Query 010478
Match_columns 509
No_of_seqs 315 out of 1889
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 01:00:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010478.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010478hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.7 2.5E-17 5.5E-22 154.6 2.0 264 114-423 98-396 (419)
2 KOG4341 F-box protein containi 99.5 2E-15 4.3E-20 148.0 -1.4 344 112-482 69-438 (483)
3 PF08387 FBD: FBD; InterPro: 99.1 9.2E-11 2E-15 83.4 4.1 47 432-478 4-50 (51)
4 smart00579 FBD domain in FBox 98.9 7.1E-10 1.5E-14 85.5 2.9 69 438-506 1-71 (72)
5 PF12937 F-box-like: F-box-lik 98.6 3.8E-08 8.1E-13 68.9 3.4 35 114-148 1-35 (47)
6 PF00646 F-box: F-box domain; 98.1 8.8E-07 1.9E-11 62.2 1.2 37 114-150 3-39 (48)
7 smart00256 FBOX A Receptor for 98.0 6.2E-06 1.3E-10 55.5 3.6 34 117-150 1-34 (41)
8 KOG2120 SCF ubiquitin ligase, 98.0 2.2E-07 4.7E-12 88.4 -5.6 182 245-454 185-375 (419)
9 KOG4341 F-box protein containi 97.9 2.1E-07 4.5E-12 92.3 -7.1 115 357-479 262-381 (483)
10 PLN03210 Resistant to P. syrin 97.8 3.2E-05 7E-10 90.7 6.9 83 241-325 630-715 (1153)
11 KOG1909 Ran GTPase-activating 97.8 1.2E-05 2.6E-10 78.4 2.7 255 184-453 32-309 (382)
12 cd00116 LRR_RI Leucine-rich re 97.7 2.7E-05 5.9E-10 77.8 4.3 231 242-478 48-315 (319)
13 PLN03210 Resistant to P. syrin 97.6 0.0001 2.3E-09 86.5 6.5 100 243-345 609-713 (1153)
14 PLN00113 leucine-rich repeat r 97.5 8.1E-05 1.8E-09 86.3 4.6 171 243-424 116-294 (968)
15 cd00116 LRR_RI Leucine-rich re 97.2 0.00045 9.7E-09 69.0 5.4 220 243-481 21-261 (319)
16 PLN00113 leucine-rich repeat r 97.1 0.00031 6.7E-09 81.5 3.8 59 360-423 305-365 (968)
17 KOG1947 Leucine rich repeat pr 97.1 0.00012 2.6E-09 77.5 -0.1 39 112-150 43-81 (482)
18 PF07723 LRR_2: Leucine Rich R 97.1 0.00069 1.5E-08 40.6 3.2 25 246-270 1-26 (26)
19 KOG1947 Leucine rich repeat pr 96.8 4.4E-05 9.5E-10 80.9 -6.4 64 242-305 240-307 (482)
20 KOG3207 Beta-tubulin folding c 96.7 7.7E-05 1.7E-09 74.8 -5.3 179 241-424 142-336 (505)
21 KOG3207 Beta-tubulin folding c 96.4 0.00035 7.6E-09 70.3 -2.3 178 243-423 119-310 (505)
22 KOG3665 ZYG-1-like serine/thre 96.4 0.0011 2.3E-08 73.1 0.8 204 244-478 59-283 (699)
23 KOG3665 ZYG-1-like serine/thre 96.2 0.002 4.4E-08 70.9 1.7 132 242-422 145-283 (699)
24 PF14580 LRR_9: Leucine-rich r 96.1 0.0023 5E-08 58.0 1.4 64 360-424 85-150 (175)
25 KOG4194 Membrane glycoprotein 95.9 0.0012 2.6E-08 68.8 -1.5 39 240-279 192-230 (873)
26 KOG2982 Uncharacterized conser 95.8 0.01 2.2E-07 57.3 4.1 218 243-467 69-307 (418)
27 KOG4194 Membrane glycoprotein 95.3 0.0028 6E-08 66.2 -1.7 13 412-424 315-327 (873)
28 KOG1909 Ran GTPase-activating 94.5 0.016 3.5E-07 57.1 1.3 36 244-279 29-67 (382)
29 PRK15387 E3 ubiquitin-protein 94.4 0.11 2.3E-06 58.1 7.5 130 244-394 241-370 (788)
30 PRK15370 E3 ubiquitin-protein 94.2 0.058 1.2E-06 60.2 5.0 205 244-481 219-426 (754)
31 PRK15387 E3 ubiquitin-protein 93.7 0.069 1.5E-06 59.5 4.5 74 361-452 380-455 (788)
32 PF14580 LRR_9: Leucine-rich r 93.6 0.011 2.3E-07 53.7 -1.8 35 245-281 19-53 (175)
33 KOG0281 Beta-TrCP (transducin 93.3 0.052 1.1E-06 53.1 2.2 38 109-146 70-111 (499)
34 PLN03215 ascorbic acid mannose 92.7 0.09 1.9E-06 53.3 3.1 36 114-149 4-40 (373)
35 COG5238 RNA1 Ran GTPase-activa 92.6 0.057 1.2E-06 51.6 1.4 172 240-424 87-282 (388)
36 KOG2997 F-box protein FBX9 [Ge 91.1 0.15 3.2E-06 49.6 2.5 35 112-146 105-144 (366)
37 PRK15370 E3 ubiquitin-protein 91.1 0.14 2.9E-06 57.3 2.5 190 245-465 241-438 (754)
38 KOG2123 Uncharacterized conser 89.8 0.021 4.6E-07 54.6 -4.4 40 382-421 84-124 (388)
39 PRK15386 type III secretion pr 89.4 0.64 1.4E-05 47.9 5.5 135 266-423 48-186 (426)
40 PF12799 LRR_4: Leucine Rich r 89.1 0.18 3.8E-06 34.4 0.9 35 245-281 1-35 (44)
41 KOG2982 Uncharacterized conser 88.6 0.22 4.9E-06 48.3 1.5 86 334-424 69-156 (418)
42 PRK15386 type III secretion pr 88.2 0.54 1.2E-05 48.4 4.0 68 246-322 73-140 (426)
43 KOG3864 Uncharacterized conser 87.3 0.066 1.4E-06 49.0 -2.8 43 242-284 122-165 (221)
44 PF13855 LRR_8: Leucine rich r 86.9 0.53 1.2E-05 34.3 2.4 34 359-393 21-56 (61)
45 PF13855 LRR_8: Leucine rich r 86.7 0.16 3.5E-06 37.1 -0.5 35 245-280 1-35 (61)
46 smart00367 LRR_CC Leucine-rich 85.7 0.26 5.7E-06 29.2 0.2 17 269-285 1-17 (26)
47 KOG3864 Uncharacterized conser 85.6 0.083 1.8E-06 48.4 -3.0 60 247-307 103-165 (221)
48 KOG0444 Cytoskeletal regulator 84.9 0.063 1.4E-06 56.9 -4.6 21 431-451 232-254 (1255)
49 PF13013 F-box-like_2: F-box-l 82.4 1.4 3E-05 36.5 3.1 29 114-142 22-50 (109)
50 KOG0618 Serine/threonine phosp 81.4 0.86 1.9E-05 50.8 2.0 60 360-424 449-510 (1081)
51 KOG0444 Cytoskeletal regulator 80.0 0.043 9.3E-07 58.1 -8.0 37 382-423 335-371 (1255)
52 KOG2739 Leucine-rich acidic nu 79.9 0.22 4.9E-06 47.3 -2.7 58 267-325 40-102 (260)
53 KOG1644 U2-associated snRNP A' 79.3 3.7 8E-05 37.9 5.0 82 241-325 60-151 (233)
54 KOG0274 Cdc4 and related F-box 72.0 1.8 3.9E-05 46.5 1.3 40 108-147 102-141 (537)
55 KOG4658 Apoptotic ATPase [Sign 71.4 0.92 2E-05 51.8 -1.2 12 382-393 713-724 (889)
56 PF08387 FBD: FBD; InterPro: 71.3 4.7 0.0001 28.3 2.8 38 385-422 13-50 (51)
57 KOG1859 Leucine-rich repeat pr 68.7 2.1 4.5E-05 46.8 0.8 17 242-258 106-122 (1096)
58 PF13516 LRR_6: Leucine Rich r 68.2 2.8 6.1E-05 24.1 1.0 22 244-265 1-22 (24)
59 KOG1644 U2-associated snRNP A' 66.5 6 0.00013 36.6 3.2 98 359-464 60-162 (233)
60 KOG4658 Apoptotic ATPase [Sign 66.1 6.7 0.00014 45.0 4.2 61 357-423 565-627 (889)
61 KOG1259 Nischarin, modulator o 63.2 6.8 0.00015 38.4 3.0 57 360-423 304-361 (490)
62 KOG1259 Nischarin, modulator o 62.8 9.6 0.00021 37.4 4.0 98 315-424 285-384 (490)
63 COG5238 RNA1 Ran GTPase-activa 62.1 29 0.00064 33.7 7.0 122 357-480 86-224 (388)
64 KOG0617 Ras suppressor protein 59.3 0.3 6.5E-06 43.6 -6.2 38 382-424 146-183 (264)
65 KOG4237 Extracellular matrix p 58.1 8.2 0.00018 39.3 2.7 96 313-412 273-373 (498)
66 COG4886 Leucine-rich repeat (L 55.6 3.4 7.3E-05 42.6 -0.4 142 246-395 141-286 (394)
67 smart00579 FBD domain in FBox 52.6 18 0.00039 27.1 3.3 39 386-424 5-43 (72)
68 PF09372 PRANC: PRANC domain; 50.3 12 0.00025 30.2 2.0 25 112-136 70-94 (97)
69 KOG0618 Serine/threonine phosp 48.8 4.4 9.5E-05 45.5 -0.9 33 292-325 451-487 (1081)
70 KOG0472 Leucine-rich repeat pr 48.2 3.2 6.9E-05 42.3 -1.9 38 382-424 501-538 (565)
71 KOG2739 Leucine-rich acidic nu 47.5 7.1 0.00015 37.4 0.4 41 382-424 61-101 (260)
72 PF13504 LRR_7: Leucine rich r 46.4 10 0.00023 19.9 0.8 11 271-281 2-12 (17)
73 KOG0617 Ras suppressor protein 46.1 0.86 1.9E-05 40.8 -5.5 85 329-423 72-159 (264)
74 KOG2123 Uncharacterized conser 40.1 3.4 7.3E-05 40.1 -3.0 62 359-424 37-98 (388)
75 PLN03150 hypothetical protein; 40.0 13 0.00027 41.2 0.9 79 246-325 419-501 (623)
76 PF13306 LRR_5: Leucine rich r 36.7 12 0.00025 31.3 0.0 12 360-371 78-89 (129)
77 PLN03150 hypothetical protein; 32.7 32 0.00069 38.0 2.6 62 331-396 437-500 (623)
78 PF00560 LRR_1: Leucine Rich R 31.9 29 0.00063 19.4 1.2 9 272-280 2-10 (22)
79 COG4829 CatC1 Muconolactone de 22.9 24 0.00053 27.5 -0.3 35 117-151 11-47 (98)
80 KOG4408 Putative Mg2+ and Co2+ 21.4 21 0.00045 35.5 -1.2 34 114-147 8-41 (386)
81 smart00368 LRR_RI Leucine rich 20.5 62 0.0013 19.3 1.2 21 245-265 2-22 (28)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.5e-17 Score=154.60 Aligned_cols=264 Identities=22% Similarity=0.251 Sum_probs=156.2
Q ss_pred CCCCcHHHHHHHHcCCChhhHHHHHhhhhhhhh------hcccCceeEEeCCCCCCCCCChHHHHHHHhccccCCccceE
Q 010478 114 MSLLPDDILINIISRLPLKEAAKTSVLSSRWKY------LWTFTTVLDFDGITESSNCISDPTCIDKVLQLHRGSSINKF 187 (509)
Q Consensus 114 is~LPdeiL~~ILs~Lp~~d~~rts~lSrRWr~------lw~~~p~L~f~~~~~~~~~~~~~~~v~~~L~~~~~~~l~~l 187 (509)
|..|||||+..||+.|+.+|..+.+.|||||.+ +|.. +++.+..+ ... ...+++. .| |..|
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~---lDl~~r~i--~p~----~l~~l~~--rg--V~v~ 164 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT---LDLTGRNI--HPD----VLGRLLS--RG--VIVF 164 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee---eccCCCcc--Chh----HHHHHHh--CC--eEEE
Confidence 789999999999999999999999999999987 5765 55554443 111 1122211 12 4445
Q ss_pred EEEeecCCCChhhHHHHHHH--HhccCcEEEEEEecCCCc----ceeeeccc-----cccccc------CCccCcCCcEE
Q 010478 188 RLCLYSKDLHESEITNWVYS--ALSKRVQIFELELWPRLK----NYTFLENC-----YNNLKS------ELSGVKYLRSL 250 (509)
Q Consensus 188 ~l~~~~~~~~~~~~~~wl~~--a~~~~v~~L~L~~~~~~~----~~~~p~~~-----~~~L~~------~~~~~p~Lk~L 250 (509)
++.-.. ... . +...+ ..+.++|+++|+...-.. ...-+|.. ...++. ..+...+|+.|
T Consensus 165 Rlar~~-~~~-p---rlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~l 239 (419)
T KOG2120|consen 165 RLARSF-MDQ-P---RLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRL 239 (419)
T ss_pred Ecchhh-hcC-c---hhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceee
Confidence 442110 001 1 11121 223467788776543100 00011110 111111 23456778888
Q ss_pred EEeeEE-EChhhHHHHHhCCccccceeeeccccee---eEEEecccccceEEEEecccC------ccEEEEECCceeEEE
Q 010478 251 RLFSVN-VTGEILEFILHNCPLLDQLSVVRSETLV---SLKVVGSAIQLKHLRISTCYR------LNEIKISTPNLLSFK 320 (509)
Q Consensus 251 ~L~~v~-~~~~~l~~lls~CP~Le~L~L~~c~~~~---~l~i~~~~~~Lk~L~l~~c~~------l~~l~i~aP~L~~L~ 320 (509)
+|+.+. |++..+.-++++|..|.+|+|++|...+ .+.|.+-+++|+.|.+.+|.. +..+.-.+|+|..|+
T Consensus 240 nlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LD 319 (419)
T KOG2120|consen 240 NLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLD 319 (419)
T ss_pred ccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeec
Confidence 887775 7777777788888888888888886543 222333346777777777752 122223456666666
Q ss_pred EecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhh--hhccCCCCCCcccEEEEEeecc
Q 010478 321 YFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDEL--YAQFSEHELPNLTHLHLRVATL 398 (509)
Q Consensus 321 ~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~--~~~~~~~~f~~Lk~L~L~~~~~ 398 (509)
++++. .+.+.+...+..++.|++|.++.|+.+ ...+.+...|.|++|++.++.
T Consensus 320 LSD~v------------------------~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v- 374 (419)
T KOG2120|consen 320 LSDSV------------------------MLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV- 374 (419)
T ss_pred ccccc------------------------ccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc-
Confidence 65554 111122234457888999999999877 223337788899999995543
Q ss_pred CccCHHHHHHHhhcCCCCcEEEEEE
Q 010478 399 NRESLLGLASIMKACPFLQTLIVQF 423 (509)
Q Consensus 399 ~~~~~~~l~~lL~~~P~Le~L~i~~ 423 (509)
.+..+.-+.+.||+|+.-.-.+
T Consensus 375 ---sdt~mel~~e~~~~lkin~q~~ 396 (419)
T KOG2120|consen 375 ---SDTTMELLKEMLSHLKINCQHF 396 (419)
T ss_pred ---CchHHHHHHHhCccccccceee
Confidence 3335777888999887655444
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.49 E-value=2e-15 Score=148.02 Aligned_cols=344 Identities=18% Similarity=0.201 Sum_probs=209.7
Q ss_pred ccCC-CCcHHHHHHHHcCCChhhHHHHHhhhhhhhhh------cccCceeEEeCCCCCCCCCChHHHHHHHhccccCCcc
Q 010478 112 DLMS-LLPDDILINIISRLPLKEAAKTSVLSSRWKYL------WTFTTVLDFDGITESSNCISDPTCIDKVLQLHRGSSI 184 (509)
Q Consensus 112 D~is-~LPdeiL~~ILs~Lp~~d~~rts~lSrRWr~l------w~~~p~L~f~~~~~~~~~~~~~~~v~~~L~~~~~~~l 184 (509)
+-++ .||.|++..|||+|+++...|++.+|+-|.-+ |....-.+|..+ .+ ...|. .+..+.|.++
T Consensus 69 ~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rD-----v~--g~VV~-~~~~Rcgg~l 140 (483)
T KOG4341|consen 69 NSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRD-----VD--GGVVE-NMISRCGGFL 140 (483)
T ss_pred ccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhc-----CC--Cccee-hHhhhhcccc
Confidence 3344 59999999999999999999999999999764 665433333211 11 12222 2334455669
Q ss_pred ceEEEEeecCCCChhhHHHHHHHH-hccCcEEEEEEecCCCcceeeecccccccccCCccCcCCcEEEEee-EEEChhhH
Q 010478 185 NKFRLCLYSKDLHESEITNWVYSA-LSKRVQIFELELWPRLKNYTFLENCYNNLKSELSGVKYLRSLRLFS-VNVTGEIL 262 (509)
Q Consensus 185 ~~l~l~~~~~~~~~~~~~~wl~~a-~~~~v~~L~L~~~~~~~~~~~p~~~~~~L~~~~~~~p~Lk~L~L~~-v~~~~~~l 262 (509)
+.++++...+..+.. .-.++ ..+++++|.+..+ +.+...++.+ ....|+.|+.|.|.. ..+++..+
T Consensus 141 k~LSlrG~r~v~~ss----lrt~~~~CpnIehL~l~gc-----~~iTd~s~~s---la~~C~~l~~l~L~~c~~iT~~~L 208 (483)
T KOG4341|consen 141 KELSLRGCRAVGDSS----LRTFASNCPNIEHLALYGC-----KKITDSSLLS---LARYCRKLRHLNLHSCSSITDVSL 208 (483)
T ss_pred ccccccccccCCcch----hhHHhhhCCchhhhhhhcc-----eeccHHHHHH---HHHhcchhhhhhhcccchhHHHHH
Confidence 999997764322211 11222 2358888876543 2222222211 235688999999988 45888889
Q ss_pred HHHHhCCccccceeeecccceeeEE---EecccccceEEEEecccCcc-----EEEEECCceeEEEEecCCccce----e
Q 010478 263 EFILHNCPLLDQLSVVRSETLVSLK---VVGSAIQLKHLRISTCYRLN-----EIKISTPNLLSFKYFGPGQELK----L 330 (509)
Q Consensus 263 ~~lls~CP~Le~L~L~~c~~~~~l~---i~~~~~~Lk~L~l~~c~~l~-----~l~i~aP~L~~L~~~g~~~~~~----~ 330 (509)
+.+..+||+|++|++++|+.+..-. +..++..|+.+...+|...+ .++-.++.+..+++..+..-.+ .
T Consensus 209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~ 288 (483)
T KOG4341|consen 209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL 288 (483)
T ss_pred HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH
Confidence 8899999999999999998765311 22344557777666776421 1222233333333222220000 0
Q ss_pred eecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhh-hhccC--CCCCCcccEEEEEeeccCccCHHHHH
Q 010478 331 HIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDEL-YAQFS--EHELPNLTHLHLRVATLNRESLLGLA 407 (509)
Q Consensus 331 ~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~-~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~ 407 (509)
.--.+..|+.+....... ..+..+..+..++++|+.|.+..|..+ ...+. ..+++.|+.|+++.+... .+..++
T Consensus 289 i~~~c~~lq~l~~s~~t~-~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~--~d~tL~ 365 (483)
T KOG4341|consen 289 IACGCHALQVLCYSSCTD-ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLI--TDGTLA 365 (483)
T ss_pred HhhhhhHhhhhcccCCCC-CchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccccee--hhhhHh
Confidence 011133344443333111 334556677889999999999988876 22222 678899999999665543 333689
Q ss_pred HHhhcCCCCcEEEEEEeecCCccCCcccc--CccccCCccEEEEecccCCccHHHHHHHHHhcCccCCcEEEEecCC
Q 010478 408 SIMKACPFLQTLIVQFDYNGYKVGRRRKV--PRHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVNRTNY 482 (509)
Q Consensus 408 ~lL~~~P~Le~L~i~~~~~~~~~~~~~~~--p~c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m~I~~~~~ 482 (509)
++-.+||.|++|.++..+.... ...+.+ -.|.+.+|..+++.+...... +..+ .+.+.+.||++.+..-..
T Consensus 366 sls~~C~~lr~lslshce~itD-~gi~~l~~~~c~~~~l~~lEL~n~p~i~d--~~Le-~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 366 SLSRNCPRLRVLSLSHCELITD-EGIRHLSSSSCSLEGLEVLELDNCPLITD--ATLE-HLSICRNLERIELIDCQD 438 (483)
T ss_pred hhccCCchhccCChhhhhhhhh-hhhhhhhhccccccccceeeecCCCCchH--HHHH-HHhhCcccceeeeechhh
Confidence 9999999999999984322111 111111 247788899999988877653 2333 456778999977665433
No 3
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=99.09 E-value=9.2e-11 Score=83.42 Aligned_cols=47 Identities=47% Similarity=0.693 Sum_probs=44.4
Q ss_pred CccccCccccCCccEEEEecccCCccHHHHHHHHHhcCccCCcEEEE
Q 010478 432 RRRKVPRHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVN 478 (509)
Q Consensus 432 ~~~~~p~c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m~I~ 478 (509)
+...+|+|..+|||.|+|.||.|.++|++|++||++||++||+|+|.
T Consensus 4 ~~~~~p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 4 EPSSVPECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred CCCCCccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 45678999999999999999999999999999999999999999996
No 4
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=98.91 E-value=7.1e-10 Score=85.47 Aligned_cols=69 Identities=25% Similarity=0.286 Sum_probs=59.0
Q ss_pred ccccCCccEEEEecccCCccHHHHHHHHHhcCccCCcEEEEecCCccCc--cCCCccccchhhhhhcccEE
Q 010478 438 RHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVNRTNYSFGC--GNAKDCTKLREAKLRQGVEL 506 (509)
Q Consensus 438 ~c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m~I~~~~~~~~~--~~~~~~~~l~~~~~~~~v~~ 506 (509)
+|..+|||.|+|.||.|..+|+++++||++||+.||+|+|...+..... ...+++..++++|.+++|.+
T Consensus 1 ~cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~~~~~~i~~~L~~~~~aS~~c~i~~ 71 (72)
T smart00579 1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDDEKLEILKELLSLPRASSSCQVQF 71 (72)
T ss_pred CcchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCCccHHHHHHHHHHhCcCCCCceEEEe
Confidence 4788999999999999999999999999999999999999987754332 23567888899999988754
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.60 E-value=3.8e-08 Score=68.92 Aligned_cols=35 Identities=34% Similarity=0.655 Sum_probs=30.9
Q ss_pred CCCCcHHHHHHHHcCCChhhHHHHHhhhhhhhhhc
Q 010478 114 MSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLW 148 (509)
Q Consensus 114 is~LPdeiL~~ILs~Lp~~d~~rts~lSrRWr~lw 148 (509)
|+.||+||+.+||++|+.+|.++++.|||+|+++-
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999853
No 6
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.13 E-value=8.8e-07 Score=62.19 Aligned_cols=37 Identities=41% Similarity=0.600 Sum_probs=31.5
Q ss_pred CCCCcHHHHHHHHcCCChhhHHHHHhhhhhhhhhccc
Q 010478 114 MSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTF 150 (509)
Q Consensus 114 is~LPdeiL~~ILs~Lp~~d~~rts~lSrRWr~lw~~ 150 (509)
|++||+|++.+||++|+.+|.++.+.|||+|+++...
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 6789999999999999999999999999999987654
No 7
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.01 E-value=6.2e-06 Score=55.55 Aligned_cols=34 Identities=41% Similarity=0.707 Sum_probs=31.6
Q ss_pred CcHHHHHHHHcCCChhhHHHHHhhhhhhhhhccc
Q 010478 117 LPDDILINIISRLPLKEAAKTSVLSSRWKYLWTF 150 (509)
Q Consensus 117 LPdeiL~~ILs~Lp~~d~~rts~lSrRWr~lw~~ 150 (509)
||+|++.+||++|+.+|..+++.|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999987543
No 8
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=2.2e-07 Score=88.40 Aligned_cols=182 Identities=21% Similarity=0.236 Sum_probs=89.8
Q ss_pred cCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeE--EEecccccceEEEEecccCccEEEEECCceeEEEEe
Q 010478 245 KYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSL--KVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYF 322 (509)
Q Consensus 245 p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l--~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~~~ 322 (509)
.+|+.|+|++..++...+..+++.|..|+.|+|++-.-.+.+ .|+.. ..|+.|++..|..+....
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~------------ 251 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKN-SNLVRLNLSMCSGFTENA------------ 251 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcc-ccceeeccccccccchhH------------
Confidence 357777777777777777777777777777777765433221 23322 456666666665322111
Q ss_pred cCCccceeeecCCCCceEEEEEeccchhhhhhhcccccC-CCCccEEEEeechhh--hhccC--CCCCCcccEEEEEeec
Q 010478 323 GPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSC-FPQLKTLELDSCDEL--YAQFS--EHELPNLTHLHLRVAT 397 (509)
Q Consensus 323 g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~-l~~L~~L~L~~~~~~--~~~~~--~~~f~~Lk~L~L~~~~ 397 (509)
....+.++.+|.++.+..++.. ...++.+... -++++.|.|+++... ...+. ...+++|.+|+|+.+.
T Consensus 252 -----~~ll~~scs~L~~LNlsWc~l~--~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 252 -----LQLLLSSCSRLDELNLSWCFLF--TEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred -----HHHHHHhhhhHhhcCchHhhcc--chhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence 2223445555555555442210 1111111111 134555566544322 11111 4556666666664432
Q ss_pred cCccCHHHHHHHhhcCCCCcEEEEEEeecCCc--cCCccccCccccCCccEEEEecccC
Q 010478 398 LNRESLLGLASIMKACPFLQTLIVQFDYNGYK--VGRRRKVPRHSHQHLKLVELHGFLG 454 (509)
Q Consensus 398 ~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~--~~~~~~~p~c~~~~Lk~V~i~~f~g 454 (509)
. ... ++...+-.+|.|+.|.+.-+|...+ .-+.. ....|+++.+.|+..
T Consensus 325 ~--l~~-~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~-----s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 325 M--LKN-DCFQEFFKFNYLQHLSLSRCYDIIPETLLELN-----SKPSLVYLDVFGCVS 375 (419)
T ss_pred c--cCc-hHHHHHHhcchheeeehhhhcCCChHHeeeec-----cCcceEEEEeccccC
Confidence 2 111 3555555666666666665543222 11111 234566666666544
No 9
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.91 E-value=2.1e-07 Score=92.32 Aligned_cols=115 Identities=16% Similarity=0.124 Sum_probs=70.0
Q ss_pred ccccCCCCccEEEEeechhh-hhc-cC-CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCc
Q 010478 357 PITSCFPQLKTLELDSCDEL-YAQ-FS-EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRR 433 (509)
Q Consensus 357 ~l~~~l~~L~~L~L~~~~~~-~~~-~~-~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~ 433 (509)
.....++-+..+++..|..+ ... .. ...+..|+.|... .+...++..+..+-+.|++|+.|.++.... ..+.
T Consensus 262 ~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s--~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~---fsd~ 336 (483)
T KOG4341|consen 262 KAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYS--SCTDITDEVLWALGQHCHNLQVLELSGCQQ---FSDR 336 (483)
T ss_pred HHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhccc--CCCCCchHHHHHHhcCCCceEEEeccccch---hhhh
Confidence 33355556666666666554 111 11 4456677888773 344567777889999999999999988521 0010
Q ss_pred c-ccCccccCCccEEEEecc-cCCccHHHHHHHHHhcCccCCcEEEEe
Q 010478 434 R-KVPRHSHQHLKLVELHGF-LGRPIDLELAFYILENAMTLEKMVVNR 479 (509)
Q Consensus 434 ~-~~p~c~~~~Lk~V~i~~f-~g~~~e~~l~~~lL~na~~Le~m~I~~ 479 (509)
. .+-.-...+|+.+.+.+. .+... -+..+..|++.|+++.++.
T Consensus 337 ~ft~l~rn~~~Le~l~~e~~~~~~d~---tL~sls~~C~~lr~lslsh 381 (483)
T KOG4341|consen 337 GFTMLGRNCPHLERLDLEECGLITDG---TLASLSRNCPRLRVLSLSH 381 (483)
T ss_pred hhhhhhcCChhhhhhcccccceehhh---hHhhhccCCchhccCChhh
Confidence 0 000112456777777663 33332 2456788999999999983
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.79 E-value=3.2e-05 Score=90.73 Aligned_cols=83 Identities=19% Similarity=0.217 Sum_probs=46.9
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEe-cccccceEEEEecccCccEEEE--ECCcee
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVV-GSAIQLKHLRISTCYRLNEIKI--STPNLL 317 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~-~~~~~Lk~L~l~~c~~l~~l~i--~aP~L~ 317 (509)
...+++|+.|+|++...-. .+.. ++.+++||.|+|.+|..+..+.-. ..+++|+.|.+.+|..++.+.. ..++|+
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~-~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~ 707 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLK-EIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLY 707 (1153)
T ss_pred cccCCCCCEEECCCCCCcC-cCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCC
Confidence 4567888888887653111 0111 456788888888887655432111 1235677777777765544332 345566
Q ss_pred EEEEecCC
Q 010478 318 SFKYFGPG 325 (509)
Q Consensus 318 ~L~~~g~~ 325 (509)
.|.+.|+.
T Consensus 708 ~L~Lsgc~ 715 (1153)
T PLN03210 708 RLNLSGCS 715 (1153)
T ss_pred EEeCCCCC
Confidence 66665553
No 11
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.79 E-value=1.2e-05 Score=78.43 Aligned_cols=255 Identities=18% Similarity=0.169 Sum_probs=140.4
Q ss_pred cceEEEEeecCCCChhhHHHHHHHHhcc--CcEEEEEEecCC-CcceeeecccccccccCCccCcCCcEEEEeeEEECh-
Q 010478 184 INKFRLCLYSKDLHESEITNWVYSALSK--RVQIFELELWPR-LKNYTFLENCYNNLKSELSGVKYLRSLRLFSVNVTG- 259 (509)
Q Consensus 184 l~~l~l~~~~~~~~~~~~~~wl~~a~~~--~v~~L~L~~~~~-~~~~~~p~~~~~~L~~~~~~~p~Lk~L~L~~v~~~~- 259 (509)
+..+.++ ++..+.-..+|+..+.+. .+++.+++-... ...-..|. ....|-....++|.|++|+|+.-.|..
T Consensus 32 ~~~l~ls---gnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e-~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 32 LTKLDLS---GNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPE-ALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred eEEEecc---CCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHH-HHHHHHHHHhcCCceeEeeccccccCcc
Confidence 6666664 334455677888777664 344443321100 00001110 011111134578899999999887765
Q ss_pred --hhHHHHHhCCccccceeeeccccee--eEEEecccccceEEEEecccCccEEEEECCceeEEEEecCCc------cce
Q 010478 260 --EILEFILHNCPLLDQLSVVRSETLV--SLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYFGPGQ------ELK 329 (509)
Q Consensus 260 --~~l~~lls~CP~Le~L~L~~c~~~~--~l~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~~~g~~~------~~~ 329 (509)
+.+..++++|..||+|.|.+|-.-. .-.+. ..|..|. .....-+.|.|++|.+..... ...
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~---~al~~l~------~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A 178 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG---RALFELA------VNKKAASKPKLRVFICGRNRLENGGATALA 178 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH---HHHHHHH------HHhccCCCcceEEEEeeccccccccHHHHH
Confidence 4589999999999999999994211 10111 1121111 111222467777777654431 112
Q ss_pred eeecCCCCceEEEEEecc-chhhhhhhcccccCCCCccEEEEeech---hhhhccC--CCCCCcccEEEEEeeccCccCH
Q 010478 330 LHIENAPQLVDISFRGVM-LTRVRNVVGPITSCFPQLKTLELDSCD---ELYAQFS--EHELPNLTHLHLRVATLNRESL 403 (509)
Q Consensus 330 ~~~~~~~~L~~l~i~~~~-~~~~~~~~~~l~~~l~~L~~L~L~~~~---~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~ 403 (509)
..+...|.|+++.+..+. .......+..-+..+++|+.|+|.... +....+. ++.+++|+.|++..+.....+.
T Consensus 179 ~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga 258 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGA 258 (382)
T ss_pred HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccH
Confidence 245566888888887721 111112233344678999999998322 1111222 7888999999997665544454
Q ss_pred HHHH-HHhhcCCCCcEEEEEEeecCCccCCccccCcc--ccCCccEEEEeccc
Q 010478 404 LGLA-SIMKACPFLQTLIVQFDYNGYKVGRRRKVPRH--SHQHLKLVELHGFL 453 (509)
Q Consensus 404 ~~l~-~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~c--~~~~Lk~V~i~~f~ 453 (509)
.++. .+-+..|+|+.|.+.+..-...-. ..+..| -..+|+.+.+.|.+
T Consensus 259 ~a~~~al~~~~p~L~vl~l~gNeIt~da~--~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 259 IAFVDALKESAPSLEVLELAGNEITRDAA--LALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHHhccCCCCceeccCcchhHHHHH--HHHHHHHhcchhhHHhcCCccc
Confidence 4444 466678999999998852110000 000011 14668888887754
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.73 E-value=2.7e-05 Score=77.85 Aligned_cols=231 Identities=17% Similarity=0.054 Sum_probs=104.8
Q ss_pred ccCcCCcEEEEeeEEEC--hhh---HHHHHhCCccccceeeecccceeeE-----EEecccccceEEEEecccCcc----
Q 010478 242 SGVKYLRSLRLFSVNVT--GEI---LEFILHNCPLLDQLSVVRSETLVSL-----KVVGSAIQLKHLRISTCYRLN---- 307 (509)
Q Consensus 242 ~~~p~Lk~L~L~~v~~~--~~~---l~~lls~CP~Le~L~L~~c~~~~~l-----~i~~~~~~Lk~L~l~~c~~l~---- 307 (509)
..+++|++|.+++..+. ... +...+..++.|++|+|.+|...... .+... ++|++|++.+|..-.
T Consensus 48 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~ 126 (319)
T cd00116 48 RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLR 126 (319)
T ss_pred hhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHH
Confidence 35677888888877765 232 3445566788888888887642110 11111 348888887775210
Q ss_pred EE---EEEC-CceeEEEEecCCcc------ceeeecCCCCceEEEEEeccchh-hhhhhcccccCCCCccEEEEeechh-
Q 010478 308 EI---KIST-PNLLSFKYFGPGQE------LKLHIENAPQLVDISFRGVMLTR-VRNVVGPITSCFPQLKTLELDSCDE- 375 (509)
Q Consensus 308 ~l---~i~a-P~L~~L~~~g~~~~------~~~~~~~~~~L~~l~i~~~~~~~-~~~~~~~l~~~l~~L~~L~L~~~~~- 375 (509)
.+ --.. |+|+.|.+.++.-. ....+..+++|+.+++....... ....+...+..+++|++|.++.+.-
T Consensus 127 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 127 LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 00 0012 66777777665410 00112334456665555421110 0000111122335666666654321
Q ss_pred -h-hhccC--CCCCCcccEEEEEeeccCccCHHHHHHHhhc----CCCCcEEEEEEeecCC-ccCCc-cccCccccCCcc
Q 010478 376 -L-YAQFS--EHELPNLTHLHLRVATLNRESLLGLASIMKA----CPFLQTLIVQFDYNGY-KVGRR-RKVPRHSHQHLK 445 (509)
Q Consensus 376 -~-~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~----~P~Le~L~i~~~~~~~-~~~~~-~~~p~c~~~~Lk 445 (509)
. ...+. ...+++|++|++..+. ....++..+.+. .+.|+.|++....-.. ....+ ..++. ..+|+
T Consensus 207 ~~~~~~l~~~~~~~~~L~~L~ls~n~---l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~--~~~L~ 281 (319)
T cd00116 207 DEGASALAETLASLKSLEVLNLGDNN---LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAE--KESLL 281 (319)
T ss_pred hHHHHHHHHHhcccCCCCEEecCCCc---CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhc--CCCcc
Confidence 0 01111 4445666666663322 222233333333 2566666665531000 00000 01111 14555
Q ss_pred EEEEeccc-CCccHHHHHHHHHhcCccCCcEEEE
Q 010478 446 LVELHGFL-GRPIDLELAFYILENAMTLEKMVVN 478 (509)
Q Consensus 446 ~V~i~~f~-g~~~e~~l~~~lL~na~~Le~m~I~ 478 (509)
.+.+.+-. +.+.+..+++-+..+.+.|+.+.|.
T Consensus 282 ~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (319)
T cd00116 282 ELDLRGNKFGEEGAQLLAESLLEPGNELESLWVK 315 (319)
T ss_pred EEECCCCCCcHHHHHHHHHHHhhcCCchhhcccC
Confidence 55554421 2233455555555555666655543
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.56 E-value=0.0001 Score=86.49 Aligned_cols=100 Identities=19% Similarity=0.177 Sum_probs=60.5
Q ss_pred cCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEE---ECCceeEE
Q 010478 243 GVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKI---STPNLLSF 319 (509)
Q Consensus 243 ~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i---~aP~L~~L 319 (509)
.+.+|+.|+|.+..+.. +..-+..+++|+.|+|.+|..+..+.--+.+++|+.|.+.+|..+..+.. ..++|+.|
T Consensus 609 ~~~~L~~L~L~~s~l~~--L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 609 RPENLVKLQMQGSKLEK--LWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred CccCCcEEECcCccccc--cccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 45688888887765532 22223568888888888876554332223347888888888876554432 35778888
Q ss_pred EEecCCc--cceeeecCCCCceEEEEEe
Q 010478 320 KYFGPGQ--ELKLHIENAPQLVDISFRG 345 (509)
Q Consensus 320 ~~~g~~~--~~~~~~~~~~~L~~l~i~~ 345 (509)
.+.++.. ..+.. .++++|+.+.+..
T Consensus 687 ~L~~c~~L~~Lp~~-i~l~sL~~L~Lsg 713 (1153)
T PLN03210 687 DMSRCENLEILPTG-INLKSLYRLNLSG 713 (1153)
T ss_pred eCCCCCCcCccCCc-CCCCCCCEEeCCC
Confidence 8877641 11111 1455666666554
No 14
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.50 E-value=8.1e-05 Score=86.29 Aligned_cols=171 Identities=19% Similarity=0.126 Sum_probs=99.2
Q ss_pred cCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeE-EEecccccceEEEEecccCccEE---EEECCceeE
Q 010478 243 GVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSL-KVVGSAIQLKHLRISTCYRLNEI---KISTPNLLS 318 (509)
Q Consensus 243 ~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l-~i~~~~~~Lk~L~l~~c~~l~~l---~i~aP~L~~ 318 (509)
.+++|+.|+|++..+.+..- ....+.|+.|+|.++.....+ ..-..+++|+.|++.++.....+ --..++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p---~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 192 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIP---RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192 (968)
T ss_pred cCCCCCEEECcCCccccccC---ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence 56788888887766643211 134677888888877532211 11123478888888877522211 124677888
Q ss_pred EEEecCCc--cceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEE
Q 010478 319 FKYFGPGQ--ELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLR 394 (509)
Q Consensus 319 L~~~g~~~--~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~ 394 (509)
|.+.++.- ..+-.++++++|+.+++..... ...+...+..+++|++|++..+. +....| +..+++|++|+|.
T Consensus 193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l---~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~ 268 (968)
T PLN00113 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNL---SGEIPYEIGGLTSLNHLDLVYNN-LTGPIPSSLGNLKNLQYLFLY 268 (968)
T ss_pred eeccCCCCcCcCChHHcCcCCccEEECcCCcc---CCcCChhHhcCCCCCEEECcCce-eccccChhHhCCCCCCEEECc
Confidence 88876651 1233456777888887765211 11112223567888888887443 222333 6677888988885
Q ss_pred eeccCccCHHHHHHHhhcCCCCcEEEEEEe
Q 010478 395 VATLNRESLLGLASIMKACPFLQTLIVQFD 424 (509)
Q Consensus 395 ~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~ 424 (509)
.+.... .+..-+...++|+.|++...
T Consensus 269 ~n~l~~----~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 269 QNKLSG----PIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred CCeeec----cCchhHhhccCcCEEECcCC
Confidence 432211 12333456788999988653
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.20 E-value=0.00045 Score=69.01 Aligned_cols=220 Identities=17% Similarity=0.092 Sum_probs=114.5
Q ss_pred cCcCCcEEEEeeEEEChhh---HHHHHhCCccccceeeeccccee---eE-EEecccccceEEEEecccCccEEEEECCc
Q 010478 243 GVKYLRSLRLFSVNVTGEI---LEFILHNCPLLDQLSVVRSETLV---SL-KVVGSAIQLKHLRISTCYRLNEIKISTPN 315 (509)
Q Consensus 243 ~~p~Lk~L~L~~v~~~~~~---l~~lls~CP~Le~L~L~~c~~~~---~l-~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~ 315 (509)
.+++|+.|.|.++.+++.. +...+...|.|++|.+.++.... .+ .+..... ..++
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~------------------~~~~ 82 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT------------------KGCG 82 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHH------------------hcCc
Confidence 4566888888888876653 45556667778888887654221 00 0000000 1334
Q ss_pred eeEEEEecCCcc--ceeeecCC---CCceEEEEEeccch-hhhhhhcccccCC-CCccEEEEeechhh---hhccC--CC
Q 010478 316 LLSFKYFGPGQE--LKLHIENA---PQLVDISFRGVMLT-RVRNVVGPITSCF-PQLKTLELDSCDEL---YAQFS--EH 383 (509)
Q Consensus 316 L~~L~~~g~~~~--~~~~~~~~---~~L~~l~i~~~~~~-~~~~~~~~l~~~l-~~L~~L~L~~~~~~---~~~~~--~~ 383 (509)
|+.|.+.++.-. ....+... ++|+++++...... .....+...+..+ ++|+.|.+..+.-. ...+. +.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 444444433310 01111122 56999999873221 1111122233455 89999999865411 01111 55
Q ss_pred CCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecC-CccCCccccCccccCCccEEEEecccCCc-cHHHH
Q 010478 384 ELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNG-YKVGRRRKVPRHSHQHLKLVELHGFLGRP-IDLEL 461 (509)
Q Consensus 384 ~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~-~~~~~~~~~p~c~~~~Lk~V~i~~f~g~~-~e~~l 461 (509)
.+++|++|++..+...+.....+...+...++|+.|++....-. .....+... -....+|+.+.+.+..-.. .-..+
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~-~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET-LASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH-hcccCCCCEEecCCCcCchHHHHHH
Confidence 66789999996543322222234444556679999999764210 000000000 1124789999998754333 22234
Q ss_pred HHHHHhcCccCCcEEEEecC
Q 010478 462 AFYILENAMTLEKMVVNRTN 481 (509)
Q Consensus 462 ~~~lL~na~~Le~m~I~~~~ 481 (509)
+..+....+.|+.+.+....
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 242 ASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHhccCCCceEEEccCCC
Confidence 44444456889999987543
No 16
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.13 E-value=0.00031 Score=81.46 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=30.9
Q ss_pred cCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478 360 SCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQF 423 (509)
Q Consensus 360 ~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~ 423 (509)
..+++|+.|.+..+. +....+ ...+++|+.|+|..+.... .+...+...++|+.|++..
T Consensus 305 ~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~p~~l~~~~~L~~L~Ls~ 365 (968)
T PLN00113 305 IQLQNLEILHLFSNN-FTGKIPVALTSLPRLQVLQLWSNKFSG----EIPKNLGKHNNLTVLDLST 365 (968)
T ss_pred cCCCCCcEEECCCCc-cCCcCChhHhcCCCCCEEECcCCCCcC----cCChHHhCCCCCcEEECCC
Confidence 455666666665322 112222 4556677777774332110 1334455667777777754
No 17
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.09 E-value=0.00012 Score=77.55 Aligned_cols=39 Identities=23% Similarity=0.471 Sum_probs=28.7
Q ss_pred ccCCCCcHHHHHHHHcCCChhhHHHHHhhhhhhhhhccc
Q 010478 112 DLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTF 150 (509)
Q Consensus 112 D~is~LPdeiL~~ILs~Lp~~d~~rts~lSrRWr~lw~~ 150 (509)
+.....|++....+....+..+...+..+.++|......
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (482)
T KOG1947|consen 43 RFTLLLPDELLADLLLKLVVLDRESVSLVTRLWLTLLGS 81 (482)
T ss_pred eeeeccccchhhhcccccccccccccchhhhhhhhhhhh
Confidence 446677888888888888877777777888888765443
No 18
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=97.09 E-value=0.00069 Score=40.55 Aligned_cols=25 Identities=44% Similarity=0.638 Sum_probs=22.8
Q ss_pred CCcEEEEeeEEEChh-hHHHHHhCCc
Q 010478 246 YLRSLRLFSVNVTGE-ILEFILHNCP 270 (509)
Q Consensus 246 ~Lk~L~L~~v~~~~~-~l~~lls~CP 270 (509)
+||+|+|..|.|.++ .++.++|+||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 599999999999876 6999999998
No 19
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.81 E-value=4.4e-05 Score=80.85 Aligned_cols=64 Identities=28% Similarity=0.396 Sum_probs=41.0
Q ss_pred ccCcCCcEEEEeeEE-EChhhHHHHHhCCccccceeeecccceee---EEEecccccceEEEEecccC
Q 010478 242 SGVKYLRSLRLFSVN-VTGEILEFILHNCPLLDQLSVVRSETLVS---LKVVGSAIQLKHLRISTCYR 305 (509)
Q Consensus 242 ~~~p~Lk~L~L~~v~-~~~~~l~~lls~CP~Le~L~L~~c~~~~~---l~i~~~~~~Lk~L~l~~c~~ 305 (509)
..+++|+.|+|..+. ++|..+..+...||.||.|.+.+|..++. ..+...++.|++|++..|..
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 345777777777666 67777777777777777777777765332 13334456677777766664
No 20
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=7.7e-05 Score=74.84 Aligned_cols=179 Identities=17% Similarity=0.150 Sum_probs=111.1
Q ss_pred CccCcCCcEEEEeeEEECh-hhHHHHHhCCccccceeeecccce--eeEEEecccccceEEEEecccC----ccEEEEEC
Q 010478 241 LSGVKYLRSLRLFSVNVTG-EILEFILHNCPLLDQLSVVRSETL--VSLKVVGSAIQLKHLRISTCYR----LNEIKIST 313 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~-~~l~~lls~CP~Le~L~L~~c~~~--~~l~i~~~~~~Lk~L~l~~c~~----l~~l~i~a 313 (509)
...||+++.|+|+.--|.. ..+..++...|+||.|+|+.-... ..-.....++.||.|.+..|.- +..+....
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 4578999999999877765 558889999999999999875321 1111222458999999999972 44566778
Q ss_pred CceeEEEEecCCc--cceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhh-hccC------CCC
Q 010478 314 PNLLSFKYFGPGQ--ELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELY-AQFS------EHE 384 (509)
Q Consensus 314 P~L~~L~~~g~~~--~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~-~~~~------~~~ 384 (509)
|+|+.|.+.+... ...........|+++++..... .++........+|.|+.|.++.+.--. ...+ ...
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l--i~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~ 299 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL--IDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT 299 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcc--cccccccccccccchhhhhccccCcchhcCCCccchhhhcc
Confidence 9999998887731 0111222344577777765211 111111233567888888887543110 1111 467
Q ss_pred CCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEe
Q 010478 385 LPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFD 424 (509)
Q Consensus 385 f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~ 424 (509)
|++|++|.+..+... ++. -..=++..++|+.|.+...
T Consensus 300 f~kL~~L~i~~N~I~--~w~-sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 300 FPKLEYLNISENNIR--DWR-SLNHLRTLENLKHLRITLN 336 (505)
T ss_pred cccceeeecccCccc--ccc-ccchhhccchhhhhhcccc
Confidence 889999998554321 121 1233455677777777665
No 21
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.00035 Score=70.25 Aligned_cols=178 Identities=17% Similarity=0.176 Sum_probs=94.7
Q ss_pred cCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeeccc---ceeeEEEecccccceEEEEeccc----CccEEEEECCc
Q 010478 243 GVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSE---TLVSLKVVGSAIQLKHLRISTCY----RLNEIKISTPN 315 (509)
Q Consensus 243 ~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~---~~~~l~i~~~~~~Lk~L~l~~c~----~l~~l~i~aP~ 315 (509)
.+..|+...|.+..+.+...+.....||++.+|+|+.-- .....+|...+++|+.|.++.-. .-.......+.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 456777777777666554444556667777777777631 11233555566777777776432 12233345677
Q ss_pred eeEEEEecCCc---cceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhh-hhccC-CCCCCcccE
Q 010478 316 LLSFKYFGPGQ---ELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDEL-YAQFS-EHELPNLTH 390 (509)
Q Consensus 316 L~~L~~~g~~~---~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~-~~~~~-~~~f~~Lk~ 390 (509)
|+.|.+.+|.- .+.......|+|+.+++..+..-.....-. .-+..|+.|+|+...-+ ....+ ...|++|..
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~---~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATST---KILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchh---hhhhHHhhccccCCcccccccccccccccchhh
Confidence 77777777761 122234557777777766521100000000 12345777777643332 12222 566777777
Q ss_pred EEEEeeccCccC--HHHHHHHhhcCCCCcEEEEEE
Q 010478 391 LHLRVATLNRES--LLGLASIMKACPFLQTLIVQF 423 (509)
Q Consensus 391 L~L~~~~~~~~~--~~~l~~lL~~~P~Le~L~i~~ 423 (509)
|++..+.-.... +.........+|+|+.|.+.-
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~ 310 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE 310 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeeccc
Confidence 777444321111 111233456677777777765
No 22
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.39 E-value=0.0011 Score=73.06 Aligned_cols=204 Identities=19% Similarity=0.199 Sum_probs=108.7
Q ss_pred CcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEe----------------cccccceEEEEecccC--
Q 010478 244 VKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVV----------------GSAIQLKHLRISTCYR-- 305 (509)
Q Consensus 244 ~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~----------------~~~~~Lk~L~l~~c~~-- 305 (509)
.-+|++.+|.++......++-+...+ ||+|.|.++......... .+-.+|++|+|.+-..
T Consensus 59 ~f~ltki~l~~~~~~~~~~~~l~~~~--L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s 136 (699)
T KOG3665|consen 59 KFNLTKIDLKNVTLQHQTLEMLRKQD--LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFS 136 (699)
T ss_pred hheeEEeeccceecchhHHHHHhhcc--ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhh
Confidence 34677777777777766665544333 999999887654322111 0113566665554221
Q ss_pred ---ccEEEEECCceeEEEEecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCC
Q 010478 306 ---LNEIKISTPNLLSFKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSE 382 (509)
Q Consensus 306 ---l~~l~i~aP~L~~L~~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~ 382 (509)
...+.-..|+|++|.+.|.. . ....+.++...+|||..|+++++. +......
T Consensus 137 ~~W~~kig~~LPsL~sL~i~~~~----------------------~--~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GI 191 (699)
T KOG3665|consen 137 NGWPKKIGTMLPSLRSLVISGRQ----------------------F--DNDDFSQLCASFPNLRSLDISGTN-ISNLSGI 191 (699)
T ss_pred ccHHHHHhhhCcccceEEecCce----------------------e--cchhHHHHhhccCccceeecCCCC-ccCcHHH
Confidence 12223334555555444433 1 112245667788888888888433 2111115
Q ss_pred CCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCccccCCccEEEEecccCCccHHHHH
Q 010478 383 HELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPRHSHQHLKLVELHGFLGRPIDLELA 462 (509)
Q Consensus 383 ~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~c~~~~Lk~V~i~~f~g~~~e~~l~ 462 (509)
..+.||+.|.+..-.... ...+..++ ...+|+.|+|+.+............-+|..- |.++.+..+.|+.-.-+++
T Consensus 192 S~LknLq~L~mrnLe~e~--~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~-LpeLrfLDcSgTdi~~~~l 267 (699)
T KOG3665|consen 192 SRLKNLQVLSMRNLEFES--YQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMV-LPELRFLDCSGTDINEEIL 267 (699)
T ss_pred hccccHHHHhccCCCCCc--hhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhccc-CccccEEecCCcchhHHHH
Confidence 567777777774332211 11233333 3678888888876321110000001133211 3344444455777777888
Q ss_pred HHHHhcCccCCcEEEE
Q 010478 463 FYILENAMTLEKMVVN 478 (509)
Q Consensus 463 ~~lL~na~~Le~m~I~ 478 (509)
..+++.=+.|+.+..-
T Consensus 268 e~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 268 EELLNSHPNLQQIAAL 283 (699)
T ss_pred HHHHHhCccHhhhhhh
Confidence 8888888888888744
No 23
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.20 E-value=0.002 Score=70.90 Aligned_cols=132 Identities=15% Similarity=0.163 Sum_probs=79.8
Q ss_pred ccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEECCceeEEEE
Q 010478 242 SGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKY 321 (509)
Q Consensus 242 ~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~~ 321 (509)
.-||+|++|.+.++.+..+++..+..++|+|..|+++++. ++.+.--+.+++|+.|.+.+-. +
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L~mrnLe----------------~ 207 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVLSMRNLE----------------F 207 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHHhccCCC----------------C
Confidence 3589999999999999999999999999999999999974 3333222222344444332211 0
Q ss_pred ecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhh------hhccC-CCCCCcccEEEEE
Q 010478 322 FGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDEL------YAQFS-EHELPNLTHLHLR 394 (509)
Q Consensus 322 ~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~------~~~~~-~~~f~~Lk~L~L~ 394 (509)
.... .+. .+ -.+.+|+.|+++..... ...+. ...+|+||.|+.+
T Consensus 208 e~~~------------------------~l~----~L-F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 208 ESYQ------------------------DLI----DL-FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred Cchh------------------------hHH----HH-hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence 0000 001 11 13556666666622111 11111 4457788888885
Q ss_pred eeccCccCHHHHHHHhhcCCCCcEEEEE
Q 010478 395 VATLNRESLLGLASIMKACPFLQTLIVQ 422 (509)
Q Consensus 395 ~~~~~~~~~~~l~~lL~~~P~Le~L~i~ 422 (509)
++ +.+...+..+++.-|+|+...+-
T Consensus 259 gT---di~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 259 GT---DINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred Cc---chhHHHHHHHHHhCccHhhhhhh
Confidence 43 34555678888888888877643
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.12 E-value=0.0023 Score=58.04 Aligned_cols=64 Identities=22% Similarity=0.138 Sum_probs=31.6
Q ss_pred cCCCCccEEEEeech--hhhhccCCCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEe
Q 010478 360 SCFPQLKTLELDSCD--ELYAQFSEHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFD 424 (509)
Q Consensus 360 ~~l~~L~~L~L~~~~--~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~ 424 (509)
..+|+|++|.++... ++....+...+++|+.|+|..+..... ...-..++..+|+|+.|+-.-.
T Consensus 85 ~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEET
T ss_pred HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEEc
Confidence 357888888887321 122222266788999999965543322 2235678889999999987654
No 25
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=95.93 E-value=0.0012 Score=68.76 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=21.6
Q ss_pred CCccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeec
Q 010478 240 ELSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVR 279 (509)
Q Consensus 240 ~~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~ 279 (509)
.|.++.+|.+|.|++-+++.-- ...+.+.|.||.|.|.+
T Consensus 192 ~F~~lnsL~tlkLsrNrittLp-~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRNRITTLP-QRSFKRLPKLESLDLNR 230 (873)
T ss_pred cccccchheeeecccCcccccC-HHHhhhcchhhhhhccc
Confidence 3455666666666665554321 12344566666666654
No 26
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=0.01 Score=57.26 Aligned_cols=218 Identities=13% Similarity=0.111 Sum_probs=113.9
Q ss_pred cCcCCcEEEEeeEEECh-hhHHHHHhCCccccceeeecccceeeE-EEecccccceEEEEecccC----ccEEEEECCce
Q 010478 243 GVKYLRSLRLFSVNVTG-EILEFILHNCPLLDQLSVVRSETLVSL-KVVGSAIQLKHLRISTCYR----LNEIKISTPNL 316 (509)
Q Consensus 243 ~~p~Lk~L~L~~v~~~~-~~l~~lls~CP~Le~L~L~~c~~~~~l-~i~~~~~~Lk~L~l~~c~~----l~~l~i~aP~L 316 (509)
.+..++.|+|.+-.+++ .++..++.+.|+|+.|+|+.-.--..+ ..+.+..+|+.|.+.+..- ++..--+-|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 45778888888888887 468899999999999999765432222 2223446788888776541 22222234555
Q ss_pred eEEEEecCCc-----cceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechh--hhhccCCCCCCccc
Q 010478 317 LSFKYFGPGQ-----ELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDE--LYAQFSEHELPNLT 389 (509)
Q Consensus 317 ~~L~~~g~~~-----~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~--~~~~~~~~~f~~Lk 389 (509)
+.|..++... .....-.-.+.+..++...+.. .......++.+-+||+..+.+..|+- ....-....|+.+-
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~-~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLE-QLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHH-HHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 5554444320 0000000011222222221110 11112335667789999998875531 10000033444444
Q ss_pred EEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCc--cCCccccCccccCCccEEEEecc------cCCccHHHH
Q 010478 390 HLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYK--VGRRRKVPRHSHQHLKLVELHGF------LGRPIDLEL 461 (509)
Q Consensus 390 ~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~--~~~~~~~p~c~~~~Lk~V~i~~f------~g~~~e~~l 461 (509)
-|+|..+.- .++ +-..-|..+|.|..|.+.-+.--++ +++.+.+ +...|..|++.+= .-...|..|
T Consensus 228 ~LnL~~~~i--dsw-asvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~l---lIaRL~~v~vLNGskIss~er~dSEr~f 301 (418)
T KOG2982|consen 228 CLNLGANNI--DSW-ASVDALNGFPQLVDLRVSENPLSDPLRGGERRFL---LIARLTKVQVLNGSKISSRERKDSERRF 301 (418)
T ss_pred hhhhccccc--ccH-HHHHHHcCCchhheeeccCCcccccccCCcceEE---EEeeccceEEecCcccchhhhhhhHHHH
Confidence 566633321 122 2345677889999888876521111 2222222 2344555555431 123478999
Q ss_pred HHHHHh
Q 010478 462 AFYILE 467 (509)
Q Consensus 462 ~~~lL~ 467 (509)
++|.++
T Consensus 302 VRyym~ 307 (418)
T KOG2982|consen 302 VRYYMS 307 (418)
T ss_pred HHHHhh
Confidence 999886
No 27
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=95.27 E-value=0.0028 Score=66.18 Aligned_cols=13 Identities=15% Similarity=0.020 Sum_probs=9.0
Q ss_pred cCCCCcEEEEEEe
Q 010478 412 ACPFLQTLIVQFD 424 (509)
Q Consensus 412 ~~P~Le~L~i~~~ 424 (509)
-|++|+.|+++..
T Consensus 315 ftqkL~~LdLs~N 327 (873)
T KOG4194|consen 315 FTQKLKELDLSSN 327 (873)
T ss_pred hcccceeEecccc
Confidence 4677777777664
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=94.50 E-value=0.016 Score=57.06 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=17.0
Q ss_pred CcCCcEEEEeeEEEChh---hHHHHHhCCccccceeeec
Q 010478 244 VKYLRSLRLFSVNVTGE---ILEFILHNCPLLDQLSVVR 279 (509)
Q Consensus 244 ~p~Lk~L~L~~v~~~~~---~l~~lls~CP~Le~L~L~~ 279 (509)
...+++|+|++-.|..+ .+...+.+-+.|++-++++
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd 67 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD 67 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh
Confidence 34555555555555433 2444444444444444433
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=94.37 E-value=0.11 Score=58.09 Aligned_cols=130 Identities=19% Similarity=0.136 Sum_probs=69.5
Q ss_pred CcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEECCceeEEEEec
Q 010478 244 VKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYFG 323 (509)
Q Consensus 244 ~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~~~g 323 (509)
.++|++|+|++..++. +. ...+.|+.|+|.++. +..+ .....+|+.|.+.++. +..+....|+|+.|.+++
T Consensus 241 p~~Lk~LdLs~N~Lts--LP---~lp~sL~~L~Ls~N~-L~~L--p~lp~~L~~L~Ls~N~-Lt~LP~~p~~L~~LdLS~ 311 (788)
T PRK15387 241 PPELRTLEVSGNQLTS--LP---VLPPGLLELSIFSNP-LTHL--PALPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSD 311 (788)
T ss_pred CCCCcEEEecCCccCc--cc---CcccccceeeccCCc-hhhh--hhchhhcCEEECcCCc-cccccccccccceeECCC
Confidence 4788999998766553 11 124688888888774 2222 1112578888887765 555544557888888877
Q ss_pred CCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEE
Q 010478 324 PGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLR 394 (509)
Q Consensus 324 ~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~ 394 (509)
.. ..-.-...++|..+.+..+ .+..++....+|+.|+|+.+ .+ ..+| ....+|+.|.+.
T Consensus 312 N~--L~~Lp~lp~~L~~L~Ls~N-------~L~~LP~lp~~Lq~LdLS~N-~L-s~LP-~lp~~L~~L~Ls 370 (788)
T PRK15387 312 NQ--LASLPALPSELCKLWAYNN-------QLTSLPTLPSGLQELSVSDN-QL-ASLP-TLPSELYKLWAY 370 (788)
T ss_pred Cc--cccCCCCcccccccccccC-------ccccccccccccceEecCCC-cc-CCCC-CCCcccceehhh
Confidence 65 1110011223554444331 12223322246778887632 22 1222 123456666653
No 30
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=94.18 E-value=0.058 Score=60.23 Aligned_cols=205 Identities=13% Similarity=0.114 Sum_probs=105.9
Q ss_pred CcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEE-CCceeEEEEe
Q 010478 244 VKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKIS-TPNLLSFKYF 322 (509)
Q Consensus 244 ~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~-aP~L~~L~~~ 322 (509)
+++|+.|+|++..++. +..-+ .+.|+.|.|++|.. ..+...- ..+|+.|.+.++. +..+.-. .++|+.|.++
T Consensus 219 ~~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L~Ls~N~L-~~LP~~l-~s~L~~L~Ls~N~-L~~LP~~l~~sL~~L~Ls 291 (754)
T PRK15370 219 QGNIKTLYANSNQLTS--IPATL--PDTIQEMELSINRI-TELPERL-PSALQSLDLFHNK-ISCLPENLPEELRYLSVY 291 (754)
T ss_pred ccCCCEEECCCCcccc--CChhh--hccccEEECcCCcc-CcCChhH-hCCCCEEECcCCc-cCccccccCCCCcEEECC
Confidence 3688888888766542 11111 24788888888753 2221111 1468888887543 5444322 3578888887
Q ss_pred cCCccceeeecC-CCCceEEEEEeccchhhhhhhccccc-CCCCccEEEEeechhhhhccCCCCCCcccEEEEEeeccCc
Q 010478 323 GPGQELKLHIEN-APQLVDISFRGVMLTRVRNVVGPITS-CFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNR 400 (509)
Q Consensus 323 g~~~~~~~~~~~-~~~L~~l~i~~~~~~~~~~~~~~l~~-~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~~~ 400 (509)
++. ..-.... .++|+.+++..+. +..++. ..++|+.|.+..+. + ..+|..-.++|+.|+|..+...
T Consensus 292 ~N~--Lt~LP~~lp~sL~~L~Ls~N~-------Lt~LP~~l~~sL~~L~Ls~N~-L-t~LP~~l~~sL~~L~Ls~N~L~- 359 (754)
T PRK15370 292 DNS--IRTLPAHLPSGITHLNVQSNS-------LTALPETLPPGLKTLEAGENA-L-TSLPASLPPELQVLDVSKNQIT- 359 (754)
T ss_pred CCc--cccCcccchhhHHHHHhcCCc-------cccCCccccccceeccccCCc-c-ccCChhhcCcccEEECCCCCCC-
Confidence 765 1100011 1234444444311 112221 22578888887432 2 2233112368888888554211
Q ss_pred cCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCccccCCccEEEEecccCCccHHHHHHHHHhcCccCCcEEEEec
Q 010478 401 ESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPRHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVNRT 480 (509)
Q Consensus 401 ~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m~I~~~ 480 (509)
.+..-+ .++|+.|+|... .+..+|......|+.+.+.+..-. .--+-+..+....+.+..+.+...
T Consensus 360 ----~LP~~l--p~~L~~LdLs~N-------~Lt~LP~~l~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 360 ----VLPETL--PPTITTLDVSRN-------ALTNLPENLPAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred ----cCChhh--cCCcCEEECCCC-------cCCCCCHhHHHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCC
Confidence 111111 267888888762 333455545556777776653221 111223445566777887777654
Q ss_pred C
Q 010478 481 N 481 (509)
Q Consensus 481 ~ 481 (509)
.
T Consensus 426 p 426 (754)
T PRK15370 426 P 426 (754)
T ss_pred C
Confidence 3
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=93.73 E-value=0.069 Score=59.55 Aligned_cols=74 Identities=20% Similarity=0.149 Sum_probs=34.3
Q ss_pred CCCCccEEEEeechhhhhccCCCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCc--
Q 010478 361 CFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPR-- 438 (509)
Q Consensus 361 ~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~-- 438 (509)
...+|+.|+++.+. + ..+| ...++|+.|++..+.-. .+..+ ..+|+.|++.. +.+..+|.
T Consensus 380 l~~~L~~LdLs~N~-L-t~LP-~l~s~L~~LdLS~N~Ls-----sIP~l---~~~L~~L~Ls~-------NqLt~LP~sl 441 (788)
T PRK15387 380 LPSGLKELIVSGNR-L-TSLP-VLPSELKELMVSGNRLT-----SLPML---PSGLLSLSVYR-------NQLTRLPESL 441 (788)
T ss_pred cccccceEEecCCc-c-cCCC-CcccCCCEEEccCCcCC-----CCCcc---hhhhhhhhhcc-------CcccccChHH
Confidence 33467777776321 2 1222 12356777777443211 11111 12455554433 23334553
Q ss_pred cccCCccEEEEecc
Q 010478 439 HSHQHLKLVELHGF 452 (509)
Q Consensus 439 c~~~~Lk~V~i~~f 452 (509)
+.+.+|+.|.+.|-
T Consensus 442 ~~L~~L~~LdLs~N 455 (788)
T PRK15387 442 IHLSSETTVNLEGN 455 (788)
T ss_pred hhccCCCeEECCCC
Confidence 24567777777664
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=93.55 E-value=0.011 Score=53.70 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=5.9
Q ss_pred cCCcEEEEeeEEEChhhHHHHHhCCccccceeeeccc
Q 010478 245 KYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSE 281 (509)
Q Consensus 245 p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~ 281 (509)
-.++.|+|.+..++. ++.+-..+..|+.|+++++.
T Consensus 19 ~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~ 53 (175)
T PF14580_consen 19 VKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQ 53 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS-
T ss_pred ccccccccccccccc--ccchhhhhcCCCEEECCCCC
Confidence 345666666665543 22222234566666666653
No 33
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=93.26 E-value=0.052 Score=53.06 Aligned_cols=38 Identities=29% Similarity=0.506 Sum_probs=35.7
Q ss_pred cccccCCCCc----HHHHHHHHcCCChhhHHHHHhhhhhhhh
Q 010478 109 IVEDLMSLLP----DDILINIISRLPLKEAAKTSVLSSRWKY 146 (509)
Q Consensus 109 ~~~D~is~LP----deiL~~ILs~Lp~~d~~rts~lSrRWr~ 146 (509)
-..|.|+.|| |+|-..|||+|+..+...+-.|||+|++
T Consensus 70 LqrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r 111 (499)
T KOG0281|consen 70 LQRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKR 111 (499)
T ss_pred HHHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence 3568899999 9999999999999999999999999997
No 34
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=92.71 E-value=0.09 Score=53.27 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=32.9
Q ss_pred CCCCcHHHHHHHHcCCC-hhhHHHHHhhhhhhhhhcc
Q 010478 114 MSLLPDDILINIISRLP-LKEAAKTSVLSSRWKYLWT 149 (509)
Q Consensus 114 is~LPdeiL~~ILs~Lp-~~d~~rts~lSrRWr~lw~ 149 (509)
+++||+|+|..|..+|+ .-|.+|...|||.||..-.
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 88999999999999998 4799999999999998544
No 35
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.57 E-value=0.057 Score=51.62 Aligned_cols=172 Identities=17% Similarity=0.097 Sum_probs=97.9
Q ss_pred CCccCcCCcEEEEeeEEECh---hhHHHHHhCCccccceeeecccce--eeEEEecccccceEEEEecccCccEEEEECC
Q 010478 240 ELSGVKYLRSLRLFSVNVTG---EILEFILHNCPLLDQLSVVRSETL--VSLKVVGSAIQLKHLRISTCYRLNEIKISTP 314 (509)
Q Consensus 240 ~~~~~p~Lk~L~L~~v~~~~---~~l~~lls~CP~Le~L~L~~c~~~--~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~aP 314 (509)
....||+|.+.+|+.-.|.. +.+..++|+...|++|.+.+|-.- ..-+|. ..|.+|-. ..-.-+.|
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig---kal~~la~------nKKaa~kp 157 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG---KALFHLAY------NKKAADKP 157 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHH---HHHHHHHH------HhhhccCC
Confidence 34678999999998777654 458889999999999999998421 111222 11222211 11123678
Q ss_pred ceeEEEEecCC------ccceeeecCCCCceEEEEEecc-ch-hhhh-hhcccccCCCCccEEEEeechhh---hhccC-
Q 010478 315 NLLSFKYFGPG------QELKLHIENAPQLVDISFRGVM-LT-RVRN-VVGPITSCFPQLKTLELDSCDEL---YAQFS- 381 (509)
Q Consensus 315 ~L~~L~~~g~~------~~~~~~~~~~~~L~~l~i~~~~-~~-~~~~-~~~~l~~~l~~L~~L~L~~~~~~---~~~~~- 381 (509)
.|+++.+.... ......+..-..|+++.|..+. .. .... .+-+ +..+.+|+.|+|....-- ...+.
T Consensus 158 ~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~g-l~y~~~LevLDlqDNtft~~gS~~La~ 236 (388)
T COG5238 158 KLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLG-LFYSHSLEVLDLQDNTFTLEGSRYLAD 236 (388)
T ss_pred CceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHH-HHHhCcceeeeccccchhhhhHHHHHH
Confidence 88888765432 0011122333567888877621 11 1111 1111 134678999999842211 12222
Q ss_pred -CCCCCcccEEEEEeeccCccCHHHHHHHhhc-----CCCCcEEEEEEe
Q 010478 382 -EHELPNLTHLHLRVATLNRESLLGLASIMKA-----CPFLQTLIVQFD 424 (509)
Q Consensus 382 -~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~-----~P~Le~L~i~~~ 424 (509)
.+.+++|+.|.+..+.....+ ...+++. .|+|..|-.+..
T Consensus 237 al~~W~~lrEL~lnDClls~~G---~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 237 ALCEWNLLRELRLNDCLLSNEG---VKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred Hhcccchhhhccccchhhcccc---HHHHHHHhhhhcCCCccccccchh
Confidence 678888999999665544433 3444443 588887776653
No 36
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=91.13 E-value=0.15 Score=49.63 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=30.7
Q ss_pred ccCCCCcHHHHHHHHc-----CCChhhHHHHHhhhhhhhh
Q 010478 112 DLMSLLPDDILINIIS-----RLPLKEAAKTSVLSSRWKY 146 (509)
Q Consensus 112 D~is~LPdeiL~~ILs-----~Lp~~d~~rts~lSrRWr~ 146 (509)
+.|+.||||||..||. .|+.++..++|.|||.|+-
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~ 144 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK 144 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence 4578999999999986 5667999999999999985
No 37
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=91.06 E-value=0.14 Score=57.33 Aligned_cols=190 Identities=13% Similarity=0.126 Sum_probs=101.3
Q ss_pred cCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEE-CCceeEEEEec
Q 010478 245 KYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKIS-TPNLLSFKYFG 323 (509)
Q Consensus 245 p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~-aP~L~~L~~~g 323 (509)
++|+.|+|++..+.. +..-+ ...|+.|+++++ .++.+.-.- ..+|+.|.+.++. +..+... .++|+.|.+.+
T Consensus 241 ~~L~~L~Ls~N~L~~--LP~~l--~s~L~~L~Ls~N-~L~~LP~~l-~~sL~~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~ 313 (754)
T PRK15370 241 DTIQEMELSINRITE--LPERL--PSALQSLDLFHN-KISCLPENL-PEELRYLSVYDNS-IRTLPAHLPSGITHLNVQS 313 (754)
T ss_pred ccccEEECcCCccCc--CChhH--hCCCCEEECcCC-ccCcccccc-CCCCcEEECCCCc-cccCcccchhhHHHHHhcC
Confidence 579999999887653 11111 247999999865 344321111 2589999999875 5544322 24678887776
Q ss_pred CCccceeeecCCCCceEEEEEeccchhhhhhhcccccC-CCCccEEEEeechhhhhccCCCCCCcccEEEEEeeccCccC
Q 010478 324 PGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSC-FPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNRES 402 (509)
Q Consensus 324 ~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~-l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~~~~~ 402 (509)
+.- ..+...-.++|+.+.+..+. +..++.. .++|+.|+++.+. + ..+|..-.++|++|+|..+....
T Consensus 314 N~L-t~LP~~l~~sL~~L~Ls~N~-------Lt~LP~~l~~sL~~L~Ls~N~-L-~~LP~~lp~~L~~LdLs~N~Lt~-- 381 (754)
T PRK15370 314 NSL-TALPETLPPGLKTLEAGENA-------LTSLPASLPPELQVLDVSKNQ-I-TVLPETLPPTITTLDVSRNALTN-- 381 (754)
T ss_pred Ccc-ccCCccccccceeccccCCc-------cccCChhhcCcccEEECCCCC-C-CcCChhhcCCcCEEECCCCcCCC--
Confidence 651 01111123567777776522 1222222 2589999998543 2 22331123689999995543221
Q ss_pred HHHHHHHhhcCCCCcEEEEEEeecCCccCCccccC----cc--ccCCccEEEEecccCCccHHHHHHHH
Q 010478 403 LLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVP----RH--SHQHLKLVELHGFLGRPIDLELAFYI 465 (509)
Q Consensus 403 ~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p----~c--~~~~Lk~V~i~~f~g~~~e~~l~~~l 465 (509)
+..-+. +.|+.|++... .+..+| .+ ...++..+.+.+-.-....+.-++.+
T Consensus 382 ---LP~~l~--~sL~~LdLs~N-------~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~~L~~L 438 (754)
T PRK15370 382 ---LPENLP--AALQIMQASRN-------NLVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQNMQRL 438 (754)
T ss_pred ---CCHhHH--HHHHHHhhccC-------CcccCchhHHHHhhcCCCccEEEeeCCCccHHHHHHHHHh
Confidence 111111 24666666552 222233 22 23567788777643333444444333
No 38
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.78 E-value=0.021 Score=54.61 Aligned_cols=40 Identities=20% Similarity=0.177 Sum_probs=27.1
Q ss_pred CCCCCcccEEEEEeeccC-ccCHHHHHHHhhcCCCCcEEEE
Q 010478 382 EHELPNLTHLHLRVATLN-RESLLGLASIMKACPFLQTLIV 421 (509)
Q Consensus 382 ~~~f~~Lk~L~L~~~~~~-~~~~~~l~~lL~~~P~Le~L~i 421 (509)
+..+++|+.|.|..+.|. ..+-..=..+|+..|+|++|+=
T Consensus 84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 456777788888666653 3333345678888888888864
No 39
>PRK15386 type III secretion protein GogB; Provisional
Probab=89.42 E-value=0.64 Score=47.87 Aligned_cols=135 Identities=14% Similarity=0.202 Sum_probs=69.7
Q ss_pred HhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEE-ECCceeEEEEecCCccceeeecCCCCceEEEEE
Q 010478 266 LHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKI-STPNLLSFKYFGPGQELKLHIENAPQLVDISFR 344 (509)
Q Consensus 266 ls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i-~aP~L~~L~~~g~~~~~~~~~~~~~~L~~l~i~ 344 (509)
+..|+.|+.|.+++| .++.+. .-.++|++|.+.+|..+..+.- -.++|++|.+.++.. .. .-.+.|+.+.+.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~-L~---sLP~sLe~L~L~ 120 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLP--VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPE-IS---GLPESVRSLEIK 120 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccC--CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCccc-cc---ccccccceEEeC
Confidence 445788888888888 344332 1114688888888877654431 235788888777631 11 112346666664
Q ss_pred eccchhhhhhhcccccCCCCccEEEEeechhh-hhccCCCCC-CcccEEEEEeeccCccCHHHHHHHhhcC-CCCcEEEE
Q 010478 345 GVMLTRVRNVVGPITSCFPQLKTLELDSCDEL-YAQFSEHEL-PNLTHLHLRVATLNRESLLGLASIMKAC-PFLQTLIV 421 (509)
Q Consensus 345 ~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~-~~~~~~~~f-~~Lk~L~L~~~~~~~~~~~~l~~lL~~~-P~Le~L~i 421 (509)
..... .+..++ ++|+.|.+...... ....+ ..+ ++|++|.+..+ .... +.... ++|+.|.+
T Consensus 121 ~n~~~----~L~~LP---ssLk~L~I~~~n~~~~~~lp-~~LPsSLk~L~Is~c--~~i~------LP~~LP~SLk~L~l 184 (426)
T PRK15386 121 GSATD----SIKNVP---NGLTSLSINSYNPENQARID-NLISPSLKTLSLTGC--SNII------LPEKLPESLQSITL 184 (426)
T ss_pred CCCCc----ccccCc---chHhheeccccccccccccc-cccCCcccEEEecCC--Cccc------CcccccccCcEEEe
Confidence 32111 122233 35777776421111 11111 122 58999999542 2111 11112 47888888
Q ss_pred EE
Q 010478 422 QF 423 (509)
Q Consensus 422 ~~ 423 (509)
..
T Consensus 185 s~ 186 (426)
T PRK15386 185 HI 186 (426)
T ss_pred cc
Confidence 64
No 40
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=89.08 E-value=0.18 Score=34.38 Aligned_cols=35 Identities=31% Similarity=0.356 Sum_probs=26.7
Q ss_pred cCCcEEEEeeEEEChhhHHHHHhCCccccceeeeccc
Q 010478 245 KYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSE 281 (509)
Q Consensus 245 p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~ 281 (509)
++|+.|+|.+..+++ +...+++||+|+.|+++++.
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence 578999999888874 55557889999999999884
No 41
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.62 E-value=0.22 Score=48.30 Aligned_cols=86 Identities=22% Similarity=0.323 Sum_probs=58.8
Q ss_pred CCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC-C-CCCCcccEEEEEeeccCccCHHHHHHHhh
Q 010478 334 NAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS-E-HELPNLTHLHLRVATLNRESLLGLASIMK 411 (509)
Q Consensus 334 ~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~-~-~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~ 411 (509)
.+..++++++..+.-+.. ..+..++..+|.++.|.|+ |..+...+. . ....||+.|.|.++. .++.-+..++.
T Consensus 69 ~~~~v~elDL~~N~iSdW-seI~~ile~lP~l~~LNls-~N~L~s~I~~lp~p~~nl~~lVLNgT~---L~w~~~~s~l~ 143 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDW-SEIGAILEQLPALTTLNLS-CNSLSSDIKSLPLPLKNLRVLVLNGTG---LSWTQSTSSLD 143 (418)
T ss_pred HhhhhhhhhcccchhccH-HHHHHHHhcCccceEeecc-CCcCCCccccCcccccceEEEEEcCCC---CChhhhhhhhh
Confidence 356677777766322211 2234677899999999998 666644333 3 367899999995543 45556788999
Q ss_pred cCCCCcEEEEEEe
Q 010478 412 ACPFLQTLIVQFD 424 (509)
Q Consensus 412 ~~P~Le~L~i~~~ 424 (509)
..|.++.|+++..
T Consensus 144 ~lP~vtelHmS~N 156 (418)
T KOG2982|consen 144 DLPKVTELHMSDN 156 (418)
T ss_pred cchhhhhhhhccc
Confidence 9999999987664
No 42
>PRK15386 type III secretion protein GogB; Provisional
Probab=88.18 E-value=0.54 Score=48.41 Aligned_cols=68 Identities=18% Similarity=0.139 Sum_probs=33.1
Q ss_pred CCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEECCceeEEEEe
Q 010478 246 YLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYF 322 (509)
Q Consensus 246 ~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~~~ 322 (509)
+|+.|.++++.-- ..+...+ .+.|+.|.+.+|..+.. ++ ++|+.|.+.. .....+.---++|+.|.+.
T Consensus 73 sLtsL~Lsnc~nL-tsLP~~L--P~nLe~L~Ls~Cs~L~s--LP---~sLe~L~L~~-n~~~~L~~LPssLk~L~I~ 140 (426)
T PRK15386 73 ELTEITIENCNNL-TTLPGSI--PEGLEKLTVCHCPEISG--LP---ESVRSLEIKG-SATDSIKNVPNGLTSLSIN 140 (426)
T ss_pred CCcEEEccCCCCc-ccCCchh--hhhhhheEccCcccccc--cc---cccceEEeCC-CCCcccccCcchHhheecc
Confidence 5777777664210 0011111 34677777777755432 22 4566666642 2222333223456666554
No 43
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.30 E-value=0.066 Score=49.01 Aligned_cols=43 Identities=19% Similarity=0.226 Sum_probs=24.7
Q ss_pred ccCcCCcEEEEeeEE-EChhhHHHHHhCCccccceeeeccccee
Q 010478 242 SGVKYLRSLRLFSVN-VTGEILEFILHNCPLLDQLSVVRSETLV 284 (509)
Q Consensus 242 ~~~p~Lk~L~L~~v~-~~~~~l~~lls~CP~Le~L~L~~c~~~~ 284 (509)
.+++.++.|.+.+|. |.|..|+.+-.-.|+||.|+|++|..++
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence 355566666666554 4455555555556666666666665544
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=86.89 E-value=0.53 Score=34.26 Aligned_cols=34 Identities=38% Similarity=0.479 Sum_probs=16.8
Q ss_pred ccCCCCccEEEEeechhhhhccC--CCCCCcccEEEE
Q 010478 359 TSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHL 393 (509)
Q Consensus 359 ~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L 393 (509)
+.++++|++|.++ ...+...-+ +..+++|++|++
T Consensus 21 f~~l~~L~~L~l~-~N~l~~i~~~~f~~l~~L~~L~l 56 (61)
T PF13855_consen 21 FSNLPNLETLDLS-NNNLTSIPPDAFSNLPNLRYLDL 56 (61)
T ss_dssp TTTGTTESEEEET-SSSESEEETTTTTTSTTESEEEE
T ss_pred HcCCCCCCEeEcc-CCccCccCHHHHcCCCCCCEEeC
Confidence 3455666666665 222211111 455566666665
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=86.73 E-value=0.16 Score=37.11 Aligned_cols=35 Identities=26% Similarity=0.217 Sum_probs=14.9
Q ss_pred cCCcEEEEeeEEEChhhHHHHHhCCccccceeeecc
Q 010478 245 KYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRS 280 (509)
Q Consensus 245 p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c 280 (509)
|+|++|+|.+..++.- -...+.+++.|+.|+++++
T Consensus 1 p~L~~L~l~~n~l~~i-~~~~f~~l~~L~~L~l~~N 35 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEI-PPDSFSNLPNLETLDLSNN 35 (61)
T ss_dssp TTESEEEETSSTESEE-CTTTTTTGTTESEEEETSS
T ss_pred CcCcEEECCCCCCCcc-CHHHHcCCCCCCEeEccCC
Confidence 3455555554433210 0012344555555555543
No 46
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=85.75 E-value=0.26 Score=29.24 Aligned_cols=17 Identities=24% Similarity=0.581 Sum_probs=13.6
Q ss_pred Cccccceeeecccceee
Q 010478 269 CPLLDQLSVVRSETLVS 285 (509)
Q Consensus 269 CP~Le~L~L~~c~~~~~ 285 (509)
||.|++|+|.+|..+++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 78888888888887654
No 47
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.60 E-value=0.083 Score=48.37 Aligned_cols=60 Identities=22% Similarity=0.309 Sum_probs=40.3
Q ss_pred CcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeE---EEecccccceEEEEecccCcc
Q 010478 247 LRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSL---KVVGSAIQLKHLRISTCYRLN 307 (509)
Q Consensus 247 Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l---~i~~~~~~Lk~L~l~~c~~l~ 307 (509)
++.++-++..|..+.++. +.+++.++.|.+.+|..++++ .+....++|+.|+|++|+.++
T Consensus 103 IeaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred EEEEecCCchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence 344555555666666666 557999999999999877644 233344677777777777433
No 48
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=84.94 E-value=0.063 Score=56.88 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=11.0
Q ss_pred CCccccCccc--cCCccEEEEec
Q 010478 431 GRRRKVPRHS--HQHLKLVELHG 451 (509)
Q Consensus 431 ~~~~~~p~c~--~~~Lk~V~i~~ 451 (509)
+++..+|+|+ +.+|+.+.+.|
T Consensus 232 N~Lp~vPecly~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 232 NNLPIVPECLYKLRNLRRLNLSG 254 (1255)
T ss_pred cCCCcchHHHhhhhhhheeccCc
Confidence 4455566664 34555555544
No 49
>PF13013 F-box-like_2: F-box-like domain
Probab=82.42 E-value=1.4 Score=36.49 Aligned_cols=29 Identities=17% Similarity=-0.039 Sum_probs=26.3
Q ss_pred CCCCcHHHHHHHHcCCChhhHHHHHhhhh
Q 010478 114 MSLLPDDILINIISRLPLKEAAKTSVLSS 142 (509)
Q Consensus 114 is~LPdeiL~~ILs~Lp~~d~~rts~lSr 142 (509)
+.+||+||+..|+.+-...+....+..++
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 77999999999999999999988887776
No 50
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=81.41 E-value=0.86 Score=50.81 Aligned_cols=60 Identities=27% Similarity=0.358 Sum_probs=31.3
Q ss_pred cCCCCccEEEEeechhhhh-ccC-CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEe
Q 010478 360 SCFPQLKTLELDSCDELYA-QFS-EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFD 424 (509)
Q Consensus 360 ~~l~~L~~L~L~~~~~~~~-~~~-~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~ 424 (509)
..+++|+.++++ |.++.. .++ .-..++||+|++.++.....+ ..-|+.+.++..++++..
T Consensus 449 ~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d----~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 449 AQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTRLVFD----HKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCcccccc----hhhhHHhhhhhheecccC
Confidence 356677777776 555522 223 222378888888555322111 233444555555555543
No 51
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=80.02 E-value=0.043 Score=58.09 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=20.1
Q ss_pred CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478 382 EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQF 423 (509)
Q Consensus 382 ~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~ 423 (509)
...|..|+.|.|.-+. ...+..-+.-.|.|+.|+++-
T Consensus 335 lcRC~kL~kL~L~~Nr-----LiTLPeaIHlL~~l~vLDlre 371 (1255)
T KOG0444|consen 335 LCRCVKLQKLKLDHNR-----LITLPEAIHLLPDLKVLDLRE 371 (1255)
T ss_pred hhhhHHHHHhcccccc-----eeechhhhhhcCCcceeeccC
Confidence 5667777777773221 112334444456677776654
No 52
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=79.86 E-value=0.22 Score=47.33 Aligned_cols=58 Identities=24% Similarity=0.257 Sum_probs=34.7
Q ss_pred hCCccccceeeecccceeeEEEecccccceEEEEeccc-----CccEEEEECCceeEEEEecCC
Q 010478 267 HNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCY-----RLNEIKISTPNLLSFKYFGPG 325 (509)
Q Consensus 267 s~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~-----~l~~l~i~aP~L~~L~~~g~~ 325 (509)
-..-.|+.|++.+|...+....+. +++||.|.++.-. .+..+...+|+|+++.++|..
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~-Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPK-LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred ccccchhhhhhhccceeecccCCC-cchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 344456666666664433333332 3677777776542 144455567888888888876
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=79.35 E-value=3.7 Score=37.93 Aligned_cols=82 Identities=20% Similarity=0.197 Sum_probs=49.0
Q ss_pred CccCcCCcEEEEeeEEECh--hhHHHHHhCCccccceeeeccc--ceeeEEEecccccceEEEEeccc-----CccEEEE
Q 010478 241 LSGVKYLRSLRLFSVNVTG--EILEFILHNCPLLDQLSVVRSE--TLVSLKVVGSAIQLKHLRISTCY-----RLNEIKI 311 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~--~~l~~lls~CP~Le~L~L~~c~--~~~~l~i~~~~~~Lk~L~l~~c~-----~l~~l~i 311 (509)
+..+++|.+|.|.+-+|+. ..+..+ .|+|..|.|.+-. .++.+.--..|++|+.|++-+-+ +.....+
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~---~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl 136 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTF---LPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVL 136 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhh---ccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEE
Confidence 4467888999998777653 334443 4788888887743 23333333345777777776543 1222333
Q ss_pred -ECCceeEEEEecCC
Q 010478 312 -STPNLLSFKYFGPG 325 (509)
Q Consensus 312 -~aP~L~~L~~~g~~ 325 (509)
..|+|+.|++.+..
T Consensus 137 ~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 137 YKLPSLRTLDFQKVT 151 (233)
T ss_pred EecCcceEeehhhhh
Confidence 36777777666543
No 54
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=72.02 E-value=1.8 Score=46.54 Aligned_cols=40 Identities=25% Similarity=0.429 Sum_probs=36.5
Q ss_pred ccccccCCCCcHHHHHHHHcCCChhhHHHHHhhhhhhhhh
Q 010478 108 EIVEDLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYL 147 (509)
Q Consensus 108 ~~~~D~is~LPdeiL~~ILs~Lp~~d~~rts~lSrRWr~l 147 (509)
....|.++.||-|+..+||++|+.++.++.+.+|+.|+.+
T Consensus 102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 3456889999999999999999999999999999999863
No 55
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=71.41 E-value=0.92 Score=51.79 Aligned_cols=12 Identities=33% Similarity=0.365 Sum_probs=6.1
Q ss_pred CCCCCcccEEEE
Q 010478 382 EHELPNLTHLHL 393 (509)
Q Consensus 382 ~~~f~~Lk~L~L 393 (509)
...+.+|+.|.|
T Consensus 713 ~~~l~~L~~L~i 724 (889)
T KOG4658|consen 713 LGSLGNLEELSI 724 (889)
T ss_pred cccccCcceEEE
Confidence 344455555555
No 56
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=71.29 E-value=4.7 Score=28.30 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=29.5
Q ss_pred CCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEE
Q 010478 385 LPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQ 422 (509)
Q Consensus 385 f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~ 422 (509)
..+|+.+.+........+..-+..|+++++.|+++.|.
T Consensus 13 ~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 13 LSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred hheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 36899999965444455666678899999999999986
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=68.66 E-value=2.1 Score=46.78 Aligned_cols=17 Identities=24% Similarity=0.301 Sum_probs=11.7
Q ss_pred ccCcCCcEEEEeeEEEC
Q 010478 242 SGVKYLRSLRLFSVNVT 258 (509)
Q Consensus 242 ~~~p~Lk~L~L~~v~~~ 258 (509)
..|.+||.|.|.+|.+.
T Consensus 106 fpF~sLr~LElrg~~L~ 122 (1096)
T KOG1859|consen 106 FPFRSLRVLELRGCDLS 122 (1096)
T ss_pred ccccceeeEEecCcchh
Confidence 35677777777777654
No 58
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=68.23 E-value=2.8 Score=24.09 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=14.0
Q ss_pred CcCCcEEEEeeEEEChhhHHHH
Q 010478 244 VKYLRSLRLFSVNVTGEILEFI 265 (509)
Q Consensus 244 ~p~Lk~L~L~~v~~~~~~l~~l 265 (509)
+++|++|+|++..++++.+..+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3678888888888877766554
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=66.46 E-value=6 Score=36.59 Aligned_cols=98 Identities=19% Similarity=0.242 Sum_probs=53.4
Q ss_pred ccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeeccCccCHHHHHH--HhhcCCCCcEEEEEEeec-CCccCCc
Q 010478 359 TSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATLNRESLLGLAS--IMKACPFLQTLIVQFDYN-GYKVGRR 433 (509)
Q Consensus 359 ~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~--lL~~~P~Le~L~i~~~~~-~~~~~~~ 433 (509)
+..+++|.+|.|.. ..+...-| ...+++|+.|.|..+. +..+.. =|..||.|+.|.+..... +. ...
T Consensus 60 lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNs-----i~~l~dl~pLa~~p~L~~Ltll~Npv~~k--~~Y 131 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNS-----IQELGDLDPLASCPKLEYLTLLGNPVEHK--KNY 131 (233)
T ss_pred CCCccccceEEecC-CcceeeccchhhhccccceEEecCcc-----hhhhhhcchhccCCccceeeecCCchhcc--cCc
Confidence 35667788888773 22222223 5567788888885532 212222 345789999999877521 11 111
Q ss_pred cccCccccCCccEEEEecccCCccHHHHHHH
Q 010478 434 RKVPRHSHQHLKLVELHGFLGRPIDLELAFY 464 (509)
Q Consensus 434 ~~~p~c~~~~Lk~V~i~~f~g~~~e~~l~~~ 464 (509)
+..--|.+.+|+.+.+.+..-.+.+-....|
T Consensus 132 R~yvl~klp~l~~LDF~kVt~~ER~~A~~~f 162 (233)
T KOG1644|consen 132 RLYVLYKLPSLRTLDFQKVTRKEREEAEVFF 162 (233)
T ss_pred eeEEEEecCcceEeehhhhhHHHHHHHHHHh
Confidence 2112345666777766665555444444444
No 60
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=66.14 E-value=6.7 Score=44.97 Aligned_cols=61 Identities=23% Similarity=0.242 Sum_probs=30.0
Q ss_pred ccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478 357 PITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQF 423 (509)
Q Consensus 357 ~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~ 423 (509)
.++..+|.|..|+|+.+.+. ..+| ...+-+|++|++..+. ...++.-++....|..|+++.
T Consensus 565 ~ff~~m~~LrVLDLs~~~~l-~~LP~~I~~Li~LryL~L~~t~-----I~~LP~~l~~Lk~L~~Lnl~~ 627 (889)
T KOG4658|consen 565 EFFRSLPLLRVLDLSGNSSL-SKLPSSIGELVHLRYLDLSDTG-----ISHLPSGLGNLKKLIYLNLEV 627 (889)
T ss_pred HHHhhCcceEEEECCCCCcc-CcCChHHhhhhhhhcccccCCC-----ccccchHHHHHHhhheecccc
Confidence 33455666666666644333 2233 4445566666663321 123444455555555555554
No 61
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=63.16 E-value=6.8 Score=38.39 Aligned_cols=57 Identities=23% Similarity=0.198 Sum_probs=30.8
Q ss_pred cCCCCccEEEEeechhhhhccC-CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478 360 SCFPQLKTLELDSCDELYAQFS-EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQF 423 (509)
Q Consensus 360 ~~l~~L~~L~L~~~~~~~~~~~-~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~ 423 (509)
.-+|.++.|.++.. .+ ..+. ...+++|.+|+|+.+. ...+...=...-|+++|.+..
T Consensus 304 KL~Pkir~L~lS~N-~i-~~v~nLa~L~~L~~LDLS~N~-----Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 304 KLAPKLRRLILSQN-RI-RTVQNLAELPQLQLLDLSGNL-----LAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhccceeEEecccc-ce-eeehhhhhcccceEeecccch-----hHhhhhhHhhhcCEeeeehhh
Confidence 34577777777621 11 1111 5667788888885542 222223333455667776654
No 62
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=62.81 E-value=9.6 Score=37.37 Aligned_cols=98 Identities=19% Similarity=0.212 Sum_probs=51.8
Q ss_pred ceeEEEEecCC-ccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC-CCCCCcccEEE
Q 010478 315 NLLSFKYFGPG-QELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS-EHELPNLTHLH 392 (509)
Q Consensus 315 ~L~~L~~~g~~-~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~-~~~f~~Lk~L~ 392 (509)
.|+.+++++.. ...+.++.-.|.++.+.+..+.-...+ + +..+++|..|+|+.. .+..... -..+.|.|.|.
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~----n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ----N-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEeccccceeeeh----h-hhhcccceEeecccc-hhHhhhhhHhhhcCEeeee
Confidence 35566666554 112223344566666666652211111 2 466889999999832 1211111 45678899999
Q ss_pred EEeeccCccCHHHHHHHhhcCCCCcEEEEEEe
Q 010478 393 LRVATLNRESLLGLASIMKACPFLQTLIVQFD 424 (509)
Q Consensus 393 L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~ 424 (509)
|..+... -.+-|...=+|..|++...
T Consensus 359 La~N~iE------~LSGL~KLYSLvnLDl~~N 384 (490)
T KOG1259|consen 359 LAQNKIE------TLSGLRKLYSLVNLDLSSN 384 (490)
T ss_pred hhhhhHh------hhhhhHhhhhheecccccc
Confidence 8443211 1222344456777777664
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=62.15 E-value=29 Score=33.72 Aligned_cols=122 Identities=19% Similarity=0.139 Sum_probs=67.0
Q ss_pred ccccCCCCccEEEEeechh-h--hhccC--CCCCCcccEEEEEeeccCccCHHHHH---------HHhhcCCCCcEEEEE
Q 010478 357 PITSCFPQLKTLELDSCDE-L--YAQFS--EHELPNLTHLHLRVATLNRESLLGLA---------SIMKACPFLQTLIVQ 422 (509)
Q Consensus 357 ~l~~~l~~L~~L~L~~~~~-~--~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~---------~lL~~~P~Le~L~i~ 422 (509)
+.+..||+++..+|+...- . ...+. ...-.+|+||.+..+..+......+. .=....|.|+....-
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 4446788888888873211 1 11111 45667899999976655433322222 122346888877654
Q ss_pred Eee-cCCccCCccccCccccCCccEEEEecccCCccH--HHHHHHHHhcCccCCcEEEEec
Q 010478 423 FDY-NGYKVGRRRKVPRHSHQHLKLVELHGFLGRPID--LELAFYILENAMTLEKMVVNRT 480 (509)
Q Consensus 423 ~~~-~~~~~~~~~~~p~c~~~~Lk~V~i~~f~g~~~e--~~l~~~lL~na~~Le~m~I~~~ 480 (509)
-.. +..+...+... --.+..||+|+|. +.|.+.+ -.++-+=+..+..||.+.+...
T Consensus 166 rNRlengs~~~~a~~-l~sh~~lk~vki~-qNgIrpegv~~L~~~gl~y~~~LevLDlqDN 224 (388)
T COG5238 166 RNRLENGSKELSAAL-LESHENLKEVKIQ-QNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN 224 (388)
T ss_pred cchhccCcHHHHHHH-HHhhcCceeEEee-ecCcCcchhHHHHHHHHHHhCcceeeecccc
Confidence 321 11000000000 1135689999997 4455544 4566666778899999888743
No 64
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=59.30 E-value=0.3 Score=43.64 Aligned_cols=38 Identities=32% Similarity=0.333 Sum_probs=24.8
Q ss_pred CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEe
Q 010478 382 EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFD 424 (509)
Q Consensus 382 ~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~ 424 (509)
...+++|+.|.+. +.+...+..-+.....|++|+|++.
T Consensus 146 vg~lt~lqil~lr-----dndll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 146 VGKLTNLQILSLR-----DNDLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhhcceeEEeec-----cCchhhCcHHHHHHHHHHHHhcccc
Confidence 4455555555552 3456667777777788888888874
No 65
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=58.07 E-value=8.2 Score=39.31 Aligned_cols=96 Identities=19% Similarity=0.131 Sum_probs=61.1
Q ss_pred CCceeEEEEecCCc--cceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcc
Q 010478 313 TPNLLSFKYFGPGQ--ELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNL 388 (509)
Q Consensus 313 aP~L~~L~~~g~~~--~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~L 388 (509)
.|+|+.+++++..- -..-.|+++..++++.+..+. +.++-...+.++.+|+.|+|.. ..+....| +.....|
T Consensus 273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~---l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK---LEFVSSGMFQGLSGLKTLSLYD-NQITTVAPGAFQTLFSL 348 (498)
T ss_pred cccceEeccCCCccchhhhhhhcchhhhhhhhcCcch---HHHHHHHhhhccccceeeeecC-CeeEEEeccccccccee
Confidence 35666666665440 012246778888888887632 3344446678899999999983 33323333 6677788
Q ss_pred cEEEEEeec-cCccCHHHHHHHhhc
Q 010478 389 THLHLRVAT-LNRESLLGLASIMKA 412 (509)
Q Consensus 389 k~L~L~~~~-~~~~~~~~l~~lL~~ 412 (509)
..|++-.+. +-+....|+..-++.
T Consensus 349 ~~l~l~~Np~~CnC~l~wl~~Wlr~ 373 (498)
T KOG4237|consen 349 STLNLLSNPFNCNCRLAWLGEWLRK 373 (498)
T ss_pred eeeehccCcccCccchHHHHHHHhh
Confidence 888885442 235667788888775
No 66
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=55.63 E-value=3.4 Score=42.57 Aligned_cols=142 Identities=20% Similarity=0.200 Sum_probs=74.0
Q ss_pred CCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEE--ECCc-eeEEEEe
Q 010478 246 YLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKI--STPN-LLSFKYF 322 (509)
Q Consensus 246 ~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i--~aP~-L~~L~~~ 322 (509)
+|+.|++.+-.+.+- ..-+..+|.|+.|.+.++............+.|+.|.+.+.. +..+.- ..++ |+++.+.
T Consensus 141 nL~~L~l~~N~i~~l--~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIESL--PSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchhhh--hhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhc
Confidence 778887776655432 123567888999988888643322221123677788777665 444433 2334 7777666
Q ss_pred cCC-ccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEe
Q 010478 323 GPG-QELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRV 395 (509)
Q Consensus 323 g~~-~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~ 395 (509)
+.. -.....+.+...+..+.+..... . .+......+++++.|.+.. ..+........+.+|++|++..
T Consensus 218 ~N~~~~~~~~~~~~~~l~~l~l~~n~~---~-~~~~~~~~l~~l~~L~~s~-n~i~~i~~~~~~~~l~~L~~s~ 286 (394)
T COG4886 218 NNSIIELLSSLSNLKNLSGLELSNNKL---E-DLPESIGNLSNLETLDLSN-NQISSISSLGSLTNLRELDLSG 286 (394)
T ss_pred CCcceecchhhhhcccccccccCCcee---e-eccchhccccccceecccc-ccccccccccccCccCEEeccC
Confidence 652 11222233333443333222100 0 0013345566778777762 2221111156677788888744
No 67
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=52.61 E-value=18 Score=27.13 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=29.7
Q ss_pred CcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEe
Q 010478 386 PNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFD 424 (509)
Q Consensus 386 ~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~ 424 (509)
.+|+.+.+........+..-+..|++++|.|+++.|...
T Consensus 5 ~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~ 43 (72)
T smart00579 5 SSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVE 43 (72)
T ss_pred heEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEee
Confidence 468888886543344555667889999999999999885
No 68
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=50.32 E-value=12 Score=30.22 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=22.3
Q ss_pred ccCCCCcHHHHHHHHcCCChhhHHH
Q 010478 112 DLMSLLPDDILINIISRLPLKEAAK 136 (509)
Q Consensus 112 D~is~LPdeiL~~ILs~Lp~~d~~r 136 (509)
..|+.||.||-..||++|+.+|...
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 5699999999999999999988753
No 69
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=48.84 E-value=4.4 Score=45.52 Aligned_cols=33 Identities=36% Similarity=0.559 Sum_probs=22.8
Q ss_pred cccceEEEEecccCccEEEE----ECCceeEEEEecCC
Q 010478 292 AIQLKHLRISTCYRLNEIKI----STPNLLSFKYFGPG 325 (509)
Q Consensus 292 ~~~Lk~L~l~~c~~l~~l~i----~aP~L~~L~~~g~~ 325 (509)
++.|+.++++ |.+++.+.+ ..|+|++|+++|..
T Consensus 451 l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 451 LPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred cCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCc
Confidence 3677777776 444665543 23799999999886
No 70
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=48.21 E-value=3.2 Score=42.27 Aligned_cols=38 Identities=24% Similarity=0.307 Sum_probs=30.5
Q ss_pred CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEe
Q 010478 382 EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFD 424 (509)
Q Consensus 382 ~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~ 424 (509)
...+.+|+.|++. +.+...+..++.+|.+|+.|.+++.
T Consensus 501 l~nm~nL~tLDL~-----nNdlq~IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQ-----NNDLQQIPPILGNMTNLRHLELDGN 538 (565)
T ss_pred hhhhhhcceeccC-----CCchhhCChhhccccceeEEEecCC
Confidence 5567788888883 3567778899999999999999885
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=47.54 E-value=7.1 Score=37.38 Aligned_cols=41 Identities=24% Similarity=0.248 Sum_probs=30.4
Q ss_pred CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEe
Q 010478 382 EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFD 424 (509)
Q Consensus 382 ~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~ 424 (509)
+|.+++||+|.++.+.. ....++.-+++.||+|+.|++...
T Consensus 61 ~P~Lp~LkkL~lsdn~~--~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYR--RVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred CCCcchhhhhcccCCcc--cccccceehhhhCCceeEEeecCC
Confidence 77888999999855432 223357778888899999998875
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=46.45 E-value=10 Score=19.89 Aligned_cols=11 Identities=18% Similarity=0.232 Sum_probs=4.6
Q ss_pred cccceeeeccc
Q 010478 271 LLDQLSVVRSE 281 (509)
Q Consensus 271 ~Le~L~L~~c~ 281 (509)
+|+.|+|++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 44555555543
No 73
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=46.12 E-value=0.86 Score=40.83 Aligned_cols=85 Identities=20% Similarity=0.171 Sum_probs=40.0
Q ss_pred eeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhh-hhccC--CCCCCcccEEEEEeeccCccCHHH
Q 010478 329 KLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDEL-YAQFS--EHELPNLTHLHLRVATLNRESLLG 405 (509)
Q Consensus 329 ~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~-~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~ 405 (509)
+..+..+|+|+.+.++..... .+..=++++|.|+.|+|. ...+ ...+| +..+..|+.|.|+. .++.-
T Consensus 72 p~~issl~klr~lnvgmnrl~----~lprgfgs~p~levldlt-ynnl~e~~lpgnff~m~tlralyl~d-----ndfe~ 141 (264)
T KOG0617|consen 72 PTSISSLPKLRILNVGMNRLN----ILPRGFGSFPALEVLDLT-YNNLNENSLPGNFFYMTTLRALYLGD-----NDFEI 141 (264)
T ss_pred Chhhhhchhhhheecchhhhh----cCccccCCCchhhhhhcc-ccccccccCCcchhHHHHHHHHHhcC-----CCccc
Confidence 344556666666665542111 111222556777777776 2222 22233 33334555555532 23323
Q ss_pred HHHHhhcCCCCcEEEEEE
Q 010478 406 LASIMKACPFLQTLIVQF 423 (509)
Q Consensus 406 l~~lL~~~P~Le~L~i~~ 423 (509)
+..=.....+|+.|.+.-
T Consensus 142 lp~dvg~lt~lqil~lrd 159 (264)
T KOG0617|consen 142 LPPDVGKLTNLQILSLRD 159 (264)
T ss_pred CChhhhhhcceeEEeecc
Confidence 334444555666666543
No 74
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.09 E-value=3.4 Score=40.07 Aligned_cols=62 Identities=23% Similarity=0.238 Sum_probs=43.8
Q ss_pred ccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEe
Q 010478 359 TSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFD 424 (509)
Q Consensus 359 ~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~ 424 (509)
-..++.||.|+|+ ..++...-++..|.+|++|.|.-+ .+....=...|++.|+|++|.|.-.
T Consensus 37 c~kMp~lEVLsLS-vNkIssL~pl~rCtrLkElYLRkN---~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 37 CEKMPLLEVLSLS-VNKISSLAPLQRCTRLKELYLRKN---CIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HHhcccceeEEee-ccccccchhHHHHHHHHHHHHHhc---ccccHHHHHHHhcCchhhhHhhccC
Confidence 3568889999998 333433333778899999999443 2333344667899999999998754
No 75
>PLN03150 hypothetical protein; Provisional
Probab=40.00 E-value=13 Score=41.16 Aligned_cols=79 Identities=15% Similarity=0.127 Sum_probs=45.4
Q ss_pred CCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEE-EecccccceEEEEecccCccEEE---EECCceeEEEE
Q 010478 246 YLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLK-VVGSAIQLKHLRISTCYRLNEIK---ISTPNLLSFKY 321 (509)
Q Consensus 246 ~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~-i~~~~~~Lk~L~l~~c~~l~~l~---i~aP~L~~L~~ 321 (509)
.++.|+|.+..+... +..-+..++.|+.|+|.++.-...+. .-..+++|+.|++.++..-..+. -..++|+.|.+
T Consensus 419 ~v~~L~L~~n~L~g~-ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGF-IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCcccc-CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 366677766555432 22335677888888888764322211 11234778888887765221211 24677888887
Q ss_pred ecCC
Q 010478 322 FGPG 325 (509)
Q Consensus 322 ~g~~ 325 (509)
.+..
T Consensus 498 s~N~ 501 (623)
T PLN03150 498 NGNS 501 (623)
T ss_pred cCCc
Confidence 7654
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=36.66 E-value=12 Score=31.34 Aligned_cols=12 Identities=25% Similarity=0.437 Sum_probs=5.9
Q ss_pred cCCCCccEEEEe
Q 010478 360 SCFPQLKTLELD 371 (509)
Q Consensus 360 ~~l~~L~~L~L~ 371 (509)
..+++++.+.+.
T Consensus 78 ~~~~~l~~i~~~ 89 (129)
T PF13306_consen 78 SNCTNLKNIDIP 89 (129)
T ss_dssp TT-TTECEEEET
T ss_pred cccccccccccC
Confidence 345556665553
No 77
>PLN03150 hypothetical protein; Provisional
Probab=32.71 E-value=32 Score=37.99 Aligned_cols=62 Identities=21% Similarity=0.304 Sum_probs=33.9
Q ss_pred eecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEee
Q 010478 331 HIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVA 396 (509)
Q Consensus 331 ~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~ 396 (509)
.+..+++|+.+++..... ...+...+..+++|+.|+|+.+ .+...+| ...+++|++|+|..+
T Consensus 437 ~i~~L~~L~~L~Ls~N~l---~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 437 DISKLRHLQSINLSGNSI---RGNIPPSLGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRILNLNGN 500 (623)
T ss_pred HHhCCCCCCEEECCCCcc---cCcCChHHhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCEEECcCC
Confidence 345566677766654211 1112223356677787777732 2333344 566777888877543
No 78
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=31.87 E-value=29 Score=19.37 Aligned_cols=9 Identities=22% Similarity=0.379 Sum_probs=4.9
Q ss_pred ccceeeecc
Q 010478 272 LDQLSVVRS 280 (509)
Q Consensus 272 Le~L~L~~c 280 (509)
||+|+|++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 455555555
No 79
>COG4829 CatC1 Muconolactone delta-isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.94 E-value=24 Score=27.49 Aligned_cols=35 Identities=23% Similarity=0.478 Sum_probs=24.4
Q ss_pred CcHHHHHHHHcCCChhhHHHHHhhhh--hhhhhcccC
Q 010478 117 LPDDILINIISRLPLKEAAKTSVLSS--RWKYLWTFT 151 (509)
Q Consensus 117 LPdeiL~~ILs~Lp~~d~~rts~lSr--RWr~lw~~~ 151 (509)
+||+.=.....++.++|.++..-|-+ .|+++|+..
T Consensus 11 ~PdsMdad~~er~~A~Eka~s~~Lq~~G~~~~lWR~~ 47 (98)
T COG4829 11 VPDSMDADAVERVRAREKARSRELQAQGKLLRLWRRP 47 (98)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHhcchHHHHHhcc
Confidence 45555555566677888888877665 599999853
No 80
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=21.43 E-value=21 Score=35.46 Aligned_cols=34 Identities=29% Similarity=0.365 Sum_probs=31.2
Q ss_pred CCCCcHHHHHHHHcCCChhhHHHHHhhhhhhhhh
Q 010478 114 MSLLPDDILINIISRLPLKEAAKTSVLSSRWKYL 147 (509)
Q Consensus 114 is~LPdeiL~~ILs~Lp~~d~~rts~lSrRWr~l 147 (509)
+..+|+++++.|++|+.-+++++.+.+|+|-..+
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~ 41 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKEL 41 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhh
Confidence 4579999999999999999999999999999864
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=20.50 E-value=62 Score=19.31 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=16.4
Q ss_pred cCCcEEEEeeEEEChhhHHHH
Q 010478 245 KYLRSLRLFSVNVTGEILEFI 265 (509)
Q Consensus 245 p~Lk~L~L~~v~~~~~~l~~l 265 (509)
++|+.|+|++-.+.++....+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 678999999988888765443
Done!