56 Identities=25% Similarity=0.282 Sum_probs=35.0
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcc-eEEeeCCcccccceeeecC---eEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRT-GVTSTPGKTKHFQTLIISE---KLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~-g~~~~~G~t~~~~~~~~~~---~i~l~d~pg~~ 286 (509)
..++|+|++|||||||+|.|++.... ......|.+.......... .+.++|+||.-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChH
Confidence 57899999999999999999986431 1111122221111222222 57899999964
No 278
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.24 E-value=0.00037 Score=63.22 Aligned_cols=56 Identities=20% Similarity=0.322 Sum_probs=38.3
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee-cCeEEEEeCCCcc
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII-SEKLVLCDCPGLV 286 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~-~~~i~l~d~pg~~ 286 (509)
+...++|+|.+|||||||+|.|++..........|.+. ..... ...+.++|+||.-
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~Dt~G~~ 76 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVINNTRFLMWDIGGQE 76 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSC--EEEEETTEEEEEEEESSSG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceee--EEEEECCEEEEEEECCCCH
Confidence 35689999999999999999999876533344444332 11222 2357889999973
No 279
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.24 E-value=0.00027 Score=64.50 Aligned_cols=56 Identities=21% Similarity=0.210 Sum_probs=34.9
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCcccccceeeec---CeEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHFQTLIIS---EKLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~~~~~~~---~~i~l~d~pg~~ 286 (509)
..++|+|.+|||||||+|.|++... .......|.+......... ..+.++|+||.-
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCch
Confidence 5799999999999999999987543 1111122222111122222 257889999953
No 280
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.24 E-value=0.0005 Score=63.27 Aligned_cols=72 Identities=13% Similarity=0.065 Sum_probs=47.4
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-----cCCcEEEEEeCCCCCCHHHHHHHHHHHHh-----cCCeEEE
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREID-----KYKRTLLLVNKADLLPFSVRKRWAKYFKD-----HDILFVF 146 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-----~~K~~iLVlNK~DL~p~~~~~~W~~yf~~-----~gi~~if 146 (509)
..+..+|++|+|+|+.+|..+ ..+..++..+. .+.|++||+||+||.+....+.+.+.+.. .++.++.
T Consensus 92 ~~~~~~d~iilv~D~~~~~s~--~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~ 169 (192)
T 2b6h_A 92 HYFQNTQGLIFVVDSNDRERV--QESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQA 169 (192)
T ss_dssp HHHHTCCEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEE
T ss_pred HHhccCCEEEEEEECCCHHHH--HHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEE
Confidence 367899999999999998642 23334444432 36899999999999764333444444432 2345666
Q ss_pred eehh
Q 010472 147 WSAK 150 (509)
Q Consensus 147 ~Sa~ 150 (509)
+||+
T Consensus 170 ~SA~ 173 (192)
T 2b6h_A 170 TCAT 173 (192)
T ss_dssp CBTT
T ss_pred CcCC
Confidence 7774
No 281
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.23 E-value=0.00029 Score=65.05 Aligned_cols=57 Identities=28% Similarity=0.333 Sum_probs=34.1
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCcccccceeeec---CeEEEEeCCCcc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHFQTLIIS---EKLVLCDCPGLV 286 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~~~~~~~---~~i~l~d~pg~~ 286 (509)
...++|+|.+|||||||+|.|++... .......|.+......... ..+.++|+||..
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 88 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCT
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCc
Confidence 46899999999999999999997653 2223333433322222222 247899999953
No 282
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.23 E-value=0.00025 Score=65.78 Aligned_cols=59 Identities=27% Similarity=0.282 Sum_probs=35.5
Q ss_pred CCCcEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCcccccceeeec---CeEEEEeCCCcc
Q 010472 228 PKNVIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHFQTLIIS---EKLVLCDCPGLV 286 (509)
Q Consensus 228 ~~g~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~~~~~~~---~~i~l~d~pg~~ 286 (509)
.....++|+|++|||||||+|.|++... .......|.+......... ..+.++|+||..
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 3456899999999999999999997543 1111111111111122222 257899999964
No 283
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.23 E-value=0.0003 Score=64.38 Aligned_cols=57 Identities=21% Similarity=0.130 Sum_probs=35.2
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcc-eEEeeCCcccccceeeec---CeEEEEeCCCcc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRT-GVTSTPGKTKHFQTLIIS---EKLVLCDCPGLV 286 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~-g~~~~~G~t~~~~~~~~~---~~i~l~d~pg~~ 286 (509)
...++|+|.+|||||||+|.|++.... ......|.+......... ..+.++|+||.-
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 81 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGG
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCch
Confidence 357899999999999999999976532 111222322222222222 257889999964
No 284
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.23 E-value=0.00019 Score=71.80 Aligned_cols=57 Identities=23% Similarity=0.211 Sum_probs=39.6
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee----cCeEEEEeCCCcc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII----SEKLVLCDCPGLV 286 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~----~~~i~l~d~pg~~ 286 (509)
+..++|+|.+|||||||+|.+.+....-....+|.|........ ...+.++|+||.-
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~ 63 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcH
Confidence 45789999999999999999988744333345565654332221 1357889999964
No 285
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.23 E-value=0.00014 Score=67.72 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=25.6
Q ss_pred CCCcEEEEEecCCCCHhHHHHHHhcCCc
Q 010472 228 PKNVIVGFVGYPNVGKSSTINALVGQKR 255 (509)
Q Consensus 228 ~~g~~vglvG~nGaGKSTLln~L~G~~~ 255 (509)
.+|.+++|+|+||||||||.++|++.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999764
No 286
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.23 E-value=0.00025 Score=64.78 Aligned_cols=56 Identities=23% Similarity=0.261 Sum_probs=34.9
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCcccccceeeec---CeEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHFQTLIIS---EKLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~~~~~~~---~~i~l~d~pg~~ 286 (509)
..++|+|++|||||||+|.|++... .......+.+......... ..+.++|+||..
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 76 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcH
Confidence 5789999999999999999998543 1111112222211222222 247889999954
No 287
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.22 E-value=0.00014 Score=71.75 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=31.3
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcc
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKT 265 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t 265 (509)
++.| ++|+||||+|||||+++|+|....+.+.+.|..
T Consensus 43 ~~~G--vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~ 79 (274)
T 2x8a_A 43 TPAG--VLLAGPPGCGKTLLAKAVANESGLNFISVKGPE 79 (274)
T ss_dssp CCSE--EEEESSTTSCHHHHHHHHHHHTTCEEEEEETTT
T ss_pred CCCe--EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHH
Confidence 4566 899999999999999999998877777777654
No 288
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.22 E-value=0.00044 Score=62.95 Aligned_cols=55 Identities=20% Similarity=0.318 Sum_probs=35.7
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee-cCeEEEEeCCCcc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII-SEKLVLCDCPGLV 286 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~-~~~i~l~d~pg~~ 286 (509)
...++|+|.+|||||||+|.|++..........|.+. ..... ...+.++|+||..
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~Dt~G~~ 71 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVINNTRFLMWDIGGQE 71 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSC--EEEEETTEEEEEEECCC--
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccce--EEEEECCEEEEEEECCCCH
Confidence 4679999999999999999999755433333333221 11122 2357899999974
No 289
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.22 E-value=0.00031 Score=65.04 Aligned_cols=57 Identities=19% Similarity=0.194 Sum_probs=32.5
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcc-eEEeeCCcccccceeeec---CeEEEEeCCCcc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRT-GVTSTPGKTKHFQTLIIS---EKLVLCDCPGLV 286 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~-g~~~~~G~t~~~~~~~~~---~~i~l~d~pg~~ 286 (509)
...++|+|.+|||||||+|.|++.... ......|.+......... ..+.++|+||.-
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 85 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcH
Confidence 457999999999999999999976431 111111211111112222 257889999953
No 290
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.21 E-value=0.00024 Score=65.59 Aligned_cols=57 Identities=23% Similarity=0.279 Sum_probs=34.8
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcc-eEEeeCCcccccceeeec---CeEEEEeCCCcc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRT-GVTSTPGKTKHFQTLIIS---EKLVLCDCPGLV 286 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~-g~~~~~G~t~~~~~~~~~---~~i~l~d~pg~~ 286 (509)
...++|+|.+|||||||+|.|++.... ......|.+......... ..+.++|+||..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSG
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 357899999999999999999986531 111111211111111111 257889999954
No 291
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.21 E-value=0.00029 Score=62.10 Aligned_cols=24 Identities=29% Similarity=0.230 Sum_probs=21.5
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCC
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
..++|+|.+|||||||+|.|++..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999999754
No 292
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.21 E-value=0.00014 Score=74.07 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=24.8
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCC
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
...+.+++|+|+||+|||||+|.|++..
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999998754
No 293
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.21 E-value=0.00026 Score=64.69 Aligned_cols=57 Identities=21% Similarity=0.291 Sum_probs=35.3
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcc-eEEeeCCcccccceeee---cCeEEEEeCCCcc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRT-GVTSTPGKTKHFQTLII---SEKLVLCDCPGLV 286 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~-g~~~~~G~t~~~~~~~~---~~~i~l~d~pg~~ 286 (509)
-..++|+|.+|||||||+|.|++.... ......|.+........ ...+.++|+||.-
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 85 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCch
Confidence 357999999999999999999986432 11111122211111111 2357889999974
No 294
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.21 E-value=0.00019 Score=64.76 Aligned_cols=56 Identities=23% Similarity=0.240 Sum_probs=34.0
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee-cCeEEEEeCCCcc
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII-SEKLVLCDCPGLV 286 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~-~~~i~l~d~pg~~ 286 (509)
....++|+|++|||||||+|.|++..........|.. ...... ...+.++|+||..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~ 73 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFN--VETLSYKNLKLNVWDLGGQT 73 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCC--EEEEEETTEEEEEEEEC---
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccc--eEEEEECCEEEEEEECCCCH
Confidence 3568999999999999999999865432222222211 112222 2357889999974
No 295
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.20 E-value=0.00096 Score=64.74 Aligned_cols=68 Identities=13% Similarity=0.097 Sum_probs=46.2
Q ss_pred hCCEEEEEeeCCCC--CCCCChhHHHHHHHH-----hcCCcEEEEEeCCCCCCHHHHHHHHHHHHh-cCCeEEEeehh
Q 010472 81 RSDLIVMVVDARDP--LFYRCPDLEAYAREI-----DKYKRTLLLVNKADLLPFSVRKRWAKYFKD-HDILFVFWSAK 150 (509)
Q Consensus 81 ~sDvVl~VvDaR~P--l~~~~~~le~~v~~~-----~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~-~gi~~if~Sa~ 150 (509)
.+|++|+|+|+.++ .++ ..+..++.++ ..+.|+|||.||+||......+...++... .++.++.+||+
T Consensus 162 ~ad~vilV~D~t~~~~~s~--~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk 237 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNF--DDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSAR 237 (255)
T ss_dssp ECCEEEEEEECBC----CH--HHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTT
T ss_pred cCCEEEEEEECCCCchhhH--HHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECC
Confidence 69999999999997 432 2344444433 246899999999999886555544454444 36777778885
No 296
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.00019 Score=65.55 Aligned_cols=54 Identities=22% Similarity=0.291 Sum_probs=33.9
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCcceE--EeeCCcccccceeeecCeEEEEeCCCcc
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKRTGV--TSTPGKTKHFQTLIISEKLVLCDCPGLV 286 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~~g~--~~~~G~t~~~~~~~~~~~i~l~d~pg~~ 286 (509)
....++|+|++|||||||+|.|++...... ...++.+... ....+.++|+||..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~ 102 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHV 102 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC----CCTTCSEEEETTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee----cCCeEEEEECCCCc
Confidence 345899999999999999999998753211 1222222222 23357789999975
No 297
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.20 E-value=0.00016 Score=65.57 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=24.3
Q ss_pred CCCcEEEEEecCCCCHhHHHHHHhcCC
Q 010472 228 PKNVIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 228 ~~g~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
.+|.+++|+|+|||||||+.++|++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 458899999999999999999998864
No 298
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.20 E-value=0.0012 Score=59.08 Aligned_cols=70 Identities=7% Similarity=0.022 Sum_probs=46.1
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHH---HHHHh----cCCcEEEEEeCCCCC-------CHHHHHHHHHHHHhcCC
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAY---AREID----KYKRTLLLVNKADLL-------PFSVRKRWAKYFKDHDI 142 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~---v~~~~----~~K~~iLVlNK~DL~-------p~~~~~~W~~yf~~~gi 142 (509)
..+..+|++|+|+|+.+|.++. .+..+ +..+. ++.|++||.||+||. +.+....|.+.+ .++
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~--~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~--~~~ 143 (178)
T 2iwr_A 68 KFSGWADAVIFVFSLEDENSFQ--AVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADM--KRC 143 (178)
T ss_dssp HHHHHCSEEEEEEETTCHHHHH--HHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHH--SSE
T ss_pred HHHHhCCEEEEEEECcCHHHHH--HHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhh--cCC
Confidence 4567899999999999887533 33343 33332 367999999999993 333334443322 256
Q ss_pred eEEEeehh
Q 010472 143 LFVFWSAK 150 (509)
Q Consensus 143 ~~if~Sa~ 150 (509)
.++.+||+
T Consensus 144 ~~~~~Sa~ 151 (178)
T 2iwr_A 144 SYYETXAT 151 (178)
T ss_dssp EEEEEBTT
T ss_pred eEEEEecc
Confidence 77778875
No 299
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.19 E-value=0.00062 Score=59.61 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=47.2
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH---h--cCCcEEEEEeCCCCCCHHHH-HHHHHHHHhcCCeEEEeehh
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLEAYAREI---D--KYKRTLLLVNKADLLPFSVR-KRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~---~--~~K~~iLVlNK~DL~p~~~~-~~W~~yf~~~gi~~if~Sa~ 150 (509)
.+..+|.+++|+|+.++..+. .+..++..+ . .+.|+++|+||+|+.+.... +...++....++.++.+||+
T Consensus 71 ~~~~~~~~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 147 (166)
T 2ce2_X 71 YMRTGEGFLCVFAINNTKSFE--DIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAK 147 (166)
T ss_dssp HHHHCSEEEEEEETTCHHHHH--HHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTT
T ss_pred hhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCC
Confidence 678999999999998875422 233343333 2 26899999999999873222 22233344557778888875
No 300
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.19 E-value=0.00037 Score=61.82 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=20.4
Q ss_pred EEEEEecCCCCHhHHHHHHhcCCc
Q 010472 232 IVGFVGYPNVGKSSTINALVGQKR 255 (509)
Q Consensus 232 ~vglvG~nGaGKSTLln~L~G~~~ 255 (509)
.++|+|++|||||||+|.|++...
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~~ 27 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQG 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHhccC
Confidence 588999999999999999987643
No 301
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.19 E-value=0.00032 Score=62.94 Aligned_cols=57 Identities=23% Similarity=0.190 Sum_probs=34.8
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccc--eeeec---CeEEEEeCCCcc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQ--TLIIS---EKLVLCDCPGLV 286 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~--~~~~~---~~i~l~d~pg~~ 286 (509)
...++|+|.+|||||||+|.|++.........+..+.... ..... ..+.++|+||.-
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 71 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 3578999999999999999999865421111222222211 11122 257889999953
No 302
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.19 E-value=0.00026 Score=64.19 Aligned_cols=56 Identities=23% Similarity=0.324 Sum_probs=36.0
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee-cCeEEEEeCCCcc
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII-SEKLVLCDCPGLV 286 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~-~~~i~l~d~pg~~ 286 (509)
....++|+|++|||||||+|.|++..........|.+. ..... ...+.++|+||..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~Dt~G~~ 73 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNI--KTLEHRGFKLNIWDVGGQK 73 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEE--EEEEETTEEEEEEEECCSH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccce--EEEEECCEEEEEEECCCCH
Confidence 34689999999999999999999865322222222211 11111 2357889999963
No 303
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.19 E-value=0.00038 Score=65.02 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=25.8
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCCc
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQKR 255 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~~ 255 (509)
...|.+++|+|+||||||||+++|++.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35689999999999999999999998764
No 304
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.18 E-value=0.00031 Score=63.46 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=21.6
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCC
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
..++|+|++|||||||+|.|++..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999999764
No 305
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.18 E-value=0.00026 Score=65.65 Aligned_cols=54 Identities=22% Similarity=0.279 Sum_probs=31.7
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeec-CeEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIIS-EKLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~-~~i~l~d~pg~~ 286 (509)
..++|+|++|||||||+|.|++..........|.+. ...... ..+.++|+||..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~--~~~~~~~~~l~i~Dt~G~~ 80 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS--EELTIAGMTFTTFDLGGHI 80 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC------CCCCCSC--EEEEETTEEEEEEEECC--
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCcee--EEEEECCEEEEEEECCCcH
Confidence 468899999999999999998754321122222221 111222 357889999954
No 306
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.18 E-value=0.00069 Score=59.71 Aligned_cols=72 Identities=18% Similarity=0.170 Sum_probs=46.1
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH-----hcCCcEEEEEeCCCCCCHHH--HHHHHHHHHhc-CCeEEEee
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREI-----DKYKRTLLLVNKADLLPFSV--RKRWAKYFKDH-DILFVFWS 148 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~-----~~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~-gi~~if~S 148 (509)
..+..+|++++|+|+.+|.++.. +..+...+ ..+.|+++|+||+||..... .+.-.++.... +..++.+|
T Consensus 70 ~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (167)
T 1c1y_A 70 LYMKNGQGFALVYSITAQSTFND--LQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESS 147 (167)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHT--HHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECB
T ss_pred HHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEec
Confidence 36778999999999998864332 23333222 23789999999999965321 11222333444 67777788
Q ss_pred hh
Q 010472 149 AK 150 (509)
Q Consensus 149 a~ 150 (509)
|+
T Consensus 148 a~ 149 (167)
T 1c1y_A 148 AK 149 (167)
T ss_dssp TT
T ss_pred CC
Confidence 75
No 307
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.18 E-value=0.00045 Score=61.81 Aligned_cols=71 Identities=20% Similarity=0.201 Sum_probs=47.4
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH-----hcCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEeehh
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLEAYAREI-----DKYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~-----~~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~Sa~ 150 (509)
.+..+|++++|+|+.++..+. .+..++.++ ..+.|++||+||+||.+... ......+....++.++.+||+
T Consensus 77 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 154 (181)
T 2fn4_A 77 YMRAGHGFLLVFAINDRQSFN--EVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAK 154 (181)
T ss_dssp HHHHCSEEEEEEETTCHHHHH--HHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTT
T ss_pred HHhhCCEEEEEEeCCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCC
Confidence 578899999999999876432 233333333 23689999999999976321 122233445567888888875
No 308
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.17 E-value=0.00029 Score=64.14 Aligned_cols=56 Identities=23% Similarity=0.314 Sum_probs=35.7
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCcccccceeee---cCeEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHFQTLII---SEKLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~~~~~~---~~~i~l~d~pg~~ 286 (509)
..++|+|++|||||||+|.|++... .......|.+........ ...+.++|+||..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 75 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSG
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCch
Confidence 5799999999999999999987643 222222232222222222 2357889999964
No 309
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.17 E-value=0.00036 Score=64.06 Aligned_cols=72 Identities=24% Similarity=0.232 Sum_probs=46.5
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH---h-cCCcEEEEEeCCCCCCHHH--HHHHHHHHHh-cCCeEEEeeh
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREI---D-KYKRTLLLVNKADLLPFSV--RKRWAKYFKD-HDILFVFWSA 149 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~---~-~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~-~gi~~if~Sa 149 (509)
..+..+|++|+|+|+.++..+. .+..++..+ . .+.|++||+||+||.+... .+...++... .++.++.+||
T Consensus 94 ~~~~~~d~iilV~D~~~~~s~~--~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA 171 (192)
T 2il1_A 94 AYYRSAKGIILVYDITKKETFD--DLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASA 171 (192)
T ss_dssp HHHHHCSEEEEEEETTCHHHHH--THHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBT
T ss_pred HHhcCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeC
Confidence 4678999999999999987543 233333333 2 3688999999999975321 1122223333 2677777887
Q ss_pred h
Q 010472 150 K 150 (509)
Q Consensus 150 ~ 150 (509)
+
T Consensus 172 ~ 172 (192)
T 2il1_A 172 K 172 (192)
T ss_dssp T
T ss_pred C
Confidence 5
No 310
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.17 E-value=0.0011 Score=68.96 Aligned_cols=79 Identities=14% Similarity=0.150 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH--hcCCcEEEEEeCCCCCCHHH----HHHHHHHHHh---c
Q 010472 70 DMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREI--DKYKRTLLLVNKADLLPFSV----RKRWAKYFKD---H 140 (509)
Q Consensus 70 e~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~--~~~K~~iLVlNK~DL~p~~~----~~~W~~yf~~---~ 140 (509)
++.+.+.+.+..+|++|+|+||.++.. .+...+.+..+ ...+++|+|+||+||.+.+. .+.+.+++.. .
T Consensus 95 ~f~~~~~~~~~~~D~~ilVvda~~g~~--~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~ 172 (410)
T 1kk1_A 95 ALMTTMLAGASLMDGAILVIAANEPCP--RPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAE 172 (410)
T ss_dssp HHHHHHHHCGGGCSEEEEEEETTSCSS--CHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTT
T ss_pred HHHHHHHhhhhhCCEEEEEEECCCCCC--ChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcC
Confidence 567777888899999999999998741 23333322222 23467899999999998653 3445566654 3
Q ss_pred CCeEEEeehh
Q 010472 141 DILFVFWSAK 150 (509)
Q Consensus 141 gi~~if~Sa~ 150 (509)
++.++..||+
T Consensus 173 ~~~~i~vSA~ 182 (410)
T 1kk1_A 173 NAPIIPISAL 182 (410)
T ss_dssp TCCEEECBTT
T ss_pred CCeEEEeeCC
Confidence 5677778875
No 311
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.17 E-value=0.0006 Score=63.02 Aligned_cols=72 Identities=25% Similarity=0.242 Sum_probs=48.7
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh----cCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEeehh
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREID----KYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~----~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~Sa~ 150 (509)
..+..+|++|+|+|+.+|..+ ..+..++..+. .+.|++||+||+||.+... .+.-.++....++.++++||+
T Consensus 76 ~~~~~~d~vilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (206)
T 2bcg_Y 76 SYYRGSHGIIIVYDVTDQESF--NGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSAL 153 (206)
T ss_dssp GGGTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTT
T ss_pred HhccCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCC
Confidence 357899999999999987643 23444444432 4678999999999986321 122233445667888888875
No 312
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.17 E-value=0.00016 Score=73.89 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=23.1
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcC
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQ 253 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~ 253 (509)
.+.+++|+|+||||||||+|.|+|.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999985
No 313
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.16 E-value=0.00053 Score=62.61 Aligned_cols=72 Identities=19% Similarity=0.182 Sum_probs=49.8
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh----cCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEeehh
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREID----KYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~----~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~Sa~ 150 (509)
..+..+|++|+|+|+.++..+. .+..++..+. .+.|++||+||+||.+... ......+....++.++.+||+
T Consensus 93 ~~~~~~d~vi~v~D~~~~~s~~--~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 170 (193)
T 2oil_A 93 AYYRGAVGALLVFDLTKHQTYA--VVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSAL 170 (193)
T ss_dssp HHHTTCCEEEEEEETTCHHHHH--THHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTT
T ss_pred HHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 4678999999999999876532 3445554442 3678999999999975321 122334455678888888875
No 314
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.15 E-value=0.00077 Score=59.74 Aligned_cols=71 Identities=15% Similarity=0.090 Sum_probs=47.5
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-----cCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEeehh
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLEAYAREID-----KYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-----~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~Sa~ 150 (509)
.+..+|++++|+|+.++.++. .+..++.++. .+.|++||+||+||..... .+.-.++....+..++.+||+
T Consensus 72 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (169)
T 3q85_A 72 CLQTGDAFLIVFSVTDRRSFS--KVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAA 149 (169)
T ss_dssp HHHHCSEEEEEEETTCHHHHH--THHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTT
T ss_pred hhccCCEEEEEEECCChHHHH--HHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCc
Confidence 467899999999999876433 3334444432 2689999999999974211 122234445567888888885
No 315
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.15 E-value=0.00042 Score=60.90 Aligned_cols=72 Identities=17% Similarity=0.143 Sum_probs=47.3
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH-----hcCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEeeh
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREI-----DKYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFWSA 149 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~-----~~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~Sa 149 (509)
..+..+|.+++|+|+.++.++. .+..+..++ ..+.|+++|+||+||.+... .....++....++.++.+||
T Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 147 (167)
T 1kao_A 70 LYIKNGQGFILVYSLVNQQSFQ--DIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSA 147 (167)
T ss_dssp HHHHHCSEEEEEEETTCHHHHH--HHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECT
T ss_pred HHhccCCEEEEEEeCCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecC
Confidence 3678999999999999876432 233333222 13789999999999975321 12223344455778888888
Q ss_pred h
Q 010472 150 K 150 (509)
Q Consensus 150 ~ 150 (509)
+
T Consensus 148 ~ 148 (167)
T 1kao_A 148 K 148 (167)
T ss_dssp T
T ss_pred C
Confidence 5
No 316
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.15 E-value=0.00064 Score=60.14 Aligned_cols=72 Identities=22% Similarity=0.219 Sum_probs=47.9
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH----hcCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEeehh
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREI----DKYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~----~~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~Sa~ 150 (509)
..+..+|++|+|+|+.+|.++. .+..++..+ .+..+++||+||+||.+... .+.-..+....++.++.+||+
T Consensus 74 ~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 151 (170)
T 1z0j_A 74 MYYRGSAAAIIVYDITKEETFS--TLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAK 151 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTT
T ss_pred hhCcCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 4688999999999999876432 334444433 24567899999999975321 112223344567788888875
No 317
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.15 E-value=0.00044 Score=63.72 Aligned_cols=71 Identities=27% Similarity=0.301 Sum_probs=47.6
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh--------cCCcEEEEEeCCCCCCHHH-HHHHHHHHH-hcCCeEEEe
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLEAYAREID--------KYKRTLLLVNKADLLPFSV-RKRWAKYFK-DHDILFVFW 147 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~--------~~K~~iLVlNK~DL~p~~~-~~~W~~yf~-~~gi~~if~ 147 (509)
.+..+|++|+|+|+.++..+. .+..++.++. .+.|++||+||+||..... .+...++.. ..++.++.+
T Consensus 77 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (207)
T 1vg8_A 77 FYRGADCCVLVFDVTAPNTFK--TLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFET 154 (207)
T ss_dssp GGTTCSEEEEEEETTCHHHHH--THHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEEC
T ss_pred HHhCCcEEEEEEECCCHHHHH--HHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEE
Confidence 578899999999999886533 3334433321 4679999999999985332 223334444 456777788
Q ss_pred ehh
Q 010472 148 SAK 150 (509)
Q Consensus 148 Sa~ 150 (509)
||+
T Consensus 155 Sa~ 157 (207)
T 1vg8_A 155 SAK 157 (207)
T ss_dssp BTT
T ss_pred eCC
Confidence 875
No 318
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.15 E-value=0.00022 Score=69.32 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=27.7
Q ss_pred CCCcEEEEEecCCCCHhHHHHHHh---cCCc--ceEEe
Q 010472 228 PKNVIVGFVGYPNVGKSSTINALV---GQKR--TGVTS 260 (509)
Q Consensus 228 ~~g~~vglvG~nGaGKSTLln~L~---G~~~--~g~~~ 260 (509)
.+|.+++|+|+|||||||++++|+ |... .|.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 468899999999999999999999 8755 45444
No 319
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.15 E-value=0.00084 Score=61.66 Aligned_cols=72 Identities=17% Similarity=0.132 Sum_probs=48.9
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH---h--cCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEeeh
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREI---D--KYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFWSA 149 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~---~--~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~Sa 149 (509)
..+..+|.+++|+|+.++..+. .+..++..+ . .+.|++||+||+||.+... .+...++....++.++.+||
T Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (206)
T 2bov_A 81 NYFRSGEGFLCVFSITEMESFA--ATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSA 158 (206)
T ss_dssp HHHHHCSEEEEEEETTCHHHHH--HHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECT
T ss_pred HHHhhCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeC
Confidence 3678899999999999876422 233333333 1 2789999999999975321 23344555566788888888
Q ss_pred h
Q 010472 150 K 150 (509)
Q Consensus 150 ~ 150 (509)
+
T Consensus 159 ~ 159 (206)
T 2bov_A 159 K 159 (206)
T ss_dssp T
T ss_pred C
Confidence 5
No 320
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.14 E-value=0.00033 Score=65.33 Aligned_cols=55 Identities=24% Similarity=0.300 Sum_probs=33.7
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCcccccceeeec---CeEEEEeCCCc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHFQTLIIS---EKLVLCDCPGL 285 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~~~~~~~---~~i~l~d~pg~ 285 (509)
..++|+|.+|||||||+|.|++... .......|.+......... -.+.++|+||.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 85 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 5789999999999999999987543 1111111211111111222 25788999995
No 321
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.13 E-value=0.0012 Score=70.44 Aligned_cols=78 Identities=17% Similarity=0.115 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH-hcCCcEEEEEeCCCCCCHHHH----HHHHHHHHhc----
Q 010472 70 DMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREI-DKYKRTLLLVNKADLLPFSVR----KRWAKYFKDH---- 140 (509)
Q Consensus 70 e~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~-~~~K~~iLVlNK~DL~p~~~~----~~W~~yf~~~---- 140 (509)
++.+.+.+.+..+|++|+|+||.++.. +...+.+..+ ..+.|.|+|+||+||++.+.. +...+++...
T Consensus 85 ~~~~~~~~~~~~aD~~ilVvda~~g~~---~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 161 (482)
T 1wb1_A 85 DLIRAVVSAADIIDLALIVVDAKEGPK---TQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLK 161 (482)
T ss_dssp HHHHHHHHHTTSCCEEEEEEETTTCSC---HHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGG
T ss_pred HHHHHHHHHHhhCCEEEEEEecCCCcc---HHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccc
Confidence 567778889999999999999998653 3333333222 236788999999999986433 3344556554
Q ss_pred CCeEEEeehh
Q 010472 141 DILFVFWSAK 150 (509)
Q Consensus 141 gi~~if~Sa~ 150 (509)
++.++.+||+
T Consensus 162 ~~~ii~vSA~ 171 (482)
T 1wb1_A 162 NSSIIPISAK 171 (482)
T ss_dssp GCCEEECCTT
T ss_pred cceEEEEECc
Confidence 4567778874
No 322
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.13 E-value=0.0013 Score=59.34 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=46.4
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH-----hcCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEeeh
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREI-----DKYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFWSA 149 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~-----~~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~Sa 149 (509)
..+..+|++++|+|+.++.++.. +..+...+ ..+.|+|||+||+||..... .+.-.++....++.++.+||
T Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 162 (183)
T 3kkq_A 85 QYMRTGDGFLIVYSVTDKASFEH--VDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSA 162 (183)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHT--HHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBC
T ss_pred HHHhcCCEEEEEEECCCHHHHHH--HHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEecc
Confidence 36788999999999999864332 33333332 24679999999999975211 11122333444677888887
Q ss_pred h
Q 010472 150 K 150 (509)
Q Consensus 150 ~ 150 (509)
+
T Consensus 163 ~ 163 (183)
T 3kkq_A 163 K 163 (183)
T ss_dssp S
T ss_pred C
Confidence 4
No 323
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.13 E-value=0.00044 Score=64.01 Aligned_cols=72 Identities=19% Similarity=0.203 Sum_probs=50.8
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH----hcCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEeehh
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREI----DKYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~----~~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~Sa~ 150 (509)
..+..+|++|+|+|+.++..+. .+..++..+ ..+.|++||+||+||.+... .....++....++.++.+||+
T Consensus 93 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~ 170 (200)
T 2o52_A 93 SYYRGAAGALLVYDITSRETYN--SLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSAL 170 (200)
T ss_dssp HHHTTCSEEEEEEETTCHHHHH--THHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTT
T ss_pred HHhccCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 4678999999999999887532 344444443 24688999999999964321 134455566778888888885
No 324
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.13 E-value=0.00017 Score=65.14 Aligned_cols=26 Identities=27% Similarity=0.174 Sum_probs=23.3
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKR 255 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~ 255 (509)
+.+++|+|+||||||||.++|++.+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999998653
No 325
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.13 E-value=0.00042 Score=60.77 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=20.9
Q ss_pred EEEEEecCCCCHhHHHHHHhcCC
Q 010472 232 IVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 232 ~vglvG~nGaGKSTLln~L~G~~ 254 (509)
.++++|.+|||||||+|.|++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998764
No 326
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.13 E-value=0.00014 Score=66.40 Aligned_cols=29 Identities=28% Similarity=0.311 Sum_probs=25.4
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCCc
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQKR 255 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~~ 255 (509)
+..|..++|+|+||+|||||+++|++...
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34588999999999999999999998753
No 327
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.13 E-value=0.00094 Score=60.24 Aligned_cols=71 Identities=23% Similarity=0.275 Sum_probs=46.8
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-----cCCcEEEEEeCCCCCCHHHHHHHH-HHHHhcCCeEEEeehh
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLEAYAREID-----KYKRTLLLVNKADLLPFSVRKRWA-KYFKDHDILFVFWSAK 150 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-----~~K~~iLVlNK~DL~p~~~~~~W~-~yf~~~gi~~if~Sa~ 150 (509)
.+..+|++++|+|+.++..+. .+..+...+. .+.|+++|+||+||.+........ ++....++.++.+||+
T Consensus 72 ~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 148 (189)
T 4dsu_A 72 YMRTGEGFLCVFAINNTKSFE--DIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAK 148 (189)
T ss_dssp HHHHCSEEEEEEETTCHHHHH--HHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTT
T ss_pred HHhcCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCC
Confidence 578899999999999876432 3333433332 368999999999997543222222 2333456778888875
No 328
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.13 E-value=0.00029 Score=62.45 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=21.5
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCC
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
..++|+|++|||||||+|.|++..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999999854
No 329
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.12 E-value=0.00061 Score=60.68 Aligned_cols=71 Identities=20% Similarity=0.112 Sum_probs=45.1
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-----cCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEeehh
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLEAYAREID-----KYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-----~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~Sa~ 150 (509)
.+..+|.+++|+|+.++.++. .+..+...+. .+.|+|||+||+||.+... .+.-..+....++.++.+||+
T Consensus 74 ~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 151 (175)
T 2nzj_A 74 CLQGGSAYVIVYSIADRGSFE--SASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSAT 151 (175)
T ss_dssp TTTSCSEEEEEEETTCHHHHH--HHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTT
T ss_pred hcccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecC
Confidence 456799999999999876432 3334443332 3689999999999976321 111223334457778888885
No 330
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.12 E-value=0.00072 Score=62.29 Aligned_cols=72 Identities=19% Similarity=0.241 Sum_probs=46.3
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh----cCCcEEEEEeCCCCCCHHH-------HHHHH-HHHHhcCCeE
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREID----KYKRTLLLVNKADLLPFSV-------RKRWA-KYFKDHDILF 144 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~----~~K~~iLVlNK~DL~p~~~-------~~~W~-~yf~~~gi~~ 144 (509)
..+..+|++|+|+|+.++..+. .+..++..+. .+.|+|||+||+||..... ..... ++....++.+
T Consensus 96 ~~~~~~d~iilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 173 (199)
T 2p5s_A 96 SYFRKADGVLLLYDVTCEKSFL--NIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALF 173 (199)
T ss_dssp HHHHHCSEEEEEEETTCHHHHH--THHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEE
T ss_pred HHHhhCCEEEEEEECCChHHHH--HHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeE
Confidence 4688999999999999887543 3344444332 3689999999999963211 11222 3334457777
Q ss_pred EEeehh
Q 010472 145 VFWSAK 150 (509)
Q Consensus 145 if~Sa~ 150 (509)
+.+||+
T Consensus 174 ~~~SA~ 179 (199)
T 2p5s_A 174 CETSAK 179 (199)
T ss_dssp EECCTT
T ss_pred EEeeCC
Confidence 778875
No 331
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.12 E-value=0.00027 Score=62.54 Aligned_cols=72 Identities=24% Similarity=0.268 Sum_probs=48.4
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH----hcCCcEEEEEeCCCCCCH----HHHHHHH-HHHHhcCCeEEEe
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREI----DKYKRTLLLVNKADLLPF----SVRKRWA-KYFKDHDILFVFW 147 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~----~~~K~~iLVlNK~DL~p~----~~~~~W~-~yf~~~gi~~if~ 147 (509)
..+..+|++++|+|+.+|..+ ..+..++..+ ..+.|+++|+||+||.+. ....... ++....++.++.+
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 148 (170)
T 1ek0_A 71 XYYRNAQAALVVYDVTKPQSF--IKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFET 148 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEEC
T ss_pred hhhccCcEEEEEEecCChHHH--HHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEE
Confidence 468899999999999998643 2344444443 246789999999999753 1112222 3334557778888
Q ss_pred ehh
Q 010472 148 SAK 150 (509)
Q Consensus 148 Sa~ 150 (509)
||+
T Consensus 149 Sa~ 151 (170)
T 1ek0_A 149 SAK 151 (170)
T ss_dssp CTT
T ss_pred eCC
Confidence 875
No 332
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.11 E-value=0.00029 Score=62.30 Aligned_cols=72 Identities=22% Similarity=0.226 Sum_probs=48.7
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH----hcCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEeehh
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREI----DKYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~----~~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~Sa~ 150 (509)
..+..+|++|+|+|+.+|..+ ..+..++..+ .++.+++||.||+||.+... .+...++....++.++.+||+
T Consensus 74 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 151 (170)
T 1r2q_A 74 MYYRGAQAAIVVYDITNEESF--ARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAK 151 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HhccCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCC
Confidence 467899999999999987642 2344444443 23677889999999975321 123344555677888888875
No 333
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.11 E-value=0.00058 Score=62.08 Aligned_cols=72 Identities=24% Similarity=0.266 Sum_probs=47.0
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-----cCCcEEEEEeCCCCCCHHH-HHHHHHHHHhcCCeEEEeehh
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREID-----KYKRTLLLVNKADLLPFSV-RKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-----~~K~~iLVlNK~DL~p~~~-~~~W~~yf~~~gi~~if~Sa~ 150 (509)
..+..+|++++|+|+.++..+. .+..+...+. .+.|++||+||+||.+... .+...++....++.++.+||+
T Consensus 88 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 165 (190)
T 3con_A 88 QYMRTGEGFLCVFAINNSKSFA--DINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAK 165 (190)
T ss_dssp --CTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred HhhCcCCEEEEEEECcCHHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCC
Confidence 4678999999999999876422 3444443332 2689999999999986321 122233444557778888875
No 334
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.11 E-value=0.00031 Score=63.21 Aligned_cols=71 Identities=14% Similarity=0.099 Sum_probs=45.6
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHH-HHHHHH---hcCCcEEEEEeCCCCCCHHHH------------HHHHHHHHhcC
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLE-AYAREI---DKYKRTLLLVNKADLLPFSVR------------KRWAKYFKDHD 141 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le-~~v~~~---~~~K~~iLVlNK~DL~p~~~~------------~~W~~yf~~~g 141 (509)
.+..+|++|+|+|+.+|.++. .+. .++..+ .++.|++||+||+||.+.... +.-.++....+
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 153 (182)
T 3bwd_D 76 SYRGADVFILAFSLISKASYE--NVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIG 153 (182)
T ss_dssp GGTTCSEEEEEEETTCHHHHH--HHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHT
T ss_pred hccCCCEEEEEEECCCHHHHH--HHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcC
Confidence 578899999999999876433 222 233333 247899999999999764321 11223333445
Q ss_pred C-eEEEeehh
Q 010472 142 I-LFVFWSAK 150 (509)
Q Consensus 142 i-~~if~Sa~ 150 (509)
. .++.+||+
T Consensus 154 ~~~~~~~Sa~ 163 (182)
T 3bwd_D 154 APAYIECSSK 163 (182)
T ss_dssp CSEEEECCTT
T ss_pred CCEEEEEECC
Confidence 4 67778875
No 335
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.11 E-value=0.0011 Score=69.64 Aligned_cols=83 Identities=23% Similarity=0.229 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-cC-CcEEEEEeCCCCCC--HH----HHHHHHHHHHhcC-
Q 010472 71 MWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREID-KY-KRTLLLVNKADLLP--FS----VRKRWAKYFKDHD- 141 (509)
Q Consensus 71 ~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-~~-K~~iLVlNK~DL~p--~~----~~~~W~~yf~~~g- 141 (509)
+-+.+.+.+..+|++|+|+||+++.. +...+++..+. .+ +++|+|+||+||.+ ++ ..+.+.+++...+
T Consensus 117 f~~~~~~~~~~aD~~ilVvDa~~g~~---~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~ 193 (434)
T 1zun_B 117 YTRNMATGASTCDLAIILVDARYGVQ---TQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAF 193 (434)
T ss_dssp GHHHHHHHHTTCSEEEEEEETTTCSC---HHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCc---HHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCC
Confidence 44556667899999999999999863 33333332221 23 46899999999986 32 2355667777777
Q ss_pred ----CeEEEeehhhhHHhhhccccc
Q 010472 142 ----ILFVFWSAKAASAALEGKAVS 162 (509)
Q Consensus 142 ----i~~if~Sa~~~~~~~~g~~l~ 162 (509)
+.++.+||+ +|.++.
T Consensus 194 ~~~~~~~i~vSA~------~g~gi~ 212 (434)
T 1zun_B 194 KPTTMAFVPMSAL------KGDNVV 212 (434)
T ss_dssp CCSEEEEEECCTT------TCTTTS
T ss_pred CccCceEEEEecc------CCCCcc
Confidence 566778875 566554
No 336
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.10 E-value=0.00034 Score=64.30 Aligned_cols=54 Identities=24% Similarity=0.300 Sum_probs=34.1
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeec-CeEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIIS-EKLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~-~~i~l~d~pg~~ 286 (509)
..++|+|++|||||||+|.|++..........|.+. ...... ..+.++|+||..
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~Dt~G~~ 78 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTS--EELAIGNIKFTTFDLGGHI 78 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEE--EEEEETTEEEEEEECCCSG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCe--EEEEECCEEEEEEECCCCH
Confidence 478999999999999999999754321111122111 111122 357889999974
No 337
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.10 E-value=0.00036 Score=63.16 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.6
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCC
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
..++|+|++|||||||+|.|++..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 578999999999999999999754
No 338
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.10 E-value=0.00026 Score=67.23 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=24.9
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhc
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVG 252 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G 252 (509)
+++|++++|+|+||+|||||++.|++
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 67899999999999999999999998
No 339
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.09 E-value=0.00035 Score=63.98 Aligned_cols=73 Identities=14% Similarity=0.143 Sum_probs=46.6
Q ss_pred HHhhCCEEEEEeeCCCCCCCCC--hhHHHHHHHHhcCCcEEEEEeCCCCCCHH---H-HHHHHHHHHhcCCe-EEEeehh
Q 010472 78 VLERSDLIVMVVDARDPLFYRC--PDLEAYAREIDKYKRTLLLVNKADLLPFS---V-RKRWAKYFKDHDIL-FVFWSAK 150 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~--~~le~~v~~~~~~K~~iLVlNK~DL~p~~---~-~~~W~~yf~~~gi~-~if~Sa~ 150 (509)
.+..+|++|+|+|+.++..+.. ..+...+.....+.|+|||+||+||.+.. . .+.-.++....+.. ++.+||+
T Consensus 91 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 170 (194)
T 3reg_A 91 SYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSV 170 (194)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTT
T ss_pred hccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecC
Confidence 6789999999999998864332 11222333333468999999999997521 1 12233344455666 7778875
No 340
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.09 E-value=0.00028 Score=63.62 Aligned_cols=73 Identities=14% Similarity=0.045 Sum_probs=46.5
Q ss_pred HHhhCCEEEEEeeCCCCCCCCCh--hHHHHHHHHhcCCcEEEEEeCCCCCCHHHH--------------HHHHHHHHhcC
Q 010472 78 VLERSDLIVMVVDARDPLFYRCP--DLEAYAREIDKYKRTLLLVNKADLLPFSVR--------------KRWAKYFKDHD 141 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~--~le~~v~~~~~~K~~iLVlNK~DL~p~~~~--------------~~W~~yf~~~g 141 (509)
.+..+|++|+|+|+.++..+... .+...+....++.|++||+||+||.+.... +...++....+
T Consensus 73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 152 (186)
T 1mh1_A 73 SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 152 (186)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcC
Confidence 57899999999999987643321 122222222347899999999999764321 12333444556
Q ss_pred C-eEEEeehh
Q 010472 142 I-LFVFWSAK 150 (509)
Q Consensus 142 i-~~if~Sa~ 150 (509)
. .++.+||+
T Consensus 153 ~~~~~~~Sa~ 162 (186)
T 1mh1_A 153 AVKYLECSAL 162 (186)
T ss_dssp CSEEEECCTT
T ss_pred CcEEEEecCC
Confidence 5 67777875
No 341
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.09 E-value=0.00013 Score=66.18 Aligned_cols=73 Identities=15% Similarity=0.145 Sum_probs=45.7
Q ss_pred HHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH-hcCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCeEEEeehh
Q 010472 73 RQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREI-DKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 73 rql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~-~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~gi~~if~Sa~ 150 (509)
+..|..+..+|++|+|+|+.++..+....+...+... ..+.|+|||+||+||..... ++....+..++.+||+
T Consensus 75 ~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----~~~~~~~~~~~~~SA~ 148 (172)
T 2gj8_A 75 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL-----GMSEVNGHALIRLSAR 148 (172)
T ss_dssp HHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----EEEEETTEEEEECCTT
T ss_pred HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh-----hhhhccCCceEEEeCC
Confidence 3456778999999999999998864322111222221 13689999999999954210 1111234556667775
No 342
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.07 E-value=0.0004 Score=61.27 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=21.2
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCC
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
..++|+|.+|||||||+|.|++..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998753
No 343
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.07 E-value=0.00037 Score=64.45 Aligned_cols=51 Identities=18% Similarity=0.133 Sum_probs=35.8
Q ss_pred HHhhCCEEEEEeeCCCCCCCCCh--hHHHHHHHHhcCCcEEEEEeCCCCCCHH
Q 010472 78 VLERSDLIVMVVDARDPLFYRCP--DLEAYAREIDKYKRTLLLVNKADLLPFS 128 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~--~le~~v~~~~~~K~~iLVlNK~DL~p~~ 128 (509)
.+..+|++|+|+|+.++..+... .+...+....++.|++||+||+||.+..
T Consensus 93 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 145 (201)
T 2gco_A 93 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDE 145 (201)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCH
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCc
Confidence 57899999999999987643221 1222233323478999999999998753
No 344
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.00052 Score=64.64 Aligned_cols=56 Identities=25% Similarity=0.253 Sum_probs=34.3
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcc-eEEeeCCcccccceeeec---CeEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRT-GVTSTPGKTKHFQTLIIS---EKLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~-g~~~~~G~t~~~~~~~~~---~~i~l~d~pg~~ 286 (509)
..++|+|.+|||||||+|.|++.... ......|.+......... ..+.++|+||.-
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 73 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTT
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCcc
Confidence 57899999999999999999986532 111222222211122222 257899999954
No 345
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.06 E-value=0.00096 Score=60.63 Aligned_cols=72 Identities=22% Similarity=0.251 Sum_probs=46.5
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH-----hcCCcEEEEEeCCCCCCHHHHHHHHHHHH-----hcCCeEEE
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREI-----DKYKRTLLLVNKADLLPFSVRKRWAKYFK-----DHDILFVF 146 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~-----~~~K~~iLVlNK~DL~p~~~~~~W~~yf~-----~~gi~~if 146 (509)
..+..+|++++|+|+.++..+. .+..++.++ ..+.|++||+||+||.+....+...+++. ..+..++.
T Consensus 79 ~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (181)
T 1fzq_A 79 SYFENTDILIYVIDSADRKRFE--ETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQS 156 (181)
T ss_dssp HHHTTCSEEEEEEETTCGGGHH--HHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHhCCCCEEEEEEECcCHHHHH--HHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEE
Confidence 4678999999999999876422 233444433 14689999999999986433333444432 22445566
Q ss_pred eehh
Q 010472 147 WSAK 150 (509)
Q Consensus 147 ~Sa~ 150 (509)
+||+
T Consensus 157 ~Sa~ 160 (181)
T 1fzq_A 157 CSAL 160 (181)
T ss_dssp CCTT
T ss_pred ccCC
Confidence 7774
No 346
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.06 E-value=0.00039 Score=63.29 Aligned_cols=56 Identities=23% Similarity=0.264 Sum_probs=35.9
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee-cCeEEEEeCCCcc
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII-SEKLVLCDCPGLV 286 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~-~~~i~l~d~pg~~ 286 (509)
+...++|+|.+|||||||+|.|++..........|.+ ...... ...+.++|+||..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~Dt~G~~ 77 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVN--LETLQYKNISFEVWDLGGQT 77 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCC--EEEEEETTEEEEEEEECCSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceE--EEEEEECCEEEEEEECCCCH
Confidence 3467999999999999999999765433222222211 111222 2357899999964
No 347
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.06 E-value=0.00029 Score=63.09 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=34.2
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcc-eEEeeCCcccccceeeec----CeEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRT-GVTSTPGKTKHFQTLIIS----EKLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~-g~~~~~G~t~~~~~~~~~----~~i~l~d~pg~~ 286 (509)
..++|+|.+|||||||+|.|++.... ......|.+......... ..+.++|+||.-
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 67 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCC
T ss_pred EEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCc
Confidence 57899999999999999999975431 111111111111111121 357899999964
No 348
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.06 E-value=0.00051 Score=62.42 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=22.5
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKR 255 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~ 255 (509)
..++|+|.+|||||||+|.|.|...
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 5789999999999999999998754
No 349
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.06 E-value=0.00057 Score=64.01 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=44.5
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHH-HHHHHH---hcCCcEEEEEeCCCCCCHHHHH--------------HHHHHHHh
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLE-AYAREI---DKYKRTLLLVNKADLLPFSVRK--------------RWAKYFKD 139 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le-~~v~~~---~~~K~~iLVlNK~DL~p~~~~~--------------~W~~yf~~ 139 (509)
.+..+|++|+|+|+.++..+. .+. .++..+ .++.|+|||+||+||.+..... ...++.+.
T Consensus 102 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 179 (214)
T 2j1l_A 102 FYPDASVLLLCFDVTSPNSFD--NIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARS 179 (214)
T ss_dssp ---CEEEEEEEEETTCHHHHH--HHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred HhccCCEEEEEEECcCHHHHH--HHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHh
Confidence 578999999999999876432 221 233332 3478999999999998754221 12334445
Q ss_pred cCC-eEEEeehh
Q 010472 140 HDI-LFVFWSAK 150 (509)
Q Consensus 140 ~gi-~~if~Sa~ 150 (509)
.+. .++.+||+
T Consensus 180 ~~~~~~~~~SA~ 191 (214)
T 2j1l_A 180 VGAVAYLECSAR 191 (214)
T ss_dssp TTCSEEEECBTT
T ss_pred cCCCEEEEecCC
Confidence 565 67777875
No 350
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.06 E-value=0.00046 Score=61.19 Aligned_cols=71 Identities=18% Similarity=0.142 Sum_probs=48.0
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH----hcCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEeehh
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLEAYAREI----DKYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~----~~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~Sa~ 150 (509)
.+..+|++++|+|+.++.++. .+..++..+ ..+.|+++|+||+||.+... .+...++....++.++.+||+
T Consensus 75 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 151 (170)
T 1z08_A 75 YYRDSNGAILVYDITDEDSFQ--KVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAK 151 (170)
T ss_dssp SSTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTT
T ss_pred HhccCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCC
Confidence 568999999999999876422 334444333 24688999999999975311 122334455667888888875
No 351
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.05 E-value=0.00099 Score=61.29 Aligned_cols=74 Identities=15% Similarity=0.169 Sum_probs=47.6
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH---hcCCcEEEEEeCCCCCCHHHH--------HHHHHHHH-----hc
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREI---DKYKRTLLLVNKADLLPFSVR--------KRWAKYFK-----DH 140 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~---~~~K~~iLVlNK~DL~p~~~~--------~~W~~yf~-----~~ 140 (509)
..+..+|++|+|+|+.++.......+..++.++ .++.|++||.||+||++.+.+ ....+.|. ..
T Consensus 91 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 170 (196)
T 3llu_A 91 MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKL 170 (196)
T ss_dssp HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcC
Confidence 577889999999999997321112334444443 347899999999999985321 11222332 34
Q ss_pred CCeEEEeehh
Q 010472 141 DILFVFWSAK 150 (509)
Q Consensus 141 gi~~if~Sa~ 150 (509)
++.++.+||+
T Consensus 171 ~~~~~e~Sa~ 180 (196)
T 3llu_A 171 HLSFYLTSIY 180 (196)
T ss_dssp CEEEEEECTT
T ss_pred CcceEEEEec
Confidence 5667777875
No 352
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.04 E-value=0.00057 Score=61.54 Aligned_cols=55 Identities=25% Similarity=0.276 Sum_probs=33.2
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCcccccceeeec---CeEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHFQTLIIS---EKLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~~~~~~~---~~i~l~d~pg~~ 286 (509)
..++|+|.+|||||||+|.|++... .......+.+. ....... -.+.++|+||..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~ 65 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQD 65 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCch
Confidence 4789999999999999999985432 11111112111 1111122 246789999964
No 353
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.04 E-value=0.00032 Score=64.23 Aligned_cols=56 Identities=23% Similarity=0.232 Sum_probs=36.8
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCcccccceeee---cCeEEEEeCCCc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHFQTLII---SEKLVLCDCPGL 285 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~~~~~~---~~~i~l~d~pg~ 285 (509)
-..++|+|.+|||||||+|.|++... .......|.+........ ...+.++|+||.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 82 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ 82 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCCh
Confidence 45799999999999999999998653 223333344333222222 124788999984
No 354
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.04 E-value=0.00017 Score=72.66 Aligned_cols=24 Identities=13% Similarity=0.455 Sum_probs=22.5
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCC
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
.+++|+|+||||||||||.|+|..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 589999999999999999999985
No 355
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.03 E-value=0.00029 Score=66.11 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=38.5
Q ss_pred CcEEEEEecCCCCHhHHHHH-HhcCCcceEEeeCCcccccceeeec---CeEEEEeCCCcc
Q 010472 230 NVIVGFVGYPNVGKSSTINA-LVGQKRTGVTSTPGKTKHFQTLIIS---EKLVLCDCPGLV 286 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~-L~G~~~~g~~~~~G~t~~~~~~~~~---~~i~l~d~pg~~ 286 (509)
...++|+|.+|||||||+|. +.|..........|.+......... ..+.++|+||.-
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 75 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChH
Confidence 45799999999999999998 5554444445555655433332222 257889999954
No 356
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.03 E-value=0.00051 Score=61.81 Aligned_cols=25 Identities=28% Similarity=0.181 Sum_probs=22.1
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCC
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
...++|+|.+|||||||+|.|++..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 3578999999999999999999754
No 357
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.03 E-value=0.00047 Score=70.45 Aligned_cols=22 Identities=36% Similarity=0.635 Sum_probs=21.0
Q ss_pred EEEEEecCCCCHhHHHHHHhcC
Q 010472 232 IVGFVGYPNVGKSSTINALVGQ 253 (509)
Q Consensus 232 ~vglvG~nGaGKSTLln~L~G~ 253 (509)
.++|||.+|||||||||+|+|.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 8999999999999999999994
No 358
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.03 E-value=0.00057 Score=62.46 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=35.0
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHH-HHHHHH---hcCCcEEEEEeCCCCCCH
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLE-AYAREI---DKYKRTLLLVNKADLLPF 127 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le-~~v~~~---~~~K~~iLVlNK~DL~p~ 127 (509)
.+..+|++|+|+|+.+|.++.. +. .++..+ .++.|++||+||+||.+.
T Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 86 SYPMTDVFLICFSVVNPASFQN--VKEEWVPELKEYAPNVPFLLIGTQIDLRDD 137 (194)
T ss_dssp GCTTCSEEEEEEETTCHHHHHH--HHHTHHHHHHHHSTTCCEEEEEECTTSTTC
T ss_pred hcCCCCEEEEEEECCCHHHHHH--HHHHHHHHHHHhCCCCCEEEEEEChhhccc
Confidence 5788999999999998864332 22 233333 347899999999999764
No 359
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.03 E-value=0.00052 Score=61.40 Aligned_cols=25 Identities=24% Similarity=0.183 Sum_probs=22.1
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCC
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
...++|+|.+|||||||+|.|++..
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3578999999999999999999864
No 360
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.03 E-value=0.0014 Score=58.48 Aligned_cols=48 Identities=21% Similarity=0.281 Sum_probs=35.2
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH-hcCCcEEEEEeCCCCCCH
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREI-DKYKRTLLLVNKADLLPF 127 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~-~~~K~~iLVlNK~DL~p~ 127 (509)
+.+..+|++|+|+|+.++.. +....++..+ ..+.|++||+||+||.+.
T Consensus 74 ~~~~~~d~~i~v~d~~~~~~---~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 74 RGAQVTDIVILVVAADDGVM---PQTVEAINHAKAANVPIIVAINKMDKPEA 122 (178)
T ss_dssp SSCCCCCEEEEEEETTCCCC---HHHHHHHHHHGGGSCCEEEEEETTTSSCS
T ss_pred HHHhhCCEEEEEEECCCCCc---HHHHHHHHHHHhCCCCEEEEEECccCCcC
Confidence 35678999999999998753 2323344443 347899999999999863
No 361
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.03 E-value=0.00093 Score=59.02 Aligned_cols=71 Identities=18% Similarity=0.107 Sum_probs=44.1
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-----cCCcEEEEEeCCCCCCHHH-HHHH-HHHHHhcCCeEEEeehh
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLEAYAREID-----KYKRTLLLVNKADLLPFSV-RKRW-AKYFKDHDILFVFWSAK 150 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-----~~K~~iLVlNK~DL~p~~~-~~~W-~~yf~~~gi~~if~Sa~ 150 (509)
.+..+|++++|+|+.+|.++. .+..+...+. .+.|++||+||+||.+... .... ..+....++.++.+||+
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 146 (166)
T 3q72_A 69 CMAMGDAYVIVYSVTDKGSFE--KASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAA 146 (166)
T ss_dssp ----CCEEEEEEETTCHHHHH--HHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGG
T ss_pred hhhhCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccC
Confidence 578999999999999886432 3344444332 3689999999999975321 1122 23334567788888885
No 362
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.03 E-value=0.0006 Score=63.21 Aligned_cols=57 Identities=26% Similarity=0.239 Sum_probs=33.6
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCcccccceeeec---CeEEEEeCCCcc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHFQTLIIS---EKLVLCDCPGLV 286 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~~~~~~~---~~i~l~d~pg~~ 286 (509)
...++|+|.+|||||||+|.|++... .......|.+......... ..+.++|+||.-
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCG
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 35799999999999999999987543 1111111111111122222 257899999963
No 363
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.02 E-value=0.00039 Score=62.87 Aligned_cols=72 Identities=17% Similarity=0.157 Sum_probs=49.8
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH----hcCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEeehh
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREI----DKYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~----~~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~Sa~ 150 (509)
..+..+|++|+|+|+.++..+. .+..++..+ ..+.|++||+||+||.+... .....++....++.++.+||+
T Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 155 (186)
T 2bme_A 78 SYYRGAAGALLVYDITSRETYN--ALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSAL 155 (186)
T ss_dssp TTSTTCSEEEEEEETTCHHHHH--THHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HHHhcCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCC
Confidence 3678999999999999877543 233444332 24689999999999964321 133445566678888888875
No 364
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.02 E-value=0.0012 Score=59.10 Aligned_cols=69 Identities=23% Similarity=0.217 Sum_probs=45.4
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh--------cCCcEEEEEeCCCCCCH------HHHHHHHHHHHhcCCe
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLEAYAREID--------KYKRTLLLVNKADLLPF------SVRKRWAKYFKDHDIL 143 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~--------~~K~~iLVlNK~DL~p~------~~~~~W~~yf~~~gi~ 143 (509)
.+..+|++|+|+|+.++..+. .+..++.++. .+.|++||+||+||.+. +....|.+. ..++.
T Consensus 78 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~--~~~~~ 153 (182)
T 1ky3_A 78 FYRGADCCVLVYDVTNASSFE--NIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS--LGDIP 153 (182)
T ss_dssp CSTTCCEEEEEEETTCHHHHH--THHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH--TTSCC
T ss_pred HhhcCCEEEEEEECCChHHHH--HHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHh--cCCCe
Confidence 578999999999999886432 3334443331 56799999999999643 222233221 24567
Q ss_pred EEEeehh
Q 010472 144 FVFWSAK 150 (509)
Q Consensus 144 ~if~Sa~ 150 (509)
++.+||+
T Consensus 154 ~~~~Sa~ 160 (182)
T 1ky3_A 154 LFLTSAK 160 (182)
T ss_dssp EEEEBTT
T ss_pred EEEEecC
Confidence 7778875
No 365
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.02 E-value=0.00055 Score=63.83 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=22.2
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKR 255 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~ 255 (509)
..++|+|.+|||||||+|.|++...
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCC
Confidence 5789999999999999999998643
No 366
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.02 E-value=0.00055 Score=62.25 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=21.7
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCC
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
..++|+|.+|||||||+|.|++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 578999999999999999999764
No 367
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.01 E-value=0.00048 Score=63.30 Aligned_cols=25 Identities=28% Similarity=0.181 Sum_probs=22.0
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCC
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
...++|+|.+|||||||+|.|++..
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC
Confidence 3578999999999999999998754
No 368
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.00 E-value=0.00051 Score=60.60 Aligned_cols=53 Identities=19% Similarity=0.178 Sum_probs=33.1
Q ss_pred EEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee-cCeEEEEeCCCcc
Q 010472 232 IVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII-SEKLVLCDCPGLV 286 (509)
Q Consensus 232 ~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~-~~~i~l~d~pg~~ 286 (509)
.++|+|.+|||||||+|.+++..........|. ....... ...+.++|+||.-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~Dt~G~~ 55 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF--NVETVEYKNISFTVWDVGGQD 55 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSC--CEEEEECSSCEEEEEECCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCcccCcCce--eEEEEEECCEEEEEEEcCCCh
Confidence 478999999999999999986443221111111 1111111 2468899999973
No 369
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.99 E-value=0.00085 Score=61.69 Aligned_cols=56 Identities=20% Similarity=0.180 Sum_probs=34.5
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee-cCeEEEEeCCCcc
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII-SEKLVLCDCPGLV 286 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~-~~~i~l~d~pg~~ 286 (509)
+...++|+|++|||||||+|.|++..........|.. ...... ...+.++|+||.-
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~ 84 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNICFTVWDVGGQD 84 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEE--EEEEEETTEEEEEEECC---
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccccCCcCcee--EEEEEECCEEEEEEECCCCH
Confidence 3568999999999999999999875543333222311 111111 2357889999974
No 370
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.99 E-value=0.0004 Score=63.36 Aligned_cols=56 Identities=27% Similarity=0.288 Sum_probs=35.5
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCc--ceEEeeCCcccccceeee-cCeEEEEeCCCcc
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKR--TGVTSTPGKTKHFQTLII-SEKLVLCDCPGLV 286 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~--~g~~~~~G~t~~~~~~~~-~~~i~l~d~pg~~ 286 (509)
....++|+|.+|||||||+|.|++... .......|... ..... ...+.++|+||.-
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~Dt~G~~ 78 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSI--EKFKSSSLSFTVFDMSGQG 78 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEE--EEEECSSCEEEEEEECCST
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeE--EEEEECCEEEEEEECCCCH
Confidence 346899999999999999999998752 21111122111 11111 2468899999954
No 371
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=96.98 E-value=0.0015 Score=69.67 Aligned_cols=87 Identities=17% Similarity=0.178 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCCCC----ChhHHHHHHHHh--cCCcEEEEEeCCCCCC--HHH----HHHHHHHH
Q 010472 70 DMWRQLWRVLERSDLIVMVVDARDPLFYR----CPDLEAYAREID--KYKRTLLLVNKADLLP--FSV----RKRWAKYF 137 (509)
Q Consensus 70 e~wrql~rvie~sDvVl~VvDaR~Pl~~~----~~~le~~v~~~~--~~K~~iLVlNK~DL~p--~~~----~~~W~~yf 137 (509)
++.+.....+..+|++|+|+||.++.+.. .+...+++..+. ..+++|+|+||+||++ ... .+...+++
T Consensus 123 ~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l 202 (483)
T 3p26_A 123 DFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYL 202 (483)
T ss_dssp GGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHHHHHHHHHHH
Confidence 35677778899999999999999985432 233433332222 2367999999999987 222 23334455
Q ss_pred HhcC-----CeEEEeehhhhHHhhhccccc
Q 010472 138 KDHD-----ILFVFWSAKAASAALEGKAVS 162 (509)
Q Consensus 138 ~~~g-----i~~if~Sa~~~~~~~~g~~l~ 162 (509)
...| +.++.+||+ .|.++.
T Consensus 203 ~~~g~~~~~~~~i~iSA~------~g~gi~ 226 (483)
T 3p26_A 203 VDIGFFEDNINWVPISGF------SGEGVY 226 (483)
T ss_dssp HHHTCCGGGEEEEECCSS------SCTTSS
T ss_pred HHcCCCcccceEEEEeee------cCCCcc
Confidence 4443 456778875 565554
No 372
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.96 E-value=0.00034 Score=65.35 Aligned_cols=57 Identities=23% Similarity=0.305 Sum_probs=35.7
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCc-ceEEeeCCcccccceeeec----CeEEEEeCCCcc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKR-TGVTSTPGKTKHFQTLIIS----EKLVLCDCPGLV 286 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~-~g~~~~~G~t~~~~~~~~~----~~i~l~d~pg~~ 286 (509)
...++|+|.+|||||||+|.|++... .......|.+......... ..+.++|+||..
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 72 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCch
Confidence 35789999999999999999997543 2222223322211111111 247889999964
No 373
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.96 E-value=0.00052 Score=62.72 Aligned_cols=56 Identities=23% Similarity=0.269 Sum_probs=35.6
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCcceE--EeeCCcccccceeee-cCeEEEEeCCCcc
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKRTGV--TSTPGKTKHFQTLII-SEKLVLCDCPGLV 286 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~~g~--~~~~G~t~~~~~~~~-~~~i~l~d~pg~~ 286 (509)
..-.++|+|.+|||||||+|.|++.....+ ....|.+.. .... ...+.++|+||.-
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~ 74 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFEKGRVAFTVFDMGGAK 74 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEEETTEEEEEEEECCSG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEEeCCEEEEEEECCCCH
Confidence 446789999999999999999998654321 223332211 1111 2357899999974
No 374
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.96 E-value=0.00099 Score=59.51 Aligned_cols=72 Identities=19% Similarity=0.231 Sum_probs=46.8
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh--------cCCcEEEEEeCCCCCCHHH-HHHHHHHHH-hcCCeEEE
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREID--------KYKRTLLLVNKADLLPFSV-RKRWAKYFK-DHDILFVF 146 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~--------~~K~~iLVlNK~DL~p~~~-~~~W~~yf~-~~gi~~if 146 (509)
..+..+|++++|+|+.++..+. .+..+..++. .+.|+++|+||+||..... .+...++.. ..++.++.
T Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 152 (177)
T 1wms_A 75 PFYRGSDCCLLTFSVDDSQSFQ--NLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFE 152 (177)
T ss_dssp GGGTTCSEEEEEEETTCHHHHH--THHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEE
T ss_pred HHHhcCCEEEEEEECcCHHHHH--HHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEE
Confidence 4678899999999999887433 2333333331 4679999999999974322 122233333 34667777
Q ss_pred eehh
Q 010472 147 WSAK 150 (509)
Q Consensus 147 ~Sa~ 150 (509)
+||+
T Consensus 153 ~Sa~ 156 (177)
T 1wms_A 153 TSAK 156 (177)
T ss_dssp CCTT
T ss_pred EeCC
Confidence 8875
No 375
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=96.96 E-value=0.0033 Score=66.10 Aligned_cols=87 Identities=18% Similarity=0.223 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCCC----CChhHHHHHHHH-hcCCc-EEEEEeCCCCCCH--------HHHHHHHH
Q 010472 70 DMWRQLWRVLERSDLIVMVVDARDPLFY----RCPDLEAYAREI-DKYKR-TLLLVNKADLLPF--------SVRKRWAK 135 (509)
Q Consensus 70 e~wrql~rvie~sDvVl~VvDaR~Pl~~----~~~~le~~v~~~-~~~K~-~iLVlNK~DL~p~--------~~~~~W~~ 135 (509)
++.+.+...+..+|++|+|+||+++.+. ..+...+.+..+ ..+.+ +|+|+||+||.+. +..+...+
T Consensus 107 ~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~ 186 (439)
T 3j2k_7 107 SFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVP 186 (439)
T ss_pred HHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHH
Confidence 5677778889999999999999998642 113333333222 23556 8999999999742 12233445
Q ss_pred HHHhcCC------eEEEeehhhhHHhhhccccc
Q 010472 136 YFKDHDI------LFVFWSAKAASAALEGKAVS 162 (509)
Q Consensus 136 yf~~~gi------~~if~Sa~~~~~~~~g~~l~ 162 (509)
++.+.|+ .++.+||+ +|.++.
T Consensus 187 ~l~~~g~~~~~~~~~i~iSA~------~G~ni~ 213 (439)
T 3j2k_7 187 FLKKVGFNPKKDIHFMPCSGL------TGANLK 213 (439)
T ss_pred HHHHhcccccCCeeEEEeecc------CCcccc
Confidence 5555443 56778885 566554
No 376
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.96 E-value=0.0015 Score=68.05 Aligned_cols=79 Identities=15% Similarity=0.181 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH--hcCCcEEEEEeCCCCCCHH----HHHHHHHHHHh---c
Q 010472 70 DMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREI--DKYKRTLLLVNKADLLPFS----VRKRWAKYFKD---H 140 (509)
Q Consensus 70 e~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~--~~~K~~iLVlNK~DL~p~~----~~~~W~~yf~~---~ 140 (509)
++.+...+.+..+|++|+|+||.++.. .++..+++..+ ...+++|+|+||+||++.+ ..+...+++.. .
T Consensus 93 ~f~~~~~~~~~~~D~~ilVvda~~g~~--~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~ 170 (408)
T 1s0u_A 93 TLMATMLSGASLMDGAILVIAANEPCP--QPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAE 170 (408)
T ss_dssp HHHHHHHTTCSCCSEEEEEEETTSCSS--CHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTT
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCC--CchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCC
Confidence 455666677788999999999998751 23333333222 2346899999999998753 23445556554 3
Q ss_pred CCeEEEeehh
Q 010472 141 DILFVFWSAK 150 (509)
Q Consensus 141 gi~~if~Sa~ 150 (509)
++.++.+||+
T Consensus 171 ~~~~i~vSA~ 180 (408)
T 1s0u_A 171 NAPIIPISAH 180 (408)
T ss_dssp TCCEEEC---
T ss_pred CCeEEEeeCC
Confidence 5677778875
No 377
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.95 E-value=0.001 Score=62.47 Aligned_cols=69 Identities=25% Similarity=0.259 Sum_probs=46.4
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH---hcCCcEEEEEeCCCCCC-----------------HHHHHHHHHHH
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLEAYAREI---DKYKRTLLLVNKADLLP-----------------FSVRKRWAKYF 137 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~---~~~K~~iLVlNK~DL~p-----------------~~~~~~W~~yf 137 (509)
.+..+|++|+|+|+.++.++.. .+..++..+ .++.|+|||.||+||.+ .+....|++
T Consensus 95 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-- 171 (214)
T 3q3j_B 95 CYSDSDAVLLCFDISRPETVDS-ALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAK-- 171 (214)
T ss_dssp GCTTCSEEEEEEETTCTHHHHH-HHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH--
T ss_pred HcCCCeEEEEEEECcCHHHHHH-HHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHH--
Confidence 5788999999999998875332 123333333 34789999999999954 333334443
Q ss_pred HhcCC-eEEEeehh
Q 010472 138 KDHDI-LFVFWSAK 150 (509)
Q Consensus 138 ~~~gi-~~if~Sa~ 150 (509)
..++ .++.+||+
T Consensus 172 -~~~~~~~~e~SA~ 184 (214)
T 3q3j_B 172 -QLGAEIYLEGSAF 184 (214)
T ss_dssp -HHTCSEEEECCTT
T ss_pred -HcCCCEEEEeccC
Confidence 4466 67778875
No 378
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.94 E-value=0.00086 Score=59.27 Aligned_cols=73 Identities=16% Similarity=0.094 Sum_probs=45.5
Q ss_pred HHhhCCEEEEEeeCCCCCCCCC-hhHHHHHHHHh---cCCcEEEEEeCCCCCCHHHH--HHHHHHHHhcCCeEEEeehh
Q 010472 78 VLERSDLIVMVVDARDPLFYRC-PDLEAYAREID---KYKRTLLLVNKADLLPFSVR--KRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~-~~le~~v~~~~---~~K~~iLVlNK~DL~p~~~~--~~W~~yf~~~gi~~if~Sa~ 150 (509)
.+..+|++++|+|+.+|..+.. ..+...+.+.. ++.|+++|+||+||.+.... ..-..+....++.++.+||+
T Consensus 71 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 149 (172)
T 2erx_A 71 SISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAK 149 (172)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTT
T ss_pred hcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCC
Confidence 6788999999999998764322 11112222222 36899999999999754211 11122334456777778875
No 379
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.94 E-value=0.00092 Score=67.40 Aligned_cols=32 Identities=16% Similarity=0.016 Sum_probs=22.4
Q ss_pred EEEEecCCCCHhHHHHHHhc-CCc--ceEEeeCCc
Q 010472 233 VGFVGYPNVGKSSTINALVG-QKR--TGVTSTPGK 264 (509)
Q Consensus 233 vglvG~nGaGKSTLln~L~G-~~~--~g~~~~~G~ 264 (509)
+.|+||||+|||||+++|++ +.. .|.+.+.|.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 88999999999999999999 443 465665554
No 380
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.93 E-value=0.00055 Score=74.25 Aligned_cols=54 Identities=26% Similarity=0.366 Sum_probs=0.0
Q ss_pred EEEEEecCCCCHhHHHHHHhcCCcce--EEeeCCcccccceeeecC----------------------------------
Q 010472 232 IVGFVGYPNVGKSSTINALVGQKRTG--VTSTPGKTKHFQTLIISE---------------------------------- 275 (509)
Q Consensus 232 ~vglvG~nGaGKSTLln~L~G~~~~g--~~~~~G~t~~~~~~~~~~---------------------------------- 275 (509)
.++|+|.+|||||||+|.|+|....+ +...++++.......-..
T Consensus 67 ~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~~~ 146 (550)
T 2qpt_A 67 MVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMCA 146 (550)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccceEE
Q ss_pred --------eEEEEeCCCc
Q 010472 276 --------KLVLCDCPGL 285 (509)
Q Consensus 276 --------~i~l~d~pg~ 285 (509)
.+.++||||+
T Consensus 147 ~~~~~ll~~l~lIDTPG~ 164 (550)
T 2qpt_A 147 QLPNQVLESISIIDTPGI 164 (550)
T ss_dssp ECCCHHHHHCEEEECCCB
T ss_pred eccccccCCEEEEECcCC
No 381
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.93 E-value=0.00046 Score=64.12 Aligned_cols=73 Identities=14% Similarity=0.075 Sum_probs=46.4
Q ss_pred HHhhCCEEEEEeeCCCCCCCCCh--hHHHHHHHHhcCCcEEEEEeCCCCCCHHHH--------------HHHHHHHHhcC
Q 010472 78 VLERSDLIVMVVDARDPLFYRCP--DLEAYAREIDKYKRTLLLVNKADLLPFSVR--------------KRWAKYFKDHD 141 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~--~le~~v~~~~~~K~~iLVlNK~DL~p~~~~--------------~~W~~yf~~~g 141 (509)
.+..+|++|+|+|+.++..+... .+...+....+++|+|||+||+||.+.... .....+....+
T Consensus 98 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 177 (204)
T 4gzl_A 98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 177 (204)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcC
Confidence 67899999999999988754321 122222222347899999999999765431 12233444455
Q ss_pred Ce-EEEeehh
Q 010472 142 IL-FVFWSAK 150 (509)
Q Consensus 142 i~-~if~Sa~ 150 (509)
.. ++.+||+
T Consensus 178 ~~~~~~~SA~ 187 (204)
T 4gzl_A 178 AVKYLECSAL 187 (204)
T ss_dssp CSEEEECCTT
T ss_pred CcEEEEeeCC
Confidence 43 6667775
No 382
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.92 E-value=0.00025 Score=72.44 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=22.0
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCC
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
-.++|||.+|||||||+|.|+|..
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999965
No 383
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.92 E-value=0.00031 Score=67.71 Aligned_cols=36 Identities=36% Similarity=0.584 Sum_probs=29.5
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCc
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGK 264 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~ 264 (509)
++.| ++|+|+||+|||||+++|++....+.+.+.|.
T Consensus 48 ~~~g--~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~ 83 (254)
T 1ixz_A 48 IPKG--VLLVGPPGVGKTHLARAVAGEARVPFITASGS 83 (254)
T ss_dssp CCSE--EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCe--EEEECCCCCCHHHHHHHHHHHhCCCEEEeeHH
Confidence 4556 88999999999999999999877666666553
No 384
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.91 E-value=0.0024 Score=58.85 Aligned_cols=71 Identities=15% Similarity=0.090 Sum_probs=47.8
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-----cCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEeehh
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLEAYAREID-----KYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-----~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~Sa~ 150 (509)
.+..+|++|+|.|+.++.++. .+..++.++. .+.|+|||.||+||.+... .+...++....++.++.+||+
T Consensus 93 ~~~~~d~~ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~ 170 (195)
T 3cbq_A 93 CLQTGDAFLIVFSVTDRRSFS--KVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAA 170 (195)
T ss_dssp HHHHCSEEEEEEETTCHHHHH--THHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTT
T ss_pred hhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCC
Confidence 467899999999999877543 3444544442 3689999999999975321 122233444557777778885
No 385
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.90 E-value=0.00064 Score=63.14 Aligned_cols=51 Identities=18% Similarity=0.154 Sum_probs=35.3
Q ss_pred HHhhCCEEEEEeeCCCCCCCCCh--hHHHHHHHHhcCCcEEEEEeCCCCCCHH
Q 010472 78 VLERSDLIVMVVDARDPLFYRCP--DLEAYAREIDKYKRTLLLVNKADLLPFS 128 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~--~le~~v~~~~~~K~~iLVlNK~DL~p~~ 128 (509)
.+..+|++|+|+|+.++..+... .+...+....++.|++||+||+||.+..
T Consensus 93 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 145 (207)
T 2fv8_A 93 SYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE 145 (207)
T ss_dssp GCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCH
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccc
Confidence 57899999999999887643211 1122222223478999999999998653
No 386
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.90 E-value=0.00095 Score=61.96 Aligned_cols=55 Identities=18% Similarity=0.140 Sum_probs=33.1
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcceE-EeeCCcccccceeeec---CeEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRTGV-TSTPGKTKHFQTLIIS---EKLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~g~-~~~~G~t~~~~~~~~~---~~i~l~d~pg~~ 286 (509)
..++|+|.+|||||||+|.|++...... ....+.... ...... ..+.++|+||..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~ 84 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQE 84 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCT
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcH
Confidence 4789999999999999999998653211 111111110 111122 247889999964
No 387
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=96.90 E-value=0.0017 Score=69.18 Aligned_cols=72 Identities=15% Similarity=0.060 Sum_probs=48.0
Q ss_pred HHHHhhCCEEEEEeeCCCCCCCCCh-hHHHHHHHHhcCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-CCeEEEeehh
Q 010472 76 WRVLERSDLIVMVVDARDPLFYRCP-DLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDH-DILFVFWSAK 150 (509)
Q Consensus 76 ~rvie~sDvVl~VvDaR~Pl~~~~~-~le~~v~~~~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~-gi~~if~Sa~ 150 (509)
+..+..+|+||+|+|+.+|..+..- ....++..+ .++|+|+|+||+||.+...... +.|.+. ...++.+||+
T Consensus 307 ~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~~~piIvV~NK~Dl~~~~~~~~--~~l~~~~~~~~i~vSAk 380 (476)
T 3gee_A 307 RMKMAEADLILYLLDLGTERLDDELTEIRELKAAH-PAAKFLTVANKLDRAANADALI--RAIADGTGTEVIGISAL 380 (476)
T ss_dssp -CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-TTSEEEEEEECTTSCTTTHHHH--HHHHHHHTSCEEECBTT
T ss_pred HhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc-CCCCEEEEEECcCCCCccchhH--HHHHhcCCCceEEEEEC
Confidence 4457889999999999998853211 333444444 3789999999999987654422 223332 3567778885
No 388
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.90 E-value=0.00082 Score=60.59 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=22.0
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCC
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
...++|+|.+|||||||+|.|++..
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4578999999999999999999753
No 389
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.88 E-value=0.0013 Score=60.37 Aligned_cols=72 Identities=21% Similarity=0.121 Sum_probs=46.7
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH-----hcCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEeeh
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREI-----DKYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFWSA 149 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~-----~~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~Sa 149 (509)
..+..+|++|+|+|+.+|.++. .+..+...+ ..+.|+|||+||+||.+... .+.-.++....++.++.+||
T Consensus 94 ~~~~~~d~iilv~D~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 171 (196)
T 2atv_A 94 GHMRWGEGFVLVYDITDRGSFE--EVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSA 171 (196)
T ss_dssp HHHHHCSEEEEEEETTCHHHHH--THHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCT
T ss_pred hhhccCCEEEEEEECcCHHHHH--HHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECC
Confidence 4678999999999999877533 233333222 24788999999999975311 11122333345777777887
Q ss_pred h
Q 010472 150 K 150 (509)
Q Consensus 150 ~ 150 (509)
+
T Consensus 172 ~ 172 (196)
T 2atv_A 172 C 172 (196)
T ss_dssp T
T ss_pred C
Confidence 5
No 390
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.88 E-value=0.0019 Score=58.91 Aligned_cols=73 Identities=16% Similarity=0.118 Sum_probs=46.6
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChh-HHHHHHHHh---cCCcEEEEEeCCCCCCHHHHHH-HHHHHHhcCCeEEEeehh
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPD-LEAYAREID---KYKRTLLLVNKADLLPFSVRKR-WAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~-le~~v~~~~---~~K~~iLVlNK~DL~p~~~~~~-W~~yf~~~gi~~if~Sa~ 150 (509)
.+..+|++|+|+|+.++..+.... ....+.++. .+.|+|||+||+||.+...... ...+....++.++.+||+
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (199)
T 2gf0_A 76 SISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAK 153 (199)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTT
T ss_pred hhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecC
Confidence 678899999999999876533211 222233322 3679999999999986432212 223334456777778875
No 391
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.87 E-value=0.0027 Score=57.93 Aligned_cols=68 Identities=13% Similarity=0.106 Sum_probs=46.5
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-----cCCcEEEEEeCCCCC-------CHHHHHHHHHHHHhcC-CeE
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLEAYAREID-----KYKRTLLLVNKADLL-------PFSVRKRWAKYFKDHD-ILF 144 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-----~~K~~iLVlNK~DL~-------p~~~~~~W~~yf~~~g-i~~ 144 (509)
.+..+|++++|+|+.++.++. .+..++.++. .+.|++||.||+||. +.+....| ....+ ..+
T Consensus 82 ~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~---~~~~~~~~~ 156 (184)
T 3ihw_A 82 FAAWVDAVVFVFSLEDEISFQ--TVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKL---STDLKRCTY 156 (184)
T ss_dssp HHHHCSEEEEEEETTCHHHHH--HHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHH---HHHTTTCEE
T ss_pred eecCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHH---HHHcCCCeE
Confidence 677899999999999877433 3344555542 357899999999993 33333334 34444 677
Q ss_pred EEeehh
Q 010472 145 VFWSAK 150 (509)
Q Consensus 145 if~Sa~ 150 (509)
+.+||+
T Consensus 157 ~e~Sa~ 162 (184)
T 3ihw_A 157 YETCAT 162 (184)
T ss_dssp EEEBTT
T ss_pred EEecCC
Confidence 778885
No 392
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.87 E-value=0.00066 Score=63.07 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=46.3
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHH-HHHHHH---hcCCcEEEEEeCCCCCCHHH----------HHHHHHHHHhcCC-
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLE-AYAREI---DKYKRTLLLVNKADLLPFSV----------RKRWAKYFKDHDI- 142 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le-~~v~~~---~~~K~~iLVlNK~DL~p~~~----------~~~W~~yf~~~gi- 142 (509)
.+..+|++|+|+|+.+|..+. .+. .++..+ .++.|+|||+||+||.+... .+.-.++....+.
T Consensus 77 ~~~~~d~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 154 (212)
T 2j0v_A 77 SYRGADIFVLAFSLISKASYE--NVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAA 154 (212)
T ss_dssp GGTTCSEEEEEEETTCHHHHH--HHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCS
T ss_pred hccCCCEEEEEEECCCHHHHH--HHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCc
Confidence 578999999999999876433 221 333333 34789999999999975432 1222233344564
Q ss_pred eEEEeehh
Q 010472 143 LFVFWSAK 150 (509)
Q Consensus 143 ~~if~Sa~ 150 (509)
.++.+||+
T Consensus 155 ~~~~~Sa~ 162 (212)
T 2j0v_A 155 AYIECSSK 162 (212)
T ss_dssp EEEECCTT
T ss_pred eEEEccCC
Confidence 67778875
No 393
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.87 E-value=0.001 Score=60.96 Aligned_cols=59 Identities=20% Similarity=0.155 Sum_probs=39.3
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH-----hcCCcEEEEEeCCCCCCHHHHHHHHHHHH
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLEAYAREI-----DKYKRTLLLVNKADLLPFSVRKRWAKYFK 138 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~-----~~~K~~iLVlNK~DL~p~~~~~~W~~yf~ 138 (509)
.+..+|++++|+|+.++..+. .+..++.++ ..+.|++||+||+||......+...+++.
T Consensus 87 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~ 150 (190)
T 1m2o_B 87 YFPEVNGIVFLVDAADPERFD--EARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALG 150 (190)
T ss_dssp GCTTCCEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTT
T ss_pred HHhcCCEEEEEEECCChHHHH--HHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhC
Confidence 568999999999999886432 233444333 14689999999999975222333444443
No 394
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=96.87 E-value=0.00064 Score=75.80 Aligned_cols=27 Identities=30% Similarity=0.349 Sum_probs=24.0
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCc
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKR 255 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~ 255 (509)
.+..++|+|.+|||||||+|+|+|...
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~ 94 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENL 94 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356899999999999999999999754
No 395
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.91 E-value=0.00016 Score=66.95 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=35.4
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH---hcCCcEEEEEeCCCCCCH
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLEAYAREI---DKYKRTLLLVNKADLLPF 127 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~---~~~K~~iLVlNK~DL~p~ 127 (509)
.+..+|++|+|+|+.++..+.... ..++..+ .++.|++||+||+||.+.
T Consensus 98 ~~~~~d~iilv~D~~~~~s~~~~~-~~~~~~l~~~~~~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 98 SYPQTDVFLICFSLVSPASFENVR-AKWYPEVRHHCPNTPIILVGTKLDLRDD 149 (204)
Confidence 578899999999999987554321 1233222 236899999999999864
No 396
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.86 E-value=0.00087 Score=61.05 Aligned_cols=72 Identities=22% Similarity=0.212 Sum_probs=47.8
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH-----hcCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEeeh
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREI-----DKYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFWSA 149 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~-----~~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~Sa 149 (509)
..+..+|++|+|+|+.++.++. .+..++.++ ..+.|+|||+||+||.+... .+.-.++....++.++.+||
T Consensus 89 ~~~~~~d~iilv~D~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 166 (189)
T 1z06_A 89 HYYRNVHAVVFVYDMTNMASFH--SLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSA 166 (189)
T ss_dssp HHHTTCCEEEEEEETTCHHHHH--THHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCS
T ss_pred HHhcCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeC
Confidence 3678999999999999876543 233333332 24689999999999965321 11222333456778888887
Q ss_pred h
Q 010472 150 K 150 (509)
Q Consensus 150 ~ 150 (509)
+
T Consensus 167 ~ 167 (189)
T 1z06_A 167 K 167 (189)
T ss_dssp S
T ss_pred C
Confidence 5
No 397
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.00052 Score=64.66 Aligned_cols=71 Identities=18% Similarity=0.206 Sum_probs=46.4
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh----cCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEeehh
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLEAYAREID----KYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~----~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~Sa~ 150 (509)
.+..+|++|+|+|+.++..+. .+..++.++. .+.|++||+||+||.+... .....++....++.++.+||+
T Consensus 82 ~~~~~d~vilV~D~~~~~s~~--~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 158 (223)
T 3cpj_B 82 YYRGAVGALIVYDISKSSSYE--NCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSAL 158 (223)
T ss_dssp GTTTCCEEEEEEC-CCHHHHH--HHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC
T ss_pred HhccCCEEEEEEeCCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 578899999999999886432 3444444432 3688999999999975311 122334455667888878875
No 398
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.85 E-value=0.00066 Score=61.99 Aligned_cols=56 Identities=18% Similarity=0.266 Sum_probs=35.1
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCcc-eEEeeCCcccccceeee-cCeEEEEeCCCcc
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKRT-GVTSTPGKTKHFQTLII-SEKLVLCDCPGLV 286 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~~-g~~~~~G~t~~~~~~~~-~~~i~l~d~pg~~ 286 (509)
+...++|+|.+|||||||+|.|++.... ......|.+. ..... ...+.++|+||..
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~Dt~G~~ 78 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM--RKITKGNVTIKLWDIGGQP 78 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEE--EEEEETTEEEEEEEECCSH
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeE--EEEEeCCEEEEEEECCCCH
Confidence 3467999999999999999999975431 1111222211 11111 2357889999953
No 399
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.85 E-value=0.00048 Score=70.69 Aligned_cols=53 Identities=25% Similarity=0.307 Sum_probs=0.0
Q ss_pred EEEEecCCCCHhHHHHHHhcCCcc-------------eEEeeCCcccccceeeecCeEEEEeCCCc
Q 010472 233 VGFVGYPNVGKSSTINALVGQKRT-------------GVTSTPGKTKHFQTLIISEKLVLCDCPGL 285 (509)
Q Consensus 233 vglvG~nGaGKSTLln~L~G~~~~-------------g~~~~~G~t~~~~~~~~~~~i~l~d~pg~ 285 (509)
++|||++|+|||||+|.|.|.... .++.+...+...+.......+.++|+||.
T Consensus 40 I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~ 105 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGY 105 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC----
T ss_pred EEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccc
No 400
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.85 E-value=0.0016 Score=60.27 Aligned_cols=47 Identities=23% Similarity=0.124 Sum_probs=34.8
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH-----hcCCcEEEEEeCCCCCC
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLEAYAREI-----DKYKRTLLLVNKADLLP 126 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~-----~~~K~~iLVlNK~DL~p 126 (509)
.+..+|++|+|+|+.++..+. .+..++.++ ..+.|++||+||+||..
T Consensus 89 ~~~~~d~~i~v~D~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 89 YLPAINGIVFLVDCADHERLL--ESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp GGGGCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred HHhcCCEEEEEEECCCHHHHH--HHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 578999999999999886422 333444433 14689999999999974
No 401
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.84 E-value=0.00086 Score=62.54 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=35.0
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcceE--EeeCCcccccceeeecCeEEEEeCCCcc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRTGV--TSTPGKTKHFQTLIISEKLVLCDCPGLV 286 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~g~--~~~~G~t~~~~~~~~~~~i~l~d~pg~~ 286 (509)
...++|+|++|||||||+|.|++...... ...+..+... ....+.++|+||.-
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~ 66 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHV 66 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG----GGSSCEEEECCCCG
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe----eCceEEEEECCCcH
Confidence 35789999999999999999998653211 1111111111 23467899999974
No 402
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.84 E-value=0.00081 Score=60.48 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=21.3
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCC
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
..++|+|.+|||||||++.|++..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 578999999999999999998653
No 403
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.82 E-value=0.0012 Score=60.83 Aligned_cols=57 Identities=18% Similarity=0.124 Sum_probs=35.1
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceee----ecCeEEEEeCCCcc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLI----ISEKLVLCDCPGLV 286 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~----~~~~i~l~d~pg~~ 286 (509)
...++|+|.+|||||||++.+.+..........+.+....... ....+.++|++|.-
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 80 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQM 80 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCH
Confidence 4579999999999999999999865422111011111111111 12358899999964
No 404
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.82 E-value=0.00084 Score=61.94 Aligned_cols=71 Identities=20% Similarity=0.139 Sum_probs=47.1
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-----cCCcEEEEEeCCCCCCHHHH--HHHHHHHHhcCCeEEEeehh
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLEAYAREID-----KYKRTLLLVNKADLLPFSVR--KRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-----~~K~~iLVlNK~DL~p~~~~--~~W~~yf~~~gi~~if~Sa~ 150 (509)
.+..+|++|+|+|+.++..+. .+..+...+. .+.|+|||+||+||.+.... ..-.++....+..++.+||+
T Consensus 92 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 169 (201)
T 3oes_A 92 FIIGVHGYVLVYSVTSLHSFQ--VIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSAR 169 (201)
T ss_dssp GTTTCCEEEEEEETTCHHHHH--HHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTT
T ss_pred HHhcCCEEEEEEeCCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCC
Confidence 577899999999999876432 3445554442 36799999999999753211 11223334457778888885
No 405
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.82 E-value=0.00043 Score=67.87 Aligned_cols=36 Identities=36% Similarity=0.584 Sum_probs=29.7
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCc
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGK 264 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~ 264 (509)
++.| ++|+|+||+|||||+++|++....+.+.+.+.
T Consensus 72 ~~~g--vll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~ 107 (278)
T 1iy2_A 72 IPKG--VLLVGPPGVGKTHLARAVAGEARVPFITASGS 107 (278)
T ss_dssp CCCE--EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCe--EEEECCCcChHHHHHHHHHHHcCCCEEEecHH
Confidence 4556 88999999999999999999877776666553
No 406
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.81 E-value=0.0008 Score=61.43 Aligned_cols=25 Identities=32% Similarity=0.287 Sum_probs=22.1
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCC
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
...++|+|.+|||||||+|.|++..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCC
Confidence 4679999999999999999998753
No 407
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.81 E-value=0.0011 Score=60.88 Aligned_cols=47 Identities=15% Similarity=0.318 Sum_probs=34.7
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHH-HHHHHH---hcCCcEEEEEeCCCCCC
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLE-AYAREI---DKYKRTLLLVNKADLLP 126 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le-~~v~~~---~~~K~~iLVlNK~DL~p 126 (509)
.+..+|++|+|+|+.++.++. .+. .++..+ .++.|+|||+||+||.+
T Consensus 88 ~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 88 CYTNTDIFLLCFSVVSPSSFQ--NVSEKWVPEIRCHCPKAPIILVGTQSDLRE 138 (201)
T ss_dssp GGTTCSEEEEEEETTCHHHHH--HHHHTHHHHHHHHCSSSCEEEEEECGGGGG
T ss_pred hcCCCcEEEEEEECCCHHHHH--HHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 578999999999999876533 222 233333 34789999999999975
No 408
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.81 E-value=0.0012 Score=61.81 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=21.1
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCC
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
...++|+|.+|||||||+|.|++..
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~ 58 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGA 58 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC--
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3579999999999999999999754
No 409
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.81 E-value=0.005 Score=64.37 Aligned_cols=73 Identities=27% Similarity=0.366 Sum_probs=52.4
Q ss_pred HHHHHHhhCCEEEEEeeCC-CCCCCCChhHHHHHHHH------hcCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCeEEE
Q 010472 74 QLWRVLERSDLIVMVVDAR-DPLFYRCPDLEAYAREI------DKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVF 146 (509)
Q Consensus 74 ql~rvie~sDvVl~VvDaR-~Pl~~~~~~le~~v~~~------~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~gi~~if 146 (509)
+..+.++++|.+|.|+|+. +|.. ++....+++ ...+|.|||+||+|+........+.+++...+..+++
T Consensus 228 ~fl~~~era~~lL~vvDls~~~~~----~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~ 303 (416)
T 1udx_A 228 EFLRHIARTRVLLYVLDAADEPLK----TLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLP 303 (416)
T ss_dssp HHHHHHTSSSEEEEEEETTSCHHH----HHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred HHHHHHHHHHhhhEEeCCccCCHH----HHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEE
Confidence 3445689999999999994 4442 222222221 1268999999999999886666777888777888888
Q ss_pred eehh
Q 010472 147 WSAK 150 (509)
Q Consensus 147 ~Sa~ 150 (509)
+||.
T Consensus 304 iSA~ 307 (416)
T 1udx_A 304 VSAL 307 (416)
T ss_dssp CCTT
T ss_pred EECC
Confidence 8885
No 410
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.79 E-value=0.00033 Score=63.27 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=10.4
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCC
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
...++|+|.+|||||||+|.|++..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEEEECCCCC-------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3579999999999999999998753
No 411
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.79 E-value=0.0009 Score=60.06 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=21.9
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCC
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
...++|+|.+|||||||++.+++..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998754
No 412
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.79 E-value=0.00051 Score=63.13 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=5.5
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcC
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQ 253 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~ 253 (509)
...++|+|.+|||||||+|.|++.
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999986
No 413
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=96.79 E-value=0.0004 Score=70.87 Aligned_cols=54 Identities=30% Similarity=0.471 Sum_probs=38.2
Q ss_pred EEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccce--eeec--CeEEEEeCCCcc
Q 010472 232 IVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQT--LIIS--EKLVLCDCPGLV 286 (509)
Q Consensus 232 ~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~--~~~~--~~i~l~d~pg~~ 286 (509)
.|+|||.+|||||||||.|++... ....++.+|..... ..+. ..+.++|+||+.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i 217 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKP-KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLI 217 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECC-EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCC-ccccCCccccCceEEEEEeCCCceEEEecCCCCc
Confidence 589999999999999999987542 23445556654332 2222 468899999975
No 414
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.78 E-value=0.00074 Score=61.81 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.3
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCC
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
...++|+|.+|||||||+|.|++..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 4679999999999999999999864
No 415
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.78 E-value=0.00055 Score=69.20 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=23.8
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCc
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKR 255 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~ 255 (509)
...++||+|+||||||||+++|.++..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 346999999999999999999998764
No 416
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.77 E-value=0.00081 Score=62.64 Aligned_cols=72 Identities=24% Similarity=0.290 Sum_probs=47.5
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH----hcCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEeehh
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREI----DKYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~----~~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~Sa~ 150 (509)
..+..+|++|+|+|+.++..+. .+..++.++ ..+.|+|||+||+||..... .+.-.++....++.++.+||+
T Consensus 94 ~~~~~~d~~i~v~D~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 171 (201)
T 2ew1_A 94 SYYRSANALILTYDITCEESFR--CLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAK 171 (201)
T ss_dssp GGSTTCSEEEEEEETTCHHHHH--THHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTT
T ss_pred HHHhcCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 4678999999999999886543 233444433 23678999999999974211 122223334557778888875
No 417
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.77 E-value=0.0011 Score=61.66 Aligned_cols=54 Identities=24% Similarity=0.256 Sum_probs=34.5
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee----cCeEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII----SEKLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~----~~~i~l~d~pg~~ 286 (509)
..++|+|.+|||||||++.|++...... .+.++.......+ ...+.++|+||..
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 65 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQYRDT--QTSITDSSAIYKVNNNRGNSLTLIDLPGHE 65 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCCCB--CCCCSCEEEEEECSSTTCCEEEEEECCCCH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcccc--cCCcceeeEEEEecCCCccEEEEEECCCCh
Confidence 5789999999999999999997543211 1111111111222 2358899999964
No 418
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.77 E-value=0.00081 Score=70.97 Aligned_cols=23 Identities=26% Similarity=0.262 Sum_probs=21.4
Q ss_pred cEEEEEecCCCCHhHHHHHHhcC
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQ 253 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~ 253 (509)
.+|+|+|++++|||||||.|.|.
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhhh
Confidence 58999999999999999999975
No 419
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.76 E-value=0.0014 Score=60.53 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=33.6
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCccccc-ceeeec---CeEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHF-QTLIIS---EKLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~-~~~~~~---~~i~l~d~pg~~ 286 (509)
..++|+|.+|||||||+|.+++...... ..+..+... ...... ..+.++|+||.-
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 84 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQFPEV-YVPTVFENYIADIEVDGKQVELALWDTAGQE 84 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSS-CCCSSCCCCEEEEEETTEEEEEEEECCCCSG
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCcc-cCCcccceEEEEEEECCEEEEEEEEECCCch
Confidence 4789999999999999999998543111 111111111 111222 257889999953
No 420
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.74 E-value=0.00087 Score=61.85 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=23.4
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCc
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKR 255 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~ 255 (509)
....++|+|.+|||||||+|.|++...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~ 49 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEF 49 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCC
Confidence 456799999999999999999998653
No 421
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.72 E-value=0.0007 Score=62.91 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=23.9
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCC
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
+.+|.+++|+|++||||||+.+.|++.+
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 5678899999999999999999998754
No 422
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.72 E-value=0.00073 Score=61.36 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=21.6
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCC
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
..++|+|++|||||||+|.|++..
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 578999999999999999998754
No 423
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.72 E-value=0.00075 Score=63.56 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=22.5
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCC
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
+.+++|+|+|||||||+.+.|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998754
No 424
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.71 E-value=0.0015 Score=59.86 Aligned_cols=57 Identities=19% Similarity=0.159 Sum_probs=34.6
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcceE-EeeCCcccccceeee---cCeEEEEeCCCccC
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRTGV-TSTPGKTKHFQTLII---SEKLVLCDCPGLVF 287 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~g~-~~~~G~t~~~~~~~~---~~~i~l~d~pg~~~ 287 (509)
...++|+|.+|||||||+|.|++...... ....+... ...... ...+.++|+||...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~ 88 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED 88 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc
Confidence 46799999999999999999997643111 00011110 011111 12478899999764
No 425
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.71 E-value=0.00074 Score=69.79 Aligned_cols=29 Identities=28% Similarity=0.228 Sum_probs=26.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCC
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
.+++|.+++|+||||+|||||+++|+|..
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 46789999999999999999999999864
No 426
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.69 E-value=0.00076 Score=62.74 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=20.6
Q ss_pred cEEEEEecCCCCHhHHHHHHhc
Q 010472 231 VIVGFVGYPNVGKSSTINALVG 252 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G 252 (509)
.++||+|+|||||||+.++|++
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999998
No 427
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=96.69 E-value=0.0023 Score=66.43 Aligned_cols=79 Identities=15% Similarity=0.114 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-cCCc-EEEEEeCCCCCC-HHHH----HHHHHHHHhcC-
Q 010472 70 DMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREID-KYKR-TLLLVNKADLLP-FSVR----KRWAKYFKDHD- 141 (509)
Q Consensus 70 e~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-~~K~-~iLVlNK~DL~p-~~~~----~~W~~yf~~~g- 141 (509)
++.+.+.+.+..+|++|+|+|+.++.. +...+++..+. .+.| +|+|+||+||.+ .+.. ....+++...+
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~~---~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGPM---PQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 163 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCC---HHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCc---HHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence 356777788999999999999999764 34444443332 3567 789999999994 3322 23445565555
Q ss_pred ----CeEEEeehhh
Q 010472 142 ----ILFVFWSAKA 151 (509)
Q Consensus 142 ----i~~if~Sa~~ 151 (509)
+.+++.||+.
T Consensus 164 ~~~~~~~i~~SA~~ 177 (405)
T 2c78_A 164 PGDEVPVIRGSALL 177 (405)
T ss_dssp CTTTSCEEECCHHH
T ss_pred cccCCCEEEccHHH
Confidence 5677888864
No 428
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.68 E-value=0.0015 Score=59.93 Aligned_cols=56 Identities=23% Similarity=0.264 Sum_probs=32.1
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCccccc--ceeeecC---eEEEEeCCCcc
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHF--QTLIISE---KLVLCDCPGLV 286 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~--~~~~~~~---~i~l~d~pg~~ 286 (509)
....++|+|.+|||||||++.|++.... ..+..++... ....... .+.++|+||.-
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 79 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNGYP--TEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQD 79 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCST
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCcccceeEEEEEECCEEEEEEEEECCCCH
Confidence 4568999999999999999999976421 1111111111 1111222 46689999974
No 429
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.68 E-value=0.0029 Score=57.68 Aligned_cols=72 Identities=19% Similarity=0.194 Sum_probs=47.5
Q ss_pred HHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-------cCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEE
Q 010472 76 WRVLERSDLIVMVVDARDPLFYRCPDLEAYAREID-------KYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVF 146 (509)
Q Consensus 76 ~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-------~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if 146 (509)
.+.+..+|++|+|.|+.++.++. .+..++.++. .+.|+|||+||+||..... .+.-.++....++.++.
T Consensus 86 ~~~~~~~~~~ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 163 (187)
T 3c5c_A 86 ERYLNWAHAFLVVYSVDSRQSFD--SSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFE 163 (187)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEE
T ss_pred HHHHhhCCEEEEEEECCCHHHHH--HHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEE
Confidence 45788999999999999876432 3334443331 4789999999999954211 12223334455777777
Q ss_pred eeh
Q 010472 147 WSA 149 (509)
Q Consensus 147 ~Sa 149 (509)
+||
T Consensus 164 ~Sa 166 (187)
T 3c5c_A 164 VSA 166 (187)
T ss_dssp CCS
T ss_pred Eee
Confidence 887
No 430
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.66 E-value=0.0022 Score=64.00 Aligned_cols=72 Identities=19% Similarity=0.208 Sum_probs=49.3
Q ss_pred HHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-cCCcEEEEEeCCCCCC-HHHHHHHHHHHHh-cCC-eEEEeehh
Q 010472 75 LWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREID-KYKRTLLLVNKADLLP-FSVRKRWAKYFKD-HDI-LFVFWSAK 150 (509)
Q Consensus 75 l~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-~~K~~iLVlNK~DL~p-~~~~~~W~~yf~~-~gi-~~if~Sa~ 150 (509)
.++.++.+|++++|+|+.+ + .+..+.++..+. .++|+|||+||+|+.. +.....+.+.|.+ .+. .++.+||+
T Consensus 82 ~~~~l~~~D~vl~Vvd~~~-~---~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~ 157 (301)
T 1ega_A 82 ASSSIGDVELVIFVVEGTR-W---TPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAE 157 (301)
T ss_dssp TTSCCCCEEEEEEEEETTC-C---CHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred HHHHHhcCCEEEEEEeCCC-C---CHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECC
Confidence 4567889999999999977 3 233333333332 3789999999999998 5555555655544 454 46667875
No 431
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.66 E-value=0.00086 Score=62.56 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=24.9
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCC
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
..+|.+++|+|+||||||||.+.|+...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4578899999999999999999998755
No 432
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.64 E-value=0.0013 Score=60.98 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCC
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
....++|+|.+|||||||++.+++..
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 34689999999999999999998643
No 433
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.64 E-value=0.0021 Score=58.66 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=21.6
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCC
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
...++|+|.+|||||||+|.+++..
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999887654
No 434
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=96.63 E-value=0.0033 Score=62.70 Aligned_cols=72 Identities=14% Similarity=0.293 Sum_probs=48.3
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHH---HHHH---hcCCcEEEEEeCCCCCCHHHHH--------HHHHHHHhcC-
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAY---AREI---DKYKRTLLLVNKADLLPFSVRK--------RWAKYFKDHD- 141 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~---v~~~---~~~K~~iLVlNK~DL~p~~~~~--------~W~~yf~~~g- 141 (509)
..+..+|++|+|+|+.++.++. ++..| +.++ .++.|++||+||+||...+.+. .-.++....|
T Consensus 76 ~~~~~ad~vi~V~D~t~~~s~~--~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~ 153 (307)
T 3r7w_A 76 HIFQMVQVLIHVFDVESTEVLK--DIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGF 153 (307)
T ss_dssp HHHTTCSEEEEEEETTCSCHHH--HHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHhccCCEEEEEEECCChhhHH--HHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCC
Confidence 3568999999999999987543 23222 3332 3478999999999999844332 2233444555
Q ss_pred --CeEEEeehh
Q 010472 142 --ILFVFWSAK 150 (509)
Q Consensus 142 --i~~if~Sa~ 150 (509)
+.++..||+
T Consensus 154 ~~~~~~~tSa~ 164 (307)
T 3r7w_A 154 PNLIGFPTSIW 164 (307)
T ss_dssp CSCEEEECCTT
T ss_pred CCeEEEEeeec
Confidence 566777875
No 435
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=96.63 E-value=0.0012 Score=69.27 Aligned_cols=72 Identities=19% Similarity=0.204 Sum_probs=48.3
Q ss_pred HHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-cCCcEEEEEeCCCCCCHHHHHHHHHHHH-hcCCeEEEeehh
Q 010472 73 RQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREID-KYKRTLLLVNKADLLPFSVRKRWAKYFK-DHDILFVFWSAK 150 (509)
Q Consensus 73 rql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-~~K~~iLVlNK~DL~p~~~~~~W~~yf~-~~gi~~if~Sa~ 150 (509)
+.....+..+|++|+|+|+ . .......++..+. .++|+|+|+||+|+...... ...+.+. ..++.++.+||+
T Consensus 105 ~~~~~~l~~aD~vllVvD~-~----~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g~~v~~vSAk 178 (423)
T 3qq5_A 105 EKARRVFYRADCGILVTDS-A----PTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE-ELKGLYESRYEAKVLLVSAL 178 (423)
T ss_dssp HHHHHHHTSCSEEEEECSS-S----CCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT-HHHHHSSCCTTCCCCCCSSC
T ss_pred HHHHHHHhcCCEEEEEEeC-C----ChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH-HHHHHHHHHcCCCEEEEECC
Confidence 3456688999999999999 2 2234445555443 37899999999999876433 2333332 346677777875
No 436
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.62 E-value=0.0024 Score=59.27 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=33.8
Q ss_pred HHH-HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH-------hcCCcEEEEEeCCCCCCHH
Q 010472 75 LWR-VLERSDLIVMVVDARDPLFYRCPDLEAYAREI-------DKYKRTLLLVNKADLLPFS 128 (509)
Q Consensus 75 l~r-vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~-------~~~K~~iLVlNK~DL~p~~ 128 (509)
+|. .+..+|++|+|+|+.++.... .....++..+ ..+.|++||+||+||.+..
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 71 LLDRFKSSARAVVFVVDSAAFQREV-KDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp HHHHHGGGEEEEEEEEETTTHHHHH-HHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred HHHHHHhhCCEEEEEEECCCcCHHH-HHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 444 478999999999998732111 1111222211 2367999999999998653
No 437
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.62 E-value=0.0024 Score=59.48 Aligned_cols=47 Identities=23% Similarity=0.307 Sum_probs=34.2
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhH-HHHHHHH---hcCCcEEEEEeCCCCCC
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDL-EAYAREI---DKYKRTLLLVNKADLLP 126 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~l-e~~v~~~---~~~K~~iLVlNK~DL~p 126 (509)
.+..+|++|+|+|+.++..+. .+ ..++.++ .++.|+|||.||+||.+
T Consensus 96 ~~~~~d~~ilv~D~~~~~s~~--~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 96 SYPDSDAVLICFDISRPETLD--SVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp GCTTCSEEEEEEETTCHHHHH--HHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred hccCCCEEEEEEECCCHHHHH--HHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence 568999999999999876433 22 2333332 35789999999999974
No 438
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.61 E-value=0.0013 Score=58.93 Aligned_cols=55 Identities=16% Similarity=0.268 Sum_probs=33.8
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeec---CeEEEEeCCCcc
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIIS---EKLVLCDCPGLV 286 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~---~~i~l~d~pg~~ 286 (509)
..++|+|.+|||||||+|.+++..........|... ....... -.+.++|++|..
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~ 65 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAP 65 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCc
Confidence 578999999999999999999754321111112111 1111121 246788999965
No 439
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=96.61 E-value=0.0034 Score=63.36 Aligned_cols=72 Identities=14% Similarity=0.091 Sum_probs=47.5
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH-h----cCCcEEEEEeCCCCCCHHHHHHHHHHHHh-----cCCeEEE
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREI-D----KYKRTLLLVNKADLLPFSVRKRWAKYFKD-----HDILFVF 146 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~-~----~~K~~iLVlNK~DL~p~~~~~~W~~yf~~-----~gi~~if 146 (509)
..+..+|+||+|+|+.++..+. .+..++..+ . .+.|+|||+||+||........+.+.+.. .++.++.
T Consensus 228 ~~~~~ad~vilV~D~~~~~s~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~ 305 (329)
T 3o47_A 228 HYFQNTQGLIFVVDSNDRERVN--EAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQA 305 (329)
T ss_dssp HHHTTEEEEEEEEETTCSSSHH--HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEE
T ss_pred HHhccCCEEEEEEECCchHHHH--HHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEE
Confidence 4688999999999998876432 233333332 1 36789999999999875444455555533 2345666
Q ss_pred eehh
Q 010472 147 WSAK 150 (509)
Q Consensus 147 ~Sa~ 150 (509)
+||+
T Consensus 306 vSAk 309 (329)
T 3o47_A 306 TCAT 309 (329)
T ss_dssp CBTT
T ss_pred EECC
Confidence 7774
No 440
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.61 E-value=0.00076 Score=70.62 Aligned_cols=68 Identities=6% Similarity=-0.048 Sum_probs=52.5
Q ss_pred CCCccccCCCchHHHHHHHHHH----cCCce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhhH
Q 010472 338 PKPYESQSRPPLALELLRAYCA----SRGYV----ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDTQ 408 (509)
Q Consensus 338 ~LSgGq~QR~~~~~~La~ALa~----~p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~~ 408 (509)
.||+||+++ ++||++|+. .|.++ |+++||+..+ .+..+|+.+...+..++..+|.....+.|++...
T Consensus 333 ~lS~Gq~~~----~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~ 408 (430)
T 1w1w_A 333 YLSGGEKTV----AALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVG 408 (430)
T ss_dssp GSCHHHHHH----HHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEE
T ss_pred cCCcchHHH----HHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEE
Confidence 389999999 999999995 57777 9999999999 9999999986544555666666544555655554
Q ss_pred h
Q 010472 409 A 409 (509)
Q Consensus 409 ~ 409 (509)
+
T Consensus 409 ~ 409 (430)
T 1w1w_A 409 V 409 (430)
T ss_dssp E
T ss_pred E
Confidence 4
No 441
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=96.60 E-value=0.0031 Score=66.19 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCCC----CChhHHHHHHHHh-cC-CcEEEEEeCCCCCC----H----HHHHHHHH
Q 010472 70 DMWRQLWRVLERSDLIVMVVDARDPLFY----RCPDLEAYAREID-KY-KRTLLLVNKADLLP----F----SVRKRWAK 135 (509)
Q Consensus 70 e~wrql~rvie~sDvVl~VvDaR~Pl~~----~~~~le~~v~~~~-~~-K~~iLVlNK~DL~p----~----~~~~~W~~ 135 (509)
++.+...+.+..+|++|+|+||.+..+. ..+...+++..+. .+ +++|+|+||+||.+ . ...+...+
T Consensus 96 ~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~ 175 (435)
T 1jny_A 96 DFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSK 175 (435)
T ss_dssp THHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHH
Confidence 3556667788999999999999985221 2344444443322 23 46899999999987 2 22344556
Q ss_pred HHHhcC-----CeEEEeehh
Q 010472 136 YFKDHD-----ILFVFWSAK 150 (509)
Q Consensus 136 yf~~~g-----i~~if~Sa~ 150 (509)
++...+ +.++.+||+
T Consensus 176 ~~~~~~~~~~~~~~i~iSA~ 195 (435)
T 1jny_A 176 FMRSYGFNTNKVRFVPVVAP 195 (435)
T ss_dssp HHHHTTCCCTTCEEEECBTT
T ss_pred HHHHcCCCcCCceEEEeecc
Confidence 666655 557778875
No 442
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.59 E-value=0.0015 Score=60.16 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.9
Q ss_pred cEEEEEecCCCCHhHHHHHHhcC
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQ 253 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~ 253 (509)
..++|||.+|||||||+|.++|.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999974
No 443
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.59 E-value=0.00099 Score=60.59 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=24.0
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCC
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
+|.+++|+|++||||||+.++|.+.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999999865
No 444
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=96.56 E-value=0.00053 Score=71.94 Aligned_cols=57 Identities=37% Similarity=0.415 Sum_probs=34.3
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceee--ec--CeEEEEeCCCcc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLI--IS--EKLVLCDCPGLV 286 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~--~~--~~i~l~d~pg~~ 286 (509)
-..++|+|..|+|||||+|.|++.....+...+|+|....... +. ..+.++||||..
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~ 94 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLD 94 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCC
Confidence 3579999999999999999999876544456677775543322 22 268899999986
No 445
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.56 E-value=0.001 Score=61.46 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCC
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
-..++|||.+|||||||+|.|+|..
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHhcc
Confidence 3578999999999999999998753
No 446
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=96.56 E-value=0.00027 Score=65.22 Aligned_cols=57 Identities=25% Similarity=0.254 Sum_probs=34.1
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcc-eEEeeCCcccccceeeec---CeEEEEeCCCcc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRT-GVTSTPGKTKHFQTLIIS---EKLVLCDCPGLV 286 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~-g~~~~~G~t~~~~~~~~~---~~i~l~d~pg~~ 286 (509)
-..++|+|.+|||||||+|.|++.... ......+.+......... ..+.++|+||.-
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 93 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcH
Confidence 357899999999999999999875431 111111111111111222 247888999954
No 447
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.56 E-value=0.001 Score=61.71 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=20.2
Q ss_pred EEEEEecCCCCHhHHHHHHhc
Q 010472 232 IVGFVGYPNVGKSSTINALVG 252 (509)
Q Consensus 232 ~vglvG~nGaGKSTLln~L~G 252 (509)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 448
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.55 E-value=0.0017 Score=59.15 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.6
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCC
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
..++|+|.+|||||||++.|++..
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 578999999999999999999764
No 449
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.54 E-value=0.00093 Score=68.58 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=23.4
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVG 252 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G 252 (509)
.+.+| +++|+|+||+|||||+++|.+
T Consensus 23 ~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 23 NFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp ECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 35677 999999999999999999987
No 450
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.53 E-value=0.0014 Score=59.83 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=22.1
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCC
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
...++|+|.+|||||||+|.+++..
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCC
Confidence 4579999999999999999998754
No 451
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.52 E-value=0.0022 Score=59.48 Aligned_cols=56 Identities=20% Similarity=0.124 Sum_probs=33.9
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcc-eEEeeCCcccccceeeec---CeEEEEeCCCcc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRT-GVTSTPGKTKHFQTLIIS---EKLVLCDCPGLV 286 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~-g~~~~~G~t~~~~~~~~~---~~i~l~d~pg~~ 286 (509)
...++|+|.+|||||||++.+++.... ......|.... ...... -.+.++|+||.-
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~ 68 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGQIVNLGLWDTAGQE 68 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEE-EEEECSSCEEEEEEECCCCCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEE-EEEEECCEEEEEEEEECCCcH
Confidence 357899999999999999999865421 11111111110 111111 257889999974
No 452
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=96.51 E-value=0.0046 Score=65.51 Aligned_cols=87 Identities=16% Similarity=0.185 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCC---CC-ChhHHHHHHHH-hcCCc-EEEEEeCCCCCC----HH----HHHHHHH
Q 010472 70 DMWRQLWRVLERSDLIVMVVDARDPLF---YR-CPDLEAYAREI-DKYKR-TLLLVNKADLLP----FS----VRKRWAK 135 (509)
Q Consensus 70 e~wrql~rvie~sDvVl~VvDaR~Pl~---~~-~~~le~~v~~~-~~~K~-~iLVlNK~DL~p----~~----~~~~W~~ 135 (509)
++.+.+.+.+..+|++|+|+||.++.+ +. .+...+.+..+ ..+.| +|+|+||+||.+ .+ ......+
T Consensus 133 ~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~ 212 (467)
T 1r5b_A 133 GYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSM 212 (467)
T ss_dssp ---------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHH
Confidence 466777788899999999999999742 11 12333333222 23555 899999999964 22 2234455
Q ss_pred HHHhc-C------CeEEEeehhhhHHhhhccccc
Q 010472 136 YFKDH-D------ILFVFWSAKAASAALEGKAVS 162 (509)
Q Consensus 136 yf~~~-g------i~~if~Sa~~~~~~~~g~~l~ 162 (509)
++... | +.++.+||+ .|.++.
T Consensus 213 ~l~~~~g~~~~~~~~~i~vSA~------~g~~i~ 240 (467)
T 1r5b_A 213 FLRRVAGYNSKTDVKYMPVSAY------TGQNVK 240 (467)
T ss_dssp HHHHHHCCCHHHHEEEEECBTT------TTBTTS
T ss_pred HHHHhcCCCccCCceEEecccc------cccccc
Confidence 56554 3 446677875 566554
No 453
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.49 E-value=0.0032 Score=64.19 Aligned_cols=68 Identities=19% Similarity=0.064 Sum_probs=42.7
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHHHHHHHHHHh----c-------CCeEE
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKD----H-------DILFV 145 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~----~-------gi~~i 145 (509)
.+++.+|+||+|+|+....... .+. .. ...++.++|+||+|+.+........+.+.+ . ++.++
T Consensus 188 ~~~~~aD~vl~V~d~~~~~~~~--~l~---~~-~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi 261 (355)
T 3p32_A 188 AVANMVDTFVLLTLARTGDQLQ--GIK---KG-VLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVL 261 (355)
T ss_dssp HHHTTCSEEEEEEESSTTCTTT--TCC---TT-SGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEE
T ss_pred HHHHhCCEEEEEECCCCCccHH--HHH---Hh-HhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceE
Confidence 4579999999999976433211 110 11 124689999999999876544433333332 1 46678
Q ss_pred Eeehh
Q 010472 146 FWSAK 150 (509)
Q Consensus 146 f~Sa~ 150 (509)
.+||+
T Consensus 262 ~iSA~ 266 (355)
T 3p32_A 262 TMSAV 266 (355)
T ss_dssp EEBGG
T ss_pred EEEcC
Confidence 88885
No 454
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.46 E-value=0.0014 Score=58.50 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=19.6
Q ss_pred cEEEEEecCCCCHhHHHHHHhc
Q 010472 231 VIVGFVGYPNVGKSSTINALVG 252 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G 252 (509)
.+.+|+|+||+|||||+.+|.-
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999873
No 455
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.45 E-value=0.0013 Score=61.33 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=22.2
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCC
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
...++|+|.+|||||||+|.|++..
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999999864
No 456
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=96.45 E-value=0.0018 Score=64.32 Aligned_cols=73 Identities=14% Similarity=0.053 Sum_probs=46.0
Q ss_pred HHhhCCEEEEEeeCCCCCCCCCh--hHHHHHHHHhcCCcEEEEEeCCCCCCHHH--------------HHHHHHHHHhcC
Q 010472 78 VLERSDLIVMVVDARDPLFYRCP--DLEAYAREIDKYKRTLLLVNKADLLPFSV--------------RKRWAKYFKDHD 141 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~--~le~~v~~~~~~K~~iLVlNK~DL~p~~~--------------~~~W~~yf~~~g 141 (509)
.+..+|++|+|+|+.++.++... .+...+....+++|+|||+||+||.+... .....++....+
T Consensus 223 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 302 (332)
T 2wkq_A 223 SYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 302 (332)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcC
Confidence 57899999999999987753321 11122222234789999999999975321 112233444556
Q ss_pred C-eEEEeehh
Q 010472 142 I-LFVFWSAK 150 (509)
Q Consensus 142 i-~~if~Sa~ 150 (509)
. .++.+||+
T Consensus 303 ~~~~~~~Sa~ 312 (332)
T 2wkq_A 303 AVKYLECSAL 312 (332)
T ss_dssp CSEEEECCTT
T ss_pred CcEEEEecCC
Confidence 5 66677875
No 457
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.44 E-value=0.0015 Score=65.25 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=25.3
Q ss_pred CCCcEEEEEecCCCCHhHHHHHHhcCCc
Q 010472 228 PKNVIVGFVGYPNVGKSSTINALVGQKR 255 (509)
Q Consensus 228 ~~g~~vglvG~nGaGKSTLln~L~G~~~ 255 (509)
.+|.+++|+|+|||||||+++.|++...
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999998764
No 458
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.44 E-value=0.0028 Score=61.35 Aligned_cols=37 Identities=11% Similarity=0.157 Sum_probs=28.1
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCC
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPG 263 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G 263 (509)
...+.++.|+|+|||||||+.+.|+.....+...+.+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~ 65 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDG 65 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEec
Confidence 3567899999999999999999998765433333333
No 459
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=96.43 E-value=0.0046 Score=64.01 Aligned_cols=79 Identities=18% Similarity=0.124 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-cCCc-EEEEEeCCCCCC-HHH----HHHHHHHHHhcC-
Q 010472 70 DMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREID-KYKR-TLLLVNKADLLP-FSV----RKRWAKYFKDHD- 141 (509)
Q Consensus 70 e~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-~~K~-~iLVlNK~DL~p-~~~----~~~W~~yf~~~g- 141 (509)
++.+.+.+.+..+|++|+|+||.++.. ++..+++..+. .+.| +|+|+||+|+.+ .+. .+...+++...+
T Consensus 78 ~f~~~~~~~~~~aD~~ilVvda~~g~~---~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 154 (397)
T 1d2e_A 78 DYVKNMITGTAPLDGCILVVAANDGPM---PQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGY 154 (397)
T ss_dssp HHHHHHHHTSSCCSEEEEEEETTTCSC---HHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhhHhhCCEEEEEEECCCCCC---HHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 456677788899999999999999763 33333333332 3567 689999999985 332 233445666555
Q ss_pred ----CeEEEeehhh
Q 010472 142 ----ILFVFWSAKA 151 (509)
Q Consensus 142 ----i~~if~Sa~~ 151 (509)
+.+++.||+.
T Consensus 155 ~~~~~~~i~~SA~~ 168 (397)
T 1d2e_A 155 KGEETPIIVGSALC 168 (397)
T ss_dssp CTTTSCEEECCHHH
T ss_pred CcccCcEEEeehhh
Confidence 4677788863
No 460
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.43 E-value=0.0026 Score=57.67 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=34.2
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhH-HHHH---HHHhcCCcEEEEEeCCCCCC
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDL-EAYA---REIDKYKRTLLLVNKADLLP 126 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~l-e~~v---~~~~~~K~~iLVlNK~DL~p 126 (509)
.+..+|++|+|+|+.++.++. .+ ..+. ....++.|+|||.||+||.+
T Consensus 75 ~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 75 SYPDSDAVLICFDISRPETLD--SVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp GCTTCSEEEEEEETTCHHHHH--HHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred hcCCCcEEEEEEECCCHHHHH--HHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence 568999999999999876432 22 2233 33335789999999999974
No 461
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.40 E-value=0.00089 Score=68.78 Aligned_cols=73 Identities=12% Similarity=0.015 Sum_probs=50.4
Q ss_pred CCCCCccccCCCchH--HHHHHHHHHc-CCce----eCCCCCHHHH-HHHHHHHHhhcCCccEEEcCCCCChhhccchhh
Q 010472 336 PKPKPYESQSRPPLA--LELLRAYCAS-RGYV----ASSGLPDETR-AARIILKDFIDGKLPHFEMPPGMSHEEVGMEDT 407 (509)
Q Consensus 336 ~~~LSgGq~QR~~~~--~~La~ALa~~-p~lL----PtsGLD~~~r-~~~~lLkd~~~gkl~~~~~pp~~~~~~~~~~~~ 407 (509)
+..+|+||+||-.-+ +++|++++.+ |+++ |++|||+..+ .+..+|+.+..+.. ++..+|....+.+|++..
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~-vi~~th~~~~~~~~d~~~ 356 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQ-MIIITHHRELEDVADVII 356 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSE-EEEEESCGGGGGGCSEEE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCe-EEEEEChHHHHhhCCEEE
Confidence 357999999981100 2567888888 8887 9999999999 99999999865443 444445554455555444
Q ss_pred Hh
Q 010472 408 QA 409 (509)
Q Consensus 408 ~~ 409 (509)
.+
T Consensus 357 ~l 358 (371)
T 3auy_A 357 NV 358 (371)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 462
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=96.40 E-value=0.00041 Score=63.95 Aligned_cols=71 Identities=27% Similarity=0.309 Sum_probs=42.4
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhc----CCcEEEEEeCCCCCCHHHH--HHHHHHHHhcCCeEEEeehh
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLEAYAREIDK----YKRTLLLVNKADLLPFSVR--KRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~----~K~~iLVlNK~DL~p~~~~--~~W~~yf~~~gi~~if~Sa~ 150 (509)
.+..+|++|+|+|+.++..+ ..+..++..+.. +.|+|||+||+||.+.... ..-.++....++.++.+||+
T Consensus 102 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~ 178 (199)
T 3l0i_B 102 YYRGAHGIIVVYDVTDQESF--NNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAK 178 (199)
T ss_dssp --CCCSEEEECC-CCCSHHH--HHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC-
T ss_pred HhhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECC
Confidence 67889999999999987642 234455555432 6789999999999865321 11223344556777777775
No 463
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=96.40 E-value=0.0078 Score=65.76 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHH---HHHHHHHHHHhcCC---e
Q 010472 70 DMWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFS---VRKRWAKYFKDHDI---L 143 (509)
Q Consensus 70 e~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~---~~~~W~~yf~~~gi---~ 143 (509)
++.....+.+..+|.+|+|+||.++... ..++.+......+.|+|+|+||+||.... ..+.+.+. .++ .
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~--qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~---lg~~~~~ 159 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEA--QTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEV---LGLDPEE 159 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCH--HHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHT---SCCCGGG
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccH--HHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHh---hCCCccc
Confidence 3556677789999999999999998642 22333333334578999999999997632 22223332 344 3
Q ss_pred EEEeehh
Q 010472 144 FVFWSAK 150 (509)
Q Consensus 144 ~if~Sa~ 150 (509)
+++.||+
T Consensus 160 vi~vSAk 166 (600)
T 2ywe_A 160 AILASAK 166 (600)
T ss_dssp CEECBTT
T ss_pred EEEEEee
Confidence 6677775
No 464
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=96.38 E-value=0.0034 Score=66.78 Aligned_cols=72 Identities=17% Similarity=0.096 Sum_probs=45.7
Q ss_pred HHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHh-----cCCcEEEEEeCCCCCCHHHHHHHHHHHH-----hcCCeEEE
Q 010472 77 RVLERSDLIVMVVDARDPLFYRCPDLEAYAREID-----KYKRTLLLVNKADLLPFSVRKRWAKYFK-----DHDILFVF 146 (509)
Q Consensus 77 rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~-----~~K~~iLVlNK~DL~p~~~~~~W~~yf~-----~~gi~~if 146 (509)
..++.+|+||+|+|+.++..+. .+..++.++. .++|+|||+||+||..........+.+. ..+..+++
T Consensus 385 ~~~~~ad~~i~V~D~~~~~s~~--~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (497)
T 3lvq_E 385 HYYTGTQGLIFVVDCADRDRID--EARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQP 462 (497)
T ss_dssp GGGTTCCEEEEEEETTCGGGHH--HHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEE
T ss_pred HHhccCCEEEEEEECcchhHHH--HHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEE
Confidence 3789999999999999876322 3333444431 3789999999999975422222233322 12334667
Q ss_pred eehh
Q 010472 147 WSAK 150 (509)
Q Consensus 147 ~Sa~ 150 (509)
+||+
T Consensus 463 ~SA~ 466 (497)
T 3lvq_E 463 SCAT 466 (497)
T ss_dssp CBTT
T ss_pred EECC
Confidence 7875
No 465
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.38 E-value=0.0062 Score=62.48 Aligned_cols=58 Identities=22% Similarity=0.139 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCCCCChh---HHHHHHHHh-cCCcEEEEEeCCCCCCH
Q 010472 70 DMWRQLWRVLERSDLIVMVVDARDPLFYRCPD---LEAYAREID-KYKRTLLLVNKADLLPF 127 (509)
Q Consensus 70 e~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~---le~~v~~~~-~~K~~iLVlNK~DL~p~ 127 (509)
+.++.++..+..+|+|++|+|+.+|....... ....+.++. .++|+|+|+||+|+++.
T Consensus 246 e~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 246 DAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKING 307 (364)
T ss_dssp HHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCS
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCc
Confidence 55677777889999999999998875100111 123344433 46899999999999874
No 466
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.38 E-value=0.00092 Score=72.47 Aligned_cols=30 Identities=27% Similarity=0.308 Sum_probs=27.2
Q ss_pred cCCCCcEEEEEecCCCCHhHHHHHHhcCCc
Q 010472 226 VAPKNVIVGFVGYPNVGKSSTINALVGQKR 255 (509)
Q Consensus 226 ~i~~g~~vglvG~nGaGKSTLln~L~G~~~ 255 (509)
.+.+|++++|+|+||||||||+++|+|.+.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 356899999999999999999999999875
No 467
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.38 E-value=0.0038 Score=58.91 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.6
Q ss_pred cEEEEEecCCCCHhHHHHHHhcCC
Q 010472 231 VIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 231 ~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
..++|||.+|||||||+|.++|..
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 578999999999999999999754
No 468
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=96.38 E-value=0.0031 Score=67.94 Aligned_cols=68 Identities=22% Similarity=0.305 Sum_probs=49.4
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH---hcCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCeEEEeehh
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLEAYAREI---DKYKRTLLLVNKADLLPFSV--RKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~---~~~K~~iLVlNK~DL~p~~~--~~~W~~yf~~~gi~~if~Sa~ 150 (509)
.+..+|++|.|+|+..+ ..+..+..++ .+++|+|||+||+|+.+... .+...+++...+..++.+||+
T Consensus 118 ~l~~~d~ii~V~D~s~~-----~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~ 190 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD-----SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCK 190 (535)
T ss_dssp HHHSSEEEEEEECGGGG-----GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-
T ss_pred HccCCcEEEEEEeCCCc-----hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecC
Confidence 57789999999999865 3444444443 34689999999999986432 345666777778888888986
No 469
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=96.37 E-value=0.0032 Score=65.38 Aligned_cols=41 Identities=24% Similarity=0.149 Sum_probs=32.2
Q ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCeEEEeehhhh
Q 010472 112 YKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWSAKAA 152 (509)
Q Consensus 112 ~K~~iLVlNK~DL~p~~~~~~W~~yf~~~gi~~if~Sa~~~ 152 (509)
.||+|+|+||+|+........+.+++...+..++.+||+..
T Consensus 214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~~~~~~vv~iSA~~e 254 (397)
T 1wxq_A 214 NKPMVIAANKADAASDEQIKRLVREEEKRGYIVIPTSAAAE 254 (397)
T ss_dssp HSCEEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred CCCEEEEEeCccccchHHHHHHHHHHhhcCCcEEEEeccch
Confidence 59999999999998665566677777666777888998743
No 470
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.0065 Score=66.65 Aligned_cols=86 Identities=16% Similarity=0.157 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCC----CCChhHHHHHHHHh-cC-CcEEEEEeCCCCCC--HH----HHHHHHHHHH
Q 010472 71 MWRQLWRVLERSDLIVMVVDARDPLF----YRCPDLEAYAREID-KY-KRTLLLVNKADLLP--FS----VRKRWAKYFK 138 (509)
Q Consensus 71 ~wrql~rvie~sDvVl~VvDaR~Pl~----~~~~~le~~v~~~~-~~-K~~iLVlNK~DL~p--~~----~~~~W~~yf~ 138 (509)
+.+.....+..+|++|+|+||.++.+ ...+.....+..+. .+ +++|||+||+||++ .. .......++.
T Consensus 258 f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~ 337 (611)
T 3izq_1 258 FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLV 337 (611)
T ss_dssp HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHHHHHHHHHHHHHHH
Confidence 56677778899999999999998531 11233333333222 23 56999999999997 21 2333445555
Q ss_pred hcC-----CeEEEeehhhhHHhhhccccc
Q 010472 139 DHD-----ILFVFWSAKAASAALEGKAVS 162 (509)
Q Consensus 139 ~~g-----i~~if~Sa~~~~~~~~g~~l~ 162 (509)
..| +.++.+||+ .|.++.
T Consensus 338 ~~g~~~~~~~~i~vSA~------tG~gI~ 360 (611)
T 3izq_1 338 DIGFFEDNINWVPISGF------SGEGVY 360 (611)
T ss_dssp HHTCCGGGCEEEECCTT------TCTTTS
T ss_pred hhcccccCccEEeeecc------cCCCcc
Confidence 444 467778885 566554
No 471
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.33 E-value=0.00094 Score=69.90 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=25.0
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCCc
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQKR 255 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~~ 255 (509)
+..|.+++|+|+||+|||||+++|+++..
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 45678999999999999999999998654
No 472
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.0034 Score=68.83 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=23.0
Q ss_pred CCCcEEEEEecCCCCHhHHHHHHhcC
Q 010472 228 PKNVIVGFVGYPNVGKSSTINALVGQ 253 (509)
Q Consensus 228 ~~g~~vglvG~nGaGKSTLln~L~G~ 253 (509)
.....++|+|.+|+|||||+|.|++.
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHh
Confidence 34568999999999999999999876
No 473
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.27 E-value=0.0019 Score=64.25 Aligned_cols=121 Identities=11% Similarity=-0.038 Sum_probs=66.0
Q ss_pred CCCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeeecCeEEEEeCCCccCCCCcccHHHHHHhcc-----
Q 010472 228 PKNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEKLVLCDCPGLVFPSFSISRYDMVASGV----- 302 (509)
Q Consensus 228 ~~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~~~~i~l~d~pg~~~p~~~~~~~e~v~~g~----- 302 (509)
..+.++||+|++|||||||.+.|.+.+... |.. ...+.++.+.+++++. +...++..+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-----g~~--------~~~~~iv~~D~f~~~~---~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-----YGG--------EKSIGYASIDDFYLTH---EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-----HGG--------GSCEEEEEGGGGBCCH---HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-----CCC--------CceEEEeccccccCCh---HHHHHHhccccccch
Confidence 357899999999999999999999987531 100 1234455777777643 3344443321
Q ss_pred CCc---chhhhHHHHHHHHHHhCCccchh-----hHhhccCCCCCCccccCCCchHHHHH--HHHHHcCCce----eCCC
Q 010472 303 LPI---DRMTEHRQAVQVVANRVPRHVIE-----NVCKINLPKPKPYESQSRPPLALELL--RAYCASRGYV----ASSG 368 (509)
Q Consensus 303 ~~~---~~~~~~~~~~~~i~~~l~~~~L~-----~~~~~~~~~~LSgGq~QR~~~~~~La--~ALa~~p~lL----PtsG 368 (509)
+.. ....+.....+.+...-. ++. ..+.-.....+||||.|| +.++ +++ .+.++ ++++
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~--g~~t~~~~~v~~p~y~~~~sgGq~~R----~~~a~~~~~--~~~IlIlEG~~~~ 164 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFN--NNEHPDQDTVVLPKYDKSQFKGEGDR----CPTGQKIKL--PVDIFILEGWFLG 164 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC--------CCEEEECCEETTHHHHTCEE----CSSCEEEES--SCSEEEEEESSTT
T ss_pred hhhccCcchhHHHHHHHHHHHhhc--cCccccCcceeeccCccccCCccccc----cccccceEc--CCCEEEEeCcccc
Confidence 100 001111122222222211 110 001112235689999998 5554 444 78877 8888
Q ss_pred CCHH
Q 010472 369 LPDE 372 (509)
Q Consensus 369 LD~~ 372 (509)
+|+.
T Consensus 165 ld~~ 168 (290)
T 1odf_A 165 FNPI 168 (290)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 8864
No 474
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.26 E-value=0.012 Score=52.79 Aligned_cols=71 Identities=28% Similarity=0.257 Sum_probs=40.1
Q ss_pred HhhCCEEEEEeeCCCCCCC---------CChhHHHHHHHH-hcCCcEEEEEeCCCCCCHH--HHHHHHHHHHhc----CC
Q 010472 79 LERSDLIVMVVDARDPLFY---------RCPDLEAYAREI-DKYKRTLLLVNKADLLPFS--VRKRWAKYFKDH----DI 142 (509)
Q Consensus 79 ie~sDvVl~VvDaR~Pl~~---------~~~~le~~v~~~-~~~K~~iLVlNK~DL~p~~--~~~~W~~yf~~~----gi 142 (509)
...+++++.|+|+...... ...+++ ....+ ..+.|++||+||+||.... ..+.|.+.+... ++
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 158 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVE-FYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDK 158 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHH-HHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGGHHH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHH-HHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhhhccCC
Confidence 6678899999997543110 001111 11222 2478999999999998743 344455444321 12
Q ss_pred eEEEeehh
Q 010472 143 LFVFWSAK 150 (509)
Q Consensus 143 ~~if~Sa~ 150 (509)
.++.+||+
T Consensus 159 ~~~~~Sa~ 166 (190)
T 2cxx_A 159 VFIPISAK 166 (190)
T ss_dssp HEEECCTT
T ss_pred cEEEEecC
Confidence 35667775
No 475
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.26 E-value=0.002 Score=58.64 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhc
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVG 252 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G 252 (509)
.|.+++|+|++||||||+.+.|+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 477899999999999999999984
No 476
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.24 E-value=0.0012 Score=64.22 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=23.0
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCC
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
|.+++|+|++||||||+.++|++.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 7899999999999999999998754
No 477
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.23 E-value=0.0064 Score=59.43 Aligned_cols=66 Identities=15% Similarity=0.167 Sum_probs=43.2
Q ss_pred CCEEEEEeeC-CCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHHHH----HHHHHHhcCCeEEEeehh
Q 010472 82 SDLIVMVVDA-RDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKR----WAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 82 sDvVl~VvDa-R~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~~~----W~~yf~~~gi~~if~Sa~ 150 (509)
+|++|+++|. +.++. +....+++.+..++|+|+|+||+|+++...... ..+.+...++.++.+|+.
T Consensus 116 ~~~~l~~i~~~~~~~~---~~d~~~l~~l~~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~ 186 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLK---PLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPET 186 (274)
T ss_dssp CCEEEEEECSCCSSCC---HHHHHHHHHHTTTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred eeEEEEEecCCCCCCC---HHHHHHHHHHhccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCC
Confidence 6787777754 44442 333455666666889999999999998765533 445566678877667764
No 478
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.23 E-value=0.00083 Score=66.02 Aligned_cols=66 Identities=17% Similarity=0.053 Sum_probs=44.0
Q ss_pred HHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHH----HHHHHHHHHhcCCeEEEeehh
Q 010472 78 VLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSV----RKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 78 vie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~----~~~W~~yf~~~gi~~if~Sa~ 150 (509)
..+.+|++|.|+|+.++. +...+...+.+ .+.|+|+|+||+|+.+... .+.+.+ ..|+.++.+||+
T Consensus 82 ~~~~~d~ii~VvD~~~~~--~~~~~~~~l~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~---~lg~~~i~~SA~ 151 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLE--RNLYLTLQLLE--LGIPCIVALNMLDIAEKQNIRIEIDALSA---RLGCPVIPLVST 151 (274)
T ss_dssp HHTCCSEEEEEEEGGGHH--HHHHHHHHHHH--HTCCEEEEEECHHHHHHTTEEECHHHHHH---HHTSCEEECCCG
T ss_pred hhcCCCEEEEEecCCChH--HHHHHHHHHHh--cCCCEEEEEECccchhhhhHHHHHHHHHH---hcCCCEEEEEcC
Confidence 458999999999998743 11122222332 3789999999999976432 223333 347888888886
No 479
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.22 E-value=0.0025 Score=58.23 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=25.4
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCCc
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQKR 255 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~~ 255 (509)
..+|.+++|+|++||||||+.+.|+..+.
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999998654
No 480
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=96.21 E-value=0.0043 Score=65.58 Aligned_cols=81 Identities=17% Similarity=0.097 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCCC--C--ChhHHHHHHHH-hcCC-cEEEEEeCCCCCC--HHH----HHHHHHHH
Q 010472 70 DMWRQLWRVLERSDLIVMVVDARDPLFY--R--CPDLEAYAREI-DKYK-RTLLLVNKADLLP--FSV----RKRWAKYF 137 (509)
Q Consensus 70 e~wrql~rvie~sDvVl~VvDaR~Pl~~--~--~~~le~~v~~~-~~~K-~~iLVlNK~DL~p--~~~----~~~W~~yf 137 (509)
++.+...+.+..+|++|+|+||.++.+. + .....+.+..+ ..+. ++|+|+||+||++ .+. .+...+++
T Consensus 97 ~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l 176 (458)
T 1f60_A 97 DFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFI 176 (458)
T ss_dssp THHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHHHHHHHHHHHHH
Confidence 4667777889999999999999986421 1 11222222222 2244 4899999999983 332 23444555
Q ss_pred HhcC-----CeEEEeehh
Q 010472 138 KDHD-----ILFVFWSAK 150 (509)
Q Consensus 138 ~~~g-----i~~if~Sa~ 150 (509)
...+ +.++.+||+
T Consensus 177 ~~~g~~~~~~~~i~vSA~ 194 (458)
T 1f60_A 177 KKVGYNPKTVPFVPISGW 194 (458)
T ss_dssp HHHTCCGGGCCEEECCTT
T ss_pred HHcCCCccCceEEEeecc
Confidence 5555 567778885
No 481
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.21 E-value=0.0022 Score=64.26 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=25.9
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCCc
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQKR 255 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~~ 255 (509)
..++.+++|+|+|||||||++..|++...
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 35688999999999999999999999764
No 482
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=96.21 E-value=0.0045 Score=62.48 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=34.2
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee-cCeEEEEeCCCc
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII-SEKLVLCDCPGL 285 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~-~~~i~l~d~pg~ 285 (509)
....++|+|.+|||||||++.|++.........-+.. ...... ...+.++|+||.
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~--~~~~~~~~~~l~i~Dt~G~ 219 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGGQ 219 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEE--EEEEEETTEEEEEEECC--
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcccccceE--EEEEecCcEEEEEEECCCC
Confidence 3457999999999999999999886543322222211 111111 235789999994
No 483
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.20 E-value=0.0033 Score=61.24 Aligned_cols=66 Identities=26% Similarity=0.223 Sum_probs=43.0
Q ss_pred hhCCEEEEEeeCCCCCCCCChhHHHHHHHH-hcCCcEEEEEeCCCCCCHHHHHHH-HHHHHhcCCeEEEeehh
Q 010472 80 ERSDLIVMVVDARDPLFYRCPDLEAYAREI-DKYKRTLLLVNKADLLPFSVRKRW-AKYFKDHDILFVFWSAK 150 (509)
Q Consensus 80 e~sDvVl~VvDaR~Pl~~~~~~le~~v~~~-~~~K~~iLVlNK~DL~p~~~~~~W-~~yf~~~gi~~if~Sa~ 150 (509)
+.+|+||.|+|+.++.. .++ +...+ ..+.|+|||+||+|+......... .++-...|+.++.+||+
T Consensus 82 ~~~d~ii~V~D~t~~~~----~~~-~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~ 149 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQ----SLY-LLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSV 149 (258)
T ss_dssp SCCSEEEEEEETTSCHH----HHH-HHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTT
T ss_pred cCCCEEEEEeCCCchhh----HHH-HHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEee
Confidence 68999999999987541 222 22222 347899999999999654322111 12223457888888885
No 484
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.19 E-value=0.0095 Score=57.39 Aligned_cols=76 Identities=8% Similarity=0.052 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhc-------CCcEEEEEeCCCCCCHHHH--------HHHHH
Q 010472 71 MWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDK-------YKRTLLLVNKADLLPFSVR--------KRWAK 135 (509)
Q Consensus 71 ~wrql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~-------~K~~iLVlNK~DL~p~~~~--------~~W~~ 135 (509)
+.+-++.....+|+||+|+|+.. + .......+..+.. ++++|||.||+||...... ....+
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~-~---~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~ 170 (247)
T 3lxw_A 95 RGHCYLLSAPGPHALLLVTQLGR-F---TAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRE 170 (247)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTB-C---CHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHH
T ss_pred HHHHHHhcCCCCCEEEEEEeCCC-C---CHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHH
Confidence 33444444499999999999964 2 2222222222211 5789999999999763221 12334
Q ss_pred HHHhcCCeEEEeehh
Q 010472 136 YFKDHDILFVFWSAK 150 (509)
Q Consensus 136 yf~~~gi~~if~Sa~ 150 (509)
...+.|..+++|+..
T Consensus 171 l~~~~g~~~~~~~~~ 185 (247)
T 3lxw_A 171 LVAECGGRVCAFDNR 185 (247)
T ss_dssp HHHHTTTCEEECCTT
T ss_pred HHHHcCCeEEEEeCC
Confidence 455567777777654
No 485
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=96.19 E-value=0.0021 Score=68.22 Aligned_cols=70 Identities=17% Similarity=0.183 Sum_probs=45.3
Q ss_pred HHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHHhcCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCeEEEeehh
Q 010472 75 LWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREIDKYKRTLLLVNKADLLPFSVRKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 75 l~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~~~~K~~iLVlNK~DL~p~~~~~~W~~yf~~~gi~~if~Sa~ 150 (509)
.+..+..+|+||+|+|+.+|.. .....+...+ ..+|+|+|+||+||.+........+ |. .+..++.+||+
T Consensus 297 ~~~~~~~aD~vl~VvD~s~~~~---~~~~~i~~~l-~~~piivV~NK~Dl~~~~~~~~~~~-~~-~~~~~i~iSAk 366 (462)
T 3geh_A 297 SRQAANTADLVLLTIDAATGWT---TGDQEIYEQV-KHRPLILVMNKIDLVEKQLITSLEY-PE-NITQIVHTAAA 366 (462)
T ss_dssp --CCCCSCSEEEEEEETTTCSC---HHHHHHHHHH-TTSCEEEEEECTTSSCGGGSTTCCC-CT-TCCCEEEEBTT
T ss_pred HhhhhhcCCEEEEEeccCCCCC---HHHHHHHHhc-cCCcEEEEEECCCCCcchhhHHHHH-hc-cCCcEEEEECC
Confidence 3445788999999999999874 2334444444 4589999999999988643320000 00 24567778875
No 486
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.16 E-value=0.0022 Score=59.41 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=22.3
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCC
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998754
No 487
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=96.16 E-value=0.0032 Score=66.96 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=36.9
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee-cCeEEEEeCCCcc
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII-SEKLVLCDCPGLV 286 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~-~~~i~l~d~pg~~ 286 (509)
....++|||.+|||||||+|.|++..........|.+. ..+.. ...+.++|++|.-
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~--~~~~~~~~~~~l~Dt~G~~ 377 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNV--ETVTYKNVKFNVWDVGGQD 377 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEE--EEEESSSCEEEEEEECCCG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeE--EEEEeCCEEEEEEECCCcH
Confidence 34689999999999999999999876433222222221 11111 2358899999953
No 488
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=96.09 E-value=0.0049 Score=63.92 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=23.0
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCC
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
+...++++|.+|+|||||+|.|+|..
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcc
Confidence 34689999999999999999999953
No 489
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=96.08 E-value=0.0016 Score=70.34 Aligned_cols=56 Identities=23% Similarity=0.455 Sum_probs=38.2
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCCcceEEeeCCcccccceeee----cCeEEEEeCCCcc
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLII----SEKLVLCDCPGLV 286 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~~~g~~~~~G~t~~~~~~~~----~~~i~l~d~pg~~ 286 (509)
.-+++|+|.+|+|||||++.|.+..... ...+|.|.+...... ...+.++|+||.-
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~-~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe 63 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAA-MEAGGITQHIGAFLVSLPSGEKITFLDTPGHA 63 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHH-SSSCCBCCCTTSCCBCSSCSSCCBCEECSSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccc-ccCCceeEEEeEEEEEeCCCCEEEEEECCChH
Confidence 3468999999999999999998754311 134555554432221 2358899999953
No 490
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.06 E-value=0.0019 Score=62.84 Aligned_cols=66 Identities=17% Similarity=0.025 Sum_probs=42.9
Q ss_pred hhCCEEEEEeeCCCCCCCCChhHHHHHHHH-hcCCcEEEEEeCCCCCCHHHHHH-HHHHHHhcCCeEEEeehh
Q 010472 80 ERSDLIVMVVDARDPLFYRCPDLEAYAREI-DKYKRTLLLVNKADLLPFSVRKR-WAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 80 e~sDvVl~VvDaR~Pl~~~~~~le~~v~~~-~~~K~~iLVlNK~DL~p~~~~~~-W~~yf~~~gi~~if~Sa~ 150 (509)
+.+|+||.|+|+.++.. .+ .+...+ ..+.|+|+|+||+|+........ ...+-...|+.++.+||+
T Consensus 82 ~~~d~vi~VvDas~~~~----~~-~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~ 149 (256)
T 3iby_A 82 LEYDCIINVIDACHLER----HL-YLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAH 149 (256)
T ss_dssp SCCSEEEEEEEGGGHHH----HH-HHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGG
T ss_pred CCCCEEEEEeeCCCchh----HH-HHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECC
Confidence 89999999999998431 11 222222 23789999999999976542211 111223347888888986
No 491
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.05 E-value=0.004 Score=58.27 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCC
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
....++|+|.+|||||||++.|++..
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCC
Confidence 34679999999999999999998754
No 492
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.04 E-value=0.0031 Score=59.03 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=25.7
Q ss_pred CCCCcEEEEEecCCCCHhHHHHHHhcCCc
Q 010472 227 APKNVIVGFVGYPNVGKSSTINALVGQKR 255 (509)
Q Consensus 227 i~~g~~vglvG~nGaGKSTLln~L~G~~~ 255 (509)
+..|.+++|+|++||||||+.+.|.+.+.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45688999999999999999999998764
No 493
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=96.03 E-value=0.018 Score=62.08 Aligned_cols=52 Identities=21% Similarity=0.206 Sum_probs=38.3
Q ss_pred HHHHHHHhhCCEEEEEeeCCCCCCCCChhHHHHHHHH-hcCCcEEEEEeCCCCCCH
Q 010472 73 RQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREI-DKYKRTLLLVNKADLLPF 127 (509)
Q Consensus 73 rql~rvie~sDvVl~VvDaR~Pl~~~~~~le~~v~~~-~~~K~~iLVlNK~DL~p~ 127 (509)
....+.+..+|.+|+|+|+.++.. .....+...+ ..+.|+|+|+||+|+...
T Consensus 97 ~~~~~~l~~aD~allVvDa~~g~~---~~t~~~~~~~~~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 97 EDTYRTLTAVDSALMVIDAAKGVE---PRTIKLMEVCRLRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp HHHHHGGGGCSEEEEEEETTTCSC---HHHHHHHHHHHTTTCCEEEEEECTTSCCS
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCC---HHHHHHHHHHHHcCCCEEEEEeCCCCccc
Confidence 345668899999999999999764 3333333333 347899999999999754
No 494
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.03 E-value=0.0031 Score=56.27 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=20.5
Q ss_pred EEEEEecCCCCHhHHHHHHhcCC
Q 010472 232 IVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 232 ~vglvG~nGaGKSTLln~L~G~~ 254 (509)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998653
No 495
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.03 E-value=0.011 Score=58.40 Aligned_cols=56 Identities=25% Similarity=0.371 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhCCEEEEEeeC-CCCCCCCChhHHHHHHHHh-cCCcEEEEEeCCCCCCHH
Q 010472 71 MWRQLWRVLERSDLIVMVVDA-RDPLFYRCPDLEAYAREID-KYKRTLLLVNKADLLPFS 128 (509)
Q Consensus 71 ~wrql~rvie~sDvVl~VvDa-R~Pl~~~~~~le~~v~~~~-~~K~~iLVlNK~DL~p~~ 128 (509)
+.....+.+..+|++|+|+|+ ..++... +...++..+. .++|+|+|+||+|+++..
T Consensus 157 ~~~~~~~~~~~~d~iilvvd~~~~~~~~~--~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~ 214 (315)
T 1jwy_B 157 IRRMVMAYIKKQNAIIVAVTPANTDLANS--DALQLAKEVDPEGKRTIGVITKLDLMDKG 214 (315)
T ss_dssp HHHHHHHHHHSTTEEEEEEEESSSCSTTC--SHHHHHHHHCSSCSSEEEEEECTTSSCSS
T ss_pred HHHHHHHHHcCCCeEEEEEEecCcchhhh--HHHHHHHHhCCCCCcEEEEEcCcccCCcc
Confidence 445566789999999999997 4444322 2223444443 378999999999998754
No 496
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.01 E-value=0.0011 Score=61.27 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.7
Q ss_pred CcEEEEEecCCCCHhHHHHHHhcCC
Q 010472 230 NVIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 230 g~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
...++|+|.+|||||||++.|++..
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~~ 54 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
Confidence 4578999999999999999998654
No 497
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.01 E-value=0.004 Score=57.01 Aligned_cols=26 Identities=27% Similarity=0.530 Sum_probs=23.4
Q ss_pred CCCcEEEEEecCCCCHhHHHHHHhcC
Q 010472 228 PKNVIVGFVGYPNVGKSSTINALVGQ 253 (509)
Q Consensus 228 ~~g~~vglvG~nGaGKSTLln~L~G~ 253 (509)
..+.+++|+|++||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999999865
No 498
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.00 E-value=0.012 Score=52.24 Aligned_cols=63 Identities=27% Similarity=0.199 Sum_probs=41.6
Q ss_pred hhCCEEEEEeeCCCCCCCCChhHHHHHHHH-hcCCcEEEEEeCCCCCCHHH----HHHHHHHHHhcCCeEEEeehh
Q 010472 80 ERSDLIVMVVDARDPLFYRCPDLEAYAREI-DKYKRTLLLVNKADLLPFSV----RKRWAKYFKDHDILFVFWSAK 150 (509)
Q Consensus 80 e~sDvVl~VvDaR~Pl~~~~~~le~~v~~~-~~~K~~iLVlNK~DL~p~~~----~~~W~~yf~~~gi~~if~Sa~ 150 (509)
..+|+++.|+|+.++. .+..++.++ ..++|+|+|.||+||..... .+.|.+. .+..++.+||+
T Consensus 80 ~~~~~~i~v~D~~~~~-----~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~SA~ 147 (165)
T 2wji_A 80 EKPDLVVNIVDATALE-----RNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKI---LGVKVVPLSAA 147 (165)
T ss_dssp HCCSEEEEEEETTCHH-----HHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHH---HTSCEEECBGG
T ss_pred CCCCEEEEEecCCchh-----HhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHH---hCCCEEEEEcC
Confidence 4799999999998632 222333333 24789999999999964321 2334433 35677788885
No 499
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.0045 Score=56.18 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=39.6
Q ss_pred HHHHHhhCCEEEEEeeCC-CCCCCCChhHHHHHHHH----h----cCCcEEEEEeCCCCCCHHHHHHHHHHHH
Q 010472 75 LWRVLERSDLIVMVVDAR-DPLFYRCPDLEAYAREI----D----KYKRTLLLVNKADLLPFSVRKRWAKYFK 138 (509)
Q Consensus 75 l~rvie~sDvVl~VvDaR-~Pl~~~~~~le~~v~~~----~----~~K~~iLVlNK~DL~p~~~~~~W~~yf~ 138 (509)
+...+..+|++|+|+|+. ++..+. .+..++..+ . .+.|++||+||+||.+........+.+.
T Consensus 112 ~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~ 182 (193)
T 2ged_A 112 LKTRAKFVKGLIFMVDSTVDPKKLT--TTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALE 182 (193)
T ss_dssp HHHHGGGEEEEEEEEETTCCHHHHH--HHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHH
T ss_pred HHhhcccCCEEEEEEECCCCchhHH--HHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHH
Confidence 334566799999999998 443221 222233222 1 3789999999999987655555555543
No 500
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=95.98 E-value=0.0048 Score=66.40 Aligned_cols=26 Identities=27% Similarity=0.535 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCHhHHHHHHhcCC
Q 010472 229 KNVIVGFVGYPNVGKSSTINALVGQK 254 (509)
Q Consensus 229 ~g~~vglvG~nGaGKSTLln~L~G~~ 254 (509)
....++|||.+|||||||+|.|++..
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~ 65 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGET 65 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC--
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999999865
Done!