Query 010475
Match_columns 509
No_of_seqs 222 out of 1488
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 00:58:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010475.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010475hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.6 7.3E-16 1.6E-20 158.4 8.1 79 425-505 205-283 (348)
2 PF13639 zf-RING_2: Ring finge 99.4 6.4E-14 1.4E-18 103.3 2.5 43 453-496 2-44 (44)
3 COG5540 RING-finger-containing 99.2 6.4E-12 1.4E-16 127.5 4.3 54 449-502 321-374 (374)
4 PHA02929 N1R/p28-like protein; 99.2 1.4E-11 3E-16 121.7 4.2 72 428-500 151-227 (238)
5 PF12678 zf-rbx1: RING-H2 zinc 99.1 3.9E-11 8.4E-16 98.4 3.9 45 451-496 19-73 (73)
6 COG5243 HRD1 HRD ubiquitin lig 98.9 5.4E-10 1.2E-14 116.2 4.0 66 429-499 269-344 (491)
7 PLN03208 E3 ubiquitin-protein 98.9 6.9E-10 1.5E-14 106.9 3.6 55 449-506 16-85 (193)
8 cd00162 RING RING-finger (Real 98.9 1.4E-09 2.9E-14 76.8 3.8 45 453-499 1-45 (45)
9 KOG0317 Predicted E3 ubiquitin 98.9 2.7E-09 5.8E-14 107.8 6.4 53 449-505 237-289 (293)
10 KOG0823 Predicted E3 ubiquitin 98.9 1.2E-09 2.7E-14 107.3 3.4 55 449-506 45-101 (230)
11 PF13920 zf-C3HC4_3: Zinc fing 98.8 3.3E-09 7.1E-14 80.4 2.8 46 451-500 2-48 (50)
12 smart00504 Ubox Modified RING 98.7 9E-09 2E-13 79.7 4.3 52 452-507 2-53 (63)
13 PF12861 zf-Apc11: Anaphase-pr 98.7 7.7E-09 1.7E-13 88.4 3.9 51 450-500 20-82 (85)
14 KOG0320 Predicted E3 ubiquitin 98.7 6.4E-09 1.4E-13 99.3 3.2 56 448-505 128-183 (187)
15 PF13923 zf-C3HC4_2: Zinc fing 98.7 7E-09 1.5E-13 75.1 2.7 39 454-495 1-39 (39)
16 KOG0802 E3 ubiquitin ligase [P 98.7 8.4E-09 1.8E-13 111.5 2.7 53 449-502 289-343 (543)
17 smart00184 RING Ring finger. E 98.6 3.1E-08 6.7E-13 67.5 3.5 39 454-495 1-39 (39)
18 PF15227 zf-C3HC4_4: zinc fing 98.6 2.5E-08 5.5E-13 74.3 2.7 39 454-495 1-42 (42)
19 PHA02926 zinc finger-like prot 98.6 1.6E-08 3.5E-13 99.6 1.8 53 448-500 167-230 (242)
20 PF00097 zf-C3HC4: Zinc finger 98.5 3.4E-08 7.3E-13 71.4 2.0 40 454-495 1-41 (41)
21 PF14634 zf-RING_5: zinc-RING 98.5 8.7E-08 1.9E-12 71.3 3.0 44 453-497 1-44 (44)
22 TIGR00599 rad18 DNA repair pro 98.4 1.1E-07 2.3E-12 100.4 3.6 54 449-506 24-77 (397)
23 PF04564 U-box: U-box domain; 98.3 2.4E-07 5.1E-12 75.8 1.6 55 450-507 3-57 (73)
24 COG5574 PEX10 RING-finger-cont 98.3 4.3E-07 9.3E-12 91.2 2.7 53 449-504 213-266 (271)
25 COG5194 APC11 Component of SCF 98.2 7.6E-07 1.6E-11 75.9 3.3 50 452-502 21-83 (88)
26 PF13445 zf-RING_UBOX: RING-ty 98.2 7.1E-07 1.5E-11 67.4 2.7 39 454-493 1-43 (43)
27 KOG2164 Predicted E3 ubiquitin 98.2 5.4E-07 1.2E-11 97.0 2.8 53 451-506 186-242 (513)
28 KOG2177 Predicted E3 ubiquitin 98.2 6.9E-07 1.5E-11 81.8 1.4 45 449-497 11-55 (386)
29 KOG2930 SCF ubiquitin ligase, 98.1 1E-06 2.3E-11 78.2 2.4 65 433-498 27-106 (114)
30 KOG1493 Anaphase-promoting com 98.1 8.4E-07 1.8E-11 75.1 0.9 51 450-500 19-81 (84)
31 KOG0828 Predicted E3 ubiquitin 98.1 1.5E-06 3.2E-11 93.5 2.0 51 451-501 571-635 (636)
32 smart00744 RINGv The RING-vari 98.0 5.8E-06 1.2E-10 63.7 3.4 43 453-496 1-49 (49)
33 TIGR00570 cdk7 CDK-activating 98.0 5.2E-06 1.1E-10 85.4 4.1 53 451-503 3-57 (309)
34 COG5219 Uncharacterized conser 98.0 1.7E-06 3.8E-11 98.2 0.6 52 449-500 1467-1523(1525)
35 KOG0287 Postreplication repair 97.9 3.2E-06 6.9E-11 87.8 1.4 51 450-504 22-72 (442)
36 PF11793 FANCL_C: FANCL C-term 97.8 4.7E-06 1E-10 68.3 0.6 49 452-500 3-66 (70)
37 COG5432 RAD18 RING-finger-cont 97.7 1.2E-05 2.7E-10 82.3 1.9 50 450-503 24-73 (391)
38 KOG1734 Predicted RING-contain 97.7 8.7E-06 1.9E-10 82.5 -0.0 56 450-505 223-286 (328)
39 KOG0824 Predicted E3 ubiquitin 97.6 2.7E-05 5.9E-10 79.9 2.0 49 451-502 7-55 (324)
40 KOG0827 Predicted E3 ubiquitin 97.6 3.4E-05 7.3E-10 81.4 2.4 50 451-500 4-56 (465)
41 KOG0804 Cytoplasmic Zn-finger 97.5 3.6E-05 7.8E-10 82.3 1.5 49 449-500 173-222 (493)
42 KOG4265 Predicted E3 ubiquitin 97.5 8.7E-05 1.9E-09 77.4 3.7 49 449-501 288-337 (349)
43 KOG1645 RING-finger-containing 97.5 4.9E-05 1.1E-09 80.6 1.9 52 451-502 4-58 (463)
44 KOG4445 Uncharacterized conser 97.4 5.9E-05 1.3E-09 77.6 1.0 50 452-501 116-187 (368)
45 KOG0825 PHD Zn-finger protein 97.3 3.9E-05 8.4E-10 86.4 -0.5 52 451-503 123-174 (1134)
46 KOG0311 Predicted E3 ubiquitin 97.3 3.6E-05 7.8E-10 80.4 -1.3 54 450-505 42-95 (381)
47 KOG0978 E3 ubiquitin ligase in 97.2 9.7E-05 2.1E-09 82.8 0.9 52 451-505 643-694 (698)
48 KOG1039 Predicted E3 ubiquitin 97.1 0.00024 5.1E-09 74.3 2.0 50 450-499 160-220 (344)
49 KOG4172 Predicted E3 ubiquitin 97.0 0.00015 3.2E-09 58.4 -0.3 46 452-500 8-54 (62)
50 PF14835 zf-RING_6: zf-RING of 96.9 0.00025 5.4E-09 58.4 -0.0 50 451-505 7-56 (65)
51 KOG4159 Predicted E3 ubiquitin 96.9 0.00052 1.1E-08 73.0 2.2 49 449-501 82-130 (398)
52 KOG0297 TNF receptor-associate 96.7 0.00084 1.8E-08 70.9 2.1 55 449-506 19-73 (391)
53 KOG0801 Predicted E3 ubiquitin 96.4 0.0011 2.3E-08 63.7 0.9 30 449-478 175-204 (205)
54 PF11789 zf-Nse: Zinc-finger o 96.3 0.0016 3.5E-08 51.9 1.1 42 451-494 11-53 (57)
55 KOG1428 Inhibitor of type V ad 96.2 0.0032 7E-08 75.0 3.3 52 449-500 3484-3544(3738)
56 KOG1941 Acetylcholine receptor 96.2 0.0019 4.1E-08 68.8 1.1 49 451-499 365-415 (518)
57 KOG1785 Tyrosine kinase negati 96.1 0.0022 4.7E-08 68.5 1.1 49 451-502 369-418 (563)
58 PF05883 Baculo_RING: Baculovi 96.0 0.0026 5.7E-08 58.9 1.3 36 451-486 26-67 (134)
59 KOG1002 Nucleotide excision re 95.8 0.0067 1.5E-07 66.8 3.5 56 449-507 534-593 (791)
60 PF04641 Rtf2: Rtf2 RING-finge 95.8 0.015 3.3E-07 58.1 5.7 55 449-505 111-166 (260)
61 KOG0826 Predicted E3 ubiquitin 95.8 0.025 5.5E-07 59.2 7.2 46 449-498 298-344 (357)
62 KOG2879 Predicted E3 ubiquitin 95.8 0.0082 1.8E-07 61.5 3.6 50 449-500 237-287 (298)
63 PF10367 Vps39_2: Vacuolar sor 95.6 0.0048 1E-07 51.9 1.0 33 449-482 76-108 (109)
64 PF12906 RINGv: RING-variant d 95.5 0.0093 2E-07 45.7 2.2 41 454-495 1-47 (47)
65 KOG3970 Predicted E3 ubiquitin 95.4 0.016 3.4E-07 58.4 3.8 53 451-504 50-109 (299)
66 KOG2660 Locus-specific chromos 95.3 0.0064 1.4E-07 63.4 0.9 54 450-506 14-67 (331)
67 PHA02862 5L protein; Provision 95.2 0.014 3E-07 55.1 2.7 47 452-502 3-55 (156)
68 PF14570 zf-RING_4: RING/Ubox 95.1 0.0082 1.8E-07 46.9 0.9 45 454-499 1-47 (48)
69 KOG3039 Uncharacterized conser 95.1 0.026 5.7E-07 57.4 4.6 56 450-506 220-276 (303)
70 COG5222 Uncharacterized conser 95.1 0.016 3.5E-07 60.3 3.1 53 452-507 275-329 (427)
71 KOG4692 Predicted E3 ubiquitin 94.8 0.017 3.6E-07 61.2 2.3 65 432-500 402-467 (489)
72 KOG1571 Predicted E3 ubiquitin 94.7 0.021 4.5E-07 60.2 2.9 45 449-500 303-347 (355)
73 KOG1952 Transcription factor N 94.6 0.022 4.9E-07 65.4 3.1 48 449-496 189-243 (950)
74 KOG4185 Predicted E3 ubiquitin 94.6 0.02 4.3E-07 57.3 2.4 48 452-499 4-54 (296)
75 COG5152 Uncharacterized conser 94.3 0.016 3.4E-07 57.5 0.7 44 452-499 197-240 (259)
76 PHA02825 LAP/PHD finger-like p 94.2 0.034 7.3E-07 53.2 2.8 50 449-502 6-61 (162)
77 PHA03096 p28-like protein; Pro 93.9 0.03 6.6E-07 57.4 1.9 45 452-496 179-230 (284)
78 COG5236 Uncharacterized conser 93.5 0.077 1.7E-06 56.3 4.1 65 430-498 41-106 (493)
79 KOG0827 Predicted E3 ubiquitin 93.5 0.0055 1.2E-07 65.3 -4.3 49 452-501 197-246 (465)
80 KOG1940 Zn-finger protein [Gen 93.5 0.029 6.3E-07 57.5 0.9 47 453-501 160-207 (276)
81 KOG1814 Predicted E3 ubiquitin 93.4 0.067 1.5E-06 57.5 3.5 37 450-486 183-219 (445)
82 KOG1813 Predicted E3 ubiquitin 93.0 0.032 7E-07 57.8 0.4 44 452-499 242-285 (313)
83 KOG4275 Predicted E3 ubiquitin 92.4 0.028 6.1E-07 58.3 -0.9 42 451-500 300-342 (350)
84 COG5175 MOT2 Transcriptional r 92.0 0.097 2.1E-06 55.5 2.4 53 451-503 14-67 (480)
85 KOG1001 Helicase-like transcri 91.9 0.039 8.5E-07 62.5 -0.6 49 452-504 455-504 (674)
86 KOG2114 Vacuolar assembly/sort 90.9 0.12 2.5E-06 59.8 1.8 42 452-499 841-882 (933)
87 PF07800 DUF1644: Protein of u 90.3 0.29 6.2E-06 47.0 3.5 33 451-486 2-47 (162)
88 KOG2817 Predicted E3 ubiquitin 89.8 0.76 1.6E-05 49.4 6.6 50 449-498 332-383 (394)
89 KOG3268 Predicted E3 ubiquitin 88.1 0.37 7.9E-06 47.4 2.6 34 469-502 187-230 (234)
90 KOG3053 Uncharacterized conser 88.0 0.26 5.7E-06 50.5 1.7 52 449-500 18-82 (293)
91 PF08746 zf-RING-like: RING-li 87.8 0.18 4E-06 38.1 0.3 42 454-495 1-43 (43)
92 PF14446 Prok-RING_1: Prokaryo 87.5 0.54 1.2E-05 37.8 2.8 43 451-498 5-50 (54)
93 PF14447 Prok-RING_4: Prokaryo 87.4 0.36 7.8E-06 39.0 1.8 46 452-503 8-53 (55)
94 KOG3161 Predicted E3 ubiquitin 87.0 0.17 3.7E-06 57.2 -0.3 46 449-498 9-55 (861)
95 PF10272 Tmpp129: Putative tra 86.6 0.45 9.7E-06 50.6 2.5 32 472-503 311-354 (358)
96 KOG2932 E3 ubiquitin ligase in 86.4 0.31 6.8E-06 51.2 1.2 43 453-500 92-134 (389)
97 KOG1609 Protein involved in mR 84.1 0.65 1.4E-05 46.0 2.2 51 451-501 78-135 (323)
98 KOG0825 PHD Zn-finger protein 83.7 0.59 1.3E-05 54.1 1.9 49 451-499 96-153 (1134)
99 KOG0298 DEAD box-containing he 82.0 0.48 1E-05 57.1 0.3 43 452-497 1154-1196(1394)
100 KOG2034 Vacuolar sorting prote 81.9 0.68 1.5E-05 54.0 1.5 35 450-485 816-850 (911)
101 COG5183 SSM4 Protein involved 81.4 1 2.2E-05 52.4 2.6 56 448-504 9-70 (1175)
102 KOG3002 Zn finger protein [Gen 79.3 1.3 2.7E-05 46.1 2.3 45 449-501 46-92 (299)
103 KOG1100 Predicted E3 ubiquitin 79.0 2.2 4.8E-05 42.1 3.7 39 454-500 161-200 (207)
104 KOG1812 Predicted E3 ubiquitin 77.3 0.99 2.1E-05 48.1 0.9 37 450-486 145-182 (384)
105 PF05290 Baculo_IE-1: Baculovi 77.2 2 4.3E-05 40.5 2.7 53 450-502 79-134 (140)
106 KOG4362 Transcriptional regula 75.0 0.76 1.7E-05 52.5 -0.7 47 452-501 22-70 (684)
107 smart00249 PHD PHD zinc finger 74.2 0.88 1.9E-05 32.2 -0.3 31 453-483 1-31 (47)
108 KOG3899 Uncharacterized conser 74.0 1.6 3.4E-05 45.9 1.3 32 472-503 325-368 (381)
109 COG5220 TFB3 Cdk activating ki 74.0 1.8 3.9E-05 44.5 1.6 47 451-497 10-61 (314)
110 KOG0309 Conserved WD40 repeat- 72.9 2.2 4.8E-05 49.5 2.2 39 454-494 1031-1069(1081)
111 KOG0802 E3 ubiquitin ligase [P 72.9 2.2 4.8E-05 47.1 2.2 47 451-505 479-525 (543)
112 KOG3005 GIY-YIG type nuclease 68.6 2.5 5.5E-05 43.7 1.4 47 452-498 183-241 (276)
113 KOG0269 WD40 repeat-containing 68.4 9.5 0.00021 44.4 5.9 41 452-494 780-820 (839)
114 KOG1815 Predicted E3 ubiquitin 66.3 3.3 7.2E-05 44.6 1.8 37 449-487 68-104 (444)
115 KOG2807 RNA polymerase II tran 66.3 5.5 0.00012 42.5 3.3 47 450-497 329-375 (378)
116 KOG4718 Non-SMC (structural ma 65.5 2.9 6.3E-05 42.1 1.1 43 451-496 181-223 (235)
117 KOG1829 Uncharacterized conser 61.8 3 6.4E-05 47.1 0.4 41 451-495 511-556 (580)
118 PF03854 zf-P11: P-11 zinc fin 56.3 3.8 8.3E-05 32.6 0.1 33 469-502 15-48 (50)
119 PF02891 zf-MIZ: MIZ/SP-RING z 52.9 12 0.00026 29.1 2.3 44 452-498 3-50 (50)
120 KOG1812 Predicted E3 ubiquitin 49.4 7.7 0.00017 41.5 1.0 44 451-495 306-351 (384)
121 PF13901 DUF4206: Domain of un 47.2 12 0.00026 36.5 2.0 39 452-496 153-196 (202)
122 COG5109 Uncharacterized conser 47.1 18 0.0004 38.6 3.3 46 450-495 335-382 (396)
123 PF00628 PHD: PHD-finger; Int 45.1 8.3 0.00018 28.9 0.4 44 454-497 2-50 (51)
124 KOG3113 Uncharacterized conser 45.1 18 0.00038 37.6 2.8 53 451-506 111-164 (293)
125 KOG3800 Predicted E3 ubiquitin 44.5 14 0.0003 38.8 2.0 35 467-501 18-52 (300)
126 KOG1729 FYVE finger containing 44.2 4.6 9.9E-05 42.0 -1.5 42 452-493 215-256 (288)
127 KOG2066 Vacuolar assembly/sort 43.7 10 0.00022 44.4 0.9 43 452-496 785-831 (846)
128 PF14569 zf-UDP: Zinc-binding 43.2 21 0.00045 31.1 2.5 52 450-501 8-63 (80)
129 KOG0956 PHD finger protein AF1 41.6 9.3 0.0002 44.2 0.2 51 452-502 118-184 (900)
130 TIGR00622 ssl1 transcription f 41.2 27 0.00058 32.0 3.0 44 452-496 56-110 (112)
131 PLN02189 cellulose synthase 40.5 28 0.0006 42.1 3.8 51 450-500 33-87 (1040)
132 KOG4739 Uncharacterized protei 38.5 17 0.00037 37.0 1.5 39 453-492 5-43 (233)
133 KOG4185 Predicted E3 ubiquitin 37.4 6.5 0.00014 39.5 -1.6 47 452-498 208-265 (296)
134 KOG2068 MOT2 transcription fac 37.3 22 0.00048 37.8 2.1 48 452-501 250-299 (327)
135 PF04710 Pellino: Pellino; In 37.1 11 0.00024 41.0 0.0 46 453-498 279-337 (416)
136 PF07975 C1_4: TFIIH C1-like d 35.1 26 0.00057 27.9 1.8 42 454-496 2-50 (51)
137 KOG3039 Uncharacterized conser 34.7 27 0.00059 36.3 2.2 33 451-486 43-75 (303)
138 PLN02436 cellulose synthase A 32.5 44 0.00095 40.7 3.8 50 451-500 36-89 (1094)
139 smart00132 LIM Zinc-binding do 32.0 44 0.00096 22.7 2.4 36 454-499 2-37 (39)
140 PLN02915 cellulose synthase A 31.4 47 0.001 40.3 3.8 51 450-500 14-68 (1044)
141 PF06906 DUF1272: Protein of u 29.3 64 0.0014 26.6 3.1 45 453-501 7-53 (57)
142 PLN02195 cellulose synthase A 29.1 65 0.0014 38.9 4.4 51 451-501 6-60 (977)
143 PF06844 DUF1244: Protein of u 27.7 36 0.00077 28.9 1.4 13 475-487 11-23 (68)
144 PF01363 FYVE: FYVE zinc finge 26.6 28 0.00061 27.7 0.6 36 450-485 8-44 (69)
145 PLN02638 cellulose synthase A 26.3 68 0.0015 39.1 3.9 51 450-500 16-70 (1079)
146 PF07191 zinc-ribbons_6: zinc- 26.3 5.3 0.00011 33.8 -3.7 39 452-499 2-40 (70)
147 PF10571 UPF0547: Uncharacteri 26.1 29 0.00063 24.0 0.6 22 453-476 2-24 (26)
148 KOG3842 Adaptor protein Pellin 25.7 27 0.00058 37.5 0.5 31 465-498 315-350 (429)
149 KOG1815 Predicted E3 ubiquitin 22.9 25 0.00053 38.1 -0.4 37 451-487 226-267 (444)
150 PF13717 zinc_ribbon_4: zinc-r 22.7 38 0.00082 24.8 0.6 25 453-477 4-36 (36)
151 KOG3842 Adaptor protein Pellin 22.6 74 0.0016 34.3 3.0 51 451-501 341-415 (429)
152 PLN02400 cellulose synthase 22.2 72 0.0016 39.0 3.1 51 450-500 35-89 (1085)
153 PF13719 zinc_ribbon_5: zinc-r 22.1 47 0.001 24.3 1.0 25 453-477 4-36 (37)
154 KOG3579 Predicted E3 ubiquitin 21.7 54 0.0012 34.8 1.8 36 451-487 268-305 (352)
155 PF13832 zf-HC5HC2H_2: PHD-zin 20.6 69 0.0015 27.6 2.0 31 451-483 55-87 (110)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=7.3e-16 Score=158.41 Aligned_cols=79 Identities=37% Similarity=0.872 Sum_probs=67.8
Q ss_pred CCCChHHHhcCCceeeecccccccCCccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCC
Q 010475 425 IPAPNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDS 504 (509)
Q Consensus 425 ~PApkevIkSLP~~~~skssk~~~ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds 504 (509)
....+..++.+|...|+........ ..|+||||+|++||+++.|||+|.||..||++||.+.+..||+||.++.....
T Consensus 205 ~r~~k~~l~~~p~~~f~~~~~~~~~--~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~ 282 (348)
T KOG4628|consen 205 NRLIKRLLKKLPVRTFTKGDDEDAT--DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSG 282 (348)
T ss_pred hhhHHHHHhhCCcEEeccccccCCC--ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCCC
Confidence 4567899999999999987665433 58999999999999999999999999999999999755669999998876554
Q ss_pred C
Q 010475 505 L 505 (509)
Q Consensus 505 ~ 505 (509)
.
T Consensus 283 ~ 283 (348)
T KOG4628|consen 283 S 283 (348)
T ss_pred C
Confidence 4
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.42 E-value=6.4e-14 Score=103.33 Aligned_cols=43 Identities=51% Similarity=1.313 Sum_probs=40.0
Q ss_pred ccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcc
Q 010475 453 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCR 496 (509)
Q Consensus 453 eCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCR 496 (509)
+|+||+++|..++.+..|+|+|.||.+||.+||+. +.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 69999999999999999999999999999999997 78999997
No 3
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=6.4e-12 Score=127.52 Aligned_cols=54 Identities=44% Similarity=1.028 Sum_probs=48.5
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKP 502 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ 502 (509)
....+|+|||+.|..+|++++|||.|.||..||++|+...+..||+||.+|+++
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPPp 374 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPPP 374 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCCC
Confidence 344689999999999999999999999999999999986578899999998763
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.18 E-value=1.4e-11 Score=121.74 Aligned_cols=72 Identities=25% Similarity=0.600 Sum_probs=53.7
Q ss_pred ChHHHhcCCceeeecccccccCCccccceecccccCCCc-----eEEeCCCCccchHHHHHHHhhcCCCCCCcccCcC
Q 010475 428 PNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDS-----VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC 500 (509)
Q Consensus 428 pkevIkSLP~~~~skssk~~~ee~eeCpICLEeFeegD~-----VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~ 500 (509)
.+..++.+|.....-........+.+|+||++.+..+.. ...++|+|.||..||.+|++. +.+||+||..+.
T Consensus 151 ~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 151 YKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred hHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 567788888776543333233445789999999876431 234469999999999999985 889999999875
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.12 E-value=3.9e-11 Score=98.44 Aligned_cols=45 Identities=40% Similarity=0.916 Sum_probs=36.0
Q ss_pred ccccceecccccCC----------CceEEeCCCCccchHHHHHHHhhcCCCCCCcc
Q 010475 451 VAQCYICLLEYEEG----------DSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCR 496 (509)
Q Consensus 451 ~eeCpICLEeFeeg----------D~VrvLPCgHvFH~eCIdkWLke~~~TCPLCR 496 (509)
++.|+||++.|... -.+...+|+|.||..||.+||+. +.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 44699999999322 23667789999999999999986 77999998
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=5.4e-10 Score=116.17 Aligned_cols=66 Identities=26% Similarity=0.722 Sum_probs=49.0
Q ss_pred hHHHhcCCceeeecccccccCCccccceeccc-ccCCC---------ceEEeCCCCccchHHHHHHHhhcCCCCCCcccC
Q 010475 429 NEVVESLPVKLYTKSQKYQNEEVAQCYICLLE-YEEGD---------SVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGD 498 (509)
Q Consensus 429 kevIkSLP~~~~skssk~~~ee~eeCpICLEe-FeegD---------~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~ 498 (509)
++.-+-+|....++. ..++..|.|||++ |+.+. +.+.|||||+||.+|++.|+++ +.+||+||.+
T Consensus 269 kdl~~~~~t~t~eql----~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p 343 (491)
T COG5243 269 KDLNAMYPTATEEQL----TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRP 343 (491)
T ss_pred hHHHhhcchhhhhhh----cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCc
Confidence 344444454444332 3455689999999 44442 3588999999999999999996 8899999999
Q ss_pred c
Q 010475 499 I 499 (509)
Q Consensus 499 V 499 (509)
+
T Consensus 344 ~ 344 (491)
T COG5243 344 V 344 (491)
T ss_pred c
Confidence 5
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.91 E-value=6.9e-10 Score=106.91 Aligned_cols=55 Identities=29% Similarity=0.667 Sum_probs=44.7
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhh---------------cCCCCCCcccCcCCCCCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE---------------IHRVCPLCRGDICKPDSLP 506 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke---------------~~~TCPLCRa~V~e~ds~P 506 (509)
.+..+|+||++.+.++ ++++|+|.||..||.+|+.. ....||+||.+|...+.+|
T Consensus 16 ~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvP 85 (193)
T PLN03208 16 GGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVP 85 (193)
T ss_pred CCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEE
Confidence 3457899999998764 67889999999999999852 1357999999998766655
No 8
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.90 E-value=1.4e-09 Score=76.83 Aligned_cols=45 Identities=51% Similarity=1.183 Sum_probs=37.0
Q ss_pred ccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCc
Q 010475 453 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI 499 (509)
Q Consensus 453 eCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V 499 (509)
+|+||++.+. +.+..++|+|.||..|+..|++.....||+|+..+
T Consensus 1 ~C~iC~~~~~--~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999983 33555669999999999999986467899999764
No 9
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2.7e-09 Score=107.80 Aligned_cols=53 Identities=30% Similarity=0.739 Sum_probs=45.5
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSL 505 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~ 505 (509)
+...+|.|||+....+ ..+||||+||..||..|+.+ +..||+||..+.+.+.+
T Consensus 237 ~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKVI 289 (293)
T ss_pred CCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCccee
Confidence 4456899999998765 88999999999999999997 88899999988766543
No 10
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.2e-09 Score=107.30 Aligned_cols=55 Identities=27% Similarity=0.666 Sum_probs=45.4
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhh--cCCCCCCcccCcCCCCCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE--IHRVCPLCRGDICKPDSLP 506 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke--~~~TCPLCRa~V~e~ds~P 506 (509)
....+|.|||+.-+++ ++..|||+||+.||.+||+. ....||+||..|.....+|
T Consensus 45 ~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvP 101 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVP 101 (230)
T ss_pred CCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEe
Confidence 3456899999987664 67779999999999999984 2456899999998887776
No 11
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.79 E-value=3.3e-09 Score=80.37 Aligned_cols=46 Identities=37% Similarity=0.873 Sum_probs=38.8
Q ss_pred ccccceecccccCCCceEEeCCCCc-cchHHHHHHHhhcCCCCCCcccCcC
Q 010475 451 VAQCYICLLEYEEGDSVRVLPCHHE-FHKTCVDKWLKEIHRVCPLCRGDIC 500 (509)
Q Consensus 451 ~eeCpICLEeFeegD~VrvLPCgHv-FH~eCIdkWLke~~~TCPLCRa~V~ 500 (509)
+..|.||++.+.. +..+||+|. ||..|+.+|++. ...||+||++|.
T Consensus 2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence 3579999998654 788999999 999999999995 889999999885
No 12
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.75 E-value=9e-09 Score=79.73 Aligned_cols=52 Identities=23% Similarity=0.517 Sum_probs=46.0
Q ss_pred cccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCCCC
Q 010475 452 AQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS 507 (509)
Q Consensus 452 eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~P~ 507 (509)
..|+||++.+..+ +.++|||+|+..||.+|+++ +.+||+|+..+...+..|+
T Consensus 2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~ 53 (63)
T smart00504 2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPN 53 (63)
T ss_pred cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeC
Confidence 3699999999875 67899999999999999997 8899999999987777765
No 13
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.74 E-value=7.7e-09 Score=88.43 Aligned_cols=51 Identities=33% Similarity=0.785 Sum_probs=40.5
Q ss_pred Cccccceeccccc--------CCCc--eEEeCCCCccchHHHHHHHhh--cCCCCCCcccCcC
Q 010475 450 EVAQCYICLLEYE--------EGDS--VRVLPCHHEFHKTCVDKWLKE--IHRVCPLCRGDIC 500 (509)
Q Consensus 450 e~eeCpICLEeFe--------egD~--VrvLPCgHvFH~eCIdkWLke--~~~TCPLCRa~V~ 500 (509)
+++.|.||...|+ +|+. ++...|+|.||.+||.+||.+ .+..||+||++..
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 3668999999996 3332 455569999999999999984 3578999999764
No 14
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=6.4e-09 Score=99.29 Aligned_cols=56 Identities=30% Similarity=0.552 Sum_probs=45.9
Q ss_pred cCCccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCC
Q 010475 448 NEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSL 505 (509)
Q Consensus 448 ~ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~ 505 (509)
.+..+.|+|||+.|.+... ....|||+||..||+.-|+. ...||+|+..|..+..+
T Consensus 128 ~~~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~ 183 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFH 183 (187)
T ss_pred cccccCCCceecchhhccc-cccccchhHHHHHHHHHHHh-CCCCCCcccccchhhhe
Confidence 3455789999999987522 34679999999999999996 78899999998877654
No 15
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.72 E-value=7e-09 Score=75.09 Aligned_cols=39 Identities=46% Similarity=1.103 Sum_probs=33.5
Q ss_pred cceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCc
Q 010475 454 CYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLC 495 (509)
Q Consensus 454 CpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLC 495 (509)
|+||++.+.. .++.++|||.||..||.+|++. +..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 8999999877 4578999999999999999997 8899998
No 16
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=8.4e-09 Score=111.47 Aligned_cols=53 Identities=34% Similarity=0.847 Sum_probs=45.7
Q ss_pred CCccccceecccccCCCc--eEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCC
Q 010475 449 EEVAQCYICLLEYEEGDS--VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKP 502 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~--VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ 502 (509)
.....|+||++++..+++ +..|||+|+||..|+..|++. ..+||+||..+...
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~~~~ 343 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVLYDY 343 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhhhcc
Confidence 345689999999998766 789999999999999999996 89999999955443
No 17
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.62 E-value=3.1e-08 Score=67.48 Aligned_cols=39 Identities=49% Similarity=1.163 Sum_probs=33.4
Q ss_pred cceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCc
Q 010475 454 CYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLC 495 (509)
Q Consensus 454 CpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLC 495 (509)
|+||++.. ..+..++|+|.||..|+..|++.....||+|
T Consensus 1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 88999983 3468899999999999999998446789998
No 18
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.60 E-value=2.5e-08 Score=74.28 Aligned_cols=39 Identities=38% Similarity=0.924 Sum_probs=30.5
Q ss_pred cceecccccCCCceEEeCCCCccchHHHHHHHhhcC---CCCCCc
Q 010475 454 CYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIH---RVCPLC 495 (509)
Q Consensus 454 CpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~---~TCPLC 495 (509)
|+||++-|.++ +.|+|||.|+..||..|.++.+ ..||+|
T Consensus 1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999885 8899999999999999998533 369998
No 19
>PHA02926 zinc finger-like protein; Provisional
Probab=98.59 E-value=1.6e-08 Score=99.63 Aligned_cols=53 Identities=26% Similarity=0.613 Sum_probs=39.0
Q ss_pred cCCccccceecccccCCC-----ceEEe-CCCCccchHHHHHHHhhc-----CCCCCCcccCcC
Q 010475 448 NEEVAQCYICLLEYEEGD-----SVRVL-PCHHEFHKTCVDKWLKEI-----HRVCPLCRGDIC 500 (509)
Q Consensus 448 ~ee~eeCpICLEeFeegD-----~VrvL-PCgHvFH~eCIdkWLke~-----~~TCPLCRa~V~ 500 (509)
...+.+|+|||+...++. .-..| +|+|.||..||.+|.+.. ...||+||..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 345678999999864321 12344 599999999999999842 245999998764
No 20
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.54 E-value=3.4e-08 Score=71.36 Aligned_cols=40 Identities=48% Similarity=1.128 Sum_probs=34.6
Q ss_pred cceecccccCCCceEEeCCCCccchHHHHHHHh-hcCCCCCCc
Q 010475 454 CYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLK-EIHRVCPLC 495 (509)
Q Consensus 454 CpICLEeFeegD~VrvLPCgHvFH~eCIdkWLk-e~~~TCPLC 495 (509)
|+||++.+..+ +..++|+|.||..||.+|++ .....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998775 35889999999999999999 446779998
No 21
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.49 E-value=8.7e-08 Score=71.31 Aligned_cols=44 Identities=34% Similarity=0.801 Sum_probs=38.0
Q ss_pred ccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCccc
Q 010475 453 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRG 497 (509)
Q Consensus 453 eCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa 497 (509)
.|+||++.|.+......++|+|+||..||.++.. ....||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~-~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKG-KSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcC-CCCCCcCCCC
Confidence 4999999996556688999999999999999994 3678999984
No 22
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.45 E-value=1.1e-07 Score=100.40 Aligned_cols=54 Identities=24% Similarity=0.591 Sum_probs=44.6
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP 506 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~P 506 (509)
.....|+||++.|..+ +.++|+|.||..||..||.. ...||+|+..+......+
T Consensus 24 e~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~ 77 (397)
T TIGR00599 24 DTSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRS 77 (397)
T ss_pred ccccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCcc
Confidence 3456899999999765 57899999999999999986 678999999887654433
No 23
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.30 E-value=2.4e-07 Score=75.78 Aligned_cols=55 Identities=20% Similarity=0.481 Sum_probs=43.3
Q ss_pred CccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCCCC
Q 010475 450 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS 507 (509)
Q Consensus 450 e~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~P~ 507 (509)
+...|+||.+-|.++ +++||||.|...||.+||++.+.+||+|+..+...+..|+
T Consensus 3 ~~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn 57 (73)
T PF04564_consen 3 DEFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPN 57 (73)
T ss_dssp GGGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-
T ss_pred cccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceEC
Confidence 346799999999885 8899999999999999999767899999999988877775
No 24
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=4.3e-07 Score=91.24 Aligned_cols=53 Identities=32% Similarity=0.709 Sum_probs=43.5
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHH-HHhhcCCCCCCcccCcCCCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDK-WLKEIHRVCPLCRGDICKPDS 504 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdk-WLke~~~TCPLCRa~V~e~ds 504 (509)
..+..|+||++..+.. ..+||||+||..||-. |-++.-..||+||+.+..++.
T Consensus 213 ~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 213 LADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 3467899999987764 8899999999999999 988633459999998876654
No 25
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.24 E-value=7.6e-07 Score=75.92 Aligned_cols=50 Identities=36% Similarity=0.727 Sum_probs=38.7
Q ss_pred cccceecccc-----------cCCCc--eEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCC
Q 010475 452 AQCYICLLEY-----------EEGDS--VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKP 502 (509)
Q Consensus 452 eeCpICLEeF-----------eegD~--VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ 502 (509)
+.|+||...| ..+++ ++.--|.|.||.+||.+||.. +..||+||++....
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~~~ 83 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWVLA 83 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeEEe
Confidence 4677777665 34443 555569999999999999997 89999999976443
No 26
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.23 E-value=7.1e-07 Score=67.39 Aligned_cols=39 Identities=38% Similarity=0.796 Sum_probs=23.2
Q ss_pred cceecccccCCC-ceEEeCCCCccchHHHHHHHhhc---CCCCC
Q 010475 454 CYICLLEYEEGD-SVRVLPCHHEFHKTCVDKWLKEI---HRVCP 493 (509)
Q Consensus 454 CpICLEeFeegD-~VrvLPCgHvFH~eCIdkWLke~---~~TCP 493 (509)
|+||++ |...+ ..++|+|||+|+.+||++|++.. ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 75544 47889999999999999999852 34576
No 27
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=5.4e-07 Score=97.01 Aligned_cols=53 Identities=32% Similarity=0.551 Sum_probs=42.6
Q ss_pred ccccceecccccCCCceEEeCCCCccchHHHHHHHhh----cCCCCCCcccCcCCCCCCC
Q 010475 451 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE----IHRVCPLCRGDICKPDSLP 506 (509)
Q Consensus 451 ~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke----~~~TCPLCRa~V~e~ds~P 506 (509)
+..|||||+..... ..+.|||+||..||-+++.. ....||+||..|..++..|
T Consensus 186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~p 242 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLP 242 (513)
T ss_pred CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceee
Confidence 46899999997664 45559999999999998863 2457999999998877654
No 28
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=6.9e-07 Score=81.82 Aligned_cols=45 Identities=36% Similarity=0.810 Sum_probs=40.1
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCccc
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRG 497 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa 497 (509)
.+...|+||++.|..+ ..|||+|.||..||..|+. ....||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWE-GPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC---ccccccchHhHHHHHHhcC-CCcCCcccCC
Confidence 4556899999999987 8899999999999999998 5678999994
No 29
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1e-06 Score=78.18 Aligned_cols=65 Identities=28% Similarity=0.619 Sum_probs=45.3
Q ss_pred hcCCceeeecccccc-cCCccccceeccccc------------CCC--ceEEeCCCCccchHHHHHHHhhcCCCCCCccc
Q 010475 433 ESLPVKLYTKSQKYQ-NEEVAQCYICLLEYE------------EGD--SVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRG 497 (509)
Q Consensus 433 kSLP~~~~skssk~~-~ee~eeCpICLEeFe------------egD--~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa 497 (509)
+.+..+++....... ....+.|+||...+- ..+ .+..--|.|.||..||.+||++ +..||+|..
T Consensus 27 krF~lKKWnAvAlWaWDi~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlkt-r~vCPLdn~ 105 (114)
T KOG2930|consen 27 KRFELKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKT-RNVCPLDNK 105 (114)
T ss_pred cceEEeeeeeeeeeeeeeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhh-cCcCCCcCc
Confidence 344455555544322 344568999987651 111 3566679999999999999997 889999976
Q ss_pred C
Q 010475 498 D 498 (509)
Q Consensus 498 ~ 498 (509)
+
T Consensus 106 e 106 (114)
T KOG2930|consen 106 E 106 (114)
T ss_pred c
Confidence 5
No 30
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=8.4e-07 Score=75.12 Aligned_cols=51 Identities=33% Similarity=0.777 Sum_probs=38.1
Q ss_pred Cccccceeccccc--------CCCc--eEEeCCCCccchHHHHHHHhh--cCCCCCCcccCcC
Q 010475 450 EVAQCYICLLEYE--------EGDS--VRVLPCHHEFHKTCVDKWLKE--IHRVCPLCRGDIC 500 (509)
Q Consensus 450 e~eeCpICLEeFe--------egD~--VrvLPCgHvFH~eCIdkWLke--~~~TCPLCRa~V~ 500 (509)
..+.|.||...|. +||. ++.--|.|.||..||.+||.. .+..||+||++..
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3458999999995 3333 222239999999999999973 2567999999764
No 31
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.5e-06 Score=93.51 Aligned_cols=51 Identities=29% Similarity=0.856 Sum_probs=40.0
Q ss_pred ccccceecccccCCC---c-----------eEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCC
Q 010475 451 VAQCYICLLEYEEGD---S-----------VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK 501 (509)
Q Consensus 451 ~eeCpICLEeFeegD---~-----------VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e 501 (509)
...|+|||.++..-. . -...||.|+||..|+.+|....+-.||+||.+++.
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 457999999975211 1 13459999999999999998656789999998864
No 32
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.99 E-value=5.8e-06 Score=63.72 Aligned_cols=43 Identities=28% Similarity=0.845 Sum_probs=33.5
Q ss_pred ccceecccccCCCceEEeCCC-----CccchHHHHHHHhhc-CCCCCCcc
Q 010475 453 QCYICLLEYEEGDSVRVLPCH-----HEFHKTCVDKWLKEI-HRVCPLCR 496 (509)
Q Consensus 453 eCpICLEeFeegD~VrvLPCg-----HvFH~eCIdkWLke~-~~TCPLCR 496 (509)
.|-||++ +..++...++||. |.||..|+.+|+... +.+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899999 3444455688985 899999999999752 45899995
No 33
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.98 E-value=5.2e-06 Score=85.35 Aligned_cols=53 Identities=25% Similarity=0.476 Sum_probs=40.3
Q ss_pred ccccceeccc-ccCCCc-eEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCC
Q 010475 451 VAQCYICLLE-YEEGDS-VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPD 503 (509)
Q Consensus 451 ~eeCpICLEe-FeegD~-VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~d 503 (509)
+..||||+.+ |..++. +.+-+|||.||..||+..+......||.|+..+...+
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 3579999997 434432 2333799999999999977655678999999887765
No 34
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.98 E-value=1.7e-06 Score=98.20 Aligned_cols=52 Identities=33% Similarity=0.801 Sum_probs=39.4
Q ss_pred CCccccceeccccc-CCCc---eEEeCCCCccchHHHHHHHhh-cCCCCCCcccCcC
Q 010475 449 EEVAQCYICLLEYE-EGDS---VRVLPCHHEFHKTCVDKWLKE-IHRVCPLCRGDIC 500 (509)
Q Consensus 449 ee~eeCpICLEeFe-egD~---VrvLPCgHvFH~eCIdkWLke-~~~TCPLCRa~V~ 500 (509)
.+.++|+||+..+. .+.. -++-.|.|.||..|+.+|++. .+.+||+||.+++
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 46679999998876 2211 123339999999999999985 4578999998775
No 35
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.93 E-value=3.2e-06 Score=87.85 Aligned_cols=51 Identities=27% Similarity=0.698 Sum_probs=45.2
Q ss_pred CccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCC
Q 010475 450 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDS 504 (509)
Q Consensus 450 e~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds 504 (509)
+...|.||.+-|..+ ...||+|.||.-||.++|.. +..||+|+.++.+.+.
T Consensus 22 ~lLRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~L 72 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDL 72 (442)
T ss_pred HHHHHhHHHHHhcCc---eeccccchHHHHHHHHHhcc-CCCCCceecccchhhh
Confidence 445799999999885 78899999999999999996 8999999999987764
No 36
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.83 E-value=4.7e-06 Score=68.30 Aligned_cols=49 Identities=27% Similarity=0.691 Sum_probs=24.0
Q ss_pred cccceecccccCCCc---eEEe--CCCCccchHHHHHHHhhc----------CCCCCCcccCcC
Q 010475 452 AQCYICLLEYEEGDS---VRVL--PCHHEFHKTCVDKWLKEI----------HRVCPLCRGDIC 500 (509)
Q Consensus 452 eeCpICLEeFeegD~---VrvL--PCgHvFH~eCIdkWLke~----------~~TCPLCRa~V~ 500 (509)
.+|.||+..+...+. +..- .|++.||..||.+||... ...||.|+.+|.
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 479999998763332 2222 399999999999999731 125999999874
No 37
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.74 E-value=1.2e-05 Score=82.28 Aligned_cols=50 Identities=28% Similarity=0.688 Sum_probs=42.8
Q ss_pred CccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCC
Q 010475 450 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPD 503 (509)
Q Consensus 450 e~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~d 503 (509)
....|-||-+-|..+ ...+|||.||.-||...|.+ +..||+||.+.++..
T Consensus 24 s~lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esr 73 (391)
T COG5432 24 SMLRCRICDCRISIP---CETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESR 73 (391)
T ss_pred hHHHhhhhhheeecc---eecccccchhHHHHHHHhcC-CCCCccccccHHhhh
Confidence 345799999998885 67789999999999999996 899999999876543
No 38
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=8.7e-06 Score=82.55 Aligned_cols=56 Identities=21% Similarity=0.578 Sum_probs=43.2
Q ss_pred CccccceecccccCCC-------ceEEeCCCCccchHHHHHHHhh-cCCCCCCcccCcCCCCCC
Q 010475 450 EVAQCYICLLEYEEGD-------SVRVLPCHHEFHKTCVDKWLKE-IHRVCPLCRGDICKPDSL 505 (509)
Q Consensus 450 e~eeCpICLEeFeegD-------~VrvLPCgHvFH~eCIdkWLke-~~~TCPLCRa~V~e~ds~ 505 (509)
++..|+||-..+.... +.-.|.|+|+||..||..|--- .+.+||.|+..|-.+..+
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmf 286 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMF 286 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhc
Confidence 4568999998885443 4678899999999999999852 267999999877554443
No 39
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=2.7e-05 Score=79.88 Aligned_cols=49 Identities=27% Similarity=0.499 Sum_probs=41.3
Q ss_pred ccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCC
Q 010475 451 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKP 502 (509)
Q Consensus 451 ~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ 502 (509)
..+|+||+.....+ +.|+|+|.||..||+--.+..+.+||+||.+|...
T Consensus 7 ~~eC~IC~nt~n~P---v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTGNCP---VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccCCcC---ccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 35799999987665 78999999999999987765578899999998654
No 40
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=3.4e-05 Score=81.44 Aligned_cols=50 Identities=30% Similarity=0.790 Sum_probs=37.1
Q ss_pred ccccceecccccCCCceEEeC-CCCccchHHHHHHHhhc--CCCCCCcccCcC
Q 010475 451 VAQCYICLLEYEEGDSVRVLP-CHHEFHKTCVDKWLKEI--HRVCPLCRGDIC 500 (509)
Q Consensus 451 ~eeCpICLEeFeegD~VrvLP-CgHvFH~eCIdkWLke~--~~TCPLCRa~V~ 500 (509)
.+.|.||.+-+...+.+.-+. |||+||..|+.+|+... .+.||+|+-.+.
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence 358999955554444555555 99999999999999842 258999995443
No 41
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.50 E-value=3.6e-05 Score=82.33 Aligned_cols=49 Identities=31% Similarity=0.824 Sum_probs=39.5
Q ss_pred CCccccceecccccCCCc-eEEeCCCCccchHHHHHHHhhcCCCCCCcccCcC
Q 010475 449 EEVAQCYICLLEYEEGDS-VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC 500 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~-VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~ 500 (509)
.+.-.|+||||.+...-. +....|.|-||-.|+.+|-. .+||+||.-..
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence 344579999999976542 55666999999999999986 48999997655
No 42
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=8.7e-05 Score=77.42 Aligned_cols=49 Identities=35% Similarity=0.733 Sum_probs=39.9
Q ss_pred CCccccceecccccCCCceEEeCCCCc-cchHHHHHHHhhcCCCCCCcccCcCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHE-FHKTCVDKWLKEIHRVCPLCRGDICK 501 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHv-FH~eCIdkWLke~~~TCPLCRa~V~e 501 (509)
+...+|.|||.+-.+ +.+|||.|. .|..|.+..--+ +..||+||++|..
T Consensus 288 ~~gkeCVIClse~rd---t~vLPCRHLCLCs~Ca~~Lr~q-~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRD---TVVLPCRHLCLCSGCAKSLRYQ-TNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcc---eEEecchhhehhHhHHHHHHHh-hcCCCccccchHh
Confidence 446799999998655 689999997 899998886643 6789999998854
No 43
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=4.9e-05 Score=80.60 Aligned_cols=52 Identities=37% Similarity=0.849 Sum_probs=40.8
Q ss_pred ccccceecccccCC-Cc-eEEeCCCCccchHHHHHHHhh-cCCCCCCcccCcCCC
Q 010475 451 VAQCYICLLEYEEG-DS-VRVLPCHHEFHKTCVDKWLKE-IHRVCPLCRGDICKP 502 (509)
Q Consensus 451 ~eeCpICLEeFeeg-D~-VrvLPCgHvFH~eCIdkWLke-~~~TCPLCRa~V~e~ 502 (509)
...|+|||+.|+-. +. +..|.|+|.|...||.+||-+ ....||.|..+..+.
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr 58 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKR 58 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHH
Confidence 45799999999743 33 667779999999999999953 245799998766543
No 44
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.36 E-value=5.9e-05 Score=77.60 Aligned_cols=50 Identities=36% Similarity=0.864 Sum_probs=42.2
Q ss_pred cccceecccccCCCceEEeCCCCccchHHHHHHHhh----------------------cCCCCCCcccCcCC
Q 010475 452 AQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE----------------------IHRVCPLCRGDICK 501 (509)
Q Consensus 452 eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke----------------------~~~TCPLCRa~V~e 501 (509)
.+|.|||-.|..++...+.+|.|.||..|+.++|.. ....||+||..|..
T Consensus 116 gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 479999999999999999999999999999887642 13479999998744
No 45
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.35 E-value=3.9e-05 Score=86.36 Aligned_cols=52 Identities=25% Similarity=0.512 Sum_probs=44.6
Q ss_pred ccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCC
Q 010475 451 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPD 503 (509)
Q Consensus 451 ~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~d 503 (509)
...|+|||..+..+......+|+|+||.+||..|-+ ...+||+||.++....
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR-~aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR-CAQTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh-hcccCchhhhhhheee
Confidence 357999999998876677788999999999999998 4889999999875543
No 46
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=3.6e-05 Score=80.35 Aligned_cols=54 Identities=30% Similarity=0.544 Sum_probs=43.8
Q ss_pred CccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCC
Q 010475 450 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSL 505 (509)
Q Consensus 450 e~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~ 505 (509)
.+..|+|||+-++.- +...-|.|.||..||.+-|+.....||.||+.+..+.++
T Consensus 42 ~~v~c~icl~llk~t--mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsL 95 (381)
T KOG0311|consen 42 IQVICPICLSLLKKT--MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSL 95 (381)
T ss_pred hhhccHHHHHHHHhh--cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccC
Confidence 346899999987663 333349999999999999998889999999988766554
No 47
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=9.7e-05 Score=82.83 Aligned_cols=52 Identities=23% Similarity=0.618 Sum_probs=41.9
Q ss_pred ccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCC
Q 010475 451 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSL 505 (509)
Q Consensus 451 ~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~ 505 (509)
-..|++|-..+.+ ++...|+|+||..||.+-+...++.||.|-..+-.-|..
T Consensus 643 ~LkCs~Cn~R~Kd---~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~ 694 (698)
T KOG0978|consen 643 LLKCSVCNTRWKD---AVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVH 694 (698)
T ss_pred ceeCCCccCchhh---HHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccccc
Confidence 3579999977666 345559999999999999987688999999887665544
No 48
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.00024 Score=74.29 Aligned_cols=50 Identities=32% Similarity=0.841 Sum_probs=37.5
Q ss_pred CccccceecccccCCCc----eEEeC-CCCccchHHHHHHHhhc------CCCCCCcccCc
Q 010475 450 EVAQCYICLLEYEEGDS----VRVLP-CHHEFHKTCVDKWLKEI------HRVCPLCRGDI 499 (509)
Q Consensus 450 e~eeCpICLEeFeegD~----VrvLP-CgHvFH~eCIdkWLke~------~~TCPLCRa~V 499 (509)
.+.+|.|||+...+... -..|| |.|.||..||.+|-+.. ...||.||...
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 34689999999765430 22345 99999999999999532 36799999754
No 49
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.00015 Score=58.42 Aligned_cols=46 Identities=28% Similarity=0.647 Sum_probs=35.4
Q ss_pred cccceecccccCCCceEEeCCCCc-cchHHHHHHHhhcCCCCCCcccCcC
Q 010475 452 AQCYICLLEYEEGDSVRVLPCHHE-FHKTCVDKWLKEIHRVCPLCRGDIC 500 (509)
Q Consensus 452 eeCpICLEeFeegD~VrvLPCgHv-FH~eCIdkWLke~~~TCPLCRa~V~ 500 (509)
++|.||++...+. +...|||. .|.+|-.+.++..+..||+||++|.
T Consensus 8 dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 6899999985542 34459996 7889977666546899999999874
No 50
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.87 E-value=0.00025 Score=58.43 Aligned_cols=50 Identities=26% Similarity=0.580 Sum_probs=25.8
Q ss_pred ccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCC
Q 010475 451 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSL 505 (509)
Q Consensus 451 ~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~ 505 (509)
...|++|.+-+.++ +....|.|+||..||..-+. ..||+|..+....|..
T Consensus 7 lLrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw~qD~~ 56 (65)
T PF14835_consen 7 LLRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIG---SECPVCHTPAWIQDIQ 56 (65)
T ss_dssp TTS-SSS-S--SS---B---SSS--B-TTTGGGGTT---TB-SSS--B-S-SS--
T ss_pred hcCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcC---CCCCCcCChHHHHHHH
Confidence 35799999998775 44556999999999988665 3599999998777653
No 51
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.00052 Score=73.02 Aligned_cols=49 Identities=31% Similarity=0.749 Sum_probs=42.3
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK 501 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e 501 (509)
..+.+|.||+..+..+ +.+||||.||..||++-|.+ ...||+||.++.+
T Consensus 82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhcc-CCCCccccccccc
Confidence 3456899999998875 77899999999999998874 7889999998875
No 52
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.67 E-value=0.00084 Score=70.85 Aligned_cols=55 Identities=29% Similarity=0.713 Sum_probs=46.0
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP 506 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~P 506 (509)
.+...|+||+..+.++-. ...|+|.||..||..|+.. +..||.|+..+.....+|
T Consensus 19 ~~~l~C~~C~~vl~~p~~--~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQ--TTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELP 73 (391)
T ss_pred cccccCccccccccCCCC--CCCCCCcccccccchhhcc-CcCCcccccccchhhccC
Confidence 445689999999888622 2579999999999999997 889999999887777665
No 53
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.0011 Score=63.68 Aligned_cols=30 Identities=40% Similarity=0.934 Sum_probs=27.3
Q ss_pred CCccccceecccccCCCceEEeCCCCccch
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHK 478 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~ 478 (509)
.+..+|.||||+++.++.+..|||-.+||+
T Consensus 175 ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 345689999999999999999999999996
No 54
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.28 E-value=0.0016 Score=51.86 Aligned_cols=42 Identities=26% Similarity=0.624 Sum_probs=29.0
Q ss_pred ccccceecccccCCCceEEeCCCCccchHHHHHHHhh-cCCCCCC
Q 010475 451 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE-IHRVCPL 494 (509)
Q Consensus 451 ~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke-~~~TCPL 494 (509)
...|||.+..|+++ ++...|+|+|-++.|..||+. ....||+
T Consensus 11 ~~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 45799999998875 666789999999999999942 2457998
No 55
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.21 E-value=0.0032 Score=75.00 Aligned_cols=52 Identities=29% Similarity=0.648 Sum_probs=41.0
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhhc---------CCCCCCcccCcC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI---------HRVCPLCRGDIC 500 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~---------~~TCPLCRa~V~ 500 (509)
+.++.|.||+.+--.......|.|+|+||..|...-|... --.||+|+.+|.
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 4456899999886665668899999999999998866531 127999998774
No 56
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.16 E-value=0.0019 Score=68.82 Aligned_cols=49 Identities=31% Similarity=0.615 Sum_probs=40.0
Q ss_pred ccccceecccccCCC-ceEEeCCCCccchHHHHHHHhh-cCCCCCCcccCc
Q 010475 451 VAQCYICLLEYEEGD-SVRVLPCHHEFHKTCVDKWLKE-IHRVCPLCRGDI 499 (509)
Q Consensus 451 ~eeCpICLEeFeegD-~VrvLPCgHvFH~eCIdkWLke-~~~TCPLCRa~V 499 (509)
+.-|..|=+.+...+ .+..|||.|+||..|+...|.+ ...+||.||.-.
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crklr 415 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLR 415 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 456999999987655 4888999999999999999964 346899999533
No 57
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.07 E-value=0.0022 Score=68.52 Aligned_cols=49 Identities=29% Similarity=0.738 Sum_probs=39.3
Q ss_pred ccccceecccccCCCceEEeCCCCccchHHHHHHHhhc-CCCCCCcccCcCCC
Q 010475 451 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI-HRVCPLCRGDICKP 502 (509)
Q Consensus 451 ~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~-~~TCPLCRa~V~e~ 502 (509)
-+.|-||-+.- ..|.+-||||..|..|+..|-... ..+||.||.+|...
T Consensus 369 FeLCKICaend---KdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 369 FELCKICAEND---KDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHHhhccC---CCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 35799998763 347888999999999999999642 56899999988544
No 58
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.03 E-value=0.0026 Score=58.92 Aligned_cols=36 Identities=22% Similarity=0.574 Sum_probs=30.8
Q ss_pred ccccceecccccCCCceEEeCCC------CccchHHHHHHHh
Q 010475 451 VAQCYICLLEYEEGDSVRVLPCH------HEFHKTCVDKWLK 486 (509)
Q Consensus 451 ~eeCpICLEeFeegD~VrvLPCg------HvFH~eCIdkWLk 486 (509)
..+|.||++.+...+.++.++|+ |.||.+|+.+|-.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 45899999999885568888887 8899999999943
No 59
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.84 E-value=0.0067 Score=66.76 Aligned_cols=56 Identities=23% Similarity=0.580 Sum_probs=43.3
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhh----cCCCCCCcccCcCCCCCCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE----IHRVCPLCRGDICKPDSLPS 507 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke----~~~TCPLCRa~V~e~ds~P~ 507 (509)
.+..+|-+|-++-++ .....|.|.||..||..++.. .+-+||+|-..+....+-|.
T Consensus 534 k~~~~C~lc~d~aed---~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~a 593 (791)
T KOG1002|consen 534 KGEVECGLCHDPAED---YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPA 593 (791)
T ss_pred cCceeecccCChhhh---hHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchh
Confidence 455689999988555 356679999999999998863 24689999988877665554
No 60
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.82 E-value=0.015 Score=58.09 Aligned_cols=55 Identities=22% Similarity=0.454 Sum_probs=43.1
Q ss_pred CCccccceecccccCCCc-eEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCC
Q 010475 449 EEVAQCYICLLEYEEGDS-VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSL 505 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~-VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~ 505 (509)
.....|||+..+|..... +...||||+|...+|..- + ....||+|-.++...|.+
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k-~~~~Cp~c~~~f~~~DiI 166 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-K-KSKKCPVCGKPFTEEDII 166 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-c-ccccccccCCccccCCEE
Confidence 456789999999965555 445589999999999996 3 246799999998877665
No 61
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.025 Score=59.22 Aligned_cols=46 Identities=20% Similarity=0.391 Sum_probs=35.9
Q ss_pred CCccccceecccccCCCceEEeC-CCCccchHHHHHHHhhcCCCCCCcccC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLP-CHHEFHKTCVDKWLKEIHRVCPLCRGD 498 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLP-CgHvFH~eCIdkWLke~~~TCPLCRa~ 498 (509)
.+...|+||+..-..+ .+|. -|-+||..||-.++.+ +..||+=--+
T Consensus 298 ~~~~~CpvClk~r~Np---tvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p 344 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNP---TVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYP 344 (357)
T ss_pred CccccChhHHhccCCC---ceEEecceEEeHHHHHHHHHh-cCCCCccCCc
Confidence 4456899999987665 3333 5999999999999996 8999985433
No 62
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.0082 Score=61.52 Aligned_cols=50 Identities=18% Similarity=0.321 Sum_probs=39.2
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhh-cCCCCCCcccCcC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE-IHRVCPLCRGDIC 500 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke-~~~TCPLCRa~V~ 500 (509)
....+|++|-+....+ ....+|+|+||..||..=+.. ...+||.|-.++.
T Consensus 237 t~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 4567899999986665 456679999999999986652 2478999987765
No 63
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.60 E-value=0.0048 Score=51.95 Aligned_cols=33 Identities=27% Similarity=0.680 Sum_probs=27.7
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHH
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVD 482 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCId 482 (509)
.+...|+||-..+.. ....+.||+|+||..|+.
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 345679999999876 567889999999999975
No 64
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=95.49 E-value=0.0093 Score=45.69 Aligned_cols=41 Identities=37% Similarity=0.997 Sum_probs=28.1
Q ss_pred cceecccccCCCceEEeCCC--C---ccchHHHHHHHhh-cCCCCCCc
Q 010475 454 CYICLLEYEEGDSVRVLPCH--H---EFHKTCVDKWLKE-IHRVCPLC 495 (509)
Q Consensus 454 CpICLEeFeegD~VrvLPCg--H---vFH~eCIdkWLke-~~~TCPLC 495 (509)
|-||+++..+.+ ..+.||. - ..|..|+.+|+.. ....|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 779999977655 4567865 3 7899999999984 34679988
No 65
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.016 Score=58.39 Aligned_cols=53 Identities=28% Similarity=0.630 Sum_probs=42.7
Q ss_pred ccccceecccccCCCceEEeCCCCccchHHHHHHHhh-------cCCCCCCcccCcCCCCC
Q 010475 451 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE-------IHRVCPLCRGDICKPDS 504 (509)
Q Consensus 451 ~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke-------~~~TCPLCRa~V~e~ds 504 (509)
...|.+|-..+..+|.+ .|-|-|+||.+|+..|-.. .-..||.|-.+|..+..
T Consensus 50 ~pNC~LC~t~La~gdt~-RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~N 109 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTT-RLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPIN 109 (299)
T ss_pred CCCCceeCCccccCcce-eehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCcc
Confidence 34699999999888766 5779999999999999864 13479999998866543
No 66
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=95.27 E-value=0.0064 Score=63.38 Aligned_cols=54 Identities=30% Similarity=0.593 Sum_probs=40.9
Q ss_pred CccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCCC
Q 010475 450 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP 506 (509)
Q Consensus 450 e~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~P 506 (509)
....|.+|-.-|-+. ..+.-|-|.||+.||.+.|.+ ..+||.|...|-......
T Consensus 14 ~~itC~LC~GYliDA--TTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ 67 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDA--TTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLL 67 (331)
T ss_pred cceehhhccceeecc--hhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccc
Confidence 345799998776553 223349999999999999997 889999998776554443
No 67
>PHA02862 5L protein; Provisional
Probab=95.18 E-value=0.014 Score=55.14 Aligned_cols=47 Identities=23% Similarity=0.554 Sum_probs=35.8
Q ss_pred cccceecccccCCCceEEeCCC-----CccchHHHHHHHhh-cCCCCCCcccCcCCC
Q 010475 452 AQCYICLLEYEEGDSVRVLPCH-----HEFHKTCVDKWLKE-IHRVCPLCRGDICKP 502 (509)
Q Consensus 452 eeCpICLEeFeegD~VrvLPCg-----HvFH~eCIdkWLke-~~~TCPLCRa~V~e~ 502 (509)
..|=||+++-++. .-||. ..-|.+|+.+|++. .+..||+|+.++.-+
T Consensus 3 diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 3 DICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 4799999985443 36765 57999999999974 356799999987543
No 68
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.14 E-value=0.0082 Score=46.94 Aligned_cols=45 Identities=29% Similarity=0.624 Sum_probs=23.0
Q ss_pred cceecccccCCCceEEeC--CCCccchHHHHHHHhhcCCCCCCcccCc
Q 010475 454 CYICLLEYEEGDSVRVLP--CHHEFHKTCVDKWLKEIHRVCPLCRGDI 499 (509)
Q Consensus 454 CpICLEeFeegD~VrvLP--CgHvFH~eCIdkWLke~~~TCPLCRa~V 499 (509)
|++|.+++...+ ...+| |++..+..|..+-++.....||-||.+.
T Consensus 1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 799999994433 23455 8999999998887764478899999864
No 69
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.11 E-value=0.026 Score=57.39 Aligned_cols=56 Identities=21% Similarity=0.336 Sum_probs=48.1
Q ss_pred CccccceecccccCCCceEEe-CCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCCC
Q 010475 450 EVAQCYICLLEYEEGDSVRVL-PCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP 506 (509)
Q Consensus 450 e~eeCpICLEeFeegD~VrvL-PCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~P 506 (509)
.-+.|+||.+.+..--.+.+| ||||+|+.+|+.+.+.. ...||+|-.++.+.+.++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceEe
Confidence 456899999999887777777 59999999999999985 889999999988887654
No 70
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.08 E-value=0.016 Score=60.26 Aligned_cols=53 Identities=26% Similarity=0.570 Sum_probs=40.9
Q ss_pred cccceecccccCCCceEEeC-CCCccchHHHHHHHhhcCCCCCCc-ccCcCCCCCCCC
Q 010475 452 AQCYICLLEYEEGDSVRVLP-CHHEFHKTCVDKWLKEIHRVCPLC-RGDICKPDSLPS 507 (509)
Q Consensus 452 eeCpICLEeFeegD~VrvLP-CgHvFH~eCIdkWLke~~~TCPLC-Ra~V~e~ds~P~ 507 (509)
..|+.|-.-+..+ ...| |+|.||.+||..-|......||.| |.+|......|.
T Consensus 275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD 329 (427)
T COG5222 275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPD 329 (427)
T ss_pred ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCcc
Confidence 5799998876654 3445 999999999999887668899999 556666555553
No 71
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.017 Score=61.22 Aligned_cols=65 Identities=22% Similarity=0.411 Sum_probs=45.9
Q ss_pred HhcCCceeeecccccc-cCCccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcC
Q 010475 432 VESLPVKLYTKSQKYQ-NEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC 500 (509)
Q Consensus 432 IkSLP~~~~skssk~~-~ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~ 500 (509)
++.+|..+.....+.. ..++..|+||....- ..+..||+|.-|..||.+.|.. ...|=.|+..+.
T Consensus 402 ~~~l~~~~~~~~~~~lp~sEd~lCpICyA~pi---~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~ 467 (489)
T KOG4692|consen 402 SSQLPERKEESFNKDLPDSEDNLCPICYAGPI---NAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVI 467 (489)
T ss_pred HhhcchhhHHhhcCCCCCcccccCcceecccc---hhhccCCCCchHHHHHHHHHhc-CCeeeEecceee
Confidence 3444444433333322 356678999987532 2467899999999999999985 778999998876
No 72
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=0.021 Score=60.22 Aligned_cols=45 Identities=29% Similarity=0.552 Sum_probs=33.4
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC 500 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~ 500 (509)
.....|.||+++... ..-+||||+-| |+.--. +-.+||+||..|.
T Consensus 303 ~~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs~--~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKS---AVFVPCGHVCC--CTLCSK--HLPQCPVCRQRIR 347 (355)
T ss_pred CCCCceEEecCCccc---eeeecCCcEEE--chHHHh--hCCCCchhHHHHH
Confidence 334579999998766 68899999966 655433 2567999998763
No 73
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=94.65 E-value=0.022 Score=65.39 Aligned_cols=48 Identities=29% Similarity=0.753 Sum_probs=36.6
Q ss_pred CCccccceecccccCCCce-EEeCCCCccchHHHHHHHhhcC------CCCCCcc
Q 010475 449 EEVAQCYICLLEYEEGDSV-RVLPCHHEFHKTCVDKWLKEIH------RVCPLCR 496 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~V-rvLPCgHvFH~eCIdkWLke~~------~TCPLCR 496 (509)
.+.++|.||++.+..-+.+ ..-.|-|+||..||.+|-.... -.||.|.
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cq 243 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQ 243 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCccc
Confidence 3456899999998766543 3334999999999999997422 2599998
No 74
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.02 Score=57.26 Aligned_cols=48 Identities=35% Similarity=0.803 Sum_probs=40.7
Q ss_pred cccceecccccCCCc---eEEeCCCCccchHHHHHHHhhcCCCCCCcccCc
Q 010475 452 AQCYICLLEYEEGDS---VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI 499 (509)
Q Consensus 452 eeCpICLEeFeegD~---VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V 499 (509)
.+|-||-++|...+. .+.|.|||.|+..|+.+-+....-.||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 479999999987642 677889999999999999986566799999984
No 75
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.27 E-value=0.016 Score=57.45 Aligned_cols=44 Identities=27% Similarity=0.564 Sum_probs=36.8
Q ss_pred cccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCc
Q 010475 452 AQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI 499 (509)
Q Consensus 452 eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V 499 (509)
..|.||-++|+.+ ++..|||.||..|..+-.+. -..|-+|-+..
T Consensus 197 F~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYESP---VVTECGHSFCSLCAIRKYQK-GDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccch---hhhhcchhHHHHHHHHHhcc-CCcceecchhh
Confidence 4799999999886 77889999999998887775 67899996543
No 76
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.24 E-value=0.034 Score=53.16 Aligned_cols=50 Identities=26% Similarity=0.656 Sum_probs=36.3
Q ss_pred CCccccceecccccCCCceEEeCCCC-----ccchHHHHHHHhh-cCCCCCCcccCcCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHH-----EFHKTCVDKWLKE-IHRVCPLCRGDICKP 502 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgH-----vFH~eCIdkWLke-~~~TCPLCRa~V~e~ 502 (509)
..+..|=||.++..+ ..-||.. .-|.+|+++|+.. ....||+|..++.-.
T Consensus 6 ~~~~~CRIC~~~~~~----~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 6 LMDKCCWICKDEYDV----VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCeeEecCCCCCC----ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 345689999988532 2357654 5699999999974 346799999877543
No 77
>PHA03096 p28-like protein; Provisional
Probab=93.85 E-value=0.03 Score=57.43 Aligned_cols=45 Identities=29% Similarity=0.545 Sum_probs=32.3
Q ss_pred cccceecccccCCC----ceEEeC-CCCccchHHHHHHHhhc--CCCCCCcc
Q 010475 452 AQCYICLLEYEEGD----SVRVLP-CHHEFHKTCVDKWLKEI--HRVCPLCR 496 (509)
Q Consensus 452 eeCpICLEeFeegD----~VrvLP-CgHvFH~eCIdkWLke~--~~TCPLCR 496 (509)
..|.|||+...... .-..|+ |.|.||..||..|-.+. ..+||.||
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~ 230 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENR 230 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence 57999999876532 234566 99999999999999742 23455554
No 78
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.52 E-value=0.077 Score=56.33 Aligned_cols=65 Identities=26% Similarity=0.499 Sum_probs=43.5
Q ss_pred HHHhcCCceeeecccccccCCccccceecccccCCCceEEeCCCCccchHHHHHHHh-hcCCCCCCcccC
Q 010475 430 EVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLK-EIHRVCPLCRGD 498 (509)
Q Consensus 430 evIkSLP~~~~skssk~~~ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLk-e~~~TCPLCRa~ 498 (509)
..+...|.. .+....+..++...|.||-+.+.- +.++||+|..|.-|..+.-. -....||+||.+
T Consensus 41 NnlsaEPnl-ttsSaddtDEen~~C~ICA~~~TY---s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 41 NNLSAEPNL-TTSSADDTDEENMNCQICAGSTTY---SARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred cccccCCcc-ccccccccccccceeEEecCCceE---EEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 334444442 233334445666789999887654 68999999999999765322 125789999975
No 79
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=0.0055 Score=65.27 Aligned_cols=49 Identities=29% Similarity=0.661 Sum_probs=43.1
Q ss_pred cccceecccccCC-CceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCC
Q 010475 452 AQCYICLLEYEEG-DSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK 501 (509)
Q Consensus 452 eeCpICLEeFeeg-D~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e 501 (509)
..|+||.+.|... +++..+-|+|.+|..||.+||.. ...||.|+.++..
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~-~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT-KRKLPSCRRELPK 246 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH-HHHhHHHHhhhhh
Confidence 4799999999876 66778889999999999999997 7889999988764
No 80
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=93.46 E-value=0.029 Score=57.52 Aligned_cols=47 Identities=28% Similarity=0.540 Sum_probs=39.8
Q ss_pred ccceecccccCCCc-eEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCC
Q 010475 453 QCYICLLEYEEGDS-VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK 501 (509)
Q Consensus 453 eCpICLEeFeegD~-VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e 501 (509)
.||||.+.+..... +..++|+|.-|..|....... ..+||+|.+ +.+
T Consensus 160 ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~-~y~CP~C~~-~~d 207 (276)
T KOG1940|consen 160 NCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE-GYTCPICSK-PGD 207 (276)
T ss_pred CCchhHHHhccccccCCccCcccchHHHHHHHHhcc-CCCCCcccc-hHH
Confidence 49999999877654 778999999999999999987 499999987 543
No 81
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.40 E-value=0.067 Score=57.55 Aligned_cols=37 Identities=30% Similarity=0.772 Sum_probs=32.3
Q ss_pred CccccceecccccCCCceEEeCCCCccchHHHHHHHh
Q 010475 450 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLK 486 (509)
Q Consensus 450 e~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLk 486 (509)
....|.||+++..-.+-...|||+|+||+.|+..+..
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFT 219 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHH
Confidence 4568999999976557789999999999999999986
No 82
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.99 E-value=0.032 Score=57.75 Aligned_cols=44 Identities=25% Similarity=0.545 Sum_probs=38.0
Q ss_pred cccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCc
Q 010475 452 AQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI 499 (509)
Q Consensus 452 eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V 499 (509)
..|-||...|..+ ++..|+|.||..|..+-++. ...|++|-+.+
T Consensus 242 f~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t 285 (313)
T KOG1813|consen 242 FKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQK-GEKCYVCSQQT 285 (313)
T ss_pred ccccccccccccc---hhhcCCceeehhhhcccccc-CCcceeccccc
Confidence 4699999999886 77889999999999888875 67899997765
No 83
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.39 E-value=0.028 Score=58.26 Aligned_cols=42 Identities=29% Similarity=0.624 Sum_probs=31.9
Q ss_pred ccccceecccccCCCceEEeCCCCc-cchHHHHHHHhhcCCCCCCcccCcC
Q 010475 451 VAQCYICLLEYEEGDSVRVLPCHHE-FHKTCVDKWLKEIHRVCPLCRGDIC 500 (509)
Q Consensus 451 ~eeCpICLEeFeegD~VrvLPCgHv-FH~eCIdkWLke~~~TCPLCRa~V~ 500 (509)
...|.|||+...+ ...|+|||. -|.+|-+. -..||+||+.|.
T Consensus 300 ~~LC~ICmDaP~D---CvfLeCGHmVtCt~CGkr-----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRD---CVFLECGHMVTCTKCGKR-----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcc---eEEeecCcEEeehhhccc-----cccCchHHHHHH
Confidence 4579999987544 789999995 57778654 237999998764
No 84
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.00 E-value=0.097 Score=55.45 Aligned_cols=53 Identities=19% Similarity=0.481 Sum_probs=39.2
Q ss_pred ccccceecccccCCCc-eEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCC
Q 010475 451 VAQCYICLLEYEEGDS-VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPD 503 (509)
Q Consensus 451 ~eeCpICLEeFeegD~-VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~d 503 (509)
++-|++|++++...|+ -.-.|||-..|.-|....-+..+..||-||....+.+
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred cccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 3459999999987765 3345689888888866655555779999998776554
No 85
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.90 E-value=0.039 Score=62.50 Aligned_cols=49 Identities=31% Similarity=0.622 Sum_probs=38.5
Q ss_pred cccceecccccCCCceEEeCCCCccchHHHHHHHhhcCC-CCCCcccCcCCCCC
Q 010475 452 AQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHR-VCPLCRGDICKPDS 504 (509)
Q Consensus 452 eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~-TCPLCRa~V~e~ds 504 (509)
..|.||++ .+.....+|+|.||.+|+.+-+..... .||+||..+...+.
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l 504 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKL 504 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHH
Confidence 68999999 344678889999999999998874333 59999987755443
No 86
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.92 E-value=0.12 Score=59.83 Aligned_cols=42 Identities=21% Similarity=0.645 Sum_probs=34.0
Q ss_pred cccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCc
Q 010475 452 AQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI 499 (509)
Q Consensus 452 eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V 499 (509)
..|.+|--.++.+ .+..-|+|.||.+|+.. ....||-|+.++
T Consensus 841 skCs~C~~~LdlP--~VhF~CgHsyHqhC~e~----~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 841 SKCSACEGTLDLP--FVHFLCGHSYHQHCLED----KEDKCPKCLPEL 882 (933)
T ss_pred eeecccCCccccc--eeeeecccHHHHHhhcc----CcccCCccchhh
Confidence 4799999888765 66777999999999882 356899998743
No 87
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=90.26 E-value=0.29 Score=46.99 Aligned_cols=33 Identities=27% Similarity=0.583 Sum_probs=22.1
Q ss_pred ccccceecccccCCCceEEeCCC-------------CccchHHHHHHHh
Q 010475 451 VAQCYICLLEYEEGDSVRVLPCH-------------HEFHKTCVDKWLK 486 (509)
Q Consensus 451 ~eeCpICLEeFeegD~VrvLPCg-------------HvFH~eCIdkWLk 486 (509)
+..|+|||+-.... +.|-|. -.-|..|++++-+
T Consensus 2 d~~CpICme~PHNA---VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 2 DVTCPICMEHPHNA---VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CccCceeccCCCce---EEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 46899999986553 444443 2257789999765
No 88
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.80 E-value=0.76 Score=49.42 Aligned_cols=50 Identities=20% Similarity=0.369 Sum_probs=41.8
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhhcC--CCCCCcccC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIH--RVCPLCRGD 498 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~--~TCPLCRa~ 498 (509)
...-.|||=.+.-.+......|.|||+..++-|.+..+.+. ..||.|=.+
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred cceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 34567999888888878899999999999999999888655 679999443
No 89
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.12 E-value=0.37 Score=47.43 Aligned_cols=34 Identities=32% Similarity=0.892 Sum_probs=26.5
Q ss_pred EeCCCCccchHHHHHHHhhc----------CCCCCCcccCcCCC
Q 010475 469 VLPCHHEFHKTCVDKWLKEI----------HRVCPLCRGDICKP 502 (509)
Q Consensus 469 vLPCgHvFH~eCIdkWLke~----------~~TCPLCRa~V~e~ 502 (509)
...|+.-||.-|+..||... -..||.|-.+|.-+
T Consensus 187 N~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 187 NIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred ccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 34599999999999999731 13699999887544
No 90
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.03 E-value=0.26 Score=50.53 Aligned_cols=52 Identities=29% Similarity=0.758 Sum_probs=37.1
Q ss_pred CCccccceecccccCCCce-EEeCCC-----CccchHHHHHHHhhcC-------CCCCCcccCcC
Q 010475 449 EEVAQCYICLLEYEEGDSV-RVLPCH-----HEFHKTCVDKWLKEIH-------RVCPLCRGDIC 500 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~V-rvLPCg-----HvFH~eCIdkWLke~~-------~TCPLCRa~V~ 500 (509)
+.+..|-||+..=++.... -+-||. |..|..|+..|+.+.. -.||.|+.+..
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 3455799999985544322 345664 8899999999997522 25999998764
No 91
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=87.80 E-value=0.18 Score=38.10 Aligned_cols=42 Identities=24% Similarity=0.652 Sum_probs=23.0
Q ss_pred cceecccccCCCceEEeCCCCccchHHHHHHHhhcCC-CCCCc
Q 010475 454 CYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHR-VCPLC 495 (509)
Q Consensus 454 CpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~-TCPLC 495 (509)
|.+|.+-...|.......|.=.+|..|+..+++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 6778777777622222238889999999999985332 69988
No 92
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=87.47 E-value=0.54 Score=37.81 Aligned_cols=43 Identities=30% Similarity=0.828 Sum_probs=32.9
Q ss_pred ccccceecccccCCCceEEeC-CCCccchHHHHHHHhhcCCCCCC--cccC
Q 010475 451 VAQCYICLLEYEEGDSVRVLP-CHHEFHKTCVDKWLKEIHRVCPL--CRGD 498 (509)
Q Consensus 451 ~eeCpICLEeFeegD~VrvLP-CgHvFH~eCIdkWLke~~~TCPL--CRa~ 498 (509)
...|++|-+.|.+++.+++-| |+-.||+.| |.+ ...|-+ |...
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C---~~~--~g~C~~~~c~~~ 50 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDC---WEK--AGGCINYSCGTG 50 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHH---Hhh--CCceEeccCCCC
Confidence 457999999999888777777 999999999 554 355644 5443
No 93
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=87.39 E-value=0.36 Score=38.98 Aligned_cols=46 Identities=26% Similarity=0.489 Sum_probs=33.3
Q ss_pred cccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCC
Q 010475 452 AQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPD 503 (509)
Q Consensus 452 eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~d 503 (509)
..|..|...-.. -.++||+|+.+..|..-|= -.-||+|-.++...+
T Consensus 8 ~~~~~~~~~~~~---~~~~pCgH~I~~~~f~~~r---YngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 8 QPCVFCGFVGTK---GTVLPCGHLICDNCFPGER---YNGCPFCGTPFEFDD 53 (55)
T ss_pred eeEEEccccccc---cccccccceeeccccChhh---ccCCCCCCCcccCCC
Confidence 357766655333 4789999999999977643 357999988876544
No 94
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.03 E-value=0.17 Score=57.16 Aligned_cols=46 Identities=26% Similarity=0.489 Sum_probs=34.5
Q ss_pred CCccccceecccccCCC-ceEEeCCCCccchHHHHHHHhhcCCCCCCcccC
Q 010475 449 EEVAQCYICLLEYEEGD-SVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGD 498 (509)
Q Consensus 449 ee~eeCpICLEeFeegD-~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~ 498 (509)
.+...|.||+..|.... ..+.|-|||..|.+|++.-.. .+|| |+.+
T Consensus 9 ~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp-~~~D 55 (861)
T KOG3161|consen 9 VLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCP-TKRD 55 (861)
T ss_pred HHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCC-CCcc
Confidence 34467999999886543 246677999999999998654 5899 6553
No 95
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=86.58 E-value=0.45 Score=50.60 Aligned_cols=32 Identities=31% Similarity=0.848 Sum_probs=25.0
Q ss_pred CCCccchHHHHHHHhh------------cCCCCCCcccCcCCCC
Q 010475 472 CHHEFHKTCVDKWLKE------------IHRVCPLCRGDICKPD 503 (509)
Q Consensus 472 CgHvFH~eCIdkWLke------------~~~TCPLCRa~V~e~d 503 (509)
|.-.+|.+|+-+|+.. .+..||+||+.++--|
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 6667889999999963 2447999999987554
No 96
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=86.35 E-value=0.31 Score=51.22 Aligned_cols=43 Identities=28% Similarity=0.726 Sum_probs=29.4
Q ss_pred ccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcC
Q 010475 453 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC 500 (509)
Q Consensus 453 eCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~ 500 (509)
-|--|--.+.. .-+.+||+|+||.+|... .. ...||.|-..|.
T Consensus 92 fCd~Cd~PI~I--YGRmIPCkHvFCl~CAr~--~~-dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 92 FCDRCDFPIAI--YGRMIPCKHVFCLECARS--DS-DKICPLCDDRVQ 134 (389)
T ss_pred eecccCCccee--eecccccchhhhhhhhhc--Cc-cccCcCcccHHH
Confidence 46666544332 346789999999999654 22 458999976653
No 97
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=84.13 E-value=0.65 Score=46.00 Aligned_cols=51 Identities=27% Similarity=0.684 Sum_probs=37.5
Q ss_pred ccccceecccccCCCc-eEEeCCC-----CccchHHHHHHHhh-cCCCCCCcccCcCC
Q 010475 451 VAQCYICLLEYEEGDS-VRVLPCH-----HEFHKTCVDKWLKE-IHRVCPLCRGDICK 501 (509)
Q Consensus 451 ~eeCpICLEeFeegD~-VrvLPCg-----HvFH~eCIdkWLke-~~~TCPLCRa~V~e 501 (509)
...|-||.++...... ....||. +..|..|+++|+.. ....|.+|......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 4689999998765432 4567765 56899999999972 35679999875543
No 98
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=83.74 E-value=0.59 Score=54.10 Aligned_cols=49 Identities=14% Similarity=0.225 Sum_probs=36.2
Q ss_pred ccccceecccccCCC-ceEEeC---CCCccchHHHHHHHhh-----cCCCCCCcccCc
Q 010475 451 VAQCYICLLEYEEGD-SVRVLP---CHHEFHKTCVDKWLKE-----IHRVCPLCRGDI 499 (509)
Q Consensus 451 ~eeCpICLEeFeegD-~VrvLP---CgHvFH~eCIdkWLke-----~~~TCPLCRa~V 499 (509)
...|.||..++..++ ....+| |+|.||..||..|+.. .+..|++|.+-|
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 346888888777643 345556 9999999999999973 356789887644
No 99
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=81.95 E-value=0.48 Score=57.08 Aligned_cols=43 Identities=30% Similarity=0.660 Sum_probs=36.0
Q ss_pred cccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCccc
Q 010475 452 AQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRG 497 (509)
Q Consensus 452 eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa 497 (509)
..|.||++.+... -.+.-|+|.||..|+..|+.. +..||.|+.
T Consensus 1154 ~~c~ic~dil~~~--~~I~~cgh~~c~~c~~~~l~~-~s~~~~~ks 1196 (1394)
T KOG0298|consen 1154 FVCEICLDILRNQ--GGIAGCGHEPCCRCDELWLYA-SSRCPICKS 1196 (1394)
T ss_pred cchHHHHHHHHhc--CCeeeechhHhhhHHHHHHHH-hccCcchhh
Confidence 4799999998732 245669999999999999995 889999974
No 100
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.91 E-value=0.68 Score=54.02 Aligned_cols=35 Identities=26% Similarity=0.533 Sum_probs=28.1
Q ss_pred CccccceecccccCCCceEEeCCCCccchHHHHHHH
Q 010475 450 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWL 485 (509)
Q Consensus 450 e~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWL 485 (509)
..+.|.||...+... .-.+.||||.||..||.+-.
T Consensus 816 p~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred CccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence 457899999887543 45678999999999998755
No 101
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=81.43 E-value=1 Score=52.45 Aligned_cols=56 Identities=27% Similarity=0.605 Sum_probs=41.2
Q ss_pred cCCccccceecccccCCCceEEeCCCC-----ccchHHHHHHHhh-cCCCCCCcccCcCCCCC
Q 010475 448 NEEVAQCYICLLEYEEGDSVRVLPCHH-----EFHKTCVDKWLKE-IHRVCPLCRGDICKPDS 504 (509)
Q Consensus 448 ~ee~eeCpICLEeFeegD~VrvLPCgH-----vFH~eCIdkWLke-~~~TCPLCRa~V~e~ds 504 (509)
.++...|-||..+-.+++.+ .-||++ ..|.+|+..|+.- ....|-+|+.++.-++.
T Consensus 9 N~d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~I 70 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDI 70 (1175)
T ss_pred CccchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeee
Confidence 34557899999986665443 567764 5899999999973 24579999988755543
No 102
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=79.33 E-value=1.3 Score=46.14 Aligned_cols=45 Identities=24% Similarity=0.616 Sum_probs=35.3
Q ss_pred CCccccceecccccCCCceEEeCC--CCccchHHHHHHHhhcCCCCCCcccCcCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPC--HHEFHKTCVDKWLKEIHRVCPLCRGDICK 501 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPC--gHvFH~eCIdkWLke~~~TCPLCRa~V~e 501 (509)
.+..+||||.+.+..+ .+.| ||+-|..|-.+ ....||.||.++.+
T Consensus 46 ~~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~~----~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPP----IFQCDNGHLACSSCRTK----VSNKCPTCRLPIGN 92 (299)
T ss_pred hhhccCchhhccCccc----ceecCCCcEehhhhhhh----hcccCCcccccccc
Confidence 4556899999999885 5667 69999988664 25679999998863
No 103
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.98 E-value=2.2 Score=42.13 Aligned_cols=39 Identities=36% Similarity=0.854 Sum_probs=28.7
Q ss_pred cceecccccCCCceEEeCCCCc-cchHHHHHHHhhcCCCCCCcccCcC
Q 010475 454 CYICLLEYEEGDSVRVLPCHHE-FHKTCVDKWLKEIHRVCPLCRGDIC 500 (509)
Q Consensus 454 CpICLEeFeegD~VrvLPCgHv-FH~eCIdkWLke~~~TCPLCRa~V~ 500 (509)
|-+|-+. +..|..|||.|. +|..|-.. + ..||+|+....
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~-~----~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDES-L----RICPICRSPKT 200 (207)
T ss_pred ceecCcC---CceEEeecccceEeccccccc-C----ccCCCCcChhh
Confidence 8888665 445889999865 88889655 2 36999998653
No 104
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.32 E-value=0.99 Score=48.14 Aligned_cols=37 Identities=38% Similarity=0.776 Sum_probs=28.0
Q ss_pred CccccceecccccCC-CceEEeCCCCccchHHHHHHHh
Q 010475 450 EVAQCYICLLEYEEG-DSVRVLPCHHEFHKTCVDKWLK 486 (509)
Q Consensus 450 e~eeCpICLEeFeeg-D~VrvLPCgHvFH~eCIdkWLk 486 (509)
...+|.||+.++... +.-.++-|+|.||.+|+.+.++
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence 356899999555444 3444566999999999999887
No 105
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=77.23 E-value=2 Score=40.47 Aligned_cols=53 Identities=21% Similarity=0.481 Sum_probs=36.6
Q ss_pred CccccceecccccCCCceE-EeCCCCccchHHHHHHHh--hcCCCCCCcccCcCCC
Q 010475 450 EVAQCYICLLEYEEGDSVR-VLPCHHEFHKTCVDKWLK--EIHRVCPLCRGDICKP 502 (509)
Q Consensus 450 e~eeCpICLEeFeegD~Vr-vLPCgHvFH~eCIdkWLk--e~~~TCPLCRa~V~e~ 502 (509)
...+|.||.|.-.+..-+. .--||-..|..|-....+ ..+.+||+|+..+...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 4568999999866542111 111999999998766555 2467899999877544
No 106
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=75.04 E-value=0.76 Score=52.45 Aligned_cols=47 Identities=38% Similarity=0.785 Sum_probs=37.3
Q ss_pred cccceecccccCCCceEEeCCCCccchHHHHHHHhh--cCCCCCCcccCcCC
Q 010475 452 AQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE--IHRVCPLCRGDICK 501 (509)
Q Consensus 452 eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke--~~~TCPLCRa~V~e 501 (509)
.+|+||+..|.++ ..+.|.|.|+..|+..-|.. ....||+|+..+..
T Consensus 22 lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 22 LECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred ccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 4799999999886 67789999999998876643 24579999976543
No 107
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.02 E-value=1.6 Score=45.89 Aligned_cols=32 Identities=25% Similarity=0.719 Sum_probs=25.3
Q ss_pred CCCccchHHHHHHHhh------------cCCCCCCcccCcCCCC
Q 010475 472 CHHEFHKTCVDKWLKE------------IHRVCPLCRGDICKPD 503 (509)
Q Consensus 472 CgHvFH~eCIdkWLke------------~~~TCPLCRa~V~e~d 503 (509)
|...+|.+|+.+|+.. ++.+||+||+.++.-|
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 6778899999999842 3568999999887544
No 109
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=73.95 E-value=1.8 Score=44.47 Aligned_cols=47 Identities=26% Similarity=0.595 Sum_probs=35.9
Q ss_pred ccccceecccc-cCCCc-eEEeC-CCCccchHHHHHHHhhcCCCCC--Cccc
Q 010475 451 VAQCYICLLEY-EEGDS-VRVLP-CHHEFHKTCVDKWLKEIHRVCP--LCRG 497 (509)
Q Consensus 451 ~eeCpICLEeF-eegD~-VrvLP-CgHvFH~eCIdkWLke~~~TCP--LCRa 497 (509)
+..||||..+- -.++. +.+-| |-|..|..|+++-+..+...|| -|-.
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 35799999874 34443 33345 9999999999999988788999 6743
No 110
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=72.93 E-value=2.2 Score=49.52 Aligned_cols=39 Identities=36% Similarity=0.779 Sum_probs=27.2
Q ss_pred cceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCC
Q 010475 454 CYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPL 494 (509)
Q Consensus 454 CpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPL 494 (509)
|.||--.. .+....++.|+|+.|..|...|+.. ...||.
T Consensus 1031 C~~C~l~V-~gss~~Cg~C~Hv~H~sc~~eWf~~-gd~Cps 1069 (1081)
T KOG0309|consen 1031 CAICHLAV-RGSSNFCGTCGHVGHTSCMMEWFRT-GDVCPS 1069 (1081)
T ss_pred eeeEeeEe-eccchhhccccccccHHHHHHHHhc-CCcCCC
Confidence 44443332 2233456679999999999999985 668884
No 111
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.92 E-value=2.2 Score=47.11 Aligned_cols=47 Identities=43% Similarity=0.903 Sum_probs=38.2
Q ss_pred ccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCC
Q 010475 451 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSL 505 (509)
Q Consensus 451 ~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~ 505 (509)
...|.||+.++ ..+..+|. |..|+.+|+.- +.+||+|+..+...+..
T Consensus 479 ~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~-~~~~pl~~~~~~~~~~~ 525 (543)
T KOG0802|consen 479 NDVCAICYQEM----SARITPCS---HALCLRKWLYV-QEVCPLCHTYMKEDDFL 525 (543)
T ss_pred cCcchHHHHHH----Hhcccccc---chhHHHhhhhh-ccccCCCchhhhccccc
Confidence 45799999998 34677788 99999999984 78999999877666544
No 112
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=68.57 E-value=2.5 Score=43.65 Aligned_cols=47 Identities=34% Similarity=0.628 Sum_probs=34.1
Q ss_pred cccceecccccCCCceE-EeC---CCCccchHHHHHHHhh--------cCCCCCCcccC
Q 010475 452 AQCYICLLEYEEGDSVR-VLP---CHHEFHKTCVDKWLKE--------IHRVCPLCRGD 498 (509)
Q Consensus 452 eeCpICLEeFeegD~Vr-vLP---CgHvFH~eCIdkWLke--------~~~TCPLCRa~ 498 (509)
.+|-||.+++.+.+..+ .-| |.-++|..|+..-+.. ....||.|++-
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~ 241 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKF 241 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhce
Confidence 58999999995544433 223 9999999999995432 13479999874
No 113
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=68.38 E-value=9.5 Score=44.45 Aligned_cols=41 Identities=24% Similarity=0.499 Sum_probs=28.9
Q ss_pred cccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCC
Q 010475 452 AQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPL 494 (509)
Q Consensus 452 eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPL 494 (509)
..|.+|-..+.. ..+-.--|+|.-|..|+.+|+.. +..||.
T Consensus 780 ~~CtVC~~vi~G-~~~~c~~C~H~gH~sh~~sw~~~-~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRG-VDVWCQVCGHGGHDSHLKSWFFK-ASPCAK 820 (839)
T ss_pred cCceeecceeee-eEeecccccccccHHHHHHHHhc-CCCCcc
Confidence 468888665432 22222239999999999999985 677766
No 114
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.33 E-value=3.3 Score=44.64 Aligned_cols=37 Identities=30% Similarity=0.610 Sum_probs=31.0
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhh
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE 487 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke 487 (509)
....+|-||.+.+.. .+..+.|+|.||..|+...|..
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 344689999999866 5677889999999999999974
No 115
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=66.30 E-value=5.5 Score=42.47 Aligned_cols=47 Identities=23% Similarity=0.506 Sum_probs=33.3
Q ss_pred CccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCccc
Q 010475 450 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRG 497 (509)
Q Consensus 450 e~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa 497 (509)
....|..|.++.......+.-.|.++||.+|= .++.+.=..||-|-.
T Consensus 329 ~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCD-v~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSGRYRCESCKNVFCLDCD-VFIHESLHNCPGCEH 375 (378)
T ss_pred CCcceeeeccccCCCCcEEchhccceeeccch-HHHHhhhhcCCCcCC
Confidence 34459999888776656666669999999993 333332346999964
No 116
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=65.51 E-value=2.9 Score=42.12 Aligned_cols=43 Identities=26% Similarity=0.854 Sum_probs=35.3
Q ss_pred ccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcc
Q 010475 451 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCR 496 (509)
Q Consensus 451 ~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCR 496 (509)
...|.+|..-.-.+ +++-.|+-.||..|+.+.+++ ...||.|-
T Consensus 181 lk~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~-~~~cphc~ 223 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQR-RDICPHCG 223 (235)
T ss_pred HHHHhHhHHHhhee--eccCcccchhhhHHHHHHhcc-cCcCCchh
Confidence 45799998875444 556678889999999999997 88999993
No 117
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=61.85 E-value=3 Score=47.13 Aligned_cols=41 Identities=29% Similarity=0.751 Sum_probs=26.3
Q ss_pred ccccceeccc-----ccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCc
Q 010475 451 VAQCYICLLE-----YEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLC 495 (509)
Q Consensus 451 ~eeCpICLEe-----FeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLC 495 (509)
...|.||... |+.....++..|+++||..|+.. . ..-||-|
T Consensus 511 gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~-s~~CPrC 556 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---K-SPCCPRC 556 (580)
T ss_pred eeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---c-CCCCCch
Confidence 3457777332 33222345666999999999654 2 4459999
No 118
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=56.29 E-value=3.8 Score=32.60 Aligned_cols=33 Identities=21% Similarity=0.603 Sum_probs=21.9
Q ss_pred EeCCC-CccchHHHHHHHhhcCCCCCCcccCcCCC
Q 010475 469 VLPCH-HEFHKTCVDKWLKEIHRVCPLCRGDICKP 502 (509)
Q Consensus 469 vLPCg-HvFH~eCIdkWLke~~~TCPLCRa~V~e~ 502 (509)
...|. |..|..|+...|.. ...||+|..+++..
T Consensus 15 Li~C~dHYLCl~CLt~ml~~-s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLSR-SDRCPICGKPLPTK 48 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-SS-SSEETTTTEE----
T ss_pred eeeecchhHHHHHHHHHhcc-ccCCCcccCcCccc
Confidence 34474 99999999999985 77899999988653
No 119
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=52.94 E-value=12 Score=29.13 Aligned_cols=44 Identities=20% Similarity=0.440 Sum_probs=20.4
Q ss_pred cccceecccccCCCceEEeCCCCccchHHHHHHHhh----cCCCCCCcccC
Q 010475 452 AQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE----IHRVCPLCRGD 498 (509)
Q Consensus 452 eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke----~~~TCPLCRa~ 498 (509)
..|+|....+..+ ++-..|.|.-|.+ +..||.. ..-.||+|.++
T Consensus 3 L~CPls~~~i~~P--~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIP--VRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSE--EEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeC--ccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 3688888887664 5666699985443 4456642 23369999763
No 120
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.36 E-value=7.7 Score=41.55 Aligned_cols=44 Identities=25% Similarity=0.581 Sum_probs=30.5
Q ss_pred ccccceecccccCCCceEEe--CCCCccchHHHHHHHhhcCCCCCCc
Q 010475 451 VAQCYICLLEYEEGDSVRVL--PCHHEFHKTCVDKWLKEIHRVCPLC 495 (509)
Q Consensus 451 ~eeCpICLEeFeegD~VrvL--PCgHvFH~eCIdkWLke~~~TCPLC 495 (509)
-.+|++|.--++.......+ .|+|.||..|...|... ...|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~-~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTH-NGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhC-CccccCc
Confidence 35799888777655432222 29999999999999873 5556444
No 121
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=47.23 E-value=12 Score=36.50 Aligned_cols=39 Identities=36% Similarity=0.858 Sum_probs=26.7
Q ss_pred cccceeccc-----ccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcc
Q 010475 452 AQCYICLLE-----YEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCR 496 (509)
Q Consensus 452 eeCpICLEe-----FeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCR 496 (509)
..|-||-.+ |+....++.-.|+-+||..|..+ ..||-|-
T Consensus 153 fiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~------~~CpkC~ 196 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK------KSCPKCA 196 (202)
T ss_pred CCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC------CCCCCcH
Confidence 468888753 33433344445999999999652 4699994
No 122
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=47.06 E-value=18 Score=38.64 Aligned_cols=46 Identities=17% Similarity=0.328 Sum_probs=37.0
Q ss_pred CccccceecccccCCCceEEeCCCCccchHHHHHHHhhc--CCCCCCc
Q 010475 450 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI--HRVCPLC 495 (509)
Q Consensus 450 e~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~--~~TCPLC 495 (509)
....||+--+.-.+......|.|||+.-.+-+...-+.+ ...||.|
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 345799977777777778899999999999999877643 3569999
No 123
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=45.11 E-value=8.3 Score=28.85 Aligned_cols=44 Identities=30% Similarity=0.651 Sum_probs=30.3
Q ss_pred cceecccccCCCceEEeCCCCccchHHHHHHHhh-----cCCCCCCccc
Q 010475 454 CYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE-----IHRVCPLCRG 497 (509)
Q Consensus 454 CpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke-----~~~TCPLCRa 497 (509)
|.||......++.+..-.|+..||..|+..=+.. ..-.||.|+.
T Consensus 2 C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 2 CPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp BTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred CcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 8899885444444555569999999998765531 1457888853
No 124
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.07 E-value=18 Score=37.64 Aligned_cols=53 Identities=17% Similarity=0.265 Sum_probs=38.7
Q ss_pred ccccceecccccCCCc-eEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCCC
Q 010475 451 VAQCYICLLEYEEGDS-VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP 506 (509)
Q Consensus 451 ~eeCpICLEeFeegD~-VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~P 506 (509)
...|+|=--+|..... +...+|||+|-..-+.+.= ..+|++|-+.+...+.++
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvIv 164 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVIV 164 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeEe
Confidence 4579987777654433 5566799999988766532 468999999988887663
No 125
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=44.47 E-value=14 Score=38.79 Aligned_cols=35 Identities=26% Similarity=0.520 Sum_probs=28.8
Q ss_pred eEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCC
Q 010475 467 VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK 501 (509)
Q Consensus 467 VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e 501 (509)
+.+=||+|..|..|++..+..+...||.|-..+..
T Consensus 18 ~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 18 LMINECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred eeeccccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 34449999999999999998778899999765544
No 126
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=44.24 E-value=4.6 Score=42.01 Aligned_cols=42 Identities=26% Similarity=0.435 Sum_probs=32.9
Q ss_pred cccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCC
Q 010475 452 AQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCP 493 (509)
Q Consensus 452 eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCP 493 (509)
..|.||+++|..+.....+-|..+||..|+-.|+++....+|
T Consensus 215 rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTGAASTE 256 (288)
T ss_pred eecHHHHHHHhcccccchhhcccccccccccccccccccccc
Confidence 489999999987655666667669999999999986444443
No 127
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.72 E-value=10 Score=44.38 Aligned_cols=43 Identities=28% Similarity=0.524 Sum_probs=32.1
Q ss_pred cccceecccccCC----CceEEeCCCCccchHHHHHHHhhcCCCCCCcc
Q 010475 452 AQCYICLLEYEEG----DSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCR 496 (509)
Q Consensus 452 eeCpICLEeFeeg----D~VrvLPCgHvFH~eCIdkWLke~~~TCPLCR 496 (509)
..|.-|++..-.. +.+.++.|+|.||..|+..-..+ ..|-.|-
T Consensus 785 ~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~--~~~~~~~ 831 (846)
T KOG2066|consen 785 ERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLR--NACNIES 831 (846)
T ss_pred hhhhhhcccccccCcccceeeEEEccchhhhcccccHHHh--cccChhh
Confidence 4699999886522 45889999999999999877754 2265553
No 128
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=43.19 E-value=21 Score=31.07 Aligned_cols=52 Identities=23% Similarity=0.421 Sum_probs=24.3
Q ss_pred CccccceecccccCCC---c-eEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCC
Q 010475 450 EVAQCYICLLEYEEGD---S-VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK 501 (509)
Q Consensus 450 e~eeCpICLEeFeegD---~-VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e 501 (509)
....|-||=++..... . +....|+--.|+.|..-=.++.+..||.|+.....
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 3457999999875332 2 44556888899999998888888899999987643
No 129
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=41.60 E-value=9.3 Score=44.25 Aligned_cols=51 Identities=29% Similarity=0.601 Sum_probs=32.3
Q ss_pred cccceecccccCCCc--eEEeC-----CCCccchHHHHHH--Hhh-------cCCCCCCcccCcCCC
Q 010475 452 AQCYICLLEYEEGDS--VRVLP-----CHHEFHKTCVDKW--LKE-------IHRVCPLCRGDICKP 502 (509)
Q Consensus 452 eeCpICLEeFeegD~--VrvLP-----CgHvFH~eCIdkW--Lke-------~~~TCPLCRa~V~e~ 502 (509)
..|+||-|+=.+.+. -.+|. |.-.||..|.+.- |-+ .-..|-.|+..+.+.
T Consensus 118 KtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~HfsKl 184 (900)
T KOG0956|consen 118 KTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFSKL 184 (900)
T ss_pred ceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHHHh
Confidence 479999988444332 12333 7889999998762 211 134699998766443
No 130
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.15 E-value=27 Score=32.01 Aligned_cols=44 Identities=18% Similarity=0.361 Sum_probs=30.8
Q ss_pred cccceecccccCCCc-----------eEEeCCCCccchHHHHHHHhhcCCCCCCcc
Q 010475 452 AQCYICLLEYEEGDS-----------VRVLPCHHEFHKTCVDKWLKEIHRVCPLCR 496 (509)
Q Consensus 452 eeCpICLEeFeegD~-----------VrvLPCgHvFH~eCIdkWLke~~~TCPLCR 496 (509)
..|.-|+..|..... -..-.|++.||.+|=.-|-.. =..||-|-
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~-Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHES-LHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhh-ccCCcCCC
Confidence 469999999865310 123349999999996666554 44699995
No 131
>PLN02189 cellulose synthase
Probab=40.46 E-value=28 Score=42.11 Aligned_cols=51 Identities=25% Similarity=0.423 Sum_probs=38.4
Q ss_pred CccccceecccccC---CCc-eEEeCCCCccchHHHHHHHhhcCCCCCCcccCcC
Q 010475 450 EVAQCYICLLEYEE---GDS-VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC 500 (509)
Q Consensus 450 e~eeCpICLEeFee---gD~-VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~ 500 (509)
....|.||-+++.. |+. |.+--|+--.|..|.+-=.++++..||.|+....
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 34579999999753 332 4444588889999997766677889999998775
No 132
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=38.52 E-value=17 Score=37.03 Aligned_cols=39 Identities=21% Similarity=0.539 Sum_probs=28.6
Q ss_pred ccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCC
Q 010475 453 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVC 492 (509)
Q Consensus 453 eCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TC 492 (509)
.|..|..--. ++....+.|.|+||..|...-....-..|
T Consensus 5 hCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~~~~~C~lC 43 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTACRHVFCEPCLKASSPDVCPLC 43 (233)
T ss_pred EeccccccCC-CCceeeeechhhhhhhhcccCCccccccc
Confidence 4777766544 67788888999999999887665335555
No 133
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.41 E-value=6.5 Score=39.50 Aligned_cols=47 Identities=34% Similarity=0.605 Sum_probs=37.9
Q ss_pred cccceecccccCCC---ceEEeC--------CCCccchHHHHHHHhhcCCCCCCcccC
Q 010475 452 AQCYICLLEYEEGD---SVRVLP--------CHHEFHKTCVDKWLKEIHRVCPLCRGD 498 (509)
Q Consensus 452 eeCpICLEeFeegD---~VrvLP--------CgHvFH~eCIdkWLke~~~TCPLCRa~ 498 (509)
..|.||...|...+ ...++. |+|..|..|+..-+......||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 57999999998432 255667 999999999999988645689999864
No 134
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=37.25 E-value=22 Score=37.85 Aligned_cols=48 Identities=27% Similarity=0.532 Sum_probs=35.3
Q ss_pred cccceecccccCCCceEEeC--CCCccchHHHHHHHhhcCCCCCCcccCcCC
Q 010475 452 AQCYICLLEYEEGDSVRVLP--CHHEFHKTCVDKWLKEIHRVCPLCRGDICK 501 (509)
Q Consensus 452 eeCpICLEeFeegD~VrvLP--CgHvFH~eCIdkWLke~~~TCPLCRa~V~e 501 (509)
..|+||-+.....+. ..|| |++..|..|...-.. ++..||.||.+...
T Consensus 250 ~s~p~~~~~~~~~d~-~~lP~~~~~~~~l~~~~t~~~-~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDS-NFLPCPCGFRLCLFCHKTISD-GDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCccccccc-ccccccccccchhhhhhcccc-cCCCCCccCCcccc
Confidence 579999998754433 2344 788888888887776 48899999976543
No 135
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=37.07 E-value=11 Score=40.99 Aligned_cols=46 Identities=28% Similarity=0.395 Sum_probs=0.0
Q ss_pred ccceecccc-----------cCCCceEEeCCCCccchHHHHHHHhhc--CCCCCCcccC
Q 010475 453 QCYICLLEY-----------EEGDSVRVLPCHHEFHKTCVDKWLKEI--HRVCPLCRGD 498 (509)
Q Consensus 453 eCpICLEeF-----------eegD~VrvLPCgHvFH~eCIdkWLke~--~~TCPLCRa~ 498 (509)
+|+|=|..+ .+....+.|.|||++..+=.-.--.+. ..+||+||..
T Consensus 279 QCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 279 QCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYHNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp -----------------------------------------------------------
T ss_pred CCCcCCCccccccccccccccccCceeeccccceeeecccccccccccccccCCCcccc
No 136
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=35.11 E-value=26 Score=27.94 Aligned_cols=42 Identities=31% Similarity=0.793 Sum_probs=20.6
Q ss_pred cceecccccCCC------ceEEeC-CCCccchHHHHHHHhhcCCCCCCcc
Q 010475 454 CYICLLEYEEGD------SVRVLP-CHHEFHKTCVDKWLKEIHRVCPLCR 496 (509)
Q Consensus 454 CpICLEeFeegD------~VrvLP-CgHvFH~eCIdkWLke~~~TCPLCR 496 (509)
|.-|+..|..+. ..-.-| |++.|+.+| +.++-+.=..||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 666777776642 222333 999999999 333333234699883
No 137
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.74 E-value=27 Score=36.32 Aligned_cols=33 Identities=12% Similarity=0.260 Sum_probs=28.6
Q ss_pred ccccceecccccCCCceEEeCCCCccchHHHHHHHh
Q 010475 451 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLK 486 (509)
Q Consensus 451 ~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLk 486 (509)
-..|..||..+..+ ++.|=||+|+.+||..++.
T Consensus 43 FdcCsLtLqPc~dP---vit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 43 FDCCSLTLQPCRDP---VITPDGYLFDREAILEYIL 75 (303)
T ss_pred cceeeeecccccCC---ccCCCCeeeeHHHHHHHHH
Confidence 35799999999886 7888999999999999874
No 138
>PLN02436 cellulose synthase A
Probab=32.51 E-value=44 Score=40.68 Aligned_cols=50 Identities=26% Similarity=0.529 Sum_probs=38.3
Q ss_pred ccccceeccccc---CCCc-eEEeCCCCccchHHHHHHHhhcCCCCCCcccCcC
Q 010475 451 VAQCYICLLEYE---EGDS-VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC 500 (509)
Q Consensus 451 ~eeCpICLEeFe---egD~-VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~ 500 (509)
...|-||=++.. +|+. |.+--|+--.|..|.+-=.++.+..||.|+....
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 457999999974 3333 4555588889999997766677889999998775
No 139
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=32.01 E-value=44 Score=22.67 Aligned_cols=36 Identities=22% Similarity=0.476 Sum_probs=23.1
Q ss_pred cceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCc
Q 010475 454 CYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI 499 (509)
Q Consensus 454 CpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V 499 (509)
|..|-+.+...+.+ ...=+..||..| ..|..|...|
T Consensus 2 C~~C~~~i~~~~~~-~~~~~~~~H~~C---------f~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELV-LRALGKVWHPEC---------FKCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEE-EEeCCccccccC---------CCCcccCCcC
Confidence 77888887665232 222467888865 4677777655
No 140
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=31.39 E-value=47 Score=40.31 Aligned_cols=51 Identities=22% Similarity=0.392 Sum_probs=39.1
Q ss_pred CccccceecccccCC---Cc-eEEeCCCCccchHHHHHHHhhcCCCCCCcccCcC
Q 010475 450 EVAQCYICLLEYEEG---DS-VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC 500 (509)
Q Consensus 450 e~eeCpICLEeFeeg---D~-VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~ 500 (509)
....|-||=++.... +. |.+--|+--.|..|.+-=.++++..||.|+....
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 456799999987533 32 5555688889999997666677889999998775
No 141
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=29.28 E-value=64 Score=26.56 Aligned_cols=45 Identities=24% Similarity=0.648 Sum_probs=31.3
Q ss_pred ccceecccccCCCceEEeCCC--CccchHHHHHHHhhcCCCCCCcccCcCC
Q 010475 453 QCYICLLEYEEGDSVRVLPCH--HEFHKTCVDKWLKEIHRVCPLCRGDICK 501 (509)
Q Consensus 453 eCpICLEeFeegD~VrvLPCg--HvFH~eCIdkWLke~~~TCPLCRa~V~e 501 (509)
.|-.|-.++..+..... -|. ..||.+|.+..|. ..||.|-.++..
T Consensus 7 nCE~C~~dLp~~s~~A~-ICSfECTFC~~C~e~~l~---~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAY-ICSFECTFCADCAETMLN---GVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCCCcce-EEeEeCcccHHHHHHHhc---CcCcCCCCcccc
Confidence 47777777766542111 143 4699999999884 589999887754
No 142
>PLN02195 cellulose synthase A
Probab=29.14 E-value=65 Score=38.94 Aligned_cols=51 Identities=25% Similarity=0.439 Sum_probs=39.0
Q ss_pred ccccceecccccCCC---c-eEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCC
Q 010475 451 VAQCYICLLEYEEGD---S-VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK 501 (509)
Q Consensus 451 ~eeCpICLEeFeegD---~-VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e 501 (509)
...|.||=++..... . |.+--|+--.|+.|.+==-++++..||.|+....+
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDA 60 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCcccc
Confidence 347999999875432 2 55666999999999966566778899999988763
No 143
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=27.67 E-value=36 Score=28.86 Aligned_cols=13 Identities=38% Similarity=1.168 Sum_probs=9.5
Q ss_pred ccchHHHHHHHhh
Q 010475 475 EFHKTCVDKWLKE 487 (509)
Q Consensus 475 vFH~eCIdkWLke 487 (509)
-||+.|+.+|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999974
No 144
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=26.57 E-value=28 Score=27.69 Aligned_cols=36 Identities=17% Similarity=0.392 Sum_probs=18.0
Q ss_pred CccccceecccccCCCce-EEeCCCCccchHHHHHHH
Q 010475 450 EVAQCYICLLEYEEGDSV-RVLPCHHEFHKTCVDKWL 485 (509)
Q Consensus 450 e~eeCpICLEeFeegD~V-rvLPCgHvFH~eCIdkWL 485 (509)
+...|.+|...|..-..- -.-.||++||..|....+
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 345799999999654222 222399999999987655
No 145
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=26.30 E-value=68 Score=39.12 Aligned_cols=51 Identities=20% Similarity=0.375 Sum_probs=38.5
Q ss_pred CccccceecccccCC---Cc-eEEeCCCCccchHHHHHHHhhcCCCCCCcccCcC
Q 010475 450 EVAQCYICLLEYEEG---DS-VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC 500 (509)
Q Consensus 450 e~eeCpICLEeFeeg---D~-VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~ 500 (509)
....|-||=++.... +. |.+--|+--.|..|.+==.++++..||.|+....
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 345799999997533 22 5555688889999996655667889999998765
No 146
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=26.27 E-value=5.3 Score=33.83 Aligned_cols=39 Identities=26% Similarity=0.526 Sum_probs=20.9
Q ss_pred cccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCc
Q 010475 452 AQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI 499 (509)
Q Consensus 452 eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V 499 (509)
..||+|..+++... +|.+|..|-....+ ...||-|..++
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~~~~--~a~CPdC~~~L 40 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKDYKK--EAFCPDCGQPL 40 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--EEEE--EEE-TTT-SB-
T ss_pred CcCCCCCCccEEeC-------CEEECcccccccee--cccCCCcccHH
Confidence 36999988865432 66677777665443 46799988766
No 147
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=26.07 E-value=29 Score=24.01 Aligned_cols=22 Identities=32% Similarity=0.670 Sum_probs=10.6
Q ss_pred ccceecccccCCCceEEeC-CCCcc
Q 010475 453 QCYICLLEYEEGDSVRVLP-CHHEF 476 (509)
Q Consensus 453 eCpICLEeFeegD~VrvLP-CgHvF 476 (509)
.||-|...+... ...-| |||.|
T Consensus 2 ~CP~C~~~V~~~--~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPES--AKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhh--cCcCCCCCCCC
Confidence 466666554332 22333 66655
No 148
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=25.72 E-value=27 Score=37.47 Aligned_cols=31 Identities=29% Similarity=0.549 Sum_probs=19.6
Q ss_pred CceEEeCCCCccchHHHHHHHhh-----cCCCCCCcccC
Q 010475 465 DSVRVLPCHHEFHKTCVDKWLKE-----IHRVCPLCRGD 498 (509)
Q Consensus 465 D~VrvLPCgHvFH~eCIdkWLke-----~~~TCPLCRa~ 498 (509)
+..+.|.|||+-..+ .|=.+ ....||+||..
T Consensus 315 QP~vYl~CGHV~G~H---~WG~~e~~g~~~r~CPmC~~~ 350 (429)
T KOG3842|consen 315 QPWVYLNCGHVHGYH---NWGVRENTGQRERECPMCRVV 350 (429)
T ss_pred CCeEEEecccccccc---ccccccccCcccCcCCeeeee
Confidence 346788999873332 36542 14579999863
No 149
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.86 E-value=25 Score=38.11 Aligned_cols=37 Identities=22% Similarity=0.532 Sum_probs=28.3
Q ss_pred ccccceecccccCCCc-----eEEeCCCCccchHHHHHHHhh
Q 010475 451 VAQCYICLLEYEEGDS-----VRVLPCHHEFHKTCVDKWLKE 487 (509)
Q Consensus 451 ~eeCpICLEeFeegD~-----VrvLPCgHvFH~eCIdkWLke 487 (509)
...||.|....+.... ....+|.|.||..|+..|...
T Consensus 226 tk~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 226 TKECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDH 267 (444)
T ss_pred CccCCCcccchhccCCccccccccCCcCCeeceeeecccccc
Confidence 3469999999887653 122349999999999999874
No 150
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=22.74 E-value=38 Score=24.80 Aligned_cols=25 Identities=40% Similarity=0.743 Sum_probs=16.7
Q ss_pred ccceecccccCCCc--------eEEeCCCCccc
Q 010475 453 QCYICLLEYEEGDS--------VRVLPCHHEFH 477 (509)
Q Consensus 453 eCpICLEeFeegD~--------VrvLPCgHvFH 477 (509)
+|+=|...|..++. +..-.|+|+|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 58888888875553 33344888874
No 151
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=22.63 E-value=74 Score=34.32 Aligned_cols=51 Identities=24% Similarity=0.598 Sum_probs=34.5
Q ss_pred ccccceeccccc---------------CCC-ceEEeCCCCccchHHHHHHHhh--------cCCCCCCcccCcCC
Q 010475 451 VAQCYICLLEYE---------------EGD-SVRVLPCHHEFHKTCVDKWLKE--------IHRVCPLCRGDICK 501 (509)
Q Consensus 451 ~eeCpICLEeFe---------------egD-~VrvLPCgHvFH~eCIdkWLke--------~~~TCPLCRa~V~e 501 (509)
..+|++|+..=. .|- .-.--||||+--..-+.-|-+- -+..||.|-+.+..
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 568999997621 110 1124579999888888889862 14579999877643
No 152
>PLN02400 cellulose synthase
Probab=22.20 E-value=72 Score=38.96 Aligned_cols=51 Identities=22% Similarity=0.389 Sum_probs=38.3
Q ss_pred CccccceecccccCC---Cc-eEEeCCCCccchHHHHHHHhhcCCCCCCcccCcC
Q 010475 450 EVAQCYICLLEYEEG---DS-VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC 500 (509)
Q Consensus 450 e~eeCpICLEeFeeg---D~-VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~ 500 (509)
....|-||=++.... +. |.+--|+--.|+.|.+-=-++++..||.|+....
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 345799999997533 32 5666688889999986555567789999998775
No 153
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=22.07 E-value=47 Score=24.29 Aligned_cols=25 Identities=32% Similarity=0.651 Sum_probs=16.7
Q ss_pred ccceecccccCCCc--------eEEeCCCCccc
Q 010475 453 QCYICLLEYEEGDS--------VRVLPCHHEFH 477 (509)
Q Consensus 453 eCpICLEeFeegD~--------VrvLPCgHvFH 477 (509)
+|+-|-..|..++. ++.-.|+|+|.
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 58888888865542 33334888875
No 154
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.73 E-value=54 Score=34.80 Aligned_cols=36 Identities=25% Similarity=0.438 Sum_probs=27.9
Q ss_pred ccccceecccccCCCceEEeC--CCCccchHHHHHHHhh
Q 010475 451 VAQCYICLLEYEEGDSVRVLP--CHHEFHKTCVDKWLKE 487 (509)
Q Consensus 451 ~eeCpICLEeFeegD~VrvLP--CgHvFH~eCIdkWLke 487 (509)
...|.+|.|.+++-+-| ..| =.|.||+.|-..-+|.
T Consensus 268 pLcCTLC~ERLEDTHFV-QCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFV-QCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred ceeehhhhhhhccCcee-ecCCCcccceecccCHHHHHh
Confidence 36799999999875433 333 4699999999999985
No 155
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=20.63 E-value=69 Score=27.61 Aligned_cols=31 Identities=32% Similarity=0.710 Sum_probs=22.3
Q ss_pred ccccceecccccCCCceEEeC--CCCccchHHHHH
Q 010475 451 VAQCYICLLEYEEGDSVRVLP--CHHEFHKTCVDK 483 (509)
Q Consensus 451 ~eeCpICLEeFeegD~VrvLP--CgHvFH~eCIdk 483 (509)
...|.||... .|..+..-. |...||..|...
T Consensus 55 ~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 55 KLKCSICGKS--GGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred CCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHH
Confidence 3579999988 443333333 888999999865
Done!