BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010475
(509 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 446 YQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGD 498
+Q+E+ C +C+ ++E +RVLPC+HEFH CVDKWLK +R CP+CR D
Sbjct: 19 HQSEQTL-CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRAD 69
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 59.3 bits (142), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/57 (52%), Positives = 38/57 (66%), Gaps = 3/57 (5%)
Query: 453 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPSEN 509
+C ICL EEG+ VR LPC H FH+ CVD+WL ++ CP+CR DI LPSE+
Sbjct: 16 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLI-TNKKCPICRVDI--EAQLPSES 69
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 58.9 bits (141), Expect = 6e-09, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 427 APNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLK 486
A E +++LP L T+ +E+ C IC EY +GD LPCHH FHK CV WL+
Sbjct: 17 ASKESIDALPEILVTEDHGAVGQEMC-CPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ 75
Query: 487 EIHRVCPLCR 496
+ CP+CR
Sbjct: 76 K-SGTCPVCR 84
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 453 QCYICLLEYEEGDSVRVLP-CHHEFHKTCVDKWLKEIHRVCPLCR 496
+C +CL E E+G+ R LP C H FH CVD WL H CPLCR
Sbjct: 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCR 50
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 453 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCR 496
+C +C +Y G+SVR LPC+H FH +C+ WL++ H CP+CR
Sbjct: 17 ECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCR 59
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 454 CYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLC 495
C +CL +++ D + + PC H FH+ C+ KWL E+ +VCPLC
Sbjct: 18 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWL-EVRKVCPLC 58
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 5/44 (11%)
Query: 453 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCR 496
+C IC+ +G + +LPC H F + C+DKW + HR CP+CR
Sbjct: 17 ECCICM----DGRADLILPCAHSFCQKCIDKW-SDRHRNCPICR 55
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 454 CYICLLEYEEGDSV-RVLPCHHEFHKTCVDKWLKEIHRVCPLCRG 497
C ICL + V VLPC H H+TC ++ LKE +R CPLC G
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYR-CPLCSG 51
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 454 CYICLLEYEEGDSVRVL-PCHHEFHKTCVDKWLKEIHRVCPLCRGD 498
C C E ++ D V V C+H FH C+ W+K+ +R CPLC+ D
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNR-CPLCQQD 73
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 449 EEVAQ--CYICLLEYEEGDSV-RVLPCHHEFHKTCVDKWLKEIHRVCPLC 495
E V+Q C ICL + V VLPC H H+TC ++ LKE +R CPLC
Sbjct: 1 ENVSQQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYR-CPLC 49
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI 499
E QC IC + E + L C H F C+++W+K CP+CR DI
Sbjct: 62 ENELQCIICSEYFIEAVT---LNCAHSFCSYCINEWMKRKIE-CPICRKDI 108
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI 499
E QC IC + E + L C H F C+++W+K CP+CR DI
Sbjct: 51 ENELQCIICSEYFIEAVT---LNCAHSFCSYCINEWMKRKIE-CPICRKDI 97
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 33.9 bits (76), Expect = 0.21, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI 499
E QC IC + E + L C H F C+++W+K CP+CR DI
Sbjct: 51 ENELQCIICSEYFIEAVT---LNCAHSFCSYCINEWMKRKIE-CPICRKDI 97
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 33.1 bits (74), Expect = 0.38, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 465 DSVRVLPCHHEFHKTCVDKWLKEIHRVCPLC 495
D+ ++ C H F KTC+ ++L E + CP+C
Sbjct: 23 DATTIIECLHSFCKTCIVRYL-ETSKYCPIC 52
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 33.1 bits (74), Expect = 0.38, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWL--KEIHRVCPLCRGDICK 501
+++ +C ICL +E S + C H F K C+ K L K+ CPLC+ DI K
Sbjct: 19 QKILECPICLELIKEPVSTK---CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 453 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI 499
+C ICL + + LPC H F C+ +W+++ + CPLC+ +
Sbjct: 7 RCPICL--EDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPV 50
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 32.7 bits (73), Expect = 0.45, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 465 DSVRVLPCHHEFHKTCVDKWLKEIHRVCPLC 495
D+ ++ C H F KTC+ ++L E + CP+C
Sbjct: 27 DATTIIECLHSFCKTCIVRYL-ETSKYCPIC 56
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 32.7 bits (73), Expect = 0.47, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 465 DSVRVLPCHHEFHKTCVDKWLKEIHRVCPLC 495
D+ ++ C H F KTC+ ++L E + CP+C
Sbjct: 27 DATTIIECLHSFCKTCIVRYL-ETSKYCPIC 56
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 32.0 bits (71), Expect = 0.80, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 472 CHHEFHKTCVDKWLKEIHRVCPL 494
C+H FH C+ +WLK +VCPL
Sbjct: 75 CNHAFHFHCISRWLK-TRQVCPL 96
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 32.0 bits (71), Expect = 0.87, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 472 CHHEFHKTCVDKWLKEIHRVCPL 494
C+H FH C+ +WLK +VCPL
Sbjct: 57 CNHAFHFHCISRWLK-TRQVCPL 78
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 32.0 bits (71), Expect = 0.87, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 472 CHHEFHKTCVDKWLKEIHRVCPL 494
C+H FH C+ +WLK +VCPL
Sbjct: 65 CNHAFHFHCISRWLK-TRQVCPL 86
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 32.0 bits (71), Expect = 0.93, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 472 CHHEFHKTCVDKWLKEIHRVCPL 494
C+H FH C+ +WLK +VCPL
Sbjct: 84 CNHAFHFHCISRWLK-TRQVCPL 105
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 32.0 bits (71), Expect = 0.95, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 456 ICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI 499
+C + E V++ PC H +C+ W + + CP CR +I
Sbjct: 28 LCKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 71
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 31.6 bits (70), Expect = 0.99, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 472 CHHEFHKTCVDKWLKEIHRVCPL 494
C+H FH C+ +WLK +VCPL
Sbjct: 73 CNHAFHFHCISRWLK-TRQVCPL 94
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 453 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPL 494
+C ICL+ E PC H F K C+ K +++ CP+
Sbjct: 8 ECPICLMALREAVQT---PCGHRFCKACIIKSIRDAGHKCPV 46
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 472 CHHEFHKTCVDKWLKEIHRVCPL 494
C+H FH C+ +WLK +VCPL
Sbjct: 67 CNHAFHFHCISRWLK-TRQVCPL 88
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPL 494
E +C ICL+ E PC H F K C+ K +++ CP+
Sbjct: 16 ESKYECPICLMALREAVQT---PCGHRFCKACIIKSIRDAGHKCPV 58
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 456 ICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI 499
+C + E V++ PC H +C+ W + + CP CR +I
Sbjct: 29 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 72
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 443 SQKYQNEEV-AQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHR--VCPLC 495
S +N +V A C +CL +E ++ C H F K C+ +W +++ R CP+C
Sbjct: 6 SGALENLQVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 453 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPL 494
+C ICL+ E PC H F K C+ K +++ CP+
Sbjct: 27 ECPICLMALREAVQT---PCGHRFCKACIIKSIRDAGHKCPV 65
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 456 ICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI 499
+C + E V++ PC H +C+ W + + CP CR +I
Sbjct: 26 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 69
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 454 CYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI 499
C IC E V++ PC H +C+ W + + CP CR +I
Sbjct: 337 CKICA---ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 454 CYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI 499
C IC E V++ PC H +C+ W + + CP CR +I
Sbjct: 337 CKICA---ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 454 CYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI 499
C IC E V++ PC H +C+ W + + CP CR +I
Sbjct: 341 CKICA---ENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 383
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 472 CHHEFHKTCVDKWLKEIHRVCPL 494
C+H FH C+ +WLK +VCPL
Sbjct: 73 CNHAFHFHCISRWLK-TRQVCPL 94
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 454 CYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI 499
C IC E V++ PC H +C+ W + + CP CR +I
Sbjct: 335 CKICA---ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 454 CYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI 499
C IC E V++ PC H +C+ W + + CP CR +I
Sbjct: 335 CKICA---ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,809,543
Number of Sequences: 62578
Number of extensions: 381676
Number of successful extensions: 439
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 418
Number of HSP's gapped (non-prelim): 43
length of query: 509
length of database: 14,973,337
effective HSP length: 103
effective length of query: 406
effective length of database: 8,527,803
effective search space: 3462288018
effective search space used: 3462288018
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)