BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010478
(509 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TXK|A Chain A, Crystal Structure Of Escherichia Coli Opgg
pdb|1TXK|B Chain B, Crystal Structure Of Escherichia Coli Opgg
Length = 498
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 15/72 (20%)
Query: 90 AEMRKRPRNTPATREV----KGEIVEDLMSLLPDDILINIISRLPLKEAAKTS------- 138
AE +K P +TP T + GEIVE + P ++ R+ +K+A KT+
Sbjct: 413 AEXKKLPEDTPVTAQTSIGDNGEIVESTVRYNPVTKGWRLVXRVKVKDAKKTTEXRAALV 472
Query: 139 ----VLSSRWKY 146
LS W Y
Sbjct: 473 NADQTLSETWSY 484
>pdb|3FFZ|A Chain A, Domain Organization In Clostridium Butulinum Neurotoxin
Type E Is Unique: Its Implication In Faster
Translocation
pdb|3FFZ|B Chain B, Domain Organization In Clostridium Butulinum Neurotoxin
Type E Is Unique: Its Implication In Faster
Translocation
Length = 1252
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 23/134 (17%)
Query: 98 NTPATREVKGEIVEDLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTFTTVLDFD 157
N+ T + I L S D ILI+ ++ K +SVL+ R+K +D
Sbjct: 812 NSMVTDTLNNSIPFKLSSYTDDKILISYFNKF-FKRIKSSSVLNMRYKN----DKYVDTS 866
Query: 158 GITESSNCISD----PTCIDKVLQLHRGSSINKFRLCLYSKDLHESEITNWVYSALSKRV 213
G + N D PT NK + +Y+ L E I+ Y +
Sbjct: 867 GYDSNININGDVYKYPT--------------NKNQFGIYNDKLSEVNISQNDYIIYDNKY 912
Query: 214 QIFELELWPRLKNY 227
+ F + W R+ NY
Sbjct: 913 KNFSISFWVRIPNY 926
>pdb|2AU1|A Chain A, Crystal Structure Of Group A Streptococcus Mac-1
Orthorhombic Form
Length = 292
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 312 STPNLLSFKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELD 371
+ N+L + + ++K ++E P+ I+F G + V+ + K +LD
Sbjct: 51 TAGNMLHWWFDQNKDQIKRYLEEHPEKQKINFNGEQMFDVKEAI--------DTKNHQLD 102
Query: 372 SCDELYAQFSEHELPNLTHLHLRV 395
S +L+ F E P L+ HL V
Sbjct: 103 S--KLFEYFKEKAFPYLSTKHLGV 124
>pdb|2AVW|A Chain A, Crystal Structure Of Monoclinic Form Of Streptococcus
Mac-1
pdb|2AVW|B Chain B, Crystal Structure Of Monoclinic Form Of Streptococcus
Mac-1
pdb|2AVW|C Chain C, Crystal Structure Of Monoclinic Form Of Streptococcus
Mac-1
pdb|2AVW|D Chain D, Crystal Structure Of Monoclinic Form Of Streptococcus
Mac-1
pdb|2AVW|E Chain E, Crystal Structure Of Monoclinic Form Of Streptococcus
Mac-1
pdb|2AVW|F Chain F, Crystal Structure Of Monoclinic Form Of Streptococcus
Mac-1
Length = 311
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 312 STPNLLSFKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELD 371
+ N+L + + ++K ++E P+ I+F G + V+ + K +LD
Sbjct: 70 TAGNMLHWWFDQNKDQIKRYLEEHPEKQKINFNGEQMFDVKEAI--------DTKNHQLD 121
Query: 372 SCDELYAQFSEHELPNLTHLHLRV 395
S +L+ F E P L+ HL V
Sbjct: 122 S--KLFEYFKEKAFPYLSTKHLGV 143
>pdb|1Y08|A Chain A, Structure Of The Streptococcal Endopeptidase Ides, A Novel
Cysteine Proteinase With Strict Specificity For Igg
Length = 323
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 312 STPNLLSFKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELD 371
+ N+L + + ++K ++E P+ I+F G + V+ + K +LD
Sbjct: 82 TAGNMLHWWFDQNKDQIKRYLEEHPEKQKINFNGEQMFDVKEAI--------DTKNHQLD 133
Query: 372 SCDELYAQFSEHELPNLTHLHLRV 395
S +L+ F E P L+ HL V
Sbjct: 134 S--KLFEYFKEKAFPYLSTKHLGV 155
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 58/152 (38%), Gaps = 14/152 (9%)
Query: 266 LHNCPLLDQLSVVRSETLVSL--KVVGSAIQLKHLRISTCYRLNEI-----KISTPNLLS 318
L N P L+ L + LV + QL +L I+ I +I T L
Sbjct: 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131
Query: 319 FKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYA 378
F Y L I + P LV I+F G R+ + F +L T S + L
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDG---NRISGAIPDSYGSFSKLFTSMTISRNRLTG 188
Query: 379 QFSEHELPNLTHLHLRVATLNRESLLGLASIM 410
+ P +L+L L+R L G AS++
Sbjct: 189 KIP----PTFANLNLAFVDLSRNMLEGDASVL 216
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,092,567
Number of Sequences: 62578
Number of extensions: 541988
Number of successful extensions: 982
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 982
Number of HSP's gapped (non-prelim): 10
length of query: 509
length of database: 14,973,337
effective HSP length: 103
effective length of query: 406
effective length of database: 8,527,803
effective search space: 3462288018
effective search space used: 3462288018
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)