Query 010475
Match_columns 509
No_of_seqs 222 out of 1488
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 07:37:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010475.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010475hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.6 1.9E-16 6.5E-21 130.8 7.5 81 419-501 9-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 9.7E-16 3.3E-20 121.3 4.5 70 430-502 4-73 (75)
3 2ep4_A Ring finger protein 24; 99.5 2.7E-14 9.1E-19 112.3 6.2 57 449-506 13-69 (74)
4 2ect_A Ring finger protein 126 99.5 2.1E-14 7.2E-19 113.9 5.1 58 449-507 13-70 (78)
5 2kiz_A E3 ubiquitin-protein li 99.5 6.9E-14 2.4E-18 108.5 6.3 54 449-503 12-65 (69)
6 1iym_A EL5; ring-H2 finger, ub 99.4 3E-14 1E-18 105.9 3.5 51 449-500 3-54 (55)
7 1v87_A Deltex protein 2; ring- 99.4 1.8E-13 6.3E-18 115.6 5.7 54 451-504 25-97 (114)
8 3ng2_A RNF4, snurf, ring finge 99.4 2.1E-13 7.2E-18 105.6 4.2 57 449-506 8-68 (71)
9 2ecm_A Ring finger and CHY zin 99.4 3.8E-13 1.3E-17 99.7 4.8 50 450-500 4-54 (55)
10 2ea6_A Ring finger protein 4; 99.3 6.8E-13 2.3E-17 101.7 4.8 52 449-501 13-68 (69)
11 2ecl_A Ring-box protein 2; RNF 99.3 5E-13 1.7E-17 108.5 3.9 51 450-501 14-76 (81)
12 2xeu_A Ring finger protein 4; 99.3 3.7E-13 1.2E-17 101.9 2.5 55 451-506 3-61 (64)
13 3dpl_R Ring-box protein 1; ubi 99.3 1.6E-12 5.4E-17 112.1 5.9 51 449-500 35-100 (106)
14 2djb_A Polycomb group ring fin 99.3 2.9E-12 9.8E-17 100.8 6.1 56 449-508 13-69 (72)
15 2d8s_A Cellular modulator of i 99.2 5.8E-12 2E-16 103.6 5.8 56 449-505 13-74 (80)
16 2ct2_A Tripartite motif protei 99.2 6.9E-12 2.3E-16 100.6 6.0 55 449-503 13-70 (88)
17 1chc_A Equine herpes virus-1 r 99.2 4.2E-12 1.4E-16 98.0 4.3 49 450-501 4-52 (68)
18 2yur_A Retinoblastoma-binding 99.2 1.2E-11 4E-16 98.1 6.1 54 449-505 13-68 (74)
19 2ecy_A TNF receptor-associated 99.2 5.3E-12 1.8E-16 97.5 4.0 53 449-504 13-65 (66)
20 2ecn_A Ring finger protein 141 99.2 2.4E-12 8.2E-17 100.1 1.9 52 449-505 13-64 (70)
21 2d8t_A Dactylidin, ring finger 99.2 3.8E-12 1.3E-16 99.8 2.9 51 449-503 13-63 (71)
22 1t1h_A Gspef-atpub14, armadill 99.2 4.8E-12 1.7E-16 100.3 3.6 56 449-507 6-61 (78)
23 4a0k_B E3 ubiquitin-protein li 99.2 1.2E-12 3.9E-17 115.3 -0.2 67 433-500 29-111 (117)
24 2ysl_A Tripartite motif-contai 99.2 1.1E-11 3.8E-16 96.6 4.5 52 449-503 18-71 (73)
25 1g25_A CDK-activating kinase a 99.2 9.6E-12 3.3E-16 95.8 3.7 57 451-507 3-61 (65)
26 2ecw_A Tripartite motif-contai 99.2 1.7E-11 5.9E-16 97.0 5.3 56 449-507 17-77 (85)
27 2csy_A Zinc finger protein 183 99.2 1.3E-11 4.5E-16 98.8 4.6 48 449-500 13-60 (81)
28 2ecv_A Tripartite motif-contai 99.2 2.3E-11 8E-16 96.2 5.4 56 449-507 17-77 (85)
29 3lrq_A E3 ubiquitin-protein li 99.1 9.8E-12 3.4E-16 104.1 1.9 54 450-506 21-75 (100)
30 4ayc_A E3 ubiquitin-protein li 99.1 1.3E-11 4.4E-16 108.7 2.7 48 451-502 53-100 (138)
31 2egp_A Tripartite motif-contai 99.1 6.6E-12 2.2E-16 99.1 0.7 56 449-507 10-71 (79)
32 3fl2_A E3 ubiquitin-protein li 99.1 2.5E-11 8.6E-16 104.5 4.2 54 450-506 51-105 (124)
33 4ap4_A E3 ubiquitin ligase RNF 99.1 1.6E-11 5.4E-16 104.2 2.6 55 449-504 5-63 (133)
34 2y43_A E3 ubiquitin-protein li 99.1 1.9E-11 6.5E-16 101.3 1.9 54 450-507 21-75 (99)
35 3ztg_A E3 ubiquitin-protein li 99.1 7.1E-11 2.4E-15 96.2 5.1 51 449-502 11-63 (92)
36 2ysj_A Tripartite motif-contai 99.1 1E-10 3.4E-15 89.4 5.1 44 449-495 18-63 (63)
37 4ap4_A E3 ubiquitin ligase RNF 99.1 3.5E-11 1.2E-15 102.1 2.3 57 449-506 70-130 (133)
38 1jm7_A BRCA1, breast cancer ty 99.0 1E-10 3.5E-15 97.8 4.1 54 451-507 21-76 (112)
39 1rmd_A RAG1; V(D)J recombinati 99.0 5.9E-11 2E-15 100.9 2.4 53 451-506 23-75 (116)
40 2ecj_A Tripartite motif-contai 99.0 1.3E-10 4.3E-15 86.7 3.5 44 449-495 13-58 (58)
41 2ckl_A Polycomb group ring fin 99.0 1.5E-10 5.1E-15 97.5 3.8 50 449-502 13-63 (108)
42 3hct_A TNF receptor-associated 99.0 1.2E-10 4.1E-15 99.8 3.2 55 449-506 16-70 (118)
43 1z6u_A NP95-like ring finger p 99.0 1.9E-10 6.4E-15 103.7 4.6 49 451-502 78-126 (150)
44 2ckl_B Ubiquitin ligase protei 99.0 1.1E-10 3.8E-15 105.0 3.1 52 450-503 53-104 (165)
45 2ct0_A Non-SMC element 1 homol 99.0 2.6E-10 9E-15 93.3 4.5 49 449-500 13-63 (74)
46 3l11_A E3 ubiquitin-protein li 98.9 7.4E-11 2.5E-15 100.1 -0.1 49 450-501 14-62 (115)
47 2kr4_A Ubiquitin conjugation f 98.9 2.6E-10 8.9E-15 93.7 3.0 55 449-507 12-66 (85)
48 2kre_A Ubiquitin conjugation f 98.9 2.9E-10 1E-14 96.5 3.0 55 449-507 27-81 (100)
49 1wgm_A Ubiquitin conjugation f 98.9 4.2E-10 1.4E-14 95.2 3.2 55 449-507 20-75 (98)
50 2c2l_A CHIP, carboxy terminus 98.9 3.9E-10 1.3E-14 106.4 3.0 56 449-507 206-261 (281)
51 1e4u_A Transcriptional repress 98.9 8.3E-10 2.8E-14 90.2 3.8 55 449-504 9-65 (78)
52 3knv_A TNF receptor-associated 98.8 6.9E-10 2.3E-14 99.2 2.2 50 449-501 29-78 (141)
53 1jm7_B BARD1, BRCA1-associated 98.8 5E-10 1.7E-14 95.9 1.0 52 450-507 21-73 (117)
54 1bor_A Transcription factor PM 98.8 8.6E-10 2.9E-14 83.7 1.1 51 449-506 4-54 (56)
55 2yu4_A E3 SUMO-protein ligase 98.8 2.2E-09 7.4E-14 89.4 2.7 55 450-507 6-69 (94)
56 2vje_A E3 ubiquitin-protein li 98.8 3.6E-09 1.2E-13 82.7 3.5 48 449-500 6-56 (64)
57 3hcs_A TNF receptor-associated 98.7 3.2E-09 1.1E-13 95.7 3.0 55 449-506 16-70 (170)
58 2y1n_A E3 ubiquitin-protein li 98.7 4.5E-09 1.5E-13 108.8 4.5 50 451-503 332-381 (389)
59 2f42_A STIP1 homology and U-bo 98.7 6.5E-09 2.2E-13 97.5 2.9 55 450-507 105-159 (179)
60 2vje_B MDM4 protein; proto-onc 98.6 1.2E-08 4.1E-13 79.5 3.3 47 450-500 6-55 (63)
61 4ic3_A E3 ubiquitin-protein li 98.6 6.9E-09 2.4E-13 82.7 1.7 44 450-501 23-67 (74)
62 1vyx_A ORF K3, K3RING; zinc-bi 98.4 9.8E-08 3.3E-12 74.6 3.7 49 449-500 4-58 (60)
63 3k1l_B Fancl; UBC, ring, RWD, 98.4 2.8E-08 9.6E-13 102.2 0.5 52 449-500 306-372 (381)
64 1wim_A KIAA0161 protein; ring 98.4 9.3E-08 3.2E-12 78.8 2.9 49 450-498 4-61 (94)
65 2ecg_A Baculoviral IAP repeat- 98.4 7.1E-08 2.4E-12 76.8 1.8 44 451-502 25-69 (75)
66 2bay_A PRE-mRNA splicing facto 98.4 6.5E-08 2.2E-12 75.7 1.4 52 452-507 4-56 (61)
67 2ea5_A Cell growth regulator w 98.3 2.8E-07 9.7E-12 73.0 4.0 46 449-502 13-59 (68)
68 2yho_A E3 ubiquitin-protein li 98.3 1.4E-07 4.6E-12 76.7 1.3 43 451-501 18-61 (79)
69 3htk_C E3 SUMO-protein ligase 98.2 1.6E-07 5.5E-12 93.2 0.7 56 450-507 180-238 (267)
70 3t6p_A Baculoviral IAP repeat- 98.1 4.7E-07 1.6E-11 92.1 1.4 44 450-501 294-338 (345)
71 3vk6_A E3 ubiquitin-protein li 97.9 7.2E-06 2.4E-10 71.2 4.0 47 453-501 3-49 (101)
72 3nw0_A Non-structural maintena 97.4 0.00011 3.7E-09 71.3 4.1 50 450-501 179-229 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 92.9 0.037 1.3E-06 45.5 1.9 35 451-485 3-38 (101)
74 2lri_C Autoimmune regulator; Z 89.1 0.18 6.3E-06 40.0 2.3 47 450-499 11-60 (66)
75 2ko5_A Ring finger protein Z; 86.0 0.39 1.3E-05 41.5 2.6 52 449-505 26-77 (99)
76 3m62_A Ubiquitin conjugation f 85.4 0.35 1.2E-05 55.4 2.7 55 449-507 889-944 (968)
77 2k16_A Transcription initiatio 84.5 0.18 6.1E-06 40.1 -0.2 52 450-501 17-71 (75)
78 1we9_A PHD finger family prote 83.8 0.23 7.8E-06 38.3 0.2 50 449-498 4-58 (64)
79 3lqh_A Histone-lysine N-methyl 81.6 0.36 1.2E-05 45.3 0.6 48 452-499 3-64 (183)
80 2xb1_A Pygopus homolog 2, B-ce 77.2 0.32 1.1E-05 41.6 -1.1 49 452-500 4-63 (105)
81 2kgg_A Histone demethylase jar 71.0 1.3 4.5E-05 33.1 1.1 44 453-496 4-52 (52)
82 1f62_A Transcription factor WS 69.7 1.3 4.4E-05 32.6 0.8 45 453-497 2-49 (51)
83 2yt5_A Metal-response element- 69.5 0.73 2.5E-05 35.6 -0.7 52 449-500 4-63 (66)
84 1wem_A Death associated transc 67.7 1.3 4.5E-05 35.3 0.5 46 452-498 17-70 (76)
85 2ysm_A Myeloid/lymphoid or mix 67.3 1.1 3.7E-05 37.9 -0.1 48 449-496 5-55 (111)
86 1wep_A PHF8; structural genomi 66.3 5.1 0.00017 32.2 3.7 47 452-499 13-64 (79)
87 2l5u_A Chromodomain-helicase-D 66.2 1.9 6.5E-05 33.3 1.1 47 449-498 9-58 (61)
88 1weu_A Inhibitor of growth fam 64.9 2.4 8.2E-05 35.8 1.5 45 451-499 36-86 (91)
89 2vpb_A Hpygo1, pygopus homolog 64.5 4 0.00014 32.2 2.7 48 449-496 6-64 (65)
90 1wil_A KIAA1045 protein; ring 64.0 2.9 0.0001 35.5 1.9 32 449-484 13-47 (89)
91 3v43_A Histone acetyltransfera 63.1 5.8 0.0002 33.8 3.6 45 452-496 6-62 (112)
92 2ri7_A Nucleosome-remodeling f 62.9 1.7 5.7E-05 39.2 0.2 47 450-497 7-58 (174)
93 1mm2_A MI2-beta; PHD, zinc fin 62.8 1.2 4.1E-05 34.4 -0.6 50 449-501 7-59 (61)
94 2lv9_A Histone-lysine N-methyl 61.9 1.3 4.5E-05 37.3 -0.6 46 451-497 28-75 (98)
95 3u5n_A E3 ubiquitin-protein li 59.8 1.2 4.3E-05 41.5 -1.2 47 450-499 6-55 (207)
96 1weo_A Cellulose synthase, cat 58.8 12 0.00043 32.0 4.8 50 451-500 16-69 (93)
97 2yql_A PHD finger protein 21A; 57.0 0.89 3E-05 34.4 -2.3 46 449-497 7-55 (56)
98 1wev_A Riken cDNA 1110020M19; 56.9 1.3 4.6E-05 36.6 -1.4 53 451-503 16-77 (88)
99 1fp0_A KAP-1 corepressor; PHD 56.8 4.2 0.00014 34.2 1.7 48 449-499 23-73 (88)
100 1wew_A DNA-binding family prot 56.8 2.1 7.2E-05 34.5 -0.2 49 451-500 16-74 (78)
101 1xwh_A Autoimmune regulator; P 51.9 2.2 7.4E-05 33.4 -0.9 49 450-501 7-58 (66)
102 1wen_A Inhibitor of growth fam 51.6 4.8 0.00016 32.2 1.1 46 451-500 16-67 (71)
103 2puy_A PHD finger protein 21A; 50.1 0.87 3E-05 34.9 -3.3 48 450-500 4-54 (60)
104 2l43_A N-teminal domain from h 49.8 3.5 0.00012 34.2 0.0 54 450-503 24-80 (88)
105 2kwj_A Zinc finger protein DPF 49.0 4.5 0.00015 34.6 0.6 43 453-495 3-58 (114)
106 2e6s_A E3 ubiquitin-protein li 46.7 2.9 0.0001 34.0 -0.9 45 453-497 28-76 (77)
107 2lbm_A Transcriptional regulat 46.7 15 0.00052 33.3 3.7 45 450-497 62-116 (142)
108 3mpx_A FYVE, rhogef and PH dom 46.1 4.3 0.00015 40.8 0.0 51 450-500 374-431 (434)
109 3v43_A Histone acetyltransfera 44.5 5 0.00017 34.2 0.2 45 453-497 63-111 (112)
110 2e6r_A Jumonji/ARID domain-con 43.1 1.8 6.2E-05 36.2 -2.7 50 449-498 14-66 (92)
111 3ask_A E3 ubiquitin-protein li 43.1 3.7 0.00013 40.0 -1.0 46 453-498 176-225 (226)
112 3i2d_A E3 SUMO-protein ligase 42.7 15 0.0005 38.2 3.3 50 452-503 250-302 (371)
113 1zbd_B Rabphilin-3A; G protein 40.1 10 0.00036 33.8 1.6 34 449-482 53-88 (134)
114 4fo9_A E3 SUMO-protein ligase 39.7 18 0.00061 37.4 3.4 50 452-503 216-268 (360)
115 3shb_A E3 ubiquitin-protein li 38.6 3.2 0.00011 33.9 -1.9 46 453-498 28-77 (77)
116 3asl_A E3 ubiquitin-protein li 38.4 4.2 0.00014 32.3 -1.1 46 453-498 20-69 (70)
117 2cs3_A Protein C14ORF4, MY039 36.0 59 0.002 27.6 5.4 36 451-487 15-52 (93)
118 3ql9_A Transcriptional regulat 34.8 25 0.00084 31.5 3.1 45 450-497 56-110 (129)
119 3kv5_D JMJC domain-containing 33.4 8 0.00027 41.1 -0.3 44 454-497 39-87 (488)
120 3c6w_A P28ING5, inhibitor of g 32.2 5.4 0.00018 30.8 -1.4 42 452-497 10-57 (59)
121 2vnf_A ING 4, P29ING4, inhibit 31.4 5.4 0.00019 30.7 -1.5 42 452-497 11-58 (60)
122 3t7l_A Zinc finger FYVE domain 31.4 24 0.00081 29.1 2.3 50 450-499 19-74 (90)
123 1z60_A TFIIH basal transcripti 31.1 15 0.0005 28.9 0.9 43 452-495 16-58 (59)
124 1joc_A EEA1, early endosomal a 30.9 23 0.0008 30.9 2.3 34 451-484 69-103 (125)
125 2ku3_A Bromodomain-containing 30.1 37 0.0013 27.1 3.1 50 449-498 14-66 (71)
126 3kqi_A GRC5, PHD finger protei 29.4 13 0.00044 29.5 0.3 46 453-498 11-61 (75)
127 4gne_A Histone-lysine N-methyl 29.3 19 0.00066 31.0 1.4 50 449-503 13-67 (107)
128 1z2q_A LM5-1; membrane protein 29.2 29 0.00099 28.1 2.4 54 449-502 19-80 (84)
129 2yw8_A RUN and FYVE domain-con 28.9 27 0.00093 28.1 2.2 51 450-500 18-74 (82)
130 1wfk_A Zinc finger, FYVE domai 28.3 28 0.00096 28.7 2.2 51 449-499 7-64 (88)
131 2ysm_A Myeloid/lymphoid or mix 28.1 7.4 0.00025 32.8 -1.4 47 453-499 56-105 (111)
132 1x4u_A Zinc finger, FYVE domai 27.3 30 0.001 27.9 2.2 35 449-483 12-47 (84)
133 2cu8_A Cysteine-rich protein 2 26.8 32 0.0011 26.3 2.2 39 452-501 10-48 (76)
134 1dvp_A HRS, hepatocyte growth 26.3 25 0.00086 32.9 1.7 34 451-484 161-195 (220)
135 1y02_A CARP2, FYVE-ring finger 26.3 6.7 0.00023 34.6 -2.0 46 452-498 20-66 (120)
136 3o7a_A PHD finger protein 13 v 25.9 6.3 0.00022 29.3 -2.0 42 456-497 8-51 (52)
137 2kwj_A Zinc finger protein DPF 25.1 3.2 0.00011 35.6 -4.3 49 453-501 60-111 (114)
138 1iml_A CRIP, cysteine rich int 25.1 26 0.00088 26.8 1.3 43 450-497 26-69 (76)
139 3zyq_A Hepatocyte growth facto 25.0 28 0.00095 33.0 1.8 50 451-500 164-221 (226)
140 2o35_A Hypothetical protein DU 24.5 28 0.00097 30.4 1.6 12 476-487 43-54 (105)
141 3o70_A PHD finger protein 13; 23.4 24 0.00081 27.8 0.8 48 449-497 17-66 (68)
142 3fyb_A Protein of unknown func 23.2 31 0.001 30.1 1.5 12 476-487 42-53 (104)
143 2g6q_A Inhibitor of growth pro 23.0 10 0.00034 29.6 -1.4 42 452-497 12-59 (62)
144 3kv4_A PHD finger protein 8; e 22.8 17 0.00059 38.3 -0.1 47 452-498 5-56 (447)
145 1vfy_A Phosphatidylinositol-3- 22.7 44 0.0015 26.3 2.3 33 452-484 12-45 (73)
146 1wee_A PHD finger family prote 22.3 25 0.00085 27.6 0.8 47 451-498 16-66 (72)
147 2dj7_A Actin-binding LIM prote 21.6 41 0.0014 26.4 1.9 38 452-500 16-53 (80)
148 2zet_C Melanophilin; complex, 20.5 38 0.0013 30.8 1.7 32 450-481 67-100 (153)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.65 E-value=1.9e-16 Score=130.79 Aligned_cols=81 Identities=37% Similarity=0.728 Sum_probs=69.0
Q ss_pred CCCCCCCCCChHHHhcCCceeeecccccccCCccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccC
Q 010475 419 MSSIGSIPAPNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGD 498 (509)
Q Consensus 419 ~SSigp~PApkevIkSLP~~~~skssk~~~ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~ 498 (509)
.......++.++.|+.||...+....... .+...|+||++.|..++.++.|||+|.||..||.+||+. +.+||+||+.
T Consensus 9 ~~~~~~~~~s~~~i~~lp~~~~~~~~~~~-~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~ 86 (91)
T 2l0b_A 9 SHMVANPPASKESIDALPEILVTEDHGAV-GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCM 86 (91)
T ss_dssp CCSSCCCCCCHHHHHTSCEEECCTTCSSS-SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCB
T ss_pred CCCcCCCCCCHHHHHhCCCeeeccccccc-CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCcc
Confidence 34566788999999999999887654322 456789999999999988999999999999999999986 7899999998
Q ss_pred cCC
Q 010475 499 ICK 501 (509)
Q Consensus 499 V~e 501 (509)
+..
T Consensus 87 ~~~ 89 (91)
T 2l0b_A 87 FPP 89 (91)
T ss_dssp SSC
T ss_pred CCC
Confidence 864
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=9.7e-16 Score=121.27 Aligned_cols=70 Identities=40% Similarity=0.922 Sum_probs=58.2
Q ss_pred HHHhcCCceeeecccccccCCccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCC
Q 010475 430 EVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKP 502 (509)
Q Consensus 430 evIkSLP~~~~skssk~~~ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ 502 (509)
+.++.||...+..... ..+..+|+||++.|..++.++.|||+|.||..||.+||+. +.+||+||+++...
T Consensus 4 ~~i~~lp~~~~~~~~~--~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 4 GSSGQLPSYRFNPNNH--QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGPS 73 (75)
T ss_dssp CCCSSCCCEEBCSSSC--SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCCC
T ss_pred hhHhhCCcEEecCccc--cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCCC
Confidence 4567788877765432 2455689999999999989999999999999999999996 78999999988654
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.7e-14 Score=112.25 Aligned_cols=57 Identities=33% Similarity=0.869 Sum_probs=50.3
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP 506 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~P 506 (509)
....+|+||++.|..++.+..|||+|.||..||.+||+. +.+||+||+++.....++
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~ 69 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQLAQLS 69 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSCCSCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCcccccccccC
Confidence 345689999999999888999999999999999999996 779999999998766653
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.48 E-value=2.1e-14 Score=113.89 Aligned_cols=58 Identities=36% Similarity=0.924 Sum_probs=51.5
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS 507 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~P~ 507 (509)
.+..+|+||++.|..++.+..|+|+|.||..||.+|++. +.+||+||+.+...+..++
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence 345689999999999888899999999999999999986 7899999999988877654
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=6.9e-14 Score=108.55 Aligned_cols=54 Identities=48% Similarity=1.013 Sum_probs=47.7
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPD 503 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~d 503 (509)
.....|+||++.|..++.++.+||+|.||..||.+|++. +.+||+||+.+....
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQL 65 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccCcC
Confidence 445689999999988888999999999999999999996 788999999986543
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.45 E-value=3e-14 Score=105.89 Aligned_cols=51 Identities=47% Similarity=1.133 Sum_probs=45.9
Q ss_pred CCccccceecccccCCCceEEeC-CCCccchHHHHHHHhhcCCCCCCcccCcC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLP-CHHEFHKTCVDKWLKEIHRVCPLCRGDIC 500 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLP-CgHvFH~eCIdkWLke~~~TCPLCRa~V~ 500 (509)
++..+|+||++.|..++.+..+| |+|.||..||.+|++. +.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 34568999999999988889998 9999999999999986 889999999874
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.40 E-value=1.8e-13 Score=115.60 Aligned_cols=54 Identities=22% Similarity=0.475 Sum_probs=43.3
Q ss_pred ccccceecccccCCC---------------ceEEeCCCCccchHHHHHHHh----hcCCCCCCcccCcCCCCC
Q 010475 451 VAQCYICLLEYEEGD---------------SVRVLPCHHEFHKTCVDKWLK----EIHRVCPLCRGDICKPDS 504 (509)
Q Consensus 451 ~eeCpICLEeFeegD---------------~VrvLPCgHvFH~eCIdkWLk----e~~~TCPLCRa~V~e~ds 504 (509)
+..|+|||+.|..+. .+..++|+|+||..||..||. ..+.+||+||+.+..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCC
Confidence 458999999997653 345789999999999999995 236789999998865543
No 8
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.38 E-value=2.1e-13 Score=105.65 Aligned_cols=57 Identities=30% Similarity=0.594 Sum_probs=48.8
Q ss_pred CCccccceecccccCC----CceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCCC
Q 010475 449 EEVAQCYICLLEYEEG----DSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP 506 (509)
Q Consensus 449 ee~eeCpICLEeFeeg----D~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~P 506 (509)
.+..+|+||++.|..+ +.++.++|+|.||..||.+|++. +.+||+||..+...+..|
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~ 68 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHP 68 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheee
Confidence 4556899999999763 45688999999999999999986 789999999998877665
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.37 E-value=3.8e-13 Score=99.65 Aligned_cols=50 Identities=40% Similarity=0.830 Sum_probs=43.3
Q ss_pred CccccceecccccCCC-ceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcC
Q 010475 450 EVAQCYICLLEYEEGD-SVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC 500 (509)
Q Consensus 450 e~eeCpICLEeFeegD-~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~ 500 (509)
+..+|+||++.|..++ .+..++|+|.||..||.+|++. ..+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence 4468999999996644 5788999999999999999997 689999999874
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=6.8e-13 Score=101.75 Aligned_cols=52 Identities=31% Similarity=0.632 Sum_probs=44.3
Q ss_pred CCccccceecccccCC----CceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCC
Q 010475 449 EEVAQCYICLLEYEEG----DSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK 501 (509)
Q Consensus 449 ee~eeCpICLEeFeeg----D~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e 501 (509)
.+...|+||++.|..+ ..+..++|+|.||..||.+|++. +.+||+||..|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 3456899999999764 34588999999999999999996 8899999998864
No 11
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=5e-13 Score=108.50 Aligned_cols=51 Identities=37% Similarity=0.888 Sum_probs=40.5
Q ss_pred CccccceecccccC-----------CCceEEeC-CCCccchHHHHHHHhhcCCCCCCcccCcCC
Q 010475 450 EVAQCYICLLEYEE-----------GDSVRVLP-CHHEFHKTCVDKWLKEIHRVCPLCRGDICK 501 (509)
Q Consensus 450 e~eeCpICLEeFee-----------gD~VrvLP-CgHvFH~eCIdkWLke~~~TCPLCRa~V~e 501 (509)
++..|+||+++|.. ++.++.++ |+|.||..||.+||+. +.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 34568888877754 44466665 9999999999999996 7899999998754
No 12
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.32 E-value=3.7e-13 Score=101.88 Aligned_cols=55 Identities=31% Similarity=0.629 Sum_probs=46.8
Q ss_pred ccccceecccccCC----CceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCCC
Q 010475 451 VAQCYICLLEYEEG----DSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP 506 (509)
Q Consensus 451 ~eeCpICLEeFeeg----D~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~P 506 (509)
..+|+||++.|..+ +.+..++|+|.||..||.+|++. +.+||+||+.+...+..|
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~ 61 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHP 61 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEE
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceee
Confidence 45899999999753 45688999999999999999996 889999999998766543
No 13
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.31 E-value=1.6e-12 Score=112.05 Aligned_cols=51 Identities=33% Similarity=0.634 Sum_probs=43.3
Q ss_pred CCccccceecccccCCC---------------ceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcC
Q 010475 449 EEVAQCYICLLEYEEGD---------------SVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC 500 (509)
Q Consensus 449 ee~eeCpICLEeFeegD---------------~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~ 500 (509)
.+++.|+||++.|.... .++.++|+|.||..||.+||+. +.+||+||+++.
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 45678999999998541 3677899999999999999996 889999999853
No 14
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2.9e-12 Score=100.77 Aligned_cols=56 Identities=21% Similarity=0.475 Sum_probs=47.2
Q ss_pred CCccccceecccccCCCceEEe-CCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCCCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVL-PCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPSE 508 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvL-PCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~P~~ 508 (509)
.+...|+||++.|..+ +.+ +|+|.||..||.+|++. +..||+||..+...+..++.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 13 TPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp CGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCCC
T ss_pred CCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCcccccccC
Confidence 3456899999998774 455 99999999999999986 78999999999888777653
No 15
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=5.8e-12 Score=103.60 Aligned_cols=56 Identities=30% Similarity=0.786 Sum_probs=46.2
Q ss_pred CCccccceecccccCCCceEEeCCC-----CccchHHHHHHHhhcC-CCCCCcccCcCCCCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCH-----HEFHKTCVDKWLKEIH-RVCPLCRGDICKPDSL 505 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCg-----HvFH~eCIdkWLke~~-~TCPLCRa~V~e~ds~ 505 (509)
.+...|.||+++|.+++.+ ++||. |.||..||++||+... .+||+||..+.....+
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~ 74 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKL 74 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCS
T ss_pred CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCccc
Confidence 4556899999999877766 69996 9999999999998632 5899999999765554
No 16
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=6.9e-12 Score=100.58 Aligned_cols=55 Identities=27% Similarity=0.612 Sum_probs=46.0
Q ss_pred CCccccceecccccCCCc-eEEeCCCCccchHHHHHHHhhc--CCCCCCcccCcCCCC
Q 010475 449 EEVAQCYICLLEYEEGDS-VRVLPCHHEFHKTCVDKWLKEI--HRVCPLCRGDICKPD 503 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~-VrvLPCgHvFH~eCIdkWLke~--~~TCPLCRa~V~e~d 503 (509)
.+..+|+||++.|...+. .+.++|+|.||..||.+|++.. ...||+||..+...+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 445689999999988664 7889999999999999999862 378999999886653
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.24 E-value=4.2e-12 Score=97.97 Aligned_cols=49 Identities=31% Similarity=0.845 Sum_probs=42.4
Q ss_pred CccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCC
Q 010475 450 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK 501 (509)
Q Consensus 450 e~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e 501 (509)
...+|+||++.+.. .+..+||+|.||..||.+|++. +.+||+||..+..
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 45689999999865 3578999999999999999986 7899999998864
No 18
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.22 E-value=1.2e-11 Score=98.14 Aligned_cols=54 Identities=28% Similarity=0.657 Sum_probs=44.8
Q ss_pred CCccccceecccccCCCceEEeC-CCCccchHHHHHHHhhc-CCCCCCcccCcCCCCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLP-CHHEFHKTCVDKWLKEI-HRVCPLCRGDICKPDSL 505 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLP-CgHvFH~eCIdkWLke~-~~TCPLCRa~V~e~ds~ 505 (509)
.+...|+||++.|..+ +.++ |+|.||..||..|++.. ...||+||+.+..++.+
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2yur_A 13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDAL 68 (74)
T ss_dssp CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTT
T ss_pred CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcccc
Confidence 3456899999999875 6799 99999999999999852 26899999997766655
No 19
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=5.3e-12 Score=97.49 Aligned_cols=53 Identities=25% Similarity=0.521 Sum_probs=44.3
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDS 504 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds 504 (509)
.+...|+||++.+..+ +.++|||.||..||.+|++.....||+||+.+...+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred CcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 3456899999999875 4489999999999999996446789999999987654
No 20
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=2.4e-12 Score=100.09 Aligned_cols=52 Identities=35% Similarity=0.926 Sum_probs=45.0
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSL 505 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~ 505 (509)
.+...|+||++.+.. +.+||+|.||..||.+|++. +..||+||..+...+..
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~ 64 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGANES 64 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCCCC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCCcc
Confidence 345689999999876 78999999999999999985 88999999999876644
No 21
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=3.8e-12 Score=99.85 Aligned_cols=51 Identities=33% Similarity=0.557 Sum_probs=43.6
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPD 503 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~d 503 (509)
.+...|+||++.|.. .+.+||+|.||..||.+|++. +..||+||..+...+
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPEDF 63 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHHH
T ss_pred CCCCCCccCCcccCC---CEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHhh
Confidence 445689999999866 478899999999999999986 789999999986544
No 22
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.21 E-value=4.8e-12 Score=100.26 Aligned_cols=56 Identities=20% Similarity=0.488 Sum_probs=47.7
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS 507 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~P~ 507 (509)
.+...|+||++.|.++ +.++|||.||..||.+|++..+.+||+||..+...+..|+
T Consensus 6 ~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n 61 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPN 61 (78)
T ss_dssp SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEEC
T ss_pred cccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccC
Confidence 3456899999999774 6789999999999999998557889999999987776665
No 23
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.21 E-value=1.2e-12 Score=115.34 Aligned_cols=67 Identities=28% Similarity=0.582 Sum_probs=7.9
Q ss_pred hcCCceeeecccccc-cCCccccceecccccCC-------------C--ceEEeCCCCccchHHHHHHHhhcCCCCCCcc
Q 010475 433 ESLPVKLYTKSQKYQ-NEEVAQCYICLLEYEEG-------------D--SVRVLPCHHEFHKTCVDKWLKEIHRVCPLCR 496 (509)
Q Consensus 433 kSLP~~~~skssk~~-~ee~eeCpICLEeFeeg-------------D--~VrvLPCgHvFH~eCIdkWLke~~~TCPLCR 496 (509)
+.+.++.+....... ..+++.|+||+++|... + .+..++|+|.||..||.+||+. +.+||+||
T Consensus 29 ~r~~ikkw~ava~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr 107 (117)
T 4a0k_B 29 KRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDN 107 (117)
T ss_dssp CSEEEEEEEEEEEEEECCCC------------------------------------------------------------
T ss_pred CceEEEEEEEEEEEeecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCC
Confidence 444444454443321 24557899999999752 2 2444689999999999999996 88999999
Q ss_pred cCcC
Q 010475 497 GDIC 500 (509)
Q Consensus 497 a~V~ 500 (509)
+++.
T Consensus 108 ~~~~ 111 (117)
T 4a0k_B 108 REWE 111 (117)
T ss_dssp ----
T ss_pred Ceee
Confidence 9864
No 24
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.1e-11 Score=96.59 Aligned_cols=52 Identities=27% Similarity=0.551 Sum_probs=43.4
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhh--cCCCCCCcccCcCCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE--IHRVCPLCRGDICKPD 503 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke--~~~TCPLCRa~V~e~d 503 (509)
.+...|+||++.|.. .+.++|+|.||..||..|++. ....||+||..+...+
T Consensus 18 ~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 18 QEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred ccCCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 345689999999876 467899999999999999972 3568999999987654
No 25
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.18 E-value=9.6e-12 Score=95.78 Aligned_cols=57 Identities=23% Similarity=0.405 Sum_probs=46.0
Q ss_pred ccccceecc-cccCCCc-eEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCCCC
Q 010475 451 VAQCYICLL-EYEEGDS-VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS 507 (509)
Q Consensus 451 ~eeCpICLE-eFeegD~-VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~P~ 507 (509)
...|+||++ .|..+.. +..++|||.||..||.+|+.+....||+||..+...+..|.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 457999999 7776654 35689999999999999987646789999999987765543
No 26
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.18 E-value=1.7e-11 Score=96.97 Aligned_cols=56 Identities=27% Similarity=0.520 Sum_probs=46.5
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhhc-----CCCCCCcccCcCCCCCCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI-----HRVCPLCRGDICKPDSLPS 507 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~-----~~TCPLCRa~V~e~ds~P~ 507 (509)
.+...|+||++.|..+ ..++|+|.||..||..|++.. ...||+||..+...+..|+
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n 77 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPN 77 (85)
T ss_dssp CTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEEC
T ss_pred ccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcC
Confidence 3456899999999775 578999999999999999862 5689999999987766554
No 27
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.3e-11 Score=98.78 Aligned_cols=48 Identities=23% Similarity=0.581 Sum_probs=41.9
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC 500 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~ 500 (509)
.....|+||++.|..+ +.++|+|.||..||..|++. ...||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRA-TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc
Confidence 3456899999999763 67999999999999999986 789999999985
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=2.3e-11 Score=96.21 Aligned_cols=56 Identities=29% Similarity=0.546 Sum_probs=46.9
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhh-----cCCCCCCcccCcCCCCCCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE-----IHRVCPLCRGDICKPDSLPS 507 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke-----~~~TCPLCRa~V~e~ds~P~ 507 (509)
.+...|+||++.|..+ ..++|+|.||..||..|++. ....||+||..+...+..|+
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n 77 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPN 77 (85)
T ss_dssp CCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCS
T ss_pred cCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCcc
Confidence 3456899999999764 56799999999999999975 26789999999988777665
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.13 E-value=9.8e-12 Score=104.15 Aligned_cols=54 Identities=28% Similarity=0.735 Sum_probs=44.3
Q ss_pred CccccceecccccCCCceEE-eCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCCC
Q 010475 450 EVAQCYICLLEYEEGDSVRV-LPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP 506 (509)
Q Consensus 450 e~eeCpICLEeFeegD~Vrv-LPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~P 506 (509)
+...|+||++.|..+ +. ++|||.||..||.+|++.....||+||..+...+..+
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~ 75 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVN 75 (100)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEE
T ss_pred CCCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHh
Confidence 456899999999763 55 8999999999999999973379999999987655443
No 30
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.13 E-value=1.3e-11 Score=108.67 Aligned_cols=48 Identities=38% Similarity=0.858 Sum_probs=41.9
Q ss_pred ccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCC
Q 010475 451 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKP 502 (509)
Q Consensus 451 ~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ 502 (509)
...|+||++.|.. ++.+||||.||..||..|+.. +.+||+||.++...
T Consensus 53 ~~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE
T ss_pred cCCCcccCcccCC---ceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC
Confidence 3579999999976 478999999999999999986 78999999988543
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.13 E-value=6.6e-12 Score=99.06 Aligned_cols=56 Identities=27% Similarity=0.483 Sum_probs=46.1
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhhc------CCCCCCcccCcCCCCCCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI------HRVCPLCRGDICKPDSLPS 507 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~------~~TCPLCRa~V~e~ds~P~ 507 (509)
.+...|+||++.|..+ +.+||||.||..||..|++.. ...||+||..+...+..++
T Consensus 10 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n 71 (79)
T 2egp_A 10 QEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQAN 71 (79)
T ss_dssp CCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTC
T ss_pred ccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcC
Confidence 3456899999999775 558999999999999999742 5689999999987665554
No 32
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.13 E-value=2.5e-11 Score=104.51 Aligned_cols=54 Identities=26% Similarity=0.445 Sum_probs=44.4
Q ss_pred CccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCC-CCCCC
Q 010475 450 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK-PDSLP 506 (509)
Q Consensus 450 e~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e-~ds~P 506 (509)
+...|+||++.|..+ +.+||||.||..||..|+......||+||..+.. ....+
T Consensus 51 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 105 (124)
T 3fl2_A 51 ETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQV 105 (124)
T ss_dssp HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCC
T ss_pred cCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCC
Confidence 345899999999864 7789999999999999998545589999999977 33334
No 33
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.12 E-value=1.6e-11 Score=104.19 Aligned_cols=55 Identities=29% Similarity=0.581 Sum_probs=46.6
Q ss_pred CCccccceecccccCC----CceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCC
Q 010475 449 EEVAQCYICLLEYEEG----DSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDS 504 (509)
Q Consensus 449 ee~eeCpICLEeFeeg----D~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds 504 (509)
.+..+|+||++.|..+ +.++.++|||.||..||.+||+. +.+||+||..+...+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCccccc
Confidence 3456899999999764 45689999999999999999986 7899999999876654
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.09 E-value=1.9e-11 Score=101.27 Aligned_cols=54 Identities=24% Similarity=0.679 Sum_probs=44.4
Q ss_pred CccccceecccccCCCceEEe-CCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCCCC
Q 010475 450 EVAQCYICLLEYEEGDSVRVL-PCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS 507 (509)
Q Consensus 450 e~eeCpICLEeFeegD~VrvL-PCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~P~ 507 (509)
+...|+||++.|..+ +.+ +|||.||..||..|+.. +..||+||..+...+..++
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n 75 (99)
T 2y43_A 21 DLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNN 75 (99)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEEC
T ss_pred CCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcC
Confidence 345899999999763 555 89999999999999985 7899999999876554443
No 35
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.09 E-value=7.1e-11 Score=96.21 Aligned_cols=51 Identities=25% Similarity=0.632 Sum_probs=42.5
Q ss_pred CCccccceecccccCCCceEEeC-CCCccchHHHHHHHhhc-CCCCCCcccCcCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLP-CHHEFHKTCVDKWLKEI-HRVCPLCRGDICKP 502 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLP-CgHvFH~eCIdkWLke~-~~TCPLCRa~V~e~ 502 (509)
.+...|+||++.|..+ +.+| |||.||..||..|+... +..||+||..+...
T Consensus 11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 63 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 63 (92)
T ss_dssp CTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCT
T ss_pred CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCc
Confidence 4457899999999875 7889 99999999999999742 36899999997433
No 36
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=1e-10 Score=89.37 Aligned_cols=44 Identities=30% Similarity=0.614 Sum_probs=37.4
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhh--cCCCCCCc
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE--IHRVCPLC 495 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke--~~~TCPLC 495 (509)
.+...|+||++.|..+ +.++|+|.||..||.+|++. ....||+|
T Consensus 18 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4456899999999864 67899999999999999984 35689998
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.06 E-value=3.5e-11 Score=102.08 Aligned_cols=57 Identities=30% Similarity=0.594 Sum_probs=47.7
Q ss_pred CCccccceecccccCC----CceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCCC
Q 010475 449 EEVAQCYICLLEYEEG----DSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP 506 (509)
Q Consensus 449 ee~eeCpICLEeFeeg----D~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~P 506 (509)
.+...|+||++.|... ..++.++|+|.||..||.+||+. +.+||+||..+...+..|
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~ 130 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHP 130 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhccee
Confidence 4556899999999753 34578899999999999999996 789999999998766543
No 38
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.04 E-value=1e-10 Score=97.84 Aligned_cols=54 Identities=37% Similarity=0.650 Sum_probs=44.3
Q ss_pred ccccceecccccCCCceEEeCCCCccchHHHHHHHhhc--CCCCCCcccCcCCCCCCCC
Q 010475 451 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI--HRVCPLCRGDICKPDSLPS 507 (509)
Q Consensus 451 ~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~--~~TCPLCRa~V~e~ds~P~ 507 (509)
...|+||++.|..+ +.+||||.||..||..|+... ...||+||..+...+..++
T Consensus 21 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~ 76 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQES 76 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCC
T ss_pred CCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCcc
Confidence 45799999998765 458999999999999999852 2489999999987766554
No 39
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.03 E-value=5.9e-11 Score=100.90 Aligned_cols=53 Identities=26% Similarity=0.500 Sum_probs=44.8
Q ss_pred ccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCCC
Q 010475 451 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP 506 (509)
Q Consensus 451 ~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~P 506 (509)
...|+||++.|..+ +.++|||.||..||..|++.....||+||..+...+..+
T Consensus 23 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 75 (116)
T 1rmd_A 23 SISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES 75 (116)
T ss_dssp HTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBC
T ss_pred CCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccc
Confidence 46899999998764 668999999999999999864678999999988766544
No 40
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.3e-10 Score=86.67 Aligned_cols=44 Identities=32% Similarity=0.881 Sum_probs=36.8
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhh--cCCCCCCc
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE--IHRVCPLC 495 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke--~~~TCPLC 495 (509)
.+...|+||++.|..+ +.++|+|.||..||.+|++. ....||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3456899999999875 56899999999999999653 46789998
No 41
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.00 E-value=1.5e-10 Score=97.48 Aligned_cols=50 Identities=26% Similarity=0.701 Sum_probs=42.6
Q ss_pred CCccccceecccccCCCceEEe-CCCCccchHHHHHHHhhcCCCCCCcccCcCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVL-PCHHEFHKTCVDKWLKEIHRVCPLCRGDICKP 502 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvL-PCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ 502 (509)
.+...|+||++.|..+ +.+ +|||.||..||..|++. ...||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHh-CCcCcCCCcccccc
Confidence 3456899999999763 555 99999999999999986 78999999998765
No 42
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.00 E-value=1.2e-10 Score=99.80 Aligned_cols=55 Identities=29% Similarity=0.634 Sum_probs=45.7
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP 506 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~P 506 (509)
.+...|+||++.|..+ +.++|||.||..||.+|++.....||+||..+...+.+|
T Consensus 16 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 70 (118)
T 3hct_A 16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70 (118)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhccc
Confidence 4456899999998764 678999999999999999864559999999987765544
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.00 E-value=1.9e-10 Score=103.68 Aligned_cols=49 Identities=24% Similarity=0.488 Sum_probs=42.6
Q ss_pred ccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCC
Q 010475 451 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKP 502 (509)
Q Consensus 451 ~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ 502 (509)
...|+||++.|..+ +.+||+|.||..||..|+......||+||..+...
T Consensus 78 ~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 45799999998764 66999999999999999986445899999999876
No 44
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.00 E-value=1.1e-10 Score=104.98 Aligned_cols=52 Identities=25% Similarity=0.553 Sum_probs=42.4
Q ss_pred CccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCC
Q 010475 450 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPD 503 (509)
Q Consensus 450 e~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~d 503 (509)
+...|+||++.|..+ +..++|||.||..||.+|++..+..||+||..+...+
T Consensus 53 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 104 (165)
T 2ckl_B 53 SELMCPICLDMLKNT--MTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKR 104 (165)
T ss_dssp HHHBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGG
T ss_pred CCCCCcccChHhhCc--CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcc
Confidence 345899999999863 3344999999999999999865778999999986443
No 45
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=2.6e-10 Score=93.27 Aligned_cols=49 Identities=27% Similarity=0.581 Sum_probs=40.9
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhhcC--CCCCCcccCcC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIH--RVCPLCRGDIC 500 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~--~TCPLCRa~V~ 500 (509)
+...+|+||++.+..++ ....|+|.||..||.+||+. + .+||+||++..
T Consensus 13 ~~i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~-~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQS-NAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTT-CSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHh-cCCCCCCCCcCcCC
Confidence 44568999999998763 33379999999999999986 4 78999999874
No 46
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.95 E-value=7.4e-11 Score=100.14 Aligned_cols=49 Identities=31% Similarity=0.704 Sum_probs=42.1
Q ss_pred CccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCC
Q 010475 450 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK 501 (509)
Q Consensus 450 e~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e 501 (509)
+...|+||++.|..+ +.++|||.||..||..|+......||+||..+..
T Consensus 14 ~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 346799999999764 7789999999999999997656789999998853
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.94 E-value=2.6e-10 Score=93.70 Aligned_cols=55 Identities=11% Similarity=0.048 Sum_probs=48.1
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS 507 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~P~ 507 (509)
.+...|+||++-|.++ +.++|||.|+..||.+||.. +.+||+|+..+...+..|+
T Consensus 12 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn 66 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPV 66 (85)
T ss_dssp CTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEEC
T ss_pred chheECcccCchhcCC---eECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchH
Confidence 3456899999999885 78999999999999999996 8899999999987776665
No 48
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.93 E-value=2.9e-10 Score=96.52 Aligned_cols=55 Identities=11% Similarity=0.062 Sum_probs=48.7
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS 507 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~P~ 507 (509)
.+...|+||++.|.++ +.+||||.|+..||.+||.. +.+||+|+.++...+..|+
T Consensus 27 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn 81 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPV 81 (100)
T ss_dssp STTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEEC
T ss_pred cHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceEC
Confidence 3456899999999885 88999999999999999985 7899999999988877776
No 49
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.91 E-value=4.2e-10 Score=95.22 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=48.4
Q ss_pred CCccccceecccccCCCceEEeCCC-CccchHHHHHHHhhcCCCCCCcccCcCCCCCCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCH-HEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS 507 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCg-HvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~P~ 507 (509)
.+...|+||++.|.++ ++++|| |.|+..||.+||.. +.+||+||.++...+..|+
T Consensus 20 p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn 75 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPN 75 (98)
T ss_dssp CTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEEC
T ss_pred cHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEc
Confidence 3456899999999885 789999 99999999999986 7899999999988877776
No 50
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.90 E-value=3.9e-10 Score=106.38 Aligned_cols=56 Identities=13% Similarity=0.265 Sum_probs=47.8
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS 507 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~P~ 507 (509)
.+...|+||++.|.++ +++||||.||..||..||.....+||+||.++...+.+|+
T Consensus 206 ~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n 261 (281)
T 2c2l_A 206 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPN 261 (281)
T ss_dssp CSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEEC
T ss_pred CcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCccc
Confidence 3456899999999885 7899999999999999998645569999999987777775
No 51
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.88 E-value=8.3e-10 Score=90.16 Aligned_cols=55 Identities=20% Similarity=0.511 Sum_probs=43.4
Q ss_pred CCccccceecccccCCCceEEe--CCCCccchHHHHHHHhhcCCCCCCcccCcCCCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVL--PCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDS 504 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvL--PCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds 504 (509)
.+...|+||++.+...+. ..+ +|||.||..||.+|+......||+||+.+.....
T Consensus 9 ~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 455689999999865433 344 4999999999999986556789999999876554
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.84 E-value=6.9e-10 Score=99.23 Aligned_cols=50 Identities=18% Similarity=0.305 Sum_probs=42.3
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK 501 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e 501 (509)
.+...|+||++.|..+ +.++|||.||..||.+|++.....||+||.++..
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 4567899999999875 6689999999999999998644589999998643
No 53
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.84 E-value=5e-10 Score=95.86 Aligned_cols=52 Identities=25% Similarity=0.487 Sum_probs=43.7
Q ss_pred CccccceecccccCCCceEEe-CCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCCCC
Q 010475 450 EVAQCYICLLEYEEGDSVRVL-PCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS 507 (509)
Q Consensus 450 e~eeCpICLEeFeegD~VrvL-PCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~P~ 507 (509)
+...|+||++.|..+ +.+ +|||.||..||..|+. ..||+||..+...+..++
T Consensus 21 ~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n 73 (117)
T 1jm7_B 21 KLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKIN 73 (117)
T ss_dssp HTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCC
T ss_pred hCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCcccccccc
Confidence 346899999999775 566 9999999999999997 579999999976666554
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.80 E-value=8.6e-10 Score=83.66 Aligned_cols=51 Identities=24% Similarity=0.552 Sum_probs=41.6
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP 506 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~P 506 (509)
.+...|+||++.|..+ +.|||+|.||..||..| ...||+||+.+..+..-.
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~~~~ 54 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGADTP 54 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCSSCC
T ss_pred ccCCCceEeCCccCCe---EEcCCCCcccHHHHccC----CCCCCcCCcEeecCCcCc
Confidence 3456899999999875 67999999999999884 467999999997665443
No 55
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.77 E-value=2.2e-09 Score=89.43 Aligned_cols=55 Identities=20% Similarity=0.382 Sum_probs=44.8
Q ss_pred CccccceecccccCCCceEEeC-CCCccchHHHHHHHhhc-----CCCCCC--cccC-cCCCCCCCC
Q 010475 450 EVAQCYICLLEYEEGDSVRVLP-CHHEFHKTCVDKWLKEI-----HRVCPL--CRGD-ICKPDSLPS 507 (509)
Q Consensus 450 e~eeCpICLEeFeegD~VrvLP-CgHvFH~eCIdkWLke~-----~~TCPL--CRa~-V~e~ds~P~ 507 (509)
....|+||++.|.++ +.++ |||.|+..||..||... ..+||+ |+.. +...+..|+
T Consensus 6 ~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn 69 (94)
T 2yu4_A 6 SGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQD 69 (94)
T ss_dssp SCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEEC
T ss_pred cEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCC
Confidence 456899999999875 7786 99999999999999863 258999 9877 766666555
No 56
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.76 E-value=3.6e-09 Score=82.65 Aligned_cols=48 Identities=27% Similarity=0.515 Sum_probs=39.6
Q ss_pred CCccccceecccccCCCceEEe--CCCCc-cchHHHHHHHhhcCCCCCCcccCcC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVL--PCHHE-FHKTCVDKWLKEIHRVCPLCRGDIC 500 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvL--PCgHv-FH~eCIdkWLke~~~TCPLCRa~V~ 500 (509)
.+..+|.||++.+.. +..+ ||||. |+..|+..|++. +..||+||+++.
T Consensus 6 ~~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKN---GCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSC---EEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCC---EEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 345689999998655 3445 99999 899999999985 778999999884
No 57
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.74 E-value=3.2e-09 Score=95.75 Aligned_cols=55 Identities=29% Similarity=0.634 Sum_probs=46.0
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP 506 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~P 506 (509)
.+...|+||++.|..+ +.++|||.||..||.+|++.....||+||..+...+.+|
T Consensus 16 ~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 70 (170)
T 3hcs_A 16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70 (170)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhh
Confidence 4456899999999875 668999999999999999864569999999987765544
No 58
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.74 E-value=4.5e-09 Score=108.85 Aligned_cols=50 Identities=28% Similarity=0.752 Sum_probs=42.9
Q ss_pred ccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCC
Q 010475 451 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPD 503 (509)
Q Consensus 451 ~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~d 503 (509)
..+|+||++.+.. ++.+||||.||..||..|+...+..||+||+.+....
T Consensus 332 ~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 3689999999865 5789999999999999999844789999999886543
No 59
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.67 E-value=6.5e-09 Score=97.51 Aligned_cols=55 Identities=13% Similarity=0.263 Sum_probs=47.0
Q ss_pred CccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCCCC
Q 010475 450 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS 507 (509)
Q Consensus 450 e~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~P~ 507 (509)
+...|+||++.|.++ +++||||.|+..||..||.....+||+|+.++...+..|+
T Consensus 105 ~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN 159 (179)
T 2f42_A 105 DYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPN 159 (179)
T ss_dssp GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEEC
T ss_pred HhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcch
Confidence 345799999999885 7889999999999999998633479999999987777776
No 60
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.64 E-value=1.2e-08 Score=79.47 Aligned_cols=47 Identities=19% Similarity=0.460 Sum_probs=38.8
Q ss_pred CccccceecccccCCCceEEe--CCCCc-cchHHHHHHHhhcCCCCCCcccCcC
Q 010475 450 EVAQCYICLLEYEEGDSVRVL--PCHHE-FHKTCVDKWLKEIHRVCPLCRGDIC 500 (509)
Q Consensus 450 e~eeCpICLEeFeegD~VrvL--PCgHv-FH~eCIdkWLke~~~TCPLCRa~V~ 500 (509)
....|.||++.+.+ ...+ ||||. ||..|+.+|.+. ...||+||++|.
T Consensus 6 ~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRD---GNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSC---EEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCC---eEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence 34589999998654 2445 99998 999999999985 678999999884
No 61
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.63 E-value=6.9e-09 Score=82.73 Aligned_cols=44 Identities=30% Similarity=0.609 Sum_probs=37.6
Q ss_pred CccccceecccccCCCceEEeCCCCc-cchHHHHHHHhhcCCCCCCcccCcCC
Q 010475 450 EVAQCYICLLEYEEGDSVRVLPCHHE-FHKTCVDKWLKEIHRVCPLCRGDICK 501 (509)
Q Consensus 450 e~eeCpICLEeFeegD~VrvLPCgHv-FH~eCIdkWLke~~~TCPLCRa~V~e 501 (509)
+...|+||++.+.. ++.+||||. ||..|+..| ..||+||+.+..
T Consensus 23 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 34589999998766 578899999 999999998 579999998854
No 62
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.45 E-value=9.8e-08 Score=74.62 Aligned_cols=49 Identities=29% Similarity=0.725 Sum_probs=38.1
Q ss_pred CCccccceecccccCCCceEEeCCC--C---ccchHHHHHHHhh-cCCCCCCcccCcC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCH--H---EFHKTCVDKWLKE-IHRVCPLCRGDIC 500 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCg--H---vFH~eCIdkWLke-~~~TCPLCRa~V~ 500 (509)
++...|.||+++. ++.+ .+||. | .||..||.+||.. .+.+||+|+.++.
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4556899999984 3334 68955 4 9999999999974 3678999999874
No 63
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.44 E-value=2.8e-08 Score=102.15 Aligned_cols=52 Identities=27% Similarity=0.751 Sum_probs=40.3
Q ss_pred CCccccceecccccCCCce----E-EeCCCCccchHHHHHHHhhcC----------CCCCCcccCcC
Q 010475 449 EEVAQCYICLLEYEEGDSV----R-VLPCHHEFHKTCVDKWLKEIH----------RVCPLCRGDIC 500 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~V----r-vLPCgHvFH~eCIdkWLke~~----------~TCPLCRa~V~ 500 (509)
++..+|+||++.+.++..+ . ..+|+|.||..||.+||+... ..||+||++|.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 4567899999999873332 1 246999999999999998521 46999999875
No 64
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.41 E-value=9.3e-08 Score=78.80 Aligned_cols=49 Identities=22% Similarity=0.548 Sum_probs=39.1
Q ss_pred CccccceecccccCCCceEEeCCCCccchHHHHHHHhh----c---CCCCCC--cccC
Q 010475 450 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE----I---HRVCPL--CRGD 498 (509)
Q Consensus 450 e~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke----~---~~TCPL--CRa~ 498 (509)
+..+|+||++++..++.+...+|+|.||..||..|++. . ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 34579999999877655555579999999999999973 1 247999 9987
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=7.1e-08 Score=76.78 Aligned_cols=44 Identities=27% Similarity=0.582 Sum_probs=36.2
Q ss_pred ccccceecccccCCCceEEeCCCCc-cchHHHHHHHhhcCCCCCCcccCcCCC
Q 010475 451 VAQCYICLLEYEEGDSVRVLPCHHE-FHKTCVDKWLKEIHRVCPLCRGDICKP 502 (509)
Q Consensus 451 ~eeCpICLEeFeegD~VrvLPCgHv-FH~eCIdkWLke~~~TCPLCRa~V~e~ 502 (509)
..+|+||++.+.. ++.+||+|. ||..|+.. ...||+||.++...
T Consensus 25 ~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCC---EEEecCCCHHHHHHHhhC-----CCCCccCCceecCc
Confidence 4579999999766 467899999 99999954 36799999988653
No 66
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.39 E-value=6.5e-08 Score=75.66 Aligned_cols=52 Identities=12% Similarity=0.160 Sum_probs=45.6
Q ss_pred cccceecccccCCCceEEe-CCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCCCC
Q 010475 452 AQCYICLLEYEEGDSVRVL-PCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS 507 (509)
Q Consensus 452 eeCpICLEeFeegD~VrvL-PCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~P~ 507 (509)
..|+||++.|.++ +++ +|||+|.+.||.+||++ +.+||+++.++...+.+|+
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~ 56 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEI 56 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEEC
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEEC
Confidence 4699999999874 667 89999999999999986 6789999999988887765
No 67
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=2.8e-07 Score=73.00 Aligned_cols=46 Identities=28% Similarity=0.694 Sum_probs=37.7
Q ss_pred CCccccceecccccCCCceEEeCCCCc-cchHHHHHHHhhcCCCCCCcccCcCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHE-FHKTCVDKWLKEIHRVCPLCRGDICKP 502 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHv-FH~eCIdkWLke~~~TCPLCRa~V~e~ 502 (509)
.+...|.||++.+.. ++.+||+|. ||..|+.. ...||+||+.|...
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc-----CCCCCCCCcchhce
Confidence 345689999998655 688999999 99999983 46899999988653
No 68
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.30 E-value=1.4e-07 Score=76.75 Aligned_cols=43 Identities=26% Similarity=0.702 Sum_probs=36.2
Q ss_pred ccccceecccccCCCceEEeCCCCc-cchHHHHHHHhhcCCCCCCcccCcCC
Q 010475 451 VAQCYICLLEYEEGDSVRVLPCHHE-FHKTCVDKWLKEIHRVCPLCRGDICK 501 (509)
Q Consensus 451 ~eeCpICLEeFeegD~VrvLPCgHv-FH~eCIdkWLke~~~TCPLCRa~V~e 501 (509)
...|+||++.+.. ++.+||||. ||..|+..| ..||+||..+..
T Consensus 18 ~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL-----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc-----CcCCCCCchhhC
Confidence 4579999998765 588999999 999999876 379999998754
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.24 E-value=1.6e-07 Score=93.21 Aligned_cols=56 Identities=23% Similarity=0.452 Sum_probs=44.8
Q ss_pred CccccceecccccCCCceEEeCCCCccchHHHHHHHhhc-CCCCCC--cccCcCCCCCCCC
Q 010475 450 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI-HRVCPL--CRGDICKPDSLPS 507 (509)
Q Consensus 450 e~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~-~~TCPL--CRa~V~e~ds~P~ 507 (509)
....|+||++.|.++ |+.+.|||.||..||..|++.. ...||+ |+..+...+..|+
T Consensus 180 ~el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN 238 (267)
T 3htk_C 180 IELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRD 238 (267)
T ss_dssp CCSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEEC
T ss_pred eeeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcC
Confidence 446899999999775 4445899999999999999852 357999 9998877665554
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.13 E-value=4.7e-07 Score=92.11 Aligned_cols=44 Identities=34% Similarity=0.761 Sum_probs=37.9
Q ss_pred CccccceecccccCCCceEEeCCCCc-cchHHHHHHHhhcCCCCCCcccCcCC
Q 010475 450 EVAQCYICLLEYEEGDSVRVLPCHHE-FHKTCVDKWLKEIHRVCPLCRGDICK 501 (509)
Q Consensus 450 e~eeCpICLEeFeegD~VrvLPCgHv-FH~eCIdkWLke~~~TCPLCRa~V~e 501 (509)
+...|+||++.+.. ++.+||||. ||..|+..| ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 45689999999866 578899999 999999988 479999998854
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.89 E-value=7.2e-06 Score=71.18 Aligned_cols=47 Identities=28% Similarity=0.568 Sum_probs=39.2
Q ss_pred ccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCC
Q 010475 453 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK 501 (509)
Q Consensus 453 eCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e 501 (509)
-|.+|--.+.. ..+.+||+|+||.+|+..|.++...+||.|+.+|..
T Consensus 3 fC~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 37778766544 578999999999999999998667899999998864
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.35 E-value=0.00011 Score=71.30 Aligned_cols=50 Identities=26% Similarity=0.516 Sum_probs=39.5
Q ss_pred CccccceecccccCCCceEEeCCCCccchHHHHHHHhhc-CCCCCCcccCcCC
Q 010475 450 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI-HRVCPLCRGDICK 501 (509)
Q Consensus 450 e~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~-~~TCPLCRa~V~e 501 (509)
....|.||.+-...+ ..+-.|+|.||..|+.+|++.. ...||.|+...+.
T Consensus 179 ~i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 356899999998876 3333499999999999999852 3489999987643
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.95 E-value=0.037 Score=45.51 Aligned_cols=35 Identities=11% Similarity=0.365 Sum_probs=26.9
Q ss_pred ccccceecccccCCCceEEeCCCCccchHHHHH-HH
Q 010475 451 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDK-WL 485 (509)
Q Consensus 451 ~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdk-WL 485 (509)
+..|.||++.|..+.....+.|+|.||..|+.. |.
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 357999998754433344599999999999998 54
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=89.11 E-value=0.18 Score=40.03 Aligned_cols=47 Identities=28% Similarity=0.439 Sum_probs=33.5
Q ss_pred CccccceecccccCCCceEEeCCCCccchHHHHHHHhhc---CCCCCCcccCc
Q 010475 450 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI---HRVCPLCRGDI 499 (509)
Q Consensus 450 e~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~---~~TCPLCRa~V 499 (509)
....|.||.+. ++.+..--|...||..|+...|... .-.||.|.+..
T Consensus 11 ~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 34579999753 3334444499999999999988752 23799997653
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=85.98 E-value=0.39 Score=41.52 Aligned_cols=52 Identities=19% Similarity=0.305 Sum_probs=39.1
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCCCCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSL 505 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~ 505 (509)
.+...|-.|+-.... .+--..|.+|..|+...|.. ...||+|+++++.+-.+
T Consensus 26 ~G~~nCKsCWf~~k~----LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 26 LGPQFCKSCWFENKG----LVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPTKLRP 77 (99)
T ss_dssp SCCCCCCSSCSCCSS----EEECSSCEEEHHHHHHTCSS-SSEETTTTEECCCCSCT
T ss_pred cCcccChhhccccCC----eeeecchhhHHHHHHHHHhh-ccCCcccCCcCCcceec
Confidence 345679999987653 22334699999999999984 77899999988765443
No 76
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=85.36 E-value=0.35 Score=55.45 Aligned_cols=55 Identities=13% Similarity=0.159 Sum_probs=47.7
Q ss_pred CCccccceecccccCCCceEEeCCC-CccchHHHHHHHhhcCCCCCCcccCcCCCCCCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCH-HEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS 507 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCg-HvFH~eCIdkWLke~~~TCPLCRa~V~e~ds~P~ 507 (509)
.+...|||-++-|.++ +.+|-| +.|-+.+|.+||.. +.+||+=|.++...+..||
T Consensus 889 P~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN 944 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPN 944 (968)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEEC
T ss_pred cHHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCccccccc
Confidence 3456799999999885 889987 58999999999986 8899999999988877776
No 77
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=84.49 E-value=0.18 Score=40.12 Aligned_cols=52 Identities=21% Similarity=0.417 Sum_probs=35.0
Q ss_pred CccccceecccccCCCceEEeCCCCccchHHHHHHHhh---cCCCCCCcccCcCC
Q 010475 450 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE---IHRVCPLCRGDICK 501 (509)
Q Consensus 450 e~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke---~~~TCPLCRa~V~e 501 (509)
+...|.||.........|..=.|...||..|+..-+.. ....||.|+..+.+
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 34569999887542223333349999999999865542 24579999876654
No 78
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=83.79 E-value=0.23 Score=38.34 Aligned_cols=50 Identities=24% Similarity=0.440 Sum_probs=34.8
Q ss_pred CCccccceecccccCCCc-eEEeCCCCccchHHHHHHHhh----cCCCCCCcccC
Q 010475 449 EEVAQCYICLLEYEEGDS-VRVLPCHHEFHKTCVDKWLKE----IHRVCPLCRGD 498 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~-VrvLPCgHvFH~eCIdkWLke----~~~TCPLCRa~ 498 (509)
.+...|+||...+.++.. |..-.|...||..|+.--... ....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 345679999998865443 444459999999998653321 25789999764
No 79
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=81.58 E-value=0.36 Score=45.32 Aligned_cols=48 Identities=21% Similarity=0.465 Sum_probs=33.8
Q ss_pred cccceecccccCCCc----eEEeCCCCccchHHHHH------HHh----hcCCCCCCcccCc
Q 010475 452 AQCYICLLEYEEGDS----VRVLPCHHEFHKTCVDK------WLK----EIHRVCPLCRGDI 499 (509)
Q Consensus 452 eeCpICLEeFeegD~----VrvLPCgHvFH~eCIdk------WLk----e~~~TCPLCRa~V 499 (509)
.-|+||...|.+++. |..--|...||..|+.- -+. .....||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 359999999988762 33334999999999742 121 0267999998753
No 80
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=77.23 E-value=0.32 Score=41.63 Aligned_cols=49 Identities=20% Similarity=0.401 Sum_probs=33.9
Q ss_pred cccceecccccCCCceEEe--CCCCccchHHHHHHH---h------hcCCCCCCcccCcC
Q 010475 452 AQCYICLLEYEEGDSVRVL--PCHHEFHKTCVDKWL---K------EIHRVCPLCRGDIC 500 (509)
Q Consensus 452 eeCpICLEeFeegD~VrvL--PCgHvFH~eCIdkWL---k------e~~~TCPLCRa~V~ 500 (509)
..|.||...|......+.- .|...||..|+.--. + .....||.|+....
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 4699999998665444443 489999999975221 0 13568999987543
No 81
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=71.03 E-value=1.3 Score=33.13 Aligned_cols=44 Identities=18% Similarity=0.337 Sum_probs=29.9
Q ss_pred ccceecccccCCCce-EEe-CCCCccchHHHHHHHh---hcCCCCCCcc
Q 010475 453 QCYICLLEYEEGDSV-RVL-PCHHEFHKTCVDKWLK---EIHRVCPLCR 496 (509)
Q Consensus 453 eCpICLEeFeegD~V-rvL-PCgHvFH~eCIdkWLk---e~~~TCPLCR 496 (509)
.|.||...+..++.. ..- .|...||..|+.--.. ..+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 478999988655443 333 4889999999753221 2478899985
No 82
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=69.73 E-value=1.3 Score=32.61 Aligned_cols=45 Identities=27% Similarity=0.578 Sum_probs=30.2
Q ss_pred ccceecccccCCCceEEeCCCCccchHHHHHHHhh---cCCCCCCccc
Q 010475 453 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE---IHRVCPLCRG 497 (509)
Q Consensus 453 eCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke---~~~TCPLCRa 497 (509)
.|.||...-..++.+..-.|...||..|+..=|.+ ..-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 58899876433333444459999999999764443 1335999964
No 83
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=69.53 E-value=0.73 Score=35.57 Aligned_cols=52 Identities=23% Similarity=0.504 Sum_probs=33.8
Q ss_pred CCccccceecccccCC-Cc-eEEeCCCCccchHHHHHHHh------hcCCCCCCcccCcC
Q 010475 449 EEVAQCYICLLEYEEG-DS-VRVLPCHHEFHKTCVDKWLK------EIHRVCPLCRGDIC 500 (509)
Q Consensus 449 ee~eeCpICLEeFeeg-D~-VrvLPCgHvFH~eCIdkWLk------e~~~TCPLCRa~V~ 500 (509)
.+...|.||....... .. +..-.|...||..|+..=|. ...-.||.|.....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 3456899999875432 22 33334999999999886442 12456999976543
No 84
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=67.75 E-value=1.3 Score=35.27 Aligned_cols=46 Identities=24% Similarity=0.377 Sum_probs=30.8
Q ss_pred cccceecccccCCCceEEeCCCCccchHHHHHHHh--------hcCCCCCCcccC
Q 010475 452 AQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLK--------EIHRVCPLCRGD 498 (509)
Q Consensus 452 eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLk--------e~~~TCPLCRa~ 498 (509)
.-| ||...+..+..|..-.|...||..|+.--.. .....||.|+..
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 346 8988875433444445999999999842211 136889999754
No 85
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=67.28 E-value=1.1 Score=37.91 Aligned_cols=48 Identities=23% Similarity=0.484 Sum_probs=31.9
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhh---cCCCCCCcc
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE---IHRVCPLCR 496 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke---~~~TCPLCR 496 (509)
..+..|.||.+.-+..+.+..-.|...||..|+..++.. ..-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 345689999886433333555569999999999887642 233466553
No 86
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=66.30 E-value=5.1 Score=32.17 Aligned_cols=47 Identities=23% Similarity=0.479 Sum_probs=31.2
Q ss_pred cccceecccccCCCc-eEEeCCCCccchHHHHHHHhh----cCCCCCCcccCc
Q 010475 452 AQCYICLLEYEEGDS-VRVLPCHHEFHKTCVDKWLKE----IHRVCPLCRGDI 499 (509)
Q Consensus 452 eeCpICLEeFeegD~-VrvLPCgHvFH~eCIdkWLke----~~~TCPLCRa~V 499 (509)
.-| ||...+..+.. |..--|...||..|+.--... ....||.|+...
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 346 99888753333 444459999999998532221 256899998653
No 87
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=66.15 E-value=1.9 Score=33.31 Aligned_cols=47 Identities=21% Similarity=0.609 Sum_probs=32.3
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhh---cCCCCCCcccC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE---IHRVCPLCRGD 498 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke---~~~TCPLCRa~ 498 (509)
.....|.||... ++.+..-.|...||..|+..-|.+ ..-.||.|...
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 345679999873 333333349999999999986543 23479999753
No 88
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=64.88 E-value=2.4 Score=35.84 Aligned_cols=45 Identities=27% Similarity=0.574 Sum_probs=28.9
Q ss_pred ccccceecccccCCCceEEeC--CC-CccchHHHHHHHhh---cCCCCCCcccCc
Q 010475 451 VAQCYICLLEYEEGDSVRVLP--CH-HEFHKTCVDKWLKE---IHRVCPLCRGDI 499 (509)
Q Consensus 451 ~eeCpICLEeFeegD~VrvLP--Cg-HvFH~eCIdkWLke---~~~TCPLCRa~V 499 (509)
..-| ||..... ++.|..=. |. ..||..||. |.. .+..||.|+...
T Consensus 36 ~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 36 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 3456 9988653 43333333 55 689999997 442 245799997644
No 89
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=64.53 E-value=4 Score=32.21 Aligned_cols=48 Identities=23% Similarity=0.450 Sum_probs=31.2
Q ss_pred CCccccceecccccCCCce-EEe-CCCCccchHHHHHHHhh---------cCCCCCCcc
Q 010475 449 EEVAQCYICLLEYEEGDSV-RVL-PCHHEFHKTCVDKWLKE---------IHRVCPLCR 496 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~V-rvL-PCgHvFH~eCIdkWLke---------~~~TCPLCR 496 (509)
+....|++|...+..++.. ..- -|.-.||..|+----.. .+..||.|.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 3456799999998766554 344 69999999997432210 145688885
No 90
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=63.95 E-value=2.9 Score=35.53 Aligned_cols=32 Identities=22% Similarity=0.678 Sum_probs=23.5
Q ss_pred CCccccceecccccCCCceEEeC---CCCccchHHHHHH
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLP---CHHEFHKTCVDKW 484 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLP---CgHvFH~eCIdkW 484 (509)
..+..|.||- .|..+ ..+| |+-+||..|+.+-
T Consensus 13 ~~D~~C~VC~-~~t~~---~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCE-VWTAE---SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTC-CCCSS---CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCccc-ccccc---ceeccccccccccHhhcccc
Confidence 3456899994 34444 2445 8999999999996
No 91
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=63.12 E-value=5.8 Score=33.79 Aligned_cols=45 Identities=20% Similarity=0.498 Sum_probs=28.7
Q ss_pred cccceecccc------cCCCceEEeCCCCccchHHHHH------HHhhcCCCCCCcc
Q 010475 452 AQCYICLLEY------EEGDSVRVLPCHHEFHKTCVDK------WLKEIHRVCPLCR 496 (509)
Q Consensus 452 eeCpICLEeF------eegD~VrvLPCgHvFH~eCIdk------WLke~~~TCPLCR 496 (509)
..|.||+..- ..++.+..-.|+..||..||.. .+....-.||.|+
T Consensus 6 ~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 6 PICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp SSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred ccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 4699998763 1223344455999999999953 2333344577764
No 92
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=62.88 E-value=1.7 Score=39.20 Aligned_cols=47 Identities=26% Similarity=0.524 Sum_probs=31.2
Q ss_pred CccccceecccccCCCc-eEEeCCCCccchHHHHHHHh----hcCCCCCCccc
Q 010475 450 EVAQCYICLLEYEEGDS-VRVLPCHHEFHKTCVDKWLK----EIHRVCPLCRG 497 (509)
Q Consensus 450 e~eeCpICLEeFeegD~-VrvLPCgHvFH~eCIdkWLk----e~~~TCPLCRa 497 (509)
+..-| ||...+..+.. +..--|...||..|+.--.. .....||.|+.
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 34468 99988754433 33334999999999853221 12568999975
No 93
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=62.79 E-value=1.2 Score=34.44 Aligned_cols=50 Identities=24% Similarity=0.525 Sum_probs=33.2
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhh---cCCCCCCcccCcCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE---IHRVCPLCRGDICK 501 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke---~~~TCPLCRa~V~e 501 (509)
.....|.||... ++.+..-.|...||..|+..-|.+ ..-.||.|.....+
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~k 59 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALK 59 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCCT
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchhc
Confidence 345579999753 333333349999999999875543 23469999765443
No 94
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=61.91 E-value=1.3 Score=37.29 Aligned_cols=46 Identities=24% Similarity=0.491 Sum_probs=31.1
Q ss_pred ccccceecccccCCCceEEeCCCCccchHHHHHHHhhc--CCCCCCccc
Q 010475 451 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI--HRVCPLCRG 497 (509)
Q Consensus 451 ~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~--~~TCPLCRa 497 (509)
...| ||-.....+..|..--|.-.||..|+..=+... ...||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3457 888776555444444599999999987533321 357999974
No 95
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=59.85 E-value=1.2 Score=41.49 Aligned_cols=47 Identities=28% Similarity=0.469 Sum_probs=31.9
Q ss_pred CccccceecccccCCCceEEeCCCCccchHHHHHHHhh---cCCCCCCcccCc
Q 010475 450 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE---IHRVCPLCRGDI 499 (509)
Q Consensus 450 e~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke---~~~TCPLCRa~V 499 (509)
....|.||... ++.+..=.|...||..|+.+.|.. ..-.||.|+..-
T Consensus 6 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 44579999753 322222239999999999887763 234699998754
No 96
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=58.85 E-value=12 Score=31.99 Aligned_cols=50 Identities=20% Similarity=0.276 Sum_probs=39.4
Q ss_pred ccccceecccccCCC---c-eEEeCCCCccchHHHHHHHhhcCCCCCCcccCcC
Q 010475 451 VAQCYICLLEYEEGD---S-VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC 500 (509)
Q Consensus 451 ~eeCpICLEeFeegD---~-VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~ 500 (509)
...|.||=+++.... . |..--|+--.|+.|..-=.++.+..||.|+..+-
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 357999999964332 2 4445588889999999988888899999999885
No 97
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.97 E-value=0.89 Score=34.43 Aligned_cols=46 Identities=26% Similarity=0.585 Sum_probs=31.2
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhh---cCCCCCCccc
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE---IHRVCPLCRG 497 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke---~~~TCPLCRa 497 (509)
.....|.||... ++.+..-.|...||..|+..-|.. ..-.||.|..
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 345679999874 333444459999999999875543 1235888854
No 98
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=56.94 E-value=1.3 Score=36.60 Aligned_cols=53 Identities=15% Similarity=0.427 Sum_probs=34.6
Q ss_pred ccccceecccccCC-CceEEe-CCCCccchHHHHHHHhh-------cCCCCCCcccCcCCCC
Q 010475 451 VAQCYICLLEYEEG-DSVRVL-PCHHEFHKTCVDKWLKE-------IHRVCPLCRGDICKPD 503 (509)
Q Consensus 451 ~eeCpICLEeFeeg-D~VrvL-PCgHvFH~eCIdkWLke-------~~~TCPLCRa~V~e~d 503 (509)
...|.||...-... +.+..- -|...||..|+..=|.. ..-.||.|+.....+.
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~ 77 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMA 77 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCST
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhc
Confidence 45799999864332 223222 39999999999876531 2347999977554443
No 99
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=56.85 E-value=4.2 Score=34.23 Aligned_cols=48 Identities=27% Similarity=0.500 Sum_probs=33.0
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhh---cCCCCCCcccCc
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE---IHRVCPLCRGDI 499 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke---~~~TCPLCRa~V 499 (509)
.....|.||... ++.+..-.|.-.||..|+.+=|.+ ..-.||.|...-
T Consensus 23 ~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 23 DSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 445679999864 333333348999999999876653 233699998643
No 100
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=56.82 E-value=2.1 Score=34.49 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=32.1
Q ss_pred ccccceecccccCCCceEEe--CCCCccchHHHHHHHhh--------cCCCCCCcccCcC
Q 010475 451 VAQCYICLLEYEEGDSVRVL--PCHHEFHKTCVDKWLKE--------IHRVCPLCRGDIC 500 (509)
Q Consensus 451 ~eeCpICLEeFeegD~VrvL--PCgHvFH~eCIdkWLke--------~~~TCPLCRa~V~ 500 (509)
...| ||-.....+..|..= -|...||..|+.---.. .+..||.|+..-.
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccC
Confidence 3457 898875555445544 59999999998531111 2578999976543
No 101
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=51.87 E-value=2.2 Score=33.36 Aligned_cols=49 Identities=22% Similarity=0.485 Sum_probs=33.2
Q ss_pred CccccceecccccCCCceEEeCCCCccchHHHHHHHhh---cCCCCCCcccCcCC
Q 010475 450 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE---IHRVCPLCRGDICK 501 (509)
Q Consensus 450 e~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke---~~~TCPLCRa~V~e 501 (509)
.+..|.||... ++.+..-.|...||..|+..-|.. ..-.||.|...-..
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 58 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQ 58 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCCC
T ss_pred CCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcccc
Confidence 45679999864 333444459999999999865543 23369999765443
No 102
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=51.63 E-value=4.8 Score=32.20 Aligned_cols=46 Identities=26% Similarity=0.547 Sum_probs=28.8
Q ss_pred ccccceecccccCCCceEEeC--CC-CccchHHHHHHHhh---cCCCCCCcccCcC
Q 010475 451 VAQCYICLLEYEEGDSVRVLP--CH-HEFHKTCVDKWLKE---IHRVCPLCRGDIC 500 (509)
Q Consensus 451 ~eeCpICLEeFeegD~VrvLP--Cg-HvFH~eCIdkWLke---~~~TCPLCRa~V~ 500 (509)
..-| ||..... ++.|..=. |. ..||..||. |.. .+-.||.|+....
T Consensus 16 ~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 16 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp CCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 3457 8987643 43222223 55 689999998 543 2457999976543
No 103
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=50.08 E-value=0.87 Score=34.87 Aligned_cols=48 Identities=25% Similarity=0.580 Sum_probs=32.6
Q ss_pred CccccceecccccCCCceEEeCCCCccchHHHHHHHhh---cCCCCCCcccCcC
Q 010475 450 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE---IHRVCPLCRGDIC 500 (509)
Q Consensus 450 e~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke---~~~TCPLCRa~V~ 500 (509)
.+..|.||... ++.+..-.|...||..|+..=|.. ..-.||.|.....
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 34579999874 333444459999999999865543 2336999976543
No 104
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=49.77 E-value=3.5 Score=34.19 Aligned_cols=54 Identities=22% Similarity=0.405 Sum_probs=33.6
Q ss_pred Cccccceeccccc-CCCceEE-eCCCCccchHHHHHHHh-hcCCCCCCcccCcCCCC
Q 010475 450 EVAQCYICLLEYE-EGDSVRV-LPCHHEFHKTCVDKWLK-EIHRVCPLCRGDICKPD 503 (509)
Q Consensus 450 e~eeCpICLEeFe-egD~Vrv-LPCgHvFH~eCIdkWLk-e~~~TCPLCRa~V~e~d 503 (509)
+...|.||...-. .++.+.. --|.-.||..|+..-+. ...-.||.|......+.
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~ 80 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPA 80 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhh
Confidence 4567999987642 2222222 23989999999975332 12446999977654443
No 105
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=48.99 E-value=4.5 Score=34.62 Aligned_cols=43 Identities=28% Similarity=0.458 Sum_probs=27.8
Q ss_pred ccceecccccC-------CCceEEeCCCCccchHHHHHHH------hhcCCCCCCc
Q 010475 453 QCYICLLEYEE-------GDSVRVLPCHHEFHKTCVDKWL------KEIHRVCPLC 495 (509)
Q Consensus 453 eCpICLEeFee-------gD~VrvLPCgHvFH~eCIdkWL------ke~~~TCPLC 495 (509)
.|.||+..-.. ++.+..-.|+..||..|+..++ .+..-.||.|
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C 58 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIEC 58 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGG
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCcccc
Confidence 59999876421 2234455599999999997652 2334456666
No 106
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.72 E-value=2.9 Score=34.02 Aligned_cols=45 Identities=22% Similarity=0.535 Sum_probs=29.1
Q ss_pred ccceecccccCCCceEEeCCCCccchHHHHHHHhhc----CCCCCCccc
Q 010475 453 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI----HRVCPLCRG 497 (509)
Q Consensus 453 eCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~----~~TCPLCRa 497 (509)
.|.||...-..++.+..=-|...||..|+.+=|... .=.||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 688888643333233333499999999998655431 236999965
No 107
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=46.69 E-value=15 Score=33.28 Aligned_cols=45 Identities=27% Similarity=0.525 Sum_probs=30.9
Q ss_pred CccccceecccccCCCceEEeCCCCccchHHHHHHHh----------hcCCCCCCccc
Q 010475 450 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLK----------EIHRVCPLCRG 497 (509)
Q Consensus 450 e~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLk----------e~~~TCPLCRa 497 (509)
.+..|.||-+. |+-+..=.|...||..||.+=|. ...-.||+|+.
T Consensus 62 ~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 34679999874 33233334999999999997652 12346999974
No 108
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=46.11 E-value=4.3 Score=40.83 Aligned_cols=51 Identities=18% Similarity=0.408 Sum_probs=0.0
Q ss_pred CccccceecccccCCCc-eEEeCCCCccchHHHHHHHh------hcCCCCCCcccCcC
Q 010475 450 EVAQCYICLLEYEEGDS-VRVLPCHHEFHKTCVDKWLK------EIHRVCPLCRGDIC 500 (509)
Q Consensus 450 e~eeCpICLEeFeegD~-VrvLPCgHvFH~eCIdkWLk------e~~~TCPLCRa~V~ 500 (509)
+...|.+|...|..-.. --+-.||++||..|...++. ...++|-.|-..+.
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELK 431 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHHH
Confidence 34579999999864321 22334999999999987652 12467888876554
No 109
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=44.54 E-value=5 Score=34.21 Aligned_cols=45 Identities=27% Similarity=0.620 Sum_probs=29.7
Q ss_pred ccceecccccCCCc-eEEeCCCCccchHHHHHHHhhc---CCCCCCccc
Q 010475 453 QCYICLLEYEEGDS-VRVLPCHHEFHKTCVDKWLKEI---HRVCPLCRG 497 (509)
Q Consensus 453 eCpICLEeFeegD~-VrvLPCgHvFH~eCIdkWLke~---~~TCPLCRa 497 (509)
.|.||...-..++. +..--|...||..|+..-|.+. .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 58888864222223 3333499999999998766532 347999975
No 110
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.11 E-value=1.8 Score=36.16 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=32.6
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhh---cCCCCCCcccC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE---IHRVCPLCRGD 498 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke---~~~TCPLCRa~ 498 (509)
.+...|.||...-..+..+..=-|...||..|+..=|.. ..-.||.|...
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 345579999886533223333349999999999854432 13359999753
No 111
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=43.06 E-value=3.7 Score=39.97 Aligned_cols=46 Identities=28% Similarity=0.628 Sum_probs=26.6
Q ss_pred ccceecccccCCCceEEeCCCCccchHHHHHHHhhc----CCCCCCcccC
Q 010475 453 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI----HRVCPLCRGD 498 (509)
Q Consensus 453 eCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~----~~TCPLCRa~ 498 (509)
.|.||...-..++.+..=-|...||..|+.+=|... .=.||.|..+
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 588887653333333333499999999999655431 2359999753
No 112
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=42.70 E-value=15 Score=38.24 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=32.6
Q ss_pred cccceecccccCCCceEEeCCCCc--cchHHHHHHHhh-cCCCCCCcccCcCCCC
Q 010475 452 AQCYICLLEYEEGDSVRVLPCHHE--FHKTCVDKWLKE-IHRVCPLCRGDICKPD 503 (509)
Q Consensus 452 eeCpICLEeFeegD~VrvLPCgHv--FH~eCIdkWLke-~~~TCPLCRa~V~e~d 503 (509)
..|||=+..+..+ ++-..|.|. |...-+.....+ ..-.||+|...+...+
T Consensus 250 L~CPlS~~ri~~P--vRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~d 302 (371)
T 3i2d_A 250 LQCPISYTRMKYP--SKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALEN 302 (371)
T ss_dssp SBCTTTSSBCSSE--EEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGG
T ss_pred ecCCCcccccccc--CcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHH
Confidence 4699888877664 777789998 444433333322 2456999988775443
No 113
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=40.15 E-value=10 Score=33.80 Aligned_cols=34 Identities=24% Similarity=0.468 Sum_probs=24.1
Q ss_pred CCccccceeccccc-CCC-ceEEeCCCCccchHHHH
Q 010475 449 EEVAQCYICLLEYE-EGD-SVRVLPCHHEFHKTCVD 482 (509)
Q Consensus 449 ee~eeCpICLEeFe-egD-~VrvLPCgHvFH~eCId 482 (509)
.+...|.+|...|. ... .....-|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 34568999999994 322 34455599999998844
No 114
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=39.65 E-value=18 Score=37.45 Aligned_cols=50 Identities=16% Similarity=0.357 Sum_probs=33.1
Q ss_pred cccceecccccCCCceEEeCCCCc--cchHHHHHHHhh-cCCCCCCcccCcCCCC
Q 010475 452 AQCYICLLEYEEGDSVRVLPCHHE--FHKTCVDKWLKE-IHRVCPLCRGDICKPD 503 (509)
Q Consensus 452 eeCpICLEeFeegD~VrvLPCgHv--FH~eCIdkWLke-~~~TCPLCRa~V~e~d 503 (509)
..|+|=+..+..+ ++-..|.|. |...=+..+.++ ..-.||+|.+.+...+
T Consensus 216 L~CPlS~~ri~~P--~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~d 268 (360)
T 4fo9_A 216 LMCPLGKMRLTIP--CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYES 268 (360)
T ss_dssp SBCTTTCSBCSSE--EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGG
T ss_pred eeCCCccceeccC--CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHH
Confidence 4699888777664 677779998 555444443332 2346999998775443
No 115
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=38.61 E-value=3.2 Score=33.90 Aligned_cols=46 Identities=28% Similarity=0.628 Sum_probs=26.9
Q ss_pred ccceecccccCCCceEEeCCCCccchHHHHHHHhhc---C-CCCCCcccC
Q 010475 453 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI---H-RVCPLCRGD 498 (509)
Q Consensus 453 eCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~---~-~TCPLCRa~ 498 (509)
.|.||...-..+..+..=-|...||..|+..-|... . -.||.|+.+
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 356665543222112222389999999999766531 2 469999753
No 116
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=38.42 E-value=4.2 Score=32.33 Aligned_cols=46 Identities=28% Similarity=0.628 Sum_probs=27.4
Q ss_pred ccceecccccCCCceEEeCCCCccchHHHHHHHhhc----CCCCCCcccC
Q 010475 453 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI----HRVCPLCRGD 498 (509)
Q Consensus 453 eCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~----~~TCPLCRa~ 498 (509)
.|.||...-..++.+..=-|...||..|+..=|.+. .=.||.|+.+
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 456776542222222222399999999998655432 3369999753
No 117
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=36.00 E-value=59 Score=27.58 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=28.5
Q ss_pred ccccceecccccCCCceEEeC--CCCccchHHHHHHHhh
Q 010475 451 VAQCYICLLEYEEGDSVRVLP--CHHEFHKTCVDKWLKE 487 (509)
Q Consensus 451 ~eeCpICLEeFeegD~VrvLP--CgHvFH~eCIdkWLke 487 (509)
...|.+|.+.+++..-| +-| =.|.||..|-...++.
T Consensus 15 ~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHH
T ss_pred eeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHh
Confidence 45799999998775444 444 5799999999999974
No 118
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=34.77 E-value=25 Score=31.46 Aligned_cols=45 Identities=29% Similarity=0.577 Sum_probs=29.5
Q ss_pred CccccceecccccCCCceEEeCCCCccchHHHHHH-----Hhhc-----CCCCCCccc
Q 010475 450 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKW-----LKEI-----HRVCPLCRG 497 (509)
Q Consensus 450 e~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkW-----Lke~-----~~TCPLCRa 497 (509)
.+..|.||-+. ++-+-.=.|-..||..||.+- |.+. .-.|++|..
T Consensus 56 ~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 34569999865 222222238999999999975 3222 347999964
No 119
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=33.42 E-value=8 Score=41.11 Aligned_cols=44 Identities=23% Similarity=0.429 Sum_probs=29.1
Q ss_pred cceecccccCCC-ceEEeCCCCccchHHHHHHHhh----cCCCCCCccc
Q 010475 454 CYICLLEYEEGD-SVRVLPCHHEFHKTCVDKWLKE----IHRVCPLCRG 497 (509)
Q Consensus 454 CpICLEeFeegD-~VrvLPCgHvFH~eCIdkWLke----~~~TCPLCRa 497 (509)
..||...+..+. .+.+--|.-.||..|+.---.. .+..||.|+.
T Consensus 39 yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 39 YCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp ETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred EEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 349988875333 3444459999999998532221 2468999974
No 120
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=32.21 E-value=5.4 Score=30.76 Aligned_cols=42 Identities=31% Similarity=0.637 Sum_probs=26.6
Q ss_pred cccceecccccCCCceEEeC--CC-CccchHHHHHHHhh---cCCCCCCccc
Q 010475 452 AQCYICLLEYEEGDSVRVLP--CH-HEFHKTCVDKWLKE---IHRVCPLCRG 497 (509)
Q Consensus 452 eeCpICLEeFeegD~VrvLP--Cg-HvFH~eCIdkWLke---~~~TCPLCRa 497 (509)
.-| ||.... .++.+..=. |. ..||..|+. |.. .+-.||.|+.
T Consensus 10 ~yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 10 TYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp EET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred cEE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 346 898764 243233233 65 699999998 443 2457999964
No 121
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=31.45 E-value=5.4 Score=30.74 Aligned_cols=42 Identities=29% Similarity=0.622 Sum_probs=25.8
Q ss_pred cccceecccccCCCceEEeC--CC-CccchHHHHHHHhh---cCCCCCCccc
Q 010475 452 AQCYICLLEYEEGDSVRVLP--CH-HEFHKTCVDKWLKE---IHRVCPLCRG 497 (509)
Q Consensus 452 eeCpICLEeFeegD~VrvLP--Cg-HvFH~eCIdkWLke---~~~TCPLCRa 497 (509)
.-| ||..... +..+..=. |. ..||..|+. |.. .+-.||.|+.
T Consensus 11 ~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 11 TYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp EET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 346 8987642 32222223 44 689999998 543 2457999864
No 122
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=31.37 E-value=24 Score=29.10 Aligned_cols=50 Identities=24% Similarity=0.543 Sum_probs=32.7
Q ss_pred CccccceecccccCCCc-eEEeCCCCccchHHHHHHHh-----hcCCCCCCcccCc
Q 010475 450 EVAQCYICLLEYEEGDS-VRVLPCHHEFHKTCVDKWLK-----EIHRVCPLCRGDI 499 (509)
Q Consensus 450 e~eeCpICLEeFeegD~-VrvLPCgHvFH~eCIdkWLk-----e~~~TCPLCRa~V 499 (509)
+...|.+|...|..-.. --.-.||++||..|...++. ....+|-.|-..|
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 34579999999975432 22334999999999876542 1234676665544
No 123
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=31.05 E-value=15 Score=28.93 Aligned_cols=43 Identities=26% Similarity=0.607 Sum_probs=27.9
Q ss_pred cccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCc
Q 010475 452 AQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLC 495 (509)
Q Consensus 452 eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLC 495 (509)
..|.-|...|........-.|++.||.+| +..+-+.=..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 35999999985431122333999999999 33333323479988
No 124
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=30.90 E-value=23 Score=30.88 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=24.1
Q ss_pred ccccceecccccCCCc-eEEeCCCCccchHHHHHH
Q 010475 451 VAQCYICLLEYEEGDS-VRVLPCHHEFHKTCVDKW 484 (509)
Q Consensus 451 ~eeCpICLEeFeegD~-VrvLPCgHvFH~eCIdkW 484 (509)
...|.+|...|..-.. --.-.||++||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 4579999999975422 222349999999996653
No 125
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=30.11 E-value=37 Score=27.06 Aligned_cols=50 Identities=22% Similarity=0.411 Sum_probs=31.3
Q ss_pred CCccccceecccc-cCCCceEE-eCCCCccchHHHHHHHh-hcCCCCCCcccC
Q 010475 449 EEVAQCYICLLEY-EEGDSVRV-LPCHHEFHKTCVDKWLK-EIHRVCPLCRGD 498 (509)
Q Consensus 449 ee~eeCpICLEeF-eegD~Vrv-LPCgHvFH~eCIdkWLk-e~~~TCPLCRa~ 498 (509)
.....|.||...- ..++.+.. =.|.-.||..|+..-+. +..-.||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4456799998764 22223322 23999999999875322 123469988654
No 126
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=29.41 E-value=13 Score=29.52 Aligned_cols=46 Identities=26% Similarity=0.489 Sum_probs=30.1
Q ss_pred ccceecccccCCCc-eEEeCCCCccchHHHHHHHhh----cCCCCCCcccC
Q 010475 453 QCYICLLEYEEGDS-VRVLPCHHEFHKTCVDKWLKE----IHRVCPLCRGD 498 (509)
Q Consensus 453 eCpICLEeFeegD~-VrvLPCgHvFH~eCIdkWLke----~~~TCPLCRa~ 498 (509)
.-.||...+..+.. |..-.|.-.||..|+.---.. ....||.|+..
T Consensus 11 ~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 11 VYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 34489887654333 444459999999999543221 25689999764
No 127
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=29.26 E-value=19 Score=31.04 Aligned_cols=50 Identities=24% Similarity=0.525 Sum_probs=31.5
Q ss_pred CCccccceecccccCCCceEEe--CCCCccchHHHHHHHhh---cCCCCCCcccCcCCCC
Q 010475 449 EEVAQCYICLLEYEEGDSVRVL--PCHHEFHKTCVDKWLKE---IHRVCPLCRGDICKPD 503 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvL--PCgHvFH~eCIdkWLke---~~~TCPLCRa~V~e~d 503 (509)
..+..|.||.+ .++.+..= .|...||..|+. |.. ..-.||.|.-.+..+.
T Consensus 13 ~~~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k~ 67 (107)
T 4gne_A 13 MHEDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSSA 67 (107)
T ss_dssp SSCSSCTTTCC---CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCSB
T ss_pred CCCCCCCcCCC---CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCCC
Confidence 34557999983 23222222 388999999997 653 1235998876665543
No 128
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=29.19 E-value=29 Score=28.12 Aligned_cols=54 Identities=19% Similarity=0.313 Sum_probs=34.6
Q ss_pred CCccccceecccccCCCc-eEEeCCCCccchHHHHHHHh-------hcCCCCCCcccCcCCC
Q 010475 449 EEVAQCYICLLEYEEGDS-VRVLPCHHEFHKTCVDKWLK-------EIHRVCPLCRGDICKP 502 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~-VrvLPCgHvFH~eCIdkWLk-------e~~~TCPLCRa~V~e~ 502 (509)
.+...|.+|...|..-.. --.-.||++||..|....+. +...+|-.|-..+...
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~~ 80 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALRSS 80 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHHTS
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHhhc
Confidence 344579999999976432 22234999999999766431 1134677776655443
No 129
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=28.91 E-value=27 Score=28.13 Aligned_cols=51 Identities=27% Similarity=0.502 Sum_probs=31.9
Q ss_pred CccccceecccccCCCc-eEEeCCCCccchHHHHHHHh-----hcCCCCCCcccCcC
Q 010475 450 EVAQCYICLLEYEEGDS-VRVLPCHHEFHKTCVDKWLK-----EIHRVCPLCRGDIC 500 (509)
Q Consensus 450 e~eeCpICLEeFeegD~-VrvLPCgHvFH~eCIdkWLk-----e~~~TCPLCRa~V~ 500 (509)
+...|.+|...|..-.. --.-.||.+||..|....+. ....+|-.|-..|.
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 74 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLL 74 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTT
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHH
Confidence 44579999999975422 12234999999999765431 11235666655443
No 130
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=28.28 E-value=28 Score=28.69 Aligned_cols=51 Identities=18% Similarity=0.413 Sum_probs=32.6
Q ss_pred CCccccceecccccCCCc-eEEeCCCCccchHHHHHHHh------hcCCCCCCcccCc
Q 010475 449 EEVAQCYICLLEYEEGDS-VRVLPCHHEFHKTCVDKWLK------EIHRVCPLCRGDI 499 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~-VrvLPCgHvFH~eCIdkWLk------e~~~TCPLCRa~V 499 (509)
.+...|.+|...|..-.. --.-.||++||..|....+. +...+|-.|-..+
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l 64 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTIL 64 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHH
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHH
Confidence 345579999999975422 12234999999999765331 1235677775544
No 131
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=28.07 E-value=7.4 Score=32.75 Aligned_cols=47 Identities=23% Similarity=0.441 Sum_probs=29.7
Q ss_pred ccceecccccCCCceEEeCCCCccchHHHHHHHhh---cCCCCCCcccCc
Q 010475 453 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE---IHRVCPLCRGDI 499 (509)
Q Consensus 453 eCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke---~~~TCPLCRa~V 499 (509)
.|.||...-.+...+..-.|...||..|+.+=|.. ..-.||.|..-.
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICI 105 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcC
Confidence 57777765333222333349999999999865542 234699996643
No 132
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.29 E-value=30 Score=27.92 Aligned_cols=35 Identities=14% Similarity=0.349 Sum_probs=24.2
Q ss_pred CCccccceecccccCCCc-eEEeCCCCccchHHHHH
Q 010475 449 EEVAQCYICLLEYEEGDS-VRVLPCHHEFHKTCVDK 483 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~-VrvLPCgHvFH~eCIdk 483 (509)
.+...|.+|...|..-.. --.-.||.+||..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 344579999999965321 12233999999999654
No 133
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.84 E-value=32 Score=26.30 Aligned_cols=39 Identities=21% Similarity=0.451 Sum_probs=25.5
Q ss_pred cccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcCC
Q 010475 452 AQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK 501 (509)
Q Consensus 452 eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e 501 (509)
..|+.|-+.+..++.+. .-+..||..| ..|-.|...|..
T Consensus 10 ~~C~~C~~~I~~~~~v~--a~~~~~H~~C---------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVS--SLGKDWHKFC---------LKCERCSKTLTP 48 (76)
T ss_dssp CBCTTTCCBCCTTTEEE--ETTEEEETTT---------CBCSSSCCBCCT
T ss_pred CCCcCCCCEeECCeEEE--ECCeEeeCCC---------CCCCCCCCccCC
Confidence 46888888877555443 3467778755 457777776654
No 134
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=26.26 E-value=25 Score=32.85 Aligned_cols=34 Identities=21% Similarity=0.387 Sum_probs=24.3
Q ss_pred ccccceecccccCCCc-eEEeCCCCccchHHHHHH
Q 010475 451 VAQCYICLLEYEEGDS-VRVLPCHHEFHKTCVDKW 484 (509)
Q Consensus 451 ~eeCpICLEeFeegD~-VrvLPCgHvFH~eCIdkW 484 (509)
...|.+|...|..-.. --.=.||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 4689999999975422 222249999999997653
No 135
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=26.25 E-value=6.7 Score=34.58 Aligned_cols=46 Identities=24% Similarity=0.525 Sum_probs=30.5
Q ss_pred cccceecccccCCCc-eEEeCCCCccchHHHHHHHhhcCCCCCCcccC
Q 010475 452 AQCYICLLEYEEGDS-VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGD 498 (509)
Q Consensus 452 eeCpICLEeFeegD~-VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~ 498 (509)
..|.+|-..|..-.. --.-.||.+||..|....... ..+|-.|-..
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~-vRVC~~C~~~ 66 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG-PRLCLLCQRF 66 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC-ceECHHHHHH
Confidence 479999999875322 223459999999997776653 6678777543
No 136
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=25.95 E-value=6.3 Score=29.28 Aligned_cols=42 Identities=21% Similarity=0.489 Sum_probs=26.3
Q ss_pred eecccccCCCceEEeCCCCccchHHHHHHHhh--cCCCCCCccc
Q 010475 456 ICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE--IHRVCPLCRG 497 (509)
Q Consensus 456 ICLEeFeegD~VrvLPCgHvFH~eCIdkWLke--~~~TCPLCRa 497 (509)
||...+..+..|..-.|...||..|+.---.. .+..||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 67666543233444459999999998632221 2567999864
No 137
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=25.14 E-value=3.2 Score=35.59 Aligned_cols=49 Identities=18% Similarity=0.418 Sum_probs=31.5
Q ss_pred ccceecccccCCCceEEeCCCCccchHHHHHHHhh---cCCCCCCcccCcCC
Q 010475 453 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE---IHRVCPLCRGDICK 501 (509)
Q Consensus 453 eCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke---~~~TCPLCRa~V~e 501 (509)
.|.||...-..++.+..-.|...||..|+..=|.. ..-.||.|...+.+
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 111 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKE 111 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchhhc
Confidence 58888775433333433449999999999864442 13359998765543
No 138
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=25.08 E-value=26 Score=26.83 Aligned_cols=43 Identities=12% Similarity=0.121 Sum_probs=24.9
Q ss_pred CccccceecccccCCCceEEeCCCCccch-HHHHHHHhhcCCCCCCccc
Q 010475 450 EVAQCYICLLEYEEGDSVRVLPCHHEFHK-TCVDKWLKEIHRVCPLCRG 497 (509)
Q Consensus 450 e~eeCpICLEeFeegD~VrvLPCgHvFH~-eCIdkWLke~~~TCPLCRa 497 (509)
+-..|..|...+..+.-. ..=+.+||. .|..+-+ ...|-.|..
T Consensus 26 ~CF~C~~C~~~L~~~~~~--~~~g~~yC~~~cy~~~f---~~~C~~C~~ 69 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHA--EHEGKPYCNHPCYSAMF---GPKGFGRGG 69 (76)
T ss_dssp TTCBCTTTCCBCCTTTEE--EETTEEEETTTHHHHHS---SCCCSSCCC
T ss_pred CCCCccccCccCCCCceE--CcCCeEeeCHHHHHHHh---CccCCCcCC
Confidence 445788887777654221 224566777 5765533 346777754
No 139
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=24.96 E-value=28 Score=32.97 Aligned_cols=50 Identities=20% Similarity=0.472 Sum_probs=32.4
Q ss_pred ccccceecccccCCCc-eEEeCCCCccchHHHHHHHh-------hcCCCCCCcccCcC
Q 010475 451 VAQCYICLLEYEEGDS-VRVLPCHHEFHKTCVDKWLK-------EIHRVCPLCRGDIC 500 (509)
Q Consensus 451 ~eeCpICLEeFeegD~-VrvLPCgHvFH~eCIdkWLk-------e~~~TCPLCRa~V~ 500 (509)
...|.+|...|..-.. --.-.||++||..|-..++. ...++|-.|-..+.
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~ 221 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLN 221 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHC
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhh
Confidence 4589999999975432 22234999999999775432 11346777755443
No 140
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=24.46 E-value=28 Score=30.36 Aligned_cols=12 Identities=33% Similarity=1.221 Sum_probs=11.1
Q ss_pred cchHHHHHHHhh
Q 010475 476 FHKTCVDKWLKE 487 (509)
Q Consensus 476 FH~eCIdkWLke 487 (509)
||..|+.+|++.
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999974
No 141
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=23.37 E-value=24 Score=27.84 Aligned_cols=48 Identities=21% Similarity=0.527 Sum_probs=30.8
Q ss_pred CCccccceecccccCCCceEEeCCCCccchHHHHHHHhh--cCCCCCCccc
Q 010475 449 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE--IHRVCPLCRG 497 (509)
Q Consensus 449 ee~eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke--~~~TCPLCRa 497 (509)
.+..-| ||...+..+..|..-.|...||..|+.--... ....||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 344568 99887653223444459999999998642211 2567999864
No 142
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=23.17 E-value=31 Score=30.10 Aligned_cols=12 Identities=50% Similarity=1.262 Sum_probs=11.0
Q ss_pred cchHHHHHHHhh
Q 010475 476 FHKTCVDKWLKE 487 (509)
Q Consensus 476 FH~eCIdkWLke 487 (509)
||..|+.+|+..
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999974
No 143
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=22.98 E-value=10 Score=29.58 Aligned_cols=42 Identities=33% Similarity=0.686 Sum_probs=26.1
Q ss_pred cccceecccccCCCceEEeC--CC-CccchHHHHHHHhh---cCCCCCCccc
Q 010475 452 AQCYICLLEYEEGDSVRVLP--CH-HEFHKTCVDKWLKE---IHRVCPLCRG 497 (509)
Q Consensus 452 eeCpICLEeFeegD~VrvLP--Cg-HvFH~eCIdkWLke---~~~TCPLCRa 497 (509)
.-| ||.... .++.+..=. |. ..||..||. |.. .+-.||.|+.
T Consensus 12 ~yC-~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 12 TYC-LCNQVS-YGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp EET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred cEE-ECCCCC-CCCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 346 898863 343222223 54 899999997 432 2457999965
No 144
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=22.82 E-value=17 Score=38.29 Aligned_cols=47 Identities=23% Similarity=0.405 Sum_probs=30.8
Q ss_pred cccceecccccCCCc-eEEeCCCCccchHHHHHHHhh----cCCCCCCcccC
Q 010475 452 AQCYICLLEYEEGDS-VRVLPCHHEFHKTCVDKWLKE----IHRVCPLCRGD 498 (509)
Q Consensus 452 eeCpICLEeFeegD~-VrvLPCgHvFH~eCIdkWLke----~~~TCPLCRa~ 498 (509)
....||...+..+.. +.+--|...||..|+.---.. .+..||.|+..
T Consensus 5 ~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~ 56 (447)
T 3kv4_A 5 PVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVL 56 (447)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHH
T ss_pred CeEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccc
Confidence 356689888754333 444459999999998422111 25789999764
No 145
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=22.74 E-value=44 Score=26.34 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=23.2
Q ss_pred cccceecccccCCCc-eEEeCCCCccchHHHHHH
Q 010475 452 AQCYICLLEYEEGDS-VRVLPCHHEFHKTCVDKW 484 (509)
Q Consensus 452 eeCpICLEeFeegD~-VrvLPCgHvFH~eCIdkW 484 (509)
..|.+|...|..-.. --.-.||.+||..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 479999999975422 122239999999997543
No 146
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=22.32 E-value=25 Score=27.59 Aligned_cols=47 Identities=17% Similarity=0.311 Sum_probs=30.9
Q ss_pred ccccceecccccCCC-ceEEeCCCCccchHHHHHHHh---hcCCCCCCcccC
Q 010475 451 VAQCYICLLEYEEGD-SVRVLPCHHEFHKTCVDKWLK---EIHRVCPLCRGD 498 (509)
Q Consensus 451 ~eeCpICLEeFeegD-~VrvLPCgHvFH~eCIdkWLk---e~~~TCPLCRa~ 498 (509)
...| ||...+..++ .|..-.|...||..|+.--.. .....||.|+..
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 3458 7988765554 344445999999999764321 125689999753
No 147
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.63 E-value=41 Score=26.41 Aligned_cols=38 Identities=24% Similarity=0.538 Sum_probs=25.4
Q ss_pred cccceecccccCCCceEEeCCCCccchHHHHHHHhhcCCCCCCcccCcC
Q 010475 452 AQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC 500 (509)
Q Consensus 452 eeCpICLEeFeegD~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~ 500 (509)
..|+-|-..+..++.+.. -+..||..| ..|-.|+..|.
T Consensus 16 ~~C~~C~~~I~~~~~v~a--~~~~wH~~C---------F~C~~C~~~L~ 53 (80)
T 2dj7_A 16 SHCAGCKEEIKHGQSLLA--LDKQWHVSC---------FKCQTCSVILT 53 (80)
T ss_dssp SCCTTTCCCCSSSCCEEE--TTEEECTTT---------CBCSSSCCBCS
T ss_pred CCCcCcCCeeCCCeEEEE--CCccccccc---------CCcCcCCCCcC
Confidence 468888888776655444 366788755 45777777664
No 148
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=20.51 E-value=38 Score=30.83 Aligned_cols=32 Identities=25% Similarity=0.518 Sum_probs=24.2
Q ss_pred CccccceecccccC--CCceEEeCCCCccchHHH
Q 010475 450 EVAQCYICLLEYEE--GDSVRVLPCHHEFHKTCV 481 (509)
Q Consensus 450 e~eeCpICLEeFee--gD~VrvLPCgHvFH~eCI 481 (509)
+...|.+|...|.. +......-|.|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 45689999998753 334555669999999996
Done!