Query 010474
Match_columns 509
No_of_seqs 260 out of 707
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 07:35:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010474.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010474hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rzv_A STAM-binding protein; u 100.0 2.7E-48 9.1E-53 375.3 13.3 171 332-509 41-211 (211)
2 2znr_A AMSH-like protease; met 100.0 2E-47 6.7E-52 361.4 12.8 171 332-509 8-178 (178)
3 2og4_A PRE-mRNA-splicing facto 99.9 6E-29 2.1E-33 243.8 4.3 143 332-479 37-189 (254)
4 4b4t_V 26S proteasome regulato 99.9 1.2E-27 4.1E-32 243.5 13.6 131 332-465 24-163 (306)
5 2xze_A STAM-binding protein; h 99.9 5.8E-27 2E-31 214.7 11.6 107 6-112 14-121 (146)
6 2p8r_A PRP8, PRE-mRNA-splicing 99.9 2.6E-27 9E-32 234.4 5.0 140 332-479 38-191 (273)
7 2a9u_A Ubiquitin carboxyl-term 99.9 1.9E-24 6.4E-29 197.2 9.3 95 17-112 27-123 (144)
8 2kks_A Uncharacterized protein 99.9 1.3E-22 4.4E-27 185.3 13.1 121 334-461 1-125 (146)
9 2kcq_A MOV34/MPN/PAD-1 family; 99.9 8.9E-23 3.1E-27 187.7 9.6 120 335-461 1-127 (153)
10 1oi0_A AF2198, hypothetical pr 99.8 1.6E-18 5.5E-23 153.9 8.9 108 334-459 3-111 (124)
11 2o95_A 26S proteasome non-ATPa 99.7 3.7E-17 1.3E-21 154.7 13.5 129 332-465 7-146 (187)
12 3sbg_A PRE-mRNA-splicing facto 99.7 2E-17 6.8E-22 174.3 7.0 136 332-474 348-489 (565)
13 4e0q_A COP9 signalosome comple 99.6 3.3E-15 1.1E-19 136.0 11.3 115 332-451 5-127 (141)
14 4b4t_U RPN8, 26S proteasome re 99.0 5.8E-09 2E-13 107.4 14.4 125 332-460 5-140 (338)
15 2cpt_A SKD1 protein, vacuolar 96.6 0.0066 2.2E-07 53.2 8.6 72 27-102 13-84 (117)
16 4a5x_A MITD1, MIT domain-conta 96.5 0.0099 3.4E-07 49.2 8.2 69 30-103 14-82 (86)
17 1wfd_A Hypothetical protein 15 96.4 0.015 5.1E-07 48.8 8.9 72 28-104 11-82 (93)
18 2v6x_A Vacuolar protein sortin 96.2 0.019 6.6E-07 47.0 8.2 73 26-103 7-79 (85)
19 2w2u_A Hypothetical P60 katani 95.9 0.012 4E-07 48.5 5.7 72 24-100 11-82 (83)
20 2v6y_A AAA family ATPase, P60 95.6 0.018 6.1E-07 47.3 5.6 69 28-101 7-75 (83)
21 2ymb_A MITD1, MIT domain-conta 94.2 0.008 2.7E-07 59.4 0.0 71 28-103 19-89 (257)
22 2qlc_A DNA repair protein RADC 92.7 0.53 1.8E-05 41.5 9.1 82 341-429 10-91 (126)
23 2zan_A Vacuolar protein sortin 84.4 0.19 6.6E-06 52.7 0.0 74 27-104 6-79 (444)
24 2rpa_A Katanin P60 ATPase-cont 42.1 66 0.0023 25.8 6.5 62 32-98 12-73 (78)
25 2v5f_A Prolyl 4-hydroxylase su 31.5 1.3E+02 0.0044 23.8 6.9 32 37-72 51-82 (104)
26 2xev_A YBGF; tetratricopeptide 28.0 96 0.0033 24.2 5.5 34 33-70 40-73 (129)
27 1a17_A Serine/threonine protei 26.7 1E+02 0.0035 25.0 5.6 37 25-61 6-42 (166)
28 2xcb_A PCRH, regulatory protei 25.0 1.7E+02 0.0058 23.8 6.7 34 35-72 55-88 (142)
29 3sz7_A HSC70 cochaperone (SGT) 23.9 2.4E+02 0.0083 23.2 7.6 30 33-62 46-75 (164)
30 1wol_A ST0689, 122AA long cons 23.5 1.2E+02 0.0042 25.2 5.6 31 25-55 4-34 (122)
31 1a17_A Serine/threonine protei 23.0 2.4E+02 0.0081 22.6 7.2 27 35-61 50-76 (166)
32 2fbn_A 70 kDa peptidylprolyl i 22.9 3.5E+02 0.012 23.0 9.8 47 23-73 29-75 (198)
33 2hsb_A Hypothetical UPF0332 pr 22.3 1.6E+02 0.0056 24.3 6.1 27 25-51 5-31 (126)
34 3n71_A Histone lysine methyltr 22.2 1.9E+02 0.0064 30.4 7.8 43 31-73 392-435 (490)
35 1ufb_A TT1696 protein; structu 21.3 1.4E+02 0.0047 25.0 5.4 32 25-56 4-35 (127)
36 2hr2_A Hypothetical protein; a 20.7 1.7E+02 0.0059 26.1 6.2 44 24-72 4-47 (159)
37 1elr_A TPR2A-domain of HOP; HO 20.3 1.5E+02 0.005 22.6 5.1 32 31-62 3-34 (131)
No 1
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=100.00 E-value=2.7e-48 Score=375.31 Aligned_cols=171 Identities=46% Similarity=0.855 Sum_probs=163.3
Q ss_pred ceEEEECHHHHHHHHHHHhcCCCCCcceEEEeeceecCCEEEEEEEEecCCCCCCcccccCChHHHHHHHhhCCCcceEE
Q 010474 332 PLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSLFPLGW 411 (509)
Q Consensus 332 ~~~V~I~~~ll~~~l~hA~~nt~~~~EvcGlL~G~~~~~~l~Vt~~~~p~q~~t~~~~~~~de~e~~~~~~~~gl~~vGW 411 (509)
+++|.||++++.+||.||+.++.+++|+||+|+|+..++.+.|+++++++|.+++++|++.+++++|++++.+|+.+|||
T Consensus 41 lr~v~Ipk~ll~kfL~~A~~~tp~~~EvcGlL~Gk~~~~~~~I~~v~~ppq~gt~~~v~~~~~~e~~~~~~~~~l~~vGW 120 (211)
T 3rzv_A 41 LRHVVVPGRLCPQFLQLASANTARGVATCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTENEEELFLIQDQQGLITLGW 120 (211)
T ss_dssp BCCEEEETTHHHHHHHHHHHHHHTTCCCEEEEEEEEETTEEEEEEEEECCEEECSSCEEECCHHHHHHHHHHHTCEEEEE
T ss_pred cEEEEECHHHHHHHHHHHHhCCCCCceEEEEEEeEcCCCCEEEEEEEeCCccCCCCceeccChHHHHHHHhhCCCEEEEE
Confidence 79999999999999999999875679999999999998999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCCCCCHHHHHhHHHhhhhCCCeEEEEEcCCCCCCcccEEEEcCCCCchhhhccccCCCccCCCCCCCCCCccc
Q 010474 412 IHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATRKHGIFRLTSPGGMSVIRQCQQRGFHPHDPPPDGGPIYKP 491 (509)
Q Consensus 412 yHSHP~~~afpSs~DL~tq~sYQ~~~pe~IaIV~sP~~~~~~~gaFRLt~p~g~~~i~~c~~~~Fhph~~~~~~~~ly~~ 491 (509)
|||||+++||||++||+||++||.++|++|+|||||... ++|||||+ |+||+++.+|+++|||||.+ +++||+.
T Consensus 121 yHSHP~~~~~pS~~Dl~tq~~~q~~~~~~I~IVvsP~~~--~lgaFrLt-p~G~~~~~~c~~~~fhph~~---~~~~~~~ 194 (211)
T 3rzv_A 121 IHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKFQ--ETGFFKLT-DHGLEEISSCRQKGFHPHSK---DPPLFCS 194 (211)
T ss_dssp EEECTTSCSCCCHHHHHHHHHHHHHCTTCEEEEEETTTT--EEEEEEEC-HHHHHHHHHCCCCSSCCCCC---SSCSEEE
T ss_pred EeCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCC--eeeEEEec-cchhhhhhccccCCcccCCC---CCCceEE
Confidence 999999999999999999999999999999999999976 69999999 68999999999999999976 5899999
Q ss_pred CCceeecCCCceEEeeCC
Q 010474 492 CTDVYMNPNLKFDVIDLR 509 (509)
Q Consensus 492 ~~hV~~~~~~~f~vvDLR 509 (509)
|+||++++.+ |+|+|||
T Consensus 195 ~~hv~~~~~~-~~~~dlr 211 (211)
T 3rzv_A 195 CSHVTVVDRA-VTITDLR 211 (211)
T ss_dssp CSSEEEECCC-CEEEECC
T ss_pred eeeEEEcCCE-eEEEeCC
Confidence 9999999887 9999999
No 2
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=100.00 E-value=2e-47 Score=361.44 Aligned_cols=171 Identities=46% Similarity=0.850 Sum_probs=162.7
Q ss_pred ceEEEECHHHHHHHHHHHhcCCCCCcceEEEeeceecCCEEEEEEEEecCCCCCCcccccCChHHHHHHHhhCCCcceEE
Q 010474 332 PLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSLFPLGW 411 (509)
Q Consensus 332 ~~~V~I~~~ll~~~l~hA~~nt~~~~EvcGlL~G~~~~~~l~Vt~~~~p~q~~t~~~~~~~de~e~~~~~~~~gl~~vGW 411 (509)
+++|.||.+++++|++||+.++.++.|+||+|+|+..++.+.|+++|+++|.+++++|++.++++++++++++|+.+|||
T Consensus 8 ~~~v~i~~~~l~k~l~hA~~~~~~~~EvcGlL~G~~~~~~~~V~~v~~~pq~~t~~~~~~~~~~e~~~~~~~~~l~~vGw 87 (178)
T 2znr_A 8 LRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDMENVEELFNVQDQHDLLTLGW 87 (178)
T ss_dssp CCCEEEETTHHHHHHHHHHHHHTTTCCCEEEEEEEEETTEEEEEEEEECCEEEETTEEEECCHHHHHHHHHHHTCEEEEE
T ss_pred cEEEEECHHHHHHHHHHHHhCCCCCceEEEEEeeEecCCCeEEEEEEeCCcCCCCCeeccCCHHHHHHHHHhCCCEEEEE
Confidence 78999999999999999999875668999999999988899999999999999999999999999999999999999999
Q ss_pred EcCCCCCCCCCCHHHHHhHHHhhhhCCCeEEEEEcCCCCCCcccEEEEcCCCCchhhhccccCCCccCCCCCCCCCCccc
Q 010474 412 IHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATRKHGIFRLTSPGGMSVIRQCQQRGFHPHDPPPDGGPIYKP 491 (509)
Q Consensus 412 yHSHP~~~afpSs~DL~tq~sYQ~~~pe~IaIV~sP~~~~~~~gaFRLt~p~g~~~i~~c~~~~Fhph~~~~~~~~ly~~ 491 (509)
|||||+++||||++|+++|++||+|+|++|+|||||..+ .+++|||+ |+||+++++|+++|||||.+ +++||+.
T Consensus 88 yHSHP~~~~~pS~~Dv~tq~~yq~~~~~~v~iIvsp~~~--~~~afrl~-~~g~~~~~~~~~~~f~p~~~---~~~~~~~ 161 (178)
T 2znr_A 88 IHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHK--DTGIFRLT-NAGMLEVSACKKKGFHPHTK---EPRLFSI 161 (178)
T ss_dssp EEECSSSCSCCCHHHHHHHHHHHHHCTTCEEEEEEGGGT--EEEEEEEC-HHHHHHHHHCCCCSSCCCCC---SSCSEEE
T ss_pred EeCCCCCCCCCCHHHHHHHHHHHhhcCCEEEEEEcCCCC--cceEEEEE-CCcEeeecccCCCCcccCCC---CCCceEE
Confidence 999999999999999999999999999999999999876 48999999 68999999999999999975 6899999
Q ss_pred CCceeecCCCceEEeeCC
Q 010474 492 CTDVYMNPNLKFDVIDLR 509 (509)
Q Consensus 492 ~~hV~~~~~~~f~vvDLR 509 (509)
|+||++++++ |+|+|||
T Consensus 162 ~~~~~~~~~~-~~~~~~r 178 (178)
T 2znr_A 162 CKHVLVKDIK-IIVLDLR 178 (178)
T ss_dssp CSSEEEECCC-CEEEECC
T ss_pred eceEEEeCCe-eEEEecC
Confidence 9999999998 9999999
No 3
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6e-29 Score=243.84 Aligned_cols=143 Identities=20% Similarity=0.316 Sum_probs=126.2
Q ss_pred ceEEEECHHHHHHHHHHHhcCCCCCcceEEEeeceecC---CEEEEEEEEecCCCCCCcccccCChHHHHHHHhhCCCcc
Q 010474 332 PLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKN---RKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSLFP 408 (509)
Q Consensus 332 ~~~V~I~~~ll~~~l~hA~~nt~~~~EvcGlL~G~~~~---~~l~Vt~~~~p~q~~t~~~~~~~de~e~~~~~~~~gl~~ 408 (509)
.+++.||.+++.+|+..|..+| |+||+|+|.... ++.+|+++++|+|.+++++|++.++..++++++..||++
T Consensus 37 ~~t~vlPknLlkkFi~IAD~~T----q~cG~LyG~~~~d~~~v~eI~~ivippQ~gt~~s~~~~~~~p~~~~~~l~dLe~ 112 (254)
T 2og4_A 37 QNVYVLPKNLLKKFIEISDVKI----QVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGDLPDTEGLEL 112 (254)
T ss_dssp SCEEEEEHHHHHHHHHTSCSSS----CCEEEEEEEECSSCTTEEEEEEEECCCEEEETTEEEECCCCCCTTSTTCTTCEE
T ss_pred CcEEEcCHHHHHHHHHHhhccc----eEEEEEEccCCCCCCCeEEEEEEEECCccCCCceEECCCcCccccchhhcCCEe
Confidence 5789999999999999999865 899999999953 589999999999999999999999888889999999999
Q ss_pred eEEEcCCCCCCCCCCHHHHHhHHHhhhhC-CCeEEEEEcCCCCCCcccEEEEcCCCCchhhhc------cccCCCccC
Q 010474 409 LGWIHTHPTQSCFMSSIDVHTHYSYQIML-PESVAIVMAPQDATRKHGIFRLTSPGGMSVIRQ------CQQRGFHPH 479 (509)
Q Consensus 409 vGWyHSHP~~~afpSs~DL~tq~sYQ~~~-pe~IaIV~sP~~~~~~~gaFRLt~p~g~~~i~~------c~~~~Fhph 479 (509)
+|||||||+++||||++||+||++||.|+ +++|+|||+|.....++++||||+ +|+++..+ +...||+|+
T Consensus 113 LGWIHTqptq~~fLSs~Dl~tH~~~~~~~~~eaIaIvcsftpgs~sl~af~LT~-~G~~Wg~~n~d~~~~~~~g~~~~ 189 (254)
T 2og4_A 113 LGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFSTPGSVSLSAYNLTD-EGYQWGEENKDIMNVLSEGFEPT 189 (254)
T ss_dssp EEEEEEESSCCSSCCHHHHHHHHHHHTTTCTTCEEEEEEEETTEEEEEEEEECH-HHHHHHHTCCSCCSSCCTTCCGG
T ss_pred cceEeeCCCCCcccCHHHHHHHHHHHHhcCCCeEEEEEecCCCCceeEEEEcCh-hhhhhhhhcccccccCCCCCCcc
Confidence 99999999999999999999999999966 999999999864334589999994 79985533 445578765
No 4
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.2e-27 Score=243.53 Aligned_cols=131 Identities=24% Similarity=0.435 Sum_probs=115.2
Q ss_pred ceEEEECHHHHHHHHHHHhcCCCCCcceEEEeeceec-CCEEEEEEEEecCCCCCCcccccCChHHHHHHH-----hhCC
Q 010474 332 PLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLK-NRKFYITALIIPKQESTSDSCQATNEEEIFEVQ-----DKRS 405 (509)
Q Consensus 332 ~~~V~I~~~ll~~~l~hA~~nt~~~~EvcGlL~G~~~-~~~l~Vt~~~~p~q~~t~~~~~~~de~e~~~~~-----~~~g 405 (509)
...|+|++.++++|++||+++. +.||||+|+|... ++++.|+++|++++.++++.|+..+++.+.++. .+++
T Consensus 24 ~~~V~is~lallkm~~Ha~~~~--~~eV~GlLlG~~~~~~~v~Vt~~f~~P~~~~~~~v~~~d~~y~~~m~~~~~~v~~~ 101 (306)
T 4b4t_V 24 KETVYISSIALLKMLKHGRAGV--PMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQTGRD 101 (306)
T ss_dssp CCEEEECHHHHHHHHHHTCSCS--SSCCEEEEEEEEETTTEEEEEEEECCCCEESSSCEECCCHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEeHHHHHHHHHHhcCCC--CceEEEEEeeEEcCCeEEEEEEEEeCCcCCCCCchhcCCHHHHHHHHHHHHHhCCC
Confidence 6889999999999999999954 9999999999865 558999999999999999999888876544442 2678
Q ss_pred CcceEEEcCCCCCCCCCCHHHHHhHHHhhhhCCCeEEEEEcCCCCCC---cccEEEEcCCCCc
Q 010474 406 LFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATR---KHGIFRLTSPGGM 465 (509)
Q Consensus 406 l~~vGWyHSHP~~~afpSs~DL~tq~sYQ~~~pe~IaIV~sP~~~~~---~~gaFRLt~p~g~ 465 (509)
+.+||||||||.++||||++||+||+.||.+.+++|+||+||..+.. .++|||++++ |+
T Consensus 102 ~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~t~~G~~~i~Afr~~~~-~~ 163 (306)
T 4b4t_V 102 QMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLIDT-GA 163 (306)
T ss_dssp CCCSEEEEECCSSSCCCCHHHHHHHHHHHHHCSSCEEEEECSSSSSSCSSCEEEEECCHH-HH
T ss_pred cceeeEEecCCCCCCcCCHHHHHHHHHHHhcCCCcEEEEECCCcCCCCceeeeEEEecCc-cc
Confidence 89999999999999999999999999999999999999999987754 3799999964 44
No 5
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=99.94 E-value=5.8e-27 Score=214.73 Aligned_cols=107 Identities=24% Similarity=0.405 Sum_probs=95.7
Q ss_pred cchhHHHhhcCccccCCCcHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHHH
Q 010474 6 EGINIAASAQRLDVDNRIALRYYYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKK 85 (509)
Q Consensus 6 ~~~~l~~~a~~~e~n~~iplr~Y~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~Lv~ekLp~Hpdyk~~~~~~k~~~~~ 85 (509)
..-+|+++|.+++||++|||++|||+|++|+++|.+|+++||+++|||+|+||++||+++||+||||++....++..+.+
T Consensus 14 ~i~~L~~~A~~~~v~~~i~l~~ylrta~~llr~A~~y~~egd~e~AYily~R~~~L~~e~IpkHpdy~~~~~~~~~~~l~ 93 (146)
T 2xze_A 14 RVRALSQLGSAVEVNEDIPPRRYFRSGVEIIRMASIYSEEGNIEHAFILYNKYITLFIEKLPKHRDYKSAVIPEKKDTVK 93 (146)
T ss_dssp HHHHHHHHHTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTGGGSTTTTTCCCTTHHHHHH
T ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHcccCccchhhhhHHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999766445555556
Q ss_pred HHHHH-HHHHHhhCHHHHHHHHHHHHhh
Q 010474 86 KLLNA-LSELEELQPAVQQKINELNRKK 112 (509)
Q Consensus 86 ~l~~v-l~~lE~LK~~l~~~Y~~~~~~~ 112 (509)
+++.+ ++++|.||+.|+++|+++++.+
T Consensus 94 ~l~~~~~~~lE~LK~~L~~rY~~e~~~~ 121 (146)
T 2xze_A 94 KLKEIAFPKAEELKAELLKRYTKEYTEY 121 (146)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665 9999999999999999766544
No 6
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=99.93 E-value=2.6e-27 Score=234.38 Aligned_cols=140 Identities=19% Similarity=0.327 Sum_probs=120.8
Q ss_pred ceEEEECHHHHHHHHHHHhcCCCCCcceEEEeeceec---CCEEEEEEEEecCCCCCCcccccCChHHHHHHHhhCCCcc
Q 010474 332 PLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLK---NRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSLFP 408 (509)
Q Consensus 332 ~~~V~I~~~ll~~~l~hA~~nt~~~~EvcGlL~G~~~---~~~l~Vt~~~~p~q~~t~~~~~~~de~e~~~~~~~~gl~~ 408 (509)
.+++.||.+++.+|+..|..+| |+||+|+|+.. .++.+|+++++|+|.++.++|++.++...++++ .+|++
T Consensus 38 ~~t~vlPknllkkFi~IADlrT----q~~G~LyG~s~~d~~~vkeI~~ivipPQ~gt~~sv~~~~~~p~~~~l--~dLe~ 111 (273)
T 2p8r_A 38 GYTYILPKNILKKFITISDLRT----QIAGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQLPDHELL--RDFEP 111 (273)
T ss_dssp SCEEEEEHHHHHHHHHTSCSSS----CCEEEEEEECCTTCTTEEEEEEEECCSBEECSSCEECCSSCCCCTTT--TTSEE
T ss_pred ccEEEecHHHHHHHHHHhhccc----eEEEEEeccCCCCCCCeEEEEEEEECCccCCCceEECCCcCcchhhh--ccccc
Confidence 5789999999999999999865 89999999985 368999999999999999999998865555665 99999
Q ss_pred eEEEcCCCCCCCCCCHHHHHhHHHhhhh---C--CCeEEEEEcCCCCCCcccEEEEcCCCCchhh------hccccCCCc
Q 010474 409 LGWIHTHPTQSCFMSSIDVHTHYSYQIM---L--PESVAIVMAPQDATRKHGIFRLTSPGGMSVI------RQCQQRGFH 477 (509)
Q Consensus 409 vGWyHSHP~~~afpSs~DL~tq~sYQ~~---~--pe~IaIV~sP~~~~~~~gaFRLt~p~g~~~i------~~c~~~~Fh 477 (509)
||||||||+++||||++||+||++||.| | +++|+|||++.....++++|+||+ +|+++. ..+ ..|||
T Consensus 112 LGWIHTqp~e~~~LSs~Dl~tH~~~~~~~~~~~~~e~I~Ivcsftpgs~sl~af~LT~-~G~~Wg~~n~d~~~~-~~Gf~ 189 (273)
T 2p8r_A 112 LGWMHTQPNELPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSFTPGSVSLTAYKLTP-SGYEWGKANTDKGNN-PKGYM 189 (273)
T ss_dssp EEEEEEESSCCSSCCHHHHHHHHHHHHHCTTCCTTTCEEEEEEEETTEEEEEEEEECH-HHHHHHHHCCCCSSC-CTTCC
T ss_pred cceEeeCCCCCCCcCHHHHHHHHHHHhcccccCCCceEEEEEecCCCCceeEEEEcCh-HHhhhhhhccccccC-CCCCC
Confidence 9999999999999999999999999986 6 599999999864434589999995 698733 223 67999
Q ss_pred cC
Q 010474 478 PH 479 (509)
Q Consensus 478 ph 479 (509)
|+
T Consensus 190 p~ 191 (273)
T 2p8r_A 190 PT 191 (273)
T ss_dssp GG
T ss_pred cc
Confidence 87
No 7
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=99.90 E-value=1.9e-24 Score=197.25 Aligned_cols=95 Identities=20% Similarity=0.243 Sum_probs=86.1
Q ss_pred ccccCCCcHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHH-HHHHHHHHHHHHH
Q 010474 17 LDVDNRIALRYYYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLY-LKKKLLNALSELE 95 (509)
Q Consensus 17 ~e~n~~iplr~Y~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~Lv~ekLp~Hpdyk~~~~~~k~~-~~~~l~~vl~~lE 95 (509)
..+|.+||+++|||||++|+++|.+|++|||+|+||||||||++|| ++||+||||+......+.. .+++++.||++||
T Consensus 27 ~~~d~~ipl~~y~rsa~~L~r~A~~y~~EGd~E~AYilymRy~~L~-~kIpkHpdyk~~~~~~k~~l~k~~~~~vl~~lE 105 (144)
T 2a9u_A 27 EVKPEKISTKSYVHSALKIFKTAEECRLDRDEERAYVLYMKYVTVY-NLIKKRPDFKQQQDYFHSILGPGNIKKAVEEAE 105 (144)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTTSHHHHHTHHHHHHHHCHHHHHHHHHHHH
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHhcCcchhhhhHHHHHHHHHhHHHHHHHHHH
Confidence 6688889999999999999999999999999999999999999999 7999999999876555555 3688999999999
Q ss_pred hhCHHHHHHHHH-HHHhh
Q 010474 96 ELQPAVQQKINE-LNRKK 112 (509)
Q Consensus 96 ~LK~~l~~~Y~~-~~~~~ 112 (509)
+||+.|+++|++ +++++
T Consensus 106 ~LK~~L~~rYe~~e~~~~ 123 (144)
T 2a9u_A 106 RLSESLKLRYEEAEVRKK 123 (144)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999 66644
No 8
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=99.88 E-value=1.3e-22 Score=185.25 Aligned_cols=121 Identities=16% Similarity=0.248 Sum_probs=103.0
Q ss_pred EEEECHHHHHHHHHHHhcCCCCCcceEEEeeceecCCEEEEEEEEecCCCCCCcccccCChHHHHHHH---hhCCCcceE
Q 010474 334 QLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQ---DKRSLFPLG 410 (509)
Q Consensus 334 ~V~I~~~ll~~~l~hA~~nt~~~~EvcGlL~G~~~~~~l~Vt~~~~p~q~~t~~~~~~~de~e~~~~~---~~~gl~~vG 410 (509)
+|.|+..++.+|++||+.+. |.|+||+|+|+..++.+.|+.++++++..++...+..|++++++++ +.+|+.+||
T Consensus 1 ml~i~~~~l~~i~~ha~~~~--p~E~cGlL~G~~~~~~~~v~~~~p~~n~~~~~~~f~~dp~~~~~~~~~~~~~g~~ivG 78 (146)
T 2kks_A 1 MITLTKKQMEEMLAHARQAL--PNEACGLLGGRRDGDDRWVERVYPLNNLDQSPEHFSMDPREQLTAVKDMRKNGWVMLG 78 (146)
T ss_dssp CEEEEHHHHHHHHHHHHHHT--TSCEEEEEEEEEETTEEEEEEEECCCCCSCCSSSCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred CEEECHHHHHHHHHHHHhcC--CcceEEEEEEEEcCCCcEEEEEEECCCcCCCCceEEECHHHHHHHHHHHHHCCCEEEE
Confidence 48899999999999999965 9999999999998888999999998875444445667888877764 678999999
Q ss_pred EEcCCCCCCCCCCHHHHHhHHHhhhhCCCeEEEEEcCCC-CCCcccEEEEcC
Q 010474 411 WIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQD-ATRKHGIFRLTS 461 (509)
Q Consensus 411 WyHSHP~~~afpSs~DL~tq~sYQ~~~pe~IaIV~sP~~-~~~~~gaFRLt~ 461 (509)
||||||+++|+||.+|+.++ ..|++++||+++.. ....+++|++.+
T Consensus 79 ~~HSHP~~~~~PS~~D~~~~-----~~~~~~~lIvs~~~~~~~~~~af~~~~ 125 (146)
T 2kks_A 79 NFHSHPATPARPSAEDKRLA-----FDPSLSYLIISLAEPQKPVCKSFLIKK 125 (146)
T ss_dssp EEEEESSSCSSCCHHHHTTC-----CSSSCEEEEEECSCSSSCEEEEEEECS
T ss_pred EEeCCCcCCCCCCHHHHHhh-----hcCCCeEEEEEccCCCceEEEEEEEeC
Confidence 99999999999999999863 46899999999876 334689999964
No 9
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=99.88 E-value=8.9e-23 Score=187.71 Aligned_cols=120 Identities=15% Similarity=0.269 Sum_probs=100.3
Q ss_pred EEECHHHHHHHHHHHhcCCCCCcceEEEeeceec-CCEEEEEEEEecCCC--CCCcccccCChHHHHHHH---hhCCCcc
Q 010474 335 LHISTTMMDNFMKLAKSNTDKNLETCGILAGSLK-NRKFYITALIIPKQE--STSDSCQATNEEEIFEVQ---DKRSLFP 408 (509)
Q Consensus 335 V~I~~~ll~~~l~hA~~nt~~~~EvcGlL~G~~~-~~~l~Vt~~~~p~q~--~t~~~~~~~de~e~~~~~---~~~gl~~ 408 (509)
|.|+..++.+|+.||+... |.|+||+|+|+.. ++.+.|+.+++.++. .++..++.++++++++++ +.+|+.+
T Consensus 1 l~i~~~~l~~i~~ha~~~~--p~E~cGlL~G~~~~~~~~~v~~~~p~~n~~~~~~~~~f~~dp~~~~~~~~~~~~~g~~i 78 (153)
T 2kcq_A 1 MKTTPDILDQIRVHGADAY--PEEGCGFLLGTVTDDGDNRVAALHRATNRRSEQRTRRYELTADDYRAADAAAQEQGLDV 78 (153)
T ss_dssp CBCCHHHHHHHHHHHHHHT--TSCCCEEEEEEECTTSCEEEEEEEESSCCCCCCCSCCSSCCCCSHHHHHHHHHHHTCEE
T ss_pred CEeCHHHHHHHHHHHHhcC--CcceEEEEEEeeccCCCeEEEEEEECCCCCCCCCCcEEEECHHHHHHHHHHHHHCCCeE
Confidence 4689999999999999955 9999999999987 778999999999876 555566677777666653 5789999
Q ss_pred eEEEcCCCCCCCCCCHHHHHhHHHhhhhCCCeEEEEEcCCCCC-CcccEEEEcC
Q 010474 409 LGWIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDAT-RKHGIFRLTS 461 (509)
Q Consensus 409 vGWyHSHP~~~afpSs~DL~tq~sYQ~~~pe~IaIV~sP~~~~-~~~gaFRLt~ 461 (509)
||||||||+++|+||.+|+.+ ++.|++++|||++.+.. ..+++||+++
T Consensus 79 vG~yHSHP~~~~~PS~~D~~~-----~~~~~~~~lIvs~~~~~~~~~~af~~~~ 127 (153)
T 2kcq_A 79 VGVYHSHPDHPARPSATDLEE-----ATFPGFTYVIVSVRDGAPEALTAWALAP 127 (153)
T ss_dssp EEEEEECSSSSSSCCHHHHHT-----CCCTTSEEEEEEEETTEEEEEEEEEECT
T ss_pred EEEEeCCCCCCCCCCHHHHHh-----hhcCCCeEEEEECCCCCccEEEEEEEeC
Confidence 999999999999999999965 24689999999985542 3589999974
No 10
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=99.75 E-value=1.6e-18 Score=153.93 Aligned_cols=108 Identities=20% Similarity=0.217 Sum_probs=80.3
Q ss_pred EEEECHHHHHHHHHHHhcCCCCCcceEEEeeceecCCEEEEEEEEecCCCCCCcccccCChHHHHH-HHhhCCCcceEEE
Q 010474 334 QLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFE-VQDKRSLFPLGWI 412 (509)
Q Consensus 334 ~V~I~~~ll~~~l~hA~~nt~~~~EvcGlL~G~~~~~~l~Vt~~~~p~q~~t~~~~~~~de~e~~~-~~~~~gl~~vGWy 412 (509)
+|.|+..++.+|++||++.. |.|+||+|+|+.. .|+++++.++.+++. ...|. .++.+|+.+||||
T Consensus 3 ~v~i~~~~l~~i~~ha~~~~--P~E~cGlL~g~~~----~v~~~~~~p~~~~~~-------~~~f~~~~~~~~~~ivG~~ 69 (124)
T 1oi0_A 3 SMKISRGLLKTILEAAKSAH--PDEFIALLSGSKD----VMDELIFLPFVSGSV-------SAVIHLDMLPIGMKVFGTV 69 (124)
T ss_dssp SCEECHHHHHHHHHHHHHHT--TSCCEEEEEESTT----EECEEEECCCCC--------------------CCCEEEEEE
T ss_pred EEEEcHHHHHHHHHHHHhcC--CCeeEEEEecccC----EEEEEEECCCCCCCc-------CceeeeeeccCCCEEEEEE
Confidence 58899999999999999965 9999999999874 688888777443321 11232 2456899999999
Q ss_pred cCCCCCCCCCCHHHHHhHHHhhhhCCCeEEEEEcCCCCCCcccEEEE
Q 010474 413 HTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATRKHGIFRL 459 (509)
Q Consensus 413 HSHP~~~afpSs~DL~tq~sYQ~~~pe~IaIV~sP~~~~~~~gaFRL 459 (509)
||||..+++||.+|+.++ .+++.++||+++......+++|+.
T Consensus 70 HSHP~~~~~PS~~D~~~~-----~~~~~~~lIvs~~~~~~~~~~f~~ 111 (124)
T 1oi0_A 70 HSHPSPSCRPSEEDLSLF-----TRFGKYHIIVCYPYDENSWKCYNR 111 (124)
T ss_dssp EEESSSCCSCCHHHHHHH-----HHSCSEEEEEETTCCTTCEEEEET
T ss_pred EECcCCCCccCHHHHHhh-----hcCCCEEEEEEccCCCceEEEEec
Confidence 999999999999999873 358899999998664334566653
No 11
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=99.72 E-value=3.7e-17 Score=154.69 Aligned_cols=129 Identities=10% Similarity=0.132 Sum_probs=100.9
Q ss_pred ceEEEECHHHHHHHHHHHhcCC--CCCcceEEEeeceecCCEEEEEEEEecCCCCCCcc--cccCChHHHHHH---Hh--
Q 010474 332 PLQLHISTTMMDNFMKLAKSNT--DKNLETCGILAGSLKNRKFYITALIIPKQESTSDS--CQATNEEEIFEV---QD-- 402 (509)
Q Consensus 332 ~~~V~I~~~ll~~~l~hA~~nt--~~~~EvcGlL~G~~~~~~l~Vt~~~~p~q~~t~~~--~~~~de~e~~~~---~~-- 402 (509)
+..|.|.+.++.+|++||.+.. +.+.|+||+|+|...++.+.|+++|+.+...+... ....|.+.+..+ ..
T Consensus 7 ~~~V~i~plvllkI~~H~~r~~~~~~~~~V~G~LLG~~~~~~v~V~~~f~lp~~~~~~~~~~~~~d~ey~~~m~~~~~~v 86 (187)
T 2o95_A 7 VQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKV 86 (187)
T ss_dssp CSEEEECHHHHHHHHHHHHHHHHTTCCSCCEEEEEEEESSSEEEEEEEEEECEEECSSCTTSEEECHHHHHHHHHHHHTT
T ss_pred CCEEEEchHHHHHHHHHHhhhcccCCCcEEEEEEEEEEcCCEEEEEEEEEeCCcccCCCcchhhcCHHHHHHHHHHHHHh
Confidence 5789999999999999987631 14889999999999889999999999987654332 234555433222 22
Q ss_pred hCCCcceEEEcCCCCCCCCCCHHHHHhHHHhhhhCCCeEEEEEcCCCCC--CcccEEEEcCCCCc
Q 010474 403 KRSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDAT--RKHGIFRLTSPGGM 465 (509)
Q Consensus 403 ~~gl~~vGWyHSHP~~~afpSs~DL~tq~sYQ~~~pe~IaIV~sP~~~~--~~~gaFRLt~p~g~ 465 (509)
..++.+||||||||.. |..|+.+|..||.+.|.+|+||+||.... ..+++|++.+ .+.
T Consensus 87 ~~~~~iVGWY~s~~~~----s~~d~~i~~~~~~~~~~~v~Livd~~~~~~~l~i~ay~~~~-~~~ 146 (187)
T 2o95_A 87 NARERIVGWYHTGPKL----HKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVE-EVH 146 (187)
T ss_dssp SSSCEEEEEEECCSSC----CTTHHHHHHHHTTTCTTCEEEEECCCTTC-CCSEEEEEEEE-ECC
T ss_pred CCCCCEEEEEcCCCcC----CcccHHHHHHHHhcCCCCEEEEECCCCCCCCcCeEEEEEec-hhc
Confidence 5689999999999975 77888888889999999999999997653 3479999973 344
No 12
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=99.68 E-value=2e-17 Score=174.27 Aligned_cols=136 Identities=17% Similarity=0.251 Sum_probs=110.1
Q ss_pred ceEEEECHHHHHHHHHHHhcCCCCCcceEEEeeceecC---CEEEEEEEEecCCCCCCcccccC--ChHHHHHHHhhCCC
Q 010474 332 PLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKN---RKFYITALIIPKQESTSDSCQAT--NEEEIFEVQDKRSL 406 (509)
Q Consensus 332 ~~~V~I~~~ll~~~l~hA~~nt~~~~EvcGlL~G~~~~---~~l~Vt~~~~p~q~~t~~~~~~~--de~e~~~~~~~~gl 406 (509)
-..+.||.+++.+|+..|..+| ++||+|+|.... ++.+|+++++|+|.|++++|++. .+.++| +...||
T Consensus 348 ~~tyVlPkNLLkKFI~IADlrT----QicGyLyG~sp~dn~nVkEI~cIVipPQ~Gt~~sv~lp~lp~he~~--~~l~dL 421 (565)
T 3sbg_A 348 QNVYVLPKNLLKKFIEISDVKI----QVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGDL--PDTEGL 421 (565)
T ss_dssp SCEEEEEHHHHHHHHHHSCSSS----CCEEEEEEEEETTEEEEEEEEEEECCCEEECSSCEEECCCCCCTTS--TTCTTC
T ss_pred CcEEEccHHHHHHHHHHhhccc----eeEEEEecCCCCCCCCeEEEEEEEECCccCCCceEECCCCCccccc--cccccC
Confidence 4679999999999999999865 899999999863 68999999999999999999885 222222 236899
Q ss_pred cceEEEcCCCCCCCCCCHHHHHhHHHhhhhC-CCeEEEEEcCCCCCCcccEEEEcCCCCchhhhccccC
Q 010474 407 FPLGWIHTHPTQSCFMSSIDVHTHYSYQIML-PESVAIVMAPQDATRKHGIFRLTSPGGMSVIRQCQQR 474 (509)
Q Consensus 407 ~~vGWyHSHP~~~afpSs~DL~tq~sYQ~~~-pe~IaIV~sP~~~~~~~gaFRLt~p~g~~~i~~c~~~ 474 (509)
+++||+||||+++||||+.||+||++.-... ..+|.|.|+-.-.+-.+.||.|| ++|+++.++-++.
T Consensus 422 e~LGWIHTqp~et~fLSs~Dl~THakl~~~n~~~~I~itvsftPGS~SLsAy~LT-~eGyeWG~~N~d~ 489 (565)
T 3sbg_A 422 ELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFSTPGSVSLSAYNLT-DEGYQWGEENKDI 489 (565)
T ss_dssp EEEEEEEEESSCCSSCCHHHHHHHHHHHSSSCTTCEEEEEEEETTEEEEEEEEEC-HHHHHHHHTTTTC
T ss_pred EecceeeecCCcccccCHHHHHHHHHHHHhCCCCeEEEEEEecCCceEEEEEecC-HhHHHHHhhcccc
Confidence 9999999999999999999999999875432 36788888854332247999999 5899987765553
No 13
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=99.60 E-value=3.3e-15 Score=135.99 Aligned_cols=115 Identities=14% Similarity=0.147 Sum_probs=86.0
Q ss_pred ceEEEECHHHHHHHHHHHhcC---CCCCcceEEEeeceecCCEEEEEEEEecCCCCCCcccccCChHHH---HHHH--hh
Q 010474 332 PLQLHISTTMMDNFMKLAKSN---TDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEI---FEVQ--DK 403 (509)
Q Consensus 332 ~~~V~I~~~ll~~~l~hA~~n---t~~~~EvcGlL~G~~~~~~l~Vt~~~~p~q~~t~~~~~~~de~e~---~~~~--~~ 403 (509)
...|.|.+.++.+|++|+.+. .+.+.+++|+|+|...++.+.|+++|+.+.+.+++.. ..|.+.+ ++.. -.
T Consensus 5 ~~~V~ihplvll~I~dH~~R~~~~~g~~~~V~G~LLG~~~~~~veV~nsF~~p~~~~~~~~-~~d~~y~~~m~~~~k~v~ 83 (141)
T 4e0q_A 5 SVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSFELKTDVIGDET-VINKDYYNKKEQQYKQVF 83 (141)
T ss_dssp CEEEEECHHHHHHHHHHHHCC------CCEEEEEEEEEEETTEEEEEEEEECCEEEETTEE-EECHHHHHHHHHHHHHHS
T ss_pred cEEEEEecHHHHHHHHHHhhhcccCCCCcEEEEEEEEEEeCCEEEEEEEEEecccCCCCce-eecHHHHHHHHHHHHHhC
Confidence 467999999999999999662 1236899999999999999999999999886554443 3344332 2222 25
Q ss_pred CCCcceEEEcCCCCCCCCCCHHHHHhHHHhhhhCCCeEEEEEcCCCCC
Q 010474 404 RSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDAT 451 (509)
Q Consensus 404 ~gl~~vGWyHSHP~~~afpSs~DL~tq~sYQ~~~pe~IaIV~sP~~~~ 451 (509)
.++.+|||||||| .++..|+..|..|+...+..|+||+||..+.
T Consensus 84 ~~e~iVGWY~s~~----~~~~~d~~i~~~~~~~~~~pV~L~~Dp~~~~ 127 (141)
T 4e0q_A 84 SDLDFIGWYTTGD----NPTADDIKIQRQIAAINECPIMLQLNPLSRS 127 (141)
T ss_dssp TTCEEEEEEEEEC-----------CHHHHHHHTTCCCEEEEESCSCCC
T ss_pred CCccEEEEEeCCC----CCCcchHHHHHHHHHHCCCCEEEEECCCccC
Confidence 7889999999997 4889999999999999999999999998764
No 14
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.96 E-value=5.8e-09 Score=107.36 Aligned_cols=125 Identities=10% Similarity=0.175 Sum_probs=88.9
Q ss_pred ceEEEECHHHHHHHHHHHhc-CCCCCcceEEEeeceecCCEEEEEEEEecCCCCCCc--ccccCChHH---HHHHH--hh
Q 010474 332 PLQLHISTTMMDNFMKLAKS-NTDKNLETCGILAGSLKNRKFYITALIIPKQESTSD--SCQATNEEE---IFEVQ--DK 403 (509)
Q Consensus 332 ~~~V~I~~~ll~~~l~hA~~-nt~~~~EvcGlL~G~~~~~~l~Vt~~~~p~q~~t~~--~~~~~de~e---~~~~~--~~ 403 (509)
...|.|-+.++.+|+.|+.. ....+..|+|.|+|...++.+.|+++|+.+...+.. .....|.+. +++.. -.
T Consensus 5 ~~~V~vhPlVll~I~dH~~R~~~~~~~rViG~LLG~~~~~~veV~nsF~~p~~e~~~~~~~~~~D~~y~~~m~~~~kkV~ 84 (338)
T 4b4t_U 5 HEKVTIAPLVLLSALDHYERTQTKENKRCVGVILGDANSSTIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMCKKIN 84 (338)
T ss_dssp CSEEEECHHHHHHHHHHHHHHTTTCCSCCEEEEEEEECSSEEEEEEEEECCEEECSSSTTCEEECHHHHHHHHHHHHHHC
T ss_pred CCEEEEecHHHHHHHHHHHHhhcCCCCeEEEEEEeEEcCCEEEEEEEEEeccccCCCCCccccccHHHHHHHHHHHhhcC
Confidence 46799999999999999765 223456899999999999999999999887532221 222234332 23322 25
Q ss_pred CCCcceEEEcCCCCCCCCCCHHHHHhHHHhhhhCC-CeEEEEEcCCCCCC--cccEEEEc
Q 010474 404 RSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLP-ESVAIVMAPQDATR--KHGIFRLT 460 (509)
Q Consensus 404 ~gl~~vGWyHSHP~~~afpSs~DL~tq~sYQ~~~p-e~IaIV~sP~~~~~--~~gaFRLt 460 (509)
.++.+||||||+|. ++..|+..|..|+...+ ..+.+++++..... .+++|...
T Consensus 85 ~~e~iVGWY~tg~~----~~~~d~~Ih~~~~~~~~~~pi~l~~d~~~~~~~lpi~aY~s~ 140 (338)
T 4b4t_U 85 AKEKLIGWYHSGPK----LRASDLKINELFKKYTQNNPLLLIVDVKQQGVGLPTDAYVAI 140 (338)
T ss_dssp CSCEEEEEEECCSS----CCSTHHHHHHHHGGGCCSCCCEEEECSCCCSSSCSEEEEEEE
T ss_pred ccCCEEEEEecCCC----CCccHHHHHHHHHhccCCCcEEEEecCCCCCCCcceEEEEee
Confidence 78899999999864 66778888888887664 55777778765532 36888754
No 15
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=96.64 E-value=0.0066 Score=53.17 Aligned_cols=72 Identities=11% Similarity=0.044 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHHHHHHHHHHHHHhhCHHHH
Q 010474 27 YYYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPAVQ 102 (509)
Q Consensus 27 ~Y~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~Lv~ekLp~Hpdyk~~~~~~k~~~~~~l~~vl~~lE~LK~~l~ 102 (509)
.++.-|..++++|--+-..||++.||.+|..=+.+|+.-|..-+ .....|..++.++..-|.++|.||..|+
T Consensus 13 ~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~----~~~~~k~~lr~K~~eYl~RAE~LK~~l~ 84 (117)
T 2cpt_A 13 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEA----QGDKAKQSIRAKCTEYLDRAEKLKEYLK 84 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57889999999999999999999999999999999987665311 1335678899999999999999999774
No 16
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=96.48 E-value=0.0099 Score=49.23 Aligned_cols=69 Identities=16% Similarity=0.193 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHHHHHHHHHHHHHhhCHHHHH
Q 010474 30 RIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPAVQQ 103 (509)
Q Consensus 30 Rsa~~llr~A~iy~~egn~e~AYily~Ry~~Lv~ekLp~Hpdyk~~~~~~k~~~~~~l~~vl~~lE~LK~~l~~ 103 (509)
-.|.+++++|--+..+||++.|+.+|..=+.+|+.-+..-+ .+..|..++.++..-+.++|+||..|++
T Consensus 14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~-----d~~~k~~lr~K~~eYl~RAE~LK~~l~~ 82 (86)
T 4a5x_A 14 TAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTK-----DNTKRCNLREKISKYMDRAENIKKYLDQ 82 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999999999987775433 2345778999999999999999998864
No 17
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=96.39 E-value=0.015 Score=48.76 Aligned_cols=72 Identities=15% Similarity=0.147 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHHHHHHHHHHHHHhhCHHHHHH
Q 010474 28 YYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPAVQQK 104 (509)
Q Consensus 28 Y~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~Lv~ekLp~Hpdyk~~~~~~k~~~~~~l~~vl~~lE~LK~~l~~~ 104 (509)
++..|.+++++|--+...||++.||.+|..=+.+|+.-|..-+ .+..|..++.++.+-+.++|.||..|+..
T Consensus 11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~-----~~~~k~~l~~K~~eYl~RAE~LK~~l~~~ 82 (93)
T 1wfd_A 11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTK-----ESSKRCVLRTKISGYMDRAENIKKYLDQE 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5668899999999999999999999999999999987665432 23567789999999999999999998643
No 18
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.019 Score=47.00 Aligned_cols=73 Identities=10% Similarity=0.114 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHHHHHHHHHHHHHhhCHHHHH
Q 010474 26 RYYYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPAVQQ 103 (509)
Q Consensus 26 r~Y~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~Lv~ekLp~Hpdyk~~~~~~k~~~~~~l~~vl~~lE~LK~~l~~ 103 (509)
..++..|..++++|--....||++.|+-+|..=+.+|+.-+..=+ .+..|..++.++.+-+.++|.||..|++
T Consensus 7 ~~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~-----~~~~k~~l~~k~~eYl~RAE~Lk~~l~~ 79 (85)
T 2v6x_A 7 GDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEK-----NPKSKDLIRAKFTEYLNRAEQLKKHLES 79 (85)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 347889999999999999999999999999999999987663211 3456788999999999999999998863
No 19
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=95.89 E-value=0.012 Score=48.47 Aligned_cols=72 Identities=14% Similarity=0.041 Sum_probs=60.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHHHHHHHHHHHHHhhCHH
Q 010474 24 ALRYYYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPA 100 (509)
Q Consensus 24 plr~Y~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~Lv~ekLp~Hpdyk~~~~~~k~~~~~~l~~vl~~lE~LK~~ 100 (509)
|-..++..|.+++++|-.+-+.||++.||.+|..=+.+|+.-|..=||- ..|..++.++.+-+.++|+||..
T Consensus 11 ~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e~d~-----~~k~~ir~K~~eY~~RAE~LK~~ 82 (83)
T 2w2u_A 11 AQVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDG-----STAAIYEQMINEYKRRIEVLKEL 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTS-----STHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556899999999999999999999999999999999887666443322 34677889999999999999864
No 20
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=95.57 E-value=0.018 Score=47.29 Aligned_cols=69 Identities=9% Similarity=0.021 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHHHHHHHHHHHHHhhCHHH
Q 010474 28 YYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPAV 101 (509)
Q Consensus 28 Y~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~Lv~ekLp~Hpdyk~~~~~~k~~~~~~l~~vl~~lE~LK~~l 101 (509)
++..|..++++|--+-+.||++.||.+|..=+.+|+.-|..-|+- ..|..++.++.+-+.++|+||..|
T Consensus 7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~-----~~k~~ir~K~~eY~~RAE~Lk~~l 75 (83)
T 2v6y_A 7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPES-----VARTAYEQMINEYKKRISYLEKVL 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTC-----TTHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 678999999999999999999999999999999987666433322 346788899999999999999866
No 21
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=94.25 E-value=0.008 Score=59.41 Aligned_cols=71 Identities=15% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHHHHHHHHHHHHHhhCHHHHH
Q 010474 28 YYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPAVQQ 103 (509)
Q Consensus 28 Y~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~Lv~ekLp~Hpdyk~~~~~~k~~~~~~l~~vl~~lE~LK~~l~~ 103 (509)
+..+|.+++++|--+.+.||++.|+.+|..=+.+++.-+..-+ .+..|..++.++.+-+.++|+||..|++
T Consensus 19 ~~~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~Ll~alk~e~-----d~~~k~~lr~Ki~eYl~RAE~LK~~L~k 89 (257)
T 2ymb_A 19 QSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTK-----DNTKRCNLREKISKYMDRAENIKKYLDQ 89 (257)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7889999999999999999999999999999999987776433 2345778889999999999999998864
No 22
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=92.69 E-value=0.53 Score=41.47 Aligned_cols=82 Identities=22% Similarity=0.216 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCCCCCcceEEEeeceecCCEEEEEEEEecCCCCCCcccccCChHHHHHHHhhCCCcceEEEcCCCCCCC
Q 010474 341 MMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSLFPLGWIHTHPTQSC 420 (509)
Q Consensus 341 ll~~~l~hA~~nt~~~~EvcGlL~G~~~~~~l~Vt~~~~p~q~~t~~~~~~~de~e~~~~~~~~gl~~vGWyHSHP~~~a 420 (509)
.+.+++...-.. .+.|...+|+=...++.+....++. ||-+.+ ..++.++|..+-..+..-|...|-||++.+
T Consensus 10 ~v~~~l~~~l~~--~~~E~f~vl~Ld~~n~li~~~~l~~----Gt~~~~-~v~pRei~~~Al~~~A~~vIl~HNHPSG~~ 82 (126)
T 2qlc_A 10 DVFEYMKGRIPD--ETKEHLFVLFLSTKNQILRHETITI----GTLTAS-LIHPREIFKAAIRESAHSIILVHNHPSGDV 82 (126)
T ss_dssp HHHHHHTTCCSC--TTSCEEEEEEECTTCBEEEEEEEEE----SSCCGG-GCCHHHHHHHHHHTTCSEEEEEEECSSSCC
T ss_pred HHHHHHHHHhCc--CCCeEEEEEEEcCCCCEEEEEEecC----CCCCcE-eecHHHHHHHHHHcCCcEEEEEecCCCCCC
Confidence 344454443332 3678866654222233333333332 333332 357899999888888889999999999999
Q ss_pred CCCHHHHHh
Q 010474 421 FMSSIDVHT 429 (509)
Q Consensus 421 fpSs~DL~t 429 (509)
.||..|+..
T Consensus 83 ~PS~~D~~~ 91 (126)
T 2qlc_A 83 QPSNADKQV 91 (126)
T ss_dssp SCCHHHHHH
T ss_pred CCCHHHHHH
Confidence 999999864
No 23
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=84.41 E-value=0.19 Score=52.72 Aligned_cols=74 Identities=14% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHHHHHHHHHHHHHhhCHHHHHH
Q 010474 27 YYYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPAVQQK 104 (509)
Q Consensus 27 ~Y~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~Lv~ekLp~Hpdyk~~~~~~k~~~~~~l~~vl~~lE~LK~~l~~~ 104 (509)
.|+..|.+++++|--+.+.||++.||.+|..-+.+++.-|.. .....+.+..++.++.+-+.++|.||..|++.
T Consensus 6 ~~~~~A~~~~~~Av~~D~~g~~~eA~~~Y~~a~~~l~~~~k~----e~~~~~~k~~ir~k~~ey~~Rae~Lk~~l~k~ 79 (444)
T 2zan_A 6 TNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKY----EAQGDKAKQSIRAKCTEYLDRAEKLKEYLKKK 79 (444)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh----hccChHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 478899999999999999999999999999999998766632 11122346678889999999999999998543
No 24
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=42.13 E-value=66 Score=25.79 Aligned_cols=62 Identities=8% Similarity=-0.059 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHHHHHHHHHHHHHhhC
Q 010474 32 ADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQ 98 (509)
Q Consensus 32 a~~llr~A~iy~~egn~e~AYily~Ry~~Lv~ekLp~Hpdyk~~~~~~k~~~~~~l~~vl~~lE~LK 98 (509)
-.+-++.|+-|...||++.|=++|---+..+-..|..-. .+..|..+..-.+++-+|.|..|
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~-----d~~~r~kW~~~~~ei~~E~~~Vk 73 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVK-----DTHLRQKWQQVWQEINVEAKQVK 73 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCS-----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcC-----CHHHHHhHHHHHHHHHHHHHHHH
Confidence 356678999999999999999999988877755555532 33556666554455556665554
No 25
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=31.48 E-value=1.3e+02 Score=23.80 Aligned_cols=32 Identities=9% Similarity=0.093 Sum_probs=23.8
Q ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCccc
Q 010474 37 KQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDY 72 (509)
Q Consensus 37 r~A~iy~~egn~e~AYily~Ry~~Lv~ekLp~Hpdy 72 (509)
.-|..|++-||++.|.-++.+-+.| -|.|+..
T Consensus 51 ~L~~~~~~~g~~~~A~~~~~~al~l----~P~~~~~ 82 (104)
T 2v5f_A 51 YLSYAVYQQGDLDKALLLTKKLLEL----DPEHQRA 82 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhc----CCCCHHH
Confidence 5578889999999999888876554 3666544
No 26
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=28.02 E-value=96 Score=24.16 Aligned_cols=34 Identities=12% Similarity=0.132 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCc
Q 010474 33 DNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHR 70 (509)
Q Consensus 33 ~~llr~A~iy~~egn~e~AYily~Ry~~Lv~ekLp~Hp 70 (509)
..++..|.+|.+.|+++.|--.|.+.+.+. |.++
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~----p~~~ 73 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSRY----PTHD 73 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTST
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHC----CCCc
Confidence 345567888999999999999999988875 6663
No 27
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=26.71 E-value=1e+02 Score=24.97 Aligned_cols=37 Identities=14% Similarity=0.072 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Q 010474 25 LRYYYRIADNILKQADIFREEKNIIDLYVMLLRFSSL 61 (509)
Q Consensus 25 lr~Y~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~L 61 (509)
.....+.+..++..|.+|+..||++.|.-+|.+-+.+
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 42 (166)
T 1a17_A 6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIEL 42 (166)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3557788999999999999999999999999887665
No 28
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=24.98 E-value=1.7e+02 Score=23.77 Aligned_cols=34 Identities=3% Similarity=-0.231 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCccc
Q 010474 35 ILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDY 72 (509)
Q Consensus 35 llr~A~iy~~egn~e~AYily~Ry~~Lv~ekLp~Hpdy 72 (509)
++..|.+|.+.|+++.|--.|-+-+.+- |.++++
T Consensus 55 ~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~ 88 (142)
T 2xcb_A 55 FLGLGACRQSLGLYEQALQSYSYGALMD----INEPRF 88 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCTHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCcHH
Confidence 3445777777777777777777655543 555544
No 29
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=23.88 E-value=2.4e+02 Score=23.24 Aligned_cols=30 Identities=3% Similarity=-0.197 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhcChhhHHHHHHHHHHHH
Q 010474 33 DNILKQADIFREEKNIIDLYVMLLRFSSLV 62 (509)
Q Consensus 33 ~~llr~A~iy~~egn~e~AYily~Ry~~Lv 62 (509)
.-++..|.+|.+.|+++.|--.|-+-+.+-
T Consensus 46 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 75 (164)
T 3sz7_A 46 IYLSNRAAAYSASGQHEKAAEDAELATVVD 75 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 345566788888888888888777766653
No 30
>1wol_A ST0689, 122AA long conserved hypothetical protein; alpha helix, loop, unknown function; 1.62A {Sulfolobus tokodaii}
Probab=23.54 E-value=1.2e+02 Score=25.20 Aligned_cols=31 Identities=10% Similarity=0.029 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhHHHHH
Q 010474 25 LRYYYRIADNILKQADIFREEKNIIDLYVML 55 (509)
Q Consensus 25 lr~Y~Rsa~~llr~A~iy~~egn~e~AYily 55 (509)
.+.|++.|..-++.|...++.|++..|-...
T Consensus 4 ~~~wl~~A~~dL~~A~~~~~~g~y~~a~f~a 34 (122)
T 1wol_A 4 VEDWIKQAERDLEEARYAKSGGYYELACFLS 34 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 3679999999999999999999999877666
No 31
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=22.98 E-value=2.4e+02 Score=22.59 Aligned_cols=27 Identities=7% Similarity=-0.208 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHH
Q 010474 35 ILKQADIFREEKNIIDLYVMLLRFSSL 61 (509)
Q Consensus 35 llr~A~iy~~egn~e~AYily~Ry~~L 61 (509)
++..|.+|...|+++.|.-++.+-+.+
T Consensus 50 ~~~~a~~~~~~~~~~~A~~~~~~a~~~ 76 (166)
T 1a17_A 50 YGNRSLAYLRTECYGYALGDATRAIEL 76 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334455555555555555555544433
No 32
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=22.88 E-value=3.5e+02 Score=22.99 Aligned_cols=47 Identities=11% Similarity=0.019 Sum_probs=38.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccc
Q 010474 23 IALRYYYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYL 73 (509)
Q Consensus 23 iplr~Y~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~Lv~ekLp~Hpdyk 73 (509)
.+...-...+..+...|..|++.|+++.|.-+|.+-+.+. |.++++.
T Consensus 29 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~ 75 (198)
T 2fbn_A 29 YTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF----IHTEEWD 75 (198)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----TTCTTCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----hcccccc
Confidence 3455667788899999999999999999999998876655 6777665
No 33
>2hsb_A Hypothetical UPF0332 protein AF0298; DUF103 family, structural genomics, joint center for structu genomics, JCSG; HET: MSE PG4; 1.95A {Archaeoglobus fulgidus}
Probab=22.27 E-value=1.6e+02 Score=24.30 Aligned_cols=27 Identities=19% Similarity=0.044 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhH
Q 010474 25 LRYYYRIADNILKQADIFREEKNIIDL 51 (509)
Q Consensus 25 lr~Y~Rsa~~llr~A~iy~~egn~e~A 51 (509)
.+.|++-|..-|+.|+..+++|++..|
T Consensus 5 ~~~~l~~A~~~L~~A~~~~~~g~y~~a 31 (126)
T 2hsb_A 5 LELRIRKAEKLVQDAKKEFEMGLYERC 31 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 367999999999999999999999877
No 34
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=22.17 E-value=1.9e+02 Score=30.37 Aligned_cols=43 Identities=12% Similarity=0.006 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccC-CCCcccc
Q 010474 31 IADNILKQADIFREEKNIIDLYVMLLRFSSLVTETI-PCHRDYL 73 (509)
Q Consensus 31 sa~~llr~A~iy~~egn~e~AYily~Ry~~Lv~ekL-p~Hpdyk 73 (509)
+|..+...|.+|..-|+++.|=-+|-|=+.+....| +.||+..
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 435 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITK 435 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHH
Confidence 677888899999999999999999999998887666 4598775
No 35
>1ufb_A TT1696 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.90A {Thermus thermophilus} SCOP: a.24.16.3
Probab=21.34 E-value=1.4e+02 Score=24.96 Aligned_cols=32 Identities=13% Similarity=-0.089 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhHHHHHH
Q 010474 25 LRYYYRIADNILKQADIFREEKNIIDLYVMLL 56 (509)
Q Consensus 25 lr~Y~Rsa~~llr~A~iy~~egn~e~AYily~ 56 (509)
.+.|++.|..-++.|...++.|++..|-....
T Consensus 4 ~~~w~~~A~~~L~~A~~~~~~g~y~~a~f~a~ 35 (127)
T 1ufb_A 4 ARDWLEQARHNLRHAQGSLGLGDYAWACFAAQ 35 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 36799999999999999999999987655443
No 36
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=20.73 E-value=1.7e+02 Score=26.12 Aligned_cols=44 Identities=11% Similarity=-0.176 Sum_probs=37.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCccc
Q 010474 24 ALRYYYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDY 72 (509)
Q Consensus 24 plr~Y~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~Lv~ekLp~Hpdy 72 (509)
||+. ...|..++..+..+++.|+++.|--.|-|=+.+. |.||+-
T Consensus 4 ~~~~-~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~----p~~~~~ 47 (159)
T 2hr2_A 4 PLKE-VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEIS----HTMPPE 47 (159)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH----TTSCTT
T ss_pred cHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----CCCcch
Confidence 5666 6789999999999999999999999999877776 676653
No 37
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=20.28 E-value=1.5e+02 Score=22.57 Aligned_cols=32 Identities=9% Similarity=-0.148 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHHHHHHH
Q 010474 31 IADNILKQADIFREEKNIIDLYVMLLRFSSLV 62 (509)
Q Consensus 31 sa~~llr~A~iy~~egn~e~AYily~Ry~~Lv 62 (509)
.+..++..|.+|...|+++.|.-+|.+-+.+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 34 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD 34 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 46677888999999999999999988877653
Done!