Query 010476
Match_columns 509
No_of_seqs 204 out of 1044
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 00:58:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010476.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010476hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06899 lectin_legume_LecRK_Ar 100.0 1.9E-48 4.2E-53 382.1 23.8 220 22-254 1-232 (236)
2 PF00139 Lectin_legB: Legume l 100.0 2.5E-48 5.4E-53 380.2 20.3 222 21-253 1-234 (236)
3 cd01951 lectin_L-type legume l 100.0 1.3E-37 2.9E-42 300.7 23.5 201 31-254 13-221 (223)
4 cd07308 lectin_leg-like legume 99.9 3.4E-22 7.3E-27 193.5 23.1 192 32-253 20-214 (218)
5 cd06901 lectin_VIP36_VIPL VIP3 99.8 8E-20 1.7E-24 181.9 20.6 194 30-251 18-217 (248)
6 cd06902 lectin_ERGIC-53_ERGL E 99.8 1.5E-18 3.2E-23 170.5 22.6 195 32-252 22-219 (225)
7 PF03388 Lectin_leg-like: Legu 99.7 1.3E-16 2.7E-21 156.9 21.2 198 32-251 22-222 (229)
8 KOG3838 Mannose lectin ERGIC-5 99.7 5.1E-17 1.1E-21 167.9 18.7 219 3-251 7-249 (497)
9 cd06903 lectin_EMP46_EMP47 EMP 99.7 5.2E-16 1.1E-20 151.8 20.4 181 32-251 21-208 (215)
10 KOG3839 Lectin VIP36, involved 99.5 1.5E-13 3.3E-18 140.3 15.7 192 32-251 72-269 (351)
11 cd06900 lectin_VcfQ VcfQ bacte 98.9 1.2E-07 2.7E-12 94.3 19.4 95 43-139 30-126 (255)
12 KOG0600 Cdc2-related protein k 97.2 0.00026 5.7E-09 77.1 3.9 62 239-303 441-502 (560)
13 smart00282 LamG Laminin G doma 85.1 20 0.00044 31.4 12.0 27 182-208 57-83 (135)
14 cd00110 LamG Laminin G domain; 81.8 35 0.00077 29.9 12.6 26 183-208 76-101 (151)
15 KOG3514 Neurexin III-alpha [Si 66.2 36 0.00077 41.4 10.0 145 32-235 804-963 (1591)
16 PF01125 G10: G10 protein; In 56.9 16 0.00035 34.6 4.3 51 412-473 10-67 (145)
17 PF12248 Methyltransf_FA: Farn 40.8 81 0.0018 27.4 5.9 47 184-238 49-95 (102)
18 PHA03416 hypothetical E4 prote 24.4 24 0.00051 31.1 -0.2 21 475-499 1-21 (92)
19 PF02210 Laminin_G_2: Laminin 23.9 96 0.0021 26.1 3.5 26 183-208 50-75 (128)
20 PHA03417 E4 protein; Provision 22.0 34 0.00075 31.4 0.4 23 471-499 12-34 (118)
21 KOG3514 Neurexin III-alpha [Si 20.6 1.4E+03 0.029 29.0 12.7 49 182-235 517-565 (1591)
22 KOG1691 emp24/gp25L/p24 family 20.0 4.3E+02 0.0092 26.7 7.5 71 4-84 5-91 (210)
No 1
>cd06899 lectin_legume_LecRK_Arcelin_ConA legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor. This alignment model includes the legume lectins (also known as agglutinins), the arcelin (also known as phytohemagglutinin-L) family of lectin-like defense proteins, the LecRK family of lectin-like receptor kinases, concanavalinA (ConA), and an alpha-amylase inhibitor. Arcelin is a major seed glycoprotein discovered in kidney beans (Phaseolus vulgaris) that has insecticidal properties and protects the seeds from predation by larvae of various bruchids. Arcelin is devoid of monosaccharide binding properties and lacks a key metal-binding loop that is present in other members of this family. Phytohaemagglutinin (PHA) is a lectin found in plants, especially beans, that affects cell metabolism by inducing mitosis and by altering the permeability of the cell membrane to various proteins. PHA agglutinates most mammalian red blood cell types by bindin
Probab=100.00 E-value=1.9e-48 Score=382.13 Aligned_cols=220 Identities=42% Similarity=0.668 Sum_probs=195.0
Q ss_pred eeEEeCCCCC--CCeEEecCeEee-CCeEEeCCCC--CCcEEEEEeCcccccCCCC-----CeEEEEEEEEecCCCCCCC
Q 010476 22 LKFAFDGFNT--SKLLLYGSAKLD-SGAISLTQDT--TFSIGRALYHAKIPLRRTN-----SFETSFTFSITPYKGQLPG 91 (509)
Q Consensus 22 ~sFsf~sF~~--s~L~L~GdA~is-~g~LrLT~~~--~~s~Gra~Y~~PV~L~d~a-----SFsTsFtF~I~~~~~~~gg 91 (509)
++|+|++|+. ++|.++|+|.+. ++.|+||++. .+++|||||++||+||+.. +|+|+|+|.|.+.....+|
T Consensus 1 ~~f~f~~f~~~~~~l~l~G~A~~~~~~~i~LT~~~~~~~~~G~v~y~~pi~l~~~~~~~~~sFst~F~F~i~~~~~~~~g 80 (236)
T cd06899 1 LSFNFNGFSSDQSNLTLQGDATISSNGALQLTNDTSPASSVGRALYSKPVRLWDSTTGKVASFSTSFSFSITPPNPSLGG 80 (236)
T ss_pred CceecCCCCCCCCCEEEecceEcCCCCeEEecCCCCCCcceEEEEeCCCEEeecCCCCCceeEEEEEEEEEEcCCCCCCC
Confidence 4799999986 799999999997 8999999998 8999999999999999863 8999999999986556799
Q ss_pred CceEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEEeccccCCCCCCCCCeeEEecCCCccccccccccccccC
Q 010476 92 HGLVFILVPSAGIQGAAASQHLGFLNRTNDGNPNNNVFGIEFDVFQNQEFNDINNNHVGLNVNSLTSLAAYEAGYWFQDN 171 (509)
Q Consensus 92 DGLAFvL~p~~~~p~gs~Gg~LGL~n~t~~gn~~n~~VAVEFDT~~N~~~~DP~~nHVGIdVNSi~S~~t~~~~~~~~~~ 171 (509)
|||||||+|+...+.+..|++|||++.++.+.++++.||||||||+|.+++||+++|||||+|++.|..+. +|..
T Consensus 81 dGlAF~i~~~~~~~~~~~G~~lG~~~~~~~~~~~~~~vAVEFDT~~n~~~~D~~~nHigIdvn~~~S~~~~---~~~~-- 155 (236)
T cd06899 81 DGLAFFLAPTDSLPPASSGGYLGLFNSSNNGNSSNHIVAVEFDTFQNPEFGDPDDNHVGIDVNSLVSVKAG---YWDD-- 155 (236)
T ss_pred CeEEEEEecCCCCCCCCCcceeeeecCCCCCCcccceEEEEeecccCcccCCCCCCeEEEEcCCcccceee---cccc--
Confidence 99999999987555578899999998877666788999999999999988899999999999998776554 3532
Q ss_pred cCCccccccceeccCCceEEEEEEEe--CCeEEEEEEeCCCCCCCCceeEEEcccCcccCcceeEeeeecccceeeccee
Q 010476 172 QNKTNWHFHELKLNNGKIYRVWIDYK--DSFLSVSIAPAKMKKPLWPLLNVFIDLSDFFLDEMQGGSKSQRVDLERRGTR 249 (509)
Q Consensus 172 ~g~~~~s~~~~~L~dG~~~~VwIdY~--s~~LsV~L~~~~~~kP~~plLs~~VDLs~vLpe~vyVGFSASTG~l~q~Hdr 249 (509)
..++|.+|+.++|||+|+ +++|+|+|+..+..+|..|+|++.+||+.+|+++||||||||||+..|.|++
T Consensus 156 --------~~~~l~~g~~~~v~I~Y~~~~~~L~V~l~~~~~~~~~~~~ls~~vdL~~~l~~~~~vGFSasTG~~~~~h~i 227 (236)
T cd06899 156 --------DGGKLKSGKPMQAWIDYDSSSKRLSVTLAYSGVAKPKKPLLSYPVDLSKVLPEEVYVGFSASTGLLTELHYI 227 (236)
T ss_pred --------ccccccCCCeEEEEEEEcCCCCEEEEEEEeCCCCCCcCCEEEEeccHHHhCCCceEEEEEeEcCCCcceEEE
Confidence 234578999999999995 6899999998877789999999999999999999999999999999999999
Q ss_pred eeccc
Q 010476 250 ESQAI 254 (509)
Q Consensus 250 es~a~ 254 (509)
.++-+
T Consensus 228 ~sWsF 232 (236)
T cd06899 228 LSWSF 232 (236)
T ss_pred EEEEE
Confidence 88643
No 2
>PF00139 Lectin_legB: Legume lectin domain; InterPro: IPR001220 Legume lectins are one of the largest lectin families with more than 70 lectins reported. Leguminous plant lectins resemble each other in their physicochemical properties although they differ in their carbohydrate specificities. They consist of two or four subunits with relative molecular mass of 30 kDa and each subunit has one carbohydrate-binding site. The interaction with sugars requires tightly bound calcium and manganese ions. The structural similarities of these lectins are reported by the primary structural analyses and X-ray crystallographic studies. X-ray studies have shown that the folding of the polypeptide chains in the region of the carbohydrate-binding sites is also similar, despite differences in the primary sequences. The carbohydrate-binding sites of these lectins consist of two conserved amino acids on beta pleated sheets. One of these loops contains transition metals, calcium and manganese, which keep the amino acid residues of the sugar-binding site at the required positions. Amino acid sequences of this loop play an important role in the carbohydrate-binding specificities of these lectins. These lectins bind either glucose/mannose or galactose. The exact function of legume lectins is not known but they may be involved in the attachment of nitrogen-fixing bacteria to legumes and in the protection against pathogens. Some legume lectins are proteolytically processed to produce two chains, beta (which corresponds to the N-terminal) and alpha (C-terminal) (IPR000985 from INTERPRO). The lectin concanavalin A (conA) from jack bean is exceptional in that the two chains are transposed and ligated (by formation of a new peptide bond). The N terminus of mature conA thus corresponds to that of the alpha chain and the C terminus to the beta chain.; GO: 0005488 binding; PDB: 1VLN_B 2GDF_C 2JE9_C 2JEC_C 1DGL_B 2P37_B 2CWM_A 2P34_D 2OW4_A 3IPV_B ....
Probab=100.00 E-value=2.5e-48 Score=380.23 Aligned_cols=222 Identities=36% Similarity=0.595 Sum_probs=191.3
Q ss_pred ceeEEeCCC-CCCCeEEecCeEe-eCCeEEeCCCCC-CcEEEEEeCcccccCCCC-----CeEEEEEEEEecC--CCCCC
Q 010476 21 ALKFAFDGF-NTSKLLLYGSAKL-DSGAISLTQDTT-FSIGRALYHAKIPLRRTN-----SFETSFTFSITPY--KGQLP 90 (509)
Q Consensus 21 ~~sFsf~sF-~~s~L~L~GdA~i-s~g~LrLT~~~~-~s~Gra~Y~~PV~L~d~a-----SFsTsFtF~I~~~--~~~~g 90 (509)
.++|+|++| +..+|++.|+|.+ .++.|+||++.. +++|||||++||+|||.. +|+|+|+|+|... ....+
T Consensus 1 ~~~F~~~~F~~~~~~~l~G~A~~~~~~~l~LT~~~~~~~~G~~~y~~pi~l~d~~~~~~~sF~t~F~f~i~~~~~~~~~~ 80 (236)
T PF00139_consen 1 SVSFSFPSFSNSSNLTLNGDASISSNGSLQLTPDSTNNQAGRAWYNNPIQLWDSTTGNVASFSTSFSFSITNGPGSSNNG 80 (236)
T ss_dssp EEEEEESSBTTGTTEEEEETEEEETTSEEESSTBETSSEEEEEEESSEEESBETTTTEBEEEEEEEEEEEEESSSSSSS-
T ss_pred CceEEcCCCCCCCceEEEeeEEeccCCeEEcCCCCCCCcEEEEEECCcEEEeCCCCcceeeeeeEEEEEEeccCCCCccC
Confidence 478999999 4689999999999 789999999988 999999999999999863 7999999999642 45689
Q ss_pred CCceEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEEeccccCCCCCCCCCeeEEecCCCcccccccccccccc
Q 010476 91 GHGLVFILVPSAGIQGAAASQHLGFLNRTNDGNPNNNVFGIEFDVFQNQEFNDINNNHVGLNVNSLTSLAAYEAGYWFQD 170 (509)
Q Consensus 91 gDGLAFvL~p~~~~p~gs~Gg~LGL~n~t~~gn~~n~~VAVEFDT~~N~~~~DP~~nHVGIdVNSi~S~~t~~~~~~~~~ 170 (509)
||||||||+|+...+.++.|++||+++..+++.+++++||||||||+|.+++||+.+||||++|++.+..+.+++++.
T Consensus 81 ~dGlAFvi~~~~~~~~~~~g~~lG~~~~~~~~~~~~~~vAVEFDT~~N~~~~d~~~nHIgI~~n~~~s~~~~~~~~~~-- 158 (236)
T PF00139_consen 81 GDGLAFVIQPDPNLPGGSSGGYLGLFNSSTDGNGINNSVAVEFDTYKNPEYNDPDDNHIGIDVNSVVSNKTASAGYYS-- 158 (236)
T ss_dssp BEEEEEEEEETTSSTTTSSGGGTTTSSSSSTTGGGGCEEEEEEETSTCGGGTTTSSSEEEEEESSSSESEEEE----E--
T ss_pred CCceEEEEecCcccccCCCCCccCccccccCCCccCcEEEEEEeeeecccccccCCCEEEEECCCCcccccccccccc--
Confidence 999999999998666667999999998777666688999999999999999999999999999999988776655442
Q ss_pred CcCCccccccceeccCCceEEEEEEEe--CCeEEEEEEeCCCCCCCCceeEEEcccCcccCcceeEeeeecccceeecce
Q 010476 171 NQNKTNWHFHELKLNNGKIYRVWIDYK--DSFLSVSIAPAKMKKPLWPLLNVFIDLSDFFLDEMQGGSKSQRVDLERRGT 248 (509)
Q Consensus 171 ~~g~~~~s~~~~~L~dG~~~~VwIdY~--s~~LsV~L~~~~~~kP~~plLs~~VDLs~vLpe~vyVGFSASTG~l~q~Hd 248 (509)
....+|.+|+.+.|||+|+ +++|+|+++... .+|..++|++.+||+.+|+++||||||||||..+|.|+
T Consensus 159 --------~~~~~l~~g~~~~v~I~Yd~~~~~L~V~l~~~~-~~~~~~~l~~~vdL~~~l~~~v~vGFsasTG~~~~~h~ 229 (236)
T PF00139_consen 159 --------SPSFSLSDGKWHTVWIDYDASTKRLSVYLDDNS-SKPSSPVLSVNVDLSAVLPEQVYVGFSASTGGSYQTHD 229 (236)
T ss_dssp --------EEEHHHGTTSEEEEEEEEETTTTEEEEEEEETT-TTSEEEEEEEE--HHHHSCSEEEEEEEEEESSSSEEEE
T ss_pred --------cccccccCCcEEEEEEEEcCCccEEEEEEeccc-CCCcceeEEEEEchHHhcCCCcEEEEEeecCCCcceEE
Confidence 2356789999999999996 589999999874 68889999999999999999999999999999999999
Q ss_pred eeecc
Q 010476 249 RESQA 253 (509)
Q Consensus 249 res~a 253 (509)
+.++-
T Consensus 230 I~sW~ 234 (236)
T PF00139_consen 230 ILSWS 234 (236)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88764
No 3
>cd01951 lectin_L-type legume lectins. The L-type (legume-type) lectins are a highly diverse family of carbohydrate binding proteins that generally display no enzymatic activity toward the sugars they bind. This family includes arcelin, concanavalinA, the lectin-like receptor kinases, the ERGIC-53/VIP36/EMP46 type1 transmembrane proteins, and an alpha-amylase inhibitor. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.
Probab=100.00 E-value=1.3e-37 Score=300.71 Aligned_cols=201 Identities=25% Similarity=0.274 Sum_probs=165.0
Q ss_pred CCCeEEecCeEee--CCeEEeCCCCCCcEEEEEeCcccccCCCCCeEEEEEEEEecCCCCCCCCceEEEEccCCCCCCCC
Q 010476 31 TSKLLLYGSAKLD--SGAISLTQDTTFSIGRALYHAKIPLRRTNSFETSFTFSITPYKGQLPGHGLVFILVPSAGIQGAA 108 (509)
Q Consensus 31 ~s~L~L~GdA~is--~g~LrLT~~~~~s~Gra~Y~~PV~L~d~aSFsTsFtF~I~~~~~~~ggDGLAFvL~p~~~~p~gs 108 (509)
.++|.++|+|.+. ++.|+||++..+++|+|||++||++|. +|+|+|+|+|.... ..+||||||+|++....+.+.
T Consensus 13 ~~~~~~~G~A~~~~~~~~l~Lt~~~~~~~G~~~~~~~i~~~~--~F~~~F~f~i~~~~-~~~gdG~aF~l~~~~~~~~~~ 89 (223)
T cd01951 13 QSNWQLNGSATLTTDSGVLRLTPDTGNQAGSAWYKTPIDLSK--DFTTTFKFYLGTKG-TNGADGIAFVLQNDPAGALGG 89 (223)
T ss_pred hhhcEEcccEEecCCCCEEEECCCCCCcEEEEEECCcEeccC--CEEEEEEEEEeCCC-CCCCCcEEEEEecCCCCcccc
Confidence 4689999999997 899999999999999999999999984 79999999998754 579999999999986444444
Q ss_pred CC--CCCCCCCCCCCCCCCCcEEEEEEeccccCCCCCCCCCeeEEecCCCcccc--ccccccccccCcCCccccccceec
Q 010476 109 AS--QHLGFLNRTNDGNPNNNVFGIEFDVFQNQEFNDINNNHVGLNVNSLTSLA--AYEAGYWFQDNQNKTNWHFHELKL 184 (509)
Q Consensus 109 ~G--g~LGL~n~t~~gn~~n~~VAVEFDT~~N~~~~DP~~nHVGIdVNSi~S~~--t~~~~~~~~~~~g~~~~s~~~~~L 184 (509)
.| ++||+. ..++.+|||||||+|.+++||+.+||||++|+..+.. ..++.++.. ....
T Consensus 90 ~g~~~~lG~~-------~~~~~~aVefDT~~N~~~~dp~~~higi~~n~~~~~~~~~~~~~~~~~-----------~~~~ 151 (223)
T cd01951 90 GGGGGGLGYG-------GIGNSVAVEFDTYKNDDNNDPNGNHISIDVNGNGNNTALATSLGSASL-----------PNGT 151 (223)
T ss_pred CCCCCccCcc-------ccCCeEEEEEeccccCCCCCCCCCEEEEEcCCCCCCcccccccceeeC-----------CCcc
Confidence 44 788874 3578999999999999888999999999999987541 111111111 1111
Q ss_pred cCCceEEEEEEEe--CCeEEEEEEeCCCCCCCCceeEEEcccCcccCcceeEeeeecccceeecceeeeccc
Q 010476 185 NNGKIYRVWIDYK--DSFLSVSIAPAKMKKPLWPLLNVFIDLSDFFLDEMQGGSKSQRVDLERRGTRESQAI 254 (509)
Q Consensus 185 ~dG~~~~VwIdY~--s~~LsV~L~~~~~~kP~~plLs~~VDLs~vLpe~vyVGFSASTG~l~q~Hdres~a~ 254 (509)
.+|+.++|||+|+ +++|+|+|..... |..++++..+||..+++++||||||||||+.+|.|++.++.+
T Consensus 152 ~~g~~~~v~I~Y~~~~~~L~v~l~~~~~--~~~~~l~~~~~l~~~~~~~~yvGFTAsTG~~~~~h~V~~wsf 221 (223)
T cd01951 152 GLGNEHTVRITYDPTTNTLTVYLDNGST--LTSLDITIPVDLIQLGPTKAYFGFTASTGGLTNLHDILNWSF 221 (223)
T ss_pred CCCCEEEEEEEEeCCCCEEEEEECCCCc--cccccEEEeeeecccCCCcEEEEEEcccCCCcceeEEEEEEe
Confidence 2389999999996 6999999986543 667899999999999999999999999999999999887654
No 4
>cd07308 lectin_leg-like legume-like lectins: ERGIC-53, ERGL, VIP36, VIPL, EMP46, and EMP47. The legume-like (leg-like) lectins are eukaryotic intracellular sugar transport proteins with a carbohydrate recognition domain similar to that of the legume lectins. This domain binds high-mannose-type oligosaccharides for transport from the endoplasmic reticulum to the Golgi complex. These leg-like lectins include ERGIC-53, ERGL, VIP36, VIPL, EMP46, EMP47, and the UIP5 (ULP1-interacting protein 5) precursor protein. Leg-like lectins have different intracellular distributions and dynamics in the endoplasmic reticulum-Golgi system of the secretory pathway and interact with N-glycans of glycoproteins in a calcium-dependent manner, suggesting a role in glycoprotein sorting and trafficking. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "ba
Probab=99.90 E-value=3.4e-22 Score=193.50 Aligned_cols=192 Identities=21% Similarity=0.180 Sum_probs=136.8
Q ss_pred CCeEEecCeEeeCCeEEeCCCCCCcEEEEEeCcccccCCCCCeEEEEEEEEecCCCCCCCCceEEEEccCCCCCCCCCCC
Q 010476 32 SKLLLYGSAKLDSGAISLTQDTTFSIGRALYHAKIPLRRTNSFETSFTFSITPYKGQLPGHGLVFILVPSAGIQGAAASQ 111 (509)
Q Consensus 32 s~L~L~GdA~is~g~LrLT~~~~~s~Gra~Y~~PV~L~d~aSFsTsFtF~I~~~~~~~ggDGLAFvL~p~~~~p~gs~Gg 111 (509)
.+|.+.|+|.+.++.|+||++..++.|++||+.|+++. +|+|+|+|+|.+.. ..+||||||||+++.. ..|.
T Consensus 20 ~~w~~~G~a~~~~~~i~LT~~~~~~~G~~~~~~pi~~~---~F~~~f~F~i~~~~-~~~gdG~af~~~~~~~----~~g~ 91 (218)
T cd07308 20 GNWTVGGSTVITKNYIRLTPDVPSQSGSLWSRVPIPAK---DFEIEVEFSIHGGS-GLGGDGFAFWYTEEPG----SDGP 91 (218)
T ss_pred CCeEEcCCeEEeCCEEEeCCCCCCCEeEEEeCCCccCC---CEEEEEEEEEeCCC-CCCCCEEEEEEECCCC----CCCc
Confidence 58999999999999999999999999999999999994 69999999998753 4689999999998653 2345
Q ss_pred CCCCCCCCCCCCCCCcEEEEEEeccccCCCCCCCCCeeEEecCCCc-cccc-cccccccccCcCCccccccceeccC-Cc
Q 010476 112 HLGFLNRTNDGNPNNNVFGIEFDVFQNQEFNDINNNHVGLNVNSLT-SLAA-YEAGYWFQDNQNKTNWHFHELKLNN-GK 188 (509)
Q Consensus 112 ~LGL~n~t~~gn~~n~~VAVEFDT~~N~~~~DP~~nHVGIdVNSi~-S~~t-~~~~~~~~~~~g~~~~s~~~~~L~d-G~ 188 (509)
.+|.. ...+.+||||||+.|. +-..++|.+.+|.-. +... .. + .....+ ...+...+ +.
T Consensus 92 ~~G~~-------~~~~Glai~fdt~~n~---~~~~p~i~~~~Ndg~~~~~~~~d-~--~~~~~~-----~c~~~~~~~~~ 153 (218)
T cd07308 92 LFGGP-------DKFKGLAIFFDTYDND---GKGFPSISVFLNDGTKSYDYETD-G--EKLELA-----SCSLKFRNSNA 153 (218)
T ss_pred ccccC-------CCCCEEEEEEEcCCCC---CCCCCeEEEEEeCCCceecccCC-C--cccccc-----ceeEecccCCC
Confidence 66653 2467899999999985 334557777665422 1100 00 0 000000 01122222 57
Q ss_pred eEEEEEEEeCCeEEEEEEeCCCCCCCCceeEEEcccCcccCcceeEeeeecccceeecceeeecc
Q 010476 189 IYRVWIDYKDSFLSVSIAPAKMKKPLWPLLNVFIDLSDFFLDEMQGGSKSQRVDLERRGTRESQA 253 (509)
Q Consensus 189 ~~~VwIdY~s~~LsV~L~~~~~~kP~~plLs~~VDLs~vLpe~vyVGFSASTG~l~q~Hdres~a 253 (509)
..+++|.|..+.|.|.+.... +....++..++. ..+++.+||||||+||.+.+.|+.-+..
T Consensus 154 ~~~~~I~y~~~~l~v~i~~~~---~~~~~~c~~~~~-~~l~~~~y~G~sA~tg~~~d~~dIls~~ 214 (218)
T cd07308 154 PTTLRISYLNNTLKVDITYSE---GNNWKECFTVED-VILPSQGYFGFSAQTGDLSDNHDILSVH 214 (218)
T ss_pred CeEEEEEEECCEEEEEEeCCC---CCCccEEEEcCC-cccCCCCEEEEEeccCCCcCcEEEEEEE
Confidence 899999999889999997532 122333333332 2478899999999999999999987643
No 5
>cd06901 lectin_VIP36_VIPL VIP36 and VIPL type 1 transmembrane proteins, lectin domain. The vesicular integral protein of 36 kDa (VIP36) is a type 1 transmembrane protein of the mammalian early secretory pathway that acts as a cargo receptor transporting high mannose type glycoproteins between the Golgi and the endoplasmic reticulum (ER). Lectins of the early secretory pathway are involved in the selective transport of newly synthesized glycoproteins from the ER to the ER-Golgi intermediate compartment (ERGIC). The most prominent cycling lectin is the mannose-binding type1 membrane protein ERGIC-53, which functions as a cargo receptor to facilitate export of glycoproteins from the ER. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded she
Probab=99.85 E-value=8e-20 Score=181.94 Aligned_cols=194 Identities=19% Similarity=0.149 Sum_probs=133.9
Q ss_pred CCCCeEEecCeEeeCCeEEeCCCCCCcEEEEEeCcccccCCCCCeEEEEEEEEecCCCCCCCCceEEEEccCCCCCCCCC
Q 010476 30 NTSKLLLYGSAKLDSGAISLTQDTTFSIGRALYHAKIPLRRTNSFETSFTFSITPYKGQLPGHGLVFILVPSAGIQGAAA 109 (509)
Q Consensus 30 ~~s~L~L~GdA~is~g~LrLT~~~~~s~Gra~Y~~PV~L~d~aSFsTsFtF~I~~~~~~~ggDGLAFvL~p~~~~p~gs~ 109 (509)
...+|.+.|+|.+.++.|+||++.+++.|++||+.|+++. +|+++|+|+|.+.+...+|||||||++.+.. ..
T Consensus 18 ~i~~w~~~G~a~v~~~~IrLTp~~~~~~G~~w~~~p~~~~---~F~~~f~F~I~~~~~~~~GdGlAfw~t~~~~----~~ 90 (248)
T cd06901 18 SMPLWDFLGSTMVTSQYIRLTPDHQSKQGSIWNRVPCYLR---DWEMHVHFKVHGSGKNLFGDGFAIWYTKERM----QP 90 (248)
T ss_pred CCCCEEEcceEEEcCCeEEECCCCCCCEEEEeccCCccCC---CEEEEEEEEEeCCCCCCCCCEEEEEEEcCCC----cc
Confidence 3568999999999888999999998899999999999995 5999999999986556789999999998752 23
Q ss_pred CCCCCCCCCCCCCCCCCcEEEEEEeccccCCC-CCCCCCeeEEecCCCccccccccccccccCcCCc---cccccceec-
Q 010476 110 SQHLGFLNRTNDGNPNNNVFGIEFDVFQNQEF-NDINNNHVGLNVNSLTSLAAYEAGYWFQDNQNKT---NWHFHELKL- 184 (509)
Q Consensus 110 Gg~LGL~n~t~~gn~~n~~VAVEFDT~~N~~~-~DP~~nHVGIdVNSi~S~~t~~~~~~~~~~~g~~---~~s~~~~~L- 184 (509)
|..+|..+ ....+||.|||+.|..- .....+-|.+.+|.-. . .|+...+|.. ..+ ....
T Consensus 91 G~~fG~~~-------~f~Gl~I~~Dt~~n~~~~~~~~~P~i~~~~NDGt----~---~yd~~~Dg~~~~~~~C--~~~~r 154 (248)
T cd06901 91 GPVFGSKD-------NFHGLAIFFDTYSNQNGEHEHVHPYISAMVNNGS----L---SYDHDRDGTHTELAGC--SAPFR 154 (248)
T ss_pred CcccccCC-------CCceEEEEEECCCCCCCcccCCCceEEEEEcCCC----e---eecccCCCchhhcCce--eeecc
Confidence 44555432 45689999999998631 0122334545444311 1 0221111110 011 1122
Q ss_pred cCCceEEEEEEEeCCeEEEEEEeCCCCCCCCceeEEEcccCc-ccCcceeEeeeecccceeecceeee
Q 010476 185 NNGKIYRVWIDYKDSFLSVSIAPAKMKKPLWPLLNVFIDLSD-FFLDEMQGGSKSQRVDLERRGTRES 251 (509)
Q Consensus 185 ~dG~~~~VwIdY~s~~LsV~L~~~~~~kP~~plLs~~VDLs~-vLpe~vyVGFSASTG~l~q~Hdres 251 (509)
+.+...+++|.|....|.|.++..+... ...+++... .||...|+||||+||++.++|+.-+
T Consensus 155 n~~~~t~~rI~Y~~~~l~v~vd~~~~~~-----w~~Cf~~~~v~LP~~~yfGiSA~Tg~~sd~hdIls 217 (248)
T cd06901 155 NKDHDTFVAIRYSKGRLTVMTDIDGKNE-----WKECFDVTGVRLPTGYYFGASAATGDLSDNHDIIS 217 (248)
T ss_pred CCCCCeEEEEEEECCeEEEEEecCCCCc-----eeeeEEeCCeecCCCCEEEEEecCCCCCCcEEEEE
Confidence 2345678999998788999987543211 111233333 3788899999999999999999876
No 6
>cd06902 lectin_ERGIC-53_ERGL ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain. ERGIC-53 and ERGL, N-terminal carbohydrate recognition domain. ERGIC-53 and ERGL are eukaryotic mannose-binding type 1 transmembrane proteins of the early secretory pathway that transport newly synthesized glycoproteins from the endoplasmic reticulum (ER) to the ER-Golgi intermediate compartment (ERGIC). ERGIC-53 and ERGL have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. ERGIC-53 functions as a 'cargo receptor' to facilitate the export of glycoproteins with different characteristics from the ER, while the ERGIC-53-like protein (ERGL) which may act as a regulator of ERGIC-53. In mammals, ERGIC-53 forms a complex with MCFD2 (multi-coagulation factor deficiency 2) which then recruits blood coagulation factors V and VIII. Mutations in either MCFD2 or ERGIC-53 cause a mild form of inherite
Probab=99.82 E-value=1.5e-18 Score=170.55 Aligned_cols=195 Identities=19% Similarity=0.141 Sum_probs=137.2
Q ss_pred CCeEEecCeEeeCCeEEeCCCCCCcEEEEEeCcccccCCCCCeEEEEEEEEecCCCCCCCCceEEEEccCCCCCCCCCCC
Q 010476 32 SKLLLYGSAKLDSGAISLTQDTTFSIGRALYHAKIPLRRTNSFETSFTFSITPYKGQLPGHGLVFILVPSAGIQGAAASQ 111 (509)
Q Consensus 32 s~L~L~GdA~is~g~LrLT~~~~~s~Gra~Y~~PV~L~d~aSFsTsFtF~I~~~~~~~ggDGLAFvL~p~~~~p~gs~Gg 111 (509)
..|.+.|+|.+.++.|+||++.+++.|.+|.+.|+... +|+++|+|+|.+.. ..+|||||||++.+.. ..|+
T Consensus 22 ~~W~~~G~t~~~~~~IrLTp~~~~~~G~iw~~~~~~~~---~w~ie~~Fri~g~~-~~~gdG~a~W~t~~~~----~~G~ 93 (225)
T cd06902 22 PFWSHGGDAIASLEQVRLTPSLRSKKGSVWTKNPFSFE---NWEVEVTFRVTGRG-RIGADGLAIWYTKERG----EEGP 93 (225)
T ss_pred CceEecccEEecCCEEEECCCCCCCEEEEeeCCCcCCC---CEEEEEEEEEecCC-CCCCCEEEEEEECCCC----CCCC
Confidence 57999999999999999999999999999999999953 59999999998754 3678999999998642 2456
Q ss_pred CCCCCCCCCCCCCCCcEEEEEEeccccCCCCCCCCCeeEEecCCCccccccccccccccCcCCcc-ccccceecc-CCce
Q 010476 112 HLGFLNRTNDGNPNNNVFGIEFDVFQNQEFNDINNNHVGLNVNSLTSLAAYEAGYWFQDNQNKTN-WHFHELKLN-NGKI 189 (509)
Q Consensus 112 ~LGL~n~t~~gn~~n~~VAVEFDT~~N~~~~DP~~nHVGIdVNSi~S~~t~~~~~~~~~~~g~~~-~s~~~~~L~-dG~~ 189 (509)
.+|..+ ....+||.|||+.|.+ ....+.|.+.+|.-+ .. |+...++... .....+... ...+
T Consensus 94 ~~G~~~-------~f~Gl~I~~Dt~~n~~--~~~~p~i~~~~NDGt----~~---yd~~~D~~~~~~~~C~~~~rn~~~p 157 (225)
T cd06902 94 VFGSSD-------KWNGVGIFFDSFDNDG--KKNNPAILVVGNDGT----KS---YDHQNDGLTQALGSCLRDFRNKPYP 157 (225)
T ss_pred ccCCCC-------cccEEEEEEECCCCCC--CCCCcEEEEEECCCC----ee---ccccCCCcccccceEEEeccCCCCC
Confidence 666543 4678999999998853 334567766665421 10 1111001100 000112222 2467
Q ss_pred EEEEEEEeCCeEEEEEEeCCCCCCCCceeEEEcccCcc-cCcceeEeeeecccceeecceeeec
Q 010476 190 YRVWIDYKDSFLSVSIAPAKMKKPLWPLLNVFIDLSDF-FLDEMQGGSKSQRVDLERRGTRESQ 252 (509)
Q Consensus 190 ~~VwIdY~s~~LsV~L~~~~~~kP~~plLs~~VDLs~v-Lpe~vyVGFSASTG~l~q~Hdres~ 252 (509)
.+++|.|..+.|+|.++... .+.......++++..+ ||+..|+||||+||++.++||+-+-
T Consensus 158 ~~~rI~Y~~~~l~V~~d~~~--~~~~~~~~~Cf~~~~v~LP~~~yfGiSA~Tg~l~d~hDIls~ 219 (225)
T cd06902 158 VRAKITYYQNVLTVSINNGF--TPNKDDYELCTRVENMVLPPNGYFGVSAATGGLADDHDVLSF 219 (225)
T ss_pred eEEEEEEECCeEEEEEeCCc--CCCCCcccEEEecCCeeCCCCCEEEEEecCCCCCCcEeEEEE
Confidence 89999998888999997432 2222233445555553 7889999999999999999998763
No 7
>PF03388 Lectin_leg-like: Legume-like lectin family; InterPro: IPR005052 Lectins are structurally diverse proteins that bind to specific carbohydrates. This family includes the VIP36 and ERGIC-53 lectins. These two proteins were the first members of the family of animal lectins similar to the leguminous plant lectins []. The alignment for this family is towards the N terminus, where the similarity of VIP36 and ERGIC-53 is greatest. Although they have been identified as a family of animal lectins, this alignment also includes yeast sequences[]. ERGIC-53 is a 53kDa protein, localised to the intermediate region between the endoplasmic reticulum and the Golgi apparatus (ER-Golgi-Intermediate Compartment, ERGIC). It was identified as a calcium-dependent, mannose-specific lectin []. Its dysfunction has been associated with combined factors V and VIII deficiency, suggesting an important and substrate-specific role for ERGIC-53 in the glycoprotein-secreting pathway [,]. The L-type lectin-like domain has an overall globular shape composed of a beta-sandwich of two major twisted antiparallel beta-sheets. The beta-sandwich comprises a major concave beta-sheet and a minor convex beta-sheet, in a variation of the jelly roll fold [, , , ]. ; GO: 0016020 membrane; PDB: 3A4U_A 3LCP_B 2A6Z_A 2A71_C 2A70_B 2A6Y_A 2A6X_A 2A6W_B 2A6V_B 2E6V_B ....
Probab=99.75 E-value=1.3e-16 Score=156.93 Aligned_cols=198 Identities=22% Similarity=0.212 Sum_probs=127.6
Q ss_pred CCeEEecCeEeeCCeEEeCCCCCCcEEEEEeCcccccCCCCCeEEEEEEEEecCCCCCCCCceEEEEccCCCCCCCCCCC
Q 010476 32 SKLLLYGSAKLDSGAISLTQDTTFSIGRALYHAKIPLRRTNSFETSFTFSITPYKGQLPGHGLVFILVPSAGIQGAAASQ 111 (509)
Q Consensus 32 s~L~L~GdA~is~g~LrLT~~~~~s~Gra~Y~~PV~L~d~aSFsTsFtF~I~~~~~~~ggDGLAFvL~p~~~~p~gs~Gg 111 (509)
..|.+.|+|.+.++.|+||++.+++.|.+|.+.|++.. .|+.+|+|+|.+......|||||||++.+.. ..|.
T Consensus 22 ~~W~~~G~t~i~~~~IrLTp~~~~~~G~iws~~~~~~~---~w~i~~~Fri~g~~~~~~g~G~a~W~t~~~~----~~G~ 94 (229)
T PF03388_consen 22 PNWDIGGSTVITDNFIRLTPDRQSQSGSIWSRKPIPFD---NWEIEFTFRISGQEKGLGGDGMAFWYTKDPG----SDGP 94 (229)
T ss_dssp TTEEEEET-EEESSEEEEE-SSTTEEEEEEESS-BEES---EEEEEEEEEEESS-SSS-S-EEEEEEESSSS----SSCS
T ss_pred CCEEECCeEEecCCEEEECCCcccCEEEEEEcCCCCcc---CEEEEEEEEEeccccCcCCCeEEEEEEcCcc----cccc
Confidence 47999999999999999999999999999999999984 5999999999987555799999999997652 2566
Q ss_pred CCCCCCCCCCCCCCCcEEEEEEeccccCCCC-CCCCCeeEEecCCCccccccccccccccCcCCcc-ccccceecc-CCc
Q 010476 112 HLGFLNRTNDGNPNNNVFGIEFDVFQNQEFN-DINNNHVGLNVNSLTSLAAYEAGYWFQDNQNKTN-WHFHELKLN-NGK 188 (509)
Q Consensus 112 ~LGL~n~t~~gn~~n~~VAVEFDT~~N~~~~-DP~~nHVGIdVNSi~S~~t~~~~~~~~~~~g~~~-~s~~~~~L~-dG~ 188 (509)
.+|..+ ....+||-||||.|.+-. ......|.+.+|.-. .. |+...+|... -......+. .+.
T Consensus 95 ~fG~~~-------~f~Gl~i~idt~~N~~~~~~~~~p~i~~~~NDGt----~~---~~~~~dg~~~~~~~C~~~~rn~~~ 160 (229)
T PF03388_consen 95 VFGGPD-------KFDGLGIFIDTYDNDEGGHKRGFPYISAMLNDGT----KS---YDHDNDGKDQSLGSCSADYRNSDV 160 (229)
T ss_dssp BTTB-S-------S-EEEEEEEEES-TTCTTCTSTSSEEEEEEEESS----S------GGGTTTTT-SEEEE---BTESS
T ss_pred ccCCCc-------ccceEEEEEEcccCCCcccccccceEEEEecCCC----cc---ccccccCcccccccceeccCcCCC
Confidence 666532 467899999999986311 123456766666421 11 1111111100 000112222 256
Q ss_pred eEEEEEEEeCCeEEEEEEeCCCCCCCCceeEEEcccCcccCcceeEeeeecccceeecceeee
Q 010476 189 IYRVWIDYKDSFLSVSIAPAKMKKPLWPLLNVFIDLSDFFLDEMQGGSKSQRVDLERRGTRES 251 (509)
Q Consensus 189 ~~~VwIdY~s~~LsV~L~~~~~~kP~~plLs~~VDLs~vLpe~vyVGFSASTG~l~q~Hdres 251 (509)
..+++|.|..+.|.|.++..-.........+..++ .-.||+..||||||+||.+.++||.-+
T Consensus 161 p~~~ri~Y~~~~l~v~id~~~~~~~~~~~~Cf~~~-~v~LP~~~yfGvSA~Tg~~~d~hdi~s 222 (229)
T PF03388_consen 161 PTRIRISYSKNTLTVSIDSNYLKNQDDWELCFTTD-GVDLPEGYYFGVSAATGELSDNHDILS 222 (229)
T ss_dssp EEEEEEEEETTEEEEEEETSCCSECCTTEEEEEES-TEEGGSSBEEEEEEEESSSGGEEEEEE
T ss_pred CEEEEEEEECCeEEEEEecccccCCcCCcEEEEcC-CeecCCCCEEEEEecCCCCCCcEEEEE
Confidence 78999999988999999832111111222222222 123788899999999999999999765
No 8
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=5.1e-17 Score=167.93 Aligned_cols=219 Identities=19% Similarity=0.181 Sum_probs=152.1
Q ss_pred chhhHHHHHhHh--hcCCC-C----ceeEEeC-CCCCC----------CeEEecCeEeeCCeEEeCCCCCCcEEEEEeCc
Q 010476 3 FVKLLLLFLTIG--LVEPT-S----ALKFAFD-GFNTS----------KLLLYGSAKLDSGAISLTQDTTFSIGRALYHA 64 (509)
Q Consensus 3 ~~~lll~l~~~~--~~~sa-~----~~sFsf~-sF~~s----------~L~L~GdA~is~g~LrLT~~~~~s~Gra~Y~~ 64 (509)
.-|+++.||+|+ .+... . --.|.|. +|... -|..-|||..+...|||+|+..++.|.||-+.
T Consensus 7 ~gp~f~~lLllLa~~~~~~~~~~~~~rrFEYK~SFk~P~Laq~dgtiPFW~~~GdAIas~eqvRlaPSmrsrkGavWtka 86 (497)
T KOG3838|consen 7 PGPLFCALLLLLAPHVPETGCGTPPHRRFEYKYSFKGPRLAQPDGTIPFWSHHGDAIASSEQVRLAPSMRSRKGAVWTKA 86 (497)
T ss_pred CCchHHHHHHHccCcCcccccCCCccceeeeeecccCCccccCCCCcceeeecCcccccccceeeccccccccCceeecc
Confidence 346666666554 22221 1 1246654 67632 27788999889999999999999999999999
Q ss_pred ccccCCCCCeEEEEEEEEecCCCCCCCCceEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEEeccccCCCCCC
Q 010476 65 KIPLRRTNSFETSFTFSITPYKGQLPGHGLVFILVPSAGIQGAAASQHLGFLNRTNDGNPNNNVFGIEFDVFQNQEFNDI 144 (509)
Q Consensus 65 PV~L~d~aSFsTsFtF~I~~~~~~~ggDGLAFvL~p~~~~p~gs~Gg~LGL~n~t~~gn~~n~~VAVEFDT~~N~~~~DP 144 (509)
.+.+.+ |+.+.+|+|++.+ ..+|||||||++.... --|..+|- +...+.++|.||.|.|. +.-
T Consensus 87 ~~~fe~---weVev~~rVtGrG-RiGAdGlaiWYt~~~G----~~GpVfGg-------~d~WnGigiffDSfdnD--~qk 149 (497)
T KOG3838|consen 87 SVPFEN---WEVEVQFRVTGRG-RIGADGLAIWYTRGRG----HVGPVFGG-------LDSWNGIGIFFDSFDND--GQK 149 (497)
T ss_pred cCCccc---ceEEEEEEecccc-cccCCceEEEEecCCC----cccccccc-------cccccceEEEeeccccc--CCc
Confidence 999864 9999999999864 5899999999997542 23444443 23456799999999986 345
Q ss_pred CCCeeEEecCCCccccccccccccccCcCCc------cccccceeccCCceEEEEEEEeCCeEEEEEEeCCCCCCCCcee
Q 010476 145 NNNHVGLNVNSLTSLAAYEAGYWFQDNQNKT------NWHFHELKLNNGKIYRVWIDYKDSFLSVSIAPAKMKKPLWPLL 218 (509)
Q Consensus 145 ~~nHVGIdVNSi~S~~t~~~~~~~~~~~g~~------~~s~~~~~L~dG~~~~VwIdY~s~~LsV~L~~~~~~kP~~plL 218 (509)
+++-|.+..|.-+ .+ |+...+|+. .++|.+. --+.+++|+|-.++|+|-+...-++. .+.-+
T Consensus 150 nnP~Is~~lndGt----~~---ydh~~DGasQ~LssCqrDFRNk----PyPvRarItY~~nvLtv~innGmtp~-d~yE~ 217 (497)
T KOG3838|consen 150 NNPAISVLLNDGT----IP---YDHPGDGASQGLSSCQRDFRNK----PYPVRARITYYGNVLTVMINNGMTPS-DDYEF 217 (497)
T ss_pred CCccEEEEecCCc----cc---ccCCCccHHHHHHHhhHHhccC----CCCceEEEEEeccEEEEEEcCCCCCC-CCcce
Confidence 6778888776522 11 333323321 2334332 24688999999999999998543322 23345
Q ss_pred EEEcccCcccCcceeEeeeecccceeecceeee
Q 010476 219 NVFIDLSDFFLDEMQGGSKSQRVDLERRGTRES 251 (509)
Q Consensus 219 s~~VDLs~vLpe~vyVGFSASTG~l~q~Hdres 251 (509)
+..++ .-+||...|+|.|||||++.+.||+-+
T Consensus 218 C~rve-~~~lp~nGyFGvSAATGgLADDHDVl~ 249 (497)
T KOG3838|consen 218 CVRVE-NLLLPPNGYFGVSAATGGLADDHDVLS 249 (497)
T ss_pred eEecc-ceeccCCCeeeeeecccccccccceee
Confidence 44443 235789999999999999999999754
No 9
>cd06903 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmembrane proteins, N-terminal lectin domain. EMP46 and EMP47, N-terminal carbohydrate recognition domain. EMP46 and EMP47 are fungal type-I transmembrane proteins that cycle between the endoplasmic reticulum and the golgi apparatus and are thought to function as cargo receptors that transport newly synthesized glycoproteins. EMP47 is a receptor for EMP46 responsible for the selective transport of EMP46 by forming hetero-oligomerization between the two proteins. EMP46 and EMP47 have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. EMP46 and EMP47 are 45% sequence-identical to one another and have sequence homology to a class of intracellular lectins defined by ERGIC-53 and VIP36. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat s
Probab=99.72 E-value=5.2e-16 Score=151.80 Aligned_cols=181 Identities=16% Similarity=0.137 Sum_probs=124.5
Q ss_pred CCeEEecCeEeeCCeEEeCCCCCCcEEEEEeCcccccCCCCCeEEEEEEEEecCCCCCCCCceEEEEccCCCCCCCCCC-
Q 010476 32 SKLLLYGSAKLDSGAISLTQDTTFSIGRALYHAKIPLRRTNSFETSFTFSITPYKGQLPGHGLVFILVPSAGIQGAAAS- 110 (509)
Q Consensus 32 s~L~L~GdA~is~g~LrLT~~~~~s~Gra~Y~~PV~L~d~aSFsTsFtF~I~~~~~~~ggDGLAFvL~p~~~~p~gs~G- 110 (509)
.+|.+.|+|.+.++.|+||++ +++.|.+|-+.|+++.+ +|+++|+|+|++... .+|||||||++...... .|
T Consensus 21 ~~W~~~G~t~v~~~~IrLTp~-~s~~G~iWs~~pl~~~~--~w~ie~~Fri~G~~~-~~gdGla~W~t~~~~~~---~g~ 93 (215)
T cd06903 21 PNWQTSGNPKLESGRIILTPP-GNQRGSLWLKKPLSLKD--EWTIEWTFRSTGPEG-RSGGGLNFWLVKDGNAD---VGT 93 (215)
T ss_pred CCeEEcCcEEeeCCeEEECCC-CCceEeEeeCCcCCCCC--CEEEEEEEEecccCC-cCCCEEEEEEECCCccc---CCc
Confidence 579999999999999999999 99999999999999974 599999999987543 78999999999765211 12
Q ss_pred CCCCCCCCCCCCCCCCcEEEEEEeccccCCCCCCCCCeeEEecCC-CccccccccccccccCcCCcccccccee-ccCCc
Q 010476 111 QHLGFLNRTNDGNPNNNVFGIEFDVFQNQEFNDINNNHVGLNVNS-LTSLAAYEAGYWFQDNQNKTNWHFHELK-LNNGK 188 (509)
Q Consensus 111 g~LGL~n~t~~gn~~n~~VAVEFDT~~N~~~~DP~~nHVGIdVNS-i~S~~t~~~~~~~~~~~g~~~~s~~~~~-L~dG~ 188 (509)
..+|-. .....+||.|||+.|. ...|.+.+|. ....... .+ .+ -....+ .+. .+.+.
T Consensus 94 ~~fG~~-------~~f~Gl~I~~Dt~~n~------~p~i~~~~NDGt~~yd~~----~d-~~-~~~g~C--~~~~rn~~~ 152 (215)
T cd06903 94 SSIYGP-------SKFDGLQLLIDNNGGS------GGSLRGFLNDGSKDYKNE----DV-DS-LAFGSC--LFAYQDSGV 152 (215)
T ss_pred cccCCC-------CCCcEEEEEEECCCCC------CceEEEEECCCCeecccc----CC-cc-ccccee--eEeccCCCC
Confidence 334432 2456799999999873 1244444443 2111000 00 00 000011 122 24466
Q ss_pred eEEEEEEEeC--CeEEEEEEeCCCCCCCCceeEEEcccCcc-cC-cceeEeeeecccceeecceeee
Q 010476 189 IYRVWIDYKD--SFLSVSIAPAKMKKPLWPLLNVFIDLSDF-FL-DEMQGGSKSQRVDLERRGTRES 251 (509)
Q Consensus 189 ~~~VwIdY~s--~~LsV~L~~~~~~kP~~plLs~~VDLs~v-Lp-e~vyVGFSASTG~l~q~Hdres 251 (509)
+.+++|.|.. ..|+|.++.. .++ +...+ || ...|+||||+||++.+.|++-+
T Consensus 153 p~~iri~Y~~~~~~l~v~vd~~-------~Cf----~~~~v~lP~~~y~fGiSAaTg~~~d~hdIl~ 208 (215)
T cd06903 153 PSTIRLSYDALNSLFKVQVDNR-------LCF----QTDKVQLPQGGYRFGITAANADNPESFEILK 208 (215)
T ss_pred CEEEEEEEECCCCEEEEEECCC-------EEE----ecCCeecCCCCCEEEEEEcCCCCCCcEEEEE
Confidence 8999999965 8899988631 122 22332 67 5678999999999999998765
No 10
>KOG3839 consensus Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.5e-13 Score=140.30 Aligned_cols=192 Identities=18% Similarity=0.125 Sum_probs=138.5
Q ss_pred CCeEEecCeEeeCCeEEeCCCCCCcEEEEEeCcccccCCCCCeEEEEEEEEecCCCCCCCCceEEEEccCCCCCCCCCCC
Q 010476 32 SKLLLYGSAKLDSGAISLTQDTTFSIGRALYHAKIPLRRTNSFETSFTFSITPYKGQLPGHGLVFILVPSAGIQGAAASQ 111 (509)
Q Consensus 32 s~L~L~GdA~is~g~LrLT~~~~~s~Gra~Y~~PV~L~d~aSFsTsFtF~I~~~~~~~ggDGLAFvL~p~~~~p~gs~Gg 111 (509)
.+|.+.|++.+..+.||||++.+++.|++|-..||...+ |+..+.|+++...+...+||||++++-+... .|.
T Consensus 72 ~~W~~~Gstvv~~~~irLT~d~qsk~GAv~n~~Pv~s~~---wev~v~fkv~~~s~~lfgdG~Aiw~t~Er~q----~GP 144 (351)
T KOG3839|consen 72 PNWNLSGSTVVTSNYIRLTPDEQSKSGAVWNRQPVFSRD---WEVLVHFKVHGQSKNLFGDGMAIWYTKERAQ----PGP 144 (351)
T ss_pred cCccccccEEEEeeeeeccccccccccccccCCCccccc---eeEEEEEEEecCCCcccccceEEEeeccccc----CCC
Confidence 479999999999999999999999999999999999664 9999999999988888999999999987633 577
Q ss_pred CCCCCCCCCCCCCCCcEEEEEEeccccCCCCCCC---CCeeEEecCCCccccccccccccccCcCCccccc-cceeccCC
Q 010476 112 HLGFLNRTNDGNPNNNVFGIEFDVFQNQEFNDIN---NNHVGLNVNSLTSLAAYEAGYWFQDNQNKTNWHF-HELKLNNG 187 (509)
Q Consensus 112 ~LGL~n~t~~gn~~n~~VAVEFDT~~N~~~~DP~---~nHVGIdVNSi~S~~t~~~~~~~~~~~g~~~~s~-~~~~L~dG 187 (509)
.+|-++ ....+||-.|||-|.+ .|. .+-|.+.+|. .. .+|....+ |.+..-- ....+.+.
T Consensus 145 vFG~~d-------kF~GL~vfidtY~n~~--g~~~~v~P~isvmv~~----gs--~sYD~~~D-g~~tel~gc~a~~rn~ 208 (351)
T KOG3839|consen 145 VFGSKD-------KFTGLAVFIDTYGNHN--GPHEHVFPYISVMVNI----GS--LSYDHSKD-GTHTELAGCTANFRNL 208 (351)
T ss_pred CCCCcc-------cceeEEEEEeccCCcC--CCcccceeeEEEEecc----CC--cccccCCC-CCccccccceeeeccC
Confidence 888754 3567999999998853 121 2334444432 11 12222221 2210000 01112222
Q ss_pred -ceEEEEEEEeCCeEEEEEEeCCCCCCCCceeEEEcccCcc-cCcceeEeeeecccceeecceeee
Q 010476 188 -KIYRVWIDYKDSFLSVSIAPAKMKKPLWPLLNVFIDLSDF-FLDEMQGGSKSQRVDLERRGTRES 251 (509)
Q Consensus 188 -~~~~VwIdY~s~~LsV~L~~~~~~kP~~plLs~~VDLs~v-Lpe~vyVGFSASTG~l~q~Hdres 251 (509)
-...+.|.|+.++|++.++..+. . ...-+++|.++ ||..-|+|+||+||++.++|+.-+
T Consensus 209 ~~dt~~~iry~~~~l~~~~dl~~~---~--~~~~c~~~n~v~lp~g~~fg~SasTGdlSd~HdivS 269 (351)
T KOG3839|consen 209 PHDTLVVIRYEKKTLSISIDLEGP---N--EWIDCFSLNNVELPLGYFFGVSASTGDLSDSHDIVS 269 (351)
T ss_pred CCcceeEEEecCCceEEEEecCCC---c--eeeeeeeecceecccceEEeeeeccCccchhhHHHH
Confidence 23568899988999999886542 1 34456777776 889999999999999999999766
No 11
>cd06900 lectin_VcfQ VcfQ bacterial pilus biogenesis protein, lectin domain. This family includes bacterial proteins homologous to the VcfQ (also known as MshQ) bacterial pilus biogenesis protein. VcfQ is encoded by the vcfQ gene of the type IV pilus gene cluster of Vibrio cholerae and is essential for type IV pilus assembly. VcfQ has a Laminin G-like domain as well as an L-type lectin domain.
Probab=98.91 E-value=1.2e-07 Score=94.34 Aligned_cols=95 Identities=19% Similarity=0.235 Sum_probs=75.0
Q ss_pred eCCeEEeCCCCCCcEEEEEeCcccccCCCCCeEEEEEEEEecCCCCCCCCceEEEEccCC-CCCCCCCCCCCCCCCCC-C
Q 010476 43 DSGAISLTQDTTFSIGRALYHAKIPLRRTNSFETSFTFSITPYKGQLPGHGLVFILVPSA-GIQGAAASQHLGFLNRT-N 120 (509)
Q Consensus 43 s~g~LrLT~~~~~s~Gra~Y~~PV~L~d~aSFsTsFtF~I~~~~~~~ggDGLAFvL~p~~-~~p~gs~Gg~LGL~n~t-~ 120 (509)
.++.||||++..+|+|.+.|.+.++-.+ +....+|.+..... ...+||||||||.-.. ....+..||.|||.-.+ .
T Consensus 30 ~~g~LRLT~~~~nqata~~~~~~FPs~~-n~v~veFd~yayg~-~g~GADGia~vLsDasv~p~~G~fGGsLGYa~~~~~ 107 (255)
T cd06900 30 VNNRLRLTDASGNQATAVTLQRLFPSAG-NYVEVEFDYYAYGS-GGNGADGVALVLSDASVTPQAGAFGGSLGYAQRNDG 107 (255)
T ss_pred ccCeEEeccCccCcceeEEEeeeeccCC-CeEEEEEEEEEecC-CCCCCceEEEEEeCCCcCCcCCCcCcccccccccCC
Confidence 4799999999999999999999999754 25899999988764 4579999999999543 22357889999997654 2
Q ss_pred CCCCCCcEEEEEEeccccC
Q 010476 121 DGNPNNNVFGIEFDVFQNQ 139 (509)
Q Consensus 121 ~gn~~n~~VAVEFDT~~N~ 139 (509)
...-....++|-||-|-|-
T Consensus 108 ~~GfaGGwLGiGlDEyGNF 126 (255)
T cd06900 108 VPGFAGGWLGIGLDEYGNF 126 (255)
T ss_pred CCccccceEEEEEeccccc
Confidence 2234557899999998774
No 12
>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=97.21 E-value=0.00026 Score=77.13 Aligned_cols=62 Identities=50% Similarity=0.706 Sum_probs=53.9
Q ss_pred cccceeecceeeeccccCCCCchhhhhhhhhheecccCCccCCCCCCCCCCccCcCcCCCCCccc
Q 010476 239 QRVDLERRGTRESQAIPAPDANAELVLSMQKRKSQYNSKSRSEKFNPHPEEVASGFPIDPPRESQ 303 (509)
Q Consensus 239 STG~l~q~Hdres~a~pap~~Nael~~~~q~r~~q~N~ks~s~kf~p~~ed~~~gf~~~p~~~~~ 303 (509)
.-+...+..+++++++|++++|+|.++++|+| +.|.++.++||+|+++|+ +|||++|+++.|
T Consensus 441 ~~~~~~~~~~~~~r~~p~~~~~~~~~~~~~~~--~~n~~~~s~kf~p~~~~~-~~~~~~~~~~~~ 502 (560)
T KOG0600|consen 441 SKRRIRERGDRGSRAIPAQPANAESQASPQRR--KSNSRSNSEKFPPPEQDG-VGFPIGPSRRSQ 502 (560)
T ss_pred cccccccccccccCCCCCCCCCHHHhcccccc--ccCCcCcccCCCCccccc-cCcccCCccccC
Confidence 33344455578999999999999999999999 899999999999998888 999999998763
No 13
>smart00282 LamG Laminin G domain.
Probab=85.09 E-value=20 Score=31.38 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=23.4
Q ss_pred eeccCCceEEEEEEEeCCeEEEEEEeC
Q 010476 182 LKLNNGKIYRVWIDYKDSFLSVSIAPA 208 (509)
Q Consensus 182 ~~L~dG~~~~VwIdY~s~~LsV~L~~~ 208 (509)
..++||+||+|.|.++.+.+.++++..
T Consensus 57 ~~~~dg~WH~v~i~~~~~~~~l~VD~~ 83 (135)
T smart00282 57 TPLNDGQWHRVAVERNGRRVTLSVDGE 83 (135)
T ss_pred eEeCCCCEEEEEEEEeCCEEEEEECCC
Confidence 457899999999999989999999853
No 14
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=81.84 E-value=35 Score=29.93 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=22.8
Q ss_pred eccCCceEEEEEEEeCCeEEEEEEeC
Q 010476 183 KLNNGKIYRVWIDYKDSFLSVSIAPA 208 (509)
Q Consensus 183 ~L~dG~~~~VwIdY~s~~LsV~L~~~ 208 (509)
.++||+||+|.|.+..+.+.++++..
T Consensus 76 ~v~dg~Wh~v~i~~~~~~~~l~VD~~ 101 (151)
T cd00110 76 PLNDGQWHSVSVERNGRSVTLSVDGE 101 (151)
T ss_pred ccCCCCEEEEEEEECCCEEEEEECCc
Confidence 47899999999999888999999854
No 15
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=66.17 E-value=36 Score=41.44 Aligned_cols=145 Identities=18% Similarity=0.226 Sum_probs=84.3
Q ss_pred CCeEEecCeEee---CCeEEeCCCCCCcEEEEEeCcccccCCCC----------CeEEEEEEEEecCCCCCCCCceEEEE
Q 010476 32 SKLLLYGSAKLD---SGAISLTQDTTFSIGRALYHAKIPLRRTN----------SFETSFTFSITPYKGQLPGHGLVFIL 98 (509)
Q Consensus 32 s~L~L~GdA~is---~g~LrLT~~~~~s~Gra~Y~~PV~L~d~a----------SFsTsFtF~I~~~~~~~ggDGLAFvL 98 (509)
+.|+++|...+. .+.++|..-....-++++-..|+.++... .|+.+|-|+... ..+|||-.|
T Consensus 804 ~~LvFNG~~Yld~~K~~~~~ls~l~a~fkl~~iv~~paTf~sk~Sy~~la~L~ay~s~~l~Fqfkt----~sp~gll~f- 878 (1591)
T KOG3514|consen 804 SGLVFNGQDYLDKCKMGDIQLSELSARFKLRAIVADPATFKSKSSYVKLATLQAYFSMHLFFQFKT----TSPDGLLLF- 878 (1591)
T ss_pred hheEECcHHHHHHHhcCCcchhhcchhhCceEEeeccceeeechhhhhhhhhheeeEEEEEEEEee----cCCCeEEEe-
Confidence 579999999884 78888877666677888999999886543 377777777643 356665333
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEEeccccCCCCCCCCCeeEEecCC-CccccccccccccccCcCCccc
Q 010476 99 VPSAGIQGAAASQHLGFLNRTNDGNPNNNVFGIEFDVFQNQEFNDINNNHVGLNVNS-LTSLAAYEAGYWFQDNQNKTNW 177 (509)
Q Consensus 99 ~p~~~~p~gs~Gg~LGL~n~t~~gn~~n~~VAVEFDT~~N~~~~DP~~nHVGIdVNS-i~S~~t~~~~~~~~~~~g~~~~ 177 (509)
+.+ .-|.++|||.=.-+ -|--.|+.. -++.+-
T Consensus 879 -n~g---------------------d~ndfi~velvnG~---------ihYtfdlg~gp~~~k~---------------- 911 (1591)
T KOG3514|consen 879 -NSG---------------------DGNDFIAVELVNGY---------IHYTFDLGNGPTSMKG---------------- 911 (1591)
T ss_pred -cCC---------------------CCCceEEEEEeCcE---------EEEEEEcCCCcccccC----------------
Confidence 211 12578999964211 133333322 111111
Q ss_pred cccceeccCCceEEEEEEEeC-CeEEEEEEeCCCCCCCCceeEEEcccCcccCcceeEe
Q 010476 178 HFHELKLNNGKIYRVWIDYKD-SFLSVSIAPAKMKKPLWPLLNVFIDLSDFFLDEMQGG 235 (509)
Q Consensus 178 s~~~~~L~dG~~~~VwIdY~s-~~LsV~L~~~~~~kP~~plLs~~VDLs~vLpe~vyVG 235 (509)
.....|+|.+||+|.|.=+. +.=++.++... ....+...++| -|...+|||
T Consensus 912 -~sr~hlnDnrWHnV~I~rd~~~~HtL~vD~s~----~t~~~~g~~~l--~l~g~LyiG 963 (1591)
T KOG3514|consen 912 -PSRQHLNDNRWHNVLIYRDKTNTHTLKVDNSS----TTQIIDGAVNL--DLKGKLYIG 963 (1591)
T ss_pred -cccCcCccccceeEEEEcCCCCceEEEecCce----EEEEecCcccc--ccccceecc
Confidence 12456889999999887653 33333443221 12233333322 235678888
No 16
>PF01125 G10: G10 protein; InterPro: IPR001748 A Xenopus protein known as G10 [] has been found to be highly conserved in a wide range of eukaryotic species. The function of G10 is still unknown. G10 is a protein of about 17 to 18 kDa (143 to 157 residues) which is hydrophilic and whose C-terminal half is rich in cysteines and could be involved in metal-binding.; GO: 0005634 nucleus
Probab=56.86 E-value=16 Score=34.58 Aligned_cols=51 Identities=25% Similarity=0.432 Sum_probs=37.7
Q ss_pred cccCCC--cHHHHHHHHHHHHHHHHHhhccCccceeeccCcccCcccCceeeehhH-----HHHHHHHH
Q 010476 412 LIVLSG--NVYQMLKDQDLQVQEAVRRGHVDKAKFVISQGFCRGGVFERWPVLTIS-----YVYSLLKN 473 (509)
Q Consensus 412 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 473 (509)
--||.| .||+.|.|-+.++.+|.....-.|.+. ---||||-|. |||.|...
T Consensus 10 k~pP~G~~~Ie~tL~e~~~kmr~ae~~~~~~k~k~-----------e~lWpI~rI~hqrSRYIydlyYk 67 (145)
T PF01125_consen 10 KPPPEGFEKIEPTLEEFEQKMREAENEPHEGKRKN-----------ESLWPIFRIHHQRSRYIYDLYYK 67 (145)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhCCCcCCCCC-----------ccccceeeecchhhhHHHHHHHH
Confidence 457888 899999999999999987654333221 1279999764 88887643
No 17
>PF12248 Methyltransf_FA: Farnesoic acid 0-methyl transferase; InterPro: IPR022041 This domain, found in farnesoic acid O-methyl transferase, is approximately 110 amino acids in length. Farnesoic acid O-methyl transferase (FAMeT) is the enzyme that catalyses the formation of methyl farnesoate (MF) from farnesoic acid (FA) in the biosynthetic pathway of juvenile hormone (JH) [].
Probab=40.78 E-value=81 Score=27.40 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=33.5
Q ss_pred ccCCceEEEEEEEeCCeEEEEEEeCCCCCCCCceeEEEcccCcccCcceeEeeee
Q 010476 184 LNNGKIYRVWIDYKDSFLSVSIAPAKMKKPLWPLLNVFIDLSDFFLDEMQGGSKS 238 (509)
Q Consensus 184 L~dG~~~~VwIdY~s~~LsV~L~~~~~~kP~~plLs~~VDLs~vLpe~vyVGFSA 238 (509)
|+..+....||.+..+.++|..... ..|+|++. |-. -..--|||||+
T Consensus 49 ls~~e~~~fwI~~~~G~I~vg~~g~-----~~pfl~~~-Dp~--~~~v~yvGft~ 95 (102)
T PF12248_consen 49 LSPSEFRMFWISWRDGTIRVGRGGE-----DEPFLEWT-DPE--PIPVNYVGFTG 95 (102)
T ss_pred CCCCccEEEEEEECCCEEEEEECCC-----ccEEEEEE-CCC--CCcccEEEEec
Confidence 4566789999999899999998732 35788776 322 23456999954
No 18
>PHA03416 hypothetical E4 protein; Provisional
Probab=24.38 E-value=24 Score=31.05 Aligned_cols=21 Identities=38% Similarity=0.705 Sum_probs=15.5
Q ss_pred HHhhheeeeeccccccccCcccccC
Q 010476 475 FAIHHLYFSFHSATEECVGYPLLKL 499 (509)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (509)
|-|.|||....+ |--||||||
T Consensus 1 ~~~l~L~Lalp~----~~kYPLL~L 21 (92)
T PHA03416 1 YIIPTLCLALPS----APRYPLLRL 21 (92)
T ss_pred Cceeeeeecccc----cccCcchhh
Confidence 347789976555 456999997
No 19
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=23.90 E-value=96 Score=26.10 Aligned_cols=26 Identities=19% Similarity=0.338 Sum_probs=22.5
Q ss_pred eccCCceEEEEEEEeCCeEEEEEEeC
Q 010476 183 KLNNGKIYRVWIDYKDSFLSVSIAPA 208 (509)
Q Consensus 183 ~L~dG~~~~VwIdY~s~~LsV~L~~~ 208 (509)
.+.+|++|.+.|.+..+.+.+.++..
T Consensus 50 ~~~dg~wh~v~i~~~~~~~~l~Vd~~ 75 (128)
T PF02210_consen 50 NLNDGQWHKVSISRDGNRVTLTVDGQ 75 (128)
T ss_dssp SSTSSSEEEEEEEEETTEEEEEETTS
T ss_pred cccccceeEEEEEEeeeeEEEEecCc
Confidence 47899999999999999999988743
No 20
>PHA03417 E4 protein; Provisional
Probab=21.97 E-value=34 Score=31.37 Aligned_cols=23 Identities=35% Similarity=0.751 Sum_probs=17.2
Q ss_pred HHHHHHhhheeeeeccccccccCcccccC
Q 010476 471 LKNLFAIHHLYFSFHSATEECVGYPLLKL 499 (509)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (509)
...||-++|||.- .++ -||||||
T Consensus 12 ~a~l~~~l~L~L~--~~~----kYPLL~L 34 (118)
T PHA03417 12 AAQLYVLLHLYLA--LCK----KYPFLGL 34 (118)
T ss_pred hhhhhheeeeeec--ccC----CCchhhh
Confidence 3467888999954 333 6999998
No 21
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=20.63 E-value=1.4e+03 Score=28.96 Aligned_cols=49 Identities=29% Similarity=0.183 Sum_probs=29.8
Q ss_pred eeccCCceEEEEEEEeCCeEEEEEEeCCCCCCCCceeEEEcccCcccCcceeEe
Q 010476 182 LKLNNGKIYRVWIDYKDSFLSVSIAPAKMKKPLWPLLNVFIDLSDFFLDEMQGG 235 (509)
Q Consensus 182 ~~L~dG~~~~VwIdY~s~~LsV~L~~~~~~kP~~plLs~~VDLs~vLpe~vyVG 235 (509)
..++||.||+|.++=+...=+|.++.... .-..|=.+..+|| .+.+|+|
T Consensus 517 rkv~DGeWhhv~l~R~gR~gsvsVd~~~~-df~tpG~s~iL~l----d~~mylG 565 (1591)
T KOG3514|consen 517 RKVNDGEWHHVDLQRDGRTGSVSVDAIKT-DFSTPGDSEILDL----DDPMYLG 565 (1591)
T ss_pred ccccCCceEEEEeeccCccceEEEeeeec-CccCCCcceeEee----cCceeec
Confidence 45789999999988876555566654322 1112333444554 4577887
No 22
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.03 E-value=4.3e+02 Score=26.71 Aligned_cols=71 Identities=20% Similarity=0.332 Sum_probs=45.0
Q ss_pred hhhHHHHHhHhhcCCCCceeEEeCCCC--------CCCeEEecCeEee---CC-----eEEeCCCCCCcEEEEEeCcccc
Q 010476 4 VKLLLLFLTIGLVEPTSALKFAFDGFN--------TSKLLLYGSAKLD---SG-----AISLTQDTTFSIGRALYHAKIP 67 (509)
Q Consensus 4 ~~lll~l~~~~~~~sa~~~sFsf~sF~--------~s~L~L~GdA~is---~g-----~LrLT~~~~~s~Gra~Y~~PV~ 67 (509)
...+++++++++++...++.|+.+.=. .+|....|+-.+. ++ .+.+|+ +.|..+|..- +
T Consensus 5 ~~~~~l~i~~~~~~~~~a~~f~v~~~~~kCi~EeI~~n~lv~g~y~i~~~~~~~~~~~~~~Vts----~~G~~~~~~e-n 79 (210)
T KOG1691|consen 5 CLSLLLLIFLLLLPLVHALRFDVPSKTTKCISEEIHENVLVVGDYEIINPNGDHSHKLSVKVTS----PYGNNLHSKE-N 79 (210)
T ss_pred hHHHHHHHHHHHhhhhheEEEEecCCCCEeehhhhccCeEEEEEEEEecCCCCccceEEEEEEc----CCCceeehhh-c
Confidence 344555555556777788999987433 2577888887773 22 233444 5678887765 3
Q ss_pred cCCCCCeEEEEEEEEec
Q 010476 68 LRRTNSFETSFTFSITP 84 (509)
Q Consensus 68 L~d~aSFsTsFtF~I~~ 84 (509)
+. +..|+|.+..
T Consensus 80 v~-----~gqFaFta~e 91 (210)
T KOG1691|consen 80 VT-----KGQFAFTAEE 91 (210)
T ss_pred cc-----cceEEEEecc
Confidence 32 6788888754
Done!