Query 010478
Match_columns 509
No_of_seqs 315 out of 1889
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 07:40:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010478.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010478hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 99.8 5.7E-19 2E-23 190.5 13.9 194 111-324 3-221 (594)
2 3ogk_B Coronatine-insensitive 99.8 2.1E-18 7E-23 186.1 13.5 37 114-150 13-50 (592)
3 2ast_B S-phase kinase-associat 99.7 1.7E-18 5.7E-23 173.4 0.9 163 112-324 7-178 (336)
4 1fs1_A SKP2 F-BOX, cyclin A/CD 98.7 9.2E-09 3.2E-13 73.0 4.2 37 111-147 6-42 (53)
5 2p1m_B Transport inhibitor res 98.7 7.6E-09 2.6E-13 111.0 4.9 104 242-345 102-220 (594)
6 3ogk_B Coronatine-insensitive 98.7 3E-08 1E-12 106.4 9.3 228 241-479 289-547 (592)
7 4fcg_A Uncharacterized protein 98.6 5E-08 1.7E-12 97.0 7.0 102 313-423 182-286 (328)
8 2ast_B S-phase kinase-associat 98.4 1.2E-08 4.3E-13 101.2 -2.9 168 243-417 116-299 (336)
9 2z80_A TOLL-like receptor 2, v 98.3 1.2E-06 4E-11 87.7 9.6 217 241-469 96-330 (353)
10 4fmz_A Internalin; leucine ric 98.3 2.2E-07 7.6E-12 92.6 3.2 214 241-481 106-322 (347)
11 4fcg_A Uncharacterized protein 98.3 4E-07 1.4E-11 90.4 4.0 220 176-423 75-310 (328)
12 2z66_A Variable lymphocyte rec 98.2 6.1E-07 2.1E-11 87.8 4.1 215 241-466 48-274 (306)
13 4fmz_A Internalin; leucine ric 98.2 6.5E-07 2.2E-11 89.2 3.5 212 241-481 84-298 (347)
14 2ca6_A RAN GTPase-activating p 98.1 2E-07 7E-12 94.6 -0.9 209 241-452 56-313 (386)
15 1z7x_W Ribonuclease inhibitor; 98.1 8.9E-08 3E-12 99.3 -3.8 257 210-480 27-323 (461)
16 2ra8_A Uncharacterized protein 98.1 9.8E-07 3.3E-11 88.8 2.7 61 242-304 136-204 (362)
17 2z80_A TOLL-like receptor 2, v 98.1 7.4E-06 2.5E-10 81.8 8.4 224 244-479 51-286 (353)
18 1o6v_A Internalin A; bacterial 98.1 2.4E-06 8.2E-11 89.0 4.9 208 241-478 173-383 (466)
19 1o6v_A Internalin A; bacterial 98.0 3.6E-06 1.2E-10 87.6 6.1 209 241-480 86-297 (466)
20 3v47_A TOLL-like receptor 5B a 98.0 2.5E-06 8.5E-11 88.2 4.6 95 360-466 320-421 (455)
21 1h6u_A Internalin H; cell adhe 98.0 1.6E-06 5.4E-11 85.3 3.0 167 241-424 59-227 (308)
22 2ca6_A RAN GTPase-activating p 98.0 3.9E-07 1.3E-11 92.4 -1.6 182 242-423 91-312 (386)
23 3zyi_A Leucine-rich repeat-con 98.0 1.2E-06 4.1E-11 90.9 1.3 8 212-219 100-107 (452)
24 3oja_A Leucine-rich immune mol 98.0 2.6E-06 8.8E-11 89.4 3.6 223 199-454 20-249 (487)
25 1h6u_A Internalin H; cell adhe 98.0 2.7E-06 9.3E-11 83.6 3.3 186 242-451 38-226 (308)
26 3o53_A Protein LRIM1, AGAP0063 98.0 2.5E-06 8.6E-11 84.1 2.9 212 241-478 54-270 (317)
27 3o6n_A APL1; leucine-rich repe 98.0 1E-05 3.4E-10 82.0 7.3 186 241-452 161-349 (390)
28 2z63_A TOLL-like receptor 4, v 98.0 1E-05 3.4E-10 86.1 7.6 210 241-468 321-547 (570)
29 3bz5_A Internalin-J, INLJ; leu 98.0 5.6E-06 1.9E-10 86.0 5.4 160 241-422 102-262 (457)
30 3vq2_A TLR4, TOLL-like recepto 97.9 1.2E-06 4.1E-11 94.2 0.1 24 442-465 545-570 (606)
31 3zyj_A Leucine-rich repeat-con 97.9 4E-06 1.4E-10 86.5 3.7 207 241-467 84-306 (440)
32 4ezg_A Putative uncharacterize 97.9 4.7E-06 1.6E-10 76.0 3.8 150 242-423 41-190 (197)
33 1ozn_A Reticulon 4 receptor; N 97.9 2.5E-06 8.5E-11 82.6 1.9 205 245-466 32-251 (285)
34 3bz5_A Internalin-J, INLJ; leu 97.9 3.9E-06 1.3E-10 87.3 3.3 183 241-452 60-243 (457)
35 1ozn_A Reticulon 4 receptor; N 97.9 2.1E-06 7.3E-11 83.0 1.2 174 241-424 52-235 (285)
36 2id5_A Lingo-1, leucine rich r 97.9 7.8E-06 2.7E-10 85.2 5.5 175 241-424 148-330 (477)
37 3zyj_A Leucine-rich repeat-con 97.9 1.8E-06 6.2E-11 89.2 0.5 103 241-345 108-216 (440)
38 3o53_A Protein LRIM1, AGAP0063 97.9 9.3E-06 3.2E-10 79.9 5.6 212 242-480 31-247 (317)
39 1z7x_W Ribonuclease inhibitor; 97.9 1.7E-06 5.7E-11 89.7 -0.1 164 315-480 86-266 (461)
40 3zyi_A Leucine-rich repeat-con 97.9 4.7E-06 1.6E-10 86.4 3.3 207 241-467 95-317 (452)
41 3oja_A Leucine-rich immune mol 97.8 7.2E-06 2.4E-10 86.0 4.0 188 242-451 31-223 (487)
42 2xwt_C Thyrotropin receptor; s 97.8 1.6E-05 5.6E-10 74.6 6.0 189 245-451 31-235 (239)
43 2z81_A CD282 antigen, TOLL-lik 97.8 3.2E-05 1.1E-09 81.9 8.5 180 241-424 70-261 (549)
44 1ogq_A PGIP-2, polygalacturona 97.8 8.1E-06 2.8E-10 80.3 3.3 40 241-281 97-136 (313)
45 3e4g_A ATP synthase subunit S, 97.8 1.1E-05 3.9E-10 71.9 3.8 41 244-285 60-100 (176)
46 2id5_A Lingo-1, leucine rich r 97.8 1.8E-05 6.1E-10 82.4 5.9 36 441-480 295-330 (477)
47 2z81_A CD282 antigen, TOLL-lik 97.8 2.7E-05 9.4E-10 82.4 7.1 223 245-479 26-260 (549)
48 3e4g_A ATP synthase subunit S, 97.8 9.9E-06 3.4E-10 72.3 3.0 67 241-307 81-153 (176)
49 2e31_A FBS1, F-box only protei 97.8 1E-05 3.5E-10 78.1 3.2 36 112-147 49-85 (297)
50 2z66_A Variable lymphocyte rec 97.8 1.3E-05 4.3E-10 78.3 3.8 218 243-480 26-258 (306)
51 3oja_B Anopheles plasmodium-re 97.7 1.7E-05 5.7E-10 85.3 4.8 184 242-451 168-354 (597)
52 3rgz_A Protein brassinosteroid 97.7 1E-06 3.6E-11 97.7 -4.9 217 242-479 148-377 (768)
53 3t6q_A CD180 antigen; protein- 97.7 1.9E-06 6.5E-11 92.6 -3.2 28 441-468 546-575 (606)
54 1wwl_A Monocyte differentiatio 97.7 5E-06 1.7E-10 81.7 -0.0 40 242-281 118-160 (312)
55 3l2o_B F-box only protein 4; s 97.7 9.2E-06 3.2E-10 77.6 1.5 33 114-146 5-37 (312)
56 3goz_A Leucine-rich repeat-con 97.7 7.2E-06 2.4E-10 82.4 0.6 140 336-476 138-287 (362)
57 2z7x_B TOLL-like receptor 1, v 97.7 0.00012 4.1E-09 76.9 10.1 151 241-394 216-407 (520)
58 3rfs_A Internalin B, repeat mo 97.7 7.2E-06 2.5E-10 78.9 0.3 36 242-280 60-95 (272)
59 3vq2_A TLR4, TOLL-like recepto 97.6 6.1E-06 2.1E-10 88.6 -0.5 97 243-345 305-408 (606)
60 3t6q_A CD180 antigen; protein- 97.6 7.5E-06 2.6E-10 87.9 0.1 222 240-481 320-558 (606)
61 3v47_A TOLL-like receptor 5B a 97.6 7.7E-06 2.7E-10 84.5 0.1 108 359-482 295-407 (455)
62 3j0a_A TOLL-like receptor 5; m 97.6 0.00012 4.2E-09 81.9 9.6 227 241-481 144-437 (844)
63 1h6t_A Internalin B; cell adhe 97.6 2E-05 6.7E-10 76.7 2.5 147 241-424 64-210 (291)
64 3goz_A Leucine-rich repeat-con 97.6 1.2E-05 4.1E-10 80.7 0.7 68 357-424 189-263 (362)
65 3o6n_A APL1; leucine-rich repe 97.6 2.8E-05 9.5E-10 78.7 3.2 143 243-393 43-193 (390)
66 1m9s_A Internalin B; cell inva 97.6 1.3E-05 4.5E-10 86.2 0.7 80 241-325 61-142 (605)
67 2xwt_C Thyrotropin receptor; s 97.6 3.8E-05 1.3E-09 72.1 3.7 169 241-422 51-234 (239)
68 3j0a_A TOLL-like receptor 5; m 97.5 0.00012 4E-09 82.0 8.2 208 240-467 333-574 (844)
69 3rgz_A Protein brassinosteroid 97.5 2.1E-05 7.1E-10 87.2 1.6 38 440-480 316-353 (768)
70 1p9a_G Platelet glycoprotein I 97.5 0.00012 4.3E-09 70.9 6.7 191 244-471 30-226 (290)
71 4glp_A Monocyte differentiatio 97.5 6E-06 2E-10 81.0 -3.1 109 184-304 66-180 (310)
72 1m9s_A Internalin B; cell inva 97.5 2.6E-05 8.8E-10 83.9 1.5 100 241-345 83-184 (605)
73 4eco_A Uncharacterized protein 97.5 6.7E-05 2.3E-09 81.2 4.8 174 241-424 269-467 (636)
74 1h6t_A Internalin B; cell adhe 97.5 4.1E-05 1.4E-09 74.4 2.7 125 241-397 86-211 (291)
75 4glp_A Monocyte differentiatio 97.4 9.4E-06 3.2E-10 79.6 -2.3 62 243-304 62-128 (310)
76 3oja_B Anopheles plasmodium-re 97.4 2E-05 6.9E-10 84.7 -0.2 208 241-479 143-354 (597)
77 1xku_A Decorin; proteoglycan, 97.4 3.6E-05 1.2E-09 76.0 1.6 101 241-345 72-180 (330)
78 2ell_A Acidic leucine-rich nuc 97.4 1.3E-05 4.5E-10 70.9 -1.4 61 243-304 22-82 (168)
79 2o6q_A Variable lymphocyte rec 97.4 2E-05 6.7E-10 75.6 -0.4 36 245-281 37-72 (270)
80 4ecn_A Leucine-rich repeat pro 97.4 0.00017 5.9E-09 80.6 6.9 173 241-424 511-707 (876)
81 3rfs_A Internalin B, repeat mo 97.4 2.8E-05 9.7E-10 74.6 0.3 169 242-423 38-214 (272)
82 1wwl_A Monocyte differentiatio 97.4 3.3E-05 1.1E-09 75.8 0.7 14 268-281 93-106 (312)
83 1ogq_A PGIP-2, polygalacturona 97.4 2.2E-05 7.6E-10 77.1 -0.8 172 241-423 72-253 (313)
84 3v7d_B Cell division control p 97.3 6E-05 2E-09 77.5 2.2 38 110-147 11-48 (464)
85 3g06_A SSPH2 (leucine-rich rep 97.3 0.00023 7.9E-09 76.6 6.7 88 360-465 218-307 (622)
86 2z63_A TOLL-like receptor 4, v 97.3 7.1E-05 2.4E-09 79.5 2.6 219 241-481 278-529 (570)
87 2z7x_B TOLL-like receptor 1, v 97.3 0.00055 1.9E-08 71.8 9.4 62 360-424 321-384 (520)
88 1ziw_A TOLL-like receptor 3; i 97.3 2.5E-05 8.5E-10 85.1 -1.8 37 441-480 583-619 (680)
89 2o6q_A Variable lymphocyte rec 97.2 6E-05 2E-09 72.2 0.8 62 241-304 57-120 (270)
90 2z62_A TOLL-like receptor 4, v 97.2 2.2E-05 7.5E-10 75.4 -2.4 123 245-372 28-158 (276)
91 3g06_A SSPH2 (leucine-rich rep 97.2 0.00039 1.3E-08 74.9 7.0 75 385-480 220-294 (622)
92 4ecn_A Leucine-rich repeat pro 97.2 5E-05 1.7E-09 84.9 -0.7 58 244-304 547-606 (876)
93 1xku_A Decorin; proteoglycan, 97.1 8E-05 2.7E-09 73.4 0.3 171 244-423 51-225 (330)
94 2ovr_B FBW7, F-BOX/WD repeat p 97.1 0.00031 1.1E-08 71.8 4.3 37 110-146 15-51 (445)
95 4eco_A Uncharacterized protein 97.1 8.6E-05 2.9E-09 80.4 -0.1 59 244-304 304-364 (636)
96 1p9a_G Platelet glycoprotein I 97.0 0.00011 3.7E-09 71.4 0.4 165 240-413 50-223 (290)
97 4ezg_A Putative uncharacterize 97.0 0.0011 3.7E-08 60.1 7.1 100 314-423 66-168 (197)
98 3un9_A NLR family member X1; l 97.0 4.6E-05 1.6E-09 76.8 -2.5 159 244-424 71-249 (372)
99 2z62_A TOLL-like receptor 4, v 97.0 0.0001 3.5E-09 70.6 -0.1 174 241-423 48-233 (276)
100 1p22_A F-BOX/WD-repeat protein 97.0 0.00017 5.9E-09 73.7 1.5 41 110-150 7-57 (435)
101 3a79_B TLR6, VLRB.59, TOLL-lik 97.0 0.00027 9.3E-09 75.1 2.8 150 242-394 246-436 (562)
102 1xeu_A Internalin C; cellular 96.9 0.00028 9.6E-09 67.4 2.3 79 242-325 38-117 (263)
103 2je0_A Acidic leucine-rich nuc 96.9 2.1E-05 7.3E-10 68.0 -5.4 61 243-304 15-75 (149)
104 2ft3_A Biglycan; proteoglycan, 96.9 9.3E-05 3.2E-09 73.1 -1.6 81 241-325 74-158 (332)
105 3a79_B TLR6, VLRB.59, TOLL-lik 96.9 0.00077 2.6E-08 71.6 5.3 81 241-325 72-157 (562)
106 1ziw_A TOLL-like receptor 3; i 96.8 0.00041 1.4E-08 75.4 2.3 176 242-423 402-593 (680)
107 1jl5_A Outer protein YOPM; leu 96.8 0.0013 4.3E-08 68.1 5.8 154 245-423 131-286 (454)
108 2ra8_A Uncharacterized protein 96.6 0.0025 8.6E-08 63.8 6.6 35 245-279 107-148 (362)
109 1jl5_A Outer protein YOPM; leu 96.6 0.0013 4.4E-08 68.1 4.4 11 413-423 356-366 (454)
110 1a9n_A U2A', U2A'; complex (nu 96.6 0.00026 8.9E-09 63.0 -0.8 60 242-304 16-75 (176)
111 2ft3_A Biglycan; proteoglycan, 96.6 0.00019 6.5E-09 70.8 -2.0 99 244-345 53-156 (332)
112 3m19_A Variable lymphocyte rec 96.6 0.00046 1.6E-08 65.2 0.6 145 245-396 35-189 (251)
113 4g8a_A TOLL-like receptor 4; l 96.5 0.00088 3E-08 71.7 2.7 124 333-470 466-597 (635)
114 3m19_A Variable lymphocyte rec 96.3 0.0059 2E-07 57.4 6.6 127 332-473 79-213 (251)
115 4ay9_X Follicle-stimulating ho 96.2 0.0018 6.3E-08 64.3 2.5 79 245-324 30-114 (350)
116 1xeu_A Internalin C; cellular 96.2 0.0012 4.1E-08 62.9 1.0 125 241-397 59-183 (263)
117 4g8a_A TOLL-like receptor 4; l 96.0 0.0048 1.6E-07 65.9 4.7 57 246-304 53-111 (635)
118 2ell_A Acidic leucine-rich nuc 95.9 0.0044 1.5E-07 54.2 3.7 130 269-424 23-157 (168)
119 2v70_A SLIT-2, SLIT homolog 2 95.9 0.0015 5.1E-08 60.4 0.2 144 245-412 32-180 (220)
120 1a9n_A U2A', U2A'; complex (nu 95.7 0.0036 1.2E-07 55.4 2.1 130 268-424 17-150 (176)
121 2o6s_A Variable lymphocyte rec 95.6 0.0019 6.4E-08 58.9 -0.2 128 243-395 26-157 (208)
122 3cvr_A Invasion plasmid antige 95.6 0.011 3.7E-07 62.9 5.5 73 244-325 79-151 (571)
123 3un9_A NLR family member X1; l 95.2 0.00033 1.1E-08 70.6 -7.4 40 357-396 205-249 (372)
124 4ay9_X Follicle-stimulating ho 95.2 0.045 1.5E-06 54.1 8.3 59 358-423 197-255 (350)
125 3e6j_A Variable lymphocyte rec 95.2 0.012 4E-07 54.6 3.6 125 332-472 60-192 (229)
126 1ds9_A Outer arm dynein; leuci 95.1 0.00045 1.5E-08 62.7 -6.3 35 243-280 46-80 (198)
127 1io0_A Tropomodulin; LRR prote 94.7 0.0049 1.7E-07 55.3 -0.3 64 360-423 90-160 (185)
128 3sb4_A Hypothetical leucine ri 94.6 0.025 8.6E-07 55.3 4.6 33 244-280 100-134 (329)
129 2v9t_B SLIT homolog 2 protein 94.5 0.023 8E-07 52.1 3.9 14 410-423 124-137 (220)
130 2v9t_B SLIT homolog 2 protein 94.4 0.054 1.8E-06 49.7 6.1 122 293-423 32-161 (220)
131 3cvr_A Invasion plasmid antige 94.4 0.0097 3.3E-07 63.2 1.0 140 244-397 99-241 (571)
132 2o6s_A Variable lymphocyte rec 94.2 0.02 6.7E-07 51.9 2.6 12 360-371 97-108 (208)
133 2v70_A SLIT-2, SLIT homolog 2 93.7 0.032 1.1E-06 51.2 3.0 12 360-371 102-113 (220)
134 3e6j_A Variable lymphocyte rec 93.7 0.025 8.5E-07 52.3 2.2 121 269-395 39-168 (229)
135 2je0_A Acidic leucine-rich nuc 93.4 0.029 9.8E-07 47.8 2.0 12 293-304 17-28 (149)
136 1dce_A Protein (RAB geranylger 93.1 0.0084 2.9E-07 63.8 -2.4 117 271-393 442-567 (567)
137 2xot_A Amphoterin-induced prot 92.9 0.023 7.7E-07 56.5 0.6 37 332-371 132-171 (361)
138 2xot_A Amphoterin-induced prot 92.8 0.042 1.4E-06 54.6 2.5 120 270-396 39-173 (361)
139 1w8a_A SLIT protein; signaling 92.5 0.036 1.2E-06 49.7 1.3 52 360-412 99-153 (192)
140 1ds9_A Outer arm dynein; leuci 92.3 0.0028 9.4E-08 57.4 -6.4 61 241-304 66-126 (198)
141 2o6r_A Variable lymphocyte rec 91.8 0.28 9.4E-06 42.8 6.3 101 359-471 48-155 (177)
142 1io0_A Tropomodulin; LRR prote 91.4 0.13 4.4E-06 45.7 3.8 127 352-480 25-161 (185)
143 2wfh_A SLIT homolog 2 protein 91.0 0.09 3.1E-06 47.1 2.2 53 359-412 98-153 (193)
144 2wfh_A SLIT homolog 2 protein 90.6 0.14 4.8E-06 45.8 3.2 96 360-467 51-153 (193)
145 2o6r_A Variable lymphocyte rec 89.9 0.18 6.1E-06 44.1 3.2 12 293-304 28-39 (177)
146 4b8c_D Glucose-repressible alc 87.1 0.076 2.6E-06 58.1 -1.6 39 241-281 220-258 (727)
147 1w8a_A SLIT protein; signaling 86.9 0.34 1.2E-05 43.1 2.9 27 442-468 126-154 (192)
148 3g39_A Variable lymphocyte rec 86.2 0.51 1.8E-05 41.0 3.7 81 332-416 50-134 (170)
149 3sb4_A Hypothetical leucine ri 86.2 0.51 1.7E-05 45.8 4.1 119 244-392 201-327 (329)
150 4fdw_A Leucine rich hypothetic 85.7 0.53 1.8E-05 47.4 4.0 11 411-421 320-330 (401)
151 4b8c_D Glucose-repressible alc 84.0 0.097 3.3E-06 57.3 -2.6 61 241-304 243-304 (727)
152 1dce_A Protein (RAB geranylger 83.5 0.55 1.9E-05 49.6 3.1 170 242-423 346-542 (567)
153 3g39_A Variable lymphocyte rec 83.4 1.5 5E-05 38.0 5.4 78 382-470 50-132 (170)
154 2r9u_A Variable lymphocyte rec 81.4 1.2 4.2E-05 38.7 4.1 96 314-413 33-134 (174)
155 4fs7_A Uncharacterized protein 79.7 0.68 2.3E-05 46.2 2.0 83 332-423 293-375 (394)
156 2r9u_A Variable lymphocyte rec 79.0 2.6 8.8E-05 36.6 5.4 14 410-423 77-90 (174)
157 4fdw_A Leucine rich hypothetic 79.0 0.86 3E-05 45.8 2.5 12 333-344 268-279 (401)
158 2ifg_A High affinity nerve gro 76.8 3.1 0.00011 40.3 5.8 14 410-423 76-89 (347)
159 4gt6_A Cell surface protein; l 67.7 3 0.0001 41.4 3.2 80 332-422 307-386 (394)
160 2ifg_A High affinity nerve gro 63.6 7.5 0.00026 37.5 5.2 51 358-411 75-129 (347)
161 4gt6_A Cell surface protein; l 62.2 3.9 0.00013 40.5 2.9 83 332-423 284-366 (394)
162 3rw6_A Nuclear RNA export fact 61.7 2.1 7.2E-05 40.4 0.7 61 358-420 191-257 (267)
163 4fs7_A Uncharacterized protein 56.8 4.2 0.00014 40.3 2.0 113 241-368 272-393 (394)
164 3rw6_A Nuclear RNA export fact 54.3 1.6 5.5E-05 41.1 -1.5 40 242-281 167-207 (267)
165 1pgv_A TMD-1, tropomodulin TMD 48.0 9.7 0.00033 33.9 2.7 126 352-480 30-167 (197)
166 4h09_A Hypothetical leucine ri 38.4 8.1 0.00028 37.8 0.6 59 332-393 282-340 (379)
167 4h09_A Hypothetical leucine ri 37.1 12 0.00042 36.4 1.8 80 331-421 258-340 (379)
168 1z0k_B FYVE-finger-containing 24.5 27 0.00092 25.2 1.2 23 36-58 19-41 (69)
169 1pgv_A TMD-1, tropomodulin TMD 21.9 36 0.0012 30.2 1.8 67 357-423 64-135 (197)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=5.7e-19 Score=190.48 Aligned_cols=194 Identities=18% Similarity=0.216 Sum_probs=115.4
Q ss_pred cccCCCCcHHHHHHHHcCCC-hhhHHHHHhhhhhhhhhcc-cCceeEEeCCCCCCCCCChHHHHHHHhccccCCccceEE
Q 010478 111 EDLMSLLPDDILINIISRLP-LKEAAKTSVLSSRWKYLWT-FTTVLDFDGITESSNCISDPTCIDKVLQLHRGSSINKFR 188 (509)
Q Consensus 111 ~D~is~LPdeiL~~ILs~Lp-~~d~~rts~lSrRWr~lw~-~~p~L~f~~~~~~~~~~~~~~~v~~~L~~~~~~~l~~l~ 188 (509)
.|+|+.||||||.+||+||+ .+|+++++.|||||+++.. ....+++..... ... ..++... +.++++.
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~----~~~----~~~~~~~--~~L~~L~ 72 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYA----VSP----ATVIRRF--PKVRSVE 72 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTS----SCH----HHHHHHC--TTCCEEE
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccc----cCH----HHHHhhC--CCceEEe
Confidence 48899999999999999999 9999999999999998722 122344433211 111 1222222 3488888
Q ss_pred EEeecC--------CCChhhHHHHHHHHhc--cCcEEEEEEecCCCcceeeecccccccccCCccCcCCcEEEEeeE-EE
Q 010478 189 LCLYSK--------DLHESEITNWVYSALS--KRVQIFELELWPRLKNYTFLENCYNNLKSELSGVKYLRSLRLFSV-NV 257 (509)
Q Consensus 189 l~~~~~--------~~~~~~~~~wl~~a~~--~~v~~L~L~~~~~~~~~~~p~~~~~~L~~~~~~~p~Lk~L~L~~v-~~ 257 (509)
+..... ..+...+..|+..... .++++|+|.... +... .+......+++|++|+|.++ .+
T Consensus 73 L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~------~~~~---~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 73 LKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV------VTDD---CLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp EECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB------CCHH---HHHHHHHHCTTCCEEEEESCEEE
T ss_pred ccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE------EcHH---HHHHHHHhCCCCcEEeCCCcCCC
Confidence 876421 1122445678877654 489999997432 1000 00001125789999999988 67
Q ss_pred ChhhHHHHHhCCccccceeeecccceeeE------EEecccccceEEEEeccc-C-----ccEEEEECCceeEEEEecC
Q 010478 258 TGEILEFILHNCPLLDQLSVVRSETLVSL------KVVGSAIQLKHLRISTCY-R-----LNEIKISTPNLLSFKYFGP 324 (509)
Q Consensus 258 ~~~~l~~lls~CP~Le~L~L~~c~~~~~l------~i~~~~~~Lk~L~l~~c~-~-----l~~l~i~aP~L~~L~~~g~ 324 (509)
++..+..++.+||+|++|+|.+|. ++.. .+...+++|+.|++.+|. . +..+...+|+|++|.+.++
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 777888888899999999999886 2211 122234677777777664 1 1111123466666666554
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.76 E-value=2.1e-18 Score=186.14 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=33.5
Q ss_pred CCCCcHHHHHHHHcCC-ChhhHHHHHhhhhhhhhhccc
Q 010478 114 MSLLPDDILINIISRL-PLKEAAKTSVLSSRWKYLWTF 150 (509)
Q Consensus 114 is~LPdeiL~~ILs~L-p~~d~~rts~lSrRWr~lw~~ 150 (509)
.++||||+|.+||+|| +.+|++++++|||||++++..
T Consensus 13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~ 50 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSE 50 (592)
T ss_dssp CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhc
Confidence 3489999999999999 899999999999999998543
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=1.7e-18 Score=173.38 Aligned_cols=163 Identities=23% Similarity=0.198 Sum_probs=101.3
Q ss_pred ccCCCCcHHHHHHHHcCCChhhHHHHHhhhhhhhhhccc---CceeEEeCCCCCCCCCChHHHHHHHhccccCCccceEE
Q 010478 112 DLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYLWTF---TTVLDFDGITESSNCISDPTCIDKVLQLHRGSSINKFR 188 (509)
Q Consensus 112 D~is~LPdeiL~~ILs~Lp~~d~~rts~lSrRWr~lw~~---~p~L~f~~~~~~~~~~~~~~~v~~~L~~~~~~~l~~l~ 188 (509)
..|++|||||+.+||++|+.+|+++++.|||+|+++... ...+++....+
T Consensus 7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~--------------------------- 59 (336)
T 2ast_B 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNL--------------------------- 59 (336)
T ss_dssp CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBC---------------------------
T ss_pred CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccC---------------------------
Confidence 458999999999999999999999999999999997421 11233332211
Q ss_pred EEeecCCCChhhHHHHHHHHhccCcEEEEEEecCCCcceeeecccccccccCCccCcCCcEEEEeeEEEChhhHHHHHhC
Q 010478 189 LCLYSKDLHESEITNWVYSALSKRVQIFELELWPRLKNYTFLENCYNNLKSELSGVKYLRSLRLFSVNVTGEILEFILHN 268 (509)
Q Consensus 189 l~~~~~~~~~~~~~~wl~~a~~~~v~~L~L~~~~~~~~~~~p~~~~~~L~~~~~~~p~Lk~L~L~~v~~~~~~l~~lls~ 268 (509)
. +..+......+++.+++....-. ...+ ....+++|+.|+|++..+++..+..++.+
T Consensus 60 --------~----~~~~~~~~~~~l~~L~l~~n~l~--~~~~---------~~~~~~~L~~L~L~~~~l~~~~~~~~~~~ 116 (336)
T 2ast_B 60 --------H----PDVTGRLLSQGVIAFRCPRSFMD--QPLA---------EHFSPFRVQHMDLSNSVIEVSTLHGILSQ 116 (336)
T ss_dssp --------C----HHHHHHHHHTTCSEEECTTCEEC--SCCC---------SCCCCBCCCEEECTTCEECHHHHHHHHTT
T ss_pred --------C----HHHHHhhhhccceEEEcCCcccc--ccch---------hhccCCCCCEEEccCCCcCHHHHHHHHhh
Confidence 0 11122222344555544211000 0000 23467899999999888888878888899
Q ss_pred Cccccceeeecccceee-EEEecccccceEEEEecccCccE--E---EEECCceeEEEEecC
Q 010478 269 CPLLDQLSVVRSETLVS-LKVVGSAIQLKHLRISTCYRLNE--I---KISTPNLLSFKYFGP 324 (509)
Q Consensus 269 CP~Le~L~L~~c~~~~~-l~i~~~~~~Lk~L~l~~c~~l~~--l---~i~aP~L~~L~~~g~ 324 (509)
||.|++|+|.+|..... ...-..+++|++|++.+|..+.. + .-..|+|++|.+.++
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 99999999998852211 11112357888888888753332 1 113456666666555
No 4
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.71 E-value=9.2e-09 Score=73.03 Aligned_cols=37 Identities=38% Similarity=0.489 Sum_probs=33.0
Q ss_pred cccCCCCcHHHHHHHHcCCChhhHHHHHhhhhhhhhh
Q 010478 111 EDLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYL 147 (509)
Q Consensus 111 ~D~is~LPdeiL~~ILs~Lp~~d~~rts~lSrRWr~l 147 (509)
.+.++.||+||+.+||++|+.+|+++++.|||+|+.+
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~ 42 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL 42 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHH
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3458999999999999999999999999999999975
No 5
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.69 E-value=7.6e-09 Score=111.05 Aligned_cols=104 Identities=19% Similarity=0.257 Sum_probs=75.3
Q ss_pred ccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeE---EEecccccceEEEEecccC-------ccEEEE
Q 010478 242 SGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSL---KVVGSAIQLKHLRISTCYR-------LNEIKI 311 (509)
Q Consensus 242 ~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l---~i~~~~~~Lk~L~l~~c~~-------l~~l~i 311 (509)
..+++|++|+|+++.+++..+..+..+||+|++|+|.+|..++.. .+...+++|++|++.+|.- +..+.-
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 468999999999999999988888878999999999999765431 2223568999999998861 222222
Q ss_pred ECCceeEEEEecCCc-----cceeeecCCCCceEEEEEe
Q 010478 312 STPNLLSFKYFGPGQ-----ELKLHIENAPQLVDISFRG 345 (509)
Q Consensus 312 ~aP~L~~L~~~g~~~-----~~~~~~~~~~~L~~l~i~~ 345 (509)
..|+|++|.+.++.. .......++++|+.+++..
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 567999999987641 0111223467788887764
No 6
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.69 E-value=3e-08 Score=106.37 Aligned_cols=228 Identities=18% Similarity=0.140 Sum_probs=146.3
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeE-EEecccccceEEEEec----------ccCccEE
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSL-KVVGSAIQLKHLRIST----------CYRLNEI 309 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l-~i~~~~~~Lk~L~l~~----------c~~l~~l 309 (509)
+..+++|+.|+|+++.+++..+..++.+||+|+.|+|.++.....+ .+...+++|++|++.+ |..+...
T Consensus 289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~ 368 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR 368 (592)
T ss_dssp GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH
T ss_pred HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH
Confidence 4568899999999988988888888999999999999865432221 2223468999999995 7654321
Q ss_pred -----EEECCceeEEEEecCCc--cceeeec-CCCCceEEEEEecc-chhh-----hhhhcccccCCCCccEEEEeechh
Q 010478 310 -----KISTPNLLSFKYFGPGQ--ELKLHIE-NAPQLVDISFRGVM-LTRV-----RNVVGPITSCFPQLKTLELDSCDE 375 (509)
Q Consensus 310 -----~i~aP~L~~L~~~g~~~--~~~~~~~-~~~~L~~l~i~~~~-~~~~-----~~~~~~l~~~l~~L~~L~L~~~~~ 375 (509)
.-.+|+|++|.+....- .....+. .+++|+++++.... ...+ +..+..++.++++|+.|.++.|..
T Consensus 369 ~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~ 448 (592)
T 3ogk_B 369 GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG 448 (592)
T ss_dssp HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGG
T ss_pred HHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCC
Confidence 22479999999854331 0111222 48899999996311 1111 122344566789999999975543
Q ss_pred -h-hhccC--CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCc--cccCCccEEEE
Q 010478 376 -L-YAQFS--EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPR--HSHQHLKLVEL 449 (509)
Q Consensus 376 -~-~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~--c~~~~Lk~V~i 449 (509)
+ ...+. ...+++|++|+|..+ .....++..+++.||+|+.|+|....-. + ..++. ....+|+.+.+
T Consensus 449 ~l~~~~~~~~~~~~~~L~~L~L~~n---~l~~~~~~~~~~~~~~L~~L~l~~n~l~----~-~~~~~~~~~l~~L~~L~l 520 (592)
T 3ogk_B 449 GLTDLGLSYIGQYSPNVRWMLLGYV---GESDEGLMEFSRGCPNLQKLEMRGCCFS----E-RAIAAAVTKLPSLRYLWV 520 (592)
T ss_dssp GCCHHHHHHHHHSCTTCCEEEECSC---CSSHHHHHHHHTCCTTCCEEEEESCCCB----H-HHHHHHHHHCSSCCEEEE
T ss_pred CccHHHHHHHHHhCccceEeeccCC---CCCHHHHHHHHhcCcccCeeeccCCCCc----H-HHHHHHHHhcCccCeeEC
Confidence 2 11122 345789999999533 3555678889999999999999874200 0 00111 13578999999
Q ss_pred ecccCCccHHHHHHHHHhcCccCCcEEEEe
Q 010478 450 HGFLGRPIDLELAFYILENAMTLEKMVVNR 479 (509)
Q Consensus 450 ~~f~g~~~e~~l~~~lL~na~~Le~m~I~~ 479 (509)
.+..-+... ++.+.+..|.|....|..
T Consensus 521 s~n~it~~~---~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 521 QGYRASMTG---QDLMQMARPYWNIELIPS 547 (592)
T ss_dssp ESCBCCTTC---TTGGGGCCTTEEEEEECC
T ss_pred cCCcCCHHH---HHHHHHhCCCcEEEEecC
Confidence 887644322 334555556665555543
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.59 E-value=5e-08 Score=97.02 Aligned_cols=102 Identities=24% Similarity=0.282 Sum_probs=55.3
Q ss_pred CCceeEEEEecCCc-cceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCccc
Q 010478 313 TPNLLSFKYFGPGQ-ELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLT 389 (509)
Q Consensus 313 aP~L~~L~~~g~~~-~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk 389 (509)
.++|+.|.+.+..- ..+-.+.++++|+.+++....... +..-+..+++|+.|.|+.+... ..+| +..+++|+
T Consensus 182 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~----l~~~l~~l~~L~~L~Ls~n~~~-~~~p~~~~~l~~L~ 256 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA----LGPAIHHLPKLEELDLRGCTAL-RNYPPIFGGRAPLK 256 (328)
T ss_dssp STTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC----CCGGGGGCTTCCEEECTTCTTC-CBCCCCTTCCCCCC
T ss_pred CCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc----CchhhccCCCCCEEECcCCcch-hhhHHHhcCCCCCC
Confidence 55666666655431 122235566777777776522111 1112356777888888754432 2233 56677888
Q ss_pred EEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478 390 HLHLRVATLNRESLLGLASIMKACPFLQTLIVQF 423 (509)
Q Consensus 390 ~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~ 423 (509)
+|+|..+.... .+..-+..+++|+.|++..
T Consensus 257 ~L~L~~n~~~~----~~p~~~~~l~~L~~L~L~~ 286 (328)
T 4fcg_A 257 RLILKDCSNLL----TLPLDIHRLTQLEKLDLRG 286 (328)
T ss_dssp EEECTTCTTCC----BCCTTGGGCTTCCEEECTT
T ss_pred EEECCCCCchh----hcchhhhcCCCCCEEeCCC
Confidence 88874432111 1222356778888887765
No 8
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.41 E-value=1.2e-08 Score=101.25 Aligned_cols=168 Identities=19% Similarity=0.277 Sum_probs=78.3
Q ss_pred cCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceee--E-EEecccccceEEEEecccCccE-----EEEECC
Q 010478 243 GVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVS--L-KVVGSAIQLKHLRISTCYRLNE-----IKISTP 314 (509)
Q Consensus 243 ~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~--l-~i~~~~~~Lk~L~l~~c~~l~~-----l~i~aP 314 (509)
.+++|++|+|+++.+++.... .++.|+.|++|+|.+|..++. + .+...+++|++|++.+|..+.. +.-..|
T Consensus 116 ~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 194 (336)
T 2ast_B 116 QCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS 194 (336)
T ss_dssp TBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred hCCCCCEEeCcCcccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence 344555555554444433322 233355555555555432221 0 1111234455555554422221 011244
Q ss_pred -ceeEEEEecCC-----ccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhh-hhccC-CCCCC
Q 010478 315 -NLLSFKYFGPG-----QELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDEL-YAQFS-EHELP 386 (509)
Q Consensus 315 -~L~~L~~~g~~-----~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~-~~~~~-~~~f~ 386 (509)
+|++|.+.++. ...+..+.++++|+.+++..... ..+... ..+..+++|++|.++.|..+ ...+. +..++
T Consensus 195 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~-l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~ 272 (336)
T 2ast_B 195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM-LKNDCF-QEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 272 (336)
T ss_dssp TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT-CCGGGG-GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT
T ss_pred cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc-CCHHHH-HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCC
Confidence 55555555442 00112234456666666654210 001112 22356688888888876544 22222 56688
Q ss_pred cccEEEEEeeccCccCHHHHHHHhhcCCCCc
Q 010478 387 NLTHLHLRVATLNRESLLGLASIMKACPFLQ 417 (509)
Q Consensus 387 ~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le 417 (509)
+|++|+|..+ ....++..+.+.+|.|+
T Consensus 273 ~L~~L~l~~~----i~~~~~~~l~~~l~~L~ 299 (336)
T 2ast_B 273 TLKTLQVFGI----VPDGTLQLLKEALPHLQ 299 (336)
T ss_dssp TCCEEECTTS----SCTTCHHHHHHHSTTSE
T ss_pred CCCEEeccCc----cCHHHHHHHHhhCcceE
Confidence 8888888544 33334555666677766
No 9
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.34 E-value=1.2e-06 Score=87.75 Aligned_cols=217 Identities=13% Similarity=0.112 Sum_probs=135.0
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEE---EecccccceEEEEecccCccEEEE----EC
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLK---VVGSAIQLKHLRISTCYRLNEIKI----ST 313 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~---i~~~~~~Lk~L~l~~c~~l~~l~i----~a 313 (509)
+..+++|++|+|++..+++- ....+.+++.|++|++.++.-. .+. .-..+++|+.|.+.++..+..+.. ..
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 173 (353)
T 2z80_A 96 FSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173 (353)
T ss_dssp TTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred cCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCC
Confidence 56788999999988777642 2234678899999999887422 211 123458899999998854555421 25
Q ss_pred CceeEEEEecCCcc--ceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhh---hccC-CCCCCc
Q 010478 314 PNLLSFKYFGPGQE--LKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELY---AQFS-EHELPN 387 (509)
Q Consensus 314 P~L~~L~~~g~~~~--~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~---~~~~-~~~f~~ 387 (509)
++|+.|.+.+..-. .+-.+.++++|+++++......... ..+...+++|+.|+++.+.--. ..++ ......
T Consensus 174 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~---~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~ 250 (353)
T 2z80_A 174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL---EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250 (353)
T ss_dssp CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH---HHHHHHTTTEEEEEEESCBCTTCCCC------CCCC
T ss_pred CCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccch---hhhhhhcccccEEECCCCccccccccccccccccch
Confidence 78888888876511 1234567788888888873321111 1233457899999998543111 1111 344667
Q ss_pred ccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCc---cccCCccEEEEec--ccCCccHHHHH
Q 010478 388 LTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPR---HSHQHLKLVELHG--FLGRPIDLELA 462 (509)
Q Consensus 388 Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~---c~~~~Lk~V~i~~--f~g~~~e~~l~ 462 (509)
++.+++....-.+.....+...+..+++|+.|++... .+..+|. ....+|+++.+.+ +.+....+.++
T Consensus 251 l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-------~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l 323 (353)
T 2z80_A 251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-------QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 323 (353)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-------CCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHH
T ss_pred hhccccccccccCcchhhhHHHHhcccCCCEEECCCC-------CCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHH
Confidence 8888886654444444456677889999999999763 2233442 2367899999987 44444446555
Q ss_pred HHHHhcC
Q 010478 463 FYILENA 469 (509)
Q Consensus 463 ~~lL~na 469 (509)
...+++.
T Consensus 324 ~~~~~~~ 330 (353)
T 2z80_A 324 SRWLNKN 330 (353)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 5555443
No 10
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.30 E-value=2.2e-07 Score=92.62 Aligned_cols=214 Identities=16% Similarity=0.164 Sum_probs=125.2
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE-E-ECCceeE
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK-I-STPNLLS 318 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~-i-~aP~L~~ 318 (509)
+..+++|+.|+|++..+.+-.- +..++.|+.|++.+|.....+..-..+++|+.|.+.+|.. ..+. + ..++|+.
T Consensus 106 ~~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~l~~L~~ 181 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV-KDVTPIANLTDLYS 181 (347)
T ss_dssp GTTCTTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCC-CCCGGGGGCTTCSE
T ss_pred HcCCCcCCEEECcCCcccCchh---hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCc-CCchhhccCCCCCE
Confidence 4567888888888776654321 6678888888888876544332233457788888877752 2111 1 3577888
Q ss_pred EEEecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeecc
Q 010478 319 FKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATL 398 (509)
Q Consensus 319 L~~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~ 398 (509)
|.+.++.-.....+..+++|+.+.+......... . +..+++|+.|.++.+. +....+...+++|++|++..+..
T Consensus 182 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~----~-~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l 255 (347)
T 4fmz_A 182 LSLNYNQIEDISPLASLTSLHYFTAYVNQITDIT----P-VANMTRLNSLKIGNNK-ITDLSPLANLSQLTWLEIGTNQI 255 (347)
T ss_dssp EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG----G-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCC
T ss_pred EEccCCcccccccccCCCccceeecccCCCCCCc----h-hhcCCcCCEEEccCCc-cCCCcchhcCCCCCEEECCCCcc
Confidence 8777665211112566777777777652211111 1 3567788888887443 21111156777888888854432
Q ss_pred CccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccC-ccccCCccEEEEecccCCccHHHHHHHHHhcCccCCcEEE
Q 010478 399 NRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVP-RHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVV 477 (509)
Q Consensus 399 ~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p-~c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m~I 477 (509)
... ..+..+|+|+.|++... .+..++ -....+|+.+.+.+..-..... ..+.+.+.|+.+.+
T Consensus 256 ~~~------~~~~~l~~L~~L~l~~n-------~l~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L 318 (347)
T 4fmz_A 256 SDI------NAVKDLTKLKMLNVGSN-------QISDISVLNNLSQLNSLFLNNNQLGNEDM----EVIGGLTNLTTLFL 318 (347)
T ss_dssp CCC------GGGTTCTTCCEEECCSS-------CCCCCGGGGGCTTCSEEECCSSCCCGGGH----HHHHTCTTCSEEEC
T ss_pred CCC------hhHhcCCCcCEEEccCC-------ccCCChhhcCCCCCCEEECcCCcCCCcCh----hHhhccccCCEEEc
Confidence 221 23667888888888653 111222 1235778888887754333222 23456788888887
Q ss_pred EecC
Q 010478 478 NRTN 481 (509)
Q Consensus 478 ~~~~ 481 (509)
....
T Consensus 319 ~~n~ 322 (347)
T 4fmz_A 319 SQNH 322 (347)
T ss_dssp CSSS
T ss_pred cCCc
Confidence 7543
No 11
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.26 E-value=4e-07 Score=90.41 Aligned_cols=220 Identities=20% Similarity=0.219 Sum_probs=139.4
Q ss_pred hccccCCccceEEEEeecCCCChhhHHHHHHHHhccCcEEEEEEecCCCcceeeecccccccccCCccCcCCcEEEEeeE
Q 010478 176 LQLHRGSSINKFRLCLYSKDLHESEITNWVYSALSKRVQIFELELWPRLKNYTFLENCYNNLKSELSGVKYLRSLRLFSV 255 (509)
Q Consensus 176 L~~~~~~~l~~l~l~~~~~~~~~~~~~~wl~~a~~~~v~~L~L~~~~~~~~~~~p~~~~~~L~~~~~~~p~Lk~L~L~~v 255 (509)
+.......+..+.+....-. .+...+. .-.+++.|+|....-. .+|. .+..+++|+.|+|++.
T Consensus 75 l~~~~~~~l~~L~L~~n~l~----~lp~~l~--~l~~L~~L~L~~n~l~---~lp~--------~~~~l~~L~~L~Ls~n 137 (328)
T 4fcg_A 75 LEDATQPGRVALELRSVPLP----QFPDQAF--RLSHLQHMTIDAAGLM---ELPD--------TMQQFAGLETLTLARN 137 (328)
T ss_dssp HHHHTSTTCCEEEEESSCCS----SCCSCGG--GGTTCSEEEEESSCCC---CCCS--------CGGGGTTCSEEEEESC
T ss_pred HhcccccceeEEEccCCCch----hcChhhh--hCCCCCEEECCCCCcc---chhH--------HHhccCCCCEEECCCC
Confidence 33333345888887653211 1111111 1347888888754311 2332 3568899999999988
Q ss_pred EEChhhHHHHHhCCccccceeeecccceeeEE--E--------ecccccceEEEEecccCccEEE---EECCceeEEEEe
Q 010478 256 NVTGEILEFILHNCPLLDQLSVVRSETLVSLK--V--------VGSAIQLKHLRISTCYRLNEIK---ISTPNLLSFKYF 322 (509)
Q Consensus 256 ~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~--i--------~~~~~~Lk~L~l~~c~~l~~l~---i~aP~L~~L~~~ 322 (509)
.+. .+..-+.+++.|+.|+|.+|...+.+. + -..+++|+.|.+.++. +..+. -..++|+.|.+.
T Consensus 138 ~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~ 214 (328)
T 4fcg_A 138 PLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIR 214 (328)
T ss_dssp CCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEE
T ss_pred ccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEcc
Confidence 776 333447789999999999987544221 1 0125899999999886 33321 136899999998
Q ss_pred cCCc-cceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeeccC
Q 010478 323 GPGQ-ELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATLN 399 (509)
Q Consensus 323 g~~~-~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~ 399 (509)
++.- ..+-.+..+++|+.+++..... ...+...+..+++|+.|.|+.+... ..+| +..+++|++|+|..+...
T Consensus 215 ~N~l~~l~~~l~~l~~L~~L~Ls~n~~---~~~~p~~~~~l~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 215 NSPLSALGPAIHHLPKLEELDLRGCTA---LRNYPPIFGGRAPLKRLILKDCSNL-LTLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp SSCCCCCCGGGGGCTTCCEEECTTCTT---CCBCCCCTTCCCCCCEEECTTCTTC-CBCCTTGGGCTTCCEEECTTCTTC
T ss_pred CCCCCcCchhhccCCCCCEEECcCCcc---hhhhHHHhcCCCCCCEEECCCCCch-hhcchhhhcCCCCCEEeCCCCCch
Confidence 8762 1223467889999999876211 1112234567899999999865533 3344 678899999999543221
Q ss_pred ccCHHHHHHHhhcCCCCcEEEEEE
Q 010478 400 RESLLGLASIMKACPFLQTLIVQF 423 (509)
Q Consensus 400 ~~~~~~l~~lL~~~P~Le~L~i~~ 423 (509)
+ .+..-+..+++|+.+.+..
T Consensus 291 --~--~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 291 --S--RLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp --C--CCCGGGGGSCTTCEEECCG
T ss_pred --h--hccHHHhhccCceEEeCCH
Confidence 1 2345577888888887753
No 12
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.21 E-value=6.1e-07 Score=87.83 Aligned_cols=215 Identities=16% Similarity=0.129 Sum_probs=127.1
Q ss_pred CccCcCCcEEEEeeEEEChhh-HHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE-----EECC
Q 010478 241 LSGVKYLRSLRLFSVNVTGEI-LEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK-----ISTP 314 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~-l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~-----i~aP 314 (509)
+..+++|+.|+|++..++... ....+.+++.|+.|+|+++........-..+++|+.|.+.++. +..+. -..+
T Consensus 48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~ 126 (306)
T 2z66_A 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLR 126 (306)
T ss_dssp TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCT
T ss_pred hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhcc
Confidence 467899999999887665321 1122346899999999988633221212346889999988764 22111 1357
Q ss_pred ceeEEEEecCCcc--ceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccE
Q 010478 315 NLLSFKYFGPGQE--LKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTH 390 (509)
Q Consensus 315 ~L~~L~~~g~~~~--~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~ 390 (509)
+|++|.+.+..-. .+..+.++++|+.+++...... +......+..+++|+.|+++.+. +....+ +..+++|++
T Consensus 127 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 203 (306)
T 2z66_A 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ--ENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQV 203 (306)
T ss_dssp TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG--GGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc--cccchhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCE
Confidence 8889988776511 1123566788998888752211 11233455678899999998432 322222 667889999
Q ss_pred EEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCccccCCccEEEEec--ccCCccHHHHHHHHH
Q 010478 391 LHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPRHSHQHLKLVELHG--FLGRPIDLELAFYIL 466 (509)
Q Consensus 391 L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~c~~~~Lk~V~i~~--f~g~~~e~~l~~~lL 466 (509)
|+|..+....... ..+..+++|+.|++....-... ....+ .....+|+.+.+.| +.+......|.+++-
T Consensus 204 L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~--~~~~~-~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~ 274 (306)
T 2z66_A 204 LNMSHNNFFSLDT----FPYKCLNSLQVLDYSLNHIMTS--KKQEL-QHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 274 (306)
T ss_dssp EECTTSCCSBCCS----GGGTTCTTCCEEECTTSCCCBC--SSSSC-CCCCTTCCEEECTTCCEECSGGGHHHHHHHH
T ss_pred EECCCCccCccCh----hhccCcccCCEeECCCCCCccc--CHHHH-HhhhccCCEEEccCCCeecccChHHHHHHHH
Confidence 9995543222211 1256789999998866310000 00000 11225899999977 555555556666653
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.18 E-value=6.5e-07 Score=89.21 Aligned_cols=212 Identities=14% Similarity=0.139 Sum_probs=132.6
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE--EECCceeE
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK--ISTPNLLS 318 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~--i~aP~L~~ 318 (509)
+..+++|++|+|++..+++-. -+.+++.|++|++.++.-.. +..-..+++|+.|.+.+|.....+. -..++|++
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~~---~~~~l~~L~~L~l~~n~i~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~ 159 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDIS---ALQNLTNLRELYLNEDNISD-ISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNY 159 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCG---GGTTCTTCSEEECTTSCCCC-CGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCE
T ss_pred hhcCCcCCEEEccCCcccCch---HHcCCCcCCEEECcCCcccC-chhhccCCceeEEECCCCCCcccccchhhCCCCcE
Confidence 457788999999887766521 26788999999998875322 1112345788999988886433322 13578888
Q ss_pred EEEecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeecc
Q 010478 319 FKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATL 398 (509)
Q Consensus 319 L~~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~ 398 (509)
|.+.++.-.....+..+++|+.+++......... . +..+++++.|.+..+. +....+...+++|++|++..+..
T Consensus 160 L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~n~l 233 (347)
T 4fmz_A 160 LTVTESKVKDVTPIANLTDLYSLSLNYNQIEDIS----P-LASLTSLHYFTAYVNQ-ITDITPVANMTRLNSLKIGNNKI 233 (347)
T ss_dssp EECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCG----G-GGGCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCC
T ss_pred EEecCCCcCCchhhccCCCCCEEEccCCcccccc----c-ccCCCccceeecccCC-CCCCchhhcCCcCCEEEccCCcc
Confidence 8888765212222667888888888763211111 1 4567888988887432 21111156778999999955432
Q ss_pred CccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccC-ccccCCccEEEEecccCCccHHHHHHHHHhcCccCCcEEE
Q 010478 399 NRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVP-RHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVV 477 (509)
Q Consensus 399 ~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p-~c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m~I 477 (509)
... .. +..+|+|+.|++.... ...++ -....+|+.+.+.+..-..- . .+...+.|+.+.+
T Consensus 234 ~~~-----~~-~~~l~~L~~L~l~~n~-------l~~~~~~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~L 294 (347)
T 4fmz_A 234 TDL-----SP-LANLSQLTWLEIGTNQ-------ISDINAVKDLTKLKMLNVGSNQISDI--S----VLNNLSQLNSLFL 294 (347)
T ss_dssp CCC-----GG-GTTCTTCCEEECCSSC-------CCCCGGGTTCTTCCEEECCSSCCCCC--G----GGGGCTTCSEEEC
T ss_pred CCC-----cc-hhcCCCCCEEECCCCc-------cCCChhHhcCCCcCEEEccCCccCCC--h----hhcCCCCCCEEEC
Confidence 221 11 7788999999887631 11122 12357899998877533221 1 3567899999988
Q ss_pred EecC
Q 010478 478 NRTN 481 (509)
Q Consensus 478 ~~~~ 481 (509)
....
T Consensus 295 ~~n~ 298 (347)
T 4fmz_A 295 NNNQ 298 (347)
T ss_dssp CSSC
T ss_pred cCCc
Confidence 7543
No 14
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.15 E-value=2e-07 Score=94.56 Aligned_cols=209 Identities=19% Similarity=0.177 Sum_probs=108.5
Q ss_pred CccCcCCcEEEEeeEEEC---h---h---hHHHHHhCCccccceeeeccccee----eE-EEecccccceEEEEecccCc
Q 010478 241 LSGVKYLRSLRLFSVNVT---G---E---ILEFILHNCPLLDQLSVVRSETLV----SL-KVVGSAIQLKHLRISTCYRL 306 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~---~---~---~l~~lls~CP~Le~L~L~~c~~~~----~l-~i~~~~~~Lk~L~l~~c~~l 306 (509)
+..+++|+.|+|+++.+. + . .+...+..++.|++|+|+++.--. .+ ..-..+++|++|.+.+|.-
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l- 134 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL- 134 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC-
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC-
Confidence 446788888888776432 1 1 234445678888888888775221 01 0112347888888887752
Q ss_pred cEE---EE-E----C---------CceeEEEEecCCcc---ce---eeecCCCCceEEEEEeccch--hhhhhhcccccC
Q 010478 307 NEI---KI-S----T---------PNLLSFKYFGPGQE---LK---LHIENAPQLVDISFRGVMLT--RVRNVVGPITSC 361 (509)
Q Consensus 307 ~~l---~i-~----a---------P~L~~L~~~g~~~~---~~---~~~~~~~~L~~l~i~~~~~~--~~~~~~~~l~~~ 361 (509)
... .+ . . |+|++|.+.++.-. .+ -.+..+++|+.+++...... .........+..
T Consensus 135 ~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~ 214 (386)
T 2ca6_A 135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY 214 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG
T ss_pred CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc
Confidence 110 00 0 1 78888887766510 11 12345667777777663211 111122224456
Q ss_pred CCCccEEEEeechhh---hhccC--CCCCCcccEEEEEeeccCccCHHHHHHHhhc--CCCCcEEEEEEeecCCccCCcc
Q 010478 362 FPQLKTLELDSCDEL---YAQFS--EHELPNLTHLHLRVATLNRESLLGLASIMKA--CPFLQTLIVQFDYNGYKVGRRR 434 (509)
Q Consensus 362 l~~L~~L~L~~~~~~---~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~--~P~Le~L~i~~~~~~~~~~~~~ 434 (509)
+++|+.|.|+.+.-- ...++ +..+++|++|+|..+.........+...++. +|+|+.|++....-.. ....
T Consensus 215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~--~g~~ 292 (386)
T 2ca6_A 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL--DAVR 292 (386)
T ss_dssp CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH--HHHH
T ss_pred CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH--HHHH
Confidence 777888877743310 12222 5566777887774433222222234445543 7778877776521000 0000
Q ss_pred ccCccc---cCCccEEEEecc
Q 010478 435 KVPRHS---HQHLKLVELHGF 452 (509)
Q Consensus 435 ~~p~c~---~~~Lk~V~i~~f 452 (509)
.++... +.+|+.+.+.+-
T Consensus 293 ~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 293 TLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp HHHHHHHHHCTTCCEEECTTS
T ss_pred HHHHHHHhcCCCceEEEccCC
Confidence 123222 467777777663
No 15
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.14 E-value=8.9e-08 Score=99.35 Aligned_cols=257 Identities=17% Similarity=0.109 Sum_probs=133.1
Q ss_pred ccCcEEEEEEecCCCc--ceeeecccccccccCCccCcCCcEEEEeeEEEChhhHHHHHhCCc----cccceeeecccce
Q 010478 210 SKRVQIFELELWPRLK--NYTFLENCYNNLKSELSGVKYLRSLRLFSVNVTGEILEFILHNCP----LLDQLSVVRSETL 283 (509)
Q Consensus 210 ~~~v~~L~L~~~~~~~--~~~~p~~~~~~L~~~~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP----~Le~L~L~~c~~~ 283 (509)
.++++.|++..+.-.. ...++ ..+..+++|++|+|++..+++..+..+...++ .|++|+|.+|.-.
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~--------~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 98 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDIS--------SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 98 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHH--------HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCB
T ss_pred cCCccEEEccCCCCCHHHHHHHH--------HHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCC
Confidence 3578888887543110 00111 02345688888888888887777777776666 6888888887522
Q ss_pred e----e-EEEecccccceEEEEecccCccEEE---------EECCceeEEEEecCCccc------eeeecCCCCceEEEE
Q 010478 284 V----S-LKVVGSAIQLKHLRISTCYRLNEIK---------ISTPNLLSFKYFGPGQEL------KLHIENAPQLVDISF 343 (509)
Q Consensus 284 ~----~-l~i~~~~~~Lk~L~l~~c~~l~~l~---------i~aP~L~~L~~~g~~~~~------~~~~~~~~~L~~l~i 343 (509)
. . ...-..+++|++|++.++. +.... -..++|++|.+.++.-.. .-.+..+++|+++++
T Consensus 99 ~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 177 (461)
T 1z7x_W 99 GAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177 (461)
T ss_dssp GGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEEC
Confidence 1 0 0111235788888888775 22110 013468888877664100 112344677777777
Q ss_pred Eeccch--hhhhhhcccccCCCCccEEEEeechhhhh---ccC--CCCCCcccEEEEEeeccCccCHHHHHH----Hhhc
Q 010478 344 RGVMLT--RVRNVVGPITSCFPQLKTLELDSCDELYA---QFS--EHELPNLTHLHLRVATLNRESLLGLAS----IMKA 412 (509)
Q Consensus 344 ~~~~~~--~~~~~~~~l~~~l~~L~~L~L~~~~~~~~---~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~----lL~~ 412 (509)
....-. ........+....++|++|.++.+.--.. .++ ...+++|++|++..+. ....++.. +...
T Consensus 178 ~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~---l~~~~~~~l~~~~~~~ 254 (461)
T 1z7x_W 178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK---LGDVGMAELCPGLLHP 254 (461)
T ss_dssp CSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB---CHHHHHHHHHHHHTST
T ss_pred cCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc---CChHHHHHHHHHHhcC
Confidence 662211 11111222223455778887774421110 112 3456778888774432 22222222 2335
Q ss_pred CCCCcEEEEEEeecCCccCCccccCcc--ccCCccEEEEecccCCccHH-HHHHHHHhcCccCCcEEEEec
Q 010478 413 CPFLQTLIVQFDYNGYKVGRRRKVPRH--SHQHLKLVELHGFLGRPIDL-ELAFYILENAMTLEKMVVNRT 480 (509)
Q Consensus 413 ~P~Le~L~i~~~~~~~~~~~~~~~p~c--~~~~Lk~V~i~~f~g~~~e~-~l~~~lL~na~~Le~m~I~~~ 480 (509)
+++|+.|++....-.. .....++.. ...+|+.+.+.+-.-..... .+...+..+.+.|+.+.+...
T Consensus 255 ~~~L~~L~L~~n~l~~--~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 255 SSRLRTLWIWECGITA--KGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp TCCCCEEECTTSCCCH--HHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred CCCceEEECcCCCCCH--HHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 7778877775521000 000001111 24678888887643222222 344444445578888887643
No 16
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.09 E-value=9.8e-07 Score=88.78 Aligned_cols=61 Identities=21% Similarity=0.161 Sum_probs=41.3
Q ss_pred ccCcCCcEEEEeeEEEC--------hhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEeccc
Q 010478 242 SGVKYLRSLRLFSVNVT--------GEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCY 304 (509)
Q Consensus 242 ~~~p~Lk~L~L~~v~~~--------~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~ 304 (509)
..|++|+.|.+..+.+. ..++..++..+|.||+|.|.++.++....+. .++|++|.+..|.
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~--~~~L~~L~L~~~~ 204 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP--RPNLKSLEIISGG 204 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB--CTTCSEEEEECSB
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc--CCCCcEEEEecCC
Confidence 35688888888665322 2357789999999999999988543321122 3677777777654
No 17
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.06 E-value=7.4e-06 Score=81.83 Aligned_cols=224 Identities=17% Similarity=0.164 Sum_probs=119.5
Q ss_pred CcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEE--ecccccceEEEEecccCccEEE---E-ECCcee
Q 010478 244 VKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKV--VGSAIQLKHLRISTCYRLNEIK---I-STPNLL 317 (509)
Q Consensus 244 ~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i--~~~~~~Lk~L~l~~c~~l~~l~---i-~aP~L~ 317 (509)
+++|+.|+|++..+++-. ...+.+++.|+.|++.++. ++.+.. -..+++|++|++.++. +..+. + ..++|+
T Consensus 51 ~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYIS-NSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLT 127 (353)
T ss_dssp CTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCS
T ss_pred cccCcEEECCCCcCcccC-HHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCC
Confidence 357777777766544311 1124567777777777763 222110 1234677777777664 33222 1 256778
Q ss_pred EEEEecCCc-cce--eeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEE
Q 010478 318 SFKYFGPGQ-ELK--LHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLH 392 (509)
Q Consensus 318 ~L~~~g~~~-~~~--~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~ 392 (509)
+|.+.+..- ..+ ..+.++++|+.+++.... .........+..+++|+.|.++.+. +....+ +..+++|++|+
T Consensus 128 ~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~--~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~ 204 (353)
T 2z80_A 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD--TFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKSLKSIQNVSHLI 204 (353)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS--SCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEE
T ss_pred EEECCCCCCcccCchhhhccCCCCcEEECCCCc--cccccCHHHccCCCCCCEEECCCCC-cCccCHHHHhccccCCeec
Confidence 887776541 122 246678888888887631 0111112334677889999998543 222223 66788999999
Q ss_pred EEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCC-ccCCccccCccccCCccEEEEecccCCccHHHHHHHHHhcCcc
Q 010478 393 LRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGY-KVGRRRKVPRHSHQHLKLVELHGFLGRPIDLELAFYILENAMT 471 (509)
Q Consensus 393 L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~-~~~~~~~~p~c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~ 471 (509)
+..+... .. -..++..+++|+.|++....-.. +...... .-....++.+.+.+..-....+.-+--.+.+.+.
T Consensus 205 l~~n~l~--~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~ 278 (353)
T 2z80_A 205 LHMKQHI--LL--LEIFVDVTSSVECLELRDTDLDTFHFSELST--GETNSLIKKFTFRNVKITDESLFQVMKLLNQISG 278 (353)
T ss_dssp EECSCST--TH--HHHHHHHTTTEEEEEEESCBCTTCCCC--------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTT
T ss_pred CCCCccc--cc--hhhhhhhcccccEEECCCCcccccccccccc--ccccchhhccccccccccCcchhhhHHHHhcccC
Confidence 9554321 11 23456678999999997642110 0000000 0123445555555544333333333334455666
Q ss_pred CCcEEEEe
Q 010478 472 LEKMVVNR 479 (509)
Q Consensus 472 Le~m~I~~ 479 (509)
|+.+.+..
T Consensus 279 L~~L~Ls~ 286 (353)
T 2z80_A 279 LLELEFSR 286 (353)
T ss_dssp CCEEECCS
T ss_pred CCEEECCC
Confidence 66666553
No 18
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.05 E-value=2.4e-06 Score=88.95 Aligned_cols=208 Identities=18% Similarity=0.181 Sum_probs=104.0
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE--EECCceeE
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK--ISTPNLLS 318 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~--i~aP~L~~ 318 (509)
+..+++|+.|++++..+.+-. .+..++.|+.|++.+|....... ...+++|+.|.+.+|. +..+. -..|+|+.
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~ 247 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDIS---VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQ-LKDIGTLASLTNLTD 247 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGGGGGCTTCSE
T ss_pred hccCCCCCEEECcCCcCCCCh---hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCC-cccchhhhcCCCCCE
Confidence 445666777777666554421 14566777777776664221111 1224667777776664 22211 12466777
Q ss_pred EEEecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeecc
Q 010478 319 FKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATL 398 (509)
Q Consensus 319 L~~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~ 398 (509)
|.+.++.-.....+..+++|+.+++......... . +..+++|+.|.++.+. +....+...+++|++|+|..+..
T Consensus 248 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~----~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L~~n~l 321 (466)
T 1o6v_A 248 LDLANNQISNLAPLSGLTKLTELKLGANQISNIS----P-LAGLTALTNLELNENQ-LEDISPISNLKNLTYLTLYFNNI 321 (466)
T ss_dssp EECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG----G-GTTCTTCSEEECCSSC-CSCCGGGGGCTTCSEEECCSSCC
T ss_pred EECCCCccccchhhhcCCCCCEEECCCCccCccc----c-ccCCCccCeEEcCCCc-ccCchhhcCCCCCCEEECcCCcC
Confidence 7776654111112556677777776652211111 1 3456777777776432 21111245667777777744322
Q ss_pred CccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccC-ccccCCccEEEEecccCCccHHHHHHHHHhcCccCCcEEE
Q 010478 399 NRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVP-RHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVV 477 (509)
Q Consensus 399 ~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p-~c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m~I 477 (509)
.... . +..+|+|+.|++.... +..++ -....+|+.+.+.+..-... .. +.+.+.|+.+.+
T Consensus 322 ~~~~-----~-~~~l~~L~~L~l~~n~-------l~~~~~l~~l~~L~~L~l~~n~l~~~-~~-----~~~l~~L~~L~l 382 (466)
T 1o6v_A 322 SDIS-----P-VSSLTKLQRLFFYNNK-------VSDVSSLANLTNINWLSAGHNQISDL-TP-----LANLTRITQLGL 382 (466)
T ss_dssp SCCG-----G-GGGCTTCCEEECCSSC-------CCCCGGGTTCTTCCEEECCSSCCCBC-GG-----GTTCTTCCEEEC
T ss_pred CCch-----h-hccCccCCEeECCCCc-------cCCchhhccCCCCCEEeCCCCccCcc-ch-----hhcCCCCCEEec
Confidence 2111 1 4567777777775421 11111 11345666666655332211 11 455666666655
Q ss_pred E
Q 010478 478 N 478 (509)
Q Consensus 478 ~ 478 (509)
.
T Consensus 383 ~ 383 (466)
T 1o6v_A 383 N 383 (466)
T ss_dssp C
T ss_pred c
Confidence 4
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.04 E-value=3.6e-06 Score=87.58 Aligned_cols=209 Identities=15% Similarity=0.169 Sum_probs=129.2
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE--EECCceeE
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK--ISTPNLLS 318 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~--i~aP~L~~ 318 (509)
+..+++|+.|+|.+..+.+..- +.+++.|++|++.+|.- +.+.--..+++|++|++.+|. +..+. -..++|+.
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~ 160 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQI-TDIDPLKNLTNLNRLELSSNT-ISDISALSGLTSLQQ 160 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCC-CCCGGGTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSE
T ss_pred hhccccCCEEECCCCccccChh---hcCCCCCCEEECCCCCC-CCChHHcCCCCCCEEECCCCc-cCCChhhccCCcccE
Confidence 4577889999998877765322 77889999999988752 221112345788889888775 22211 13577888
Q ss_pred EEEecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeecc
Q 010478 319 FKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATL 398 (509)
Q Consensus 319 L~~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~ 398 (509)
|.+.+..... ..+.++++|+.+++........ ..+..+++|++|.+..+. +....+...+++|++|++..+..
T Consensus 161 L~l~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l 233 (466)
T 1o6v_A 161 LSFGNQVTDL-KPLANLTTLERLDISSNKVSDI-----SVLAKLTNLESLIATNNQ-ISDITPLGILTNLDELSLNGNQL 233 (466)
T ss_dssp EEEEESCCCC-GGGTTCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSC-CCCCGGGGGCTTCCEEECCSSCC
T ss_pred eecCCcccCc-hhhccCCCCCEEECcCCcCCCC-----hhhccCCCCCEEEecCCc-ccccccccccCCCCEEECCCCCc
Confidence 8876544211 2367788888888876322111 124567889999987443 21222255678899999855432
Q ss_pred CccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCcccc-CccccCCccEEEEecccCCccHHHHHHHHHhcCccCCcEEE
Q 010478 399 NRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKV-PRHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVV 477 (509)
Q Consensus 399 ~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~-p~c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m~I 477 (509)
... ..+..+++|+.|++.... .... +-....+|+.+.+.+..-..-. . +...+.|+.+.+
T Consensus 234 ~~~------~~l~~l~~L~~L~l~~n~-------l~~~~~~~~l~~L~~L~l~~n~l~~~~-~-----~~~l~~L~~L~L 294 (466)
T 1o6v_A 234 KDI------GTLASLTNLTDLDLANNQ-------ISNLAPLSGLTKLTELKLGANQISNIS-P-----LAGLTALTNLEL 294 (466)
T ss_dssp CCC------GGGGGCTTCSEEECCSSC-------CCCCGGGTTCTTCSEEECCSSCCCCCG-G-----GTTCTTCSEEEC
T ss_pred ccc------hhhhcCCCCCEEECCCCc-------cccchhhhcCCCCCEEECCCCccCccc-c-----ccCCCccCeEEc
Confidence 221 236678999999887631 1111 1224578899888774322211 1 567789999888
Q ss_pred Eec
Q 010478 478 NRT 480 (509)
Q Consensus 478 ~~~ 480 (509)
...
T Consensus 295 ~~n 297 (466)
T 1o6v_A 295 NEN 297 (466)
T ss_dssp CSS
T ss_pred CCC
Confidence 754
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.04 E-value=2.5e-06 Score=88.25 Aligned_cols=95 Identities=19% Similarity=0.118 Sum_probs=43.8
Q ss_pred cCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccC
Q 010478 360 SCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVP 437 (509)
Q Consensus 360 ~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p 437 (509)
..+++|+.|.|+.+. +....+ +..+++|++|+|..+.-... ....+..+|+|+.|++... .+..+|
T Consensus 320 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N-------~l~~~~ 387 (455)
T 3v47_A 320 WGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSYNHIRAL----GDQSFLGLPNLKELALDTN-------QLKSVP 387 (455)
T ss_dssp TTCTTCCEEECCSSC-CCEECGGGGTTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSS-------CCSCCC
T ss_pred cCcccCCEEECCCCc-cCCcChhHhcCcccCCEEECCCCccccc----ChhhccccccccEEECCCC-------ccccCC
Confidence 345556666655321 111111 34455666666533221111 0122344566666665442 222232
Q ss_pred c---cccCCccEEEEec--ccCCccHHHHHHHHH
Q 010478 438 R---HSHQHLKLVELHG--FLGRPIDLELAFYIL 466 (509)
Q Consensus 438 ~---c~~~~Lk~V~i~~--f~g~~~e~~l~~~lL 466 (509)
. ....+|+.+.+.+ +.+....+.++...+
T Consensus 388 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l 421 (455)
T 3v47_A 388 DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 421 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHH
T ss_pred HhHhccCCcccEEEccCCCcccCCCcchHHHHHH
Confidence 2 2356788888876 445544455554333
No 21
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.04 E-value=1.6e-06 Score=85.25 Aligned_cols=167 Identities=16% Similarity=0.197 Sum_probs=100.8
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE-E-ECCceeE
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK-I-STPNLLS 318 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~-i-~aP~L~~ 318 (509)
+..+++|+.|+|++..+.+-.- +..++.|+.|++.++. ++.+.--..+++|+.|.+.++. +..+. + ..++|+.
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~ 133 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQV 133 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTSC-CCCCGGGTTCTTCCE
T ss_pred hhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECCCCC-CCCchhhcCCCCCCE
Confidence 4466778888887776654221 6677888888887765 2222112234677777777765 22221 1 2467778
Q ss_pred EEEecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeecc
Q 010478 319 FKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATL 398 (509)
Q Consensus 319 L~~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~ 398 (509)
|.+.+..-.....+..+++|+.+++......... . +..+++|+.|.++.+. +....+...+++|++|+|..+..
T Consensus 134 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~----~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT----P-LANLSKLTTLKADDNK-ISDISPLASLPNLIEVHLKNNQI 207 (308)
T ss_dssp EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG----G-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECTTSCC
T ss_pred EECCCCccCcCccccCCCCccEEEccCCcCCCCh----h-hcCCCCCCEEECCCCc-cCcChhhcCCCCCCEEEccCCcc
Confidence 8777665111112567788888888763221111 1 4678899999987432 21111256788899999855432
Q ss_pred CccCHHHHHHHhhcCCCCcEEEEEEe
Q 010478 399 NRESLLGLASIMKACPFLQTLIVQFD 424 (509)
Q Consensus 399 ~~~~~~~l~~lL~~~P~Le~L~i~~~ 424 (509)
.... . +..+|+|+.|++...
T Consensus 208 ~~~~-----~-l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 208 SDVS-----P-LANTSNLFIVTLTNQ 227 (308)
T ss_dssp CBCG-----G-GTTCTTCCEEEEEEE
T ss_pred Cccc-----c-ccCCCCCCEEEccCC
Confidence 2211 1 678999999999875
No 22
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.03 E-value=3.9e-07 Score=92.42 Aligned_cols=182 Identities=17% Similarity=0.138 Sum_probs=105.7
Q ss_pred ccCcCCcEEEEeeEEEChh---hHHHHHhCCccccceeeeccccee--eEEEec---cc---------ccceEEEEeccc
Q 010478 242 SGVKYLRSLRLFSVNVTGE---ILEFILHNCPLLDQLSVVRSETLV--SLKVVG---SA---------IQLKHLRISTCY 304 (509)
Q Consensus 242 ~~~p~Lk~L~L~~v~~~~~---~l~~lls~CP~Le~L~L~~c~~~~--~l~i~~---~~---------~~Lk~L~l~~c~ 304 (509)
..+++|+.|+|++..+++. .+...+..|+.|+.|+|.+|.--. ...+.. .+ ++|++|.+.+|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 4678888888888887765 355566778888888888875311 001111 11 688888888775
Q ss_pred Cc-cEEE------EECCceeEEEEecCCcc-------ceeeecCCCCceEEEEEeccchhh-hhhhcccccCCCCccEEE
Q 010478 305 RL-NEIK------ISTPNLLSFKYFGPGQE-------LKLHIENAPQLVDISFRGVMLTRV-RNVVGPITSCFPQLKTLE 369 (509)
Q Consensus 305 ~l-~~l~------i~aP~L~~L~~~g~~~~-------~~~~~~~~~~L~~l~i~~~~~~~~-~~~~~~l~~~l~~L~~L~ 369 (509)
-- ..+. -..++|++|.+.++.-. .+-.+..+++|+.+++........ ...+...+..+++|+.|.
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 21 1111 13578888888776511 011455778888888876322110 112233446778888888
Q ss_pred Eeechhhh---hccC--C--CCCCcccEEEEEeeccCccCHHHHHHHh-hcCCCCcEEEEEE
Q 010478 370 LDSCDELY---AQFS--E--HELPNLTHLHLRVATLNRESLLGLASIM-KACPFLQTLIVQF 423 (509)
Q Consensus 370 L~~~~~~~---~~~~--~--~~f~~Lk~L~L~~~~~~~~~~~~l~~lL-~~~P~Le~L~i~~ 423 (509)
|+.+.--. ..++ + ..+++|++|+|..+.....+...+...+ ..+|+|+.|++..
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 87443110 1112 2 3478888888854432222222355544 5578888888765
No 23
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.00 E-value=1.2e-06 Score=90.89 Aligned_cols=8 Identities=13% Similarity=0.588 Sum_probs=3.7
Q ss_pred CcEEEEEE
Q 010478 212 RVQIFELE 219 (509)
Q Consensus 212 ~v~~L~L~ 219 (509)
+++.|+|.
T Consensus 100 ~L~~L~Ls 107 (452)
T 3zyi_A 100 HLEVLQLG 107 (452)
T ss_dssp TCCEEECC
T ss_pred CCCEEECC
Confidence 44444443
No 24
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.99 E-value=2.6e-06 Score=89.39 Aligned_cols=223 Identities=13% Similarity=0.072 Sum_probs=137.5
Q ss_pred hhHHHHHHHHhc--cCcEEEEEEecCCCcceeeecccccccccCCccCcCCcEEEEeeEEEChhhHHHHHhCCcccccee
Q 010478 199 SEITNWVYSALS--KRVQIFELELWPRLKNYTFLENCYNNLKSELSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLS 276 (509)
Q Consensus 199 ~~~~~wl~~a~~--~~v~~L~L~~~~~~~~~~~p~~~~~~L~~~~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~ 276 (509)
..+...+..... .+++.|+|....-. .++.. .+..+++|+.|+|++..+++..- +.+++.|+.|+
T Consensus 20 ~~l~~~l~~l~~~~~~L~~L~Ls~n~l~---~~~~~-------~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~ 86 (487)
T 3oja_A 20 SSLKQALASLRQSAWNVKELDLSGNPLS---QISAA-------DLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLD 86 (487)
T ss_dssp TTHHHHHHTTSTTGGGCCEEECCSSCCC---CCCGG-------GGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEE
T ss_pred hhhHHHHHHhcccCCCccEEEeeCCcCC---CCCHH-------HHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEE
Confidence 444444443332 26788877643211 11111 35678999999998876653211 67899999999
Q ss_pred eecccceeeEEEecccccceEEEEecccCccEEEE-ECCceeEEEEecCC--ccceeeecCCCCceEEEEEeccchhhhh
Q 010478 277 VVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKI-STPNLLSFKYFGPG--QELKLHIENAPQLVDISFRGVMLTRVRN 353 (509)
Q Consensus 277 L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i-~aP~L~~L~~~g~~--~~~~~~~~~~~~L~~l~i~~~~~~~~~~ 353 (509)
|+++. ++.+. ..++|+.|.+.++. +..+.. ..|+|+.|.+.+.. +..+..+.++++|+.+++...... +.
T Consensus 87 Ls~N~-l~~l~---~~~~L~~L~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~ 159 (487)
T 3oja_A 87 LNNNY-VQELL---VGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID--TV 159 (487)
T ss_dssp CCSSE-EEEEE---ECTTCCEEECCSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC--EE
T ss_pred ecCCc-CCCCC---CCCCcCEEECcCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC--Cc
Confidence 99984 33332 23899999999887 444333 36889999998775 112345677889999888763211 11
Q ss_pred hhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCc
Q 010478 354 VVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRR 433 (509)
Q Consensus 354 ~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~ 433 (509)
....+...+++|+.|+|+.+. +....+...+++|++|+|..+.... +..-+..+++|+.|++... .+
T Consensus 160 ~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~l~~L~~L~Ls~N-------~l 226 (487)
T 3oja_A 160 NFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNKLAF-----MGPEFQSAAGVTWISLRNN-------KL 226 (487)
T ss_dssp EGGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSSCCCE-----ECGGGGGGTTCSEEECTTS-------CC
T ss_pred ChHHHhhhCCcccEEecCCCc-cccccccccCCCCCEEECCCCCCCC-----CCHhHcCCCCccEEEecCC-------cC
Confidence 122344568899999998443 2222224468899999995543222 2222567899999998763 22
Q ss_pred cccCcc--ccCCccEEEEecccC
Q 010478 434 RKVPRH--SHQHLKLVELHGFLG 454 (509)
Q Consensus 434 ~~~p~c--~~~~Lk~V~i~~f~g 454 (509)
..+|.. ...+|+.+.+.|-..
T Consensus 227 ~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 227 VLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CEECTTCCCCTTCCEEECTTCCB
T ss_pred cccchhhccCCCCCEEEcCCCCC
Confidence 233322 346788888776443
No 25
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.97 E-value=2.7e-06 Score=83.55 Aligned_cols=186 Identities=15% Similarity=0.146 Sum_probs=114.1
Q ss_pred ccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE-E-ECCceeEE
Q 010478 242 SGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK-I-STPNLLSF 319 (509)
Q Consensus 242 ~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~-i-~aP~L~~L 319 (509)
..+++|+.|++.+..+.+- . -+..++.|+.|++++|.-..... -..+++|+.|.+.++. +..+. + ..++|+.|
T Consensus 38 ~~l~~L~~L~l~~~~i~~l--~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L 112 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTI--E-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTL 112 (308)
T ss_dssp HHHHTCCEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEE
T ss_pred HHcCCcCEEEeeCCCccCc--h-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEE
Confidence 4678999999998876652 1 25779999999999985322111 3446899999999886 33332 1 25788888
Q ss_pred EEecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeeccC
Q 010478 320 KYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLN 399 (509)
Q Consensus 320 ~~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~~ 399 (509)
.++++.-...-.+..+++|+.+++......... . +..+++|+.|.++.+. +....+...+++|++|++..+...
T Consensus 113 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~----~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS----P-LAGLTNLQYLSIGNAQ-VSDLTPLANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCG----G-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCchhhcCCCCCCEEECCCCccCcCc----c-ccCCCCccEEEccCCc-CCCChhhcCCCCCCEEECCCCccC
Confidence 887765211113667788888888763221111 1 4567888888887442 211111567788888888544322
Q ss_pred ccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccC-ccccCCccEEEEec
Q 010478 400 RESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVP-RHSHQHLKLVELHG 451 (509)
Q Consensus 400 ~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p-~c~~~~Lk~V~i~~ 451 (509)
... . +..+++|+.|++... .+..++ -....+|+.+.+.+
T Consensus 187 ~~~-----~-l~~l~~L~~L~L~~N-------~l~~~~~l~~l~~L~~L~l~~ 226 (308)
T 1h6u_A 187 DIS-----P-LASLPNLIEVHLKNN-------QISDVSPLANTSNLFIVTLTN 226 (308)
T ss_dssp CCG-----G-GGGCTTCCEEECTTS-------CCCBCGGGTTCTTCCEEEEEE
T ss_pred cCh-----h-hcCCCCCCEEEccCC-------ccCccccccCCCCCCEEEccC
Confidence 211 1 677888888887653 111111 12346677777665
No 26
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.96 E-value=2.5e-06 Score=84.07 Aligned_cols=212 Identities=11% Similarity=0.059 Sum_probs=130.3
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEE-ECCceeEE
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKI-STPNLLSF 319 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i-~aP~L~~L 319 (509)
+..+++|+.|+|++..+.+.. . +..++.|+.|+++++. ++.+. ..++|+.|.+.++. +..+.. ..++|+.|
T Consensus 54 ~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~-l~~l~---~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L 125 (317)
T 3o53_A 54 LAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQELL---VGPSIETLHAANNN-ISRVSCSRGQGKKNI 125 (317)
T ss_dssp HTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSE-EEEEE---ECTTCCEEECCSSC-CSEEEECCCSSCEEE
T ss_pred hhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCc-ccccc---CCCCcCEEECCCCc-cCCcCccccCCCCEE
Confidence 457788999999876654321 1 6778999999998875 33322 23789999988876 444443 36889999
Q ss_pred EEecCCc--cceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeec
Q 010478 320 KYFGPGQ--ELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVAT 397 (509)
Q Consensus 320 ~~~g~~~--~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~ 397 (509)
.+.+..- ..+..+..+++|+.+++....-. ......+...+++|+.|.++.+. +........+++|++|+|..+.
T Consensus 126 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~l~~L~~L~Ls~N~ 202 (317)
T 3o53_A 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEID--TVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNK 202 (317)
T ss_dssp ECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC--EEEGGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSSC
T ss_pred ECCCCCCCCccchhhhccCCCCEEECCCCCCC--cccHHHHhhccCcCCEEECCCCc-CcccccccccccCCEEECCCCc
Confidence 8887651 12335566788888888762211 11122344567899999998433 2111114458899999995543
Q ss_pred cCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCc--cccCCccEEEEecccCCccHHHHHHHHHhcCccCCcE
Q 010478 398 LNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPR--HSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKM 475 (509)
Q Consensus 398 ~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~--c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m 475 (509)
-.. +..-+..+++|+.|++... .+..+|. ....+|+.+.+.+-.-.. ..+...+...+.|+.+
T Consensus 203 l~~-----l~~~~~~l~~L~~L~L~~N-------~l~~l~~~~~~l~~L~~L~l~~N~~~~---~~~~~~~~~~~~L~~l 267 (317)
T 3o53_A 203 LAF-----MGPEFQSAAGVTWISLRNN-------KLVLIEKALRFSQNLEHFDLRGNGFHC---GTLRDFFSKNQRVQTV 267 (317)
T ss_dssp CCE-----ECGGGGGGTTCSEEECTTS-------CCCEECTTCCCCTTCCEEECTTCCCBH---HHHHHHHHTCHHHHHH
T ss_pred CCc-----chhhhcccCcccEEECcCC-------cccchhhHhhcCCCCCEEEccCCCccC---cCHHHHHhccccceEE
Confidence 222 2222667899999998663 2222332 134678888887643321 1233445566667766
Q ss_pred EEE
Q 010478 476 VVN 478 (509)
Q Consensus 476 ~I~ 478 (509)
.+.
T Consensus 268 ~l~ 270 (317)
T 3o53_A 268 AKQ 270 (317)
T ss_dssp HHH
T ss_pred ECC
Confidence 655
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.96 E-value=1e-05 Score=82.01 Aligned_cols=186 Identities=19% Similarity=0.179 Sum_probs=103.0
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEE-CCceeEE
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKIS-TPNLLSF 319 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~-aP~L~~L 319 (509)
+..+++|+.|+|++..+++.. +..++.|+.|++.++. ++.+.. ..+|+.|++.++. +..+... .++|+.|
T Consensus 161 ~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~n~-l~~~~~---~~~L~~L~l~~n~-l~~~~~~~~~~L~~L 231 (390)
T 3o6n_A 161 FQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNL-LSTLAI---PIAVEELDASHNS-INVVRGPVNVELTIL 231 (390)
T ss_dssp TSSCTTCCEEECCSSCCSBCC----GGGCTTCSEEECCSSC-CSEEEC---CSSCSEEECCSSC-CCEEECCCCSSCCEE
T ss_pred ccCCCCCCEEECCCCcCCccc----cccccccceeeccccc-ccccCC---CCcceEEECCCCe-eeeccccccccccEE
Confidence 344556666666555544332 2345566666665543 222221 1467777776665 3333222 4577788
Q ss_pred EEecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeec
Q 010478 320 KYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVAT 397 (509)
Q Consensus 320 ~~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~ 397 (509)
.+.+..-...-.+..+++|+++++....- .......+..+++|+.|.++.+. +. .++ ...+++|++|+|..+.
T Consensus 232 ~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~L~~n~-l~-~~~~~~~~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 232 KLQHNNLTDTAWLLNYPGLVEVDLSYNEL---EKIMYHPFVKMQRLERLYISNNR-LV-ALNLYGQPIPTLKVLDLSHNH 306 (390)
T ss_dssp ECCSSCCCCCGGGGGCTTCSEEECCSSCC---CEEESGGGTTCSSCCEEECCSSC-CC-EEECSSSCCTTCCEEECCSSC
T ss_pred ECCCCCCcccHHHcCCCCccEEECCCCcC---CCcChhHccccccCCEEECCCCc-Cc-ccCcccCCCCCCCEEECCCCc
Confidence 77766521223456678888888776221 11112334567888888887432 21 122 4567888888885543
Q ss_pred cCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCccccCCccEEEEecc
Q 010478 398 LNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPRHSHQHLKLVELHGF 452 (509)
Q Consensus 398 ~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~c~~~~Lk~V~i~~f 452 (509)
-.. +..-+..+++|+.|++... .+..++.....+|+.+.+.|-
T Consensus 307 l~~-----~~~~~~~l~~L~~L~L~~N-------~i~~~~~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 307 LLH-----VERNQPQFDRLENLYLDHN-------SIVTLKLSTHHTLKNLTLSHN 349 (390)
T ss_dssp CCC-----CGGGHHHHTTCSEEECCSS-------CCCCCCCCTTCCCSEEECCSS
T ss_pred cee-----cCccccccCcCCEEECCCC-------ccceeCchhhccCCEEEcCCC
Confidence 221 2222456788888888762 222333335678888888763
No 28
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.95 E-value=1e-05 Score=86.09 Aligned_cols=210 Identities=17% Similarity=0.123 Sum_probs=133.0
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEe---cccccceEEEEecccCccEEE--E-ECC
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVV---GSAIQLKHLRISTCYRLNEIK--I-STP 314 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~---~~~~~Lk~L~l~~c~~l~~l~--i-~aP 314 (509)
...+++|+.|++.+..+....-. ..+|.|++|++.++.......+. ..+++|+.|++.+|. +..+. + ..+
T Consensus 321 ~~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~ 396 (570)
T 2z63_A 321 TLKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLE 396 (570)
T ss_dssp BCBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCT
T ss_pred cccccccCEEeCcCCcccccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-cccccccccccC
Confidence 45789999999988765432111 57999999999988633221111 245889999999886 33332 2 478
Q ss_pred ceeEEEEecCCcc---ceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCccc
Q 010478 315 NLLSFKYFGPGQE---LKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLT 389 (509)
Q Consensus 315 ~L~~L~~~g~~~~---~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk 389 (509)
+|++|.+.+..-. ....+.++++|+.+++..... .......+..+++|+.|.+..+.-....+| +..+++|+
T Consensus 397 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~ 473 (570)
T 2z63_A 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT---RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473 (570)
T ss_dssp TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCC---EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcc---cccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCC
Confidence 9999988876410 112456788999998876221 111223456789999999985542223344 77889999
Q ss_pred EEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccC-c--cccCCccEEEEec--ccCCccHHHHH-H
Q 010478 390 HLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVP-R--HSHQHLKLVELHG--FLGRPIDLELA-F 463 (509)
Q Consensus 390 ~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p-~--c~~~~Lk~V~i~~--f~g~~~e~~l~-~ 463 (509)
+|+|..+.-... ....+..+|+|+.|++... .+..++ . ....+|+.+.+.+ +.+......++ .
T Consensus 474 ~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n-------~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~ 542 (570)
T 2z63_A 474 FLDLSQCQLEQL----SPTAFNSLSSLQVLNMASN-------QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 542 (570)
T ss_dssp EEECTTSCCCEE----CTTTTTTCTTCCEEECCSS-------CCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHH
T ss_pred EEECCCCccccC----ChhhhhcccCCCEEeCCCC-------cCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHH
Confidence 999954322211 1334667899999999763 112222 1 1357899999987 55655566666 5
Q ss_pred HHHhc
Q 010478 464 YILEN 468 (509)
Q Consensus 464 ~lL~n 468 (509)
++-++
T Consensus 543 wl~~~ 547 (570)
T 2z63_A 543 WLNKN 547 (570)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 55443
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.95 E-value=5.6e-06 Score=86.04 Aligned_cols=160 Identities=18% Similarity=0.177 Sum_probs=77.4
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEE-CCceeEE
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKIS-TPNLLSF 319 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~-aP~L~~L 319 (509)
+..+++|+.|+|++..+++-. +..++.|++|.+.++.- +.+.+ ..+++|+.|.+.++..+..+.+. .++|+.|
T Consensus 102 ~~~l~~L~~L~L~~N~l~~l~----~~~l~~L~~L~l~~N~l-~~l~l-~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L 175 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTKLD----VSQNPLLTYLNCARNTL-TEIDV-SHNTQLTELDCHLNKKITKLDVTPQTQLTTL 175 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCCC----CTTCTTCCEEECTTSCC-SCCCC-TTCTTCCEEECTTCSCCCCCCCTTCTTCCEE
T ss_pred cCCCCcCCEEECCCCcCCeec----CCCCCcCCEEECCCCcc-ceecc-ccCCcCCEEECCCCCcccccccccCCcCCEE
Confidence 345566666666655554421 45566666666665532 22222 22456666666665433333322 4566666
Q ss_pred EEecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeeccC
Q 010478 320 KYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLN 399 (509)
Q Consensus 320 ~~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~~ 399 (509)
.+++..- ..+.+..+++|+.+++....-... . +..+++|+.|.++.+. + ..+|...+++|++|++..+.-.
T Consensus 176 ~ls~n~l-~~l~l~~l~~L~~L~l~~N~l~~~-----~-l~~l~~L~~L~Ls~N~-l-~~ip~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 176 DCSFNKI-TELDVSQNKLLNRLNCDTNNITKL-----D-LNQNIQLTFLDCSSNK-L-TEIDVTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp ECCSSCC-CCCCCTTCTTCCEEECCSSCCSCC-----C-CTTCTTCSEEECCSSC-C-SCCCCTTCTTCSEEECCSSCCS
T ss_pred ECCCCcc-ceeccccCCCCCEEECcCCcCCee-----c-cccCCCCCEEECcCCc-c-cccCccccCCCCEEEeeCCcCC
Confidence 6655441 112245556666666554211111 1 2455666666665322 2 1133455666666666443222
Q ss_pred ccCHHHHHHHhhcCCCCcEEEEE
Q 010478 400 RESLLGLASIMKACPFLQTLIVQ 422 (509)
Q Consensus 400 ~~~~~~l~~lL~~~P~Le~L~i~ 422 (509)
... +..+++|+.|.+.
T Consensus 247 ~~~-------~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 247 ELD-------VSTLSKLTTLHCI 262 (457)
T ss_dssp CCC-------CTTCTTCCEEECT
T ss_pred CcC-------HHHCCCCCEEecc
Confidence 111 3456666666543
No 30
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.94 E-value=1.2e-06 Score=94.23 Aligned_cols=24 Identities=8% Similarity=0.087 Sum_probs=13.5
Q ss_pred CCccEEEEec--ccCCccHHHHHHHH
Q 010478 442 QHLKLVELHG--FLGRPIDLELAFYI 465 (509)
Q Consensus 442 ~~Lk~V~i~~--f~g~~~e~~l~~~l 465 (509)
++|+.+.+.| +.+......|+.++
T Consensus 545 ~~L~~l~l~~N~~~c~c~~~~~~~~l 570 (606)
T 3vq2_A 545 KSLAFFNLTNNSVACICEHQKFLQWV 570 (606)
T ss_dssp TTCCEEECCSCCCCCSSTTHHHHTTT
T ss_pred ccCcEEEccCCCcccCCccHHHHHHH
Confidence 3688888877 33433434444443
No 31
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.93 E-value=4e-06 Score=86.55 Aligned_cols=207 Identities=15% Similarity=0.136 Sum_probs=109.0
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEE--EecccccceEEEEecccCccEEEE----ECC
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLK--VVGSAIQLKHLRISTCYRLNEIKI----STP 314 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~--i~~~~~~Lk~L~l~~c~~l~~l~i----~aP 314 (509)
+..+++|+.|+|++..+.+-.. ..+.+++.|++|+|.++. ++.+. .-..+++|+.|++.++. +..+.- ..|
T Consensus 84 ~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~ 160 (440)
T 3zyj_A 84 FKHLRHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIP 160 (440)
T ss_dssp TSSCSSCCEEECCSSCCCEECG-GGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCT
T ss_pred hhCCCCCCEEECCCCcCCccCh-hhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCc
Confidence 5567777777777665443211 224567778888777763 22111 01234677777777665 333321 246
Q ss_pred ceeEEEEecCCccce---eeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCccc
Q 010478 315 NLLSFKYFGPGQELK---LHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLT 389 (509)
Q Consensus 315 ~L~~L~~~g~~~~~~---~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk 389 (509)
+|+.|.+.+...-.. -.+.++++|+.+++.......+ . -+..+++|+.|+|+.+ .+....+ +..+++|+
T Consensus 161 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~----~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 234 (440)
T 3zyj_A 161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI----P-NLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQ 234 (440)
T ss_dssp TCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC----C-CCTTCSSCCEEECTTS-CCCEECTTTTTTCTTCC
T ss_pred ccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc----c-ccCCCcccCEEECCCC-ccCccChhhhccCccCC
Confidence 777777765321011 1245567777777665221111 1 1345677888887743 2222222 56677888
Q ss_pred EEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCc---cccCCccEEEEec--ccCCccHHHHHHH
Q 010478 390 HLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPR---HSHQHLKLVELHG--FLGRPIDLELAFY 464 (509)
Q Consensus 390 ~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~---c~~~~Lk~V~i~~--f~g~~~e~~l~~~ 464 (509)
+|+|..+.-.... ...+..+++|+.|++... .+..++. ....+|+.+.+.+ |........+..+
T Consensus 235 ~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N-------~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~ 303 (440)
T 3zyj_A 235 KLWMIQSQIQVIE----RNAFDNLQSLVEINLAHN-------NLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWW 303 (440)
T ss_dssp EEECTTCCCCEEC----TTSSTTCTTCCEEECTTS-------CCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHHHH
T ss_pred EEECCCCceeEEC----hhhhcCCCCCCEEECCCC-------CCCccChhHhccccCCCEEEcCCCCccCCCCchHHHHH
Confidence 8887443222111 223556788888877652 2222221 1346788888876 3343333344444
Q ss_pred HHh
Q 010478 465 ILE 467 (509)
Q Consensus 465 lL~ 467 (509)
+-+
T Consensus 304 ~~~ 306 (440)
T 3zyj_A 304 IKD 306 (440)
T ss_dssp HHT
T ss_pred HHh
Confidence 433
No 32
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.93 E-value=4.7e-06 Score=76.04 Aligned_cols=150 Identities=13% Similarity=0.179 Sum_probs=72.0
Q ss_pred ccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEECCceeEEEE
Q 010478 242 SGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKY 321 (509)
Q Consensus 242 ~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~~ 321 (509)
..+++|+.|++++..+.+-. -+..+++|++|.+.+|. +..+..-..+++|+.|.+.++. +..
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l~~n~-l~~------------- 102 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT---GIEYAHNIKDLTINNIH-ATNYNPISGLSNLERLRIMGKD-VTS------------- 102 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT---TGGGCTTCSEEEEESCC-CSCCGGGTTCTTCCEEEEECTT-CBG-------------
T ss_pred hhcCCccEEeccCCCccChH---HHhcCCCCCEEEccCCC-CCcchhhhcCCCCCEEEeECCc-cCc-------------
Confidence 34677777777776665311 25667778888777772 2222111123445555554443 100
Q ss_pred ecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeeccCcc
Q 010478 322 FGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNRE 401 (509)
Q Consensus 322 ~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~~~~ 401 (509)
...-.+..+++|+.+++....... .....+..+++|+.|.++.+..+...-+...+++|++|++..+.-..
T Consensus 103 -----~~~~~l~~l~~L~~L~Ls~n~i~~---~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~- 173 (197)
T 4ezg_A 103 -----DKIPNLSGLTSLTLLDISHSAHDD---SILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD- 173 (197)
T ss_dssp -----GGSCCCTTCTTCCEEECCSSBCBG---GGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC-
T ss_pred -----ccChhhcCCCCCCEEEecCCccCc---HhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC-
Confidence 011123444555555554411110 01122245667777777654322111115556677777763332111
Q ss_pred CHHHHHHHhhcCCCCcEEEEEE
Q 010478 402 SLLGLASIMKACPFLQTLIVQF 423 (509)
Q Consensus 402 ~~~~l~~lL~~~P~Le~L~i~~ 423 (509)
+. .+..+|+|+.|++..
T Consensus 174 ----~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 174 ----YR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp ----CT-TGGGCSSCCEEEECB
T ss_pred ----hH-HhccCCCCCEEEeeC
Confidence 11 355667777776654
No 33
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.92 E-value=2.5e-06 Score=82.58 Aligned_cols=205 Identities=13% Similarity=0.080 Sum_probs=97.7
Q ss_pred cCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEE--EecccccceEEEEecccCccEEEE----ECCceeE
Q 010478 245 KYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLK--VVGSAIQLKHLRISTCYRLNEIKI----STPNLLS 318 (509)
Q Consensus 245 p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~--i~~~~~~Lk~L~l~~c~~l~~l~i----~aP~L~~ 318 (509)
++|+.|+|++..+++-. ...+..++.|++|+|.++. ++.+. .-..+++|+.|++.++..+..+.. ..++|++
T Consensus 32 ~~l~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp TTCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCceEEEeeCCcCCccC-HHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 45666666554443211 0123455666666665553 11110 011235566666655542222211 2356666
Q ss_pred EEEecCCcc--ceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEE
Q 010478 319 FKYFGPGQE--LKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLR 394 (509)
Q Consensus 319 L~~~g~~~~--~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~ 394 (509)
|.+.+..-. .+-.+.++++|+.+++..... .......+..+++|+.|.++.+. +....+ +..+++|++|++.
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNAL---QALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLH 185 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcc---cccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECC
Confidence 666554310 112245566777777665211 11111233566778888877432 211111 4556778888774
Q ss_pred eeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccC---ccccCCccEEEEec--ccCCccHHHHHHHHH
Q 010478 395 VATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVP---RHSHQHLKLVELHG--FLGRPIDLELAFYIL 466 (509)
Q Consensus 395 ~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p---~c~~~~Lk~V~i~~--f~g~~~e~~l~~~lL 466 (509)
.+..... ....+..+++|+.|++... .+..++ -....+|+.+.+.+ +.+......+..++-
T Consensus 186 ~n~l~~~----~~~~~~~l~~L~~L~l~~n-------~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~ 251 (285)
T 1ozn_A 186 QNRVAHV----HPHAFRDLGRLMTLYLFAN-------NLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQ 251 (285)
T ss_dssp SSCCCEE----CTTTTTTCTTCCEEECCSS-------CCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHH
T ss_pred CCccccc----CHhHccCcccccEeeCCCC-------cCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHH
Confidence 4322211 1233456778888777652 112222 11346777777766 334444445555543
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.91 E-value=3.9e-06 Score=87.29 Aligned_cols=183 Identities=16% Similarity=0.130 Sum_probs=113.1
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEE-CCceeEE
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKIS-TPNLLSF 319 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~-aP~L~~L 319 (509)
+..+++|+.|+|++..+++-. ++.++.|++|++.++. ++.+.+ ..+++|+.|++.++. +..+.+. .++|+.|
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N~-l~~~~~-~~l~~L~~L~L~~N~-l~~l~~~~l~~L~~L 132 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNK-LTNLDV-TPLTKLTYLNCDTNK-LTKLDVSQNPLLTYL 132 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSC-CSCCCC-TTCTTCCEEECCSSC-CSCCCCTTCTTCCEE
T ss_pred hcccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCCC-Cceeec-CCCCcCCEEECCCCc-CCeecCCCCCcCCEE
Confidence 456788888888887776632 5678888888888875 333333 345788888888775 4444332 5778888
Q ss_pred EEecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeeccC
Q 010478 320 KYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLN 399 (509)
Q Consensus 320 ~~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~~ 399 (509)
.+.+..- ..+.+.++++|+.+++..... .+.. -+..+++|+.|.++.+. + ..++...+++|++|++..+.-.
T Consensus 133 ~l~~N~l-~~l~l~~l~~L~~L~l~~n~~--~~~~---~~~~l~~L~~L~ls~n~-l-~~l~l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 133 NCARNTL-TEIDVSHNTQLTELDCHLNKK--ITKL---DVTPQTQLTTLDCSFNK-I-TELDVSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp ECTTSCC-SCCCCTTCTTCCEEECTTCSC--CCCC---CCTTCTTCCEEECCSSC-C-CCCCCTTCTTCCEEECCSSCCS
T ss_pred ECCCCcc-ceeccccCCcCCEEECCCCCc--cccc---ccccCCcCCEEECCCCc-c-ceeccccCCCCCEEECcCCcCC
Confidence 8776652 123466777788777765211 0100 13456788888887432 2 2234566778888888544322
Q ss_pred ccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCccccCCccEEEEecc
Q 010478 400 RESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPRHSHQHLKLVELHGF 452 (509)
Q Consensus 400 ~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~c~~~~Lk~V~i~~f 452 (509)
..+ +..+|+|+.|++... .+..+|-....+|+.+.+.+-
T Consensus 205 ~~~-------l~~l~~L~~L~Ls~N-------~l~~ip~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 205 KLD-------LNQNIQLTFLDCSSN-------KLTEIDVTPLTQLTYFDCSVN 243 (457)
T ss_dssp CCC-------CTTCTTCSEEECCSS-------CCSCCCCTTCTTCSEEECCSS
T ss_pred eec-------cccCCCCCEEECcCC-------cccccCccccCCCCEEEeeCC
Confidence 221 567788888887652 222344334677888888763
No 35
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.91 E-value=2.1e-06 Score=83.02 Aligned_cols=174 Identities=18% Similarity=0.150 Sum_probs=109.9
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEE--EecccccceEEEEecccCccEEE---E-ECC
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLK--VVGSAIQLKHLRISTCYRLNEIK---I-STP 314 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~--i~~~~~~Lk~L~l~~c~~l~~l~---i-~aP 314 (509)
+..+++|+.|+|++..+++-. ...+.+++.|++|+|.++..++.+. .-..+++|+.|.+.++. +..+. + ..+
T Consensus 52 ~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 129 (285)
T 1ozn_A 52 FRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLA 129 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCT
T ss_pred cccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCc
Confidence 567888999999877654321 1235678899999998886443321 11235788889888875 33221 1 257
Q ss_pred ceeEEEEecCCc-cce-eeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccE
Q 010478 315 NLLSFKYFGPGQ-ELK-LHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTH 390 (509)
Q Consensus 315 ~L~~L~~~g~~~-~~~-~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~ 390 (509)
+|++|.+.+..- ... -.+.++++|+.+++...... ......+..+++|+.|.++.+. +....+ +..+++|++
T Consensus 130 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~ 205 (285)
T 1ozn_A 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS---SVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMT 205 (285)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCcccccCHhHhccCCCccEEECCCCccc---ccCHHHhcCccccCEEECCCCc-ccccCHhHccCcccccE
Confidence 888888887651 111 12567888999988763211 1112234568899999998443 322223 667889999
Q ss_pred EEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEe
Q 010478 391 LHLRVATLNRESLLGLASIMKACPFLQTLIVQFD 424 (509)
Q Consensus 391 L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~ 424 (509)
|+|..+.-... ....+..+++|+.|++...
T Consensus 206 L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 206 LYLFANNLSAL----PTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp EECCSSCCSCC----CHHHHTTCTTCCEEECCSS
T ss_pred eeCCCCcCCcC----CHHHcccCcccCEEeccCC
Confidence 99955433222 1345678999999998764
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.91 E-value=7.8e-06 Score=85.15 Aligned_cols=175 Identities=19% Similarity=0.119 Sum_probs=106.8
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeE-EEecccccceEEEEecccCccEEEE---ECCce
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSL-KVVGSAIQLKHLRISTCYRLNEIKI---STPNL 316 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l-~i~~~~~~Lk~L~l~~c~~l~~l~i---~aP~L 316 (509)
+..+++|+.|+|.+..+++-. ...+.+++.|+.|+|.++...... ..-..+++|+.|++.+|..+..+.. ..++|
T Consensus 148 ~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 226 (477)
T 2id5_A 148 FSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226 (477)
T ss_dssp STTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred ccCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccc
Confidence 567889999999887766432 234678899999999887532110 0112357889999988875554432 23478
Q ss_pred eEEEEecCCc-cce-eeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEE
Q 010478 317 LSFKYFGPGQ-ELK-LHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLH 392 (509)
Q Consensus 317 ~~L~~~g~~~-~~~-~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~ 392 (509)
++|.+.++.- ..+ ..+.++++|+.+++....- .......+..+++|+.|.|..+. +....+ +..+++|++|+
T Consensus 227 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 302 (477)
T 2id5_A 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI---STIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLN 302 (477)
T ss_dssp SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCC---CEECTTSCTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEE
T ss_pred cEEECcCCcccccCHHHhcCccccCeeECCCCcC---CccChhhccccccCCEEECCCCc-cceECHHHhcCcccCCEEE
Confidence 8888887651 111 2356778888888876221 11112334667888888887432 222222 56778888888
Q ss_pred EEeeccCccCHHHHHHHhhcCCCCcEEEEEEe
Q 010478 393 LRVATLNRESLLGLASIMKACPFLQTLIVQFD 424 (509)
Q Consensus 393 L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~ 424 (509)
|..+.-.... ...+..+++|+.|++...
T Consensus 303 L~~N~l~~~~----~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 303 VSGNQLTTLE----ESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CCSSCCSCCC----GGGBSCGGGCCEEECCSS
T ss_pred CCCCcCceeC----HhHcCCCcccCEEEccCC
Confidence 8544222211 234566788888887653
No 37
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.90 E-value=1.8e-06 Score=89.18 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=42.5
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEE--EecccccceEEEEecccCccEEEE----ECC
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLK--VVGSAIQLKHLRISTCYRLNEIKI----STP 314 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~--i~~~~~~Lk~L~l~~c~~l~~l~i----~aP 314 (509)
+.++++|+.|+|++..++.-. ...+.+++.|++|+|.++.- +.+. .-..+++|+.|++.++..+..+.. ..+
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~ 185 (440)
T 3zyj_A 108 FNGLANLNTLELFDNRLTTIP-NGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185 (440)
T ss_dssp GTTCSSCCEEECCSSCCSSCC-TTTSCSCSSCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS
T ss_pred ccCCccCCEEECCCCcCCeeC-HhHhhccccCceeeCCCCcc-cccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc
Confidence 344555666665554443210 11234455555555555431 1110 001234555555555443333321 134
Q ss_pred ceeEEEEecCCccceeeecCCCCceEEEEEe
Q 010478 315 NLLSFKYFGPGQELKLHIENAPQLVDISFRG 345 (509)
Q Consensus 315 ~L~~L~~~g~~~~~~~~~~~~~~L~~l~i~~ 345 (509)
+|++|.+.++.-..--.+..+++|+.+++..
T Consensus 186 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~ 216 (440)
T 3zyj_A 186 NLRYLNLAMCNLREIPNLTPLIKLDELDLSG 216 (440)
T ss_dssp SCCEEECTTSCCSSCCCCTTCSSCCEEECTT
T ss_pred ccCeecCCCCcCccccccCCCcccCEEECCC
Confidence 5555555444310101233444455554443
No 38
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.90 E-value=9.3e-06 Score=79.93 Aligned_cols=212 Identities=14% Similarity=0.091 Sum_probs=133.5
Q ss_pred ccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEECCceeEEEE
Q 010478 242 SGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKY 321 (509)
Q Consensus 242 ~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~~ 321 (509)
..+++|+.|+|++..+++-. ...+..++.|+.|+|+++.-.....+ ..+++|+.|++.++. +..+. ..|+|++|.+
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n~-l~~l~-~~~~L~~L~l 106 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLDL-ESLSTLRTLDLNNNY-VQELL-VGPSIETLHA 106 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCC-HHHHTTCTTCCEEECTTSCCEEEEEE-TTCTTCCEEECCSSE-EEEEE-ECTTCCEEEC
T ss_pred ccCCCCCEEECcCCccCcCC-HHHhhCCCcCCEEECCCCcCCcchhh-hhcCCCCEEECcCCc-ccccc-CCCCcCEEEC
Confidence 35689999999988776532 23468899999999999875443343 456899999999886 55555 3589999999
Q ss_pred ecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC---CCCCCcccEEEEEeecc
Q 010478 322 FGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS---EHELPNLTHLHLRVATL 398 (509)
Q Consensus 322 ~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~---~~~f~~Lk~L~L~~~~~ 398 (509)
.+..- ..+.....++|+.+++....-.. .....+..+++|+.|.++.+. +....+ ...+++|++|++..+.-
T Consensus 107 ~~n~l-~~~~~~~~~~L~~L~l~~N~l~~---~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 107 ANNNI-SRVSCSRGQGKKNIYLANNKITM---LRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp CSSCC-SEEEECCCSSCEEEECCSSCCCS---GGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred CCCcc-CCcCccccCCCCEEECCCCCCCC---ccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcC
Confidence 88762 23445567889999887632211 112233567899999998432 211111 24578999999954432
Q ss_pred CccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCc--cccCCccEEEEecccCCccHHHHHHHHHhcCccCCcEE
Q 010478 399 NRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPR--HSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMV 476 (509)
Q Consensus 399 ~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~--c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m~ 476 (509)
... . -...+++|+.|++... .+..++. ....+|+.+.+.+-.-.. +..-+...+.|+.+.
T Consensus 182 ~~~-----~-~~~~l~~L~~L~Ls~N-------~l~~l~~~~~~l~~L~~L~L~~N~l~~-----l~~~~~~l~~L~~L~ 243 (317)
T 3o53_A 182 YDV-----K-GQVVFAKLKTLDLSSN-------KLAFMGPEFQSAAGVTWISLRNNKLVL-----IEKALRFSQNLEHFD 243 (317)
T ss_dssp CEE-----E-CCCCCTTCCEEECCSS-------CCCEECGGGGGGTTCSEEECTTSCCCE-----ECTTCCCCTTCCEEE
T ss_pred ccc-----c-cccccccCCEEECCCC-------cCCcchhhhcccCcccEEECcCCcccc-----hhhHhhcCCCCCEEE
Confidence 211 1 1123789999988763 1222221 135678888876632221 011235667888887
Q ss_pred EEec
Q 010478 477 VNRT 480 (509)
Q Consensus 477 I~~~ 480 (509)
+...
T Consensus 244 l~~N 247 (317)
T 3o53_A 244 LRGN 247 (317)
T ss_dssp CTTC
T ss_pred ccCC
Confidence 7644
No 39
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.88 E-value=1.7e-06 Score=89.67 Aligned_cols=164 Identities=14% Similarity=0.116 Sum_probs=83.0
Q ss_pred ceeEEEEecCCc------cceeeecCCCCceEEEEEeccch--hhhhhhcccccCCCCccEEEEeechhhh---hccC--
Q 010478 315 NLLSFKYFGPGQ------ELKLHIENAPQLVDISFRGVMLT--RVRNVVGPITSCFPQLKTLELDSCDELY---AQFS-- 381 (509)
Q Consensus 315 ~L~~L~~~g~~~------~~~~~~~~~~~L~~l~i~~~~~~--~~~~~~~~l~~~l~~L~~L~L~~~~~~~---~~~~-- 381 (509)
+|++|.+.++.- ...-.+..+++|+++++....-. ........+....++|++|.++.+.--. ..++
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 455665555431 01224567888888888763211 1122222333446678888887542111 1112
Q ss_pred CCCCCcccEEEEEeeccCccCHHHHHHHhh-cCCCCcEEEEEEeecCCccCCccccCcc--ccCCccEEEEecccCCccH
Q 010478 382 EHELPNLTHLHLRVATLNRESLLGLASIMK-ACPFLQTLIVQFDYNGYKVGRRRKVPRH--SHQHLKLVELHGFLGRPID 458 (509)
Q Consensus 382 ~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~-~~P~Le~L~i~~~~~~~~~~~~~~~p~c--~~~~Lk~V~i~~f~g~~~e 458 (509)
+..+++|++|++..+.........+...+. ..++|+.|++....-.. .....++.. ...+|+.+.+.+..-....
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~--~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS--DNCRDLCGIVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT--THHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH--HHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence 445678888888544221112222322222 45688888886531000 000011111 3578888888765322211
Q ss_pred -HHHHHHHHhcCccCCcEEEEec
Q 010478 459 -LELAFYILENAMTLEKMVVNRT 480 (509)
Q Consensus 459 -~~l~~~lL~na~~Le~m~I~~~ 480 (509)
..+...+..+.+.|+.+.+...
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEECcCC
Confidence 2233445456788998888644
No 40
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.88 E-value=4.7e-06 Score=86.35 Aligned_cols=207 Identities=14% Similarity=0.114 Sum_probs=114.5
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEE--EecccccceEEEEecccCccEEEE----ECC
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLK--VVGSAIQLKHLRISTCYRLNEIKI----STP 314 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~--i~~~~~~Lk~L~l~~c~~l~~l~i----~aP 314 (509)
+..+++|+.|+|++..+.+-. ...+.+++.|++|+|.++.- +.+. .-..+++|+.|.+.++. +..+.- ..|
T Consensus 95 ~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 171 (452)
T 3zyi_A 95 FRHLHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNWL-TVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVP 171 (452)
T ss_dssp TTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCC-SBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCT
T ss_pred cCCCCCCCEEECCCCccCCcC-hhhccCcccCCEEECCCCcC-CccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCC
Confidence 567788888888776554321 12345678888888887642 2111 01234678888887765 443322 247
Q ss_pred ceeEEEEecCCcccee---eecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCccc
Q 010478 315 NLLSFKYFGPGQELKL---HIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLT 389 (509)
Q Consensus 315 ~L~~L~~~g~~~~~~~---~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk 389 (509)
+|+.|.+.+...-..+ .+.++++|+.+++........ .-+..+++|+.|+|+.+. +....+ +..+++|+
T Consensus 172 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 245 (452)
T 3zyi_A 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-----PNLTPLVGLEELEMSGNH-FPEIRPGSFHGLSSLK 245 (452)
T ss_dssp TCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-----CCCTTCTTCCEEECTTSC-CSEECGGGGTTCTTCC
T ss_pred cccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-----ccccccccccEEECcCCc-CcccCcccccCccCCC
Confidence 7777777763311111 245677777777765221111 113466788888887332 222222 56677888
Q ss_pred EEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCc---cccCCccEEEEec--ccCCccHHHHHHH
Q 010478 390 HLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPR---HSHQHLKLVELHG--FLGRPIDLELAFY 464 (509)
Q Consensus 390 ~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~---c~~~~Lk~V~i~~--f~g~~~e~~l~~~ 464 (509)
+|+|..+...... ...+..+++|+.|++... .+..++. ....+|+.+.+.+ +........+..+
T Consensus 246 ~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N-------~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~ 314 (452)
T 3zyi_A 246 KLWVMNSQVSLIE----RNAFDGLASLVELNLAHN-------NLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWW 314 (452)
T ss_dssp EEECTTSCCCEEC----TTTTTTCTTCCEEECCSS-------CCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHHHHHH
T ss_pred EEEeCCCcCceEC----HHHhcCCCCCCEEECCCC-------cCCccChHHhccccCCCEEEccCCCcCCCCCchHHHHH
Confidence 8888443222111 223567788888888653 2222221 1356788888877 3344443444444
Q ss_pred HHh
Q 010478 465 ILE 467 (509)
Q Consensus 465 lL~ 467 (509)
+-+
T Consensus 315 l~~ 317 (452)
T 3zyi_A 315 LRE 317 (452)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 41
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.85 E-value=7.2e-06 Score=85.97 Aligned_cols=188 Identities=14% Similarity=0.137 Sum_probs=121.6
Q ss_pred ccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEECCceeEEEE
Q 010478 242 SGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKY 321 (509)
Q Consensus 242 ~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~~ 321 (509)
..+++|+.|+|++..+++-. ...+..++.|+.|+|+++.-..... -..+++|+.|++.++. +..+.. .|+|++|.+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~-~~~L~~L~L 106 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV-GPSIETLHA 106 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCC-GGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE-CTTCCEEEC
T ss_pred ccCCCccEEEeeCCcCCCCC-HHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC-CCCcCEEEC
Confidence 45679999999998876521 1235789999999999987443333 3456899999999886 565553 489999999
Q ss_pred ecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC---CCCCCcccEEEEEeecc
Q 010478 322 FGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS---EHELPNLTHLHLRVATL 398 (509)
Q Consensus 322 ~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~---~~~f~~Lk~L~L~~~~~ 398 (509)
+++.- ..+.....++|+.+++...... ......+..+++|+.|+|+.+. +....+ ...+++|++|+|..+..
T Consensus 107 ~~N~l-~~~~~~~l~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 107 ANNNI-SRVSCSRGQGKKNIYLANNKIT---MLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp CSSCC-CCEEECCCSSCEEEECCSSCCC---SGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred cCCcC-CCCCccccCCCCEEECCCCCCC---CCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCcc
Confidence 88762 2334456788999988763221 1122234567899999998432 222222 23678999999955432
Q ss_pred CccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCc--cccCCccEEEEec
Q 010478 399 NRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPR--HSHQHLKLVELHG 451 (509)
Q Consensus 399 ~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~--c~~~~Lk~V~i~~ 451 (509)
... .. ...+|+|+.|++... .+..+|. ....+|+.+.+.+
T Consensus 182 ~~~-----~~-~~~l~~L~~L~Ls~N-------~l~~~~~~~~~l~~L~~L~Ls~ 223 (487)
T 3oja_A 182 YDV-----KG-QVVFAKLKTLDLSSN-------KLAFMGPEFQSAAGVTWISLRN 223 (487)
T ss_dssp CEE-----EC-CCCCTTCCEEECCSS-------CCCEECGGGGGGTTCSEEECTT
T ss_pred ccc-----cc-cccCCCCCEEECCCC-------CCCCCCHhHcCCCCccEEEecC
Confidence 211 11 124889999998763 1122221 1345677777655
No 42
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.84 E-value=1.6e-05 Score=74.64 Aligned_cols=189 Identities=15% Similarity=0.124 Sum_probs=99.9
Q ss_pred cCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEE--EecccccceEEEEecccCccEEE---E-ECCceeE
Q 010478 245 KYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLK--VVGSAIQLKHLRISTCYRLNEIK---I-STPNLLS 318 (509)
Q Consensus 245 p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~--i~~~~~~Lk~L~l~~c~~l~~l~---i-~aP~L~~ 318 (509)
++|+.|+|++..++.-. ...+.+++.|+.|++.++..++.+. .-..+++|+.|++.+|..+..+. + ..++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIP-SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEEC-TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEEC-HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 36777777766544211 0124567777777777765333221 11234677777777655455443 1 3567777
Q ss_pred EEEecCCc-cceeeecCCCCce---EEEEEec-cchhhhhhhcccccCCCCcc-EEEEeechhhhhccC--CCCCCcccE
Q 010478 319 FKYFGPGQ-ELKLHIENAPQLV---DISFRGV-MLTRVRNVVGPITSCFPQLK-TLELDSCDELYAQFS--EHELPNLTH 390 (509)
Q Consensus 319 L~~~g~~~-~~~~~~~~~~~L~---~l~i~~~-~~~~~~~~~~~l~~~l~~L~-~L~L~~~~~~~~~~~--~~~f~~Lk~ 390 (509)
|.+.+..- ..+ .+..+++|+ .+++... .- .......+..+++|+ .|.++.+. +. .++ ....++|++
T Consensus 110 L~l~~n~l~~lp-~~~~l~~L~~L~~L~l~~N~~l---~~i~~~~~~~l~~L~~~L~l~~n~-l~-~i~~~~~~~~~L~~ 183 (239)
T 2xwt_C 110 LGIFNTGLKMFP-DLTKVYSTDIFFILEITDNPYM---TSIPVNAFQGLCNETLTLKLYNNG-FT-SVQGYAFNGTKLDA 183 (239)
T ss_dssp EEEEEECCCSCC-CCTTCCBCCSEEEEEEESCTTC---CEECTTTTTTTBSSEEEEECCSCC-CC-EECTTTTTTCEEEE
T ss_pred EeCCCCCCcccc-ccccccccccccEEECCCCcch---hhcCcccccchhcceeEEEcCCCC-Cc-ccCHhhcCCCCCCE
Confidence 77766541 111 145556666 6666652 11 111122345677888 88886332 21 222 112267888
Q ss_pred EEEEeec-cCccCHHHHHHHhhcC-CCCcEEEEEEeecCCccCCccccCccccCCccEEEEec
Q 010478 391 LHLRVAT-LNRESLLGLASIMKAC-PFLQTLIVQFDYNGYKVGRRRKVPRHSHQHLKLVELHG 451 (509)
Q Consensus 391 L~L~~~~-~~~~~~~~l~~lL~~~-P~Le~L~i~~~~~~~~~~~~~~~p~c~~~~Lk~V~i~~ 451 (509)
|+|..+. -.... ...+..+ ++|+.|++.. ..+..+|...+.+|+.+.+.+
T Consensus 184 L~L~~n~~l~~i~----~~~~~~l~~~L~~L~l~~-------N~l~~l~~~~~~~L~~L~l~~ 235 (239)
T 2xwt_C 184 VYLNKNKYLTVID----KDAFGGVYSGPSLLDVSQ-------TSVTALPSKGLEHLKELIARN 235 (239)
T ss_dssp EECTTCTTCCEEC----TTTTTTCSBCCSEEECTT-------CCCCCCCCTTCTTCSEEECTT
T ss_pred EEcCCCCCcccCC----HHHhhccccCCcEEECCC-------CccccCChhHhccCceeeccC
Confidence 8884431 11111 1234566 8888888755 223344444567787777654
No 43
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.82 E-value=3.2e-05 Score=81.88 Aligned_cols=180 Identities=12% Similarity=0.092 Sum_probs=114.7
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeeccccee--eEEEecccccceEEEEecccCccEEEE----ECC
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLV--SLKVVGSAIQLKHLRISTCYRLNEIKI----STP 314 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~--~l~i~~~~~~Lk~L~l~~c~~l~~l~i----~aP 314 (509)
+..+++|++|+|++..+.+.. ...+.+++.|++|++.++.-.. ....-..+++|+.|++.++..+..+.. ..+
T Consensus 70 ~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 70 FYSLGSLEHLDLSDNHLSSLS-SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTCTTCCEEECTTSCCCSCC-HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred ccccccCCEEECCCCccCccC-HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 567899999999988776532 2346789999999999885321 111223467899999998875554431 257
Q ss_pred ceeEEEEecCCc--cceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhh---ccC-CCCCCcc
Q 010478 315 NLLSFKYFGPGQ--ELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYA---QFS-EHELPNL 388 (509)
Q Consensus 315 ~L~~L~~~g~~~--~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~---~~~-~~~f~~L 388 (509)
+|+.|.+.+..- ..+-.+..+++|+.+++......... ..+...+++|+.|.++.+.-... ..+ ...+++|
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L 225 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL---EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM 225 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHH---HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCC
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCcccccc---hhhHhhcccccEEEccCCccccccccccchhhhhhcc
Confidence 899998887651 12234566778888888763322111 12335688999999985431111 111 3457889
Q ss_pred cEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEe
Q 010478 389 THLHLRVATLNRESLLGLASIMKACPFLQTLIVQFD 424 (509)
Q Consensus 389 k~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~ 424 (509)
++|++............+...+..+++|+.|.+...
T Consensus 226 ~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261 (549)
T ss_dssp CEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred cceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence 999986553333333445666677888888887654
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.80 E-value=8.1e-06 Score=80.28 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=19.6
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeeccc
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSE 281 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~ 281 (509)
+..+++|+.|+|++..+++. +...+..++.|++|+|.++.
T Consensus 97 l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~ 136 (313)
T 1ogq_A 97 IAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNA 136 (313)
T ss_dssp GGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSE
T ss_pred HhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCCc
Confidence 34555666666655544321 11123455666666665553
No 45
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.79 E-value=1.1e-05 Score=71.88 Aligned_cols=41 Identities=0% Similarity=0.094 Sum_probs=35.7
Q ss_pred CcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceee
Q 010478 244 VKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVS 285 (509)
Q Consensus 244 ~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~ 285 (509)
-..|+.|+|+++.++++.+..+ ++|+.|++|+|.+|..+++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD 100 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIED 100 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCH
T ss_pred CceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCH
Confidence 3579999999999999998775 7999999999999987664
No 46
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.79 E-value=1.8e-05 Score=82.40 Aligned_cols=36 Identities=14% Similarity=0.246 Sum_probs=20.2
Q ss_pred cCCccEEEEecccCCccHHHHHHHHHhcCccCCcEEEEec
Q 010478 441 HQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVNRT 480 (509)
Q Consensus 441 ~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m~I~~~ 480 (509)
..+|+.+.+.+-.-.. +....+.+.+.|+.+.+...
T Consensus 295 l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 295 LNYLRVLNVSGNQLTT----LEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CTTCCEEECCSSCCSC----CCGGGBSCGGGCCEEECCSS
T ss_pred cccCCEEECCCCcCce----eCHhHcCCCcccCEEEccCC
Confidence 4678888887632111 11123455678888877643
No 47
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.77 E-value=2.7e-05 Score=82.39 Aligned_cols=223 Identities=16% Similarity=0.137 Sum_probs=118.6
Q ss_pred cCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEE--EecccccceEEEEecccCccEEE---E-ECCceeE
Q 010478 245 KYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLK--VVGSAIQLKHLRISTCYRLNEIK---I-STPNLLS 318 (509)
Q Consensus 245 p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~--i~~~~~~Lk~L~l~~c~~l~~l~---i-~aP~L~~ 318 (509)
++|++|+|++..+++.. ...+.+++.|++|+++++.- +.+. .-..+++|++|++.++. +..+. + ..++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRI-NTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp TTCCEEECCSSCCCEEC-SSTTSSCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCE
T ss_pred CCccEEECcCCccCccC-hhhhhcCCcccEEECCCCCc-CccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcE
Confidence 56666666665544211 01235566677777666632 1111 01234566666666654 22211 1 2466777
Q ss_pred EEEecCCc---cceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEE
Q 010478 319 FKYFGPGQ---ELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHL 393 (509)
Q Consensus 319 L~~~g~~~---~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L 393 (509)
|.+++..- ..+-.+.++++|+.+++..... .+......+..+++|++|.+..+. +....+ +..+++|++|++
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~--~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l 179 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET--FSEIRRIDFAGLTSLNELEIKALS-LRNYQSQSLKSIRDIHHLTL 179 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS--CCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEE
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCcc--ccccCHhhhhcccccCeeeccCCc-ccccChhhhhccccCceEec
Confidence 77766541 1123467788888888876320 111111234668889999998443 322233 667888999998
Q ss_pred EeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCC-ccCCccccCccccCCccEEEEecccCCccHHHHHHHHHhcCccC
Q 010478 394 RVATLNRESLLGLASIMKACPFLQTLIVQFDYNGY-KVGRRRKVPRHSHQHLKLVELHGFLGRPIDLELAFYILENAMTL 472 (509)
Q Consensus 394 ~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~-~~~~~~~~p~c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~L 472 (509)
...... .. -..++..+++|+.|++....-.. .... ... .-...+|+.+.+.+..-......-+...+.+.+.|
T Consensus 180 ~~n~~~--~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~-~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L 253 (549)
T 2z81_A 180 HLSESA--FL--LEIFADILSSVRYLELRDTNLARFQFSP-LPV-DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253 (549)
T ss_dssp ECSBST--TH--HHHHHHSTTTBSEEEEESCBCTTCCCCC-CSS-CCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred ccCccc--cc--chhhHhhcccccEEEccCCccccccccc-cch-hhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence 554321 11 23345678999999997742110 0000 000 11356788888776543333333333445566777
Q ss_pred CcEEEEe
Q 010478 473 EKMVVNR 479 (509)
Q Consensus 473 e~m~I~~ 479 (509)
+.+.+..
T Consensus 254 ~~l~l~~ 260 (549)
T 2z81_A 254 SEVEFDD 260 (549)
T ss_dssp CEEEEES
T ss_pred ccccccc
Confidence 7776653
No 48
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.77 E-value=9.9e-06 Score=72.29 Aligned_cols=67 Identities=15% Similarity=0.250 Sum_probs=53.4
Q ss_pred CccCcCCcEEEEeeEE-EChhhHHHHHhC---CccccceeeecccceeeEEE--ecccccceEEEEecccCcc
Q 010478 241 LSGVKYLRSLRLFSVN-VTGEILEFILHN---CPLLDQLSVVRSETLVSLKV--VGSAIQLKHLRISTCYRLN 307 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~-~~~~~l~~lls~---CP~Le~L~L~~c~~~~~l~i--~~~~~~Lk~L~l~~c~~l~ 307 (509)
..++++|++|+|++|. ++|+.+..+... |+.||+|+|++|..+++--+ -..+++|++|++.+|+.+.
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 4579999999999995 999999988863 89999999999987763211 1346888888888887544
No 49
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.76 E-value=1e-05 Score=78.08 Aligned_cols=36 Identities=28% Similarity=0.663 Sum_probs=33.7
Q ss_pred ccCCCCcHHHHHHHHcCCChhhHH-HHHhhhhhhhhh
Q 010478 112 DLMSLLPDDILINIISRLPLKEAA-KTSVLSSRWKYL 147 (509)
Q Consensus 112 D~is~LPdeiL~~ILs~Lp~~d~~-rts~lSrRWr~l 147 (509)
..+..||||||.+||++||.++++ |++.|||+|+++
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l 85 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL 85 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence 358899999999999999999999 999999999985
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.75 E-value=1.3e-05 Score=78.35 Aligned_cols=218 Identities=14% Similarity=0.058 Sum_probs=131.2
Q ss_pred cCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEe---cccccceEEEEecccCccEEE---EECCce
Q 010478 243 GVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVV---GSAIQLKHLRISTCYRLNEIK---ISTPNL 316 (509)
Q Consensus 243 ~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~---~~~~~Lk~L~l~~c~~l~~l~---i~aP~L 316 (509)
-.++|+.|+|++..+++- -..++.+++.|+.|+|.++.-...-.+. ..+++|+.|++.++. +..+. ...++|
T Consensus 26 ~~~~l~~L~L~~n~l~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L 103 (306)
T 2z66_A 26 IPSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQL 103 (306)
T ss_dssp CCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTC
T ss_pred CCCCCCEEECCCCccCcc-CHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCC
Confidence 347899999998876531 1234678999999999988532111111 235899999999886 44332 247899
Q ss_pred eEEEEecCCc-cce--eeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEE
Q 010478 317 LSFKYFGPGQ-ELK--LHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHL 391 (509)
Q Consensus 317 ~~L~~~g~~~-~~~--~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L 391 (509)
++|.+.+..- ... -.+..+++|+.+++..... .......+..+++|+.|.++.+.-.....+ +..+++|++|
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT---RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC---EECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CEEECCCCcccccccchhhhhccCCCEEECCCCcC---CccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence 9999887641 011 2456788899988876221 112223456789999999984432121334 6788999999
Q ss_pred EEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccC---ccccCCccEEEEecccCCccHHHHHHHHHhc
Q 010478 392 HLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVP---RHSHQHLKLVELHGFLGRPIDLELAFYILEN 468 (509)
Q Consensus 392 ~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p---~c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~n 468 (509)
++..+.-... ....+..+|+|+.|++... .+..++ -....+|+.+.+.+-.-..... ..+.+
T Consensus 181 ~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N-------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~ 245 (306)
T 2z66_A 181 DLSQCQLEQL----SPTAFNSLSSLQVLNMSHN-------NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK----QELQH 245 (306)
T ss_dssp ECTTSCCCEE----CTTTTTTCTTCCEEECTTS-------CCSBCCSGGGTTCTTCCEEECTTSCCCBCSS----SSCCC
T ss_pred ECCCCCcCCc----CHHHhcCCCCCCEEECCCC-------ccCccChhhccCcccCCEeECCCCCCcccCH----HHHHh
Confidence 9954422211 1234567899999998653 111111 1235678888887633211100 01223
Q ss_pred C-ccCCcEEEEec
Q 010478 469 A-MTLEKMVVNRT 480 (509)
Q Consensus 469 a-~~Le~m~I~~~ 480 (509)
. +.|+.+.+...
T Consensus 246 ~~~~L~~L~L~~N 258 (306)
T 2z66_A 246 FPSSLAFLNLTQN 258 (306)
T ss_dssp CCTTCCEEECTTC
T ss_pred hhccCCEEEccCC
Confidence 3 47777777543
No 51
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.74 E-value=1.7e-05 Score=85.35 Aligned_cols=184 Identities=20% Similarity=0.185 Sum_probs=96.4
Q ss_pred ccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEE-CCceeEEE
Q 010478 242 SGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKIS-TPNLLSFK 320 (509)
Q Consensus 242 ~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~-aP~L~~L~ 320 (509)
..+++|+.|+|++..+++-. +..+|.|+.|++.++. +..+.+ ..+|+.|++.++. +..+... .++|+.|.
T Consensus 168 ~~l~~L~~L~L~~N~l~~~~----~~~l~~L~~L~l~~n~-l~~l~~---~~~L~~L~ls~n~-l~~~~~~~~~~L~~L~ 238 (597)
T 3oja_B 168 QATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNL-LSTLAI---PIAVEELDASHNS-INVVRGPVNVELTILK 238 (597)
T ss_dssp TTCTTCCEEECTTSCCSBCC----GGGCTTCSEEECCSSC-CSEEEC---CTTCSEEECCSSC-CCEEECSCCSCCCEEE
T ss_pred hcCCcCcEEECcCCCCCCcC----hhhhhhhhhhhcccCc-cccccC---CchhheeeccCCc-ccccccccCCCCCEEE
Confidence 34455555555544443322 2334555555555442 122211 1456666666654 3333221 35677777
Q ss_pred EecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeecc
Q 010478 321 YFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATL 398 (509)
Q Consensus 321 ~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~ 398 (509)
+.++.-.....+..+++|+.+++..... .......+..+++|+.|.|+.+. + ..++ ...+++|++|+|..+..
T Consensus 239 L~~n~l~~~~~l~~l~~L~~L~Ls~N~l---~~~~~~~~~~l~~L~~L~Ls~N~-l-~~l~~~~~~l~~L~~L~Ls~N~l 313 (597)
T 3oja_B 239 LQHNNLTDTAWLLNYPGLVEVDLSYNEL---EKIMYHPFVKMQRLERLYISNNR-L-VALNLYGQPIPTLKVLDLSHNHL 313 (597)
T ss_dssp CCSSCCCCCGGGGGCTTCSEEECCSSCC---CEEESGGGTTCSSCCEEECTTSC-C-CEEECSSSCCTTCCEEECCSSCC
T ss_pred CCCCCCCCChhhccCCCCCEEECCCCcc---CCCCHHHhcCccCCCEEECCCCC-C-CCCCcccccCCCCcEEECCCCCC
Confidence 7766522223456777888888776221 11112334567888888887432 2 1122 45578888888855432
Q ss_pred CccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCccccCCccEEEEec
Q 010478 399 NRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPRHSHQHLKLVELHG 451 (509)
Q Consensus 399 ~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~c~~~~Lk~V~i~~ 451 (509)
.. +..-+..+|+|+.|++... .+..++.....+|+.+.+.|
T Consensus 314 ~~-----i~~~~~~l~~L~~L~L~~N-------~l~~~~~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 314 LH-----VERNQPQFDRLENLYLDHN-------SIVTLKLSTHHTLKNLTLSH 354 (597)
T ss_dssp CC-----CGGGHHHHTTCSEEECCSS-------CCCCCCCCTTCCCSEEECCS
T ss_pred Cc-----cCcccccCCCCCEEECCCC-------CCCCcChhhcCCCCEEEeeC
Confidence 21 2223456788888887663 12222333455677777665
No 52
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.73 E-value=1e-06 Score=97.69 Aligned_cols=217 Identities=15% Similarity=0.193 Sum_probs=118.1
Q ss_pred ccCcCCcEEEEeeEEEChhhHH--HHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE-E-ECCcee
Q 010478 242 SGVKYLRSLRLFSVNVTGEILE--FILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK-I-STPNLL 317 (509)
Q Consensus 242 ~~~p~Lk~L~L~~v~~~~~~l~--~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~-i-~aP~L~ 317 (509)
..+++|++|+|++..+++.... ..+.+|+.|++|++.++...+...+ ..+++|+.|++.+|.....+. + ..++|+
T Consensus 148 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~ 226 (768)
T 3rgz_A 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV-SRCVNLEFLDVSSNNFSTGIPFLGDCSALQ 226 (768)
T ss_dssp CCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC-TTCTTCCEEECCSSCCCSCCCBCTTCCSCC
T ss_pred ccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc-ccCCcCCEEECcCCcCCCCCcccccCCCCC
Confidence 4677888888887766554322 2367788888888887753322222 445788888887775321111 1 356777
Q ss_pred EEEEecCCc--cceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC---CCCCCcccEEE
Q 010478 318 SFKYFGPGQ--ELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS---EHELPNLTHLH 392 (509)
Q Consensus 318 ~L~~~g~~~--~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~---~~~f~~Lk~L~ 392 (509)
+|.+.++.- ..+-.+.++++|+.+++...... + .... ..+++|++|.+..+. +...+| ...+++|++|+
T Consensus 227 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~--~-~~~~--~~l~~L~~L~L~~n~-l~~~ip~~~~~~~~~L~~L~ 300 (768)
T 3rgz_A 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFV--G-PIPP--LPLKSLQYLSLAENK-FTGEIPDFLSGACDTLTGLD 300 (768)
T ss_dssp EEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCE--E-SCCC--CCCTTCCEEECCSSE-EEESCCCCSCTTCTTCSEEE
T ss_pred EEECcCCcCCCcccHHHhcCCCCCEEECCCCccc--C-ccCc--cccCCCCEEECcCCc-cCCccCHHHHhhcCcCCEEE
Confidence 777776651 12334566777777777652111 0 0111 156778888877432 222233 22347888888
Q ss_pred EEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCcc-ccC---ccccCCccEEEEecccCCccHHHHHHHHHhc
Q 010478 393 LRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRR-KVP---RHSHQHLKLVELHGFLGRPIDLELAFYILEN 468 (509)
Q Consensus 393 L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~-~~p---~c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~n 468 (509)
|..+.... .+...+..+++|+.|++.... .. .+| -....+|+++.+.+..-... +-..+...
T Consensus 301 Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~-------l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~---~p~~l~~l 366 (768)
T 3rgz_A 301 LSGNHFYG----AVPPFFGSCSLLESLALSSNN-------FSGELPMDTLLKMRGLKVLDLSFNEFSGE---LPESLTNL 366 (768)
T ss_dssp CCSSEEEE----CCCGGGGGCTTCCEEECCSSE-------EEEECCHHHHTTCTTCCEEECCSSEEEEC---CCTTHHHH
T ss_pred CcCCcCCC----ccchHHhcCCCccEEECCCCc-------ccCcCCHHHHhcCCCCCEEeCcCCccCcc---ccHHHHhh
Confidence 84432111 123346678888888876531 11 122 12356788888866321100 00011122
Q ss_pred CccCCcEEEEe
Q 010478 469 AMTLEKMVVNR 479 (509)
Q Consensus 469 a~~Le~m~I~~ 479 (509)
.+.|+.+.+..
T Consensus 367 ~~~L~~L~Ls~ 377 (768)
T 3rgz_A 367 SASLLTLDLSS 377 (768)
T ss_dssp TTTCSEEECCS
T ss_pred hcCCcEEEccC
Confidence 24788887764
No 53
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.71 E-value=1.9e-06 Score=92.64 Aligned_cols=28 Identities=11% Similarity=0.070 Sum_probs=17.7
Q ss_pred cCCccEEEEec--ccCCccHHHHHHHHHhc
Q 010478 441 HQHLKLVELHG--FLGRPIDLELAFYILEN 468 (509)
Q Consensus 441 ~~~Lk~V~i~~--f~g~~~e~~l~~~lL~n 468 (509)
..+|+.+.+.| +.+......|+.++-++
T Consensus 546 l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~ 575 (606)
T 3t6q_A 546 LSQQRTINLRQNPLDCTCSNIYFLEWYKEN 575 (606)
T ss_dssp HHTSSEEECTTCCEECSGGGHHHHHHHHHC
T ss_pred CCCCCEEeCCCCCccccCCcHHHHHHHHhC
Confidence 45677777766 44555556666666554
No 54
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.70 E-value=5e-06 Score=81.72 Aligned_cols=40 Identities=23% Similarity=0.138 Sum_probs=23.3
Q ss_pred ccCcCCcEEEEeeEEEChh--hHHHHHhC-Cccccceeeeccc
Q 010478 242 SGVKYLRSLRLFSVNVTGE--ILEFILHN-CPLLDQLSVVRSE 281 (509)
Q Consensus 242 ~~~p~Lk~L~L~~v~~~~~--~l~~lls~-CP~Le~L~L~~c~ 281 (509)
..+++|+.|+|++..+++. .+..+... .+.|++|+|.++.
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~ 160 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC
Confidence 4567777777777666543 23332211 3677777777664
No 55
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.68 E-value=9.2e-06 Score=77.57 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=32.0
Q ss_pred CCCCcHHHHHHHHcCCChhhHHHHHhhhhhhhh
Q 010478 114 MSLLPDDILINIISRLPLKEAAKTSVLSSRWKY 146 (509)
Q Consensus 114 is~LPdeiL~~ILs~Lp~~d~~rts~lSrRWr~ 146 (509)
|++||+||+.+|||||+.+|+++.+.|||+||.
T Consensus 5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~ 37 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE 37 (312)
T ss_dssp HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999996
No 56
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.67 E-value=7.2e-06 Score=82.37 Aligned_cols=140 Identities=16% Similarity=0.198 Sum_probs=73.8
Q ss_pred CCceEEEEEeccch-hhhhhhcccccCCC-CccEEEEeechhhhh---ccC--CCCC-CcccEEEEEeeccCccCHHHHH
Q 010478 336 PQLVDISFRGVMLT-RVRNVVGPITSCFP-QLKTLELDSCDELYA---QFS--EHEL-PNLTHLHLRVATLNRESLLGLA 407 (509)
Q Consensus 336 ~~L~~l~i~~~~~~-~~~~~~~~l~~~l~-~L~~L~L~~~~~~~~---~~~--~~~f-~~Lk~L~L~~~~~~~~~~~~l~ 407 (509)
.+|+++++....-. .....+...+..++ +|++|.|+.+.--.. .+. ...+ ++|++|+|..+.-.......+.
T Consensus 138 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~ 217 (362)
T 3goz_A 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELA 217 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHH
Confidence 35666666542111 00112223334454 899999985431111 111 3345 5999999966544445555577
Q ss_pred HHhhc-CCCCcEEEEEEeecCC-ccCCccccCccccCCccEEEEecccCCccHHHHHHHHHhcCccCCcEE
Q 010478 408 SIMKA-CPFLQTLIVQFDYNGY-KVGRRRKVPRHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMV 476 (509)
Q Consensus 408 ~lL~~-~P~Le~L~i~~~~~~~-~~~~~~~~p~c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m~ 476 (509)
..+.. .++|+.|++....-.. ....+... .....+|+.+.+.+..-..-.-+.+..+.+..+.++.++
T Consensus 218 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~-~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~ 287 (362)
T 3goz_A 218 YIFSSIPNHVVSLNLCLNCLHGPSLENLKLL-KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII 287 (362)
T ss_dssp HHHHHSCTTCCEEECCSSCCCCCCHHHHHHT-TTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEE
T ss_pred HHHhcCCCCceEEECcCCCCCcHHHHHHHHH-HhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceE
Confidence 77766 5699999997741100 00000000 123577999999886511112244455555556666655
No 57
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.67 E-value=0.00012 Score=76.95 Aligned_cols=151 Identities=13% Similarity=0.098 Sum_probs=79.6
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhC--CccccceeeecccceeeE--EEe----ccccc------------------
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHN--CPLLDQLSVVRSETLVSL--KVV----GSAIQ------------------ 294 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~--CP~Le~L~L~~c~~~~~l--~i~----~~~~~------------------ 294 (509)
+..+++|+.|+|.+..+.+..+..+... ++.|++|++.+|.-.+.+ .+. ..+++
T Consensus 216 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~ 295 (520)
T 2z7x_B 216 LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295 (520)
T ss_dssp GGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHH
T ss_pred hccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhh
Confidence 4678899999999999888766555542 678999999887522111 000 12233
Q ss_pred --------ceEEEEecccCccEEE--EECCceeEEEEecCCcc--ceeeecCCCCceEEEEEeccchhhhhhhcccccCC
Q 010478 295 --------LKHLRISTCYRLNEIK--ISTPNLLSFKYFGPGQE--LKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCF 362 (509)
Q Consensus 295 --------Lk~L~l~~c~~l~~l~--i~aP~L~~L~~~g~~~~--~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l 362 (509)
|+.|.+.++. +..+. -..++|++|.+++..-. .+..+..+++|+.+++....-..... +...+..+
T Consensus 296 ~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~l 373 (520)
T 2z7x_B 296 YEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK-IAEMTTQM 373 (520)
T ss_dssp HHHHHTCCCSEEEEESSC-CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH-HHHHHTTC
T ss_pred hcccccCceeEEEcCCCc-cccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcccc-chHHHhhC
Confidence 4444444443 11111 13567777777665411 12334567777777776522111111 11223456
Q ss_pred CCccEEEEeechhhhhccC---CCCCCcccEEEEE
Q 010478 363 PQLKTLELDSCDELYAQFS---EHELPNLTHLHLR 394 (509)
Q Consensus 363 ~~L~~L~L~~~~~~~~~~~---~~~f~~Lk~L~L~ 394 (509)
++|+.|+++.+. +...++ +..+++|++|++.
T Consensus 374 ~~L~~L~Ls~N~-l~~~l~~~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 374 KSLQQLDISQNS-VSYDEKKGDCSWTKSLLSLNMS 407 (520)
T ss_dssp TTCCEEECCSSC-CBCCGGGCSCCCCTTCCEEECC
T ss_pred CCCCEEECCCCc-CCcccccchhccCccCCEEECc
Confidence 677777776322 111122 3344555666553
No 58
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.66 E-value=7.2e-06 Score=78.86 Aligned_cols=36 Identities=17% Similarity=0.052 Sum_probs=17.8
Q ss_pred ccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecc
Q 010478 242 SGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRS 280 (509)
Q Consensus 242 ~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c 280 (509)
..+++|+.|+|++..+.+-. -+..++.|+.|++.++
T Consensus 60 ~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLHDIS---ALKELTNLTYLILTGN 95 (272)
T ss_dssp GGCTTCCEEECTTSCCCCCG---GGTTCTTCCEEECTTS
T ss_pred ccCCCCcEEECCCCCCCCch---hhcCCCCCCEEECCCC
Confidence 34555555555554444311 2344555555555554
No 59
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.64 E-value=6.1e-06 Score=88.65 Aligned_cols=97 Identities=18% Similarity=0.206 Sum_probs=43.2
Q ss_pred cCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE------EECCce
Q 010478 243 GVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK------ISTPNL 316 (509)
Q Consensus 243 ~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~------i~aP~L 316 (509)
.+++|++|++.+..+.+ +..+ .++.|++|++.++.......+. .+++|+.|++.++. +..+. ...++|
T Consensus 305 ~~~~L~~L~l~~n~l~~--lp~~--~l~~L~~L~l~~n~~~~~~~~~-~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L 378 (606)
T 3vq2_A 305 KHFKWQSLSIIRCQLKQ--FPTL--DLPFLKSLTLTMNKGSISFKKV-ALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSL 378 (606)
T ss_dssp TTCCCSEEEEESCCCSS--CCCC--CCSSCCEEEEESCSSCEECCCC-CCTTCCEEECCSSC-EEEEEECCHHHHCCSCC
T ss_pred ccccCCEEEcccccCcc--cccC--CCCccceeeccCCcCccchhhc-cCCCCCEEECcCCc-cCCCcchhhhhccCCcc
Confidence 34455555555554421 1111 4555555555555433322221 23555555555543 22221 123556
Q ss_pred eEEEEecCCc-cceeeecCCCCceEEEEEe
Q 010478 317 LSFKYFGPGQ-ELKLHIENAPQLVDISFRG 345 (509)
Q Consensus 317 ~~L~~~g~~~-~~~~~~~~~~~L~~l~i~~ 345 (509)
++|.+.++.- ..+-.+.++++|+.+++..
T Consensus 379 ~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~ 408 (606)
T 3vq2_A 379 RHLDLSFNGAIIMSANFMGLEELQHLDFQH 408 (606)
T ss_dssp CEEECCSCSEEEECCCCTTCTTCCEEECTT
T ss_pred cEeECCCCccccchhhccCCCCCCeeECCC
Confidence 6665555431 0112344555566655544
No 60
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.63 E-value=7.5e-06 Score=87.93 Aligned_cols=222 Identities=14% Similarity=0.059 Sum_probs=134.0
Q ss_pred CCccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEE---EecccccceEEEEecccCccEEEE----E
Q 010478 240 ELSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLK---VVGSAIQLKHLRISTCYRLNEIKI----S 312 (509)
Q Consensus 240 ~~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~---i~~~~~~Lk~L~l~~c~~l~~l~i----~ 312 (509)
.+..+++|+.|+|.+..+....-...+..++.|++|++.++....... .-..+++|+.|.+.++. +..+.. .
T Consensus 320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 398 (606)
T 3t6q_A 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKE 398 (606)
T ss_dssp CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTT
T ss_pred hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcC
Confidence 456789999999998765432222235689999999999986432211 11345899999999886 333321 3
Q ss_pred CCceeEEEEecCCcc---ceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC----CCCC
Q 010478 313 TPNLLSFKYFGPGQE---LKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS----EHEL 385 (509)
Q Consensus 313 aP~L~~L~~~g~~~~---~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~----~~~f 385 (509)
.|+|+.|.+.+..-. ....+.++++|+.+++..... .......+..+++|+.|.++.+.-....++ +..+
T Consensus 399 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l 475 (606)
T 3t6q_A 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL---DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475 (606)
T ss_dssp CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC---BTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC
T ss_pred CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc---CCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccC
Confidence 588999998876511 112367789999999876321 112224456789999999985432111121 6678
Q ss_pred CcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCcccc-Cc--cccCCccEEEEecccCCccHHHHH
Q 010478 386 PNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKV-PR--HSHQHLKLVELHGFLGRPIDLELA 462 (509)
Q Consensus 386 ~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~-p~--c~~~~Lk~V~i~~f~g~~~e~~l~ 462 (509)
++|++|+|..+.-... ....+..+++|+.|++... .+... |+ ...++| .+.+.+-.-.. +.
T Consensus 476 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N-------~l~~~~~~~l~~l~~L-~L~L~~N~l~~----~~ 539 (606)
T 3t6q_A 476 GRLEILVLSFCDLSSI----DQHAFTSLKMMNHVDLSHN-------RLTSSSIEALSHLKGI-YLNLASNHISI----IL 539 (606)
T ss_dssp TTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECCSS-------CCCGGGGGGGTTCCSC-EEECCSSCCCC----CC
T ss_pred CCccEEECCCCccCcc----ChhhhccccCCCEEECCCC-------ccCcCChhHhCccccc-EEECcCCcccc----cC
Confidence 9999999954422211 1234678899999999763 11111 11 123455 55555422111 11
Q ss_pred HHHHhcCccCCcEEEEecC
Q 010478 463 FYILENAMTLEKMVVNRTN 481 (509)
Q Consensus 463 ~~lL~na~~Le~m~I~~~~ 481 (509)
...+.+.+.|+.+.+....
T Consensus 540 ~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 540 PSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp GGGHHHHHTSSEEECTTCC
T ss_pred HhhcccCCCCCEEeCCCCC
Confidence 1123445888888876443
No 61
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.63 E-value=7.7e-06 Score=84.48 Aligned_cols=108 Identities=18% Similarity=0.189 Sum_probs=59.7
Q ss_pred ccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCcccc
Q 010478 359 TSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKV 436 (509)
Q Consensus 359 ~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~ 436 (509)
+..+++|+.|+++.+. +....+ +..+++|++|+|..+.-... ....+..+++|+.|++... .+...
T Consensus 295 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N-------~l~~~ 362 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSI----DSRMFENLDKLEVLDLSYN-------HIRAL 362 (455)
T ss_dssp TTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEE----CGGGGTTCTTCCEEECCSS-------CCCEE
T ss_pred cccCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCccCCc----ChhHhcCcccCCEEECCCC-------ccccc
Confidence 4556777777776332 212222 55667788888744322211 1234567788888877653 11111
Q ss_pred -Cc--cccCCccEEEEecccCCccHHHHHHHHHhcCccCCcEEEEecCC
Q 010478 437 -PR--HSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVNRTNY 482 (509)
Q Consensus 437 -p~--c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m~I~~~~~ 482 (509)
|. ....+|+++.+.+-.-.. +....+++.+.|+.+.+....-
T Consensus 363 ~~~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 363 GDQSFLGLPNLKELALDTNQLKS----VPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSC----CCTTTTTTCTTCCEEECCSSCB
T ss_pred ChhhccccccccEEECCCCcccc----CCHhHhccCCcccEEEccCCCc
Confidence 11 235788888887632211 1111346778999988876543
No 62
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.61 E-value=0.00012 Score=81.89 Aligned_cols=227 Identities=15% Similarity=0.095 Sum_probs=110.0
Q ss_pred CccCcCCcEEEEeeEEECh---hhHHHHHhCCccccceeeecccceeeE--EEec-----ccccceEEEEeccc------
Q 010478 241 LSGVKYLRSLRLFSVNVTG---EILEFILHNCPLLDQLSVVRSETLVSL--KVVG-----SAIQLKHLRISTCY------ 304 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~---~~l~~lls~CP~Le~L~L~~c~~~~~l--~i~~-----~~~~Lk~L~l~~c~------ 304 (509)
+..+++|+.|+|++..+.+ +++..+-. +.|+.|.+.++...... .+.. ...+|+.|++.++.
T Consensus 144 ~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~--~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 221 (844)
T 3j0a_A 144 FGKLNSLKSIDFSSNQIFLVCEHELEPLQG--KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT 221 (844)
T ss_dssp GGTCSSCCEEEEESSCCCCCCSGGGHHHHH--CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTT
T ss_pred HhhCCCCCEEECCCCcCCeeCHHHcccccC--CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHH
Confidence 4567888888888766543 34444322 66777777766422211 0100 00137777776652
Q ss_pred ----------CccEEEEE-------------------------CCceeEEEEecCCc--cceeeecCCCCceEEEEEecc
Q 010478 305 ----------RLNEIKIS-------------------------TPNLLSFKYFGPGQ--ELKLHIENAPQLVDISFRGVM 347 (509)
Q Consensus 305 ----------~l~~l~i~-------------------------aP~L~~L~~~g~~~--~~~~~~~~~~~L~~l~i~~~~ 347 (509)
.+..+.+. .++|+.|.+++..- ..+..+..+++|+.+++....
T Consensus 222 ~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 301 (844)
T 3j0a_A 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK 301 (844)
T ss_dssp SGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC
T ss_pred HHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc
Confidence 11222221 25677777665541 012235567777777776522
Q ss_pred chhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEee
Q 010478 348 LTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDY 425 (509)
Q Consensus 348 ~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~ 425 (509)
-. ......+..+++|+.|.|+.+. +....+ +..+++|++|++..+.-.... ...+..+++|+.|++....
T Consensus 302 i~---~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 302 IN---KIADEAFYGLDNLQVLNLSYNL-LGELYSSNFYGLPKVAYIDLQKNHIAIIQ----DQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CC---EECTTTTTTCSSCCEEEEESCC-CSCCCSCSCSSCTTCCEEECCSCCCCCCC----SSCSCSCCCCCEEEEETCC
T ss_pred CC---CCChHHhcCCCCCCEEECCCCC-CCccCHHHhcCCCCCCEEECCCCCCCccC----hhhhcCCCCCCEEECCCCC
Confidence 11 1111233566777777776432 212222 555667777777443221111 1124556777777776531
Q ss_pred cC-Cc-----------cCCccccCccccCCccEEEEecccCCccHHHHHHHHHhcCccCCcEEEEecC
Q 010478 426 NG-YK-----------VGRRRKVPRHSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVNRTN 481 (509)
Q Consensus 426 ~~-~~-----------~~~~~~~p~c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m~I~~~~ 481 (509)
-. .+ .+.+..+|. ...+++.+.+.+-.-.. +. ..+.+.+.+.|+.+.+....
T Consensus 374 l~~i~~~~~L~~L~l~~N~l~~l~~-~~~~l~~L~ls~N~l~~--l~-~~~~~~~l~~L~~L~Ls~N~ 437 (844)
T 3j0a_A 374 LTTIHFIPSIPDIFLSGNKLVTLPK-INLTANLIHLSENRLEN--LD-ILYFLLRVPHLQILILNQNR 437 (844)
T ss_dssp SCCCSSCCSCSEEEEESCCCCCCCC-CCTTCCEEECCSCCCCS--ST-THHHHTTCTTCCEEEEESCC
T ss_pred CCcccCCCCcchhccCCCCcccccc-cccccceeecccCcccc--Cc-hhhhhhcCCccceeeCCCCc
Confidence 00 00 011222222 13445555554422111 01 12345678899998888654
No 63
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.60 E-value=2e-05 Score=76.67 Aligned_cols=147 Identities=19% Similarity=0.180 Sum_probs=81.6
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEECCceeEEE
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFK 320 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~ 320 (509)
+..+++|+.|+|++..+++-.- +++++.|+.|.+.++.- +.+.--..+++|+.|++.++. +..+
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~L~~n~-i~~~----------- 127 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKV-KDLSSLKDLKKLKSLSLEHNG-ISDI----------- 127 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCC-CCGGGGTTCTTCCEEECTTSC-CCCC-----------
T ss_pred HhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcC-CCChhhccCCCCCEEECCCCc-CCCC-----------
Confidence 4556777777777766654221 66777777777777642 111111233566666665554 2211
Q ss_pred EecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeeccCc
Q 010478 321 YFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNR 400 (509)
Q Consensus 321 ~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~~~ 400 (509)
-.+..+++|+.+++....-... ..+..+++|+.|.++.+. +....+...+++|++|++..+.-..
T Consensus 128 ---------~~l~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 128 ---------NGLVHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp ---------GGGGGCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCB
T ss_pred ---------hhhcCCCCCCEEEccCCcCCcc-----hhhccCCCCCEEEccCCc-cccchhhcCCCccCEEECCCCcCCC
Confidence 1234455566665554211111 223567788888887432 2122225677888888885443222
Q ss_pred cCHHHHHHHhhcCCCCcEEEEEEe
Q 010478 401 ESLLGLASIMKACPFLQTLIVQFD 424 (509)
Q Consensus 401 ~~~~~l~~lL~~~P~Le~L~i~~~ 424 (509)
+. -+..+++|+.|++...
T Consensus 193 -----l~-~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 193 -----LR-ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp -----CG-GGTTCTTCSEEEEEEE
T ss_pred -----Ch-hhccCCCCCEEECcCC
Confidence 11 2677888888888775
No 64
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.58 E-value=1.2e-05 Score=80.73 Aligned_cols=68 Identities=19% Similarity=0.237 Sum_probs=39.5
Q ss_pred ccccCC-CCccEEEEeechhhh---hccC--CCC-CCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEe
Q 010478 357 PITSCF-PQLKTLELDSCDELY---AQFS--EHE-LPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFD 424 (509)
Q Consensus 357 ~l~~~l-~~L~~L~L~~~~~~~---~~~~--~~~-f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~ 424 (509)
..+..+ ++|++|+|+.+.--. ..++ ... .++|++|+|..+.-.......+..+++.+++|+.|++...
T Consensus 189 ~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 189 KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred HHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence 344455 378888877432100 1111 222 3578888886654444555566777777888888887764
No 65
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.57 E-value=2.8e-05 Score=78.72 Aligned_cols=143 Identities=14% Similarity=0.162 Sum_probs=71.2
Q ss_pred cCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEE--EecccccceEEEEecccCccEEE----EECCce
Q 010478 243 GVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLK--VVGSAIQLKHLRISTCYRLNEIK----ISTPNL 316 (509)
Q Consensus 243 ~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~--i~~~~~~Lk~L~l~~c~~l~~l~----i~aP~L 316 (509)
.+++|+.|++.+..++.-. ..++.+++.|+.|+|.++.- +.+. .-..+++|+.|++.++. +..+. -..++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~-~~~~~~l~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLL 119 (390)
T ss_dssp GGCCCSEEEEESCEESEEC-THHHHHCCCCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred ccCCceEEEecCCchhhCC-hhHhcccccCcEEECCCCcc-cccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCC
Confidence 4577777777776654311 12345677777777777642 2211 01234677777777665 22221 124566
Q ss_pred eEEEEecCCc-ccee-eecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEE
Q 010478 317 LSFKYFGPGQ-ELKL-HIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHL 393 (509)
Q Consensus 317 ~~L~~~g~~~-~~~~-~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L 393 (509)
++|.+.+..- ..+. .+.++++|+.+++....- .......+..+++|+.|.++.+. + ...+...+++|++|++
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~l~~n~-l-~~~~~~~l~~L~~L~l 193 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL---ERIEDDTFQATTSLQNLQLSSNR-L-THVDLSLIPSLFHANV 193 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC---CBCCTTTTSSCTTCCEEECCSSC-C-SBCCGGGCTTCSEEEC
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCcc---CccChhhccCCCCCCEEECCCCc-C-Cccccccccccceeec
Confidence 6666665541 0111 134566666666654211 11111223456667777666322 1 1112344555566555
No 66
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.56 E-value=1.3e-05 Score=86.18 Aligned_cols=80 Identities=19% Similarity=0.131 Sum_probs=45.8
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE--EECCceeE
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK--ISTPNLLS 318 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~--i~aP~L~~ 318 (509)
+..+++|+.|+|++..+.+-.- +..++.|+.|.|.+|.- ..+.--..+++|+.|.+.++. +..+. ...|+|+.
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l-~~l~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~ 135 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKI-KDLSSLKDLKKLKSLSLEHNG-ISDINGLVHLPQLES 135 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCC-CCCTTSTTCTTCCEEECTTSC-CCCCGGGGGCTTCSE
T ss_pred HccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCC-CCChhhccCCCCCEEEecCCC-CCCCccccCCCccCE
Confidence 4567888888888776654321 67788888888887742 222111234667777776665 22211 02345555
Q ss_pred EEEecCC
Q 010478 319 FKYFGPG 325 (509)
Q Consensus 319 L~~~g~~ 325 (509)
|.++++.
T Consensus 136 L~Ls~N~ 142 (605)
T 1m9s_A 136 LYLGNNK 142 (605)
T ss_dssp EECCSSC
T ss_pred EECCCCc
Confidence 5554443
No 67
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.55 E-value=3.8e-05 Score=72.06 Aligned_cols=169 Identities=11% Similarity=0.037 Sum_probs=95.5
Q ss_pred CccCcCCcEEEEeeEE-EChhhHHHHHhCCccccceeeecccceeeEEE--ecccccceEEEEecccCccEEE--EECCc
Q 010478 241 LSGVKYLRSLRLFSVN-VTGEILEFILHNCPLLDQLSVVRSETLVSLKV--VGSAIQLKHLRISTCYRLNEIK--ISTPN 315 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~-~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i--~~~~~~Lk~L~l~~c~~l~~l~--i~aP~ 315 (509)
+..+++|+.|+|++.. ++.-. ...+.+++.|++|++.+|..++.+.. -..+++|+.|.+.++. +..+. -..++
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~~~~l~~ 128 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTKVYS 128 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCCCTTCCB
T ss_pred ccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccccccccc
Confidence 5577888888888664 33210 11246788889998888665554321 1235788888888775 22221 12455
Q ss_pred ee---EEEEecC-C-ccc-eeeecCCCCce-EEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCC-
Q 010478 316 LL---SFKYFGP-G-QEL-KLHIENAPQLV-DISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHEL- 385 (509)
Q Consensus 316 L~---~L~~~g~-~-~~~-~~~~~~~~~L~-~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f- 385 (509)
|+ .|.+.+. . ... .-.+.++++|+ .+++....-..+. ...+.. ++|+.|.+..+..+....+ +..+
T Consensus 129 L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~---~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~ 204 (239)
T 2xwt_C 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ---GYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVY 204 (239)
T ss_dssp CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC---TTTTTT-CEEEEEECTTCTTCCEECTTTTTTCS
T ss_pred cccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC---HhhcCC-CCCCEEEcCCCCCcccCCHHHhhccc
Confidence 65 8888776 3 111 11256677888 8877652211111 112223 6788888875533322212 4556
Q ss_pred CcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEE
Q 010478 386 PNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQ 422 (509)
Q Consensus 386 ~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~ 422 (509)
++|++|+|..+.-..... ..+++|+.|.+.
T Consensus 205 ~~L~~L~l~~N~l~~l~~-------~~~~~L~~L~l~ 234 (239)
T 2xwt_C 205 SGPSLLDVSQTSVTALPS-------KGLEHLKELIAR 234 (239)
T ss_dssp BCCSEEECTTCCCCCCCC-------TTCTTCSEEECT
T ss_pred cCCcEEECCCCccccCCh-------hHhccCceeecc
Confidence 789999885432221111 156788888764
No 68
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.54 E-value=0.00012 Score=82.04 Aligned_cols=208 Identities=13% Similarity=0.050 Sum_probs=110.0
Q ss_pred CCccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEE--------
Q 010478 240 ELSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKI-------- 311 (509)
Q Consensus 240 ~~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i-------- 311 (509)
.+..+++|+.|+|++..+..-. ...+.+++.|+.|+|+++.-. . +. .+++|+.|.+.++. +..+.-
T Consensus 333 ~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~-~--i~-~~~~L~~L~l~~N~-l~~l~~~~~~l~~L 406 (844)
T 3j0a_A 333 NFYGLPKVAYIDLQKNHIAIIQ-DQTFKFLEKLQTLDLRDNALT-T--IH-FIPSIPDIFLSGNK-LVTLPKINLTANLI 406 (844)
T ss_dssp SCSSCTTCCEEECCSCCCCCCC-SSCSCSCCCCCEEEEETCCSC-C--CS-SCCSCSEEEEESCC-CCCCCCCCTTCCEE
T ss_pred HhcCCCCCCEEECCCCCCCccC-hhhhcCCCCCCEEECCCCCCC-c--cc-CCCCcchhccCCCC-ccccccccccccee
Confidence 3567788888888876654321 112466888888888877421 1 11 13566666666554 121111
Q ss_pred -----------------ECCceeEEEEecCCcc---ceeeecCCCCceEEEEEeccchhh--hhhhcccccCCCCccEEE
Q 010478 312 -----------------STPNLLSFKYFGPGQE---LKLHIENAPQLVDISFRGVMLTRV--RNVVGPITSCFPQLKTLE 369 (509)
Q Consensus 312 -----------------~aP~L~~L~~~g~~~~---~~~~~~~~~~L~~l~i~~~~~~~~--~~~~~~l~~~l~~L~~L~ 369 (509)
..|+|+.|.+++..-. ....+...++|+.+++........ .......+.++++|+.|+
T Consensus 407 ~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~ 486 (844)
T 3j0a_A 407 HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLY 486 (844)
T ss_dssp ECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCC
T ss_pred ecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEE
Confidence 3466677766655410 011233456677766665221100 011123345667788777
Q ss_pred EeechhhhhccC--CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCccccCCccEE
Q 010478 370 LDSCDELYAQFS--EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPRHSHQHLKLV 447 (509)
Q Consensus 370 L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~c~~~~Lk~V 447 (509)
|+.+ .+....+ +..+++|++|+|..+.-...... .+ .++|+.|+++.. .+...+.-.+.+|+.+
T Consensus 487 Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~----~~--~~~L~~L~Ls~N-------~l~~~~~~~~~~L~~l 552 (844)
T 3j0a_A 487 LNHN-YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN----DL--PANLEILDISRN-------QLLAPNPDVFVSLSVL 552 (844)
T ss_dssp CCHH-HHTTCCTTSSSSCCSCSEEEEESCCCSSCCCC----CC--CSCCCEEEEEEE-------CCCCCCSCCCSSCCEE
T ss_pred CCCC-cccccChhHccchhhhheeECCCCCCCccChh----hh--hccccEEECCCC-------cCCCCChhHhCCcCEE
Confidence 7743 3322222 56778888888865533211110 11 178888888774 2222222335688999
Q ss_pred EEec--ccCCccHHHHHHHHHh
Q 010478 448 ELHG--FLGRPIDLELAFYILE 467 (509)
Q Consensus 448 ~i~~--f~g~~~e~~l~~~lL~ 467 (509)
.+.| +.+...-..|+.++-.
T Consensus 553 ~l~~Np~~C~c~~~~f~~~~~~ 574 (844)
T 3j0a_A 553 DITHNKFICECELSTFINWLNH 574 (844)
T ss_dssp EEEEECCCCSSSCCSHHHHHHH
T ss_pred EecCCCcccccccHHHHHHHHh
Confidence 9987 4443333345555433
No 69
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.52 E-value=2.1e-05 Score=87.23 Aligned_cols=38 Identities=16% Similarity=0.023 Sum_probs=21.8
Q ss_pred ccCCccEEEEecccCCccHHHHHHHHHhcCccCCcEEEEec
Q 010478 440 SHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVNRT 480 (509)
Q Consensus 440 ~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m~I~~~ 480 (509)
...+|+++.+.+..-.. + +-...+.+.+.|+.+.+...
T Consensus 316 ~l~~L~~L~L~~n~l~~-~--ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 316 SCSLLESLALSSNNFSG-E--LPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp GCTTCCEEECCSSEEEE-E--CCHHHHTTCTTCCEEECCSS
T ss_pred cCCCccEEECCCCcccC-c--CCHHHHhcCCCCCEEeCcCC
Confidence 35678888876532110 0 11123567788998887643
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.50 E-value=0.00012 Score=70.92 Aligned_cols=191 Identities=24% Similarity=0.196 Sum_probs=100.7
Q ss_pred CcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEECCceeEEEEec
Q 010478 244 VKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYFG 323 (509)
Q Consensus 244 ~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~~~g 323 (509)
.++|+.|+|++..++.-. ...+.+++.|+.|.|.++. ++.+.....+++|+.|++.++. +..
T Consensus 30 ~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~--------------- 91 (290)
T 1p9a_G 30 PKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQ-LQS--------------- 91 (290)
T ss_dssp CTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSC-CSS---------------
T ss_pred CCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCEEECCCCc-CCc---------------
Confidence 356777777766554321 1224566777777777654 2222222334555555555443 111
Q ss_pred CCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeeccCcc
Q 010478 324 PGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATLNRE 401 (509)
Q Consensus 324 ~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~~~ 401 (509)
.+..+..+++|+.+++....- .......+..+++|+.|.|+.+ .+....+ +..+++|++|+|..+.-...
T Consensus 92 ----l~~~~~~l~~L~~L~l~~N~l---~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 92 ----LPLLGQTLPALTVLDVSFNRL---TSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp ----CCCCTTTCTTCCEEECCSSCC---CCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred ----CchhhccCCCCCEEECCCCcC---cccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCCcc
Confidence 122234556666666654211 1111133456788888888743 2212111 45677888888844322211
Q ss_pred CHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCcc--ccCCccEEEEec--ccCCccHHHHHHHHHhcCcc
Q 010478 402 SLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPRH--SHQHLKLVELHG--FLGRPIDLELAFYILENAMT 471 (509)
Q Consensus 402 ~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~c--~~~~Lk~V~i~~--f~g~~~e~~l~~~lL~na~~ 471 (509)
. ..++...++|+.|++... .+..+|.. ...+|+.+.+.| +........+..++-++...
T Consensus 164 ~----~~~~~~l~~L~~L~L~~N-------~l~~ip~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~~~~ 226 (290)
T 1p9a_G 164 P----AGLLNGLENLDTLLLQEN-------SLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAEN 226 (290)
T ss_dssp C----TTTTTTCTTCCEEECCSS-------CCCCCCTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHHHTGGG
T ss_pred C----HHHhcCcCCCCEEECCCC-------cCCccChhhcccccCCeEEeCCCCccCcCccHHHHHHHHhCccc
Confidence 1 234567788888888652 22333322 234688888876 33344445666666665543
No 71
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.48 E-value=6e-06 Score=81.02 Aligned_cols=109 Identities=17% Similarity=0.069 Sum_probs=59.6
Q ss_pred cceEEEEeecCCCChhhHHHHHHHHhccCcEEEEEEecCCCcceeeecccccccccCC--ccCcCCcEEEEeeEEEChhh
Q 010478 184 INKFRLCLYSKDLHESEITNWVYSALSKRVQIFELELWPRLKNYTFLENCYNNLKSEL--SGVKYLRSLRLFSVNVTGEI 261 (509)
Q Consensus 184 l~~l~l~~~~~~~~~~~~~~wl~~a~~~~v~~L~L~~~~~~~~~~~p~~~~~~L~~~~--~~~p~Lk~L~L~~v~~~~~~ 261 (509)
++.+.+.- .......+..........++++|++....-.. ..|. .+ ..+++|++|+|++..+++..
T Consensus 66 l~~l~l~~--~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~--------~~~~~~~~~L~~L~Ls~n~i~~~~ 133 (310)
T 4glp_A 66 VRRLTVGA--AQVPAQLLVGALRVLAYSRLKELTLEDLKITG--TMPP--------LPLEATGLALSSLRLRNVSWATGR 133 (310)
T ss_dssp CCEEEECS--CCCBHHHHHHHHHHHHHSCCCEEEEESCCCBS--CCCC--------CSSSCCCBCCSSCEEESCCCSSTT
T ss_pred eeEEEEeC--CcCCHHHHHHHHHhcccCceeEEEeeCCEecc--chhh--------hhhhccCCCCCEEEeecccccchh
Confidence 55555432 12233445555555555678888887543110 1111 12 56788999999888877521
Q ss_pred --HH-HHHhCCccccceeeecccceeeE-EEecccccceEEEEeccc
Q 010478 262 --LE-FILHNCPLLDQLSVVRSETLVSL-KVVGSAIQLKHLRISTCY 304 (509)
Q Consensus 262 --l~-~lls~CP~Le~L~L~~c~~~~~l-~i~~~~~~Lk~L~l~~c~ 304 (509)
+. .-+..++.|++|+|.++.-.... ..-..+++|+.|++.++.
T Consensus 134 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 180 (310)
T 4glp_A 134 SWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNP 180 (310)
T ss_dssp SSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCT
T ss_pred hhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCC
Confidence 21 22347888888888887532111 011123567777766654
No 72
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.47 E-value=2.6e-05 Score=83.88 Aligned_cols=100 Identities=15% Similarity=0.118 Sum_probs=48.9
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEE--ECCceeE
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKI--STPNLLS 318 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i--~aP~L~~ 318 (509)
+..+++|+.|+|++..+.+-. -+..++.|+.|+|.++.-. .+.--..+++|+.|.+.+|. +..+.. ..++|+.
T Consensus 83 l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~l~-~l~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~ 157 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIKDLS---SLKDLKKLKSLSLEHNGIS-DINGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDT 157 (605)
T ss_dssp GGGCTTCCEEECCSSCCCCCT---TSTTCTTCCEEECTTSCCC-CCGGGGGCTTCSEEECCSSC-CCCCGGGGSCTTCSE
T ss_pred hccCCCCCEEECcCCCCCCCh---hhccCCCCCEEEecCCCCC-CCccccCCCccCEEECCCCc-cCCchhhcccCCCCE
Confidence 345666777777666554421 2456677777777666421 11111234666667666654 222210 2355555
Q ss_pred EEEecCCccceeeecCCCCceEEEEEe
Q 010478 319 FKYFGPGQELKLHIENAPQLVDISFRG 345 (509)
Q Consensus 319 L~~~g~~~~~~~~~~~~~~L~~l~i~~ 345 (509)
|.++++.-.....+..+++|+.+++..
T Consensus 158 L~Ls~N~l~~~~~l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 158 LSLEDNQISDIVPLAGLTKLQNLYLSK 184 (605)
T ss_dssp EECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred EECcCCcCCCchhhccCCCCCEEECcC
Confidence 555554311111144455555555544
No 73
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.47 E-value=6.7e-05 Score=81.23 Aligned_cols=174 Identities=9% Similarity=0.059 Sum_probs=98.2
Q ss_pred CccCcCCcEEEEeeEE-EChhh----HHHH--HhCCccccceeeecccceeeEE---EecccccceEEEEecccCccEEE
Q 010478 241 LSGVKYLRSLRLFSVN-VTGEI----LEFI--LHNCPLLDQLSVVRSETLVSLK---VVGSAIQLKHLRISTCYRLNEIK 310 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~-~~~~~----l~~l--ls~CP~Le~L~L~~c~~~~~l~---i~~~~~~Lk~L~l~~c~~l~~l~ 310 (509)
+..+++|+.|+|++.. +++.. +..+ +..++.|+.|++.++.-. .+. .-..+++|+.|.+.++.....+.
T Consensus 269 l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh
Confidence 5678899999998887 76622 3332 234688999999887533 221 11245788888888776211332
Q ss_pred --EECCceeEEEEecCCc-cceeeecCCCC-ceEEEEEeccchhhhhhhcccccC--CCCccEEEEeechhhhhccC--C
Q 010478 311 --ISTPNLLSFKYFGPGQ-ELKLHIENAPQ-LVDISFRGVMLTRVRNVVGPITSC--FPQLKTLELDSCDELYAQFS--E 382 (509)
Q Consensus 311 --i~aP~L~~L~~~g~~~-~~~~~~~~~~~-L~~l~i~~~~~~~~~~~~~~l~~~--l~~L~~L~L~~~~~~~~~~~--~ 382 (509)
-..++|+.|.+.+..- ..+-.+.++++ |+.+++....... +...+.. +++|+.|.++.+. +....| +
T Consensus 348 ~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~----lp~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l 422 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY----IPNIFDAKSVSVMSAIDFSYNE-IGSVDGKNF 422 (636)
T ss_dssp CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS----CCSCCCTTCSSCEEEEECCSSC-TTTTTTCSS
T ss_pred hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcc----cchhhhhcccCccCEEECcCCc-CCCcchhhh
Confidence 1346788887776641 11223455666 8888877622111 1112222 3478888887432 212222 2
Q ss_pred C-------CCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEe
Q 010478 383 H-------ELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFD 424 (509)
Q Consensus 383 ~-------~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~ 424 (509)
+ ..++|++|+|..+.-... -..+++.+++|+.|++...
T Consensus 423 ~~~~~~~~~~~~L~~L~Ls~N~l~~l----p~~~~~~l~~L~~L~Ls~N 467 (636)
T 4eco_A 423 DPLDPTPFKGINVSSINLSNNQISKF----PKELFSTGSPLSSINLMGN 467 (636)
T ss_dssp CTTCSSCCCCCCEEEEECCSSCCCSC----CTHHHHTTCCCSEEECCSS
T ss_pred cccccccccCCCCCEEECcCCccCcC----CHHHHccCCCCCEEECCCC
Confidence 2 455788888854432211 1235566788888887653
No 74
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.46 E-value=4.1e-05 Score=74.40 Aligned_cols=125 Identities=20% Similarity=0.217 Sum_probs=74.1
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEECCceeEEE
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFK 320 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~ 320 (509)
+..+++|+.|+|++..+++- .. +..++.|+.|++.++.- +.+.--..+++|+.|.+.++. +..+.
T Consensus 86 l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~~n~i-~~~~~l~~l~~L~~L~l~~n~-l~~~~---------- 150 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKDL--SS-LKDLKKLKSLSLEHNGI-SDINGLVHLPQLESLYLGNNK-ITDIT---------- 150 (291)
T ss_dssp GTTCTTCCEEECCSSCCCCG--GG-GTTCTTCCEEECTTSCC-CCCGGGGGCTTCCEEECCSSC-CCCCG----------
T ss_pred cccCCCCCEEECCCCcCCCC--hh-hccCCCCCEEECCCCcC-CCChhhcCCCCCCEEEccCCc-CCcch----------
Confidence 56789999999998887652 22 78899999999999853 222111234677788777765 22211
Q ss_pred EecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC-CCCCCcccEEEEEeec
Q 010478 321 YFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS-EHELPNLTHLHLRVAT 397 (509)
Q Consensus 321 ~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~-~~~f~~Lk~L~L~~~~ 397 (509)
.+..+++|+.+++....-.... . +..+++|+.|.++.+. + ..++ ...+++|+.|++..+.
T Consensus 151 ----------~l~~l~~L~~L~L~~N~l~~~~----~-l~~l~~L~~L~L~~N~-i-~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 151 ----------VLSRLTKLDTLSLEDNQISDIV----P-LAGLTKLQNLYLSKNH-I-SDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp ----------GGGGCTTCSEEECCSSCCCCCG----G-GTTCTTCCEEECCSSC-C-CBCGGGTTCTTCSEEEEEEEE
T ss_pred ----------hhccCCCCCEEEccCCccccch----h-hcCCCccCEEECCCCc-C-CCChhhccCCCCCEEECcCCc
Confidence 1334455555555442111111 1 3566777777776432 2 1122 5667778888876553
No 75
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.44 E-value=9.4e-06 Score=79.60 Aligned_cols=62 Identities=16% Similarity=0.199 Sum_probs=41.5
Q ss_pred cCcCCcEEEEeeEEEChhhHHHHHh--CCccccceeeecccceeeE--EEe-cccccceEEEEeccc
Q 010478 243 GVKYLRSLRLFSVNVTGEILEFILH--NCPLLDQLSVVRSETLVSL--KVV-GSAIQLKHLRISTCY 304 (509)
Q Consensus 243 ~~p~Lk~L~L~~v~~~~~~l~~lls--~CP~Le~L~L~~c~~~~~l--~i~-~~~~~Lk~L~l~~c~ 304 (509)
....++.|.+..+.+++..+..+.. .++.|++|++.++...+.. .+. ..+++|+.|++.++.
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 128 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS 128 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc
Confidence 3456788889888888876665544 3567999999988633211 111 345778888888765
No 76
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.41 E-value=2e-05 Score=84.67 Aligned_cols=208 Identities=14% Similarity=0.106 Sum_probs=119.8
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEECCceeEEE
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFK 320 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~ 320 (509)
+..+++|+.|+|++..+.+-. ...+.+++.|+.|+|.++.- +.+.+ ..+++|+.|.+.++. +..+. ..++|+.|.
T Consensus 143 ~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l-~~~~~-~~l~~L~~L~l~~n~-l~~l~-~~~~L~~L~ 217 (597)
T 3oja_B 143 FHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNRL-THVDL-SLIPSLFHANVSYNL-LSTLA-IPIAVEELD 217 (597)
T ss_dssp TTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECTTSCC-SBCCG-GGCTTCSEEECCSSC-CSEEE-CCTTCSEEE
T ss_pred hccCCCCCEEEeeCCcCCCCC-hhhhhcCCcCcEEECcCCCC-CCcCh-hhhhhhhhhhcccCc-ccccc-CCchhheee
Confidence 356777777777766554321 12245677777777777642 22221 234677777777664 44443 245788888
Q ss_pred EecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeecc
Q 010478 321 YFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATL 398 (509)
Q Consensus 321 ~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~ 398 (509)
+++..- ..+.....++|+.+++........ ..+..+++|+.|+|+.+. +....+ +..+++|++|+|..+..
T Consensus 218 ls~n~l-~~~~~~~~~~L~~L~L~~n~l~~~-----~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l 290 (597)
T 3oja_B 218 ASHNSI-NVVRGPVNVELTILKLQHNNLTDT-----AWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRL 290 (597)
T ss_dssp CCSSCC-CEEECSCCSCCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTSCC
T ss_pred ccCCcc-cccccccCCCCCEEECCCCCCCCC-----hhhccCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCCCC
Confidence 777651 122223346788887776322111 334678899999998433 323333 66788999999954322
Q ss_pred CccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCc--cccCCccEEEEecccCCccHHHHHHHHHhcCccCCcEE
Q 010478 399 NRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPR--HSHQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMV 476 (509)
Q Consensus 399 ~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~--c~~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m~ 476 (509)
.. +......+|+|+.|++... .+..+|. ..+.+|+.+.+.+-.-..-. +...+.|+.+.
T Consensus 291 ~~-----l~~~~~~l~~L~~L~Ls~N-------~l~~i~~~~~~l~~L~~L~L~~N~l~~~~-------~~~~~~L~~L~ 351 (597)
T 3oja_B 291 VA-----LNLYGQPIPTLKVLDLSHN-------HLLHVERNQPQFDRLENLYLDHNSIVTLK-------LSTHHTLKNLT 351 (597)
T ss_dssp CE-----EECSSSCCTTCCEEECCSS-------CCCCCGGGHHHHTTCSEEECCSSCCCCCC-------CCTTCCCSEEE
T ss_pred CC-----CCcccccCCCCcEEECCCC-------CCCccCcccccCCCCCEEECCCCCCCCcC-------hhhcCCCCEEE
Confidence 21 2233456889999998763 1222332 13567888887663321111 34557777777
Q ss_pred EEe
Q 010478 477 VNR 479 (509)
Q Consensus 477 I~~ 479 (509)
+..
T Consensus 352 l~~ 354 (597)
T 3oja_B 352 LSH 354 (597)
T ss_dssp CCS
T ss_pred eeC
Confidence 654
No 77
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.41 E-value=3.6e-05 Score=75.99 Aligned_cols=101 Identities=12% Similarity=0.090 Sum_probs=48.5
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE----EECCce
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK----ISTPNL 316 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~----i~aP~L 316 (509)
+..+++|++|+|++..+++-. ...+.+++.|++|+|.++.- +.+.... .++|+.|.+.++. +..+. -..++|
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l-~~l~~~~-~~~L~~L~l~~n~-l~~~~~~~~~~l~~L 147 (330)
T 1xku_A 72 FKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQL-KELPEKM-PKTLQELRVHENE-ITKVRKSVFNGLNQM 147 (330)
T ss_dssp TTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCC-SBCCSSC-CTTCCEEECCSSC-CCBBCHHHHTTCTTC
T ss_pred hccCCCCCEEECCCCcCCeeC-HHHhcCCCCCCEEECCCCcC-CccChhh-cccccEEECCCCc-ccccCHhHhcCCccc
Confidence 445667777777665544321 11245567777777766542 1111111 1466666666554 22221 124556
Q ss_pred eEEEEecCCc----cceeeecCCCCceEEEEEe
Q 010478 317 LSFKYFGPGQ----ELKLHIENAPQLVDISFRG 345 (509)
Q Consensus 317 ~~L~~~g~~~----~~~~~~~~~~~L~~l~i~~ 345 (509)
+.|.+.+..- .....+.++++|+.+++..
T Consensus 148 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp CEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred cEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence 6666655431 0112234455666665554
No 78
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.41 E-value=1.3e-05 Score=70.86 Aligned_cols=61 Identities=21% Similarity=0.179 Sum_probs=36.3
Q ss_pred cCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEeccc
Q 010478 243 GVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCY 304 (509)
Q Consensus 243 ~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~ 304 (509)
..++|+.|+|++..+++..+...+..++.|+.|++.+|. ++.+..-..+++|+.|++.++.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~ 82 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENR 82 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCc
Confidence 346777777777776644444445667777777777765 2222111234566666666654
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.41 E-value=2e-05 Score=75.65 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=20.1
Q ss_pred cCCcEEEEeeEEEChhhHHHHHhCCccccceeeeccc
Q 010478 245 KYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSE 281 (509)
Q Consensus 245 p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~ 281 (509)
++|+.|+|++..+++-. ...+.+++.|++|+|.++.
T Consensus 37 ~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~ 72 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNK 72 (270)
T ss_dssp TTCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSSC
T ss_pred CCCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCCc
Confidence 45777777665554311 1124556777777776653
No 80
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.39 E-value=0.00017 Score=80.57 Aligned_cols=173 Identities=10% Similarity=0.092 Sum_probs=95.3
Q ss_pred CccCcCCcEEEEeeEE-ECh----hhHHHHH---hCCccccceeeecccceeeEEE---ecccccceEEEEecccCccEE
Q 010478 241 LSGVKYLRSLRLFSVN-VTG----EILEFIL---HNCPLLDQLSVVRSETLVSLKV---VGSAIQLKHLRISTCYRLNEI 309 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~-~~~----~~l~~ll---s~CP~Le~L~L~~c~~~~~l~i---~~~~~~Lk~L~l~~c~~l~~l 309 (509)
+..+++|+.|+|++.. +++ ..+..+- ..+|.|+.|+|.++... .+.- -..+++|+.|.+.++. +..+
T Consensus 511 l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~-l~~l 588 (876)
T 4ecn_A 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK-VRHL 588 (876)
T ss_dssp GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC-CCBC
T ss_pred HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC-cccc
Confidence 5677888888888776 665 2233322 45668888888887533 2211 1245778888888775 3333
Q ss_pred E-E-ECCceeEEEEecCCc-cceeeecCCCC-ceEEEEEeccchhhhhhhcccccCC--CCccEEEEeechhhhhccC--
Q 010478 310 K-I-STPNLLSFKYFGPGQ-ELKLHIENAPQ-LVDISFRGVMLTRVRNVVGPITSCF--PQLKTLELDSCDELYAQFS-- 381 (509)
Q Consensus 310 ~-i-~aP~L~~L~~~g~~~-~~~~~~~~~~~-L~~l~i~~~~~~~~~~~~~~l~~~l--~~L~~L~L~~~~~~~~~~~-- 381 (509)
. + ..++|+.|.+++..- ..+-.+.++++ |+.+++...... .+...+... ++|+.|.|+.+. +....|
T Consensus 589 p~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~----~lp~~~~~~~~~~L~~L~Ls~N~-l~g~ip~l 663 (876)
T 4ecn_A 589 EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK----YIPNIFNAKSVYVMGSVDFSYNK-IGSEGRNI 663 (876)
T ss_dssp CCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC----SCCSCCCTTCSSCEEEEECCSSC-TTTTSSSC
T ss_pred hhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC----cCchhhhccccCCCCEEECcCCc-CCCccccc
Confidence 2 1 256788888877651 12223455666 888777762211 111222222 347788877432 211111
Q ss_pred ---CC--CCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEe
Q 010478 382 ---EH--ELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFD 424 (509)
Q Consensus 382 ---~~--~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~ 424 (509)
.. ..++|++|+|..+.-.. . -..++..+++|+.|++...
T Consensus 664 ~~~l~~~~~~~L~~L~Ls~N~L~~--l--p~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 664 SCSMDDYKGINASTVTLSYNEIQK--F--PTELFATGSPISTIILSNN 707 (876)
T ss_dssp SSCTTTCCCCCEEEEECCSSCCCS--C--CHHHHHTTCCCSEEECCSC
T ss_pred hhhhccccCCCcCEEEccCCcCCc--c--CHHHHccCCCCCEEECCCC
Confidence 11 33478888874432221 1 1345567788888887653
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.37 E-value=2.8e-05 Score=74.62 Aligned_cols=169 Identities=12% Similarity=0.109 Sum_probs=93.8
Q ss_pred ccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEE----ECCcee
Q 010478 242 SGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKI----STPNLL 317 (509)
Q Consensus 242 ~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i----~aP~L~ 317 (509)
..+++|+.|.+.+..+.+-. -+..+|.|+.|++.++.- ..+..-..+++|+.|.+.++. +..+.- ..++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~---~l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ---GIQYLPNVRYLALGGNKL-HDISALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT---TGGGCTTCCEEECTTSCC-CCCGGGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCC
T ss_pred ccccceeeeeeCCCCccccc---ccccCCCCcEEECCCCCC-CCchhhcCCCCCCEEECCCCc-cCccChhHhcCCcCCC
Confidence 35677777777766554321 145677888888877642 222111234677777777764 333221 246777
Q ss_pred EEEEecCCcc-c-eeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEE
Q 010478 318 SFKYFGPGQE-L-KLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHL 393 (509)
Q Consensus 318 ~L~~~g~~~~-~-~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L 393 (509)
+|.+.+..-. . .-.+.++++|+.+++....- .......+..+++|+.|.++.+. +....+ +..+++|++|++
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL---QSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCcc---CccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEEC
Confidence 7777765411 1 11245667777777765221 11112334567788888887442 222222 456778888887
Q ss_pred EeeccCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478 394 RVATLNRESLLGLASIMKACPFLQTLIVQF 423 (509)
Q Consensus 394 ~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~ 423 (509)
..+..... ....+..+++|+.|++..
T Consensus 189 ~~N~l~~~----~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 189 YQNQLKSV----PDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp CSSCCSCC----CTTTTTTCTTCCEEECCS
T ss_pred CCCcCCcc----CHHHHhCCcCCCEEEccC
Confidence 54322211 123456778888887765
No 82
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.37 E-value=3.3e-05 Score=75.78 Aligned_cols=14 Identities=21% Similarity=0.219 Sum_probs=7.2
Q ss_pred CCccccceeeeccc
Q 010478 268 NCPLLDQLSVVRSE 281 (509)
Q Consensus 268 ~CP~Le~L~L~~c~ 281 (509)
+++.|++|+|.++.
T Consensus 93 ~l~~L~~L~L~~n~ 106 (312)
T 1wwl_A 93 GISGLQELTLENLE 106 (312)
T ss_dssp TTSCCCEEEEEEEB
T ss_pred CcCCccEEEccCCc
Confidence 34555555555543
No 83
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.35 E-value=2.2e-05 Score=77.12 Aligned_cols=172 Identities=17% Similarity=0.144 Sum_probs=84.5
Q ss_pred CccCcCCcEEEEee-EEEChhhHHHHHhCCccccceeeecccceeeEE-EecccccceEEEEecccCccEEE---EECCc
Q 010478 241 LSGVKYLRSLRLFS-VNVTGEILEFILHNCPLLDQLSVVRSETLVSLK-VVGSAIQLKHLRISTCYRLNEIK---ISTPN 315 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~-v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~-i~~~~~~Lk~L~l~~c~~l~~l~---i~aP~ 315 (509)
+..+++|+.|+|++ -.+.+. +..-+.+++.|++|+|.++.-.+.+. .-..+++|+.|++.++.-...+. -..|+
T Consensus 72 l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 150 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150 (313)
T ss_dssp GGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred HhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence 45677788888774 333221 11224567778888887765321110 01234677777777664110111 12567
Q ss_pred eeEEEEecCCc--cceeeecCCC-CceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccE
Q 010478 316 LLSFKYFGPGQ--ELKLHIENAP-QLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTH 390 (509)
Q Consensus 316 L~~L~~~g~~~--~~~~~~~~~~-~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~ 390 (509)
|++|.+.+..- ..+..+...+ +|+.+++...... ......+..+. |+.|.++.+. +....+ +..+++|++
T Consensus 151 L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~---~~~~~~~~~l~-L~~L~Ls~N~-l~~~~~~~~~~l~~L~~ 225 (313)
T 1ogq_A 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT---GKIPPTFANLN-LAFVDLSRNM-LEGDASVLFGSDKNTQK 225 (313)
T ss_dssp CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE---EECCGGGGGCC-CSEEECCSSE-EEECCGGGCCTTSCCSE
T ss_pred CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee---ccCChHHhCCc-ccEEECcCCc-ccCcCCHHHhcCCCCCE
Confidence 77777766551 1222344555 6777776652111 00111122333 7777776322 211222 456667777
Q ss_pred EEEEeeccCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478 391 LHLRVATLNRESLLGLASIMKACPFLQTLIVQF 423 (509)
Q Consensus 391 L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~ 423 (509)
|+|..+.... . ...+..+++|+.|++..
T Consensus 226 L~L~~N~l~~-~----~~~~~~l~~L~~L~Ls~ 253 (313)
T 1ogq_A 226 IHLAKNSLAF-D----LGKVGLSKNLNGLDLRN 253 (313)
T ss_dssp EECCSSEECC-B----GGGCCCCTTCCEEECCS
T ss_pred EECCCCceee-e----cCcccccCCCCEEECcC
Confidence 7774432211 0 11145567777777654
No 84
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.33 E-value=6e-05 Score=77.49 Aligned_cols=38 Identities=24% Similarity=0.474 Sum_probs=35.6
Q ss_pred ccccCCCCcHHHHHHHHcCCChhhHHHHHhhhhhhhhh
Q 010478 110 VEDLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKYL 147 (509)
Q Consensus 110 ~~D~is~LPdeiL~~ILs~Lp~~d~~rts~lSrRWr~l 147 (509)
..|.|+.||+||+.+||++|+.+|.++++.|||+|+++
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~ 48 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKI 48 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHH
T ss_pred ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999999999999999874
No 85
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.32 E-value=0.00023 Score=76.63 Aligned_cols=88 Identities=18% Similarity=0.066 Sum_probs=41.3
Q ss_pred cCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCcc
Q 010478 360 SCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPRH 439 (509)
Q Consensus 360 ~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~c 439 (509)
..+++|+.|.++.+ .+ ..+| ..+++|++|+|..+.-... . ..+++|+.|++.. +.+..+|..
T Consensus 218 ~~~~~L~~L~Ls~N-~L-~~lp-~~l~~L~~L~Ls~N~L~~l-----p---~~~~~L~~L~Ls~-------N~L~~lp~~ 279 (622)
T 3g06_A 218 ALPSGLKELIVSGN-RL-TSLP-VLPSELKELMVSGNRLTSL-----P---MLPSGLLSLSVYR-------NQLTRLPES 279 (622)
T ss_dssp CCCTTCCEEECCSS-CC-SCCC-CCCTTCCEEECCSSCCSCC-----C---CCCTTCCEEECCS-------SCCCSCCGG
T ss_pred CCCCCCCEEEccCC-cc-CcCC-CCCCcCcEEECCCCCCCcC-----C---cccccCcEEeCCC-------CCCCcCCHH
Confidence 33455666666532 11 1122 3445666666643321111 1 1456666666654 222334432
Q ss_pred --ccCCccEEEEecccCCccHHHHHHHH
Q 010478 440 --SHQHLKLVELHGFLGRPIDLELAFYI 465 (509)
Q Consensus 440 --~~~~Lk~V~i~~f~g~~~e~~l~~~l 465 (509)
.+.+|+.+.+.+-.-.......+..+
T Consensus 280 l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 280 LIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp GGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred HhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 35678888887654433333433333
No 86
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.31 E-value=7.1e-05 Score=79.47 Aligned_cols=219 Identities=16% Similarity=0.119 Sum_probs=104.1
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccc---------------------eeeEEEecccccceEEE
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSET---------------------LVSLKVVGSAIQLKHLR 299 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~---------------------~~~l~i~~~~~~Lk~L~ 299 (509)
+..+++|+.|++.+..+.+ +...+..+ .|++|++.+|.. ...... ..+++|+.|+
T Consensus 278 ~~~l~~L~~L~l~~~~l~~--l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~ 353 (570)
T 2z63_A 278 FNCLTNVSSFSLVSVTIER--VKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLD 353 (570)
T ss_dssp TGGGTTCSEEEEESCEECS--CCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEE
T ss_pred hcCcCcccEEEecCccchh--hhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCcccccccc-ccCCCCCEEe
Confidence 4456677777777666542 22223344 566666655532 111111 2234555555
Q ss_pred EecccCccEEEE------ECCceeEEEEecCCc-cceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEee
Q 010478 300 ISTCYRLNEIKI------STPNLLSFKYFGPGQ-ELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDS 372 (509)
Q Consensus 300 l~~c~~l~~l~i------~aP~L~~L~~~g~~~-~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~ 372 (509)
+.++. +..+.. ..++|++|.+.++.- .....+.++++|+.+++....... ......+..+++|+.|+++.
T Consensus 354 l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l~~ 430 (570)
T 2z63_A 354 LSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ--MSEFSVFLSLRNLIYLDISH 430 (570)
T ss_dssp CCSSC-CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEES--CTTSCTTTTCTTCCEEECTT
T ss_pred CcCCc-cCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCcccc--ccchhhhhcCCCCCEEeCcC
Confidence 55443 222210 245566665555431 111224556666666555411100 00012234566777777764
Q ss_pred chhhhhccC--CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCcccc-Cc--cccCCccEE
Q 010478 373 CDELYAQFS--EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKV-PR--HSHQHLKLV 447 (509)
Q Consensus 373 ~~~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~-p~--c~~~~Lk~V 447 (509)
+. +....+ +..+++|++|+|..+.-. ...+...+..+++|+.|++... .+... |. ....+|+.+
T Consensus 431 n~-l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~p~~~~~l~~L~~L~l~~n-------~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 431 TH-TRVAFNGIFNGLSSLEVLKMAGNSFQ---ENFLPDIFTELRNLTFLDLSQC-------QLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp SC-CEECCTTTTTTCTTCCEEECTTCEEG---GGEECSCCTTCTTCCEEECTTS-------CCCEECTTTTTTCTTCCEE
T ss_pred Cc-ccccchhhhhcCCcCcEEECcCCcCc---cccchhhhhcccCCCEEECCCC-------ccccCChhhhhcccCCCEE
Confidence 32 111122 455667777777333111 0012234566777777776542 11111 21 235788999
Q ss_pred EEecccCCccHHHHHHHHHhcCccCCcEEEEecC
Q 010478 448 ELHGFLGRPIDLELAFYILENAMTLEKMVVNRTN 481 (509)
Q Consensus 448 ~i~~f~g~~~e~~l~~~lL~na~~Le~m~I~~~~ 481 (509)
.+.+-.-..- ....+.+.+.|+.+.+....
T Consensus 500 ~l~~n~l~~~----~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 500 NMASNQLKSV----PDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp ECCSSCCSCC----CTTTTTTCTTCCEEECCSSC
T ss_pred eCCCCcCCCC----CHHHhhcccCCcEEEecCCc
Confidence 8876322111 11134677899988887554
No 87
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.31 E-value=0.00055 Score=71.80 Aligned_cols=62 Identities=19% Similarity=0.161 Sum_probs=43.4
Q ss_pred cCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEe
Q 010478 360 SCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFD 424 (509)
Q Consensus 360 ~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~ 424 (509)
..+++|++|+++.+. +....+ ...+++|++|++..+. -.+...+...+..+++|+.|++...
T Consensus 321 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~--l~~l~~~~~~~~~l~~L~~L~Ls~N 384 (520)
T 2z7x_B 321 SKISPFLHLDFSNNL-LTDTVFENCGHLTELETLILQMNQ--LKELSKIAEMTTQMKSLQQLDISQN 384 (520)
T ss_dssp SSCCCCCEEECCSSC-CCTTTTTTCCCCSSCCEEECCSSC--CCBHHHHHHHHTTCTTCCEEECCSS
T ss_pred hhCCcccEEEeECCc-cChhhhhhhccCCCCCEEEccCCc--cCccccchHHHhhCCCCCEEECCCC
Confidence 578889999998443 322233 6778899999994432 2233456677889999999999764
No 88
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.25 E-value=2.5e-05 Score=85.11 Aligned_cols=37 Identities=14% Similarity=0.066 Sum_probs=19.0
Q ss_pred cCCccEEEEecccCCccHHHHHHHHHhcCccCCcEEEEec
Q 010478 441 HQHLKLVELHGFLGRPIDLELAFYILENAMTLEKMVVNRT 480 (509)
Q Consensus 441 ~~~Lk~V~i~~f~g~~~e~~l~~~lL~na~~Le~m~I~~~ 480 (509)
..+|+.+.+.+-.-..-.-.... ...+.|+.+.+...
T Consensus 583 l~~L~~L~L~~N~l~~~~~~~~~---~~~~~L~~l~l~~N 619 (680)
T 1ziw_A 583 QVSLKSLNLQKNLITSVEKKVFG---PAFRNLTELDMRFN 619 (680)
T ss_dssp CTTCCEEECTTSCCCBCCHHHHH---HHHTTCSEEECTTC
T ss_pred CCCCCEEECCCCcCCccChhHhc---ccccccCEEEccCC
Confidence 46788887766322211112111 13377887776543
No 89
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.23 E-value=6e-05 Score=72.22 Aligned_cols=62 Identities=21% Similarity=0.191 Sum_probs=38.1
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEE--EecccccceEEEEeccc
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLK--VVGSAIQLKHLRISTCY 304 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~--i~~~~~~Lk~L~l~~c~ 304 (509)
+..+++|+.|+|++..++.- -..++.+++.|++|+|.++.- ..+. +-..+++|+.|.+.++.
T Consensus 57 ~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~ 120 (270)
T 2o6q_A 57 FHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNKL-QALPIGVFDQLVNLAELRLDRNQ 120 (270)
T ss_dssp SSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSCC-CCCCTTTTTTCSSCCEEECCSSC
T ss_pred hcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCcC-CcCCHhHcccccCCCEEECCCCc
Confidence 56778889998887765421 122346788888888887742 2111 11234667777776654
No 90
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.22 E-value=2.2e-05 Score=75.44 Aligned_cols=123 Identities=15% Similarity=0.138 Sum_probs=57.9
Q ss_pred cCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEE--ecccccceEEEEecccCccEEEE----ECCceeE
Q 010478 245 KYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKV--VGSAIQLKHLRISTCYRLNEIKI----STPNLLS 318 (509)
Q Consensus 245 p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i--~~~~~~Lk~L~l~~c~~l~~l~i----~aP~L~~ 318 (509)
++|+.|+|++..+++-.- ..+.+++.|+.|++.++. ++.+.. -..+++|+.|++.++. +..+.. ..++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCCCCEECT-TTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCE
T ss_pred CCccEEECCCCcccccCH-hHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccE
Confidence 356677666555443211 123456677777776663 221110 1123566666666554 333221 2355666
Q ss_pred EEEecCCc--cceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEee
Q 010478 319 FKYFGPGQ--ELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDS 372 (509)
Q Consensus 319 L~~~g~~~--~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~ 372 (509)
|.+.+..- .....+.++++|+.+++....... ..+...+..+++|++|.++.
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~l~~~~~~l~~L~~L~Ls~ 158 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQS--FKLPEYFSNLTNLEHLDLSS 158 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC--CCCCGGGGGCTTCCEEECCS
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCccce--ecCchhhccCCCCCEEECCC
Confidence 66554431 011235556666666665421110 00122334566777777763
No 91
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.22 E-value=0.00039 Score=74.89 Aligned_cols=75 Identities=16% Similarity=0.024 Sum_probs=42.4
Q ss_pred CCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCccccCCccEEEEecccCCccHHHHHHH
Q 010478 385 LPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPRHSHQHLKLVELHGFLGRPIDLELAFY 464 (509)
Q Consensus 385 f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~c~~~~Lk~V~i~~f~g~~~e~~l~~~ 464 (509)
+++|++|+|..+.... +. ..+++|+.|++.. +.+..+|. ...+|+.+.+.+-.-. .+ --
T Consensus 220 ~~~L~~L~Ls~N~L~~-----lp---~~l~~L~~L~Ls~-------N~L~~lp~-~~~~L~~L~Ls~N~L~--~l---p~ 278 (622)
T 3g06_A 220 PSGLKELIVSGNRLTS-----LP---VLPSELKELMVSG-------NRLTSLPM-LPSGLLSLSVYRNQLT--RL---PE 278 (622)
T ss_dssp CTTCCEEECCSSCCSC-----CC---CCCTTCCEEECCS-------SCCSCCCC-CCTTCCEEECCSSCCC--SC---CG
T ss_pred CCCCCEEEccCCccCc-----CC---CCCCcCcEEECCC-------CCCCcCCc-ccccCcEEeCCCCCCC--cC---CH
Confidence 4667777764332111 11 4456777777655 23344555 5678888888764322 11 11
Q ss_pred HHhcCccCCcEEEEec
Q 010478 465 ILENAMTLEKMVVNRT 480 (509)
Q Consensus 465 lL~na~~Le~m~I~~~ 480 (509)
-+.+.+.|+.+.+...
T Consensus 279 ~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 279 SLIHLSSETTVNLEGN 294 (622)
T ss_dssp GGGGSCTTCEEECCSC
T ss_pred HHhhccccCEEEecCC
Confidence 2467788888888654
No 92
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.16 E-value=5e-05 Score=84.89 Aligned_cols=58 Identities=16% Similarity=0.170 Sum_probs=32.3
Q ss_pred CcCCcEEEEeeEEEChhhHHH--HHhCCccccceeeecccceeeEEEecccccceEEEEeccc
Q 010478 244 VKYLRSLRLFSVNVTGEILEF--ILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCY 304 (509)
Q Consensus 244 ~p~Lk~L~L~~v~~~~~~l~~--lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~ 304 (509)
+++|+.|+|++..+. .+.. .+.+++.|+.|+|+++.-. .+..-..+++|+.|.+.++.
T Consensus 547 l~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 547 GPKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQ 606 (876)
T ss_dssp TTTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSC
T ss_pred cCCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCc
Confidence 447777777776655 2322 4566777777777766422 22111233556666665554
No 93
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.11 E-value=8e-05 Score=73.45 Aligned_cols=171 Identities=16% Similarity=0.135 Sum_probs=101.7
Q ss_pred CcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeE-EEecccccceEEEEecccCccEEEEE-CCceeEEEE
Q 010478 244 VKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSL-KVVGSAIQLKHLRISTCYRLNEIKIS-TPNLLSFKY 321 (509)
Q Consensus 244 ~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l-~i~~~~~~Lk~L~l~~c~~l~~l~i~-aP~L~~L~~ 321 (509)
.+.|+.|+|++..+++-.- ..+.+++.|++|+|.++.-.... ..-..+++|+.|++.++. +..+... .++|++|.+
T Consensus 51 ~~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~~L~~L~l 128 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKD-GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMPKTLQELRV 128 (330)
T ss_dssp CTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCCTTCCEEEC
T ss_pred CCCCeEEECCCCcCCEeCh-hhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhcccccEEEC
Confidence 4789999999887664211 13578999999999988532110 111245899999999876 4433211 378999999
Q ss_pred ecCCcc--ceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeeccC
Q 010478 322 FGPGQE--LKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLN 399 (509)
Q Consensus 322 ~g~~~~--~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~~ 399 (509)
.+..-. ....+.++++|+.+++........+ .....+..+++|+.|.++.+. + ..++...+++|++|++..+...
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~l~~L~~L~l~~n~-l-~~l~~~~~~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSG-IENGAFQGMKKLSYIRIADTN-I-TTIPQGLPPSLTELHLDGNKIT 205 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG-BCTTGGGGCTTCCEEECCSSC-C-CSCCSSCCTTCSEEECTTSCCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccC-cChhhccCCCCcCEEECCCCc-c-ccCCccccccCCEEECCCCcCC
Confidence 877511 1123678899999998863221111 112334667888888887432 1 1223222367777777433211
Q ss_pred ccCHHHHHHHhhcCCCCcEEEEEE
Q 010478 400 RESLLGLASIMKACPFLQTLIVQF 423 (509)
Q Consensus 400 ~~~~~~l~~lL~~~P~Le~L~i~~ 423 (509)
... ...+..+++|+.|++..
T Consensus 206 ~~~----~~~~~~l~~L~~L~Ls~ 225 (330)
T 1xku_A 206 KVD----AASLKGLNNLAKLGLSF 225 (330)
T ss_dssp EEC----TGGGTTCTTCCEEECCS
T ss_pred ccC----HHHhcCCCCCCEEECCC
Confidence 111 22345667777777654
No 94
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.07 E-value=0.00031 Score=71.83 Aligned_cols=37 Identities=24% Similarity=0.509 Sum_probs=35.1
Q ss_pred ccccCCCCcHHHHHHHHcCCChhhHHHHHhhhhhhhh
Q 010478 110 VEDLMSLLPDDILINIISRLPLKEAAKTSVLSSRWKY 146 (509)
Q Consensus 110 ~~D~is~LPdeiL~~ILs~Lp~~d~~rts~lSrRWr~ 146 (509)
..|.++.||+|++.+||+||+.+|+++++.|||+|+.
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~ 51 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRI 51 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHH
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHh
Confidence 4588999999999999999999999999999999986
No 95
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.06 E-value=8.6e-05 Score=80.39 Aligned_cols=59 Identities=17% Similarity=0.153 Sum_probs=36.7
Q ss_pred CcCCcEEEEeeEEEChhhHHH--HHhCCccccceeeecccceeeEEEecccccceEEEEeccc
Q 010478 244 VKYLRSLRLFSVNVTGEILEF--ILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCY 304 (509)
Q Consensus 244 ~p~Lk~L~L~~v~~~~~~l~~--lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~ 304 (509)
+++|+.|+|++..++ .+.. .+.+++.|+.|++.++...+.+..-..+++|+.|.+.++.
T Consensus 304 l~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~ 364 (636)
T 4eco_A 304 GEKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ 364 (636)
T ss_dssp GGTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE
T ss_pred CCCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc
Confidence 378888888887776 3333 5677888888888877533222111123566666666554
No 96
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.04 E-value=0.00011 Score=71.36 Aligned_cols=165 Identities=16% Similarity=0.104 Sum_probs=89.8
Q ss_pred CCccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE---E-ECCc
Q 010478 240 ELSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK---I-STPN 315 (509)
Q Consensus 240 ~~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~---i-~aP~ 315 (509)
.+..+++|+.|+|++..++.-.. ...++.|+.|+|+++.--..-.....+++|+.|.+.++. +..+. + ..++
T Consensus 50 ~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~ 125 (290)
T 1p9a_G 50 TLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGE 125 (290)
T ss_dssp GGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTT
T ss_pred HhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCC
Confidence 36688999999999877654221 167999999999987532111112345788888888775 33322 1 2467
Q ss_pred eeEEEEecCCcc-c-eeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEE
Q 010478 316 LLSFKYFGPGQE-L-KLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHL 391 (509)
Q Consensus 316 L~~L~~~g~~~~-~-~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L 391 (509)
|+.|.+.+..-. . .-.+..+++|+.+++....- ......++..+++|+.|.|+.+. + ..+| .....+|++|
T Consensus 126 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l---~~l~~~~~~~l~~L~~L~L~~N~-l-~~ip~~~~~~~~L~~l 200 (290)
T 1p9a_G 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL---TELPAGLLNGLENLDTLLLQENS-L-YTIPKGFFGSHLLPFA 200 (290)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC---SCCCTTTTTTCTTCCEEECCSSC-C-CCCCTTTTTTCCCSEE
T ss_pred CCEEECCCCCCCccChhhcccccCCCEEECCCCcC---CccCHHHhcCcCCCCEEECCCCc-C-CccChhhcccccCCeE
Confidence 777777665410 1 11234556666666654211 11111233456677777776322 2 1222 3344566777
Q ss_pred EEEeeccC-ccCHHHHHHHhhcC
Q 010478 392 HLRVATLN-RESLLGLASIMKAC 413 (509)
Q Consensus 392 ~L~~~~~~-~~~~~~l~~lL~~~ 413 (509)
.|..+... ..+..++...++.-
T Consensus 201 ~L~~Np~~C~c~~~~l~~wl~~~ 223 (290)
T 1p9a_G 201 FLHGNPWLCNCEILYFRRWLQDN 223 (290)
T ss_dssp ECCSCCBCCSGGGHHHHHHHHHT
T ss_pred EeCCCCccCcCccHHHHHHHHhC
Confidence 76443211 23344455555543
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.03 E-value=0.0011 Score=60.08 Aligned_cols=100 Identities=17% Similarity=0.191 Sum_probs=50.5
Q ss_pred CceeEEEEecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhh-ccC-CCCCCcccEE
Q 010478 314 PNLLSFKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYA-QFS-EHELPNLTHL 391 (509)
Q Consensus 314 P~L~~L~~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~-~~~-~~~f~~Lk~L 391 (509)
++|++|.+.++.....-.+..+++|+.+++..... .......+..+++|+.|.++.+. +.. ... +..+++|++|
T Consensus 66 ~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l---~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L 141 (197)
T 4ezg_A 66 HNIKDLTINNIHATNYNPISGLSNLERLRIMGKDV---TSDKIPNLSGLTSLTLLDISHSA-HDDSILTKINTLPKVNSI 141 (197)
T ss_dssp TTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTC---BGGGSCCCTTCTTCCEEECCSSB-CBGGGHHHHTTCSSCCEE
T ss_pred CCCCEEEccCCCCCcchhhhcCCCCCEEEeECCcc---CcccChhhcCCCCCCEEEecCCc-cCcHhHHHHhhCCCCCEE
Confidence 34444444444311111345566677776665211 11111233567778888777432 211 111 5567777888
Q ss_pred EEEeec-cCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478 392 HLRVAT-LNRESLLGLASIMKACPFLQTLIVQF 423 (509)
Q Consensus 392 ~L~~~~-~~~~~~~~l~~lL~~~P~Le~L~i~~ 423 (509)
+|..+. ... . ..+..+|+|+.|++..
T Consensus 142 ~L~~n~~i~~--~----~~l~~l~~L~~L~l~~ 168 (197)
T 4ezg_A 142 DLSYNGAITD--I----MPLKTLPELKSLNIQF 168 (197)
T ss_dssp ECCSCTBCCC--C----GGGGGCSSCCEEECTT
T ss_pred EccCCCCccc--c----HhhcCCCCCCEEECCC
Confidence 774442 111 1 1466777777777754
No 98
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.02 E-value=4.6e-05 Score=76.85 Aligned_cols=159 Identities=14% Similarity=0.101 Sum_probs=81.2
Q ss_pred CcCCcEEEEeeEEEChhh---HHHHHhC-Cccccceeeeccccee--eEEEecccccceEEEEecccCccEEE-------
Q 010478 244 VKYLRSLRLFSVNVTGEI---LEFILHN-CPLLDQLSVVRSETLV--SLKVVGSAIQLKHLRISTCYRLNEIK------- 310 (509)
Q Consensus 244 ~p~Lk~L~L~~v~~~~~~---l~~lls~-CP~Le~L~L~~c~~~~--~l~i~~~~~~Lk~L~l~~c~~l~~l~------- 310 (509)
.++|+.|+|+++.+++.. +..++.. ++.|++|+|++|.--. ...+...+.+|+.|++.+|. +....
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHH
Confidence 356777777777666543 3333332 4577777777764211 00111223456666666554 11100
Q ss_pred --EECCceeEEEEecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhh---hccC--CC
Q 010478 311 --ISTPNLLSFKYFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELY---AQFS--EH 383 (509)
Q Consensus 311 --i~aP~L~~L~~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~---~~~~--~~ 383 (509)
-..++|++|.++++. ..+.....+...+...++|++|+|+.+.--. ..+. +.
T Consensus 150 L~~~~~~L~~L~Ls~n~---------------------l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~ 208 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNP---------------------LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD 208 (372)
T ss_dssp HHSTTCCCCEEECCSSC---------------------CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG
T ss_pred HHhcCCccceeeCCCCC---------------------CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh
Confidence 012344444444433 0000111222334567788888887443111 1111 44
Q ss_pred CCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEe
Q 010478 384 ELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFD 424 (509)
Q Consensus 384 ~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~ 424 (509)
..++|++|+|..+.........+...++.+|.|+.|++...
T Consensus 209 ~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 55688888885553333334456667778889998888663
No 99
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.00 E-value=0.0001 Score=70.65 Aligned_cols=174 Identities=15% Similarity=0.105 Sum_probs=92.5
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEE--EecccccceEEEEecccCccEE---EE-ECC
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLK--VVGSAIQLKHLRISTCYRLNEI---KI-STP 314 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~--i~~~~~~Lk~L~l~~c~~l~~l---~i-~aP 314 (509)
+..+++|+.|+|++..+.+-. ...+.+++.|+.|+|.++.- +.+. .-..+++|+.|.+.++. +..+ .+ ..+
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 124 (276)
T 2z62_A 48 FFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLK 124 (276)
T ss_dssp TTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCT
T ss_pred hccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCcc-CccChhhhcCCccccEEECCCCC-ccccCchhcccCC
Confidence 556788888888876654311 11246688888888887752 2111 11234788888887765 2211 12 357
Q ss_pred ceeEEEEecCCc-c--ceeeecCCCCceEEEEEeccchhh-hhhhcccccCCCCcc-EEEEeechhhhhccC-CCCCCcc
Q 010478 315 NLLSFKYFGPGQ-E--LKLHIENAPQLVDISFRGVMLTRV-RNVVGPITSCFPQLK-TLELDSCDELYAQFS-EHELPNL 388 (509)
Q Consensus 315 ~L~~L~~~g~~~-~--~~~~~~~~~~L~~l~i~~~~~~~~-~~~~~~l~~~l~~L~-~L~L~~~~~~~~~~~-~~~f~~L 388 (509)
+|++|.+.+..- . .+-.+.++++|+.+++....-... ...+.. +..++.+. .|.++... +....+ .....+|
T Consensus 125 ~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~l~l~L~ls~n~-l~~~~~~~~~~~~L 202 (276)
T 2z62_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRL 202 (276)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH-HHTCTTCCEEEECCSSC-CCEECTTSSCSCCE
T ss_pred CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh-hhhccccceeeecCCCc-ccccCccccCCCcc
Confidence 888888876651 1 233567788999998876321111 111111 12233333 66665322 211111 2233478
Q ss_pred cEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478 389 THLHLRVATLNRESLLGLASIMKACPFLQTLIVQF 423 (509)
Q Consensus 389 k~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~ 423 (509)
++|+|..+.-.... ..++..+++|+.|++..
T Consensus 203 ~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 203 KELALDTNQLKSVP----DGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp EEEECCSSCCSCCC----TTTTTTCCSCCEEECCS
T ss_pred cEEECCCCceeecC----HhHhcccccccEEEccC
Confidence 88888543222111 23456677777776654
No 100
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.99 E-value=0.00017 Score=73.66 Aligned_cols=41 Identities=29% Similarity=0.531 Sum_probs=37.4
Q ss_pred ccccCCCCcHH----HHHHHHcCCChhhHHHHHhhhhhhhh------hccc
Q 010478 110 VEDLMSLLPDD----ILINIISRLPLKEAAKTSVLSSRWKY------LWTF 150 (509)
Q Consensus 110 ~~D~is~LPde----iL~~ILs~Lp~~d~~rts~lSrRWr~------lw~~ 150 (509)
..|.|+.||+| |+.+||++|+.++.++++.|||+|++ +|+.
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~ 57 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKK 57 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 45889999999 99999999999999999999999995 5774
No 101
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=96.96 E-value=0.00027 Score=75.11 Aligned_cols=150 Identities=13% Similarity=0.061 Sum_probs=75.8
Q ss_pred ccCcCCcEEEEeeEEEChhhHHHHHh--CCccccceeeecccceeeE---------------EEe---c-----------
Q 010478 242 SGVKYLRSLRLFSVNVTGEILEFILH--NCPLLDQLSVVRSETLVSL---------------KVV---G----------- 290 (509)
Q Consensus 242 ~~~p~Lk~L~L~~v~~~~~~l~~lls--~CP~Le~L~L~~c~~~~~l---------------~i~---~----------- 290 (509)
..++.|+.|.|.+..+.+..+..+.. ..+.|++|++.+|...+.+ .+. .
T Consensus 246 ~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~ 325 (562)
T 3a79_B 246 TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY 325 (562)
T ss_dssp HSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHH
T ss_pred hccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhh
Confidence 45678888888888888766554433 3558999999887522110 000 0
Q ss_pred ---ccccceEEEEecccCccEEE--EECCceeEEEEecCCc--cceeeecCCCCceEEEEEeccchhhhhhhcccccCCC
Q 010478 291 ---SAIQLKHLRISTCYRLNEIK--ISTPNLLSFKYFGPGQ--ELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFP 363 (509)
Q Consensus 291 ---~~~~Lk~L~l~~c~~l~~l~--i~aP~L~~L~~~g~~~--~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~ 363 (509)
...+|+.|.+.++. +..+. -..++|++|.+.+..- ..+-.+.++++|+.+++....-.... .+...+..++
T Consensus 326 ~~~~~~~L~~L~l~~n~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~~~l~ 403 (562)
T 3a79_B 326 SVFAEMNIKMLSISDTP-FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF-KVALMTKNMS 403 (562)
T ss_dssp HHHHTCCCSEEEEESSC-CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT-HHHHTTTTCT
T ss_pred hhhccCcceEEEccCCC-cccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc-cchhhhcCCC
Confidence 00235555555443 11111 1346677777766541 11223456677777777652211110 0112234566
Q ss_pred CccEEEEeechhhhhccC---CCCCCcccEEEEE
Q 010478 364 QLKTLELDSCDELYAQFS---EHELPNLTHLHLR 394 (509)
Q Consensus 364 ~L~~L~L~~~~~~~~~~~---~~~f~~Lk~L~L~ 394 (509)
+|+.|+++.+. +...++ +..+++|++|++.
T Consensus 404 ~L~~L~l~~N~-l~~~~~~~~~~~l~~L~~L~l~ 436 (562)
T 3a79_B 404 SLETLDVSLNS-LNSHAYDRTCAWAESILVLNLS 436 (562)
T ss_dssp TCCEEECTTSC-CBSCCSSCCCCCCTTCCEEECC
T ss_pred CCCEEECCCCc-CCCccChhhhcCcccCCEEECC
Confidence 67777766322 111122 3344555555553
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=96.94 E-value=0.00028 Score=67.35 Aligned_cols=79 Identities=11% Similarity=0.108 Sum_probs=38.3
Q ss_pred ccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE-EECCceeEEE
Q 010478 242 SGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK-ISTPNLLSFK 320 (509)
Q Consensus 242 ~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~-i~aP~L~~L~ 320 (509)
..+++|+.|++.+..+++-. -+..++.|+.|+|.++.- +.+.--..+++|+.|.+.++. +..+. +..++|+.|.
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~L~~N~i-~~~~~l~~l~~L~~L~L~~N~-l~~l~~~~~~~L~~L~ 112 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQI-SDLSPLKDLTKLEELSVNRNR-LKNLNGIPSACLSRLF 112 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCT---TGGGCTTCCEEECCSSCC-CCCGGGTTCSSCCEEECCSSC-CSCCTTCCCSSCCEEE
T ss_pred hhcCcCcEEECcCCCcccch---HHhhCCCCCEEECCCCcc-CCChhhccCCCCCEEECCCCc-cCCcCccccCcccEEE
Confidence 34566677776665554321 245566777777766532 111001234566666666554 11110 0015555555
Q ss_pred EecCC
Q 010478 321 YFGPG 325 (509)
Q Consensus 321 ~~g~~ 325 (509)
+.+..
T Consensus 113 L~~N~ 117 (263)
T 1xeu_A 113 LDNNE 117 (263)
T ss_dssp CCSSC
T ss_pred ccCCc
Confidence 55543
No 103
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=96.90 E-value=2.1e-05 Score=67.96 Aligned_cols=61 Identities=21% Similarity=0.152 Sum_probs=35.9
Q ss_pred cCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEeccc
Q 010478 243 GVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCY 304 (509)
Q Consensus 243 ~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~ 304 (509)
.+++|+.|++++..+++..+...+..++.|+.|++.+|. ++.+..-..+++|+.|++.++.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~ 75 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIANLPKLNKLKKLELSDNR 75 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCCTTCCCCTTCCEEECCSSC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCchhhhcCCCCCEEECCCCc
Confidence 446777777777776644444455667777777777764 2222111223566666666554
No 104
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=96.88 E-value=9.3e-05 Score=73.09 Aligned_cols=81 Identities=17% Similarity=0.175 Sum_probs=38.6
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE----EECCce
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK----ISTPNL 316 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~----i~aP~L 316 (509)
+..+++|+.|+|++..+++-. ...+.+++.|++|++.++.- +.+.... .++|++|.+.++. +..+. -..++|
T Consensus 74 ~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l-~~l~~~~-~~~L~~L~l~~n~-i~~~~~~~~~~l~~L 149 (332)
T 2ft3_A 74 FKGLQHLYALVLVNNKISKIH-EKAFSPLRKLQKLYISKNHL-VEIPPNL-PSSLVELRIHDNR-IRKVPKGVFSGLRNM 149 (332)
T ss_dssp TTTCTTCCEEECCSSCCCEEC-GGGSTTCTTCCEEECCSSCC-CSCCSSC-CTTCCEEECCSSC-CCCCCSGGGSSCSSC
T ss_pred hhCCCCCcEEECCCCccCccC-HhHhhCcCCCCEEECCCCcC-CccCccc-cccCCEEECCCCc-cCccCHhHhCCCccC
Confidence 445666666666655443211 11235566667666666532 1111111 1456666666554 22221 124556
Q ss_pred eEEEEecCC
Q 010478 317 LSFKYFGPG 325 (509)
Q Consensus 317 ~~L~~~g~~ 325 (509)
+.|.+.+..
T Consensus 150 ~~L~l~~n~ 158 (332)
T 2ft3_A 150 NCIEMGGNP 158 (332)
T ss_dssp CEEECCSCC
T ss_pred CEEECCCCc
Confidence 666655443
No 105
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=96.87 E-value=0.00077 Score=71.59 Aligned_cols=81 Identities=17% Similarity=0.148 Sum_probs=41.5
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEE-----ECCc
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKI-----STPN 315 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i-----~aP~ 315 (509)
+..+++|++|+|++..+++-. ...+.+++.|++|+|+++.- +.+.-. .+++|++|++.++. +..+.+ ..++
T Consensus 72 ~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l-~~lp~~-~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~ 147 (562)
T 3a79_B 72 ISFLSELRVLRLSHNRIRSLD-FHVFLFNQDLEYLDVSHNRL-QNISCC-PMASLRHLDLSFND-FDVLPVCKEFGNLTK 147 (562)
T ss_dssp TTTCTTCCEEECCSCCCCEEC-TTTTTTCTTCCEEECTTSCC-CEECSC-CCTTCSEEECCSSC-CSBCCCCGGGGGCTT
T ss_pred hccCCCccEEECCCCCCCcCC-HHHhCCCCCCCEEECCCCcC-CccCcc-ccccCCEEECCCCC-ccccCchHhhcccCc
Confidence 455666777777665544311 11245566677777766542 222111 34666666666654 332221 2456
Q ss_pred eeEEEEecCC
Q 010478 316 LLSFKYFGPG 325 (509)
Q Consensus 316 L~~L~~~g~~ 325 (509)
|++|.+++..
T Consensus 148 L~~L~L~~n~ 157 (562)
T 3a79_B 148 LTFLGLSAAK 157 (562)
T ss_dssp CCEEEEECSB
T ss_pred ccEEecCCCc
Confidence 6666666543
No 106
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=96.77 E-value=0.00041 Score=75.43 Aligned_cols=176 Identities=16% Similarity=0.087 Sum_probs=84.8
Q ss_pred ccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeE-EEecccccceEEEEecccC--ccEEE---EECCc
Q 010478 242 SGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSL-KVVGSAIQLKHLRISTCYR--LNEIK---ISTPN 315 (509)
Q Consensus 242 ~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l-~i~~~~~~Lk~L~l~~c~~--l~~l~---i~aP~ 315 (509)
..+++|+.|+|++..+.+..-...+.+++.|++|++.++...... ..-..+++|+.|.+.++.. +..+. -..++
T Consensus 402 ~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~ 481 (680)
T 1ziw_A 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481 (680)
T ss_dssp TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTT
T ss_pred hCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCC
Confidence 345556666665544332111122345666666666655421100 0001235666666655431 00000 12467
Q ss_pred eeEEEEecCCc-c-ceeeecCCCCceEEEEEeccchhhh-hh----hcccccCCCCccEEEEeechhhhhccC---CCCC
Q 010478 316 LLSFKYFGPGQ-E-LKLHIENAPQLVDISFRGVMLTRVR-NV----VGPITSCFPQLKTLELDSCDELYAQFS---EHEL 385 (509)
Q Consensus 316 L~~L~~~g~~~-~-~~~~~~~~~~L~~l~i~~~~~~~~~-~~----~~~l~~~l~~L~~L~L~~~~~~~~~~~---~~~f 385 (509)
|+.|.+++..- . .+-.+.++++|+.+++......... .. ....+..+++|+.|+|+.+. +. .++ +..+
T Consensus 482 L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~-~i~~~~~~~l 559 (680)
T 1ziw_A 482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FD-EIPVEVFKDL 559 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CC-CCCTTTTTTC
T ss_pred CCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC-CC-CCCHHHcccc
Confidence 88887776541 0 1123566788888887763211110 00 01124667788888887432 21 222 4566
Q ss_pred CcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478 386 PNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQF 423 (509)
Q Consensus 386 ~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~ 423 (509)
++|++|+|..+.-.... ...+..+++|+.|++..
T Consensus 560 ~~L~~L~Ls~N~l~~l~----~~~~~~l~~L~~L~L~~ 593 (680)
T 1ziw_A 560 FELKIIDLGLNNLNTLP----ASVFNNQVSLKSLNLQK 593 (680)
T ss_dssp TTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECTT
T ss_pred cCcceeECCCCCCCcCC----HhHhCCCCCCCEEECCC
Confidence 77777777443221111 22445667777777755
No 107
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.77 E-value=0.0013 Score=68.10 Aligned_cols=154 Identities=19% Similarity=0.149 Sum_probs=77.8
Q ss_pred cCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEE-E-ECCceeEEEEe
Q 010478 245 KYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK-I-STPNLLSFKYF 322 (509)
Q Consensus 245 p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~-i-~aP~L~~L~~~ 322 (509)
++|++|+|++..+++ +.. +.+++.|++|++.++.- +. +.....+|+.|++.++. +..+. + ..++|+.|.+.
T Consensus 131 ~~L~~L~L~~n~l~~--lp~-~~~l~~L~~L~l~~N~l-~~--lp~~~~~L~~L~L~~n~-l~~l~~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK--LPE-LQNSSFLKIIDVDNNSL-KK--LPDLPPSLEFIAAGNNQ-LEELPELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCC-SC--CCCCCTTCCEEECCSSC-CSSCCCCTTCTTCCEEECC
T ss_pred CCCCEEECcCCCCCC--Ccc-cCCCCCCCEEECCCCcC-cc--cCCCcccccEEECcCCc-CCcCccccCCCCCCEEECC
Confidence 577777777666553 222 56677777777777642 22 22222577777777664 22221 1 24667777666
Q ss_pred cCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeeccCccC
Q 010478 323 GPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNRES 402 (509)
Q Consensus 323 g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~~~~~ 402 (509)
+.. ..-.....++|+.+++....... +.. +..+++|+.|.++.+. + ..++ ..+++|++|++..+.-..
T Consensus 204 ~N~--l~~l~~~~~~L~~L~l~~n~l~~----lp~-~~~l~~L~~L~l~~N~-l-~~l~-~~~~~L~~L~l~~N~l~~-- 271 (454)
T 1jl5_A 204 NNS--LKKLPDLPLSLESIVAGNNILEE----LPE-LQNLPFLTTIYADNNL-L-KTLP-DLPPSLEALNVRDNYLTD-- 271 (454)
T ss_dssp SSC--CSSCCCCCTTCCEEECCSSCCSS----CCC-CTTCTTCCEEECCSSC-C-SSCC-SCCTTCCEEECCSSCCSC--
T ss_pred CCc--CCcCCCCcCcccEEECcCCcCCc----ccc-cCCCCCCCEEECCCCc-C-Cccc-ccccccCEEECCCCcccc--
Confidence 654 11111122456666665521111 111 3456777777776322 1 1122 223677777774432111
Q ss_pred HHHHHHHhhcCCCCcEEEEEE
Q 010478 403 LLGLASIMKACPFLQTLIVQF 423 (509)
Q Consensus 403 ~~~l~~lL~~~P~Le~L~i~~ 423 (509)
+-...++|+.|++..
T Consensus 272 ------l~~~~~~L~~L~ls~ 286 (454)
T 1jl5_A 272 ------LPELPQSLTFLDVSE 286 (454)
T ss_dssp ------CCCCCTTCCEEECCS
T ss_pred ------cCcccCcCCEEECcC
Confidence 111236777777754
No 108
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.62 E-value=0.0025 Score=63.76 Aligned_cols=35 Identities=11% Similarity=0.072 Sum_probs=19.7
Q ss_pred cCCcEEEEeeEEEC-h---hhHHHHH---hCCccccceeeec
Q 010478 245 KYLRSLRLFSVNVT-G---EILEFIL---HNCPLLDQLSVVR 279 (509)
Q Consensus 245 p~Lk~L~L~~v~~~-~---~~l~~ll---s~CP~Le~L~L~~ 279 (509)
++++.|.+....++ + ..+..+. ...|+|+.|.|..
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~ 148 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGD 148 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECC
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecC
Confidence 34555555544333 1 2344443 3478999998864
No 109
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.59 E-value=0.0013 Score=68.06 Aligned_cols=11 Identities=27% Similarity=0.338 Sum_probs=6.7
Q ss_pred CCCCcEEEEEE
Q 010478 413 CPFLQTLIVQF 423 (509)
Q Consensus 413 ~P~Le~L~i~~ 423 (509)
.++|+.|++..
T Consensus 356 l~~L~~L~L~~ 366 (454)
T 1jl5_A 356 PQNLKQLHVEY 366 (454)
T ss_dssp CTTCCEEECCS
T ss_pred hhhccEEECCC
Confidence 45666666654
No 110
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=96.58 E-value=0.00026 Score=62.97 Aligned_cols=60 Identities=17% Similarity=0.117 Sum_probs=34.3
Q ss_pred ccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEeccc
Q 010478 242 SGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCY 304 (509)
Q Consensus 242 ~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~ 304 (509)
..+++|+.|+|++..++. +..+...+|.|+.|+++++. ++.+..-..+++|+.|.+.++.
T Consensus 16 ~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~ 75 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNR 75 (176)
T ss_dssp ECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSC
T ss_pred CCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCC-CCcccccccCCCCCEEECCCCc
Confidence 345777788877766653 22233345578888887764 2222222234566666666654
No 111
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=96.57 E-value=0.00019 Score=70.80 Aligned_cols=99 Identities=17% Similarity=0.130 Sum_probs=66.5
Q ss_pred CcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeE--EEecccccceEEEEecccCccEEEEE-CCceeEEE
Q 010478 244 VKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSL--KVVGSAIQLKHLRISTCYRLNEIKIS-TPNLLSFK 320 (509)
Q Consensus 244 ~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l--~i~~~~~~Lk~L~l~~c~~l~~l~i~-aP~L~~L~ 320 (509)
+++|+.|+|++..+.+-. ...+.+++.|++|+|.++.- +.+ ..-..+++|+.|++.++. +..+... .++|++|.
T Consensus 53 ~~~l~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~L~~L~ 129 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNNKI-SKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLPSSLVELR 129 (332)
T ss_dssp CTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCC-CEECGGGSTTCTTCCEEECCSSC-CCSCCSSCCTTCCEEE
T ss_pred CCCCeEEECCCCcCCccC-HhHhhCCCCCcEEECCCCcc-CccCHhHhhCcCCCCEEECCCCc-CCccCccccccCCEEE
Confidence 478999999987655321 12357899999999999853 222 111345899999999875 3332211 27899999
Q ss_pred EecCCc-cc-eeeecCCCCceEEEEEe
Q 010478 321 YFGPGQ-EL-KLHIENAPQLVDISFRG 345 (509)
Q Consensus 321 ~~g~~~-~~-~~~~~~~~~L~~l~i~~ 345 (509)
+.+..- .. .-.+.++++|+.+++..
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~ 156 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGG 156 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCS
T ss_pred CCCCccCccCHhHhCCCccCCEEECCC
Confidence 987651 11 12367788999998876
No 112
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=96.55 E-value=0.00046 Score=65.16 Aligned_cols=145 Identities=15% Similarity=0.106 Sum_probs=64.7
Q ss_pred cCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEE--ecccccceEEEEecccCccEEE----EECCceeE
Q 010478 245 KYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKV--VGSAIQLKHLRISTCYRLNEIK----ISTPNLLS 318 (509)
Q Consensus 245 p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i--~~~~~~Lk~L~l~~c~~l~~l~----i~aP~L~~ 318 (509)
++|+.|+|.+..+.+-. ...+.+++.|+.|+|.++.- +.+.. -..+++|+.|.+.++. +..+. -..++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 111 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDK 111 (251)
T ss_dssp TTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCCEEEccCCCcCccC-HhHhcCcccCCEEECCCCcC-CccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCE
Confidence 45666666655544311 11244566666666666532 11100 0123556666665543 22211 02345555
Q ss_pred EEEecCCcc-c-eeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEE
Q 010478 319 FKYFGPGQE-L-KLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLR 394 (509)
Q Consensus 319 L~~~g~~~~-~-~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~ 394 (509)
|.+.+..-. . .-.+..+++|+.+++....-. ......+..+++|+.|+|+.+. +....+ +..+++|++|+|.
T Consensus 112 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ---SIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLF 187 (251)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECC
T ss_pred EEcCCCcCCCcChhHhccCCcccEEECcCCcCC---ccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEee
Confidence 555544310 0 111344556666665542111 1111223455667777766322 211111 4455666677664
Q ss_pred ee
Q 010478 395 VA 396 (509)
Q Consensus 395 ~~ 396 (509)
.+
T Consensus 188 ~N 189 (251)
T 3m19_A 188 GN 189 (251)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 113
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=96.52 E-value=0.00088 Score=71.67 Aligned_cols=124 Identities=17% Similarity=0.150 Sum_probs=70.5
Q ss_pred cCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeeccCccCHHHHHHHh
Q 010478 333 ENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATLNRESLLGLASIM 410 (509)
Q Consensus 333 ~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL 410 (509)
...++++.+++.... .........+..+++|+.|+|+.+ .+....+ +..+++|++|+|..+.-.... ...+
T Consensus 466 ~~~~~L~~L~Ls~N~--~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~----~~~~ 538 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNS--FQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLD----TFPY 538 (635)
T ss_dssp TTCTTCCEEECTTCE--EGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCBCC----CGGG
T ss_pred ccchhhhhhhhhhcc--cccccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCCcCCCCC----hhHH
Confidence 345566666654311 111222344567788888888744 2322223 567788888888443221111 2235
Q ss_pred hcCCCCcEEEEEEeecCCccCCccccC-c---cccCCccEEEEec--ccCCccHHHHHHHHHhcCc
Q 010478 411 KACPFLQTLIVQFDYNGYKVGRRRKVP-R---HSHQHLKLVELHG--FLGRPIDLELAFYILENAM 470 (509)
Q Consensus 411 ~~~P~Le~L~i~~~~~~~~~~~~~~~p-~---c~~~~Lk~V~i~~--f~g~~~e~~l~~~lL~na~ 470 (509)
..+++|+.|+++.. .+..++ . ....+|+.+.+.| |..+..-..|+.++-++..
T Consensus 539 ~~l~~L~~L~Ls~N-------~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~ 597 (635)
T 4g8a_A 539 KCLNSLQVLDYSLN-------HIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ 597 (635)
T ss_dssp TTCTTCCEEECTTS-------CCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTT
T ss_pred hCCCCCCEEECCCC-------cCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCC
Confidence 67888888888652 222221 1 1236899999987 6666666677777755443
No 114
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=96.27 E-value=0.0059 Score=57.36 Aligned_cols=127 Identities=22% Similarity=0.263 Sum_probs=69.8
Q ss_pred ecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeeccCccCHHHHHHH
Q 010478 332 IENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATLNRESLLGLASI 409 (509)
Q Consensus 332 ~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~l 409 (509)
+.++++|+.+++....- .......+..+++|++|.|+.+ .+....+ +..+++|++|+|..+.-.... ...
T Consensus 79 ~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~ 150 (251)
T 3m19_A 79 FDDLTELGTLGLANNQL---ASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIP----AGA 150 (251)
T ss_dssp TTTCTTCCEEECTTSCC---CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC----TTT
T ss_pred hccCCcCCEEECCCCcc---cccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCccC----HHH
Confidence 34566666666654211 1111233466788888888743 2222222 456788888888554322111 124
Q ss_pred hhcCCCCcEEEEEEeecCCccCCccccCc---cccCCccEEEEec--ccCCccHH-HHHHHHHhcCccCC
Q 010478 410 MKACPFLQTLIVQFDYNGYKVGRRRKVPR---HSHQHLKLVELHG--FLGRPIDL-ELAFYILENAMTLE 473 (509)
Q Consensus 410 L~~~P~Le~L~i~~~~~~~~~~~~~~~p~---c~~~~Lk~V~i~~--f~g~~~e~-~l~~~lL~na~~Le 473 (509)
+..+++|+.|++... .+..++. ....+|+.+.+.| +.+...++ .+..++.++...+.
T Consensus 151 ~~~l~~L~~L~L~~N-------~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~ 213 (251)
T 3m19_A 151 FDKLTNLQTLSLSTN-------QLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVK 213 (251)
T ss_dssp TTTCTTCCEEECCSS-------CCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBC
T ss_pred cCcCcCCCEEECCCC-------cCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhccccee
Confidence 567788998888763 2222221 1346788888877 44552334 45556655555443
No 115
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.17 E-value=0.0018 Score=64.26 Aligned_cols=79 Identities=15% Similarity=0.173 Sum_probs=33.3
Q ss_pred cCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEE--ecccccceEEEEecccCccEEE----EECCceeE
Q 010478 245 KYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKV--VGSAIQLKHLRISTCYRLNEIK----ISTPNLLS 318 (509)
Q Consensus 245 p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i--~~~~~~Lk~L~l~~c~~l~~l~----i~aP~L~~ 318 (509)
++|++|+|++-.++.-. ...++++++|++|+|+++...+.+.. -..+++|+.+.+.++..+..+. -..++|++
T Consensus 30 ~~l~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESCCCSEEC-TTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccCCcCCCcC-HHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 35555555554432100 01234555566666655543222110 0122444444444444444332 12355555
Q ss_pred EEEecC
Q 010478 319 FKYFGP 324 (509)
Q Consensus 319 L~~~g~ 324 (509)
|.+.+.
T Consensus 109 L~l~~n 114 (350)
T 4ay9_X 109 LLISNT 114 (350)
T ss_dssp EEEEEE
T ss_pred cccccc
Confidence 555544
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=96.16 E-value=0.0012 Score=62.92 Aligned_cols=125 Identities=17% Similarity=0.174 Sum_probs=74.7
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEECCceeEEE
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFK 320 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~ 320 (509)
+..+++|+.|+|++..+++-.- +.+++.|+.|++.++.--..-.+.. ++|+.|.+.++. +..+.
T Consensus 59 l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~-l~~~~---------- 122 (263)
T 1xeu_A 59 MQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNE-LRDTD---------- 122 (263)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSC-CSBSG----------
T ss_pred HhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCc-cCCCh----------
Confidence 5678999999999888765322 7889999999999985322111222 789999999885 33221
Q ss_pred EecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeec
Q 010478 321 YFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVAT 397 (509)
Q Consensus 321 ~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~ 397 (509)
.+..+++|+.+++....-... ..+..+++|+.|.++.+. +...-....+++|++|++..+.
T Consensus 123 ----------~l~~l~~L~~L~Ls~N~i~~~-----~~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 123 ----------SLIHLKNLEILSIRNNKLKSI-----VMLGFLSKLEVLDLHGNE-ITNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp ----------GGTTCTTCCEEECTTSCCCBC-----GGGGGCTTCCEEECTTSC-CCBCTTSTTCCCCCEEEEEEEE
T ss_pred ----------hhcCcccccEEECCCCcCCCC-----hHHccCCCCCEEECCCCc-CcchHHhccCCCCCEEeCCCCc
Confidence 123344444444443111111 123456777887776322 2111115667788888886654
No 117
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=95.96 E-value=0.0048 Score=65.88 Aligned_cols=57 Identities=18% Similarity=0.152 Sum_probs=31.7
Q ss_pred CCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEE--ecccccceEEEEeccc
Q 010478 246 YLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKV--VGSAIQLKHLRISTCY 304 (509)
Q Consensus 246 ~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i--~~~~~~Lk~L~l~~c~ 304 (509)
++++|+|++-.++.-. ..-+++++.|+.|+|++|. ++.+.- -..+++|++|++.++.
T Consensus 53 ~~~~LdLs~N~i~~l~-~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp TCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC
T ss_pred CCCEEEeeCCCCCCCC-HHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCc
Confidence 6888888765443210 1124668888888888774 222211 0234566666666654
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=95.94 E-value=0.0044 Score=54.22 Aligned_cols=130 Identities=15% Similarity=0.144 Sum_probs=73.9
Q ss_pred Cccccceeeecccce-eeE-EEecccccceEEEEecccCccEEEEECCceeEEEEecCCccceeeecCCCCceEEEEEec
Q 010478 269 CPLLDQLSVVRSETL-VSL-KVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYFGPGQELKLHIENAPQLVDISFRGV 346 (509)
Q Consensus 269 CP~Le~L~L~~c~~~-~~l-~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~~~g~~~~~~~~~~~~~~L~~l~i~~~ 346 (509)
.+.|++|++.+|.-. ..+ ..-..+++|+.|.+.+|. +..+ -.+..+++|+.+++...
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~--------------------~~~~~l~~L~~L~Ls~N 81 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV--------------------SNLPKLPKLKKLELSEN 81 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC--------------------SSCCCCSSCCEEEEESC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh--------------------hhhccCCCCCEEECcCC
Confidence 577999999888632 121 111334667777777665 2222 12344555666666542
Q ss_pred cchhhhhhhcccccCCCCccEEEEeechhhhh--ccC-CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478 347 MLTRVRNVVGPITSCFPQLKTLELDSCDELYA--QFS-EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQF 423 (509)
Q Consensus 347 ~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~--~~~-~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~ 423 (509)
.-. ..+..+...+++|+.|.++.+. +.. ... +..+++|++|++..+...... ......+..+|+|+.|++..
T Consensus 82 ~l~---~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 82 RIF---GGLDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLN-DYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp CCC---SCCCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTST-THHHHHHTTCSSCCEETTEE
T ss_pred cCc---hHHHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchH-HHHHHHHHhCccCcEecCCC
Confidence 111 1122334457889999998542 311 112 667889999998554322111 11234788899999998877
Q ss_pred e
Q 010478 424 D 424 (509)
Q Consensus 424 ~ 424 (509)
.
T Consensus 157 n 157 (168)
T 2ell_A 157 R 157 (168)
T ss_dssp T
T ss_pred C
Confidence 4
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=95.86 E-value=0.0015 Score=60.40 Aligned_cols=144 Identities=15% Similarity=0.156 Sum_probs=68.3
Q ss_pred cCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEE--ecccccceEEEEecccCccEEEEECCceeEEEEe
Q 010478 245 KYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKV--VGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYF 322 (509)
Q Consensus 245 p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i--~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~~~ 322 (509)
+.++.|+|++..++.-.-...+..++.|+.|+|.++. ++.+.- -..+++|+.|++.++. +..+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~------------- 96 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNR-LENV------------- 96 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCCC-------------
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCc-cCcc-------------
Confidence 4567777766554432111224567777777776654 221110 0122445555544433 1111
Q ss_pred cCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeecc-C
Q 010478 323 GPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATL-N 399 (509)
Q Consensus 323 g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~-~ 399 (509)
..-.+.++++|+.+++....- .......+..+++|+.|.|+.+ .+....+ +..+++|++|+|..+.. .
T Consensus 97 -----~~~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 97 -----QHKMFKGLESLKTLMLRSNRI---TCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp -----CGGGGTTCSSCCEEECTTSCC---CCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred -----CHhHhcCCcCCCEEECCCCcC---CeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 011234455555555544111 1111123356777888888732 2222222 56677888888855432 2
Q ss_pred ccCHHHHHHHhhc
Q 010478 400 RESLLGLASIMKA 412 (509)
Q Consensus 400 ~~~~~~l~~lL~~ 412 (509)
.....++...++.
T Consensus 168 ~c~l~~l~~~~~~ 180 (220)
T 2v70_A 168 NCYLAWLGEWLRK 180 (220)
T ss_dssp SGGGHHHHHHHHH
T ss_pred CCchHHHHHHHHh
Confidence 3444556555553
No 120
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=95.72 E-value=0.0036 Score=55.37 Aligned_cols=130 Identities=13% Similarity=0.108 Sum_probs=69.5
Q ss_pred CCccccceeeecccceeeE-EEecccccceEEEEecccCccEEEEECCceeEEEEecCCccceeeecCCCCceEEEEEec
Q 010478 268 NCPLLDQLSVVRSETLVSL-KVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYFGPGQELKLHIENAPQLVDISFRGV 346 (509)
Q Consensus 268 ~CP~Le~L~L~~c~~~~~l-~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~~~g~~~~~~~~~~~~~~L~~l~i~~~ 346 (509)
.++.|++|.+.++.- +.+ .+....++|+.|++.++. +..+. .+..+++|+.+++...
T Consensus 17 ~~~~L~~L~l~~n~l-~~i~~~~~~~~~L~~L~Ls~N~-l~~~~--------------------~l~~l~~L~~L~Ls~N 74 (176)
T 1a9n_A 17 NAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNE-IRKLD--------------------GFPLLRRLKTLLVNNN 74 (176)
T ss_dssp CTTSCEEEECTTSCC-CSCCCGGGGTTCCSEEECCSSC-CCEEC--------------------CCCCCSSCCEEECCSS
T ss_pred CcCCceEEEeeCCCC-chhHHhhhcCCCCCEEECCCCC-CCccc--------------------ccccCCCCCEEECCCC
Confidence 578889999888742 222 111222377777777664 33321 1234445555555431
Q ss_pred cchhhhhhhcccccCCCCccEEEEeechhhh--hcc-CCCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478 347 MLTRVRNVVGPITSCFPQLKTLELDSCDELY--AQF-SEHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQF 423 (509)
Q Consensus 347 ~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~--~~~-~~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~ 423 (509)
.-. .....++..+++|+.|.++.+. +. ..+ ....+++|++|++..+...... ..-..++..+|+|+.|++..
T Consensus 75 ~l~---~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~-~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 75 RIC---RIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKK-HYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp CCC---EECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGST-THHHHHHHHCTTCSEETTEE
T ss_pred ccc---ccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcH-hHHHHHHHHCCccceeCCCc
Confidence 111 1111223567788888887432 21 111 1456778888888554322111 12234678889999888876
Q ss_pred e
Q 010478 424 D 424 (509)
Q Consensus 424 ~ 424 (509)
.
T Consensus 150 n 150 (176)
T 1a9n_A 150 V 150 (176)
T ss_dssp C
T ss_pred C
Confidence 4
No 121
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=95.62 E-value=0.0019 Score=58.86 Aligned_cols=128 Identities=19% Similarity=0.124 Sum_probs=64.2
Q ss_pred cCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEE--ecccccceEEEEecccCccEEEEECCceeEEE
Q 010478 243 GVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKV--VGSAIQLKHLRISTCYRLNEIKISTPNLLSFK 320 (509)
Q Consensus 243 ~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i--~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~ 320 (509)
-.++|+.|+|++..+++- ....+.+++.|++|++.++.- +.+.- -..+++|+.|++.++. +..+.
T Consensus 26 ~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~---------- 92 (208)
T 2o6s_A 26 IPAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQ-LQSLP---------- 92 (208)
T ss_dssp CCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCC----------
T ss_pred CCCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCcc-CccChhhcCCCCCcCEEECCCCc-CCccC----------
Confidence 346788888887766532 122356788888888887642 21110 0123556666665543 11110
Q ss_pred EecCCccceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEe
Q 010478 321 YFGPGQELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRV 395 (509)
Q Consensus 321 ~~g~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~ 395 (509)
...+.++++|+.+++....- .......+..+++|+.|.++.+. +....+ +..+++|++|+|..
T Consensus 93 --------~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 93 --------NGVFDKLTQLKELALNTNQL---QSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp --------TTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred --------HhHhcCccCCCEEEcCCCcC---cccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecC
Confidence 01133445555555543111 11111223456777777776332 211111 44566777777743
No 122
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=95.57 E-value=0.011 Score=62.88 Aligned_cols=73 Identities=15% Similarity=0.068 Sum_probs=42.5
Q ss_pred CcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEECCceeEEEEec
Q 010478 244 VKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYFG 323 (509)
Q Consensus 244 ~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~~~g 323 (509)
+++|+.|+|++..++. +. ..++.|+.|+|+++.- +.+ ..-..+|+.|.+.++. +..+.-..++|+.|.+++
T Consensus 79 ~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l-~~i--p~l~~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 79 PPQITVLEITQNALIS--LP---ELPASLEYLDACDNRL-STL--PELPASLKHLDVDNNQ-LTMLPELPALLEYINADN 149 (571)
T ss_dssp CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCC-SCC--CCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCS
T ss_pred cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCC-CCc--chhhcCCCEEECCCCc-CCCCCCcCccccEEeCCC
Confidence 4678888888776653 22 4577888888887742 221 1111377777777664 222221445666666665
Q ss_pred CC
Q 010478 324 PG 325 (509)
Q Consensus 324 ~~ 325 (509)
..
T Consensus 150 N~ 151 (571)
T 3cvr_A 150 NQ 151 (571)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 123
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=95.21 E-value=0.00033 Score=70.57 Aligned_cols=40 Identities=23% Similarity=0.182 Sum_probs=21.9
Q ss_pred ccccCCCCccEEEEeechhhh---hccC--CCCCCcccEEEEEee
Q 010478 357 PITSCFPQLKTLELDSCDELY---AQFS--EHELPNLTHLHLRVA 396 (509)
Q Consensus 357 ~l~~~l~~L~~L~L~~~~~~~---~~~~--~~~f~~Lk~L~L~~~ 396 (509)
..+...++|+.|+|+.+.--. ..+. ....++|++|+|..+
T Consensus 205 ~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 205 AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred HHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 334455678888887442111 1111 345577888888444
No 124
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=95.20 E-value=0.045 Score=54.07 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=32.5
Q ss_pred cccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478 358 ITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQF 423 (509)
Q Consensus 358 l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~ 423 (509)
.+..+++|+.|+|+... + ..+|...|.+|++|.+... .. ...+. -++..++|+.+++..
T Consensus 197 ~f~~l~~L~~LdLs~N~-l-~~lp~~~~~~L~~L~~l~~--~~--l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 197 VFHGASGPVILDISRTR-I-HSLPSYGLENLKKLRARST--YN--LKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp TTTTEECCSEEECTTSC-C-CCCCSSSCTTCCEEECTTC--TT--CCCCC-CTTTCCSCCEEECSC
T ss_pred HhccCcccchhhcCCCC-c-CccChhhhccchHhhhccC--CC--cCcCC-CchhCcChhhCcCCC
Confidence 34566788888887332 2 2334445777777776222 11 10111 145677788777753
No 125
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=95.16 E-value=0.012 Score=54.58 Aligned_cols=125 Identities=17% Similarity=0.203 Sum_probs=72.4
Q ss_pred ecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeeccCccCHHHHHHH
Q 010478 332 IENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATLNRESLLGLASI 409 (509)
Q Consensus 332 ~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~l 409 (509)
+.++++|+.+++....- .......+..+++|+.|.|+.+ .+....+ +..+++|++|+|..+.-. .+..-
T Consensus 60 ~~~l~~L~~L~L~~N~l---~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~-----~lp~~ 130 (229)
T 3e6j_A 60 FDSLINLKELYLGSNQL---GALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCNKLT-----ELPRG 130 (229)
T ss_dssp TTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-----SCCTT
T ss_pred hhCccCCcEEECCCCCC---CCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEeccCCccc-----ccCcc
Confidence 45667777777765221 1111233467889999999843 3322222 567889999999554322 23334
Q ss_pred hhcCCCCcEEEEEEeecCCccCCccccCc---cccCCccEEEEec--ccCCccHHH-HHHHHHhcCccC
Q 010478 410 MKACPFLQTLIVQFDYNGYKVGRRRKVPR---HSHQHLKLVELHG--FLGRPIDLE-LAFYILENAMTL 472 (509)
Q Consensus 410 L~~~P~Le~L~i~~~~~~~~~~~~~~~p~---c~~~~Lk~V~i~~--f~g~~~e~~-l~~~lL~na~~L 472 (509)
+..+++|+.|++... .+..++. ..+.+|+.+.+.| +.+...++. +..++.++...+
T Consensus 131 ~~~l~~L~~L~L~~N-------~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~ 192 (229)
T 3e6j_A 131 IERLTHLTHLALDQN-------QLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIA 192 (229)
T ss_dssp GGGCTTCSEEECCSS-------CCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHCGGGE
T ss_pred cccCCCCCEEECCCC-------cCCccCHHHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhCcccc
Confidence 578899999988763 2223321 1356788888876 434443344 444555555444
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=95.05 E-value=0.00045 Score=62.68 Aligned_cols=35 Identities=26% Similarity=0.244 Sum_probs=18.3
Q ss_pred cCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecc
Q 010478 243 GVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRS 280 (509)
Q Consensus 243 ~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c 280 (509)
.+++|+.|+|++..+.+ +. .+.+++.|+.|++.++
T Consensus 46 ~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n 80 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRN 80 (198)
T ss_dssp HTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEE
T ss_pred cCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCC
Confidence 45556666665555544 11 2344555666665555
No 127
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.70 E-value=0.0049 Score=55.27 Aligned_cols=64 Identities=17% Similarity=0.203 Sum_probs=34.5
Q ss_pred cCCCCccEEEEeechh----hhhccC-CCCCCcccEEEE--EeeccCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478 360 SCFPQLKTLELDSCDE----LYAQFS-EHELPNLTHLHL--RVATLNRESLLGLASIMKACPFLQTLIVQF 423 (509)
Q Consensus 360 ~~l~~L~~L~L~~~~~----~~~~~~-~~~f~~Lk~L~L--~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~ 423 (509)
...++|++|.|+.+.- ...... ....++|++|+| ..+..+......+...++.++.|+.|++..
T Consensus 90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence 3456677777763321 001111 444556777777 333333333344666777777777777654
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=94.60 E-value=0.025 Score=55.33 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=21.8
Q ss_pred CcCCcEEEEee-E-EEChhhHHHHHhCCccccceeeecc
Q 010478 244 VKYLRSLRLFS-V-NVTGEILEFILHNCPLLDQLSVVRS 280 (509)
Q Consensus 244 ~p~Lk~L~L~~-v-~~~~~~l~~lls~CP~Le~L~L~~c 280 (509)
+++|++|.|.. + .+.+.. +.+|+.|++|.+.+.
T Consensus 100 ~~~L~~l~L~~~i~~I~~~a----F~~~~~L~~l~l~~n 134 (329)
T 3sb4_A 100 KQTLEKVILSEKIKNIEDAA----FKGCDNLKICQIRKK 134 (329)
T ss_dssp CTTCCC-CBCTTCCEECTTT----TTTCTTCCEEEBCCS
T ss_pred cCCCcEEECCccccchhHHH----hhcCcccceEEcCCC
Confidence 78888888865 2 244443 467888888888654
No 129
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=94.54 E-value=0.023 Score=52.15 Aligned_cols=14 Identities=14% Similarity=-0.038 Sum_probs=7.0
Q ss_pred hhcCCCCcEEEEEE
Q 010478 410 MKACPFLQTLIVQF 423 (509)
Q Consensus 410 L~~~P~Le~L~i~~ 423 (509)
+..+++|+.|++..
T Consensus 124 ~~~l~~L~~L~L~~ 137 (220)
T 2v9t_B 124 FQDLHNLNLLSLYD 137 (220)
T ss_dssp TTTCTTCCEEECCS
T ss_pred cCCCCCCCEEECCC
Confidence 34455555555543
No 130
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=94.41 E-value=0.054 Score=49.68 Aligned_cols=122 Identities=13% Similarity=0.098 Sum_probs=71.5
Q ss_pred ccceEEEEecccCccEEEE----ECCceeEEEEecCCcc--ceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCcc
Q 010478 293 IQLKHLRISTCYRLNEIKI----STPNLLSFKYFGPGQE--LKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLK 366 (509)
Q Consensus 293 ~~Lk~L~l~~c~~l~~l~i----~aP~L~~L~~~g~~~~--~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~ 366 (509)
++|+.|.+.+.. +..+.- ..++|+.|.+.+..-. .+-.+.++++|+.+++....- ...-...+..+++|+
T Consensus 32 ~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l---~~l~~~~f~~l~~L~ 107 (220)
T 2v9t_B 32 ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI---TELPKSLFEGLFSLQ 107 (220)
T ss_dssp TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC---CCCCTTTTTTCTTCC
T ss_pred cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC---CccCHhHccCCCCCC
Confidence 578888887765 444431 2478888888876510 112456778888888876321 112223446778899
Q ss_pred EEEEeechhhhhccC--CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478 367 TLELDSCDELYAQFS--EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQF 423 (509)
Q Consensus 367 ~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~ 423 (509)
.|.|+.+ .+....+ +..+++|++|+|..+.-.... ...+..+++|+.|++..
T Consensus 108 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 108 LLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIA----KGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCS
T ss_pred EEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEEC----HHHHhCCCCCCEEEeCC
Confidence 9988743 2222222 567788898888554322111 12345567777766654
No 131
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=94.38 E-value=0.0097 Score=63.20 Aligned_cols=140 Identities=12% Similarity=0.004 Sum_probs=68.6
Q ss_pred CcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEecccCccEEEEECCceeEEEEec
Q 010478 244 VKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIKISTPNLLSFKYFG 323 (509)
Q Consensus 244 ~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L~~~g 323 (509)
+++|+.|+|++..++. +.. +.+ .|+.|+|.++.- +.+ ...+++|+.|.+.++. +..+.-..++|+.|.+++
T Consensus 99 l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L~Ls~N~l-~~l--p~~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 99 PASLEYLDACDNRLST--LPE-LPA--SLKHLDVDNNQL-TML--PELPALLEYINADNNQ-LTMLPELPTSLEVLSVRN 169 (571)
T ss_dssp CTTCCEEECCSSCCSC--CCC-CCT--TCCEEECCSSCC-SCC--CCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCS
T ss_pred cCCCCEEEccCCCCCC--cch-hhc--CCCEEECCCCcC-CCC--CCcCccccEEeCCCCc-cCcCCCcCCCcCEEECCC
Confidence 4667777776665543 222 222 677777776542 111 1134667777776654 332222446677777766
Q ss_pred CCc-cceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeec
Q 010478 324 PGQ-ELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVAT 397 (509)
Q Consensus 324 ~~~-~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~ 397 (509)
+.- ..+. +. ++|+.+++..+.-..+..+...+....+.++.|.|+.+. + ..+| ...+++|++|+|..+.
T Consensus 170 N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~-l-~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 170 NQLTFLPE-LP--ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENR-I-THIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp SCCSCCCC-CC--TTCCEEECCSSCCSSCCCCC--------CCEEEECCSSC-C-CCCCGGGGGSCTTEEEECCSSS
T ss_pred CCCCCcch-hh--CCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCc-c-eecCHHHhcCCCCCEEEeeCCc
Confidence 541 1111 22 667777766522111110000111111223888887432 2 2234 4458899999985543
No 132
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=94.24 E-value=0.02 Score=51.93 Aligned_cols=12 Identities=42% Similarity=0.551 Sum_probs=5.9
Q ss_pred cCCCCccEEEEe
Q 010478 360 SCFPQLKTLELD 371 (509)
Q Consensus 360 ~~l~~L~~L~L~ 371 (509)
..+++|+.|.++
T Consensus 97 ~~l~~L~~L~L~ 108 (208)
T 2o6s_A 97 DKLTQLKELALN 108 (208)
T ss_dssp TTCTTCCEEECC
T ss_pred cCccCCCEEEcC
Confidence 344455555554
No 133
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=93.71 E-value=0.032 Score=51.23 Aligned_cols=12 Identities=42% Similarity=0.423 Sum_probs=6.3
Q ss_pred cCCCCccEEEEe
Q 010478 360 SCFPQLKTLELD 371 (509)
Q Consensus 360 ~~l~~L~~L~L~ 371 (509)
..+++|++|.|+
T Consensus 102 ~~l~~L~~L~Ls 113 (220)
T 2v70_A 102 KGLESLKTLMLR 113 (220)
T ss_dssp TTCSSCCEEECT
T ss_pred cCCcCCCEEECC
Confidence 345555555554
No 134
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=93.68 E-value=0.025 Score=52.32 Aligned_cols=121 Identities=20% Similarity=0.110 Sum_probs=58.4
Q ss_pred CccccceeeecccceeeE-EEecccccceEEEEecccCccEEEE----ECCceeEEEEecCCcc-c-eeeecCCCCceEE
Q 010478 269 CPLLDQLSVVRSETLVSL-KVVGSAIQLKHLRISTCYRLNEIKI----STPNLLSFKYFGPGQE-L-KLHIENAPQLVDI 341 (509)
Q Consensus 269 CP~Le~L~L~~c~~~~~l-~i~~~~~~Lk~L~l~~c~~l~~l~i----~aP~L~~L~~~g~~~~-~-~~~~~~~~~L~~l 341 (509)
.+.|+.|+|+++.-.... ..-..+++|+.|.+.++. +..+.. ..++|+.|.+++..-. . .-.+..+++|+.+
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeE
Confidence 378999999887532210 001234778888887765 333321 2466677766655410 0 1113445566666
Q ss_pred EEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEe
Q 010478 342 SFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRV 395 (509)
Q Consensus 342 ~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~ 395 (509)
++....... +..-+..+++|+.|.|+.+ .+....+ +..+++|++|+|..
T Consensus 118 ~Ls~N~l~~----lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 118 FMCCNKLTE----LPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp ECCSSCCCS----CCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTT
T ss_pred eccCCcccc----cCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeC
Confidence 655421111 1111234556666666532 1211111 34455666666533
No 135
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=93.43 E-value=0.029 Score=47.77 Aligned_cols=12 Identities=17% Similarity=0.241 Sum_probs=7.3
Q ss_pred ccceEEEEeccc
Q 010478 293 IQLKHLRISTCY 304 (509)
Q Consensus 293 ~~Lk~L~l~~c~ 304 (509)
++|+.|.+.+|.
T Consensus 17 ~~l~~L~l~~n~ 28 (149)
T 2je0_A 17 SDVKELVLDNSR 28 (149)
T ss_dssp GGCSEEECTTCB
T ss_pred ccCeEEEccCCc
Confidence 456666666654
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=93.09 E-value=0.0084 Score=63.75 Aligned_cols=117 Identities=15% Similarity=0.198 Sum_probs=60.9
Q ss_pred cccceeeecccceeeEEEecccccceEEEEecccCccEEE--E-ECCceeEEEEecCC-ccceeeecCCCCceEEEEEec
Q 010478 271 LLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCYRLNEIK--I-STPNLLSFKYFGPG-QELKLHIENAPQLVDISFRGV 346 (509)
Q Consensus 271 ~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~~l~~l~--i-~aP~L~~L~~~g~~-~~~~~~~~~~~~L~~l~i~~~ 346 (509)
.|+.|+|+++.- +.+.--..+++|+.|++.++. +..+. + ..++|+.|.+++.. ...+ .+.++++|+.+++..+
T Consensus 442 ~L~~L~Ls~n~l-~~lp~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDL-TVLCHLEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCC-SSCCCGGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCC-CCCcCccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence 466666666532 211112234566777766654 33221 1 24667777776654 1123 4667778888877662
Q ss_pred cchhhhhhhcccccCCCCccEEEEeechhhhhccC-----CCCCCcccEEEE
Q 010478 347 MLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS-----EHELPNLTHLHL 393 (509)
Q Consensus 347 ~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~-----~~~f~~Lk~L~L 393 (509)
.-.... ....+..+++|+.|.|+.+. +....+ ...+++|+.|++
T Consensus 519 ~l~~~~--~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSA--AIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSS--TTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCC--CcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 211110 02334568889999987432 211111 233778888753
No 137
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=92.87 E-value=0.023 Score=56.55 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=17.2
Q ss_pred ecCCCCceEEEEEeccchhhhhhhcccc---cCCCCccEEEEe
Q 010478 332 IENAPQLVDISFRGVMLTRVRNVVGPIT---SCFPQLKTLELD 371 (509)
Q Consensus 332 ~~~~~~L~~l~i~~~~~~~~~~~~~~l~---~~l~~L~~L~L~ 371 (509)
+.++++|+.+++.......+. ..++ ..+++|+.|+|+
T Consensus 132 ~~~l~~L~~L~L~~N~l~~l~---~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 132 FEDMAQLQKLYLSQNQISRFP---VELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp TTTCTTCCEEECCSSCCCSCC---GGGTC----CTTCCEEECC
T ss_pred hCCcccCCEEECCCCcCCeeC---HHHhcCcccCCcCCEEECC
Confidence 445566666666542111111 0111 346677777776
No 138
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=92.85 E-value=0.042 Score=54.58 Aligned_cols=120 Identities=21% Similarity=0.217 Sum_probs=61.2
Q ss_pred ccccceeeecccceeeEEE---ecccccceEEEEecccCccEEEE----ECCceeEEEEecCCcc-c-eeeecCCCCceE
Q 010478 270 PLLDQLSVVRSETLVSLKV---VGSAIQLKHLRISTCYRLNEIKI----STPNLLSFKYFGPGQE-L-KLHIENAPQLVD 340 (509)
Q Consensus 270 P~Le~L~L~~c~~~~~l~i---~~~~~~Lk~L~l~~c~~l~~l~i----~aP~L~~L~~~g~~~~-~-~~~~~~~~~L~~ 340 (509)
+.|+.|+|++.. ++.+.. ...+++|+.|.+.++. +..+.- ..++|+.|.+++..-. . ...+.++++|+.
T Consensus 39 ~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 39 SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV 116 (361)
T ss_dssp TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCE
Confidence 458888888864 232211 1145788888887765 444431 2467777777665410 0 112445666776
Q ss_pred EEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC---C---CCCCcccEEEEEee
Q 010478 341 ISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS---E---HELPNLTHLHLRVA 396 (509)
Q Consensus 341 l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~---~---~~f~~Lk~L~L~~~ 396 (509)
+++....-. ......+..+++|+.|.|+.+. + ..++ + ..+++|++|+|..+
T Consensus 117 L~L~~N~i~---~~~~~~~~~l~~L~~L~L~~N~-l-~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 117 LLLYNNHIV---VVDRNAFEDMAQLQKLYLSQNQ-I-SRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp EECCSSCCC---EECTTTTTTCTTCCEEECCSSC-C-CSCCGGGTC----CTTCCEEECCSS
T ss_pred EECCCCccc---EECHHHhCCcccCCEEECCCCc-C-CeeCHHHhcCcccCCcCCEEECCCC
Confidence 666552111 1111233456667777766321 1 1111 1 34666777776443
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=92.49 E-value=0.036 Score=49.68 Aligned_cols=52 Identities=25% Similarity=0.234 Sum_probs=28.4
Q ss_pred cCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeecc-CccCHHHHHHHhhc
Q 010478 360 SCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATL-NRESLLGLASIMKA 412 (509)
Q Consensus 360 ~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~-~~~~~~~l~~lL~~ 412 (509)
..+++|+.|.|+.. .+....+ +..+++|++|+|..+.. ......++...++.
T Consensus 99 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~ 153 (192)
T 1w8a_A 99 LGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRK 153 (192)
T ss_dssp TTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHH
T ss_pred cCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHH
Confidence 45677777777632 2222223 56677888888855432 12334455554443
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=92.34 E-value=0.0028 Score=57.36 Aligned_cols=61 Identities=25% Similarity=0.251 Sum_probs=40.0
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEecccccceEEEEeccc
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVGSAIQLKHLRISTCY 304 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~~~~~Lk~L~l~~c~ 304 (509)
+..+++|+.|+|++..+.+ +...+..+|.|+.|++.++.- +.+.--..+++|+.|.+.++.
T Consensus 66 ~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l-~~l~~~~~l~~L~~L~l~~N~ 126 (198)
T 1ds9_A 66 LSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQI-ASLSGIEKLVNLRVLYMSNNK 126 (198)
T ss_dssp HHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEEC-CCHHHHHHHHHSSEEEESEEE
T ss_pred cccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcC-CcCCccccCCCCCEEECCCCc
Confidence 4567899999999888873 344556678999999988742 221101123567777766553
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=91.80 E-value=0.28 Score=42.85 Aligned_cols=101 Identities=18% Similarity=0.163 Sum_probs=55.7
Q ss_pred ccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCcccc
Q 010478 359 TSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKV 436 (509)
Q Consensus 359 ~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~ 436 (509)
+..+++|++|.++.+ .+....+ +..+++|++|++..+.-... ....+..+++|+.|++... .+..+
T Consensus 48 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~l~~N-------~l~~~ 115 (177)
T 2o6r_A 48 FDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQSL----PNGVFDKLTQLKELALDTN-------QLKSV 115 (177)
T ss_dssp TTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSS-------CCSCC
T ss_pred hcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCcccc----CHHHhhCCcccCEEECcCC-------cceEe
Confidence 356677888887733 2222112 45677888888744322211 1224566788888887652 22223
Q ss_pred Cc---cccCCccEEEEec--ccCCccHHHHHHHHHhcCcc
Q 010478 437 PR---HSHQHLKLVELHG--FLGRPIDLELAFYILENAMT 471 (509)
Q Consensus 437 p~---c~~~~Lk~V~i~~--f~g~~~e~~l~~~lL~na~~ 471 (509)
|. ....+|+.+.+.+ +.+...+++.+...+++...
T Consensus 116 ~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~~~~~~ 155 (177)
T 2o6r_A 116 PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQ 155 (177)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTGG
T ss_pred CHHHhcCCcccCEEEecCCCeeccCccHHHHHHHHhhCcc
Confidence 32 1256788888876 44544556666555555443
No 142
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=91.44 E-value=0.13 Score=45.73 Aligned_cols=127 Identities=15% Similarity=0.071 Sum_probs=74.2
Q ss_pred hhhhcccccCCCCccEEEEeechhh-hh----ccC-CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEee
Q 010478 352 RNVVGPITSCFPQLKTLELDSCDEL-YA----QFS-EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDY 425 (509)
Q Consensus 352 ~~~~~~l~~~l~~L~~L~L~~~~~~-~~----~~~-~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~ 425 (509)
...+..++...++|++|.|+.+..+ .. ... ....++|++|+|..+.-+......+...++..+.|+.|++....
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 3445566778889999999865233 11 111 55678899999855543344445567778888999999887631
Q ss_pred cCCccCCccccCc--cccCCccEEEE--ecccCCccHHHHHHHHHhcCccCCcEEEEec
Q 010478 426 NGYKVGRRRKVPR--HSHQHLKLVEL--HGFLGRPIDLELAFYILENAMTLEKMVVNRT 480 (509)
Q Consensus 426 ~~~~~~~~~~~p~--c~~~~Lk~V~i--~~f~g~~~e~~l~~~lL~na~~Le~m~I~~~ 480 (509)
-... ....+.+ ....+|+.+.+ .+-.-.......+.-.++..+.|+.+.+...
T Consensus 105 i~~~--g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 105 ISGS--GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CCHH--HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CCHH--HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 0000 0000111 12357899998 4433333333334445566788999988643
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=90.98 E-value=0.09 Score=47.10 Aligned_cols=53 Identities=21% Similarity=0.243 Sum_probs=29.7
Q ss_pred ccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeecc-CccCHHHHHHHhhc
Q 010478 359 TSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATL-NRESLLGLASIMKA 412 (509)
Q Consensus 359 ~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~-~~~~~~~l~~lL~~ 412 (509)
+..+++|+.|.|+... +....+ +..+++|++|+|..+.. .+.+..++...++.
T Consensus 98 f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~ 153 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKS 153 (193)
T ss_dssp TTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred hCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHh
Confidence 3566778888877322 211111 45677888888855421 13445566666554
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=90.58 E-value=0.14 Score=45.78 Aligned_cols=96 Identities=14% Similarity=0.092 Sum_probs=42.5
Q ss_pred cCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccC
Q 010478 360 SCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVP 437 (509)
Q Consensus 360 ~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p 437 (509)
..+++|+.|.|+.+. +....+ +..+++|++|+|..+.-.... ...+...++|+.|++... .+..++
T Consensus 51 ~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~----~~~f~~l~~L~~L~L~~N-------~l~~~~ 118 (193)
T 2wfh_A 51 SNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNRLRCIP----PRTFDGLKSLRLLSLHGN-------DISVVP 118 (193)
T ss_dssp GGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCC----TTTTTTCTTCCEEECCSS-------CCCBCC
T ss_pred hcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCccCEeC----HHHhCCCCCCCEEECCCC-------CCCeeC
Confidence 345556666665221 211111 445556666666333221111 113445666666666542 122222
Q ss_pred cc---ccCCccEEEEec--ccCCccHHHHHHHHHh
Q 010478 438 RH---SHQHLKLVELHG--FLGRPIDLELAFYILE 467 (509)
Q Consensus 438 ~c---~~~~Lk~V~i~~--f~g~~~e~~l~~~lL~ 467 (509)
.- .+.+|+.+.+.+ +.+...-..|..++-.
T Consensus 119 ~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~ 153 (193)
T 2wfh_A 119 EGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKS 153 (193)
T ss_dssp TTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred hhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHh
Confidence 11 245666666665 3333333445554443
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=89.95 E-value=0.18 Score=44.12 Aligned_cols=12 Identities=8% Similarity=0.083 Sum_probs=6.8
Q ss_pred ccceEEEEeccc
Q 010478 293 IQLKHLRISTCY 304 (509)
Q Consensus 293 ~~Lk~L~l~~c~ 304 (509)
++|+.|.+.++.
T Consensus 28 ~~l~~L~l~~n~ 39 (177)
T 2o6r_A 28 SSATRLELESNK 39 (177)
T ss_dssp TTCSEEECCSSC
T ss_pred CCCcEEEeCCCc
Confidence 456666665543
No 146
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=87.05 E-value=0.076 Score=58.13 Aligned_cols=39 Identities=10% Similarity=0.129 Sum_probs=23.1
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeeccc
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSE 281 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~ 281 (509)
+..++.|+.|+|++..+.. +..-+.+++.|+.|+|.++.
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~ 258 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNS 258 (727)
T ss_dssp --CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSC
T ss_pred hccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCc
Confidence 4566777777777766542 11112367777777777764
No 147
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=86.86 E-value=0.34 Score=43.08 Aligned_cols=27 Identities=15% Similarity=0.046 Sum_probs=12.6
Q ss_pred CCccEEEEec--ccCCccHHHHHHHHHhc
Q 010478 442 QHLKLVELHG--FLGRPIDLELAFYILEN 468 (509)
Q Consensus 442 ~~Lk~V~i~~--f~g~~~e~~l~~~lL~n 468 (509)
.+|+.+.+.+ +.+......+..++-.+
T Consensus 126 ~~L~~L~L~~N~l~c~c~l~~~~~~l~~~ 154 (192)
T 1w8a_A 126 NSLTSLNLASNPFNCNCHLAWFAEWLRKK 154 (192)
T ss_dssp TTCCEEECTTCCBCCSGGGHHHHHHHHHH
T ss_pred CCCCEEEeCCCCccCcCcchHHHHHHHHc
Confidence 4555555544 33443334444444433
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=86.22 E-value=0.51 Score=40.99 Aligned_cols=81 Identities=21% Similarity=0.234 Sum_probs=44.2
Q ss_pred ecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCcccEEEEEeeccC--ccCHHHHH
Q 010478 332 IENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLTHLHLRVATLN--RESLLGLA 407 (509)
Q Consensus 332 ~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk~L~L~~~~~~--~~~~~~l~ 407 (509)
+.++++|+.+++....- .......+..+++|+.|.|+.. .+....+ +..+++|++|+|..+... -.+..++.
T Consensus 50 ~~~l~~L~~L~Ls~N~l---~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~ 125 (170)
T 3g39_A 50 FDRLTQLTRLDLDNNQL---TVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLS 125 (170)
T ss_dssp TTTCTTCSEEECCSSCC---CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHH
T ss_pred hcCcccCCEEECCCCCc---CccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHH
Confidence 45666777777665221 1112233456788888888732 2222222 456778888888554321 11355566
Q ss_pred HHhhcCCCC
Q 010478 408 SIMKACPFL 416 (509)
Q Consensus 408 ~lL~~~P~L 416 (509)
..++..+.+
T Consensus 126 ~~l~~~~~~ 134 (170)
T 3g39_A 126 RWISQHPGL 134 (170)
T ss_dssp HHHHHCGGG
T ss_pred HHHHhCcce
Confidence 666666544
No 149
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=86.20 E-value=0.51 Score=45.80 Aligned_cols=119 Identities=10% Similarity=0.088 Sum_probs=60.6
Q ss_pred CcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEec----ccccceEEEEecccCccEEEEECCceeEE
Q 010478 244 VKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVVG----SAIQLKHLRISTCYRLNEIKISTPNLLSF 319 (509)
Q Consensus 244 ~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~~----~~~~Lk~L~l~~c~~l~~l~i~aP~L~~L 319 (509)
..+++.+.+.+. +...++..+...|+.|+.|+|.++. ++ .|.. .|.+|+.|.+.+ +++++
T Consensus 201 ~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~-i~--~I~~~aF~~~~~L~~l~l~~------------ni~~I 264 (329)
T 3sb4_A 201 PRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTN-AT--TIPDFTFAQKKYLLKIKLPH------------NLKTI 264 (329)
T ss_dssp GGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBC-CC--EECTTTTTTCTTCCEEECCT------------TCCEE
T ss_pred ccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCC-cc--eecHhhhhCCCCCCEEECCc------------cccee
Confidence 344455555543 3444555556668888888887653 22 2221 234555554432 12221
Q ss_pred EEecCCccceeeecCCCCce-EEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC---CCCCCcccEEE
Q 010478 320 KYFGPGQELKLHIENAPQLV-DISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS---EHELPNLTHLH 392 (509)
Q Consensus 320 ~~~g~~~~~~~~~~~~~~L~-~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~---~~~f~~Lk~L~ 392 (509)
....|.++++|+ .+.+.... ..+-...+.+|++|+.|.+.. ..+ ..++ +..+++|+++.
T Consensus 265 --------~~~aF~~~~~L~~~l~l~~~l----~~I~~~aF~~c~~L~~l~l~~-n~i-~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 265 --------GQRVFSNCGRLAGTLELPASV----TAIEFGAFMGCDNLRYVLATG-DKI-TTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp --------CTTTTTTCTTCCEEEEECTTC----CEECTTTTTTCTTEEEEEECS-SCC-CEECTTTTCTTCCCCEEE
T ss_pred --------hHHHhhCChhccEEEEEcccc----eEEchhhhhCCccCCEEEeCC-Ccc-CccchhhhcCCcchhhhc
Confidence 111356677777 77765411 111123346788888888852 111 1111 55666777664
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=85.72 E-value=0.53 Score=47.36 Aligned_cols=11 Identities=9% Similarity=0.054 Sum_probs=5.7
Q ss_pred hcCCCCcEEEE
Q 010478 411 KACPFLQTLIV 421 (509)
Q Consensus 411 ~~~P~Le~L~i 421 (509)
..|++|+.+.|
T Consensus 320 ~~c~~L~~l~l 330 (401)
T 4fdw_A 320 GGNRKVTQLTI 330 (401)
T ss_dssp TTCCSCCEEEE
T ss_pred cCCCCccEEEE
Confidence 44555555554
No 151
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=83.96 E-value=0.097 Score=57.25 Aligned_cols=61 Identities=25% Similarity=0.222 Sum_probs=41.5
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEE-EecccccceEEEEeccc
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLK-VVGSAIQLKHLRISTCY 304 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~-i~~~~~~Lk~L~l~~c~ 304 (509)
+..+++|+.|+|++..++ .+..-+.+++.|+.|+|+++.- +.+. --..+++|+.|.+.++.
T Consensus 243 ~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~L~~N~ 304 (727)
T 4b8c_D 243 IFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQLKYFYFFDNM 304 (727)
T ss_dssp GGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCC-SSCCSSGGGGTTCSEEECCSSC
T ss_pred hcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcC-CccChhhcCCCCCCEEECCCCC
Confidence 457899999999988776 2333357899999999999863 2220 01234677777777664
No 152
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=83.53 E-value=0.55 Score=49.65 Aligned_cols=170 Identities=19% Similarity=0.187 Sum_probs=84.8
Q ss_pred ccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccce-------------eeE-EEecccccceEEEEecccC--
Q 010478 242 SGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETL-------------VSL-KVVGSAIQLKHLRISTCYR-- 305 (509)
Q Consensus 242 ~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~-------------~~l-~i~~~~~~Lk~L~l~~c~~-- 305 (509)
..++.|+.|+|++-.+. .+..-+..|+.|++|++.++..+ +.. ..-..+++|+.|+...+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~--~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST--VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH--HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH--hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 45678888888765543 46666778888888887655310 000 0001123444444111100
Q ss_pred -ccE-------E-EEECCceeEEEEecCCc-cceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechh
Q 010478 306 -LNE-------I-KISTPNLLSFKYFGPGQ-ELKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDE 375 (509)
Q Consensus 306 -l~~-------l-~i~aP~L~~L~~~g~~~-~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~ 375 (509)
+.. + .+....|+.|.+++..- ..+ .+.++++|+.+++....-. .+..-+..+++|+.|.|+.+.
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp-~~~~l~~L~~L~Ls~N~l~----~lp~~~~~l~~L~~L~Ls~N~- 497 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLR----ALPPALAALRCLEVLQASDNA- 497 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCC----CCCGGGGGCTTCCEEECCSSC-
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCCCc-CccccccCcEeecCccccc----ccchhhhcCCCCCEEECCCCC-
Confidence 000 0 01123466666665541 122 2556667777776652211 111233566777777776322
Q ss_pred hhhccC-CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478 376 LYAQFS-EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQF 423 (509)
Q Consensus 376 ~~~~~~-~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~ 423 (509)
+ ..+| +..+++|++|+|..+.-.... ....+..+++|+.|++..
T Consensus 498 l-~~lp~l~~l~~L~~L~Ls~N~l~~~~---~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 498 L-ENVDGVANLPRLQELLLCNNRLQQSA---AIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp C-CCCGGGTTCSSCCEEECCSSCCCSSS---TTGGGGGCTTCCEEECTT
T ss_pred C-CCCcccCCCCCCcEEECCCCCCCCCC---CcHHHhcCCCCCEEEecC
Confidence 2 1233 556677777777443221110 034456677777777765
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=83.41 E-value=1.5 Score=37.99 Aligned_cols=78 Identities=18% Similarity=0.148 Sum_probs=35.8
Q ss_pred CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEeecCCccCCccccCcc---ccCCccEEEEec--ccCCc
Q 010478 382 EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDYNGYKVGRRRKVPRH---SHQHLKLVELHG--FLGRP 456 (509)
Q Consensus 382 ~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~~~~~~~~~~~~p~c---~~~~Lk~V~i~~--f~g~~ 456 (509)
+..+++|++|+|..+.-.... ...+...++|+.|++... .+..++.- .+.+|+.+.+.+ +.+..
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~l~----~~~f~~l~~L~~L~L~~N-------~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 50 FDRLTQLTRLDLDNNQLTVLP----AGVFDKLTQLTQLSLNDN-------QLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp TTTCTTCSEEECCSSCCCCCC----TTTTTTCTTCCEEECCSS-------CCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred hcCcccCCEEECCCCCcCccC----hhhccCCCCCCEEECCCC-------ccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 445556666666333211111 123455666666666542 22222211 245666666665 33443
Q ss_pred cHHHHHHHHHhcCc
Q 010478 457 IDLELAFYILENAM 470 (509)
Q Consensus 457 ~e~~l~~~lL~na~ 470 (509)
.++..+...++..+
T Consensus 119 ~~l~~l~~~l~~~~ 132 (170)
T 3g39_A 119 SDILYLSRWISQHP 132 (170)
T ss_dssp GGGHHHHHHHHHCG
T ss_pred hhHHHHHHHHHhCc
Confidence 34555444444443
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=81.37 E-value=1.2 Score=38.74 Aligned_cols=96 Identities=15% Similarity=0.106 Sum_probs=44.5
Q ss_pred CceeEEEEecCCc-c-ceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC--CCCCCccc
Q 010478 314 PNLLSFKYFGPGQ-E-LKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS--EHELPNLT 389 (509)
Q Consensus 314 P~L~~L~~~g~~~-~-~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~--~~~f~~Lk 389 (509)
++|+.|.+++..- . .+-.+.++++|+.+++..... .......+..+++|+.|.|+.. .+....+ +..+++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l---~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~ 108 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL---TAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLT 108 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCS
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCC---CccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCC
Confidence 4455555544431 0 111245566666666655211 1111123355677777777632 2211111 44567777
Q ss_pred EEEEEeeccC--ccCHHHHHHHhhcC
Q 010478 390 HLHLRVATLN--RESLLGLASIMKAC 413 (509)
Q Consensus 390 ~L~L~~~~~~--~~~~~~l~~lL~~~ 413 (509)
+|+|..+... ..+..++..+++.-
T Consensus 109 ~L~L~~N~~~c~~~~~~~l~~~~~~~ 134 (174)
T 2r9u_A 109 HIYLYNNPWDCECRDIMYLRNWVADH 134 (174)
T ss_dssp EEECCSSCBCTTBGGGHHHHHHHHHC
T ss_pred EEEeCCCCcccccccHHHHHHHHHhc
Confidence 7777544321 11344455555443
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=79.72 E-value=0.68 Score=46.21 Aligned_cols=83 Identities=11% Similarity=0.150 Sum_probs=43.8
Q ss_pred ecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeeccCccCHHHHHHHhh
Q 010478 332 IENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNRESLLGLASIMK 411 (509)
Q Consensus 332 ~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~ 411 (509)
+.++.+|+++.+.... ...-...+.+|.+|+.++|...........+..+.+|+.+.|.... ...+ ..-+.
T Consensus 293 F~~~~~L~~i~l~~~i----~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~l-~~I~----~~aF~ 363 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDSV----KFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLSL-RKIG----ANAFQ 363 (394)
T ss_dssp TTTCTTCCEEEECTTC----CEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTTC-CEEC----TTTBT
T ss_pred cccccccccccccccc----ceechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECccc-cEeh----HHHhh
Confidence 3456677777664311 1111123467788888888521110011115667788888772211 1111 12367
Q ss_pred cCCCCcEEEEEE
Q 010478 412 ACPFLQTLIVQF 423 (509)
Q Consensus 412 ~~P~Le~L~i~~ 423 (509)
.|++|+++.+..
T Consensus 364 ~C~~L~~i~lp~ 375 (394)
T 4fs7_A 364 GCINLKKVELPK 375 (394)
T ss_dssp TCTTCCEEEEEG
T ss_pred CCCCCCEEEECC
Confidence 899999888743
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=78.98 E-value=2.6 Score=36.59 Aligned_cols=14 Identities=14% Similarity=0.000 Sum_probs=7.8
Q ss_pred hhcCCCCcEEEEEE
Q 010478 410 MKACPFLQTLIVQF 423 (509)
Q Consensus 410 L~~~P~Le~L~i~~ 423 (509)
+..+++|+.|++..
T Consensus 77 ~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 77 FDKLTQLTQLDLND 90 (174)
T ss_dssp TTTCTTCCEEECCS
T ss_pred hCCcchhhEEECCC
Confidence 34556666666544
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=78.96 E-value=0.86 Score=45.79 Aligned_cols=12 Identities=17% Similarity=0.365 Sum_probs=5.4
Q ss_pred cCCCCceEEEEE
Q 010478 333 ENAPQLVDISFR 344 (509)
Q Consensus 333 ~~~~~L~~l~i~ 344 (509)
.++++|+.+.+.
T Consensus 268 ~~c~~L~~l~l~ 279 (401)
T 4fdw_A 268 YYCPELAEVTTY 279 (401)
T ss_dssp TTCTTCCEEEEE
T ss_pred hCCCCCCEEEeC
Confidence 344444444443
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=76.78 E-value=3.1 Score=40.30 Aligned_cols=14 Identities=29% Similarity=0.429 Sum_probs=7.1
Q ss_pred hhcCCCCcEEEEEE
Q 010478 410 MKACPFLQTLIVQF 423 (509)
Q Consensus 410 L~~~P~Le~L~i~~ 423 (509)
+..+++|+.|+|..
T Consensus 76 ~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 76 FHFTPRLSRLNLSF 89 (347)
T ss_dssp GGSCSCCCEEECCS
T ss_pred hcCCcCCCEEeCCC
Confidence 34455555555543
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=67.74 E-value=3 Score=41.43 Aligned_cols=80 Identities=13% Similarity=0.059 Sum_probs=34.6
Q ss_pred ecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeeccCccCHHHHHHHhh
Q 010478 332 IENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNRESLLGLASIMK 411 (509)
Q Consensus 332 ~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~ 411 (509)
+.++.+|+++.|.... ...-...+.+|.+|++++|.....-.....+..+.+|+.+.+... .. ...-+.
T Consensus 307 F~~c~~L~~i~lp~~v----~~I~~~aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~------~~-~~~~~~ 375 (394)
T 4gt6_A 307 FAGCISLKSIDIPEGI----TQILDDAFAGCEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGS------RS-QWNAIS 375 (394)
T ss_dssp TTTCTTCCEEECCTTC----CEECTTTTTTCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSC------HH-HHHTCB
T ss_pred ecCCCCcCEEEeCCcc----cEehHhHhhCCCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCc------ee-ehhhhh
Confidence 4556666666654211 111112235677777777742110001111566777777776321 11 112344
Q ss_pred cCCCCcEEEEE
Q 010478 412 ACPFLQTLIVQ 422 (509)
Q Consensus 412 ~~P~Le~L~i~ 422 (509)
.|.+|+++.+.
T Consensus 376 ~~~~L~~i~i~ 386 (394)
T 4gt6_A 376 TDSGLQNLPVA 386 (394)
T ss_dssp CCCCC------
T ss_pred ccCCCCEEEeC
Confidence 56777777664
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=63.62 E-value=7.5 Score=37.45 Aligned_cols=51 Identities=25% Similarity=0.211 Sum_probs=25.2
Q ss_pred cccCCCCccEEEEeechhhhhccC---CCCCCcccEEEEEeeccC-ccCHHHHHHHhh
Q 010478 358 ITSCFPQLKTLELDSCDELYAQFS---EHELPNLTHLHLRVATLN-RESLLGLASIMK 411 (509)
Q Consensus 358 l~~~l~~L~~L~L~~~~~~~~~~~---~~~f~~Lk~L~L~~~~~~-~~~~~~l~~lL~ 411 (509)
.+..+++|+.|+|+.. .+ ..++ +..+ +|++|+|..+... .....++..+++
T Consensus 75 ~~~~l~~L~~L~l~~N-~l-~~~~~~~~~~~-~L~~l~l~~N~~~c~c~l~~~~~~~~ 129 (347)
T 2ifg_A 75 AFHFTPRLSRLNLSFN-AL-ESLSWKTVQGL-SLQELVLSGNPLHCSCALRWLQRWEE 129 (347)
T ss_dssp GGGSCSCCCEEECCSS-CC-SCCCSTTTCSC-CCCEEECCSSCCCCCGGGHHHHHHHH
T ss_pred HhcCCcCCCEEeCCCC-cc-ceeCHHHcccC-CceEEEeeCCCccCCCccHHHHHHHH
Confidence 3456777888877732 22 1222 2222 2777777544321 233445555544
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=62.21 E-value=3.9 Score=40.53 Aligned_cols=83 Identities=14% Similarity=0.180 Sum_probs=46.4
Q ss_pred ecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEEEeeccCccCHHHHHHHhh
Q 010478 332 IENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHLRVATLNRESLLGLASIMK 411 (509)
Q Consensus 332 ~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~ 411 (509)
+.+++.|+++.+..... ..-...+.+|.+|+.+.|...........+..+.+|+++.|-... ...+ ..-+.
T Consensus 284 F~~c~~L~~i~l~~~i~----~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~sv-~~I~----~~aF~ 354 (394)
T 4gt6_A 284 FMNCPALQDIEFSSRIT----ELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIAIPSSV-TKIP----ESAFS 354 (394)
T ss_dssp TTTCTTCCEEECCTTCC----EECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEECTTC-CBCC----GGGGT
T ss_pred cccccccccccCCCccc----ccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEEECccc-CEEh----HhHhh
Confidence 55677888777643111 111133467888999888521110011116677889988882211 1111 22467
Q ss_pred cCCCCcEEEEEE
Q 010478 412 ACPFLQTLIVQF 423 (509)
Q Consensus 412 ~~P~Le~L~i~~ 423 (509)
.|++|+++++..
T Consensus 355 ~C~~L~~i~~~~ 366 (394)
T 4gt6_A 355 NCTALNNIEYSG 366 (394)
T ss_dssp TCTTCCEEEESS
T ss_pred CCCCCCEEEECC
Confidence 899999888754
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=61.66 E-value=2.1 Score=40.37 Aligned_cols=61 Identities=28% Similarity=0.288 Sum_probs=36.5
Q ss_pred cccCCCCccEEEEeechhhhh--ccC-CCCCCcccEEEEEeeccCc-c--CHHHHHHHhhcCCCCcEEE
Q 010478 358 ITSCFPQLKTLELDSCDELYA--QFS-EHELPNLTHLHLRVATLNR-E--SLLGLASIMKACPFLQTLI 420 (509)
Q Consensus 358 l~~~l~~L~~L~L~~~~~~~~--~~~-~~~f~~Lk~L~L~~~~~~~-~--~~~~l~~lL~~~P~Le~L~ 420 (509)
++..+++|+.|.|+. ..+.. .+. ...+ +|++|.|..+.... . .......++..+|+|+.|+
T Consensus 191 ~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 191 IVQKAPNLKILNLSG-NELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHSTTCCEEECTT-SCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred HHhhCCCCCEEECCC-CccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 345688899999973 22211 111 3333 89999985543221 1 1123457899999999885
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=56.82 E-value=4.2 Score=40.30 Aligned_cols=113 Identities=13% Similarity=0.098 Sum_probs=54.2
Q ss_pred CccCcCCcEEEEeeEEEChhhHHHHHhCCccccceeeecccceeeEEEe----cccccceEEEEecccCccEEEE----E
Q 010478 241 LSGVKYLRSLRLFSVNVTGEILEFILHNCPLLDQLSVVRSETLVSLKVV----GSAIQLKHLRISTCYRLNEIKI----S 312 (509)
Q Consensus 241 ~~~~p~Lk~L~L~~v~~~~~~l~~lls~CP~Le~L~L~~c~~~~~l~i~----~~~~~Lk~L~l~~c~~l~~l~i----~ 312 (509)
+..+..|+.+.+....+.+.. +.+|..|+++.+..- ++ .|. ..|.+|+.+.+.. .++.+.- .
T Consensus 272 F~~~~~l~~~~~~~~~i~~~~----F~~~~~L~~i~l~~~--i~--~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~ 341 (394)
T 4fs7_A 272 FYNCSGLKKVIYGSVIVPEKT----FYGCSSLTEVKLLDS--VK--FIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRG 341 (394)
T ss_dssp TTTCTTCCEEEECSSEECTTT----TTTCTTCCEEEECTT--CC--EECTTTTTTCTTCCEECCCT--TCCEECTTTTTT
T ss_pred cccccccceeccCceeecccc----ccccccccccccccc--cc--eechhhhcCCCCCCEEEeCC--cccEEhHHhccC
Confidence 455666666666655554432 356777777766431 11 111 1234555554421 1122211 2
Q ss_pred CCceeEEEEecCCcc-ceeeecCCCCceEEEEEeccchhhhhhhcccccCCCCccEE
Q 010478 313 TPNLLSFKYFGPGQE-LKLHIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTL 368 (509)
Q Consensus 313 aP~L~~L~~~g~~~~-~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L 368 (509)
+.+|+++.+...... ..-.+.++++|+++.+..... ..++ -+..+.+|+.+
T Consensus 342 c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~~~~-~~~~----~F~~c~~L~~I 393 (394)
T 4fs7_A 342 CTSLSNINFPLSLRKIGANAFQGCINLKKVELPKRLE-QYRY----DFEDTTKFKWI 393 (394)
T ss_dssp CTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEGGGG-GGGG----GBCTTCEEEEE
T ss_pred CCCCCEEEECccccEehHHHhhCCCCCCEEEECCCCE-Ehhh----eecCCCCCcEE
Confidence 344555444322200 112478899999998864211 1122 23566766654
No 164
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=54.29 E-value=1.6 Score=41.15 Aligned_cols=40 Identities=23% Similarity=0.265 Sum_probs=27.2
Q ss_pred ccCcCCcEEEEeeEEECh-hhHHHHHhCCccccceeeeccc
Q 010478 242 SGVKYLRSLRLFSVNVTG-EILEFILHNCPLLDQLSVVRSE 281 (509)
Q Consensus 242 ~~~p~Lk~L~L~~v~~~~-~~l~~lls~CP~Le~L~L~~c~ 281 (509)
..+|+|+.|+|++-.+++ ..+..++..+|+|+.|+|++..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~ 207 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE 207 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc
Confidence 356788888887776655 2344556678888888887653
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=47.98 E-value=9.7 Score=33.94 Aligned_cols=126 Identities=13% Similarity=0.235 Sum_probs=77.9
Q ss_pred hhhhcccccCCCCccEEEEeechhh-----hhccC-CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEEee
Q 010478 352 RNVVGPITSCFPQLKTLELDSCDEL-----YAQFS-EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQFDY 425 (509)
Q Consensus 352 ~~~~~~l~~~l~~L~~L~L~~~~~~-----~~~~~-~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~~~ 425 (509)
+..+..++..-+.|++|.|.....+ ..... +..-..|++|+|..+..++.....++..|+.-..|+.|++....
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 3445566677788999999743122 11111 45567899999966554455556688899999999999997631
Q ss_pred cCCccCCccccCc--cccCCccEEEEec----ccCCccHHHHHHHHHhcCccCCcEEEEec
Q 010478 426 NGYKVGRRRKVPR--HSHQHLKLVELHG----FLGRPIDLELAFYILENAMTLEKMVVNRT 480 (509)
Q Consensus 426 ~~~~~~~~~~~p~--c~~~~Lk~V~i~~----f~g~~~e~~l~~~lL~na~~Le~m~I~~~ 480 (509)
-... + ...+-+ ..-+.|+++.+.+ .-|.+.+.++++.|-.| +.|.++.+...
T Consensus 110 Ig~~-G-a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N-~tL~~L~l~~~ 167 (197)
T 1pgv_A 110 LTPE-L-LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEEN-ESLLRVGISFA 167 (197)
T ss_dssp CCHH-H-HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHC-SSCCEEECCCC
T ss_pred CCHH-H-HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhC-CCcCeEeccCC
Confidence 1000 0 000000 1235689999864 33666677788777555 56888777543
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=38.35 E-value=8.1 Score=37.80 Aligned_cols=59 Identities=7% Similarity=0.108 Sum_probs=29.7
Q ss_pred ecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccCCCCCCcccEEEE
Q 010478 332 IENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFSEHELPNLTHLHL 393 (509)
Q Consensus 332 ~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~f~~Lk~L~L 393 (509)
+.++.+|+++.+...... ..-...+.+|.+|+.++|...........+..+.+|+.+.|
T Consensus 282 F~~c~~L~~i~l~~~~i~---~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIE---TLEPRVFMDCVKLSSVTLPTALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTTCTTCCEEEECCTTCC---EECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCCCCC
T ss_pred cccccccccccccccccc---eehhhhhcCCCCCCEEEcCccccEEHHHHhhCCCCCCEEEE
Confidence 556777777776531111 11112335677888887752110001111556677777766
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=37.07 E-value=12 Score=36.42 Aligned_cols=80 Identities=18% Similarity=0.225 Sum_probs=46.1
Q ss_pred eecCCCCceEEEEEeccchhhhhhhcccccCCCCccEEEEeechhhhhccC---CCCCCcccEEEEEeeccCccCHHHHH
Q 010478 331 HIENAPQLVDISFRGVMLTRVRNVVGPITSCFPQLKTLELDSCDELYAQFS---EHELPNLTHLHLRVATLNRESLLGLA 407 (509)
Q Consensus 331 ~~~~~~~L~~l~i~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~---~~~f~~Lk~L~L~~~~~~~~~~~~l~ 407 (509)
.+.++.+|+.+.+..... ..-...+.+|.+|+.+.+... .+ ..++ +..+.+|+.+.|-... ...+ .
T Consensus 258 aF~~~~~l~~i~l~~~i~----~i~~~aF~~c~~L~~i~l~~~-~i-~~I~~~aF~~c~~L~~i~lp~~l-~~I~----~ 326 (379)
T 4h09_A 258 LLQNCTALKTLNFYAKVK----TVPYLLCSGCSNLTKVVMDNS-AI-ETLEPRVFMDCVKLSSVTLPTAL-KTIQ----V 326 (379)
T ss_dssp TTTTCTTCCEEEECCCCS----EECTTTTTTCTTCCEEEECCT-TC-CEECTTTTTTCTTCCEEECCTTC-CEEC----T
T ss_pred ccceeehhccccccccce----ecccccccccccccccccccc-cc-ceehhhhhcCCCCCCEEEcCccc-cEEH----H
Confidence 356677788877754111 111133467899999998621 12 1111 6677889998882211 1111 1
Q ss_pred HHhhcCCCCcEEEE
Q 010478 408 SIMKACPFLQTLIV 421 (509)
Q Consensus 408 ~lL~~~P~Le~L~i 421 (509)
.-+..|.+|+++.|
T Consensus 327 ~aF~~C~~L~~i~i 340 (379)
T 4h09_A 327 YAFKNCKALSTISY 340 (379)
T ss_dssp TTTTTCTTCCCCCC
T ss_pred HHhhCCCCCCEEEE
Confidence 23578999998876
No 168
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=24.46 E-value=27 Score=25.20 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=18.9
Q ss_pred eccccccccchhhHHHHHHhhhe
Q 010478 36 TSETQPILSQHKLLRLVITVLHS 58 (509)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~ 58 (509)
+.+.+|+.+|..++++||+-+++
T Consensus 19 ~~~~dPL~EQ~~~I~~yI~qAk~ 41 (69)
T 1z0k_B 19 SEDSDPLLQQIHNITSFIRQAKA 41 (69)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHHHH
Confidence 45557999999999999987654
No 169
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=21.89 E-value=36 Score=30.18 Aligned_cols=67 Identities=12% Similarity=0.036 Sum_probs=41.0
Q ss_pred ccccCCCCccEEEEeechhhh---hccC--CCCCCcccEEEEEeeccCccCHHHHHHHhhcCCCCcEEEEEE
Q 010478 357 PITSCFPQLKTLELDSCDELY---AQFS--EHELPNLTHLHLRVATLNRESLLGLASIMKACPFLQTLIVQF 423 (509)
Q Consensus 357 ~l~~~l~~L~~L~L~~~~~~~---~~~~--~~~f~~Lk~L~L~~~~~~~~~~~~l~~lL~~~P~Le~L~i~~ 423 (509)
..+..-..|+.|.|..+.--. ..+. +..=..|++|+|..+.-+..+...+...|+.-..|+.|.++.
T Consensus 64 ~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 64 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 344455678888887432111 1111 334467899999666555455555666677777899988863
Done!