Query 010480
Match_columns 509
No_of_seqs 399 out of 2520
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 01:01:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1159 NADP-dependent flavopr 100.0 7.6E-96 2E-100 726.3 38.1 469 6-509 102-574 (574)
2 KOG1158 NADP/FAD dependent oxi 100.0 2.5E-91 5.5E-96 737.8 40.6 497 2-509 141-645 (645)
3 PRK10953 cysJ sulfite reductas 100.0 2E-84 4.4E-89 698.6 49.5 441 4-509 159-600 (600)
4 TIGR01931 cysJ sulfite reducta 100.0 4.5E-83 9.8E-88 691.9 48.7 439 5-509 157-597 (597)
5 COG0369 CysJ Sulfite reductase 100.0 2.4E-83 5.1E-88 679.6 44.8 441 5-509 146-587 (587)
6 cd06204 CYPOR NADPH cytochrome 100.0 1.1E-81 2.3E-86 656.1 46.3 393 107-509 3-416 (416)
7 cd06203 methionine_synthase_re 100.0 5.4E-80 1.2E-84 640.3 44.2 381 114-509 2-398 (398)
8 cd06207 CyPoR_like NADPH cytoc 100.0 1.2E-79 2.5E-84 635.9 44.0 378 114-509 2-382 (382)
9 cd06202 Nitric_oxide_synthase 100.0 8.1E-79 1.8E-83 632.6 45.9 386 114-509 2-402 (406)
10 cd06206 bifunctional_CYPOR The 100.0 1.3E-76 2.8E-81 613.6 44.2 375 113-509 1-384 (384)
11 cd06199 SiR Cytochrome p450- l 100.0 7.4E-74 1.6E-78 587.3 39.4 356 113-509 1-360 (360)
12 PRK06214 sulfite reductase; Pr 100.0 4.5E-73 9.8E-78 598.4 41.2 369 102-509 161-530 (530)
13 PF00667 FAD_binding_1: FAD bi 100.0 2.7E-49 5.8E-54 378.6 19.7 217 103-326 2-219 (219)
14 PLN03115 ferredoxin--NADP(+) r 100.0 1.7E-40 3.6E-45 337.4 27.0 272 104-509 85-367 (367)
15 cd06182 CYPOR_like NADPH cytoc 100.0 2.9E-38 6.2E-43 311.3 26.0 232 270-509 31-267 (267)
16 cd06200 SiR_like1 Cytochrome p 100.0 4.6E-36 9.9E-41 292.4 22.3 212 270-509 31-245 (245)
17 cd06201 SiR_like2 Cytochrome p 100.0 1.5E-34 3.2E-39 288.3 30.6 189 286-509 100-289 (289)
18 PLN03116 ferredoxin--NADP+ red 100.0 1.3E-35 2.8E-40 298.4 22.5 226 272-509 58-307 (307)
19 TIGR03224 benzo_boxA benzoyl-C 100.0 2.3E-34 4.9E-39 299.2 30.6 269 104-509 137-411 (411)
20 cd06208 CYPOR_like_FNR These f 100.0 3.5E-35 7.7E-40 292.7 22.8 226 271-509 41-286 (286)
21 cd06188 NADH_quinone_reductase 99.9 8.5E-27 1.8E-31 232.3 14.2 181 286-481 86-273 (283)
22 cd00322 FNR_like Ferredoxin re 99.9 1.4E-26 3.1E-31 222.2 14.3 188 270-480 22-214 (223)
23 PRK10926 ferredoxin-NADP reduc 99.9 1.5E-26 3.2E-31 226.0 14.1 186 271-479 31-228 (248)
24 cd06189 flavin_oxioreductase N 99.9 2.6E-26 5.7E-31 221.0 14.8 185 269-480 24-213 (224)
25 PRK08051 fre FMN reductase; Va 99.9 1.6E-26 3.5E-31 223.6 12.5 184 270-480 29-218 (232)
26 cd06195 FNR1 Ferredoxin-NADP+ 99.9 3.9E-26 8.4E-31 222.3 14.7 189 271-482 25-226 (241)
27 cd06211 phenol_2-monooxygenase 99.9 2.5E-26 5.4E-31 223.2 13.3 186 270-481 35-228 (238)
28 PRK07609 CDP-6-deoxy-delta-3,4 99.9 2.8E-26 6E-31 234.5 14.2 184 271-480 132-321 (339)
29 PRK11872 antC anthranilate dio 99.9 3.8E-26 8.2E-31 233.1 13.8 183 270-481 136-325 (340)
30 cd06190 T4MO_e_transfer_like T 99.9 5.2E-26 1.1E-30 220.1 14.0 188 270-480 23-219 (232)
31 PRK05464 Na(+)-translocating N 99.9 5.6E-26 1.2E-30 237.4 14.7 182 284-480 208-396 (409)
32 PRK10684 HCP oxidoreductase, N 99.9 6.7E-26 1.5E-30 230.8 14.1 185 271-480 37-226 (332)
33 cd06210 MMO_FAD_NAD_binding Me 99.9 4.6E-26 9.9E-31 221.0 12.2 185 270-480 34-224 (236)
34 TIGR01941 nqrF NADH:ubiquinone 99.9 8E-26 1.7E-30 236.0 14.5 181 285-480 205-392 (405)
35 PRK13289 bifunctional nitric o 99.9 8.8E-26 1.9E-30 235.9 14.7 186 270-480 184-381 (399)
36 cd06209 BenDO_FAD_NAD Benzoate 99.9 1.2E-25 2.6E-30 217.0 14.4 182 270-480 30-216 (228)
37 PRK08345 cytochrome-c3 hydroge 99.9 1.1E-25 2.4E-30 224.6 13.8 181 271-480 38-235 (289)
38 cd06187 O2ase_reductase_like T 99.9 1.1E-25 2.4E-30 216.6 12.8 183 271-480 24-213 (224)
39 cd06212 monooxygenase_like The 99.9 2.4E-25 5.3E-30 215.4 14.4 185 270-481 29-221 (232)
40 cd06191 FNR_iron_sulfur_bindin 99.9 1.8E-25 3.8E-30 216.3 13.2 181 271-480 28-220 (231)
41 PRK05713 hypothetical protein; 99.9 2.1E-25 4.6E-30 225.1 13.1 177 271-480 119-297 (312)
42 cd06194 FNR_N-term_Iron_sulfur 99.9 1.2E-24 2.6E-29 209.1 16.0 185 270-480 23-210 (222)
43 cd06213 oxygenase_e_transfer_s 99.9 8.1E-25 1.8E-29 211.1 14.1 181 271-480 28-216 (227)
44 cd06221 sulfite_reductase_like 99.9 1.6E-24 3.6E-29 212.2 13.9 184 269-481 26-214 (253)
45 cd06184 flavohem_like_fad_nad_ 99.9 2.5E-24 5.5E-29 210.3 13.9 182 270-480 36-232 (247)
46 cd06215 FNR_iron_sulfur_bindin 99.9 3.1E-24 6.6E-29 207.5 14.4 187 270-480 27-220 (231)
47 PTZ00274 cytochrome b5 reducta 99.9 1.6E-24 3.5E-29 218.1 12.3 185 270-475 81-281 (325)
48 cd06216 FNR_iron_sulfur_bindin 99.9 2E-24 4.4E-29 210.5 12.5 184 271-482 46-235 (243)
49 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 2.8E-24 6E-29 220.9 13.6 190 270-481 32-231 (352)
50 COG1018 Hmp Flavodoxin reducta 99.9 9.7E-24 2.1E-28 206.3 15.4 182 271-482 35-221 (266)
51 cd06196 FNR_like_1 Ferredoxin 99.9 4.4E-24 9.5E-29 204.6 12.0 178 270-480 27-209 (218)
52 cd06198 FNR_like_3 NAD(P) bind 99.9 6E-24 1.3E-28 203.4 12.0 179 270-480 22-204 (216)
53 cd06217 FNR_iron_sulfur_bindin 99.9 6.9E-24 1.5E-28 205.5 12.5 185 271-480 31-224 (235)
54 PRK08221 anaerobic sulfite red 99.9 7.8E-24 1.7E-28 208.4 11.9 178 271-480 33-215 (263)
55 cd06214 PA_degradation_oxidore 99.9 1.8E-23 3.8E-28 203.5 14.0 186 270-480 32-229 (241)
56 cd06218 DHOD_e_trans FAD/NAD b 99.9 2.4E-23 5.3E-28 203.1 14.0 174 270-481 24-204 (246)
57 cd06183 cyt_b5_reduct_like Cyt 99.9 2.4E-23 5.3E-28 201.5 13.6 187 270-480 28-225 (234)
58 TIGR02911 sulfite_red_B sulfit 99.9 3E-23 6.6E-28 204.0 12.7 178 271-480 31-213 (261)
59 PTZ00319 NADH-cytochrome B5 re 99.9 4.2E-23 9.1E-28 206.8 13.4 194 271-480 64-291 (300)
60 cd06185 PDR_like Phthalate dio 99.9 1.1E-22 2.3E-27 193.9 14.1 176 270-481 25-200 (211)
61 COG2871 NqrF Na+-transporting 99.9 6E-23 1.3E-27 193.0 11.0 186 285-485 210-402 (410)
62 cd06197 FNR_like_2 FAD/NAD(P) 99.9 1.1E-22 2.5E-27 195.0 12.4 162 271-478 26-211 (220)
63 COG0543 UbiB 2-polyprenylpheno 99.9 5.1E-22 1.1E-26 193.9 14.6 180 270-481 35-216 (252)
64 PRK00054 dihydroorotate dehydr 99.9 3.7E-22 8E-27 195.3 12.5 168 270-480 31-204 (250)
65 cd06220 DHOD_e_trans_like2 FAD 99.9 7.2E-22 1.6E-26 191.2 13.3 167 270-481 23-191 (233)
66 cd06192 DHOD_e_trans_like FAD/ 99.9 9.5E-22 2.1E-26 191.7 13.0 172 271-480 25-201 (243)
67 cd06219 DHOD_e_trans_like1 FAD 99.9 9.2E-22 2E-26 192.3 12.5 173 270-479 26-202 (248)
68 PRK06222 ferredoxin-NADP(+) re 99.9 6.7E-22 1.4E-26 196.6 11.5 173 271-480 28-204 (281)
69 PLN02252 nitrate reductase [NA 99.9 1.3E-21 2.7E-26 219.1 13.0 195 271-480 665-879 (888)
70 KOG0534 NADH-cytochrome b-5 re 99.9 5E-21 1.1E-25 186.0 14.6 183 270-479 81-276 (286)
71 PRK05802 hypothetical protein; 99.9 1.6E-21 3.4E-26 196.6 10.3 169 272-479 96-276 (320)
72 COG4097 Predicted ferric reduc 99.8 7.3E-21 1.6E-25 185.7 11.6 176 273-481 245-425 (438)
73 PTZ00306 NADH-dependent fumara 99.8 1.7E-20 3.7E-25 218.2 11.7 187 271-480 948-1152(1167)
74 PRK12778 putative bifunctional 99.8 5.2E-19 1.1E-23 198.6 12.1 173 271-480 28-204 (752)
75 PF00175 NAD_binding_1: Oxidor 99.8 8.5E-19 1.8E-23 148.9 8.1 104 363-474 1-109 (109)
76 cd06193 siderophore_interactin 99.8 7E-19 1.5E-23 170.5 8.6 171 271-479 27-220 (235)
77 cd06186 NOX_Duox_like_FAD_NADP 99.8 3.9E-18 8.4E-23 162.4 12.3 169 270-478 24-197 (210)
78 PRK12779 putative bifunctional 99.7 1E-17 2.2E-22 190.1 14.2 183 271-480 677-870 (944)
79 PRK12775 putative trifunctiona 99.7 1.5E-16 3.3E-21 182.2 12.4 172 271-480 28-204 (1006)
80 PLN02292 ferric-chelate reduct 99.6 2.1E-14 4.4E-19 156.7 13.7 178 271-465 352-546 (702)
81 PLN02844 oxidoreductase/ferric 99.5 4.5E-14 9.7E-19 154.5 12.5 182 270-465 338-535 (722)
82 PLN02631 ferric-chelate reduct 99.5 3.1E-14 6.7E-19 155.0 10.5 149 269-433 333-492 (699)
83 KOG3378 Globins and related he 99.3 2.3E-13 5.1E-18 127.8 2.0 182 268-483 178-372 (385)
84 PF08030 NAD_binding_6: Ferric 98.9 2.8E-09 6.1E-14 96.4 6.9 71 360-431 3-77 (156)
85 PRK05723 flavodoxin; Provision 98.8 1.5E-09 3.2E-14 97.5 3.2 49 5-55 100-150 (151)
86 KOG0039 Ferric reductase, NADH 98.6 3.8E-07 8.1E-12 100.4 11.9 192 273-480 384-632 (646)
87 PRK09004 FMN-binding protein M 98.5 4.4E-08 9.5E-13 87.6 2.8 49 4-54 96-146 (146)
88 PRK08105 flavodoxin; Provision 98.5 8E-08 1.7E-12 86.2 3.1 49 4-55 98-148 (149)
89 PRK06567 putative bifunctional 98.3 1.5E-06 3.4E-11 97.6 8.9 83 271-373 819-908 (1028)
90 PF00970 FAD_binding_6: Oxidor 97.9 3.5E-06 7.5E-11 70.0 1.4 67 270-352 29-98 (99)
91 COG2375 ViuB Siderophore-inter 95.7 0.1 2.2E-06 50.8 10.7 171 284-496 85-258 (265)
92 KOG1160 Fe-S oxidoreductase [E 95.4 0.0094 2E-07 60.8 2.6 47 5-56 148-194 (601)
93 KOG0560 Sulfite reductase (fer 92.6 0.066 1.4E-06 55.4 2.0 53 4-58 16-70 (638)
94 cd06182 CYPOR_like NADPH cytoc 92.3 0.17 3.6E-06 50.0 4.5 42 114-155 2-44 (267)
95 PF00258 Flavodoxin_1: Flavodo 88.6 0.33 7.1E-06 42.7 2.5 27 11-37 106-132 (143)
96 PLN03116 ferredoxin--NADP+ red 82.4 2.8 6E-05 42.2 6.1 49 106-155 21-69 (307)
97 cd06208 CYPOR_like_FNR These f 80.1 3.9 8.4E-05 40.7 6.1 48 106-154 5-52 (286)
98 PF08022 FAD_binding_8: FAD-bi 79.8 0.57 1.2E-05 39.1 0.0 50 269-331 28-82 (105)
99 PRK07308 flavodoxin; Validated 77.9 1.5 3.2E-05 38.9 2.1 31 4-36 96-126 (146)
100 PF08021 FAD_binding_9: Sidero 70.0 3 6.4E-05 35.6 1.9 53 284-351 65-117 (117)
101 PRK06703 flavodoxin; Provision 70.0 4.9 0.00011 35.7 3.4 49 5-55 97-148 (151)
102 COG0716 FldA Flavodoxins [Ener 61.8 7.5 0.00016 34.6 3.0 47 5-53 98-150 (151)
103 PF00970 FAD_binding_6: Oxidor 60.0 24 0.00052 28.5 5.5 38 112-154 2-41 (99)
104 TIGR01753 flav_short flavodoxi 57.6 7.4 0.00016 33.6 2.2 24 6-31 95-118 (140)
105 PRK09271 flavodoxin; Provision 56.1 8.6 0.00019 34.6 2.4 43 5-54 102-147 (160)
106 cd06200 SiR_like1 Cytochrome p 51.9 25 0.00053 34.0 5.0 38 118-155 6-44 (245)
107 cd06212 monooxygenase_like The 46.4 39 0.00086 32.0 5.4 40 111-155 2-42 (232)
108 PF11798 IMS_HHH: IMS family H 42.8 16 0.00036 23.3 1.4 14 10-23 18-31 (32)
109 TIGR00333 nrdI ribonucleoside- 40.1 9.1 0.0002 33.1 -0.1 47 4-52 78-124 (125)
110 TIGR01754 flav_RNR ribonucleot 39.5 19 0.00042 31.4 1.9 16 5-22 98-113 (140)
111 cd06217 FNR_iron_sulfur_bindin 38.7 56 0.0012 30.9 5.2 40 111-155 3-43 (235)
112 PF11132 SplA: Transcriptional 37.2 23 0.00051 27.2 1.7 16 142-157 5-20 (75)
113 cd06196 FNR_like_1 Ferredoxin 34.6 65 0.0014 30.1 4.8 40 111-156 2-41 (218)
114 cd06209 BenDO_FAD_NAD Benzoate 33.5 88 0.0019 29.5 5.6 41 110-155 2-43 (228)
115 cd06184 flavohem_like_fad_nad_ 33.3 1.1E+02 0.0023 29.4 6.2 42 110-156 7-50 (247)
116 cd06211 phenol_2-monooxygenase 33.1 91 0.002 29.7 5.6 42 109-155 6-48 (238)
117 PRK00054 dihydroorotate dehydr 32.5 87 0.0019 30.2 5.4 41 110-156 5-45 (250)
118 COG3937 Uncharacterized conser 32.4 40 0.00087 28.1 2.5 38 466-503 19-56 (108)
119 cd06213 oxygenase_e_transfer_s 32.0 89 0.0019 29.5 5.4 39 111-155 2-40 (227)
120 PRK06756 flavodoxin; Provision 31.0 39 0.00084 29.7 2.5 39 5-46 98-136 (148)
121 PF04954 SIP: Siderophore-inte 30.1 1.3E+02 0.0028 25.4 5.5 98 360-479 3-102 (119)
122 KOG3363 Uncharacterized conser 29.5 75 0.0016 28.6 3.8 48 458-506 115-166 (196)
123 PF04703 FaeA: FaeA-like prote 28.8 1.2E+02 0.0027 22.6 4.4 23 484-506 25-47 (62)
124 cd06214 PA_degradation_oxidore 28.6 70 0.0015 30.4 4.0 39 111-154 3-44 (241)
125 TIGR01752 flav_long flavodoxin 28.5 58 0.0013 29.4 3.2 24 5-30 95-118 (167)
126 PF02080 TrkA_C: TrkA-C domain 28.1 73 0.0016 23.7 3.3 30 137-168 42-71 (71)
127 cd06189 flavin_oxioreductase N 26.5 1.1E+02 0.0023 28.8 4.8 37 113-155 2-38 (224)
128 PRK06928 pyrroline-5-carboxyla 26.3 1.1E+02 0.0025 30.0 5.1 41 459-499 169-209 (277)
129 PRK07609 CDP-6-deoxy-delta-3,4 26.0 1.4E+02 0.003 30.3 5.8 42 109-155 102-144 (339)
130 COG0279 GmhA Phosphoheptose is 25.9 99 0.0021 28.1 4.0 26 440-465 25-50 (176)
131 COG5653 Protein involved in ce 25.5 48 0.001 34.4 2.2 39 13-51 203-241 (406)
132 PRK08051 fre FMN reductase; Va 24.5 1.5E+02 0.0033 28.1 5.5 38 110-153 3-40 (232)
133 cd06216 FNR_iron_sulfur_bindin 23.8 1.4E+02 0.003 28.4 5.1 40 110-154 18-57 (243)
134 PF06753 Bradykinin: Bradykini 22.8 26 0.00057 19.1 -0.1 9 368-376 6-14 (19)
135 PF14748 P5CR_dimer: Pyrroline 21.8 1.3E+02 0.0028 25.0 3.8 37 461-498 12-48 (107)
136 cd06210 MMO_FAD_NAD_binding Me 21.7 1.9E+02 0.0041 27.3 5.6 40 111-155 3-47 (236)
137 PRK10684 HCP oxidoreductase, N 21.5 1.7E+02 0.0037 29.6 5.4 43 108-156 8-50 (332)
138 PF09921 DUF2153: Uncharacteri 21.0 1.4E+02 0.0031 25.5 3.9 52 451-504 51-105 (126)
139 PF11074 DUF2779: Domain of un 20.9 94 0.002 27.0 2.9 52 214-267 55-116 (130)
140 cd06218 DHOD_e_trans FAD/NAD b 20.8 1.1E+02 0.0023 29.6 3.6 28 128-155 10-37 (246)
141 KOG4723 Uncharacterized conser 20.8 1.2E+02 0.0027 28.4 3.7 114 389-509 17-139 (248)
142 PRK12446 undecaprenyldiphospho 20.4 1.1E+02 0.0023 31.4 3.7 23 360-382 3-27 (352)
No 1
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=100.00 E-value=7.6e-96 Score=726.31 Aligned_cols=469 Identities=33% Similarity=0.592 Sum_probs=402.4
Q ss_pred cccCCcchhHHHHHhhcCCeecccCcccCCCC--CchhhHHHHHHHHHHHHHhhhCCCCCCCCCCCCCcccccceEEEEe
Q 010480 6 FLSAGINESLFSLLPFAGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFY 83 (509)
Q Consensus 6 f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~--~~e~~f~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (509)
|+.|+ |||++||.+|||+.++++|+|||++ |+|++|.+|..+||..|..+++...+....+.. ......+++...
T Consensus 102 fNy~a--KKL~~RL~qLGA~~~~~~glgDdQh~~G~eg~~~pW~~~lw~~L~~i~~p~~~~t~l~~~-~~~~~k~~~l~~ 178 (574)
T KOG1159|consen 102 FNYAA--KKLHRRLRQLGANSVCPRGLGDDQHEEGIEGVFDPWLKELWSYLKGIYPPYRPETDLIPT-VQITTKYSLLEL 178 (574)
T ss_pred hhHHH--HHHHHHHHHhCcccccccccccccccccchhhhHHHHHHHHHHHHhhcCCCCCcccCCCc-ccccchhhhhhc
Confidence 88888 9999999999999999999999986 999999999999999999887622221111111 122333443332
Q ss_pred cCCCccccccccCCCCCCCcccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHH
Q 010480 84 DNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEA 163 (509)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~ 163 (509)
..... .+ ........+....++++.|+++|+.+|+|+|||++|+++++.+.|+|||++.|+|.|+++.|+++
T Consensus 179 ~~~~~------~~--d~~~v~~~~~~~~~k~~~N~rlT~~~HfQDVR~~~F~i~~s~~~~epGDvl~l~P~N~de~V~~F 250 (574)
T KOG1159|consen 179 GKASD------FS--DSDIVLEPQGQIPAKLVENRRLTSADHFQDVRLFEFDIPDSYEEFEPGDVLSLLPSNSDETVQRF 250 (574)
T ss_pred ccccc------CC--cchhhhccccccccchhcceeecCcchhheeeEEEEecCCccccccCCCEEEEecCCchHHHHHH
Confidence 21100 00 00111111222237999999999999999999999999988999999999999999999999999
Q ss_pred HHHhCCCCCcEEEEecCCCCCCCCCCCCCCCCCC-cccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCc
Q 010480 164 LSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASP 242 (509)
Q Consensus 164 l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~ 242 (509)
++.+||++++...+.....+ ..+..| .+| |+|+++++++|+|++++|+++||+.|++|++|+.|||+|++++|+
T Consensus 251 ie~~gl~~~~~~~l~~~s~~----~~~~~~-~~~~p~sl~~~lk~~~D~~SvPrrsFFe~l~~~s~~~~EkEkL~efas~ 325 (574)
T KOG1159|consen 251 IEYLGLDEDQLKPLKISSND----RSSPLP-LLPNPLSLLNLLKYVLDFNSVPRRSFFEMLAHFSTDEMEKEKLQEFASA 325 (574)
T ss_pred HHHcCCChhhccccccccCc----cccccc-ccCCchhHHHHHHHhcccccCcchHHHHHHHHHccChHHHHHHHHhccc
Confidence 99999999876655533221 112223 477 999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHhcCCCHHHHHhhCCCCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCc
Q 010480 243 AGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGL 322 (509)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~dvl~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~ 322 (509)
+|.++|++|+.+++||++|||++|+|+++|+++++++ +|.++||+|||||+|..+ .++|+|++|.|.|...+.|.|+
T Consensus 326 qg~ddl~dY~nRpRRtilEvLeDF~sv~lp~~yl~d~-~P~IrPR~fSIas~~~~~--~leL~VAiV~ykT~l~~pRrGl 402 (574)
T KOG1159|consen 326 QGIDDLYDYVNRPRRTILEVLEDFRSVKLPIDYLLDL-LPVIRPRAFSIASSPGAH--HLELLVAIVEYKTILKEPRRGL 402 (574)
T ss_pred cchHHHHHHhcchhhhHHHHHHhchhccCCHHHHHHh-ccccccceeeeccCCCCC--ceeEEEEEEEEeeeccccccch
Confidence 9999999999999999999999999999999999987 599999999999999864 4999999999999999999999
Q ss_pred CchhhhhcCCCccCCCCceeeEEEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCC
Q 010480 323 CSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNR 402 (509)
Q Consensus 323 ~S~~L~~~~~~~~~~~~~~v~v~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~ 402 (509)
||+||+++.+++. +++.++.|.+.+|.+.+.|+||||+|||||||||+++++..++. ....||||||++
T Consensus 403 CS~wl~sL~~g~~------i~~~v~~g~l~~p~~~~~PlImVGPGTGvAPfRa~i~er~~q~~-----~~~~lFfGCR~K 471 (574)
T KOG1159|consen 403 CSNWLASLKPGDE------IPIKVRPGTLYFPSDLNKPLIMVGPGTGVAPFRALIQERIYQGD-----KENVLFFGCRNK 471 (574)
T ss_pred hHHHHhhcCCCCe------EEEEEecCccccCCCCCCCeEEEcCCCCcccHHHHHHHHHhhcc-----CCceEEEecccC
Confidence 9999999998764 78999999999998889999999999999999999999987542 456999999999
Q ss_pred CCccccHHHHHHHHHcCCcCeEEEEEecCCCCcccchhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHH
Q 010480 403 KMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQ 481 (509)
Q Consensus 403 ~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~~~~yvq~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 481 (509)
+.||+|.+||.++...+ .+.|||||++.|.||||.|++.++.+|+++ +.++.|||||++..|..+|.++|.+|..
T Consensus 472 ~~Df~y~~eW~~~~~~~----~~~AFSRDqe~kvYVQh~i~e~g~~v~~Ll~~~gA~~fvaGsS~~MP~~V~~al~eI~~ 547 (574)
T KOG1159|consen 472 DKDFLYEDEWTELNKRA----FHTAFSRDQEQKVYVQHKIRENGEEVWDLLDNLGAYFFVAGSSGKMPKDVKEALIEIVG 547 (574)
T ss_pred Cccccccchhhhhhcch----hhhhcccccccceeHHHHHHHhhHHHHHHHhccCCEEEEecCCCCCcHHHHHHHHHHhh
Confidence 99999999999887664 345999999999999999999999999988 4899999999998999999999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 482 EQGSLDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 482 ~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
++++.+.|.|. |++.|++.+||+.|+|
T Consensus 548 ~e~g~~~e~a~-~l~~lekt~ryq~ETW 574 (574)
T KOG1159|consen 548 KEGGFSKEVAS-YLKALEKTRRYQQETW 574 (574)
T ss_pred hhcCCChHHHH-HHHHHHHhccccccCC
Confidence 99999877777 9999999999999999
No 2
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=2.5e-91 Score=737.80 Aligned_cols=497 Identities=45% Similarity=0.765 Sum_probs=419.7
Q ss_pred cccccccCCcchhHHHHHhhcCCeecccCcccCCCCCchhhHHHHHHHHHHHHHhhhCCCCCCCCCCCCCcccccceEEE
Q 010480 2 TTFGFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVV 81 (509)
Q Consensus 2 ~~~~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~~~e~~f~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (509)
+..|||++| +.+|++|++|||+|++..|+|||+.++|++|..|++.+|+++++.+..+......+.. ........
T Consensus 141 ~y~~f~~~a--~~~d~~l~~lg~~rl~~~glgdd~~~~e~~f~~w~~~~~~~~~~~f~~~~~~~~~~~~---~~~~~~~~ 215 (645)
T KOG1158|consen 141 TYEHFNAFA--KLVDNLLEELGANRLFQLGLGDDDAGLEEDFRTWKKPLLPELCETFSLEEDEATKEDE---TIRQYRTW 215 (645)
T ss_pred chhhhHHHH--HHHHHHHHHhhhhhhhccccccccccchhHHHHHHHHHhHhhhheeeeccccccCCcc---cccccccC
Confidence 357999999 7799999999999999999999999999999999999999999887644221000000 00000000
Q ss_pred EecCCCccccc--cccCCCCCCCcccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHH
Q 010480 82 FYDNADASVGE--KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSET 159 (509)
Q Consensus 82 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~ 159 (509)
........... ..........+.+..+|+.+.++.++.|..+.+.++++|++++..+++++|+||||++|+|+|+.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~e~~~~~~~~~Y~~GD~~gv~p~N~~~~ 295 (645)
T KOG1158|consen 216 TPNDPPFVPQAFPPELLNLLSSTPFDKVFPFPALVVVNLALSTPSSDRSCIHLELDIYGPGLRYEPGDHFGVLPPNSDEL 295 (645)
T ss_pred cCccccccccccCccccccccCCcchhcccchhhhhHHhhccCCCCceEEEEEEeecCCcccccccCCeeeecCCCCHHH
Confidence 00000000000 0000111223445678889999999999988899999999999988899999999999999999999
Q ss_pred HHHHHHHhCCCCCcEEEEecCCCCCCCCCCCCCCCCCC-cccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHH
Q 010480 160 VEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRH 238 (509)
Q Consensus 160 V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~ 238 (509)
|+.++++|+++++..+.++....+.+.......+.|++ |+|++++|++|+||+++|++++++.||+||+|+.||++|+.
T Consensus 296 V~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~~~~l~~~ldi~~~P~k~ll~~La~~a~d~~Eke~L~~ 375 (645)
T KOG1158|consen 296 VDELLERLGLNPDTDFSLQLELETDTNPTPAKKPHPFPLPTTLRTALTHYLDITGPPKKQLLRLLAEYATDPAEKERLEI 375 (645)
T ss_pred HHHHHHHhcCCCccceEEEEeecCCCCCCccccCCCCCCCCcHHHHHHHhccccCCCcHHHHHHHHHhcCCchHHHHHHH
Confidence 99999999999876666554333211011245677888 99999999999999999999999999999999999999999
Q ss_pred hcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCC-c
Q 010480 239 LASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTG-R 317 (509)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~-~ 317 (509)
|++++|..+|..|+....+|++|||++||++++|+.+++++ +|.++||+|||||||..+++++++++.++.+.++.| +
T Consensus 376 L~s~~g~~~y~~~~~~~~~tl~dVl~~fps~kpP~~~ll~~-lp~L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~ 454 (645)
T KOG1158|consen 376 LSSKQGAEEYPRWVRQSCLTLLDVLEAFPSCKPPLPHLLEL-LPRLQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGP 454 (645)
T ss_pred HhCccchhhHhHHHhcccccHHHHHhhCCCCCCCHHHHHHh-CccccccccccccCcccCCCEEEEEEEEeeeccCCCCC
Confidence 99999999999999999999999999999999999999987 599999999999999999999999999998888775 7
Q ss_pred cccCcCchhhhhcCCCccCCCCceeeEEEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcC--CCCCeEE
Q 010480 318 VHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGA--ELGPSLL 395 (509)
Q Consensus 318 ~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~--~~~~~~L 395 (509)
.+.|+||+||.++.+++... .++.++...|++|.|+.+|+||||+||||||||||+|++..+++.+. ..+ +||
T Consensus 455 ~r~GVcS~~L~~l~~~~~~~----~~~~~~~s~frlp~dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~-~~L 529 (645)
T KOG1158|consen 455 KRYGVCSNWLSNLKPGEKVP----NPVPVGKSMFRLPSDPSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGG-MWL 529 (645)
T ss_pred ccceehhhhHHhcCCccccC----cceeecccceecCCCCCCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcc-eEE
Confidence 77899999999998876631 13556678999999999999999999999999999999998876553 224 899
Q ss_pred EEeccCCCCccccHHHHHHHHHcCCcCeEEEEEecCC-CCcccchhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHH
Q 010480 396 FFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG-PTKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVH 473 (509)
Q Consensus 396 ~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~-~~~~yvq~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~ 473 (509)
|||||+.+.|++|++||+++.+.+.++++..||||++ +.+.||||++++.++.||++| .++++|||||++++|+++|.
T Consensus 530 f~GcR~~~~d~LY~eE~~~~~~~~~l~~l~~A~SReq~~~k~YVQd~l~e~~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~ 609 (645)
T KOG1158|consen 530 FFGCRNSDEDYLYREEWEEYKKAGILTRLDVAFSREQTPKKIYVQDRLREYADEVWELLKKEGGHIYVCGDAKGMAKDVQ 609 (645)
T ss_pred EEeCCCchHHHHHHHHHHHHHhcCcchhheeeeeccCCCCceehhhHHHHHHHHHHHHHhcCCcEEEEecCCccchHHHH
Confidence 9999999999999999999999999999999999998 789999999999999999998 56999999999766999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 474 RTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 474 ~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
++|.+|+.+.+++++++|.+++++|++++||++|||
T Consensus 610 ~~L~~i~~~~g~~~~~ea~~~lk~lk~~~Ry~~DVw 645 (645)
T KOG1158|consen 610 DALVRILAKDGGLSEEEAEKYLKQLKKSKRYIEDVW 645 (645)
T ss_pred HHHHHHHHhhCCccHHHHHHHHHHhhhccccccccC
Confidence 999999999999999999999999999999999999
No 3
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=100.00 E-value=2e-84 Score=698.64 Aligned_cols=441 Identities=30% Similarity=0.510 Sum_probs=377.2
Q ss_pred cccccCCcchhHHHHHhhcCCeecccCcccCCCCCchhhHHHHHHHHHHHHHhhhCCCCCCCCCCCCCcccccceEEEEe
Q 010480 4 FGFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFY 83 (509)
Q Consensus 4 ~~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~~~e~~f~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (509)
-+||+|| |+||+||++|||+|++++|.+|. ++|++|++|++++|++|.+.++.... +... .. .
T Consensus 159 ~~Fc~~~--k~ld~rL~~lGA~rl~~~~d~D~--~~e~~~~~W~~~~~~~l~~~~~~~~~----~~~~---~~------~ 221 (600)
T PRK10953 159 EFFCQAG--KDFDSKLAELGAERLLDRVDADV--EYQAAASEWRARVVDALKSRAPAVAA----PSQS---VA------T 221 (600)
T ss_pred HHHHHHH--HHHHHHHHHCCCeEeeccccccc--ccHHHHHHHHHHHHHHHHhhcCCccc----cccc---cc------c
Confidence 4799999 99999999999999999986664 58999999999999999876532100 0000 00 0
Q ss_pred cCCCccccccccCCCCCCCcccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHH
Q 010480 84 DNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEA 163 (509)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~ 163 (509)
.... ......++..+|+.|+|++|++||.++++|+||||+|++++++++|+|||+|+|+|.|++++|+++
T Consensus 222 ~~~~----------~~~~~~~~~~~p~~a~v~~n~~Lt~~~~~k~~rhie~dl~~~~l~Y~~GD~lgV~P~N~~~~V~~~ 291 (600)
T PRK10953 222 GAVN----------EIHTSPYSKEAPLTASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKEL 291 (600)
T ss_pred cccc----------ccccCCCCCCCCeEEEEEEEeecCCCCCCceEEEEEEecCCCCCcccCCCEEEEEcCCCHHHHHHH
Confidence 0000 000123556789999999999999999999999999999888999999999999999999999999
Q ss_pred HHHhCCCCCcEEEEecCCCCCCCCCCCCCCCCCCcccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCcc
Q 010480 164 LSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPA 243 (509)
Q Consensus 164 l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~ 243 (509)
|++||+++++.+.+. + .++|++++|++|+||+.+ ++.+|+.++.++.++. |+++.+
T Consensus 292 l~~l~l~~~~~v~~~-----~------------~~~tl~~~l~~~~dl~~~-~~~~l~~~a~~~~~~~----l~~~~~-- 347 (600)
T PRK10953 292 VELLWLKGDEPVTVD-----G------------KTLPLAEALQWHFELTVN-TANIVENYATLTRSET----LLPLVG-- 347 (600)
T ss_pred HHHhCCCCCCeEEeC-----C------------CCCCHHHHHHHhcccCCC-cHHHHHHHHHhCCCHH----HHHHhc--
Confidence 999999999988764 1 146899999999999975 7799999999998754 444443
Q ss_pred CHHHHHHHHHhcCCCHHHHHhhCCCCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcC
Q 010480 244 GKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLC 323 (509)
Q Consensus 244 ~~~~~~~~~~~~~~~~~dvl~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~ 323 (509)
+++.+.+|+. +++++|||++|| ++++++||+++ +|+++||+|||||+|...+++++|+|+++.+.. .++.+.|.|
T Consensus 348 ~~~~~~~~~~--~~~~~dvL~~f~-~~~~~~q~l~l-l~~l~pR~YSIaSsp~~~~~~v~ltv~~v~~~~-~g~~~~G~~ 422 (600)
T PRK10953 348 DKAALQHYAA--TTPIVDMVRFAP-AQLDAEQLIGL-LRPLTPRLYSIASSQAEVENEVHITVGVVRYDI-EGRARAGGA 422 (600)
T ss_pred CHHHHHHHhc--CCCHHHHHHhCC-CCCCHHHHHHh-CCCCCCeeeecccCCCCCCCeEEEEEEEEEeec-CCCCcCceE
Confidence 5567778864 689999999998 68999999986 499999999999999877899999999987763 577889999
Q ss_pred chhhhhcCCCccCCCCceeeEEEec-CCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCC
Q 010480 324 STWMKNSLPMEKSNDCSWAPIFVRQ-SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNR 402 (509)
Q Consensus 324 S~~L~~~~~~~~~~~~~~v~v~~~~-g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~ 402 (509)
|+||.+..+.|+ .++|+++. +.|++|.++.+|+||||+||||||||||++++...+. .++++||||||+.
T Consensus 423 S~~L~~~l~~Gd-----~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~----~~~~~LffG~R~~ 493 (600)
T PRK10953 423 SSFLADRLEEEG-----EVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGA----PGKNWLFFGNPHF 493 (600)
T ss_pred hhhhhhcCCCCC-----EEEEEeccCCcccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHcCC----CCCeEEEeeccCC
Confidence 999997444443 47888865 6899998888999999999999999999999876432 3789999999996
Q ss_pred CCccccHHHHHHHHHcCCcCeEEEEEecCCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHH
Q 010480 403 KMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQE 482 (509)
Q Consensus 403 ~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~~ 482 (509)
..|++|++||++|.+.|.+++++.+|||++.+|+||||+|.++.+.+++++.++++||||||++.|+++|.++|.+|+.+
T Consensus 494 ~~D~lY~~El~~~~~~g~l~~l~~afSRd~~~k~YVQ~~l~e~~~~l~~~l~~ga~~YVCG~~~~M~~~V~~~L~~i~~~ 573 (600)
T PRK10953 494 TEDFLYQVEWQRYVKEGLLTRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAE 573 (600)
T ss_pred ccchhHHHHHHHHHHcCCcceEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHCCcEEEEECCCccchHHHHHHHHHHHHH
Confidence 66999999999999999998899999999888999999999999999999988999999999668999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 483 QGSLDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 483 ~~~~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
++++++++|++|+++|+++|||++|||
T Consensus 574 ~g~~~~e~A~~~l~~l~~~~RY~~Dvy 600 (600)
T PRK10953 574 FGGMDTEAADEFLSELRVERRYQRDVY 600 (600)
T ss_pred cCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 999999999999999999999999999
No 4
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=100.00 E-value=4.5e-83 Score=691.95 Aligned_cols=439 Identities=33% Similarity=0.578 Sum_probs=376.5
Q ss_pred ccccCCcchhHHHHHhhcCCeecccCcccCCCCCchhhHHHHHHHHHHHHHhhhCCCCCCCCCCCCCcccccceEEEEec
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYD 84 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~~~e~~f~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (509)
+||+|| |++|+||++|||+|++|+|.+|+ ++|++|++|++++|++|.+..+.... . +.+.+....
T Consensus 157 ~fc~~~--k~~d~~L~~lGa~ri~~~~~~D~--~~e~~~~~W~~~~~~~l~~~~~~~~~-----~------~~~~~~~~~ 221 (597)
T TIGR01931 157 FFCQTG--KDFDKRLEELGGKRLLPRVDADL--DYDANAAEWRAGVLTALNEQAKGSAS-----T------PSLSETPAR 221 (597)
T ss_pred HHhHHH--HHHHHHHHHcCCeEeeccccCcc--ChHHHHHHHHHHHHHHHHhhccCccC-----C------Ccceecccc
Confidence 699999 99999999999999999997775 69999999999999999765431100 0 111110000
Q ss_pred CCCccccccccCCCCCCCcccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHH
Q 010480 85 NADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEAL 164 (509)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l 164 (509)
. ......++..+|+.|+|++|++||.++++++|+||+|+++++++.|+|||+|+|+|+|++++|+++|
T Consensus 222 -~-----------~~~~~~~~~~~p~~a~v~~n~~lt~~~~~k~~~hiel~l~~~~~~Y~~GD~l~V~P~N~~~~V~~~l 289 (597)
T TIGR01931 222 -S-----------QTATSVYSKQNPFRAEVLENQKITGRNSKKDVRHIEIDLEGSGLHYEPGDALGVWYKNDPALVKEIL 289 (597)
T ss_pred -c-----------ccccCCccCCCCeEEEEEeeEecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEeCCCHHHHHHHH
Confidence 0 0112235567899999999999999999999999999999889999999999999999999999999
Q ss_pred HHhCCCCCcEEEEecCCCCCCCCCCCCCCCCCCcccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccC
Q 010480 165 SLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAG 244 (509)
Q Consensus 165 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~ 244 (509)
++||+++++.+++. + .++|++++|++|+||+. +++.||+.||++++|+..++ +.+ +
T Consensus 290 ~~l~l~~~~~v~~~-----~------------~~~tl~~~l~~~~dl~~-~~~~~l~~la~~~~~~~l~~----~~~--~ 345 (597)
T TIGR01931 290 KLLNLDPDEKVTIG-----G------------KTIPLFEALITHFELTQ-NTKPLLKAYAELTGNKELKA----LIA--D 345 (597)
T ss_pred HHhCCCCCCeEEeC-----C------------CCcCHHHHHHhceeCCC-CCHHHHHHHHHhcCCHHHHH----Hhc--C
Confidence 99999999988763 1 15699999999999998 58999999999999986544 333 5
Q ss_pred HHHHHHHHHhcCCCHHHHHhhCCCCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCc
Q 010480 245 KDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCS 324 (509)
Q Consensus 245 ~~~~~~~~~~~~~~~~dvl~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S 324 (509)
++.|.+|+. +++++|||++|| +++++|||+++ +|++.||+|||||+|..++++++|+|++|.+. ..++.+.|.||
T Consensus 346 ~~~~~~y~~--~~~~~dvl~~fp-~~~~~gq~v~l-l~~~~~R~YSIaSsp~~~~~~l~ltV~~v~~~-~~~~~~~G~~S 420 (597)
T TIGR01931 346 NEKLKAYIQ--NTPLIDLIRDYP-ADLDAEQLISL-LRPLTPRLYSISSSQSEVGDEVHLTVGVVRYQ-AHGRARLGGAS 420 (597)
T ss_pred HHHHHHHHc--CCCHHHHHHHCC-CCCCHHHHHHh-CcccCCceeeeccCcccCCCEEEEEEEEEEec-CCCCccccchh
Confidence 677888885 689999999999 89999999976 48899999999999987778999999998765 45778899999
Q ss_pred hhhhh-cCCCccCCCCceeeEEEe-cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCC
Q 010480 325 TWMKN-SLPMEKSNDCSWAPIFVR-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNR 402 (509)
Q Consensus 325 ~~L~~-~~~~~~~~~~~~v~v~~~-~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~ 402 (509)
+||.+ +.+| + .++|+++ +|.|++|.++.+|+||||+||||||||||++++...+. .++++||||||+.
T Consensus 421 ~~L~~~l~~G-d-----~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~----~g~~~LffG~R~~ 490 (597)
T TIGR01931 421 GFLAERLKEG-D-----TVPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQERAEDGA----KGKNWLFFGNPHF 490 (597)
T ss_pred HHHHhhCCCC-C-----EEEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHccC----CCCEEEEECCCCC
Confidence 99998 5544 3 4788876 46899998888999999999999999999999876432 3789999999995
Q ss_pred CCccccHHHHHHHHHcCCcCeEEEEEecCCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHH
Q 010480 403 KMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQE 482 (509)
Q Consensus 403 ~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~~ 482 (509)
..|++|++||++|.+.+.+++++++|||++..++||||+|.++.+.+++++..+++|||||+++.|+++|.++|.+++.+
T Consensus 491 ~~D~ly~~El~~~~~~~~l~~l~~afSRd~~~k~yVqd~l~e~~~~~~~~l~~~a~vYvCG~~~~M~~~V~~~L~~i~~~ 570 (597)
T TIGR01931 491 TTDFLYQVEWQNYLKKGVLTKMDLAFSRDQAEKIYVQHRIREQGAELWQWLQEGAHIYVCGDAKKMAKDVHQALLDIIAK 570 (597)
T ss_pred CcchhHHHHHHHHHHcCCCceeEEEEecCCCCCccHHHHHHHhHHHHHHHHhCCcEEEEECCCccccHHHHHHHHHHHHH
Confidence 55999999999999999888899999998778999999999988889888877899999994389999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 483 QGSLDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 483 ~~~~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
++++++++|++|+++|+++|||++|||
T Consensus 571 ~g~~s~~~A~~~l~~l~~~~RY~~DVy 597 (597)
T TIGR01931 571 EGHLDAEEAEEYLTDLRVEKRYQRDVY 597 (597)
T ss_pred hCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 999999999999999999999999999
No 5
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-83 Score=679.59 Aligned_cols=441 Identities=37% Similarity=0.644 Sum_probs=392.9
Q ss_pred ccccCCcchhHHHHHhhcCCeecccCcccCCCCCchhhHHHHHHHHHHHHHhhhCCCCCCCCCCCCCcccccceEEEEec
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYD 84 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~~~e~~f~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (509)
.||.+| |.+|++|.++||.|++++++||.+ +++.+..+|...+++.+...++..... ...+ ...
T Consensus 146 ~~~~~~--k~~~~~l~~~Ga~~l~~~~~~D~~-~~e~~~~~w~~~~~~~l~~~~~~~~~~--~~~~-----------~~~ 209 (587)
T COG0369 146 FFCQAG--KDFDRRLQELGATRLFPRVEADVQ-DFEAAAAPWRDDVLELLKSKFPGQEAA--PAQV-----------ATS 209 (587)
T ss_pred hhhccc--hhhHHHHHhcCcccccCccccccc-ccchhhhHHHHHHHHHHHhhccccccc--cccc-----------cch
Confidence 599999 999999999999999999999998 999999999999999998766422110 0000 000
Q ss_pred CCCccccccccCCCCCCCcccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHH
Q 010480 85 NADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEAL 164 (509)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l 164 (509)
. .. ...+....++.+.+..|++|+..+++++++|++|++++++++|+|||+|+|||+|+++.|+.+|
T Consensus 210 ~------------~~-~~~~~~~~~~~a~~~~n~~l~~~~~~k~~rhie~~l~~s~~~y~~GD~lgV~p~N~~~lV~~~l 276 (587)
T COG0369 210 P------------QS-ESPYSKPAPSVAILLENRKLTGRDSDKDVRHIELDLPDSGLRYEPGDALGVWPENDPELVDEFL 276 (587)
T ss_pred h------------cc-cccccccCcceeEeeccccCCccccCceeEEEEeecccccceeCCCCeeEEcCCCCHHHHHHHH
Confidence 0 00 1123345678999999999999999999999999999889999999999999999999999999
Q ss_pred HHhCCCCCcEEEEecCCCCCCCCCCCCCCCCCCcccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccC
Q 010480 165 SLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAG 244 (509)
Q Consensus 165 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~ 244 (509)
+.+||+++..+.+. + .++++.++|++|+|++..| |.|+..|+.|+.++..++.|+.++
T Consensus 277 ~~~gl~~~~~v~~~-----~------------~~~~~~~~l~~~~e~~~~~-~~~~~~l~~~~~~~~~~~~l~~l~---- 334 (587)
T COG0369 277 ELLGLDPEEPVTVD-----G------------ETLPLVEALKSHFEFTSAP-KSLLENLAHFAGQEELRRLLEQLD---- 334 (587)
T ss_pred HHcCCCCCceeccC-----C------------CcchHHHHHHHheecccch-HHHHHHHHHhcCCHHHHHHHHhhh----
Confidence 99999998766331 1 1678999999999999999 999999999999999999999987
Q ss_pred HHHHHHHHHhcCCCHHHHHhhCCCCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCc
Q 010480 245 KDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCS 324 (509)
Q Consensus 245 ~~~~~~~~~~~~~~~~dvl~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S 324 (509)
..+|+.|.. +++++|+|++||++++|+++|++. +|+++||.|||||+|..+++++||||.+|.+... ++.+.|+||
T Consensus 335 ~~~~~~~~~--~~~~~d~L~~f~~~~l~~~~li~~-l~~lkPR~YSIsSs~~~~~~~vhltV~vV~y~~~-~~~r~GvcS 410 (587)
T COG0369 335 IADLQDYAK--RRTLIDVLRDFPPAKLPAEELIDL-LPPLKPRLYSIASSPGVSPDEVHLTVGVVRYQAE-GRERYGVCS 410 (587)
T ss_pred hHHHHhhhc--cccHHHHHhhccccCCCHHHHHHh-CccCCCeeeEeccCCCCCCCeEEEEEEEEEeccC-CCcccccch
Confidence 456777775 799999999999999999999986 5999999999999999999999999999988877 458899999
Q ss_pred hhhhhcCCCccCCCCceeeEEEecC-CCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCC
Q 010480 325 TWMKNSLPMEKSNDCSWAPIFVRQS-NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRK 403 (509)
Q Consensus 325 ~~L~~~~~~~~~~~~~~v~v~~~~g-~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~ 403 (509)
+||+++...|+ .++|+++.+ +|++|.++.+||||||+||||||||+|+|++...+.. +++|||||||+.+
T Consensus 411 ~~L~~~~~~g~-----~i~v~v~~n~nf~lp~~~~~PiIMIG~GTGIAPFRafvq~r~~~~~~----gk~wLfFG~R~~~ 481 (587)
T COG0369 411 GYLADLLEEGD-----TIPVFVQPNKNFRLPEDPETPIIMIGPGTGIAPFRAFVQERAANGAE----GKNWLFFGCRHFT 481 (587)
T ss_pred HHHHhhhcCCC-----eEEEEeccCCccccCCCCCCceEEEcCCCCchhHHHHHHHHHhcccc----CceEEEecCCCCc
Confidence 99999988544 488999876 8999999889999999999999999999999886533 6899999999988
Q ss_pred CccccHHHHHHHHHcCCcCeEEEEEecCCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHc
Q 010480 404 MDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQ 483 (509)
Q Consensus 404 ~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~ 483 (509)
.||+|++||++|.+.|.++++..||||++.+|.||||+|+++++.|++++.++++|||||++..|.++|.++|.+|+.+.
T Consensus 482 ~DfLY~~Ewe~~~~~G~~~~l~~AfSRdq~~KiYVQd~lre~~del~~~l~~ga~~YVCGd~~~Ma~dV~~AL~~il~~~ 561 (587)
T COG0369 482 EDFLYQEEWEEYLKDGVLTRLDLAFSRDQEEKIYVQDRLREQADELWEWLEEGAHIYVCGDAKGMAKDVEEALLDILAKE 561 (587)
T ss_pred cchhhHHHHHHHHhcCCceeEEEEEeecCCCCccHHHHHHHhHHHHHHHHHCCCEEEEeCCCccchHHHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999999999888999999966999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 484 GSLDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 484 ~~~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
++++.|+|.+|+++|++++||++|||
T Consensus 562 g~~s~eea~~~l~~lk~~~RY~~DVy 587 (587)
T COG0369 562 GGLSREEAEEYLKELKKEGRYQRDVY 587 (587)
T ss_pred CCCcHHHHHHHHHHHHhcCceeeecC
Confidence 99999999999999999999999999
No 6
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=100.00 E-value=1.1e-81 Score=656.09 Aligned_cols=393 Identities=52% Similarity=0.932 Sum_probs=352.9
Q ss_pred CCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCC-CCcEEEEecCCCCCC
Q 010480 107 QHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLS-PDTYFSLHTDKEDGT 185 (509)
Q Consensus 107 ~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~-~~~~~~~~~~~~~~~ 185 (509)
.+|+.|+|++|++||++ ++|+++||+||+++++++|+|||+|+|+|+|+++.|+++|++||++ +++.+.+.....
T Consensus 3 ~~~~~~~v~~~~~lt~~-~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~i~~~~~~~--- 78 (416)
T cd06204 3 KNPFLAPVAVSRELFTG-SDRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLLKVLGLDDRDTVISLKSLDE--- 78 (416)
T ss_pred CCCeEeEEEEEeeccCC-CCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCceEEeecCCc---
Confidence 46889999999999998 9999999999998778999999999999999999999999999999 899888864321
Q ss_pred CCCCCCCCCCCC-cccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHh
Q 010480 186 PLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMS 264 (509)
Q Consensus 186 ~~~~~~~~~~~~-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~ 264 (509)
..+.+.|+| |+|++++|++|+||+++|++.+|+.||.||+|+++|++|.+|++ +|.++|.+|+.+.++|++|||.
T Consensus 79 ---~~~~~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~s-~~~~~~~~~~~~~~~~~~dvL~ 154 (416)
T cd06204 79 ---PASKKVPFPCPTTYRTALRHYLDITAPVSRQVLAALAQFAPDPEEKERLLKLAS-EGKDEYAKWIVEPHRNLLEVLQ 154 (416)
T ss_pred ---ccccCCCCCCCccHHHHHHhhEEeCCCCcHHHHHHHHHHcCCHHHHHHHHHHHh-cCHHHHHHHHhhcCCCHHHHHH
Confidence 122345788 99999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred hCCCCC---CChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCcc------
Q 010480 265 EFPSAK---PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEK------ 335 (509)
Q Consensus 265 ~fps~~---~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~------ 335 (509)
+||+++ +|++.|++.+ |+++||+|||||+|..++++++|||+++.+.++.++.+.|+||+||+++.++..
T Consensus 155 ~f~s~~~~~~pl~~ll~~l-p~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~ 233 (416)
T cd06204 155 DFPSAKPTPPPFDFLIELL-PRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPT 233 (416)
T ss_pred hCcccCCCCCCHHHHHHhC-ccCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhccccccc
Confidence 999999 9999999874 999999999999998778999999999988888888899999999999875110
Q ss_pred ---------CCCCceeeEEEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCcc
Q 010480 336 ---------SNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDY 406 (509)
Q Consensus 336 ---------~~~~~~v~v~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ 406 (509)
...+..++++++.|.|.+|.+..+|+||||+|||||||+||++++......+...++++||||||+++.|+
T Consensus 234 ~~~~~~~~~~~~g~~v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ 313 (416)
T cd06204 234 PYYLSGPRKKGGGSKVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDF 313 (416)
T ss_pred ccccccccccCCCCeEEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCccc
Confidence 00133588999999999998778999999999999999999999875432233347899999999984499
Q ss_pred ccHHHHHHHHHcCCcCeEEEEEecCCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcc-hHHHHHHHHHHHHHHcCC
Q 010480 407 IYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKS-MARDVHRTLHTIVQEQGS 485 (509)
Q Consensus 407 ly~~el~~~~~~~~~~~~~~a~Sr~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~-M~~~v~~~L~~i~~~~~~ 485 (509)
+|++||++|++.+.+++++++|||++..++|||++|.+..+.+++++.++++||+||| +. |+++|.++|.++++++++
T Consensus 314 ly~~el~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~i~~~~~~~~~~l~~~~~vYvCGp-~~~M~~~V~~~L~~i~~~~~~ 392 (416)
T cd06204 314 IYKDELEEYAKLGGLLELVTAFSREQPKKVYVQHRLAEHAEQVWELINEGAYIYVCGD-AKNMARDVEKTLLEILAEQGG 392 (416)
T ss_pred chHHHHHHHHHcCCceEEEEEECcCCCCCcchHHHHHHhHHHHHHHHHcCCEEEEECC-cccchHHHHHHHHHHHHHhCC
Confidence 9999999999988878899999998777899999999888888887766799999999 55 999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 486 LDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 486 ~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
+++++|++|+++|+++|||++|||
T Consensus 393 ~~~~~A~~~l~~l~~~gRy~~dvw 416 (416)
T cd06204 393 MTETEAEEYVKKLKTRGRYQEDVW 416 (416)
T ss_pred CCHHHHHHHHHHHHHcCCeeEecC
Confidence 999999999999999999999999
No 7
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=100.00 E-value=5.4e-80 Score=640.32 Aligned_cols=381 Identities=39% Similarity=0.710 Sum_probs=339.8
Q ss_pred EeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCC--CCcEEEEecCCCCCCCCCCCC
Q 010480 114 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLS--PDTYFSLHTDKEDGTPLGKST 191 (509)
Q Consensus 114 v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~--~~~~~~~~~~~~~~~~~~~~~ 191 (509)
|.+|++||+++++++++||+|+++++++.|+|||+|+|+|+|++++|++++++||++ ++..++++....... .+..
T Consensus 2 v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~--~~~~ 79 (398)
T cd06203 2 ISSAKKLTEGDDVKTVVDLTLDLSPTGFDYQPGDTIGILPPNTASEVESLLKRLGLLEQADQPCEVKVVPNTKK--KNAK 79 (398)
T ss_pred cccceEECCCCCCceEEEEEEecCCCCCcCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccc--cccc
Confidence 678999999999999999999998788999999999999999999999999999999 788888864221111 1134
Q ss_pred CCCCCC-cccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCC
Q 010480 192 LPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAK 270 (509)
Q Consensus 192 ~~~~~~-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~ 270 (509)
++.++| |+|++++|++||||+++|+++||+.||+||+|++||++|.+|++.+|+++|.+|+.+.++|++|||++||+++
T Consensus 80 ~~~~~p~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvL~~f~s~~ 159 (398)
T cd06203 80 VPVHIPKVVTLRTILTWCLDIRAIPKKPLLRALAEFTSDDNEKRRLEELCSKQGSEDYTDFVRKRGLSLLDLLEAFPSCR 159 (398)
T ss_pred cCCCCCCCccHHHHHHHhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHcChhhHHHHHHHHhhcCCCHHHHHHhCCCCC
Confidence 667888 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcC-----CCccCCCCceeeEE
Q 010480 271 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSL-----PMEKSNDCSWAPIF 345 (509)
Q Consensus 271 ~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~-----~~~~~~~~~~v~v~ 345 (509)
+|++.+++.+ |+++||+|||||+|..+++.++|+|+++.+.+ .|+||+||+++. +|+ .+.+.
T Consensus 160 ~pl~~ll~~l-p~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~------~G~~S~~L~~l~~~~~~~G~------~v~i~ 226 (398)
T cd06203 160 PPLSLLIEHL-PRLQPRPYSIASSPLEGPGKLRFIFSVVEFPA------KGLCTSWLESLCLSASSHGV------KVPFY 226 (398)
T ss_pred CCHHHHHHhC-ccCCCcceeecCCcccCCCeEEEEEEEEEecC------CChhhHHHHHhhhhhcCCCC------EEEEE
Confidence 9999999875 99999999999999866789999999885432 599999999987 543 37788
Q ss_pred Ee-cCCCCCCCC-CCCCEEEEccCCccchhHHHHHHHHHHHh--hcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCc
Q 010480 346 VR-QSNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQE--AGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL 421 (509)
Q Consensus 346 ~~-~g~F~lp~~-~~~pii~Ia~GtGIAP~~s~l~~~~~~~~--~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~ 421 (509)
++ .|.|.+|.+ ..+|+||||+|||||||+||++++..... .+...++++||||||+++.|++|++||++|++.+.+
T Consensus 227 ~~~~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~ 306 (398)
T cd06203 227 LRSSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGIL 306 (398)
T ss_pred EecCCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCCC
Confidence 74 578999876 67899999999999999999999876321 122347999999999994599999999999999998
Q ss_pred CeEEEEEecCCC---CcccchhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 010480 422 SQLIVAFSREGP---TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKN 497 (509)
Q Consensus 422 ~~~~~a~Sr~~~---~~~yvq~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~ 497 (509)
++++++|||++. .++|||+.|.++.+.+++++ ..++.||||||++.|+++|+++|.+|+.+++++++++|++|+++
T Consensus 307 ~~~~~a~SRd~~~~g~k~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~~~l~~i~~~~~~~~~~~a~~~~~~ 386 (398)
T cd06203 307 TRLIVAFSRDENDGSTPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFVDILSKELGLDKLEAKKLLAR 386 (398)
T ss_pred ceEEEEECCCCCCCCCceecchHHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 889999999876 58999999999988888876 46899999999678999999999999999999999999999999
Q ss_pred HHHCCCeEEeeC
Q 010480 498 LQMTGRYLRDVW 509 (509)
Q Consensus 498 l~~~~Ry~~dvw 509 (509)
|+++|||++|||
T Consensus 387 l~~~gRy~~dvw 398 (398)
T cd06203 387 LRKEDRYLEDVW 398 (398)
T ss_pred HHHcCCeeeecC
Confidence 999999999999
No 8
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=100.00 E-value=1.2e-79 Score=635.90 Aligned_cols=378 Identities=43% Similarity=0.785 Sum_probs=343.1
Q ss_pred EeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCCcEEEEecCCCCCCCCCCCCCC
Q 010480 114 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLP 193 (509)
Q Consensus 114 v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 193 (509)
|++|++||.++++++++||+|++++++++|+|||+|+|+|+|+++.|+++|++||+++++.+++.... ..+.+
T Consensus 2 v~~~~~lt~~~~~~~~~hl~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~-------~~~~~ 74 (382)
T cd06207 2 VTENKRLTPADYDRSTRHIEFDLGGSGLSYETGDNLGIYPENSDALVDEFLARLGLDGDDVVRVEPNE-------QQRGK 74 (382)
T ss_pred cceeeecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEEeccc-------ccccC
Confidence 57899999999999999999999878899999999999999999999999999999999998886422 11234
Q ss_pred CCCC-cccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCC
Q 010480 194 PTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPP 272 (509)
Q Consensus 194 ~~~~-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~~~ 272 (509)
.++| |+|++++|++||||+++|++.+|+.||.||+|+++|++|.+|++.++.+.|.+| .+++++|+|++||++++|
T Consensus 75 ~~~~~~~t~~~ll~~~~dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~~~~~~~~~~~~---~~~~~~d~L~~f~~~~~~ 151 (382)
T cd06207 75 PPFPEPISVRQLLKKFLDIFGKPTKKFLKLLSQLATDEEEKEDLYKLASREGRTEYKRY---EKYTYLEVLKDFPSVRPT 151 (382)
T ss_pred CCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhChhhHHHHHhc---cCCCHHHHHHhCCcCCCC
Confidence 5788 999999999999999999999999999999999999999999999999999888 789999999999999999
Q ss_pred hhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecCCCC
Q 010480 273 LGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFK 352 (509)
Q Consensus 273 ~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g~F~ 352 (509)
++.|++. +|+++||+|||||+|..+++.++|+|+++.+.++.++.+.|+||+||+++.+|+ .+.|.++.|.|.
T Consensus 152 ~~~ll~~-lp~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~~p~g~F~ 224 (382)
T cd06207 152 LEQLLEL-CPLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQ------RVTVFIKKSSFK 224 (382)
T ss_pred HHHHHHh-CcCCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCCC------EEEEEEECCccc
Confidence 9999987 499999999999999866789999999998888778888999999999876654 478999999999
Q ss_pred CCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEecCC
Q 010480 353 LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG 432 (509)
Q Consensus 353 lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~ 432 (509)
+|.+..+|+||||+|||||||+||++++......+...++++||||||+++.|++|++||++|++.+.+++++++|||++
T Consensus 225 lp~~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Srd~ 304 (382)
T cd06207 225 LPKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSGVLTTLGTAFSRDQ 304 (382)
T ss_pred CCCCCCCCEEEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhCCCCceEEEEecCCC
Confidence 99877899999999999999999999987653333345899999999999449999999999999998889999999998
Q ss_pred CCcccchhhHhhcHHHHHHHHhCC-CEEEEecCCcc-hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 433 PTKEYVQHKMMEKSSDIWNMLSEG-AYLYVCGDAKS-MARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 433 ~~~~yvq~~i~~~~~~v~~~l~~~-~~iyvCGp~~~-M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
..++|||+++.+..+.+++++.++ +.|||||| +. |+++|.++|.+++.+++++++++|++|+++|+++|||++|||
T Consensus 305 ~~~~yVq~~l~~~~~~~~~~l~~~~~~vYvCG~-~~~M~~~V~~~L~~~~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 382 (382)
T cd06207 305 PKKVYVQDLIRENSDLVYQLLEEGAGVIYVCGS-TWKMPPDVQEAFEEILKKHGGGDEELAEKKIEELEERGRYVVEAW 382 (382)
T ss_pred CCceEhHHHHHHCHHHHHHHHhcCCCEEEEECC-cccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 889999999999888888877544 49999999 66 999999999999999999999999999999999999999999
No 9
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=100.00 E-value=8.1e-79 Score=632.58 Aligned_cols=386 Identities=41% Similarity=0.736 Sum_probs=336.9
Q ss_pred EeeeeccCCCCCCCcEEEEEEEeCC-CCCccCCCCeeEEcccCCHHHHHHHHHHhCCC--CCcEEEEecCCCCCCCCC--
Q 010480 114 VAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCENLSETVEEALSLLGLS--PDTYFSLHTDKEDGTPLG-- 188 (509)
Q Consensus 114 v~~~~~L~~~~~~~~~~~i~l~~~~-~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~--~~~~~~~~~~~~~~~~~~-- 188 (509)
|+.|++|+++++.|+|+||+||+++ +++.|+|||+|+|+|+|+++.|+++|++||+. .+..+.++.........+
T Consensus 2 ~~~~~~l~~~~~~~~~~~i~ld~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T cd06202 2 VISRQNLQSPKSSRSTILVKLDTNGAQELHYQPGDHVGIFPANRPELVDALLDRLHDAPPPDQVIKLEVLEERSTALGII 81 (406)
T ss_pred cceeeecCCCCCCceEEEEEEECCCCCCCCCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCCceEEEEecCCCCcccccc
Confidence 6789999999999999999999986 68999999999999999999999999999984 467777764322111100
Q ss_pred CCCCCCCCC-cccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCC
Q 010480 189 KSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFP 267 (509)
Q Consensus 189 ~~~~~~~~~-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fp 267 (509)
....+.+++ |+|++++|++|+||+++|++.+|+.||.||+|+.+|++|++|++ +.+.|.+|+.+.++|++|||++||
T Consensus 82 ~~~~~~~~~~~~tl~~ll~~~lDl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~~~~dvL~~f~ 159 (406)
T cd06202 82 KTWTPHERLPPCTLRQALTRYLDITTPPTPQLLQLLATLATDEKDKERLEVLGK--GSSEYEDWKWYKNPNILEVLEEFP 159 (406)
T ss_pred ccccccCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhc--CHHHHHHHHhccCCCHHHHHHhCC
Confidence 011223444 89999999999999999999999999999999999999999997 788999999999999999999999
Q ss_pred CCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCC--CccccCcCchhhhhcCCCccCCCCceeeEE
Q 010480 268 SAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPT--GRVHKGLCSTWMKNSLPMEKSNDCSWAPIF 345 (509)
Q Consensus 268 s~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~--~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~ 345 (509)
++++|++.|++. +|+++||+|||||+|..+++.++|+|+++.+.++. ++.+.|+||+||+++.+|+ .+.|+
T Consensus 160 s~~~~~~~ll~~-lp~l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~ 232 (406)
T cd06202 160 SLQVPASLLLTQ-LPLLQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGD------TVPCF 232 (406)
T ss_pred cCCCCHHHHHHh-CcccCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCCC------EEEEE
Confidence 999999999987 59999999999999987789999999998776543 4467899999999887754 36777
Q ss_pred Eec-CCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHh----hcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCC
Q 010480 346 VRQ-SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQE----AGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA 420 (509)
Q Consensus 346 ~~~-g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~----~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~ 420 (509)
++. +.|.+|.+..+|+||||+|||||||||||+++..... .+...++++||||||+++.|++|++||++|.+.+.
T Consensus 233 ~~~~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~~ 312 (406)
T cd06202 233 VRSAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKGV 312 (406)
T ss_pred EeeCCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcCC
Confidence 764 5899998878999999999999999999999864321 12235899999999999559999999999999999
Q ss_pred cCeEEEEEecCCC-CcccchhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 010480 421 LSQLIVAFSREGP-TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNL 498 (509)
Q Consensus 421 ~~~~~~a~Sr~~~-~~~yvq~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l 498 (509)
+++++++|||++. .++|||+.|.++.+.+++++ ..+++|||||| +.|+++|.++|.+|++++++++.++|++|+++|
T Consensus 313 ~~~~~~a~SR~~~~~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~-~~M~~~V~~~L~~i~~~~~~~s~~~A~~~~~~l 391 (406)
T cd06202 313 LTEVYTALSREPGKPKTYVQDLLKEQAESVYDALVREGGHIYVCGD-VTMAEDVSQTIQRILAEHGNMSAEEAEEFILKL 391 (406)
T ss_pred CceEEEEEcCCCCCCCeehhhHHHHhHHHHHHHHHhCCCEEEEeCC-CchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 8889999999864 58999999999988999877 67899999999 689999999999999999999999999999999
Q ss_pred HHCCCeEEeeC
Q 010480 499 QMTGRYLRDVW 509 (509)
Q Consensus 499 ~~~~Ry~~dvw 509 (509)
+++|||++|||
T Consensus 392 ~~~gRy~~dvw 402 (406)
T cd06202 392 RDENRYHEDIF 402 (406)
T ss_pred HHcCCeEEEec
Confidence 99999999999
No 10
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=100.00 E-value=1.3e-76 Score=613.57 Aligned_cols=375 Identities=36% Similarity=0.617 Sum_probs=331.0
Q ss_pred EEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCCcEEEEecCCCCCCCCCCCCC
Q 010480 113 NVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTL 192 (509)
Q Consensus 113 ~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 192 (509)
+|+.|++||+++++|+++||+|++++ +++|+|||+|+|+|+|+++.|+++|++||+++++.++++.... ..
T Consensus 1 ~v~~~~~lt~~~~~~~~~~~~~~~~~-~~~y~~GD~l~v~P~N~~~~V~~~l~~l~l~~~~~i~i~~~~~--------~~ 71 (384)
T cd06206 1 TVVENRELTAPGVGPSKRHLELRLPD-GMTYRAGDYLAVLPRNPPELVRRALRRFGLAWDTVLTISASGS--------AT 71 (384)
T ss_pred CeeeEEEcCCCCCCccEEEEEEECCC-CCccCCCCEEEEECCCCHHHHHHHHHHhCCCccCEEEEecCCC--------CC
Confidence 47899999999999999999999974 8999999999999999999999999999999999998874221 22
Q ss_pred CCCCC-cccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCC
Q 010480 193 PPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKP 271 (509)
Q Consensus 193 ~~~~~-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~~ 271 (509)
+.|++ |+|++++|++|+||+++|+++||+.||+||+|+++|++|..++ +++|.+++..+++|++|||++||++++
T Consensus 72 ~~p~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~l~~~~----~~~~~~~~~~~~~~~~d~l~~f~s~~~ 147 (384)
T cd06206 72 GLPLGTPISVSELLSSYVELSQPATRRQLAALAEATRCPDTKALLERLA----GEAYAAEVLAKRVSVLDLLERFPSIAL 147 (384)
T ss_pred CCCCCCCEEHHHHHHhhccccCCCCHHHHHHHHHHCCCHHHHHHHHHhh----hhHHHHHHHhcCCCHHHHHHhCCCCCC
Confidence 34567 8999999999999999999999999999999999999999885 357889999999999999999999999
Q ss_pred ChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCC-ccccCcCchhhhhcCCCccCCCCceeeEE--Eec
Q 010480 272 PLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTG-RVHKGLCSTWMKNSLPMEKSNDCSWAPIF--VRQ 348 (509)
Q Consensus 272 ~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~-~~~~G~~S~~L~~~~~~~~~~~~~~v~v~--~~~ 348 (509)
|++||++++ |+++||+|||||+|..+++.++|+|+++.+.++.+ +.+.|.||+||+++.+|+. +.+. .+.
T Consensus 148 ~~~~~l~~~-p~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~Gd~------v~v~i~~p~ 220 (384)
T cd06206 148 PLATFLAML-PPMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGDS------IHVSVRPSH 220 (384)
T ss_pred CHHHHHHhC-cccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCCCe------EEEEEecCC
Confidence 999999875 99999999999999766789999999987665544 5678999999998766543 5654 346
Q ss_pred CCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEE
Q 010480 349 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 428 (509)
Q Consensus 349 g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~ 428 (509)
|.|.+|.+..+|+||||+|||||||+||++++......+...++++||||||+.+.|++|++||++|++.+.+ ++++++
T Consensus 221 g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~~-~l~~a~ 299 (384)
T cd06206 221 SAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEAAGVV-SVRRAY 299 (384)
T ss_pred CccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHHCCCe-EEEEEe
Confidence 8899987778999999999999999999999876433233347899999999994499999999999986654 899999
Q ss_pred ecCCCC-cccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHCCC
Q 010480 429 SREGPT-KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQG----SLDSSKAESMVKNLQMTGR 503 (509)
Q Consensus 429 Sr~~~~-~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~----~~~~~~a~~~~~~l~~~~R 503 (509)
||++.. ++|||++|.+..+.+++++.+++.|||||| ++|+++|.++|.+++.+++ +++.++|++|+++|+++||
T Consensus 300 Sr~~~~~~~yVq~~i~~~~~~~~~~~~~~~~vyiCGp-~~M~~~v~~~L~~i~~~~~~~~~~~~~~~A~~~~~~l~~~gr 378 (384)
T cd06206 300 SRPPGGGCRYVQDRLWAEREEVWELWEQGARVYVCGD-GRMAPGVREVLKRIYAEKDERGGGSDDEEAEEWLEELRNKGR 378 (384)
T ss_pred cccCCCCCEechhhHHhhHHHHHHHHHCCcEEEEECC-CchHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHcCC
Confidence 998654 899999998888888887767899999999 6799999999999999999 9999999999999999999
Q ss_pred eEEeeC
Q 010480 504 YLRDVW 509 (509)
Q Consensus 504 y~~dvw 509 (509)
|++|||
T Consensus 379 y~~dvw 384 (384)
T cd06206 379 YATDVF 384 (384)
T ss_pred eeeecC
Confidence 999999
No 11
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=100.00 E-value=7.4e-74 Score=587.27 Aligned_cols=356 Identities=40% Similarity=0.670 Sum_probs=315.0
Q ss_pred EEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCCcEEEEecCCCCCCCCCCCCC
Q 010480 113 NVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTL 192 (509)
Q Consensus 113 ~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 192 (509)
+|++|++||+++++++++||+|++++++++|+|||+|+|+|+|+++.|+++|++||+++++.+.+
T Consensus 1 ~v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~--------------- 65 (360)
T cd06199 1 TVLENRLLTGPGSEKETRHIELDLEGSGLSYEPGDALGVYPTNDPALVDELLAALGLSGDEPVST--------------- 65 (360)
T ss_pred CcceeEeCCCCCCCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCeEeC---------------
Confidence 36789999999999999999999988889999999999999999999999999999999887642
Q ss_pred CCCCC-cccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCC--CC
Q 010480 193 PPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFP--SA 269 (509)
Q Consensus 193 ~~~~~-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fp--s~ 269 (509)
++| ++|++++|++|+||+++ .++.|+.||+++.++++|+. +|++.|.+ +++++|||++|| ++
T Consensus 66 --~~~~~~t~~~~l~~~~dl~~~----~~~~l~~~a~~~~~~~~l~~----~~~~~~~~-----~~~~~d~L~~f~~~~~ 130 (360)
T cd06199 66 --VGGGTLPLREALIKHYEITTL----LLALLESYAADTGALELLAL----AALEAVLA-----FAELRDVLDLLPIPPA 130 (360)
T ss_pred --CCCCcccHHHHHHhhhhhccC----hHHHHHHhcCCcchHHHHhh----cCHHHHHc-----cCcHHHHHHhccccCC
Confidence 124 78999999999999987 45558899999988888876 57777754 479999999999 99
Q ss_pred CCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEec-
Q 010480 270 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ- 348 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~- 348 (509)
++|++||++++ |+++||+|||||+|..+++.++|+|+++.+.++ ++.+.|.||+||+++.+.|+ .+.++++.
T Consensus 131 ~~~~gq~l~l~-~~~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~-~~~~~G~~S~~L~~~~~~Gd-----~v~v~~~~~ 203 (360)
T cd06199 131 RLTAEELLDLL-RPLQPRLYSIASSPKAVPDEVHLTVAVVRYESH-GRERKGVASTFLADRLKEGD-----TVPVFVQPN 203 (360)
T ss_pred CCCHHHHHHhC-cCCCCcceeeccCcccCCCeEEEEEEEeeecCC-CCccceehhHHHHhcCCCCC-----EEEEEEecC
Confidence 99999999864 999999999999998767899999998876653 46678999999999764443 47888754
Q ss_pred CCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEE
Q 010480 349 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 428 (509)
Q Consensus 349 g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~ 428 (509)
|.|++|.+..+|+||||+|||||||+||++++..... .++++||||||+++.|++|++||++|++.+.+++++++|
T Consensus 204 ~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~----~~~~~L~~G~R~~~~D~~y~~el~~~~~~~~~~~~~~a~ 279 (360)
T cd06199 204 PHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATGA----KGKNWLFFGERHFATDFLYQDELQQWLKDGVLTRLDTAF 279 (360)
T ss_pred CCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhccC----CCcEEEEEcCCCCccchhHHHHHHHHHHcCCCeEEEEEE
Confidence 5899998778999999999999999999999876432 378999999999855999999999999988888899999
Q ss_pred ecCCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEEee
Q 010480 429 SREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDV 508 (509)
Q Consensus 429 Sr~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dv 508 (509)
||++..++|||++|.++.+.+++++..+++||||||...|+++|+++|.+|++++++++.++|++|+++|+++|||++||
T Consensus 280 Sr~~~~~~yVq~~l~~~~~~~~~~~~~~~~vYvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dv 359 (360)
T cd06199 280 SRDQAEKVYVQDRMREQGAELWAWLEEGAHFYVCGDAKRMAKDVDAALLDIIATEGGMDEEEAEAYLKELKKEKRYQRDV 359 (360)
T ss_pred ccCCCCCccHHHHHHHhHHHHHHHHhCCCEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeec
Confidence 99987889999999998888888776789999999943899999999999999999999999999999999999999999
Q ss_pred C
Q 010480 509 W 509 (509)
Q Consensus 509 w 509 (509)
|
T Consensus 360 w 360 (360)
T cd06199 360 Y 360 (360)
T ss_pred C
Confidence 9
No 12
>PRK06214 sulfite reductase; Provisional
Probab=100.00 E-value=4.5e-73 Score=598.42 Aligned_cols=369 Identities=37% Similarity=0.651 Sum_probs=321.7
Q ss_pred CcccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCCcEEEEecCC
Q 010480 102 AVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDK 181 (509)
Q Consensus 102 ~~~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~ 181 (509)
..++.++|+.++|+.|++||+++++++++||+||+++++++|+|||+|+|+|.|++++|+++|++||++++..+
T Consensus 161 ~~~~~~~p~~a~v~~n~~Lt~~~~~~~~~hle~dl~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~------ 234 (530)
T PRK06214 161 LGTSRDNPVEATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYEVGDSLGLFPANDPALVDAVIAALGAPPEFPI------ 234 (530)
T ss_pred CccCcCCCEEEEEEeEEEcCCCCCCceEEEEEEecCCCCCccCCCCEEEEeccCCHHHHHHHHHHhCCCccCcc------
Confidence 34567889999999999999999999999999999988999999999999999999999999999999876432
Q ss_pred CCCCCCCCCCCCCCCCcccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHH
Q 010480 182 EDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLE 261 (509)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~d 261 (509)
.++|++++|++|+||+++| +.+|+.|+.+++++. |++|+.|++.+..+... ...+++|
T Consensus 235 ---------------~~~tlr~~L~~~~Dl~~~p-~~~~~~la~~~~~~~-~~~l~~L~~~~~~~~~~-----~~~~vld 292 (530)
T PRK06214 235 ---------------GGKTLREALLEDVSLGPAP-DGLFELLSYITGGAA-RKKARALAAGEDPDGDA-----ATLDVLA 292 (530)
T ss_pred ---------------CCccHHHHHHHheeccCCC-HHHHHHHHHhCCcHH-HHHHHHhhcccChhhhh-----hhCcHHH
Confidence 1569999999999999976 789999999998766 88888887543332211 2468999
Q ss_pred HHhhCCCCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCce
Q 010480 262 VMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSW 341 (509)
Q Consensus 262 vl~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~ 341 (509)
+|++||++++|+++|++. +|+++||+|||||+|..++++++|+|+++.+.. .++.+.|+||+||++..+.|+ .
T Consensus 293 vL~~fp~~~~~~~~lle~-lp~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~-~~~~~~G~~S~~L~~~l~~Gd-----~ 365 (530)
T PRK06214 293 ALEKFPGIRPDPEAFVEA-LDPLQPRLYSISSSPKATPGRVSLTVDAVRYEI-GSRLRLGVASTFLGERLAPGT-----R 365 (530)
T ss_pred HHHhCCCCCCCHHHHHhh-cCCCCcEEEEeccCCcCCCCEEEEEEEEEeecc-CCccccchhhHHHHhcCCCCC-----E
Confidence 999999999999999986 499999999999999866789999999987663 467788999999986444443 3
Q ss_pred eeEEEec-CCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCC
Q 010480 342 APIFVRQ-SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA 420 (509)
Q Consensus 342 v~v~~~~-g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~ 420 (509)
+.|+++. +.|++|.+..+|+||||+||||||||||++++..... .++++||||||+.+.|++|++||++|.+.+.
T Consensus 366 V~v~i~~~~gF~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~~----~g~~~LffG~R~~~~D~ly~dEL~~l~~~g~ 441 (530)
T PRK06214 366 VRVYVQKAHGFALPADPNTPIIMVGPGTGIAPFRAFLHERAATKA----PGRNWLFFGHQRSATDFFYEDELNGLKAAGV 441 (530)
T ss_pred EEEEecCCCCCccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhcC----CCCeEEEEEecCChhhhHHHHHHHHHHHhCC
Confidence 6777753 3499997777899999999999999999999876432 3789999999876669999999999999998
Q ss_pred cCeEEEEEecCCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 010480 421 LSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQM 500 (509)
Q Consensus 421 ~~~~~~a~Sr~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~ 500 (509)
+++++++|||++..++|||++|.++...+++++.++++||||||++.|.++|+++|.+|+.+++++++++|++|+++|++
T Consensus 442 l~~l~~afSRd~~~k~YVQ~~L~e~~~~l~~~l~~~a~iYVCGp~~~M~~~V~~~L~~il~~~g~~s~~~A~~~l~~l~~ 521 (530)
T PRK06214 442 LTRLSLAWSRDGEEKTYVQDRMRENGAELWKWLEEGAHFYVCGDAKRMAKDVERALVDIVAQFGGRSPDEAVAFVAELKK 521 (530)
T ss_pred ceEEEEEEecCCCCCCchhhHHHHHHHHHHhhhcCCcEEEEeCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 88899999999888999999999988888888877899999999556889999999999999999999999999999999
Q ss_pred CCCeEEeeC
Q 010480 501 TGRYLRDVW 509 (509)
Q Consensus 501 ~~Ry~~dvw 509 (509)
+|||++|||
T Consensus 522 ~gRY~~Dvw 530 (530)
T PRK06214 522 AGRYQADVY 530 (530)
T ss_pred CCCEEEecC
Confidence 999999999
No 13
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=100.00 E-value=2.7e-49 Score=378.62 Aligned_cols=217 Identities=45% Similarity=0.812 Sum_probs=183.9
Q ss_pred cccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCCcEEEEecCCC
Q 010480 103 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 182 (509)
Q Consensus 103 ~~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~ 182 (509)
+++.++|+.|+|++|++|++++++|+|+||+|+++++++.|+|||+|+|+|+|+++.|++++++||+++++.|.+.....
T Consensus 2 ~~~~~~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~~l~Y~pGD~l~V~P~N~~~~V~~~l~~lgl~~d~~v~~~~~~~ 81 (219)
T PF00667_consen 2 PYSRKNPFPATVLENRRLTSPGSDRSTRHIELDLSDSGLSYQPGDHLGVYPPNDPEEVERLLKRLGLDPDEPVTLKPKEQ 81 (219)
T ss_dssp SHBTTB-EEEEEEEEEE-SSTTSSSEEEEEEEE-TTSTG---TT-EEEEE-SSEHHHHHHHHHHHTSGTTSEEEEEESST
T ss_pred CcCCCCCEEEEEEeEEEcCCCCCCceEEEEEEEeCCCCCcccCCCEEEEEccCCHHHHHHHHHHhCCCcceEEEEEeccc
Confidence 35567899999999999999999999999999999889999999999999999999999999999999999999986543
Q ss_pred CCCCCCCCCCCCCCC-cccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHH
Q 010480 183 DGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLE 261 (509)
Q Consensus 183 ~~~~~~~~~~~~~~~-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~d 261 (509)
. .....++| ++|++++|++|+||+++|++.||+.||.|++|++||++|++|++.+|++.|.+|+.+.++|++|
T Consensus 82 ~------~~~~~~~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~t~~d 155 (219)
T PF00667_consen 82 N------NSVKPPFPSPITLRDLLTHYLDITSPPSRSFLRALAEFATDEEEKERLLELASDEGKDDYKDYIWRERRTLLD 155 (219)
T ss_dssp T------SSCCSSSSSSEEHHHHHHHTB-TSSB--HHHHHHHHCTBSSHHHHHHHHHCTSSHHHHHHHHHTTTTTHCHHH
T ss_pred c------cccccccccceeeeeeeeeeeecccccccceeeeeeecCCCHHHHHHHHHhcchhhhhhhhhhhhcccCcHHH
Confidence 2 23456788 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchh
Q 010480 262 VMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTW 326 (509)
Q Consensus 262 vl~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~ 326 (509)
+|.+||++++|+++||++ +|+++||+|||||||..+++.++|||++|.+.++.|+.+.|+||+|
T Consensus 156 il~~fps~~~pl~~ll~~-lp~l~PR~YSIsSS~~~~p~~v~ltv~vv~~~~~~g~~r~G~cS~y 219 (219)
T PF00667_consen 156 ILEDFPSCKPPLEELLEL-LPPLQPRYYSISSSPLVHPNKVHLTVSVVEYPTPRGRIRRGVCSSY 219 (219)
T ss_dssp HHHHSTTBTC-HHHHHHH-S-B---EEEEB-S-TTTSTTEEEEEEEE-EEECTTSSEEE-HHHHH
T ss_pred HHhhCcccCCCHHHhhhh-CCCCCCcceeecccccCCCCEEEEEEEEEEEecCCCCeeEeeCCCC
Confidence 999999999999999987 5999999999999999999999999999999889999999999997
No 14
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=100.00 E-value=1.7e-40 Score=337.43 Aligned_cols=272 Identities=24% Similarity=0.457 Sum_probs=222.0
Q ss_pred ccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCCcEEEEecCCCC
Q 010480 104 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKED 183 (509)
Q Consensus 104 ~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~ 183 (509)
|..++|+.++|+.|.+++.++...+++||+|+.+ ..+.|+||..++|.|+..
T Consensus 85 ~~~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~-~~~~f~~GQfv~I~~~g~--------------------------- 136 (367)
T PLN03115 85 FRPKEPYTGRCLLNTKITGDDAPGETWHMVFSTE-GEIPYREGQSIGVIPDGI--------------------------- 136 (367)
T ss_pred eccCCCeEEEEEeecccccCCCCCceEEEEEcCC-CCCCcCCCCEEEEEcCCc---------------------------
Confidence 5567899999999999999888889999999876 468999999999855310
Q ss_pred CCCCCCCCCCCCCCcccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHH
Q 010480 184 GTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVM 263 (509)
Q Consensus 184 ~~~~~~~~~~~~~~~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl 263 (509)
|.. |
T Consensus 137 --------------------------~~~-------------------------------g------------------- 140 (367)
T PLN03115 137 --------------------------DKN-------------------------------G------------------- 140 (367)
T ss_pred --------------------------CCC-------------------------------C-------------------
Confidence 000 0
Q ss_pred hhCCCCCCChhhhHHhhcCCCCCccccccCCCCC---CCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCc
Q 010480 264 SEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV---APSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCS 340 (509)
Q Consensus 264 ~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~---~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~ 340 (509)
.+..+|+|||||+|.. .++.++|+|+.+.+.+..|....|.||+||+++.+|+.
T Consensus 141 ------------------~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~Gd~----- 197 (367)
T PLN03115 141 ------------------KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGAE----- 197 (367)
T ss_pred ------------------CcCceeeeecCCCCcccCCCCCEEEEEEEEEEeecCCCccCCeehHhhHhhCCCcCE-----
Confidence 1235699999999842 24689999998867666667788999999999777653
Q ss_pred eeeEEEecCCCC-CCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhc-CCCCCeEEEEeccCCCCccccHHHHHHHHHc
Q 010480 341 WAPIFVRQSNFK-LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNFVQS 418 (509)
Q Consensus 341 ~v~v~~~~g~F~-lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~-~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~ 418 (509)
+.|.+|.|.|. +|.++.+|+||||+|||||||+||++++....... ...++++||||||+.+ |++|.+||++|++.
T Consensus 198 -V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~~~~~~v~Lf~G~R~~~-dlly~dELe~l~~~ 275 (367)
T PLN03115 198 -VKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKEK 275 (367)
T ss_pred -EEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhccccccCCCcEEEEEccCCHH-HhhHHHHHHHHHHh
Confidence 77888888765 45566789999999999999999999876532211 1136899999999997 99999999999887
Q ss_pred CC-cCeEEEEEecCCC----CcccchhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHH
Q 010480 419 GA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAE 492 (509)
Q Consensus 419 ~~-~~~~~~a~Sr~~~----~~~yvq~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~ 492 (509)
.. +++++.++||++. .++|||++|.++.+.+++++ ..+++|||||| ++|+++|.++|.++....+ + ++.
T Consensus 276 ~p~~f~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~~~l~~~~~~vYiCGp-~~M~~~V~~~l~~l~~~~g-~---~~~ 350 (367)
T PLN03115 276 APENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKKDNTYVYMCGL-KGMEKGIDDIMVSLAAKDG-I---DWF 350 (367)
T ss_pred CCCCEEEEEEEcCCCcccCCcceeehhHHHHHHHHHHhhcccCCeEEEEeCC-HHHHHHHHHHHHHHHHHhC-c---cHH
Confidence 54 6789999999753 57899999999888888876 35689999999 8999999999999998875 3 578
Q ss_pred HHHHHHHHCCCeEEeeC
Q 010480 493 SMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 493 ~~~~~l~~~~Ry~~dvw 509 (509)
+++++|+++|||+.|||
T Consensus 351 ~~~~~lk~~~r~~~e~y 367 (367)
T PLN03115 351 EYKKQLKKAEQWNVEVY 367 (367)
T ss_pred HHHHHHHHCCCeEEecC
Confidence 99999999999999998
No 15
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=100.00 E-value=2.9e-38 Score=311.30 Aligned_cols=232 Identities=48% Similarity=0.881 Sum_probs=196.1
Q ss_pred CCChhhhHHhhcCC-CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEec
Q 010480 270 KPPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 348 (509)
Q Consensus 270 ~~~~~~~l~~~~p~-~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~ 348 (509)
...+|||+.+.+|. ..+|+|||||+|...++.++|+|+.+.+..+.+..+.|.+|+||+++.+|+ .+.+.++.
T Consensus 31 ~~~pGQ~v~l~~~~~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~lk~Gd------~v~v~~p~ 104 (267)
T cd06182 31 KYQPGDHLGVIPPNPLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQLGA------KVTVFIRP 104 (267)
T ss_pred ccCCCCEEEEecCCCCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhhCCCCC------EEEEEEec
Confidence 45689999765443 468999999999754689999999886655555667799999999876654 37788888
Q ss_pred C-CCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCC-CCccccHHHHHHHHHcCCcCeEEE
Q 010480 349 S-NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNR-KMDYIYEDELNNFVQSGALSQLIV 426 (509)
Q Consensus 349 g-~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~-~~d~ly~~el~~~~~~~~~~~~~~ 426 (509)
| .|.++.+..+|+||||+|||||||+||+++++.....+...++++||||+|+. + |++|.++|++|++.+.+++++.
T Consensus 105 G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~-d~~~~del~~~~~~~~~~~~~~ 183 (267)
T cd06182 105 APSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFAS-DYLYREELQEALKDGALTRLDV 183 (267)
T ss_pred CCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcc-cccHHHHHHHHHhCCCcceEEE
Confidence 8 89998776789999999999999999999987632111223789999999999 6 9999999999999887889999
Q ss_pred EEecCCCC-cccchhhHhhcHHHHHHHHhCCCEEEEecCCcc-hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCe
Q 010480 427 AFSREGPT-KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKS-MARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRY 504 (509)
Q Consensus 427 a~Sr~~~~-~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~-M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry 504 (509)
++||+... ++||++.+....+.+.+.+..++.||+||| +. |+++|.++|.+++.++++++.++|++|+++|++.|||
T Consensus 184 ~~S~~~~~~~~~v~~~l~~~~~~l~~~l~~~~~vyvCGp-~~~m~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (267)
T cd06182 184 AFSREQAEPKVYVQDKLKEHAEELRRLLNEGAHIYVCGD-AKSMAKDVEDALVKIIAKAGGVDESDAEEYLKELEDEGRY 262 (267)
T ss_pred EEccCCCCCceehHHHHHHhHHHHHHHHhcCCEEEEECC-cccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCe
Confidence 99987553 789999987776666665656679999999 78 9999999999999999999999999999999999999
Q ss_pred EEeeC
Q 010480 505 LRDVW 509 (509)
Q Consensus 505 ~~dvw 509 (509)
++|+|
T Consensus 263 ~~~~~ 267 (267)
T cd06182 263 VEDVW 267 (267)
T ss_pred EEecC
Confidence 99999
No 16
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=100.00 E-value=4.6e-36 Score=292.45 Aligned_cols=212 Identities=33% Similarity=0.521 Sum_probs=173.4
Q ss_pred CCChhhhHHhhcCC-CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEe-
Q 010480 270 KPPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR- 347 (509)
Q Consensus 270 ~~~~~~~l~~~~p~-~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~- 347 (509)
..-+|||+.+.++. ..+|+|||||+|. ++.++|+|+.+... . .+.|.+|+||++..+.|+ .+.|..|
T Consensus 31 ~f~pGQ~v~l~~~~~~~~R~YSIas~p~--~~~l~l~Vk~~~~~--~--~~~G~~S~~L~~~~~~Gd-----~v~i~gp~ 99 (245)
T cd06200 31 QWQAGDIAEIGPRHPLPHREYSIASLPA--DGALELLVRQVRHA--D--GGLGLGSGWLTRHAPIGA-----SVALRLRE 99 (245)
T ss_pred CccCCcEEEecCCCCCCCcceEeccCCC--CCEEEEEEEEeccC--C--CCCeeechhhhhCCCCCC-----EEEEEecC
Confidence 34589999765442 5789999999985 47899998776221 1 134899999998754444 4778876
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
+|.|.++. ..+|+||||+|||||||+||++++.... .++++||||+|+.+.|++|.+||++|++.+.+++++.+
T Consensus 100 gg~F~~~~-~~~~~vlIAgGtGIaP~~s~l~~~~~~~-----~~~~~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~~ 173 (245)
T cd06200 100 NPGFHLPD-DGRPLILIGNGTGLAGLRSHLRARARAG-----RHRNWLLFGERQAAHDFFCREELEAWQAAGHLARLDLA 173 (245)
T ss_pred CCcccCCC-CCCCEEEEecCcChHHHHHHHHHHHhcc-----CCCeEEEEecCCccccHhHHHHHHHHHHCCCcceEEEE
Confidence 56798875 5689999999999999999999987532 25799999999984489999999999998888889999
Q ss_pred EecCCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCc-chHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEE
Q 010480 428 FSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAK-SMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLR 506 (509)
Q Consensus 428 ~Sr~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~-~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~ 506 (509)
+|+++..++||++.+.+..+.+.+++..+++||+||| + +|+++|.+.|.+++++ +.+++|+++|||.+
T Consensus 174 ~s~~~~~~~~v~~~l~~~~~~~~~~~~~~~~vy~CGp-~~~m~~~v~~~l~~~~~~----------~~~~~~~~~~r~~~ 242 (245)
T cd06200 174 FSRDQAQKRYVQDRLRAAADELRAWVAEGAAIYVCGS-LQGMAPGVDAVLDEILGE----------EAVEALLAAGRYRR 242 (245)
T ss_pred EccCCCCCcchHHHHHHhHHHHHHHHHCCcEEEEECC-chhhhHHHHHHHHHHHHH----------HHHHHHHHCCCeEE
Confidence 9998777899999998876666655556789999999 7 9999999999999975 24899999999999
Q ss_pred eeC
Q 010480 507 DVW 509 (509)
Q Consensus 507 dvw 509 (509)
|+|
T Consensus 243 d~~ 245 (245)
T cd06200 243 DVY 245 (245)
T ss_pred ecC
Confidence 999
No 17
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=100.00 E-value=1.5e-34 Score=288.27 Aligned_cols=189 Identities=34% Similarity=0.685 Sum_probs=157.2
Q ss_pred CccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEE-ecCCCCCCCCCCCCEEEE
Q 010480 286 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV-RQSNFKLPADAKVPIIMI 364 (509)
Q Consensus 286 pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~-~~g~F~lp~~~~~pii~I 364 (509)
+|+|||+|+|. .+.++|+|+.+ +.|.+|+||+++.+|+. +.+.+ ++|.|.++ +..+|+|||
T Consensus 100 ~R~YSias~p~--~g~l~l~Vk~~---------~~G~~S~~L~~l~~Gd~------v~v~~~~~g~F~~~-~~~~~lvlI 161 (289)
T cd06201 100 PRFYSLASSSS--DGFLEICVRKH---------PGGLCSGYLHGLKPGDT------IKAFIRPNPSFRPA-KGAAPVILI 161 (289)
T ss_pred CceEecCCCCC--CCeEEEEEEeC---------CCccchhhHhhCCCcCE------EEEEeccCCCccCC-CCCCCEEEE
Confidence 69999999984 47899988743 45999999998766543 56665 46789886 446899999
Q ss_pred ccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEecCCCCcccchhhHhh
Q 010480 365 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMME 444 (509)
Q Consensus 365 a~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~~~~yvq~~i~~ 444 (509)
|+|||||||+||+++... .++++||||+|+.+.|++|++||++|++.+.+++++.++||++ .++|||+.+..
T Consensus 162 AgGtGIaP~~s~l~~~~~-------~~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~~~~~~~~~s~~~-~~g~v~~~l~~ 233 (289)
T cd06201 162 GAGTGIAPLAGFIRANAA-------RRPMHLYWGGRDPASDFLYEDELDQYLADGRLTQLHTAFSRTP-DGAYVQDRLRA 233 (289)
T ss_pred ecCcCHHHHHHHHHhhhc-------cCCEEEEEEecCcccchHHHHHHHHHHHcCCCceEEEEECCCC-CcccchhHHHH
Confidence 999999999999987521 2689999999998548999999999998888778888999865 47899999887
Q ss_pred cHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 445 KSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 445 ~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
..+.+..++..++.||+||| ++|+++|.+.|.+|+.+++ + -+.+++++|||.+|||
T Consensus 234 ~~~~l~~~~~~~~~vyiCGp-~~M~~~v~~~L~~i~~~~~-~-------~~~~~~~~g~~~~d~y 289 (289)
T cd06201 234 DAERLRRLIEDGAQIMVCGS-RAMAQGVAAVLEEILAPQP-L-------SLDELKLQGRYAEDVY 289 (289)
T ss_pred hHHHHHHHHHCCcEEEEECC-HHHHHHHHHHHHHHHHHcC-c-------CHHHHHHCCCEEeecC
Confidence 66666665666899999999 8999999999999997654 2 3888999999999998
No 18
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=100.00 E-value=1.3e-35 Score=298.41 Aligned_cols=226 Identities=29% Similarity=0.447 Sum_probs=175.7
Q ss_pred ChhhhHHhhcCC---------CCCccccccCCCCCC---CCeEEEEEEEEEeeCCCCc----cccCcCchhhhhcCCCcc
Q 010480 272 PLGVFFAAIVPR---------LQPRYYSISSSPRVA---PSRIHVTCALVYEKTPTGR----VHKGLCSTWMKNSLPMEK 335 (509)
Q Consensus 272 ~~~~~l~~~~p~---------~~pR~YSIaSsp~~~---~~~l~ltv~~v~~~~~~~~----~~~G~~S~~L~~~~~~~~ 335 (509)
-+|||+.+.+|. ...|+|||||+|... ...++|+|+.+.+.++... .+.|.+|+||+++.+|+
T Consensus 58 ~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd- 136 (307)
T PLN03116 58 WEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPGD- 136 (307)
T ss_pred ecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCCCC-
Confidence 467777654332 147999999999532 2379999998755443211 25799999999965544
Q ss_pred CCCCceeeEEEecCCCCC-CC-CCCCCEEEEccCCccchhHHHHHHHHHHHhh-cCCCCCeEEEEeccCCCCccccHHHH
Q 010480 336 SNDCSWAPIFVRQSNFKL-PA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEA-GAELGPSLLFFGCRNRKMDYIYEDEL 412 (509)
Q Consensus 336 ~~~~~~v~v~~~~g~F~l-p~-~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~-~~~~~~~~L~~G~R~~~~d~ly~~el 412 (509)
.+.|..|.|.|.+ +. +..+|+||||||||||||+||+++++..... ....++++||||+|+.+ |++|.+||
T Consensus 137 -----~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml~~~l~~~~~~~~~~~~v~L~~g~R~~~-d~~~~deL 210 (307)
T PLN03116 137 -----KVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRMFMEDVPAFKFGGLAWLFLGVANSD-SLLYDDEF 210 (307)
T ss_pred -----EEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHHHHHHHhhccccccCCCcEEEEEecCCcc-cchHHHHH
Confidence 3788889899876 43 4567999999999999999999998754311 11126899999999997 99999999
Q ss_pred HHHHHcCC-cCeEEEEEecCCC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCC
Q 010480 413 NNFVQSGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLD 487 (509)
Q Consensus 413 ~~~~~~~~-~~~~~~a~Sr~~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~ 487 (509)
++|++.+. .++++.++||+.. .++||++.|.+..+.++..+..++.||+||| +.|++++.++|.+++.+. |+
T Consensus 211 ~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~l~~~~~~~~~~~~~~~~vYiCGp-~~mv~~v~~~L~~~~~~~-g~- 287 (307)
T PLN03116 211 ERYLKDYPDNFRYDYALSREQKNKKGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGL-KGMMPGIQDTLKRVAEER-GE- 287 (307)
T ss_pred HHHHHhCCCcEEEEEEEccCCcccCCCccchhhHHHHHHHHHHhhhcCCcEEEEeCC-HHHHHHHHHHHHHHHHHc-Cc-
Confidence 99998865 5789999998643 3679999888765555554545789999999 899999999999988765 45
Q ss_pred HHHHHHHHHHHHHCCCeEEeeC
Q 010480 488 SSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 488 ~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
+|+++++.|+++|||++|||
T Consensus 288 --~~~~~~~~l~~~~r~~~~~~ 307 (307)
T PLN03116 288 --SWEEKLSGLKKNKQWHVEVY 307 (307)
T ss_pred --cHHHHHHHHHHcCceEEecC
Confidence 36689999999999999999
No 19
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=100.00 E-value=2.3e-34 Score=299.23 Aligned_cols=269 Identities=24% Similarity=0.411 Sum_probs=211.1
Q ss_pred ccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCCcEEEEecCCCC
Q 010480 104 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKED 183 (509)
Q Consensus 104 ~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~ 183 (509)
|..++|+.++|+.+++++..+...+++||.|+.++....|+||..+.|.++..
T Consensus 137 ~~~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~--------------------------- 189 (411)
T TIGR03224 137 YGVKAPITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGT--------------------------- 189 (411)
T ss_pred ccCCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCc---------------------------
Confidence 56678999999999999987777899999999875567899999887743200
Q ss_pred CCCCCCCCCCCCCCcccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHH
Q 010480 184 GTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVM 263 (509)
Q Consensus 184 ~~~~~~~~~~~~~~~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl 263 (509)
+. +
T Consensus 190 --------------------------~~--------------------------------~------------------- 192 (411)
T TIGR03224 190 --------------------------DA--------------------------------S------------------- 192 (411)
T ss_pred --------------------------Cc--------------------------------C-------------------
Confidence 00 0
Q ss_pred hhCCCCCCChhhhHHhhcCCCCCccccccCCCCCC---CCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCc
Q 010480 264 SEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVA---PSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCS 340 (509)
Q Consensus 264 ~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~---~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~ 340 (509)
..+..+|+|||||+|... .+.++|+|+.+.. ...++...|.+|+||+++.+|+
T Consensus 193 -----------------g~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~v~~-~~~g~~~~G~~S~~L~~lk~Gd------ 248 (411)
T TIGR03224 193 -----------------GKPHYARMYSVASPRNGERPGYNNLALTVKRVTT-DHQGNAVRGVASNYLCDLKKGD------ 248 (411)
T ss_pred -----------------CCcCcceeeeecCCCCccCCCCCEEEEEEEEEEe-cCCCCcCcccchhHHhcCCCcC------
Confidence 011346999999987421 1479999988742 2345566899999999977654
Q ss_pred eeeEEEecCC-CCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcC
Q 010480 341 WAPIFVRQSN-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG 419 (509)
Q Consensus 341 ~v~v~~~~g~-F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~ 419 (509)
.+.|..|.|. |.++....+|+||||+|||||||+||++++......+ ..++++||||+|+.+ |++|.+||++|.+..
T Consensus 249 ~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~~~-~~~~v~L~~G~Rt~~-dl~y~~eL~~l~~~~ 326 (411)
T TIGR03224 249 KVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHG-EGGKLMLFFGARTKE-ELPYFGPLQKLPKDF 326 (411)
T ss_pred EEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhhcC-CCCCEEEEEecCccc-cchHHHHHHHHHhcC
Confidence 3778888776 6676555689999999999999999999987542211 247899999999998 999999999998655
Q ss_pred CcCeEEEEEecCC-CCcccchhhHhhcHHHHHHHHh-CCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 010480 420 ALSQLIVAFSREG-PTKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKN 497 (509)
Q Consensus 420 ~~~~~~~a~Sr~~-~~~~yvq~~i~~~~~~v~~~l~-~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~ 497 (509)
. ++++++||+. ..++|||+.+.+....+.+++. .+++||+||| ++|+++|.++|.++..+.+ +. .++++++
T Consensus 327 ~--~~~~~~sr~~~~~~g~V~d~l~~~~~~v~~ll~~~~~~vYiCGp-~~M~~~v~~~L~~~~~~~~-~~---~~~~~~~ 399 (411)
T TIGR03224 327 I--DINFAFSRTPEQPKRYVQDAIRERAADVAALLKDPNTYIYICGL-KGMEEGVLDAFRDVCATNG-LS---WETLEPR 399 (411)
T ss_pred c--eEEEEeccCCccCcccHhhHHHHhHHHHHHHHhcCCcEEEEECC-HHHHHHHHHHHHHHHHHcC-cC---HHHHHHH
Confidence 3 5677999864 3689999999887777776663 4689999999 8999999999999997653 33 5679999
Q ss_pred HHHCCCeEEeeC
Q 010480 498 LQMTGRYLRDVW 509 (509)
Q Consensus 498 l~~~~Ry~~dvw 509 (509)
|+++|||+.|+|
T Consensus 400 l~~~~r~~~e~~ 411 (411)
T TIGR03224 400 LRAEGRLHLETY 411 (411)
T ss_pred HHHCCCeEEecC
Confidence 999999999999
No 20
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=100.00 E-value=3.5e-35 Score=292.71 Aligned_cols=226 Identities=30% Similarity=0.476 Sum_probs=179.0
Q ss_pred CChhhhHHhhcCC--------CCCccccccCCCCC---CCCeEEEEEEEEEeeCCCC-ccccCcCchhhhhcCCCccCCC
Q 010480 271 PPLGVFFAAIVPR--------LQPRYYSISSSPRV---APSRIHVTCALVYEKTPTG-RVHKGLCSTWMKNSLPMEKSND 338 (509)
Q Consensus 271 ~~~~~~l~~~~p~--------~~pR~YSIaSsp~~---~~~~l~ltv~~v~~~~~~~-~~~~G~~S~~L~~~~~~~~~~~ 338 (509)
..+|||+.+.+|. ..+|+|||||+|.. +++.++|+|+.+...++.. ..+.|.+|+||+++.+|+
T Consensus 41 ~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~Gd---- 116 (286)
T cd06208 41 YLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPGD---- 116 (286)
T ss_pred ccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEEEEEEecCCCCceeccchHHHHhhCCCCC----
Confidence 4479998764342 23699999999853 2468999999885544332 455699999999976654
Q ss_pred CceeeEEEecCCCCCC-CCCCCCEEEEccCCccchhHHHHHHHHHHHhh-cCCCCCeEEEEeccCCCCccccHHHHHHHH
Q 010480 339 CSWAPIFVRQSNFKLP-ADAKVPIIMIGPGTGLAPFRGFLQERFALQEA-GAELGPSLLFFGCRNRKMDYIYEDELNNFV 416 (509)
Q Consensus 339 ~~~v~v~~~~g~F~lp-~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~-~~~~~~~~L~~G~R~~~~d~ly~~el~~~~ 416 (509)
.+.|..|.|.|.+. .+..+|+||||+|||||||+||+++++..... ....++++||||+|+.+ |++|.++|++|+
T Consensus 117 --~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~-d~~~~~el~~l~ 193 (286)
T cd06208 117 --DVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHADYKFTGLAWLFFGVPNSD-SLLYDDELEKYP 193 (286)
T ss_pred --EEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhcccCCCCCEEEEEEecCcc-chhHHHHHHHHH
Confidence 37888888887654 34467999999999999999999998764211 01236899999999998 999999999999
Q ss_pred HcCC-cCeEEEEEecCCC----CcccchhhHhhcHHHHHHHHh-CCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHH
Q 010480 417 QSGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSK 490 (509)
Q Consensus 417 ~~~~-~~~~~~a~Sr~~~----~~~yvq~~i~~~~~~v~~~l~-~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~ 490 (509)
+.+. ++++++++||++. .++||++.+.+..+.+++.+. .++.||+||| ++|+++|.+.|.+++. +..+
T Consensus 194 ~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~i~~~~~~l~~~l~~~~~~vYiCGp-~~m~~~v~~~L~~~~~-----~~~~ 267 (286)
T cd06208 194 KQYPDNFRIDYAFSREQKNADGGKMYVQDRIAEYAEEIWNLLDKDNTHVYICGL-KGMEPGVDDALTSVAE-----GGLA 267 (286)
T ss_pred HhCCCcEEEEEEEcCCCCCCCCCceehhhHHHHhHHHHHHHHhcCCcEEEEeCC-chHHHHHHHHHHHHHh-----ccHH
Confidence 8753 5688999998643 578999999887666666554 4569999999 8999999999999987 2357
Q ss_pred HHHHHHHHHHCCCeEEeeC
Q 010480 491 AESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 491 a~~~~~~l~~~~Ry~~dvw 509 (509)
|++++++|+++|||.+|+|
T Consensus 268 ~~~~~~~~~~~gr~~~~~~ 286 (286)
T cd06208 268 WEEFWESLKKKGRWHVEVY 286 (286)
T ss_pred HHHHHHHHHHcCCeEEecC
Confidence 9999999999999999999
No 21
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.94 E-value=8.5e-27 Score=232.26 Aligned_cols=181 Identities=17% Similarity=0.308 Sum_probs=137.3
Q ss_pred CccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecCCCCCCCCCCCCEEEEc
Q 010480 286 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIG 365 (509)
Q Consensus 286 pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g~F~lp~~~~~pii~Ia 365 (509)
.|+|||+|+|.. .+.++|+|+.........+...|.+|+||+++.+|+ .+.|..|.|.|.++. ..+|+||||
T Consensus 86 ~R~ySias~p~~-~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~i~gP~G~f~l~~-~~~~~vlIA 157 (283)
T cd06188 86 SRAYSLANYPAE-EGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPGD------KVTASGPFGEFFIKD-TDREMVFIG 157 (283)
T ss_pred ccccCcCCCCCC-CCeEEEEEEEeccCCccCCCCCceehhHHhcCCCCC------EEEEECccccccccC-CCCcEEEEE
Confidence 499999999863 478999997653211101235799999999876654 367888889998863 468999999
Q ss_pred cCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEecCC------CCcccch
Q 010480 366 PGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG------PTKEYVQ 439 (509)
Q Consensus 366 ~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~------~~~~yvq 439 (509)
+|||||||+||+++++.... ...+++||||+|+.+ |++|.+||+++++.+..+++++++|++. ..++||+
T Consensus 158 gGtGItP~~s~l~~~~~~~~---~~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~G~v~ 233 (283)
T cd06188 158 GGAGMAPLRSHIFHLLKTLK---SKRKISFWYGARSLK-ELFYQEEFEALEKEFPNFKYHPVLSEPQPEDNWDGYTGFIH 233 (283)
T ss_pred ecccHhHHHHHHHHHHhcCC---CCceEEEEEecCCHH-HhhHHHHHHHHHHHCCCeEEEEEECCCCccCCCCCcceeec
Confidence 99999999999999765321 126899999999997 9999999999998877778888888743 1457888
Q ss_pred hhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHH
Q 010480 440 HKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQ 481 (509)
Q Consensus 440 ~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 481 (509)
+.+.+.. +.... ..+..||+||| ++|++++.+.|.+.+.
T Consensus 234 ~~~~~~~--~~~~~~~~~~~vyiCGP-~~m~~~~~~~l~~~Gv 273 (283)
T cd06188 234 QVLLENY--LKKHPAPEDIEFYLCGP-PPMNSAVIKMLDDLGV 273 (283)
T ss_pred HHHHHHH--hccCCCCCCeEEEEECC-HHHHHHHHHHHHHcCC
Confidence 7765531 11111 23578999999 8999999999987643
No 22
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.94 E-value=1.4e-26 Score=222.21 Aligned_cols=188 Identities=28% Similarity=0.478 Sum_probs=144.8
Q ss_pred CCChhhhHHhhcCC---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEE
Q 010480 270 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 346 (509)
Q Consensus 270 ~~~~~~~l~~~~p~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~ 346 (509)
...+|||+.+.+|. ..+|+|||+|+|.. .+.++|+|+.+ ..|.+|+||+++.+|+ .+.|..
T Consensus 22 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~~~l~vk~~---------~~G~~s~~l~~~~~G~------~v~i~g 85 (223)
T cd00322 22 SFKPGQYVDLHLPGDGRGLRRAYSIASSPDE-EGELELTVKIV---------PGGPFSAWLHDLKPGD------EVEVSG 85 (223)
T ss_pred CcCCCcEEEEEecCCCCcceeeeeccCCCCC-CCeEEEEEEEe---------CCCchhhHHhcCCCCC------EEEEEC
Confidence 34689999766554 57899999999863 47899998765 2599999999886554 477888
Q ss_pred ecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEE
Q 010480 347 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 426 (509)
Q Consensus 347 ~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~ 426 (509)
|.|.|.++....+++||||+|||||||++|++++.... ..++++|+||+|+.+ |++|++||+++++.+.++++++
T Consensus 86 P~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 160 (223)
T cd00322 86 PGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADK----PGGEITLLYGARTPA-DLLFLDELEELAKEGPNFRLVL 160 (223)
T ss_pred CCcccccCcccCCcEEEEecCCchhHHHHHHHHHHhhC----CCCcEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEEE
Confidence 88998766566789999999999999999999987642 237899999999998 9999999999998877778999
Q ss_pred EEecCCCCcccchhhHhhcHHHHHHH-H-hCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 427 AFSREGPTKEYVQHKMMEKSSDIWNM-L-SEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 427 a~Sr~~~~~~yvq~~i~~~~~~v~~~-l-~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+++++.....+.++.+... +.+... . ..+..+|+||| +.|++.+++.|.+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~yvCGp-~~m~~~~~~~L~~~g 214 (223)
T cd00322 161 ALSRESEAKLGPGGRIDRE-AEILALLPDDSGALVYICGP-PAMAKAVREALVSLG 214 (223)
T ss_pred EecCCCCCCCcccceeeHH-HHHHhhcccccCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 9998654333333322210 011111 1 35789999999 899999999997754
No 23
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.94 E-value=1.5e-26 Score=225.98 Aligned_cols=186 Identities=19% Similarity=0.227 Sum_probs=137.7
Q ss_pred CChhhhHHhhcC--C-CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEe
Q 010480 271 PPLGVFFAAIVP--R-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 271 ~~~~~~l~~~~p--~-~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~ 347 (509)
.-+|||+.+-++ . ...|+|||||+|. .+.++|+|+.+ +.|.+|+||+++.+|+ .+.|..|
T Consensus 31 ~~pGQfv~l~~~~~g~~~~R~ySias~p~--~~~l~~~ik~~---------~~G~~S~~L~~l~~Gd------~v~i~gp 93 (248)
T PRK10926 31 FTAGQFTKLGLEIDGERVQRAYSYVNAPD--NPDLEFYLVTV---------PEGKLSPRLAALKPGD------EVQVVSE 93 (248)
T ss_pred CCCCCEEEEEEecCCcEEEeeecccCCCC--CCeEEEEEEEe---------CCCCcChHHHhCCCCC------EEEEecC
Confidence 458999865443 2 2369999999985 35788888754 3599999999866654 3677776
Q ss_pred c-CCCCCCCC-CCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcC-CcCeE
Q 010480 348 Q-SNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALSQL 424 (509)
Q Consensus 348 ~-g~F~lp~~-~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~-~~~~~ 424 (509)
. |.|.++.. ..+|+||||+|||||||+||++++...+ ..++++||||+|+.+ |++|++||++|++.. ..+++
T Consensus 94 ~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~----~~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~v 168 (248)
T PRK10926 94 AAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLE----RFKNLVLVHAARYAA-DLSYLPLMQELEQRYEGKLRI 168 (248)
T ss_pred CCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhC----CCCcEEEEEeCCcHH-HHHHHHHHHHHHHhCcCCEEE
Confidence 5 66777643 3479999999999999999999976432 236899999999997 999999999998875 35578
Q ss_pred EEEEecCCC---CcccchhhHhhc-HHHHHH-HH-hCCCEEEEecCCcchHHHHHHHHHHH
Q 010480 425 IVAFSREGP---TKEYVQHKMMEK-SSDIWN-ML-SEGAYLYVCGDAKSMARDVHRTLHTI 479 (509)
Q Consensus 425 ~~a~Sr~~~---~~~yvq~~i~~~-~~~v~~-~l-~~~~~iyvCGp~~~M~~~v~~~L~~i 479 (509)
+.++||++. .+++|++.+.+. ...... .+ ..+..+|+||| ++|++++.+.|.+.
T Consensus 169 ~~~~s~~~~~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp-~~Mv~~~~~~l~~~ 228 (248)
T PRK10926 169 QTVVSRETAPGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGN-PQMVRDTQQLLKET 228 (248)
T ss_pred EEEECCCCCCCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECC-HHHHHHHHHHHHHh
Confidence 899998543 356777655432 111111 11 24688999999 89999999988764
No 24
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.94 E-value=2.6e-26 Score=220.98 Aligned_cols=185 Identities=20% Similarity=0.297 Sum_probs=146.5
Q ss_pred CCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceeeEEEe
Q 010480 269 AKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 269 ~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~~ 347 (509)
....+|||+.+.+|....|+|||+|.|.. .+.++|+|+.+ ..|.+|++|.+ +.+|+ .+.|..|
T Consensus 24 ~~~~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~l~~~vk~~---------~~G~~s~~l~~~l~~G~------~v~i~gP 87 (224)
T cd06189 24 LDFLAGQYLDLLLDDGDKRPFSIASAPHE-DGEIELHIRAV---------PGGSFSDYVFEELKENG------LVRIEGP 87 (224)
T ss_pred cccCCCCEEEEEcCCCCceeeecccCCCC-CCeEEEEEEec---------CCCccHHHHHHhccCCC------EEEEecC
Confidence 34568999876666667999999999863 47899988754 35889999987 55543 3678888
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
.|.|.++....+++||||+|||||||++|++++.... ...+++|+||+|+.+ |++|++||+++++++.+++++.+
T Consensus 88 ~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 162 (224)
T cd06189 88 LGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQG----SKRPIHLYWGARTEE-DLYLDELLEAWAEAHPNFTYVPV 162 (224)
T ss_pred CccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcC----CCCCEEEEEecCChh-hccCHHHHHHHHHhCCCeEEEEE
Confidence 8999887665789999999999999999999987642 126899999999997 99999999999987777788888
Q ss_pred EecCCC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 428 FSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 428 ~Sr~~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+|++.. .++|+++.+.+.. .+ ..+..+|+||| +.|++++.+.|.+.+
T Consensus 163 ~s~~~~~~~g~~g~v~~~l~~~~---~~--~~~~~v~vCGp-~~m~~~~~~~l~~~G 213 (224)
T cd06189 163 LSEPEEGWQGRTGLVHEAVLEDF---PD--LSDFDVYACGS-PEMVYAARDDFVEKG 213 (224)
T ss_pred eCCCCcCCccccccHHHHHHhhc---cC--ccccEEEEECC-HHHHHHHHHHHHHcC
Confidence 888532 4577777664421 01 24678999999 899999999997754
No 25
>PRK08051 fre FMN reductase; Validated
Probab=99.94 E-value=1.6e-26 Score=223.63 Aligned_cols=184 Identities=17% Similarity=0.212 Sum_probs=141.4
Q ss_pred CCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhh-hcCCCccCCCCceeeEEEec
Q 010480 270 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVRQ 348 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~-~~~~~~~~~~~~~v~v~~~~ 348 (509)
...+|||+.+.++....|+|||+|.|.. ++.++|+|+.+ ..|..|.++. ++.+| + .+.|..|.
T Consensus 29 ~~~pGQ~v~l~~~~~~~r~ySias~p~~-~~~l~~~v~~~---------~~~~~~~~~~~~l~~G-~-----~v~v~gP~ 92 (232)
T PRK08051 29 SFRAGQYLMVVMGEKDKRPFSIASTPRE-KGFIELHIGAS---------ELNLYAMAVMERILKD-G-----EIEVDIPH 92 (232)
T ss_pred ccCCCCEEEEEcCCCcceeecccCCCCC-CCcEEEEEEEc---------CCCcchHHHHHHcCCC-C-----EEEEEcCC
Confidence 4568999876557777899999999863 47899888754 2255566665 44444 3 47788888
Q ss_pred CCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEE
Q 010480 349 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 428 (509)
Q Consensus 349 g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~ 428 (509)
|.|.++.+..+|+||||+||||||+++|+++..... ...+++|+||+|+.+ |.+|.+||+++++.+..++++.++
T Consensus 93 G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~----~~~~v~l~~g~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 167 (232)
T PRK08051 93 GDAWLREESERPLLLIAGGTGFSYARSILLTALAQG----PNRPITLYWGGREED-HLYDLDELEALALKHPNLHFVPVV 167 (232)
T ss_pred CceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhC----CCCcEEEEEEeccHH-HhhhhHHHHHHHHHCCCcEEEEEe
Confidence 998887555689999999999999999999987642 126899999999998 999999999999887777888888
Q ss_pred ecCCC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHH-HHHH
Q 010480 429 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTL-HTIV 480 (509)
Q Consensus 429 Sr~~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L-~~i~ 480 (509)
|++++ .++|+++.+.+.. .+ ..+.++|+||| ++|+++|.+.| .+.+
T Consensus 168 ~~~~~~~~~~~g~v~~~l~~~~---~~--~~~~~vyicGp-~~m~~~v~~~l~~~~G 218 (232)
T PRK08051 168 EQPEEGWQGKTGTVLTAVMQDF---GS--LAEYDIYIAGR-FEMAKIARELFCRERG 218 (232)
T ss_pred CCCCCCcccceeeehHHHHhhc---cC--cccCEEEEECC-HHHHHHHHHHHHHHcC
Confidence 87532 4677777654321 11 13578999999 89999999988 6654
No 26
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.94 E-value=3.9e-26 Score=222.29 Aligned_cols=189 Identities=20% Similarity=0.272 Sum_probs=144.5
Q ss_pred CChhhhHHhhcCCC----CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEE-
Q 010480 271 PPLGVFFAAIVPRL----QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF- 345 (509)
Q Consensus 271 ~~~~~~l~~~~p~~----~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~- 345 (509)
..+|||+.+-+|.. ..|+|||+|.|.. +.++|+|+.+ ..|.+|+||+++.+|+. +.+.
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~--~~i~~~i~~~---------~~G~~s~~l~~l~~Gd~------v~v~~ 87 (241)
T cd06195 25 FQAGQFTKLGLPNDDGKLVRRAYSIASAPYE--ENLEFYIILV---------PDGPLTPRLFKLKPGDT------IYVGK 87 (241)
T ss_pred cCCCCeEEEeccCCCCCeeeecccccCCCCC--CeEEEEEEEe---------cCCCCchHHhcCCCCCE------EEECc
Confidence 45799986544542 4699999999863 7899888754 35999999998766543 6777
Q ss_pred EecCCCCCCCC-CCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHc-CCcCe
Q 010480 346 VRQSNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS-GALSQ 423 (509)
Q Consensus 346 ~~~g~F~lp~~-~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~-~~~~~ 423 (509)
.|.|.|.++.. ..+++||||+|||||||++++++..... ..++++|+||+|+.+ |++|.+||+++++. +..++
T Consensus 88 gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~----~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~ 162 (241)
T cd06195 88 KPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWE----RFDKIVLVHGVRYAE-ELAYQDEIEALAKQYNGKFR 162 (241)
T ss_pred CCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhC----CCCcEEEEEccCCHH-HhhhHHHHHHHHhhcCCCEE
Confidence 78899988765 4689999999999999999999987532 136899999999998 99999999999887 55667
Q ss_pred EEEEEecCCCC---cccchhhHhhc-HHHHHHH-H-hCCCEEEEecCCcchHHHHHHHHHHHHHH
Q 010480 424 LIVAFSREGPT---KEYVQHKMMEK-SSDIWNM-L-SEGAYLYVCGDAKSMARDVHRTLHTIVQE 482 (509)
Q Consensus 424 ~~~a~Sr~~~~---~~yvq~~i~~~-~~~v~~~-l-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~ 482 (509)
++.++|+++.. ++|+++.+.+. ....... + ..+..||+||| ++|++++.+.|.+.+..
T Consensus 163 ~~~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp-~~m~~~~~~~l~~~G~~ 226 (241)
T cd06195 163 YVPIVSREKENGALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGN-PQMIDDTQELLKEKGFS 226 (241)
T ss_pred EEEEECcCCccCCCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCC-HHHHHHHHHHHHHcCCC
Confidence 88888886543 57888766531 1111111 1 24678999999 89999999999886544
No 27
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.94 E-value=2.5e-26 Score=223.20 Aligned_cols=186 Identities=25% Similarity=0.348 Sum_probs=144.5
Q ss_pred CCChhhhHHhhcCCC-CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceeeEEEe
Q 010480 270 KPPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~-~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~~ 347 (509)
...+|||+.+-+|.. ..|+|||+|.|.. .+.++|+|+.+ +.|.+|+||++ +.+|+ .+.|..|
T Consensus 35 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~i~~~---------~~G~~s~~l~~~l~~G~------~v~i~gP 98 (238)
T cd06211 35 EFQAGQYVNLQAPGYEGTRAFSIASSPSD-AGEIELHIRLV---------PGGIATTYVHKQLKEGD------ELEISGP 98 (238)
T ss_pred ccCCCCeEEEEcCCCCCccccccCCCCCC-CCEEEEEEEEC---------CCCcchhhHhhcCCCCC------EEEEECC
Confidence 456899987655654 5899999999863 47899988754 35999999984 55543 3678888
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
.|.|.++.+..+++||||+|||||||++++++....+. ..+++|+||+|+.+ |++|.+||+++++.+..++++.+
T Consensus 99 ~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 173 (238)
T cd06211 99 YGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERGD----TRKITLFFGARTRA-ELYYLDEFEALEKDHPNFKYVPA 173 (238)
T ss_pred ccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcCC----CCcEEEEEecCChh-hhccHHHHHHHHHhCCCeEEEEE
Confidence 89998876556899999999999999999999875421 26899999999998 99999999999987776788888
Q ss_pred EecCCC------CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHH
Q 010480 428 FSREGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQ 481 (509)
Q Consensus 428 ~Sr~~~------~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 481 (509)
+|++.. .++|+++.+.+.. .. ..++..+|+||| +.|++++.+.|.+.+.
T Consensus 174 ~s~~~~~~~~~~~~g~v~~~l~~~~---~~-~~~~~~vyvCGp-~~m~~~~~~~L~~~Gv 228 (238)
T cd06211 174 LSREPPESNWKGFTGFVHDAAKKHF---KN-DFRGHKAYLCGP-PPMIDACIKTLMQGRL 228 (238)
T ss_pred ECCCCCCcCcccccCcHHHHHHHhc---cc-ccccCEEEEECC-HHHHHHHHHHHHHcCC
Confidence 997532 3567776554321 00 014679999999 8999999999987543
No 28
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.94 E-value=2.8e-26 Score=234.51 Aligned_cols=184 Identities=18% Similarity=0.283 Sum_probs=145.1
Q ss_pred CChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecCC
Q 010480 271 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 350 (509)
Q Consensus 271 ~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g~ 350 (509)
..+|||+.+.+|....|+|||+|+|.. .+.++|+|+.+ ..|.+|+||++..+.|+ .+.+..|.|.
T Consensus 132 ~~pGQfv~l~~~~~~~R~ySias~p~~-~~~l~~~ik~~---------~~G~~s~~l~~~l~~G~-----~v~v~gP~G~ 196 (339)
T PRK07609 132 YLAGQYIEFILKDGKRRSYSIANAPHS-GGPLELHIRHM---------PGGVFTDHVFGALKERD-----ILRIEGPLGT 196 (339)
T ss_pred cCCCCeEEEECCCCceeeeecCCCCCC-CCEEEEEEEec---------CCCccHHHHHHhccCCC-----EEEEEcCcee
Confidence 457999977667667899999999863 47899998754 45999999985433333 3778888899
Q ss_pred CCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEec
Q 010480 351 FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSR 430 (509)
Q Consensus 351 F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr 430 (509)
|.++....+|+||||+|||||||+||++++...+ ..++++||||+|+.+ |+++.++|++|+++...++++.++||
T Consensus 197 ~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~----~~~~i~l~~g~r~~~-dl~~~e~l~~~~~~~~~~~~~~~~s~ 271 (339)
T PRK07609 197 FFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKG----IQRPVTLYWGARRPE-DLYLSALAEQWAEELPNFRYVPVVSD 271 (339)
T ss_pred EEecCCCCCCEEEEecCcChhHHHHHHHHHHhcC----CCCcEEEEEecCChH-HhccHHHHHHHHHhCCCeEEEEEecC
Confidence 9987656789999999999999999999987642 126899999999998 99999999999887777788889997
Q ss_pred CC------CCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 431 EG------PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 431 ~~------~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+. +.++|+++.+.+.. .+ ..+..+|+||| +.|++++.+.|.+.+
T Consensus 272 ~~~~~~~~g~~G~v~~~~~~~~---~~--~~~~~vy~CGp-~~m~~~~~~~l~~~G 321 (339)
T PRK07609 272 ALDDDAWTGRTGFVHQAVLEDF---PD--LSGHQVYACGS-PVMVYAARDDFVAAG 321 (339)
T ss_pred CCCCCCccCccCcHHHHHHhhc---cc--ccCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 42 24577877665421 11 14579999999 899999999987743
No 29
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.93 E-value=3.8e-26 Score=233.13 Aligned_cols=183 Identities=19% Similarity=0.317 Sum_probs=144.9
Q ss_pred CCChhhhHHhhcCCCC-CccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceeeEEEe
Q 010480 270 KPPLGVFFAAIVPRLQ-PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~~-pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~~ 347 (509)
...+|||+.+.+|... .|+|||+|+|.. .+.++|+|+.+ ..|.+|+||++ +.+|+ .+.|..|
T Consensus 136 ~~~pGQ~v~l~~~~~~~~R~ySias~p~~-~~~l~~~ik~~---------~~G~~s~~L~~~l~~G~------~v~i~gP 199 (340)
T PRK11872 136 DFLPGQYARLQIPGTDDWRSYSFANRPNA-TNQLQFLIRLL---------PDGVMSNYLRERCQVGD------EILFEAP 199 (340)
T ss_pred CcCCCCEEEEEeCCCCceeecccCCCCCC-CCeEEEEEEEC---------CCCcchhhHhhCCCCCC------EEEEEcC
Confidence 3468999976656543 799999999863 57899998764 35889999985 55543 3778888
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
.|.|.++. ..+|+||||+|||||||+||++++.... ..++++||||+|+++ |++|.+||++|++...+++++.+
T Consensus 200 ~G~f~l~~-~~~~~vliagGtGiaP~~s~l~~~~~~~----~~~~v~l~~g~r~~~-dl~~~~el~~~~~~~~~~~~~~~ 273 (340)
T PRK11872 200 LGAFYLRE-VERPLVFVAGGTGLSAFLGMLDELAEQG----CSPPVHLYYGVRHAA-DLCELQRLAAYAERLPNFRYHPV 273 (340)
T ss_pred cceeEeCC-CCCcEEEEeCCcCccHHHHHHHHHHHcC----CCCcEEEEEecCChH-HhccHHHHHHHHHHCCCcEEEEE
Confidence 89998864 3589999999999999999999987632 126899999999998 99999999999988777889888
Q ss_pred EecCC----CCcccchhhHhhcHHHHHHHHh-CCCEEEEecCCcchHHHHHHHHHHHHH
Q 010480 428 FSREG----PTKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQ 481 (509)
Q Consensus 428 ~Sr~~----~~~~yvq~~i~~~~~~v~~~l~-~~~~iyvCGp~~~M~~~v~~~L~~i~~ 481 (509)
.|+.+ +.++||++.+.+. .+. .+..||+||| ++|++++.+.|.+.+.
T Consensus 274 ~s~~~~~~~g~~g~v~~~l~~~------~l~~~~~~vy~CGp-~~mv~~~~~~L~~~Gv 325 (340)
T PRK11872 274 VSKASADWQGKRGYIHEHFDKA------QLRDQAFDMYLCGP-PPMVEAVKQWLDEQAL 325 (340)
T ss_pred EeCCCCcCCCceeeccHHHHHh------hcCcCCCEEEEeCC-HHHHHHHHHHHHHcCC
Confidence 88643 2467888776542 122 3468999999 9999999999977543
No 30
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.93 E-value=5.2e-26 Score=220.08 Aligned_cols=188 Identities=21% Similarity=0.211 Sum_probs=144.3
Q ss_pred CCChhhhHHhhcCCC-CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEec
Q 010480 270 KPPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 348 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~-~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~ 348 (509)
...+|||+.+.+|.. .+|+|||+|.|.. .+.++|+|+.+ ..|.+|.||++....|+ .+.|..|.
T Consensus 23 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~~~~~vk~~---------~~G~~s~~l~~~~~~g~-----~v~v~gP~ 87 (232)
T cd06190 23 DFLPGQYALLALPGVEGARAYSMANLANA-SGEWEFIIKRK---------PGGAASNALFDNLEPGD-----ELELDGPY 87 (232)
T ss_pred ccCCCCEEEEECCCCCcccCccCCcCCCC-CCEEEEEEEEc---------CCCcchHHHhhcCCCCC-----EEEEECCc
Confidence 356899987666766 7899999999864 57899988754 35889999997533333 36788888
Q ss_pred CCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEE
Q 010480 349 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 428 (509)
Q Consensus 349 g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~ 428 (509)
|.|.++.+..+++||||+|||||||++|++++..... ....+++|+||+|+.+ |++|++||+++.+.+..+++++++
T Consensus 88 G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~--~~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 164 (232)
T cd06190 88 GLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSPY--LSDRPVDLFYGGRTPS-DLCALDELSALVALGARLRVTPAV 164 (232)
T ss_pred ccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhccc--CCCCeEEEEEeecCHH-HHhhHHHHHHHHHhCCCEEEEEEe
Confidence 9888765556899999999999999999999876411 1236899999999998 999999999999887777888888
Q ss_pred ecCCC--------CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 429 SREGP--------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 429 Sr~~~--------~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
|++.. .++|+++.+.+... + ...+..||+||| ++|++++.+.|.+.+
T Consensus 165 s~~~~~~~~~~~~~~g~v~~~l~~~~~---~-~~~~~~vyiCGp-~~m~~~v~~~l~~~g 219 (232)
T cd06190 165 SDAGSGSAAGWDGPTGFVHEVVEATLG---D-RLAEFEFYFAGP-PPMVDAVQRMLMIEG 219 (232)
T ss_pred CCCCCCcCCCccCCcCcHHHHHHhhcc---C-CccccEEEEECC-HHHHHHHHHHHHHhC
Confidence 87532 24566665543211 1 024689999999 899999999987753
No 31
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.93 E-value=5.6e-26 Score=237.41 Aligned_cols=182 Identities=19% Similarity=0.326 Sum_probs=141.5
Q ss_pred CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecCCCCCCCCCCCCEEE
Q 010480 284 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 363 (509)
Q Consensus 284 ~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g~F~lp~~~~~pii~ 363 (509)
...|+|||+|.|.. .+.++|+|+.+......++.+.|.+|+||+++.+|+ .+.|..|.|.|.++ +..+|+||
T Consensus 208 ~~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~f~~~-~~~~~ivl 279 (409)
T PRK05464 208 PVIRAYSMANYPEE-KGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPGD------KVTISGPFGEFFAK-DTDAEMVF 279 (409)
T ss_pred ceeeeeccCCCCCC-CCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCCCC------EEEEEccccCcEec-CCCceEEE
Confidence 35699999999964 468999998765444444567799999999876654 36788888999876 35689999
Q ss_pred EccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEecCCC------Cccc
Q 010480 364 IGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEY 437 (509)
Q Consensus 364 Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~------~~~y 437 (509)
||+|||||||+||+++.+.... ..++++||||+|+.+ |++|.+||+++++.+.++++++++|++.. .+++
T Consensus 280 IAgGtGIaP~~sml~~~l~~~~---~~~~v~L~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~ 355 (409)
T PRK05464 280 IGGGAGMAPMRSHIFDQLKRLK---SKRKISFWYGARSLR-EMFYVEDFDQLAAENPNFKWHVALSDPLPEDNWTGYTGF 355 (409)
T ss_pred EEeccChhHHHHHHHHHHhCCC---CCceEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEEEEEcCCCCCCCCCCccce
Confidence 9999999999999998775422 126899999999998 99999999999988777788888887421 4577
Q ss_pred chhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 438 VQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 438 vq~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+++.+.+.. +.+.. ..+.+||+||| ++|++++.+.|.+.+
T Consensus 356 v~~~l~~~~--l~~~~~~~~~~vyiCGP-~~m~~av~~~L~~~G 396 (409)
T PRK05464 356 IHNVLYENY--LKDHEAPEDCEYYMCGP-PMMNAAVIKMLKDLG 396 (409)
T ss_pred eCHHHHHhh--hhhcCCCCCeEEEEECC-HHHHHHHHHHHHHcC
Confidence 877665431 11111 23579999999 899999999987754
No 32
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.93 E-value=6.7e-26 Score=230.80 Aligned_cols=185 Identities=16% Similarity=0.266 Sum_probs=139.9
Q ss_pred CChhhhHHhhcCC--CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceeeEEEe
Q 010480 271 PPLGVFFAAIVPR--LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 271 ~~~~~~l~~~~p~--~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~~ 347 (509)
.-+|||+.+-++. ...|+|||||.|.. .+.++|+|+.+ ..|.+|+||++ +.+|+ .+.+..|
T Consensus 37 f~pGQfv~l~~~~~~~~~R~ySias~p~~-~~~l~i~Vk~~---------~~G~~S~~L~~~l~~Gd------~v~v~gP 100 (332)
T PRK10684 37 YRAGQYALVSIRNSAETLRAYTLSSTPGV-SEFITLTVRRI---------DDGVGSQWLTRDVKRGD------YLWLSDA 100 (332)
T ss_pred cCCCCEEEEEecCCCEeeeeecccCCCCC-CCcEEEEEEEc---------CCCcchhHHHhcCCCCC------EEEEeCC
Confidence 4589998655453 24599999999863 46799998754 45899999975 55543 3677788
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
.|.|.++....+++||||+|||||||+||+++.+... ...+++|+||+|+.+ |++|.+||++|++.+..+++++.
T Consensus 101 ~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~----~~~~v~l~y~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 175 (332)
T PRK10684 101 MGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNR----PQADVQVIFNVRTPQ-DVIFADEWRQLKQRYPQLNLTLV 175 (332)
T ss_pred ccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcC----CCCCEEEEEeCCChH-HhhhHHHHHHHHHHCCCeEEEEE
Confidence 8999987666689999999999999999999986532 126899999999998 99999999999987666567766
Q ss_pred EecCCCCcccchhhHhhcHHHHHHHHh--CCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 428 FSREGPTKEYVQHKMMEKSSDIWNMLS--EGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 428 ~Sr~~~~~~yvq~~i~~~~~~v~~~l~--~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
.+++. .++|.++++.+. .+.+.+. .+..+|+||| ++|++++.+.|.+.+
T Consensus 176 ~~~~~-~~~~~~grl~~~--~l~~~~~~~~~~~vyiCGP-~~m~~~v~~~l~~~G 226 (332)
T PRK10684 176 AENNA-TEGFIAGRLTRE--LLQQAVPDLASRTVMTCGP-APYMDWVEQEVKALG 226 (332)
T ss_pred eccCC-CCCccccccCHH--HHHHhcccccCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 66533 345556555432 1122121 3678999999 899999999987754
No 33
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.93 E-value=4.6e-26 Score=221.03 Aligned_cols=185 Identities=22% Similarity=0.306 Sum_probs=143.2
Q ss_pred CCChhhhHHhhcCC-CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceeeEEEe
Q 010480 270 KPPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 270 ~~~~~~~l~~~~p~-~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~~ 347 (509)
...+|||+.+.+|. ..+|+|||+|+|.. .+.++|+|+.+ ..|.+|+||++ +.+|+ .+.|..|
T Consensus 34 ~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~-~~~l~~~i~~~---------~~G~~s~~l~~~~~~Gd------~v~i~gP 97 (236)
T cd06210 34 EFVPGQFVEIEIPGTDTRRSYSLANTPNW-DGRLEFLIRLL---------PGGAFSTYLETRAKVGQ------RLNLRGP 97 (236)
T ss_pred CcCCCCEEEEEcCCCccceecccCCCCCC-CCEEEEEEEEc---------CCCccchhhhhCcCCCC------EEEEecC
Confidence 35689999765554 35799999999863 47889888754 35889999998 55543 3678888
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
.|.|.++.+..+++||||+|||||||++|++++.... ...+++||||+|+.+ |++|.++|+++++.+.+++++++
T Consensus 98 ~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 172 (236)
T cd06210 98 LGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWG----EPQEARLFFGVNTEA-ELFYLDELKRLADSLPNLTVRIC 172 (236)
T ss_pred cceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcC----CCceEEEEEecCCHH-HhhhHHHHHHHHHhCCCeEEEEE
Confidence 8999987655679999999999999999999987532 126899999999998 99999999999988777788888
Q ss_pred EecCCC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 428 FSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 428 ~Sr~~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+|++.. ..+++++.+.+. +.+ ......+|+||| +.|++++++.|.+.+
T Consensus 173 ~s~~~~~~~~~~g~~~~~l~~~---l~~-~~~~~~vyicGp-~~m~~~~~~~l~~~G 224 (236)
T cd06210 173 VWRPGGEWEGYRGTVVDALRED---LAS-SDAKPDIYLCGP-PGMVDAAFAAAREAG 224 (236)
T ss_pred EcCCCCCcCCccCcHHHHHHHh---hcc-cCCCcEEEEeCC-HHHHHHHHHHHHHcC
Confidence 887532 456666655432 111 123578999999 899999999988753
No 34
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.93 E-value=8e-26 Score=235.95 Aligned_cols=181 Identities=18% Similarity=0.328 Sum_probs=138.6
Q ss_pred CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecCCCCCCCCCCCCEEEE
Q 010480 285 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 364 (509)
Q Consensus 285 ~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g~F~lp~~~~~pii~I 364 (509)
..|+|||+|+|.. .+.++|+|+.+.+.....+.+.|.+|+||+++.+|+ .+.|..|.|.|.+.. ..+|+|||
T Consensus 205 ~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~i~gP~G~f~l~~-~~~~lvlI 276 (405)
T TIGR01941 205 TVRAYSMANYPAE-KGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKPGD------KVTISGPFGEFFAKD-TDAEMVFI 276 (405)
T ss_pred cceeecCCCCCCC-CCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCCcC------EEEEEeccCCCeecC-CCCCEEEE
Confidence 4699999999974 578999998763222122356799999999876654 377888999998863 46899999
Q ss_pred ccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEecCCC------Ccccc
Q 010480 365 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEYV 438 (509)
Q Consensus 365 a~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~------~~~yv 438 (509)
|+|||||||+||+++.+.... ...+++||||+|+++ |++|.+||+++++.+.++++++++|++.. .++++
T Consensus 277 AgGtGIaP~lsmi~~~l~~~~---~~~~v~l~~g~R~~~-dl~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~v 352 (405)
T TIGR01941 277 GGGAGMAPMRSHIFDQLKRLK---SKRKISFWYGARSLR-EMFYQEDFDQLEAENPNFVWHVALSDPQPEDNWTGYTGFI 352 (405)
T ss_pred ecCcCcchHHHHHHHHHhcCC---CCCeEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEEEEeCCCCccCCCCCcccee
Confidence 999999999999998765321 126899999999998 99999999999988777788888886422 45678
Q ss_pred hhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 439 QHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 439 q~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
++.+.+. .+.+.. ..++.||+||| ++|++++.+.|.+.+
T Consensus 353 ~~~l~~~--~l~~~~~~~~~~vylCGP-~~m~~av~~~L~~~G 392 (405)
T TIGR01941 353 HNVLYEN--YLKDHDAPEDCEFYMCGP-PMMNAAVIKMLEDLG 392 (405)
T ss_pred CHHHHHh--hhcccCCCCCeEEEEeCC-HHHHHHHHHHHHHcC
Confidence 7766532 111111 24678999999 899999999987753
No 35
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.93 E-value=8.8e-26 Score=235.94 Aligned_cols=186 Identities=17% Similarity=0.243 Sum_probs=139.8
Q ss_pred CCChhhhHHhhcC--C--C-CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceee
Q 010480 270 KPPLGVFFAAIVP--R--L-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAP 343 (509)
Q Consensus 270 ~~~~~~~l~~~~p--~--~-~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~ 343 (509)
...+|||+.+.++ . . .+|+|||+|+|. .+.++|+|+.+ .+|.+|+||++ +.+|+ .+.
T Consensus 184 ~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~--~~~l~~~Vk~~---------~~G~~S~~L~~~l~~Gd------~v~ 246 (399)
T PRK13289 184 DFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPN--GKYYRISVKRE---------AGGKVSNYLHDHVNVGD------VLE 246 (399)
T ss_pred CCCCCCeEEEEEecCCccccceeEEEeeeCCC--CCeEEEEEEEC---------CCCeehHHHhhcCCCCC------EEE
Confidence 3458999976543 1 1 249999999986 36888888643 35999999987 65554 367
Q ss_pred EEEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCe
Q 010480 344 IFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQ 423 (509)
Q Consensus 344 v~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~ 423 (509)
|..|.|.|.++.+..+|+||||+|||||||+||+++++... ...+++||||+|+.+ |++|++||++|++.+..++
T Consensus 247 v~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~eL~~l~~~~~~~~ 321 (399)
T PRK13289 247 LAAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQ----PKRPVHFIHAARNGG-VHAFRDEVEALAARHPNLK 321 (399)
T ss_pred EEcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcC----CCCCEEEEEEeCChh-hchHHHHHHHHHHhCCCcE
Confidence 88888999998666789999999999999999999987542 236899999999998 9999999999998876778
Q ss_pred EEEEEecCCCC----cccch-hhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 424 LIVAFSREGPT----KEYVQ-HKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 424 ~~~a~Sr~~~~----~~yvq-~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
++.++|++... ..|.+ .++.. +.+.+.+ ..+..+|+||| ++|++++.+.|.+.+
T Consensus 322 ~~~~~s~~~~~~~~~~~~~~~g~i~~--~~l~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~G 381 (399)
T PRK13289 322 AHTWYREPTEQDRAGEDFDSEGLMDL--EWLEAWLPDPDADFYFCGP-VPFMQFVAKQLLELG 381 (399)
T ss_pred EEEEECCCccccccCCcccccCcccH--HHHHhhCCCCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 89999975321 11111 22221 1222223 24789999999 999999999987754
No 36
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.93 E-value=1.2e-25 Score=217.00 Aligned_cols=182 Identities=23% Similarity=0.338 Sum_probs=143.0
Q ss_pred CCChhhhHHhhcCCC-CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceeeEEEe
Q 010480 270 KPPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~-~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~~ 347 (509)
...+||++.+.+|.. ..|+|||+|.|.. +.++|+|+.+ ..|.+|+||++ +.+|+ .+.|..|
T Consensus 30 ~~~pGQ~v~l~~~~~~~~r~ysi~s~~~~--~~i~~~i~~~---------~~G~~s~~l~~~l~~G~------~v~v~gP 92 (228)
T cd06209 30 AFLPGQYVNLQVPGTDETRSYSFSSAPGD--PRLEFLIRLL---------PGGAMSSYLRDRAQPGD------RLTLTGP 92 (228)
T ss_pred ccCCCCEEEEEeCCCCcccccccccCCCC--CeEEEEEEEc---------CCCcchhhHHhccCCCC------EEEEECC
Confidence 356899997655654 4799999999863 7899888754 35999999998 55543 3678788
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
.|.|.++.. .++++|||+||||||+++++++..... ..++++|+||+|+.+ |++|.++|++|.+....++++.+
T Consensus 93 ~G~~~~~~~-~~~~vlia~GtGIaP~~~ll~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 166 (228)
T cd06209 93 LGSFYLREV-KRPLLMLAGGTGLAPFLSMLDVLAEDG----SAHPVHLVYGVTRDA-DLVELDRLEALAERLPGFSFRTV 166 (228)
T ss_pred cccceecCC-CCeEEEEEcccCHhHHHHHHHHHHhcC----CCCcEEEEEecCCHH-HhccHHHHHHHHHhCCCeEEEEE
Confidence 898887643 489999999999999999999987642 236899999999998 99999999999987777788888
Q ss_pred EecCCC---CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 428 FSREGP---TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 428 ~Sr~~~---~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+|++.. .++|+++.+.+.. ....+..+|+||| +.|++++++.|.+.+
T Consensus 167 ~s~~~~~~~~~g~v~~~~~~~~-----~~~~~~~v~icGp-~~m~~~~~~~l~~~G 216 (228)
T cd06209 167 VADPDSWHPRKGYVTDHLEAED-----LNDGDVDVYLCGP-PPMVDAVRSWLDEQG 216 (228)
T ss_pred EcCCCccCCCcCCccHHHHHhh-----ccCCCcEEEEeCC-HHHHHHHHHHHHHcC
Confidence 987543 4567887665421 1124578999999 899999999998653
No 37
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.93 E-value=1.1e-25 Score=224.57 Aligned_cols=181 Identities=20% Similarity=0.260 Sum_probs=138.0
Q ss_pred CChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecCC
Q 010480 271 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 350 (509)
Q Consensus 271 ~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g~ 350 (509)
..+|||+.+.+|....|+|||+|+|.. ++.++|+|+.+ |.+|.||+++.+|+ .+.|..|.|.
T Consensus 38 ~~pGQ~v~l~~~~~~~~pySias~p~~-~~~l~l~Ik~~-----------G~~S~~L~~l~~Gd------~v~v~gP~G~ 99 (289)
T PRK08345 38 FKPGQFVQVTIPGVGEVPISICSSPTR-KGFFELCIRRA-----------GRVTTVIHRLKEGD------IVGVRGPYGN 99 (289)
T ss_pred cCCCCEEEEEcCCCCceeeEecCCCCC-CCEEEEEEEeC-----------ChHHHHHHhCCCCC------EEEEeCCCCC
Confidence 468999976556656799999999863 47899988642 88999999876654 3678888787
Q ss_pred -CCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEe
Q 010480 351 -FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 429 (509)
Q Consensus 351 -F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~S 429 (509)
|.++....+|+||||+|||||||+||+++++... ...++++|+||+|+.+ |++|++||++|++....++++.++|
T Consensus 100 ~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~---~~~~~v~l~~~~r~~~-d~~~~deL~~l~~~~~~~~~~~~~s 175 (289)
T PRK08345 100 GFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNR---WKYGNITLIYGAKYYE-DLLFYDELIKDLAEAENVKIIQSVT 175 (289)
T ss_pred CCCcccccCceEEEEecccchhHHHHHHHHHHhcC---CCCCcEEEEEecCCHH-HhhHHHHHHHHHhcCCCEEEEEEec
Confidence 6665444579999999999999999999987542 1136899999999997 9999999999988777778888899
Q ss_pred cCCCC---------------cccchhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 430 REGPT---------------KEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 430 r~~~~---------------~~yvq~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
++++. ++++++.+.+. .. ..+..+|+||| ++|++++.+.|.+.+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~------~~~~~~~~vyiCGP-~~m~~~v~~~L~~~G 235 (289)
T PRK08345 176 RDPEWPGCHGLPQGFIERVCKGVVTDLFREA------NTDPKNTYAAICGP-PVMYKFVFKELINRG 235 (289)
T ss_pred CCCCCcCccccccccccccccCchhhhhhhc------CCCccccEEEEECC-HHHHHHHHHHHHHcC
Confidence 85432 22333322211 11 13578999999 899999999997754
No 38
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.93 E-value=1.1e-25 Score=216.57 Aligned_cols=183 Identities=22% Similarity=0.286 Sum_probs=144.0
Q ss_pred CChhhhHHhhcCCCC--CccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceeeEEEe
Q 010480 271 PPLGVFFAAIVPRLQ--PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 271 ~~~~~~l~~~~p~~~--pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~~ 347 (509)
..+||++.+.+|... .|+|||+|.|.. .+.++|+|+.. .+|.+|+||++ +.+|+ .+.|..|
T Consensus 24 ~~pGq~i~l~~~~~~~~~r~ysi~s~~~~-~~~~~~~i~~~---------~~G~~s~~l~~~l~~G~------~v~i~gP 87 (224)
T cd06187 24 FWAGQYVNVTVPGRPRTWRAYSPANPPNE-DGEIEFHVRAV---------PGGRVSNALHDELKVGD------RVRLSGP 87 (224)
T ss_pred cCCCceEEEEcCCCCCcceeccccCCCCC-CCEEEEEEEeC---------CCCcchHHHhhcCccCC------EEEEeCC
Confidence 457999876656543 799999999874 47899888653 35999999998 65543 3678888
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
.|.|.++.+..+++||||+|||||||++|++++.... ...+++|+|++|+.+ |++|.++|+++.+....++++.+
T Consensus 88 ~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~----~~~~v~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ 162 (224)
T cd06187 88 YGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRG----EPRPVHLFFGARTER-DLYDLEGLLALAARHPWLRVVPV 162 (224)
T ss_pred ccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcC----CCCCEEEEEecCChh-hhcChHHHHHHHHhCCCeEEEEE
Confidence 8999887655689999999999999999999987542 236899999999998 99999999999988777778888
Q ss_pred EecCCC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 428 FSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 428 ~Sr~~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
++++.. .++|+++.+.+.. .+ ..++.+|+||| +.|++++++.|++.+
T Consensus 163 ~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~~~v~vcGp-~~~~~~v~~~l~~~G 213 (224)
T cd06187 163 VSHEEGAWTGRRGLVTDVVGRDG---PD--WADHDIYICGP-PAMVDATVDALLARG 213 (224)
T ss_pred eCCCCCccCCCcccHHHHHHHhc---cc--cccCEEEEECC-HHHHHHHHHHHHHcC
Confidence 887532 4678877665421 11 24689999999 899999999987754
No 39
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.93 E-value=2.4e-25 Score=215.39 Aligned_cols=185 Identities=22% Similarity=0.334 Sum_probs=143.1
Q ss_pred CCChhhhHHhhcCCC-CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceeeEEEe
Q 010480 270 KPPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~-~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~~ 347 (509)
...+||++.+.+|.. ..|+|||+|.|.. .+.++|+|+.+ .+|.+|+||++ +.+|+ .+.+..|
T Consensus 29 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~~---------~~G~~s~~l~~~l~~G~------~v~i~gP 92 (232)
T cd06212 29 KFFAGQYVDITVPGTEETRSFSMANTPAD-PGRLEFIIKKY---------PGGLFSSFLDDGLAVGD------PVTVTGP 92 (232)
T ss_pred CcCCCCeEEEEcCCCCcccccccCCCCCC-CCEEEEEEEEC---------CCCchhhHHhhcCCCCC------EEEEEcC
Confidence 346899987655543 5899999999874 47899988753 35899999997 55543 3678888
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
.|.|.++....+++||||+|||||||+++++++.... ..++++|+||+|+.+ |++|.+||+++++....++++.+
T Consensus 93 ~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 167 (232)
T cd06212 93 YGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASG----SDRPVRFFYGARTAR-DLFYLEEIAALGEKIPDFTFIPA 167 (232)
T ss_pred cccceecCCCCCcEEEEecCcchhHHHHHHHHHHhcC----CCCcEEEEEeccchH-HhccHHHHHHHHHhCCCEEEEEE
Confidence 8999887555689999999999999999999987642 136799999999997 99999999999887666778888
Q ss_pred EecCCC------CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHH
Q 010480 428 FSREGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQ 481 (509)
Q Consensus 428 ~Sr~~~------~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 481 (509)
+|++.. ..+++++.+.+.. .+ ..+..||+||| +.|++++.+.|.+.+.
T Consensus 168 ~s~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~~~v~~CGp-~~~~~~v~~~l~~~G~ 221 (232)
T cd06212 168 LSESPDDEGWSGETGLVTEVVQRNE---AT--LAGCDVYLCGP-PPMIDAALPVLEMSGV 221 (232)
T ss_pred ECCCCCCCCCcCCcccHHHHHHhhc---cC--ccCCEEEEECC-HHHHHHHHHHHHHcCC
Confidence 887532 2456666443321 11 13678999999 8999999999887543
No 40
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.93 E-value=1.8e-25 Score=216.26 Aligned_cols=181 Identities=19% Similarity=0.309 Sum_probs=137.9
Q ss_pred CChhhhHHhhcC--C-CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceeeEEE
Q 010480 271 PPLGVFFAAIVP--R-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFV 346 (509)
Q Consensus 271 ~~~~~~l~~~~p--~-~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~ 346 (509)
..+||++.+-++ . ..+|+|||+|.|. .+.++|+|+.+ ..|.+|+||++ +.+|+ .+.|..
T Consensus 28 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~l~~~v~~~---------~~G~~s~~l~~~~~~Gd------~v~i~g 90 (231)
T cd06191 28 FRPGQHVTLKLDFDGEELRRCYSLCSSPA--PDEISITVKRV---------PGGRVSNYLREHIQPGM------TVEVMG 90 (231)
T ss_pred CCCCCeEEEEEecCCeEEeeeeeccCCCC--CCeEEEEEEEC---------CCCccchHHHhcCCCCC------EEEEeC
Confidence 468999865443 1 2479999999986 47899988754 34889999985 65554 367888
Q ss_pred ecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEE
Q 010480 347 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 426 (509)
Q Consensus 347 ~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~ 426 (509)
|.|.|.+++....++||||+||||||++||+++..... ...+++||||+|+.+ |++|.+||+++++.+..++++.
T Consensus 91 P~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 165 (231)
T cd06191 91 PQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTA----PESDFTLIHSARTPA-DMIFAQELRELADKPQRLRLLC 165 (231)
T ss_pred CccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcC----CCCCEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEEE
Confidence 88999987655689999999999999999999987532 126899999999998 9999999999998776778889
Q ss_pred EEecCCCCc------ccchhhHhhcHHHHHHHHh--CCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 427 AFSREGPTK------EYVQHKMMEKSSDIWNMLS--EGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 427 a~Sr~~~~~------~yvq~~i~~~~~~v~~~l~--~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
++||+.... +++.+.+.+ .++. .++.+|+||| +.|++++.+.|.+.+
T Consensus 166 ~~s~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~vyicGp-~~mv~~~~~~l~~~G 220 (231)
T cd06191 166 IFTRETLDSDLLHGRIDGEQSLGA------ALIPDRLEREAFICGP-AGMMDAVETALKELG 220 (231)
T ss_pred EECCCCCCccccCCcccccHHHHH------HhCccccCCeEEEECC-HHHHHHHHHHHHHcC
Confidence 999864322 233322221 1221 3579999999 899999999987643
No 41
>PRK05713 hypothetical protein; Provisional
Probab=99.92 E-value=2.1e-25 Score=225.10 Aligned_cols=177 Identities=16% Similarity=0.188 Sum_probs=134.1
Q ss_pred CChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecC-
Q 010480 271 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS- 349 (509)
Q Consensus 271 ~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g- 349 (509)
..+|||+.+.++....|+|||||.|.. .+.++|+|+.+ +.|.+|+||.++.+|+. +.+..+.|
T Consensus 119 ~~~GQfv~l~~~~~~~R~ySias~p~~-~~~l~~~I~~~---------~~G~~s~~l~~l~~Gd~------v~l~~p~gg 182 (312)
T PRK05713 119 YRAGQHLVLWTAGGVARPYSLASLPGE-DPFLEFHIDCS---------RPGAFCDAARQLQVGDL------LRLGELRGG 182 (312)
T ss_pred cCCCCEEEEecCCCcccccccCcCCCC-CCeEEEEEEEc---------CCCccchhhhcCCCCCE------EEEccCCCC
Confidence 458999976556556899999999864 47899988754 35999999987766543 56666665
Q ss_pred CCCCCCC-CCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEE
Q 010480 350 NFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 428 (509)
Q Consensus 350 ~F~lp~~-~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~ 428 (509)
.|.++.+ ..+|+||||||||||||+||+++++..+. .++++|+||+|+.+ |++|.+||++|++.+.+++++.+.
T Consensus 183 ~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~----~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~ 257 (312)
T PRK05713 183 ALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQGH----QGPIRLLHLARDSA-GHYLAEPLAALAGRHPQLSVELVT 257 (312)
T ss_pred ceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcCC----CCcEEEEEEcCchH-HhhhHHHHHHHHHHCCCcEEEEEE
Confidence 5666644 46899999999999999999999875421 26899999999998 999999999999877666777766
Q ss_pred ecCCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 429 SREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 429 Sr~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
++ ++++.+.+. .. ...+.++|+||| ++|++++.+.|.+.+
T Consensus 258 ~~------~~~~~l~~~----~~-~~~~~~vyiCGp-~~mv~~~~~~L~~~G 297 (312)
T PRK05713 258 AA------QLPAALAEL----RL-VSRQTMALLCGS-PASVERFARRLYLAG 297 (312)
T ss_pred Cc------chhhhhhhc----cC-CCCCeEEEEeCC-HHHHHHHHHHHHHcC
Confidence 53 233333211 00 123578999999 999999999997653
No 42
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.92 E-value=1.2e-24 Score=209.08 Aligned_cols=185 Identities=19% Similarity=0.233 Sum_probs=139.4
Q ss_pred CCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhc-CCCccCCCCceeeEEEec
Q 010480 270 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNS-LPMEKSNDCSWAPIFVRQ 348 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~-~~~~~~~~~~~v~v~~~~ 348 (509)
...+|||+.+-+|....|+|||+|+|.. .+.++|+|+.+ ..|.+|+||++. .+|+ .+.|..|.
T Consensus 23 ~~~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~~~~~i~~~---------~~G~~s~~l~~~~~~G~------~v~i~gP~ 86 (222)
T cd06194 23 PYLPGQYVNLRRAGGLARSYSPTSLPDG-DNELEFHIRRK---------PNGAFSGWLGEEARPGH------ALRLQGPF 86 (222)
T ss_pred CcCCCCEEEEEcCCCCceeeecCCCCCC-CCEEEEEEEec---------cCCccchHHHhccCCCC------EEEEecCc
Confidence 3568999976667777899999999874 36788888653 358999999985 5543 36788888
Q ss_pred CCCCCCC-CCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 349 SNFKLPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 349 g~F~lp~-~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
|.|.+.. ...++++|||+|||||||++|+++++... ..++++||||+|+.+ |++|++||++|++.+..++++.+
T Consensus 87 G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 161 (222)
T cd06194 87 GQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQG----HQGEIRLVHGARDPD-DLYLHPALLWLAREHPNFRYIPC 161 (222)
T ss_pred CCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcC----CCccEEEEEecCChh-hccCHHHHHHHHHHCCCeEEEEE
Confidence 8887653 45679999999999999999999987542 237899999999998 99999999999987666678888
Q ss_pred EecCCCCc-ccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 428 FSREGPTK-EYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 428 ~Sr~~~~~-~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
.+++.... ++..+.+.+. +. .+..+..+|+||| +.|++++++.|.+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~vyicGp-~~m~~~~~~~L~~~G 210 (222)
T cd06194 162 VSEGSQGDPRVRAGRIAAH---LP-PLTRDDVVYLCGA-PSMVNAVRRRAFLAG 210 (222)
T ss_pred EccCCCCCcccccchhhhh---hc-cccCCCEEEEeCC-HHHHHHHHHHHHHcC
Confidence 88754332 1111112111 11 1234689999999 899999999998754
No 43
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.92 E-value=8.1e-25 Score=211.06 Aligned_cols=181 Identities=23% Similarity=0.344 Sum_probs=138.8
Q ss_pred CChhhhHHhhcCCC-CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecC
Q 010480 271 PPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 349 (509)
Q Consensus 271 ~~~~~~l~~~~p~~-~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g 349 (509)
..+|||+.+.+|.. ..|+|||+|+|.. .+.++|+|+.+ ..|.+|+||.+..+.|+ .+.|..|.|
T Consensus 28 ~~pGQ~~~l~~~~~~~~r~ysi~s~~~~-~~~l~~~vk~~---------~~G~~s~~l~~~l~~G~-----~v~i~gP~G 92 (227)
T cd06213 28 YKAGQYAELTLPGLPAARSYSFANAPQG-DGQLSFHIRKV---------PGGAFSGWLFGADRTGE-----RLTVRGPFG 92 (227)
T ss_pred cCCCCEEEEEeCCCCcccccccCCCCCC-CCEEEEEEEEC---------CCCcchHHHHhcCCCCC-----EEEEeCCCc
Confidence 45899987655554 4899999999863 57899988653 35889999976433333 367888889
Q ss_pred CCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHc-CCcCeEEEEE
Q 010480 350 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS-GALSQLIVAF 428 (509)
Q Consensus 350 ~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~-~~~~~~~~a~ 428 (509)
.|.++. ..+++||||+|||||||++|++++.... ..++++++||+|+++ |++|.+||+++++. ...++++.++
T Consensus 93 ~~~~~~-~~~~~lliagG~GiaP~~~~~~~~~~~~----~~~~i~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~~ 166 (227)
T cd06213 93 DFWLRP-GDAPILCIAGGSGLAPILAILEQARAAG----TKRDVTLLFGARTQR-DLYALDEIAAIAARWRGRFRFIPVL 166 (227)
T ss_pred ceEeCC-CCCcEEEEecccchhHHHHHHHHHHhcC----CCCcEEEEEeeCCHH-HhccHHHHHHHHHhccCCeEEEEEe
Confidence 998864 3578999999999999999999987532 136799999999998 99999999999865 3456788888
Q ss_pred ecCCC------CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 429 SREGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 429 Sr~~~------~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
|++.. ..+++++.+.+. +..+..+|+||| +.|++++.+.|.+.+
T Consensus 167 s~~~~~~~~~g~~g~v~~~l~~~-------~~~~~~v~~CGp-~~~~~~~~~~l~~~G 216 (227)
T cd06213 167 SEEPADSSWKGARGLVTEHIAEV-------LLAATEAYLCGP-PAMIDAAIAVLRALG 216 (227)
T ss_pred cCCCCCCCccCCcccHHHHHHhh-------ccCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 87532 235676655432 135689999999 899999999887753
No 44
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.92 E-value=1.6e-24 Score=212.22 Aligned_cols=184 Identities=21% Similarity=0.315 Sum_probs=141.3
Q ss_pred CCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEec
Q 010480 269 AKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 348 (509)
Q Consensus 269 ~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~ 348 (509)
.+..+||++.+.+|....|+|||+|+|.. .+.++|+|+. .|.+|+||+++.+|+ .+.+..|.
T Consensus 26 ~~~~pGQ~i~l~~~~~~~~pySi~s~~~~-~~~l~~~Ik~-----------~G~~S~~L~~l~~G~------~v~i~gP~ 87 (253)
T cd06221 26 FTFKPGQFVMLSLPGVGEAPISISSDPTR-RGPLELTIRR-----------VGRVTEALHELKPGD------TVGLRGPF 87 (253)
T ss_pred CCcCCCCEEEEEcCCCCccceEecCCCCC-CCeEEEEEEe-----------CChhhHHHHcCCCCC------EEEEECCc
Confidence 34568999876666556799999999963 4789988863 288999999766543 36788887
Q ss_pred CC-CCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 349 SN-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 349 g~-F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
|. |.++....+|+||||+||||||+++|+++++.... ..++++|||++|+.+ |++|+++|+++.+. .++++.++
T Consensus 88 G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~---~~~~i~Li~~~r~~~-~~~~~~~L~~l~~~-~~~~~~~~ 162 (253)
T cd06221 88 GNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNRE---DYGKVTLLYGARTPE-DLLFKEELKEWAKR-SDVEVILT 162 (253)
T ss_pred CCCcccccccCCeEEEEccccchhHHHHHHHHHHhccc---cCCcEEEEEecCChH-HcchHHHHHHHHhc-CCeEEEEE
Confidence 87 66554356899999999999999999999886421 136899999999998 99999999999987 55678888
Q ss_pred EecCCC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHH
Q 010480 428 FSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQ 481 (509)
Q Consensus 428 ~Sr~~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 481 (509)
+|++.. ..+++++.+.+... + ..+..||+||| +.|++++.+.|.+.+.
T Consensus 163 ~s~~~~~~~~~~g~v~~~l~~~~~---~--~~~~~vyicGp-~~mv~~~~~~L~~~Gv 214 (253)
T cd06221 163 VDRAEEGWTGNVGLVTDLLPELTL---D--PDNTVAIVCGP-PIMMRFVAKELLKLGV 214 (253)
T ss_pred eCCCCCCccCCccccchhHHhcCC---C--cCCcEEEEECC-HHHHHHHHHHHHHcCC
Confidence 887532 34667665544210 0 24689999999 9999999999987643
No 45
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.91 E-value=2.5e-24 Score=210.28 Aligned_cols=182 Identities=20% Similarity=0.295 Sum_probs=138.8
Q ss_pred CCChhhhHHhhcC--C---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceee
Q 010480 270 KPPLGVFFAAIVP--R---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAP 343 (509)
Q Consensus 270 ~~~~~~~l~~~~p--~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~ 343 (509)
...+||++.+.++ . ...|+|||+|.|.. +.++|+|+.+ ..|.+|+||++ +.+|+ .+.
T Consensus 36 ~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~--~~l~~~ik~~---------~~G~~s~~l~~~~~~Gd------~v~ 98 (247)
T cd06184 36 PFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNG--DYYRISVKRE---------PGGLVSNYLHDNVKVGD------VLE 98 (247)
T ss_pred CCCCCCEEEEEEecCCCCCceeEEeEeccCCCC--CeEEEEEEEc---------CCCcchHHHHhcCCCCC------EEE
Confidence 3457899866543 2 35799999999863 4788877643 35999999998 66654 367
Q ss_pred EEEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCe
Q 010480 344 IFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQ 423 (509)
Q Consensus 344 v~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~ 423 (509)
|..|.|.|.++.+..+++||||+|||||||+++++++.... ...+++||||+|+++ +.+|+++|+++++.+.+++
T Consensus 99 i~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~----~~~~i~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~ 173 (247)
T cd06184 99 VSAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEG----PGRPVTFIHAARNSA-VHAFRDELEELAARLPNLK 173 (247)
T ss_pred EEcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcC----CCCcEEEEEEcCchh-hHHHHHHHHHHHhhCCCeE
Confidence 88888999987645689999999999999999999987642 136899999999998 8999999999988766678
Q ss_pred EEEEEecCCCC--------cccchhhHhhcHHHHHHH-HhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 424 LIVAFSREGPT--------KEYVQHKMMEKSSDIWNM-LSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 424 ~~~a~Sr~~~~--------~~yvq~~i~~~~~~v~~~-l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+++++|+.... .++++.. .+.+. ...+..||+||| +.|++++.+.|.+.+
T Consensus 174 ~~~~~s~~~~~~~~~~~~~~g~~~~~------~l~~~~~~~~~~v~icGp-~~m~~~v~~~l~~~G 232 (247)
T cd06184 174 LHVFYSEPEAGDREEDYDHAGRIDLA------LLRELLLPADADFYLCGP-VPFMQAVREGLKALG 232 (247)
T ss_pred EEEEECCCCcccccccccccCccCHH------HHhhccCCCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 88899886432 2333321 12221 135789999999 899999999997753
No 46
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.91 E-value=3.1e-24 Score=207.46 Aligned_cols=187 Identities=18% Similarity=0.280 Sum_probs=137.0
Q ss_pred CCChhhhHHhhcCC---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceeeEE
Q 010480 270 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIF 345 (509)
Q Consensus 270 ~~~~~~~l~~~~p~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~ 345 (509)
...+||++.+.+|. ...|+|||+|.|.. .+.++|+|+.. .+|.+|.||++ +.+|+ .+.|.
T Consensus 27 ~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~-~~~l~~~vk~~---------~~G~~s~~l~~~~~~G~------~v~i~ 90 (231)
T cd06215 27 AYKPGQFLTLELEIDGETVYRAYTLSSSPSR-PDSLSITVKRV---------PGGLVSNWLHDNLKVGD------ELWAS 90 (231)
T ss_pred CcCCCCeEEEEEecCCCeEEEeeecccCCCC-CCcEEEEEEEc---------CCCcchHHHHhcCCCCC------EEEEE
Confidence 34689998655442 23699999999863 46799888754 34889999974 55543 36788
Q ss_pred EecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEE
Q 010480 346 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 425 (509)
Q Consensus 346 ~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~ 425 (509)
.|.|.|.++.....++||||+|||||||++|+++..... ...+++|||++|+++ |++|.++|+++.++...++++
T Consensus 91 gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~ 165 (231)
T cd06215 91 GPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTR----PDADIVFIHSARSPA-DIIFADELEELARRHPNFRLH 165 (231)
T ss_pred cCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcC----CCCcEEEEEecCChh-hhhHHHHHHHHHHHCCCeEEE
Confidence 888999887554689999999999999999999987532 126799999999998 999999999999876666788
Q ss_pred EEEecCCCC-cccchhhHhhcHHHHHHHHh--CCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 426 VAFSREGPT-KEYVQHKMMEKSSDIWNMLS--EGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 426 ~a~Sr~~~~-~~yvq~~i~~~~~~v~~~l~--~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
.+.+++... ..+.++++... .+.+.+. .+..+|+||| ++|++++.+.|.+.+
T Consensus 166 ~~~~~~~~~~~~~~~g~~~~~--~l~~~~~~~~~~~v~icGp-~~m~~~~~~~l~~~g 220 (231)
T cd06215 166 LILEQPAPGAWGGYRGRLNAE--LLALLVPDLKERTVFVCGP-AGFMKAVKSLLAELG 220 (231)
T ss_pred EEEccCCCCcccccCCcCCHH--HHHHhcCCccCCeEEEECC-HHHHHHHHHHHHHcC
Confidence 888875431 11222222211 1112221 3468999999 999999999987653
No 47
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.91 E-value=1.6e-24 Score=218.14 Aligned_cols=185 Identities=11% Similarity=0.148 Sum_probs=130.8
Q ss_pred CCChhhhHHhhcC-C-----CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceee
Q 010480 270 KPPLGVFFAAIVP-R-----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAP 343 (509)
Q Consensus 270 ~~~~~~~l~~~~p-~-----~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~ 343 (509)
...+||++++..+ . ...|+|||+|+|.. .+.++|+|+.+ ..|.+|+||+++.+|+. +.
T Consensus 81 ~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~-~~~le~~IK~~---------~~G~~S~~L~~lk~Gd~------v~ 144 (325)
T PTZ00274 81 NLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHT-KGYFDIIVKRK---------KDGLMTNHLFGMHVGDK------LL 144 (325)
T ss_pred CCCCccEEEEEEecCCCCCCEEEEeeecCCCCCC-CCeEEEEEEEc---------CCCcccHHHhcCCCCCE------EE
Confidence 4568899864333 1 23699999999964 57899999864 46999999998766543 45
Q ss_pred EEEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhh--cCCCCCeEEEEeccCCCCccccHHHHHHHHHcCC-
Q 010480 344 IFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEA--GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA- 420 (509)
Q Consensus 344 v~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~--~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~- 420 (509)
|..+.+.|.++.+..+++||||||||||||+||+++.+..+.. ..+..+++|+||+|+.+ |++|++||++|++...
T Consensus 145 v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~-di~~~~eL~~La~~~~~ 223 (325)
T PTZ00274 145 FRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTER-HILLKGLFDDLARRYSN 223 (325)
T ss_pred EeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHH-HhhHHHHHHHHHHhCCC
Confidence 5554445555444457999999999999999999998764211 11225899999999998 9999999999988654
Q ss_pred cCeEEEEEecCC------CCcccchhhHhhcHHHHHHHHh-CCCEEEEecCCcchHHHHHHH
Q 010480 421 LSQLIVAFSREG------PTKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRT 475 (509)
Q Consensus 421 ~~~~~~a~Sr~~------~~~~yvq~~i~~~~~~v~~~l~-~~~~iyvCGp~~~M~~~v~~~ 475 (509)
.++++.++|+.. ...++|.+.+... +..... .+..+|+||| ++|+++|...
T Consensus 224 ~f~v~~~ls~~~~~~~w~g~~G~V~~~ll~~---~~~~~~~~~~~vylCGP-p~Mm~av~~~ 281 (325)
T PTZ00274 224 RFKVYYTIDQAVEPDKWNHFLGYVTKEMVRR---TMPAPEEKKKIIMLCGP-DQLLNHVAGT 281 (325)
T ss_pred cEEEEEEeCCCCcccCCCCCCCccCHHHHHH---hcCCCccCCcEEEEeCC-HHHHHHhcCC
Confidence 567888888642 1345565443211 000011 2357999999 9999998654
No 48
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.91 E-value=2e-24 Score=210.47 Aligned_cols=184 Identities=23% Similarity=0.344 Sum_probs=139.9
Q ss_pred CChhhhHHhhcC--C-CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceeeEEE
Q 010480 271 PPLGVFFAAIVP--R-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFV 346 (509)
Q Consensus 271 ~~~~~~l~~~~p--~-~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~ 346 (509)
..+||++.+.+| . ..+|+|||+|.|....+.++|+|+.+ .+|.+|.||++ +.+|+ .+.|..
T Consensus 46 ~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~~~ik~~---------~~G~~s~~l~~~~~~Gd------~v~i~g 110 (243)
T cd06216 46 HRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITLTVKAQ---------PDGLVSNWLVNHLAPGD------VVELSQ 110 (243)
T ss_pred cCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEEEEEEEc---------CCCcchhHHHhcCCCCC------EEEEEC
Confidence 458999865543 2 34699999999851247899988754 34889999986 54543 367888
Q ss_pred ecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEE
Q 010480 347 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 426 (509)
Q Consensus 347 ~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~ 426 (509)
|.|.|.++.+..+++||||+||||||++|++++..... ..++++||||+|+.+ |.+|.+||+++.+++..++++.
T Consensus 111 P~G~f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~----~~~~i~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 185 (243)
T cd06216 111 PQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRTLLARG----PTADVVLLYYARTRE-DVIFADELRALAAQHPNLRLHL 185 (243)
T ss_pred CceeeecCCCCCCCEEEEecCccHhHHHHHHHHHHhcC----CCCCEEEEEEcCChh-hhHHHHHHHHHHHhCCCeEEEE
Confidence 88999998665689999999999999999999987532 236899999999998 9999999999987766667888
Q ss_pred EEecCCCCcccchhhHhhcHHHHHHHH--hCCCEEEEecCCcchHHHHHHHHHHHHHH
Q 010480 427 AFSREGPTKEYVQHKMMEKSSDIWNML--SEGAYLYVCGDAKSMARDVHRTLHTIVQE 482 (509)
Q Consensus 427 a~Sr~~~~~~yvq~~i~~~~~~v~~~l--~~~~~iyvCGp~~~M~~~v~~~L~~i~~~ 482 (509)
.+|++ ...+++..... .+.+ ..++.+|+||| +.|++++.+.|.+.+..
T Consensus 186 ~~s~~-~~~g~~~~~~l------~~~~~~~~~~~vyvcGp-~~m~~~~~~~l~~~Gv~ 235 (243)
T cd06216 186 LYTRE-ELDGRLSAAHL------DAVVPDLADRQVYACGP-PGFLDAAEELLEAAGLA 235 (243)
T ss_pred EEcCC-ccCCCCCHHHH------HHhccCcccCeEEEECC-HHHHHHHHHHHHHCCCc
Confidence 88875 33455433221 1121 13579999999 89999999999875543
No 49
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.91 E-value=2.8e-24 Score=220.87 Aligned_cols=190 Identities=18% Similarity=0.325 Sum_probs=137.4
Q ss_pred CCChhhhHHhhcCC---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEE
Q 010480 270 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 346 (509)
Q Consensus 270 ~~~~~~~l~~~~p~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~ 346 (509)
...+|||+.+.++. ...|+|||+|+|. ++.++|+|+.+ ..|.+|+||++..+.|+ .+.|..
T Consensus 32 ~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~--~~~l~i~vk~~---------~~G~~S~~l~~~l~~Gd-----~v~v~g 95 (352)
T TIGR02160 32 RFAPGQHLTLRREVDGEELRRSYSICSAPA--PGEIRVAVKKI---------PGGLFSTWANDEIRPGD-----TLEVMA 95 (352)
T ss_pred CCCCCCeEEEEEecCCcEeeeeccccCCCC--CCcEEEEEEEe---------CCCcchHHHHhcCCCCC-----EEEEeC
Confidence 34689999765431 2469999999984 47899998765 34899999985444343 367777
Q ss_pred ecCCCCCCCCC--CCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCC-cCe
Q 010480 347 RQSNFKLPADA--KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQ 423 (509)
Q Consensus 347 ~~g~F~lp~~~--~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~-~~~ 423 (509)
|.|.|.++.+. .+++||||+|||||||+||+++++... ...+++|+||+|+++ |++|.+||+++++.+. .++
T Consensus 96 P~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~----~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~ 170 (352)
T TIGR02160 96 PQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAE----PRSTFTLVYGNRRTA-SVMFAEELADLKDKHPQRFH 170 (352)
T ss_pred CceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcC----CCceEEEEEEeCCHH-HHHHHHHHHHHHHhCcCcEE
Confidence 88999886542 379999999999999999999987642 126899999999998 9999999999987654 467
Q ss_pred EEEEEecCCCCcccchhhHhh-cHHHHH-HHH--hCCCEEEEecCCcchHHHHHHHHHHHHH
Q 010480 424 LIVAFSREGPTKEYVQHKMME-KSSDIW-NML--SEGAYLYVCGDAKSMARDVHRTLHTIVQ 481 (509)
Q Consensus 424 ~~~a~Sr~~~~~~yvq~~i~~-~~~~v~-~~l--~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 481 (509)
++.++|++.....+.+.++.. ....+. ++. .....+|+||| ++|++++++.|.+.+.
T Consensus 171 ~~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~Gv 231 (352)
T TIGR02160 171 LAHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGP-QAMVDDAEQALTGLGV 231 (352)
T ss_pred EEEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEECC-HHHHHHHHHHHHHcCC
Confidence 888889864322222233211 111111 111 23468999999 8999999999987643
No 50
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.91 E-value=9.7e-24 Score=206.30 Aligned_cols=182 Identities=18% Similarity=0.333 Sum_probs=134.6
Q ss_pred CChhhhHHhhcCCC---CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEe
Q 010480 271 PPLGVFFAAIVPRL---QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 271 ~~~~~~l~~~~p~~---~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~ 347 (509)
..+|||+.+-++.- ..|.|||+|+|.. ++.+.|+|++. ..|.+|+||++..+.|+ .+.|..|
T Consensus 35 f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~-~~~~~isVk~~---------~~G~~S~~Lh~~lk~Gd-----~l~v~~P 99 (266)
T COG1018 35 FEPGQYITVGLPNGGEPLLRAYSLSSAPDE-DSLYRISVKRE---------DGGGGSNWLHDHLKVGD-----TLEVSAP 99 (266)
T ss_pred cCCCCeEEEEecCCCceeeEEEEeccCCCC-CceEEEEEEEe---------CCCcccHHHHhcCCCCC-----EEEEecC
Confidence 46899987666654 6899999999984 46888888754 34899999994444443 3778888
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
.|.|.++..+..+++|||+|||||||+||+++..... . .+++|+|++|+.+ |..|++| +.+.++.........
T Consensus 100 ~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~----~-~~v~l~h~~R~~~-~~af~de-~~l~~~~~~~~~~~~ 172 (266)
T COG1018 100 AGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRG----P-ADVVLVHAARTPA-DLAFRDE-LELAAELPNALLLGL 172 (266)
T ss_pred CCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhC----C-CCEEEEEecCChh-hcchhhH-HHHHhhCCCCeeEEE
Confidence 8999998766679999999999999999999987642 2 6799999999998 9999999 888877654333333
Q ss_pred EecCCCCcccch-hhHhhcHHHHHHHHhCC-CEEEEecCCcchHHHHHHHHHHHHHH
Q 010480 428 FSREGPTKEYVQ-HKMMEKSSDIWNMLSEG-AYLYVCGDAKSMARDVHRTLHTIVQE 482 (509)
Q Consensus 428 ~Sr~~~~~~yvq-~~i~~~~~~v~~~l~~~-~~iyvCGp~~~M~~~v~~~L~~i~~~ 482 (509)
+.......+|.. .++. ...... .++|+||| .+|+++|+..|.++...
T Consensus 173 ~~~~~~~~g~~~~~~l~-------~~~~~~~r~~y~CGp-~~fm~av~~~l~~~g~~ 221 (266)
T COG1018 173 YTERGKLQGRIDVSRLL-------SAAPDGGREVYLCGP-GPFMQAVRLALEALGVP 221 (266)
T ss_pred EEecCCccccccHHHHh-------ccCCCCCCEEEEECC-HHHHHHHHHHHHHcCCC
Confidence 332222222322 1111 112223 89999999 79999999999887644
No 51
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.91 E-value=4.4e-24 Score=204.60 Aligned_cols=178 Identities=18% Similarity=0.261 Sum_probs=132.5
Q ss_pred CCChhhhHHhhcCC----CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEE
Q 010480 270 KPPLGVFFAAIVPR----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF 345 (509)
Q Consensus 270 ~~~~~~~l~~~~p~----~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~ 345 (509)
...+|||+.+.++. ...|+|||+|+|. .+.++|+|+.+. ..|.+|.||+++.+|+. +.+.
T Consensus 27 ~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~--~~~l~~~vk~~~--------~~g~~s~~l~~l~~G~~------v~i~ 90 (218)
T cd06196 27 DFTPGQATEVAIDKPGWRDEKRPFTFTSLPE--DDVLEFVIKSYP--------DHDGVTEQLGRLQPGDT------LLIE 90 (218)
T ss_pred CCCCCCEEEEEeeCCCCCccccccccccCCC--CCeEEEEEEEcC--------CCCcHhHHHHhCCCCCE------EEEE
Confidence 45689998654442 3579999999986 378999887541 13667999998777653 6788
Q ss_pred EecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEE
Q 010480 346 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 425 (509)
Q Consensus 346 ~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~ 425 (509)
.|.|.|.++ .|+||||+|||||||+||++++.... ...+++|+||+|+.+ |++|.+||++|.. ++++
T Consensus 91 gP~G~~~~~----~~~vlia~GtGiaP~~s~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~----~~~~ 157 (218)
T cd06196 91 DPWGAIEYK----GPGVFIAGGAGITPFIAILRDLAAKG----KLEGNTLIFANKTEK-DIILKDELEKMLG----LKFI 157 (218)
T ss_pred CCccceEec----CceEEEecCCCcChHHHHHHHHHhCC----CCceEEEEEecCCHH-HHhhHHHHHHhhc----ceEE
Confidence 888988753 57999999999999999999987632 125799999999997 9999999999853 3567
Q ss_pred EEEecCCCCcccchhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 426 VAFSREGPTKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 426 ~a~Sr~~~~~~yvq~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
.++|++.. .+|.++++.+ +.+.+.+ ..++.||+||| +.|++++.+.|.+.+
T Consensus 158 ~~~s~~~~-~~~~~g~~~~--~~l~~~~~~~~~~vyiCGp-~~m~~~~~~~l~~~G 209 (218)
T cd06196 158 NVVTDEKD-PGYAHGRIDK--AFLKQHVTDFNQHFYVCGP-PPMEEAINGALKELG 209 (218)
T ss_pred EEEcCCCC-CCeeeeEECH--HHHHHhcCCCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 77887643 2344444432 1222333 23578999999 899999999987754
No 52
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.90 E-value=6e-24 Score=203.42 Aligned_cols=179 Identities=21% Similarity=0.282 Sum_probs=133.3
Q ss_pred CCChhhhHHhhcCC---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhh-hcCCCccCCCCceeeEE
Q 010480 270 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIF 345 (509)
Q Consensus 270 ~~~~~~~l~~~~p~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~-~~~~~~~~~~~~~v~v~ 345 (509)
...+||++.+-++. ...|+|||+|.|.. .+.++|+|+.+ |.+|.+|. ++.+|+ .+.|.
T Consensus 22 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~~-----------G~~t~~l~~~l~~G~------~v~i~ 83 (216)
T cd06198 22 GHRAGQFAFLRFDASGWEEPHPFTISSAPDP-DGRLRFTIKAL-----------GDYTRRLAERLKPGT------RVTVE 83 (216)
T ss_pred CcCCCCEEEEEeCCCCCCCCCCcEEecCCCC-CCeEEEEEEeC-----------ChHHHHHHHhCCCCC------EEEEE
Confidence 34589998765553 56899999999863 46899988643 77999999 555543 36788
Q ss_pred EecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEE
Q 010480 346 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 425 (509)
Q Consensus 346 ~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~ 425 (509)
.|.|.|.++.. .++++|||+||||||+++|++++..... .++++|+||+|+.+ |++|.++|+++...+ .++++
T Consensus 84 gP~G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~-~~~~~ 156 (216)
T cd06198 84 GPYGRFTFDDR-RARQIWIAGGIGITPFLALLEALAARGD----ARPVTLFYCVRDPE-DAVFLDELRALAAAA-GVVLH 156 (216)
T ss_pred CCCCCCccccc-CceEEEEccccCHHHHHHHHHHHHhcCC----CceEEEEEEECCHH-HhhhHHHHHHHHHhc-CeEEE
Confidence 88899998765 6899999999999999999999876421 36899999999998 999999999998876 55676
Q ss_pred EEEecCCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 426 VAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 426 ~a~Sr~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
++.++... .......+.. ... ...+..+|+||| ++|++++++.|.+.+
T Consensus 157 ~~~~~~~~-~~~~~~~~~~----~~~-~~~~~~vyicGp-~~m~~~v~~~l~~~G 204 (216)
T cd06198 157 VIDSPSDG-RLTLEQLVRA----LVP-DLADADVWFCGP-PGMADALEKGLRALG 204 (216)
T ss_pred EEeCCCCc-ccchhhhhhh----cCC-CcCCCeEEEECc-HHHHHHHHHHHHHcC
Confidence 66554322 1111111100 000 124679999999 899999999998754
No 53
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.90 E-value=6.9e-24 Score=205.55 Aligned_cols=185 Identities=21% Similarity=0.336 Sum_probs=137.8
Q ss_pred CChhhhHHhhcC--CC--CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEE
Q 010480 271 PPLGVFFAAIVP--RL--QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 346 (509)
Q Consensus 271 ~~~~~~l~~~~p--~~--~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~ 346 (509)
..+|||+.+.+| .. ..|+|||+|.|.. .+.++|+|+.+ ..|.+|.||++....|+ .+.|..
T Consensus 31 ~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~~l~l~v~~~---------~~G~~s~~l~~~l~~Gd-----~v~i~g 95 (235)
T cd06217 31 FLAGQHVDLRLTAIDGYTAQRSYSIASSPTQ-RGRVELTVKRV---------PGGEVSPYLHDEVKVGD-----LLEVRG 95 (235)
T ss_pred cCCcCeEEEEEecCCCceeeeeecccCCCCC-CCeEEEEEEEc---------CCCcchHHHHhcCCCCC-----EEEEeC
Confidence 457999976554 22 2499999999864 46899988754 34889999987433333 367888
Q ss_pred ecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEE
Q 010480 347 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 426 (509)
Q Consensus 347 ~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~ 426 (509)
|.|.|.++....++++|||+||||||+++++++..... ...+++|+||+|+.+ |.+|.+||.+++++...++++.
T Consensus 96 P~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~----~~~~i~l~~~~r~~~-~~~~~~el~~~~~~~~~~~~~~ 170 (235)
T cd06217 96 PIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLG----WPVPFRLLYSARTAE-DVIFRDELEQLARRHPNLHVTE 170 (235)
T ss_pred CceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcC----CCceEEEEEecCCHH-HhhHHHHHHHHHHHCCCeEEEE
Confidence 88999876544678999999999999999999987642 136899999999998 8999999999998766667888
Q ss_pred EEecCCC-----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 427 AFSREGP-----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 427 a~Sr~~~-----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
++||+.. .++++...+.+. +.. ...+..+|+||| ++|++++.+.|.+.+
T Consensus 171 ~~s~~~~~~~~~~~g~~~~~~l~~---~~~-~~~~~~v~icGp-~~m~~~v~~~l~~~G 224 (235)
T cd06217 171 ALTRAAPADWLGPAGRITADLIAE---LVP-PLAGRRVYVCGP-PAFVEAATRLLLELG 224 (235)
T ss_pred EeCCCCCCCcCCcCcEeCHHHHHh---hCC-CccCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 8888621 234444332211 100 024689999999 899999999998754
No 54
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.90 E-value=7.8e-24 Score=208.45 Aligned_cols=178 Identities=19% Similarity=0.244 Sum_probs=133.0
Q ss_pred CChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecCC
Q 010480 271 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 350 (509)
Q Consensus 271 ~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g~ 350 (509)
.-+|||+.+-+|...+|+|||++.+ .+.++|+|+.+ |.+|+||+++.+|+. +.|..|.|.
T Consensus 33 ~~pGQfi~l~~~~~~~~pySi~~~~---~~~~~~~Ik~~-----------G~~S~~L~~l~~Gd~------v~v~gP~G~ 92 (263)
T PRK08221 33 VKPGQFFEVSLPKVGEAPISVSDYG---DGYIDLTIRRV-----------GKVTDEIFNLKEGDK------LFLRGPYGN 92 (263)
T ss_pred CCCCceEEEEeCCCCcceeeccCCC---CCEEEEEEEeC-----------CchhhHHHhCCCCCE------EEEECCCCC
Confidence 4589998766676667999999975 36899888632 899999998766543 667777776
Q ss_pred -CCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEe
Q 010480 351 -FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 429 (509)
Q Consensus 351 -F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~S 429 (509)
|.++....+|+||||+|||||||+||+++..... ...++++||||+|+.+ |++|++||++|++.. .++++++
T Consensus 93 ~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~---~~~~~v~L~~g~r~~~-~l~~~~el~~~~~~~---~~~~~~~ 165 (263)
T PRK08221 93 GFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENP---QEIKSLDLILGFKNPD-DILFKEDLKRWREKI---NLILTLD 165 (263)
T ss_pred CcccCccCCccEEEEcccccHHHHHHHHHHHHhCc---ccCceEEEEEecCCHH-HhhHHHHHHHHhhcC---cEEEEec
Confidence 8877555689999999999999999999986532 1235899999999998 999999999998753 3455566
Q ss_pred cCCC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 430 REGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 430 r~~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+... ..+++++.+.+.. ... ..+.++|+||| +.|++++.+.|.+.+
T Consensus 166 ~~~~~~~~~~G~v~~~l~~~~---~~~-~~~~~vylCGp-~~mv~~~~~~L~~~G 215 (263)
T PRK08221 166 EGEEGYRGNVGLVTKYIPELT---LKD-IDNMQVIVVGP-PIMMKFTVLEFLKRG 215 (263)
T ss_pred CCCCCCccCccccChhhHhcc---CCC-cCCeEEEEECC-HHHHHHHHHHHHHcC
Confidence 5322 3456654433210 000 14678999999 999999999997654
No 55
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.90 E-value=1.8e-23 Score=203.51 Aligned_cols=186 Identities=23% Similarity=0.340 Sum_probs=136.4
Q ss_pred CCChhhhHHhhcCC---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhh-hcCCCccCCCCceeeEE
Q 010480 270 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIF 345 (509)
Q Consensus 270 ~~~~~~~l~~~~p~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~-~~~~~~~~~~~~~v~v~ 345 (509)
...+||++.+.+|. ..+|+|||+|.|.. +.++|+|+.+ ..|.+|.||+ ++.+|+ .+.|.
T Consensus 32 ~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~--~~l~~~i~~~---------~~G~~s~~l~~~~~~G~------~v~i~ 94 (241)
T cd06214 32 RYRPGQFLTLRVPIDGEEVRRSYSICSSPGD--DELRITVKRV---------PGGRFSNWANDELKAGD------TLEVM 94 (241)
T ss_pred CcCCCCeEEEEeecCCCeeeeeeeecCCCCC--CcEEEEEEEc---------CCCccchhHHhccCCCC------EEEEe
Confidence 45689999765442 36799999998863 4788888654 3589999998 455543 36788
Q ss_pred EecCCCCCCCC-CCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCC-cCe
Q 010480 346 VRQSNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQ 423 (509)
Q Consensus 346 ~~~g~F~lp~~-~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~-~~~ 423 (509)
.|.|.|.++.+ ..+++||||+|||||||+++++++.... ..++++|+|++|+.+ |++|.+||+++.+... .++
T Consensus 95 gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~ 169 (241)
T cd06214 95 PPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALARE----PASRVTLVYGNRTEA-SVIFREELADLKARYPDRLT 169 (241)
T ss_pred CCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcC----CCCcEEEEEEeCCHH-HhhHHHHHHHHHHhCcCceE
Confidence 88899988765 5789999999999999999999987542 136899999999998 9999999999987653 556
Q ss_pred EEEEEecCCCCc----ccchhhHhhcHHHHHHHH--hCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 424 LIVAFSREGPTK----EYVQHKMMEKSSDIWNML--SEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 424 ~~~a~Sr~~~~~----~yvq~~i~~~~~~v~~~l--~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+..++|+++... +.+...+... .+.+.. ..+..||+||| +.|++++.+.|.+.+
T Consensus 170 ~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~v~icGp-~~mv~~v~~~l~~~G 229 (241)
T cd06214 170 VIHVLSREQGDPDLLRGRLDAAKLNA--LLKNLLDATEFDEAFLCGP-EPMMDAVEAALLELG 229 (241)
T ss_pred EEEEecCCCCCcccccCccCHHHHHH--hhhhhcccccCcEEEEECC-HHHHHHHHHHHHHcC
Confidence 777788754322 2332221111 111111 24589999999 899999999987753
No 56
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.90 E-value=2.4e-23 Score=203.10 Aligned_cols=174 Identities=20% Similarity=0.281 Sum_probs=132.3
Q ss_pred CCChhhhHHhhcCC----CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEE
Q 010480 270 KPPLGVFFAAIVPR----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF 345 (509)
Q Consensus 270 ~~~~~~~l~~~~p~----~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~ 345 (509)
...+||++.+.+|. ...|+|||+|.|.. .+.++|+|+.+ |.+|+||.++.+|+ .+.|.
T Consensus 24 ~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~~l~l~v~~~-----------G~~s~~l~~l~~Gd------~v~i~ 85 (246)
T cd06218 24 AAKPGQFVMLRVPDGSDPLLRRPISIHDVDPE-EGTITLLYKVV-----------GKGTRLLSELKAGD------ELDVL 85 (246)
T ss_pred cCCCCcEEEEEeCCCCCCcCCCceEeeeccCC-CCEEEEEEEEE-----------CcchHHHhcCCCCC------EEEEE
Confidence 34579998766553 35799999998853 47899888653 77899999877654 36788
Q ss_pred EecCC-CCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeE
Q 010480 346 VRQSN-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQL 424 (509)
Q Consensus 346 ~~~g~-F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~ 424 (509)
.|.|. |.++. ..+++||||+|||||||+||++++... .++++|||++|+.+ |.+|++||++|.. ++
T Consensus 86 gP~G~~~~~~~-~~~~~vlIagGtGIaP~~s~l~~~~~~------~~~v~l~~~~r~~~-d~~~~~eL~~l~~-----~~ 152 (246)
T cd06218 86 GPLGNGFDLPD-DDGKVLLVGGGIGIAPLLFLAKQLAER------GIKVTVLLGFRSAD-DLFLVEEFEALGA-----EV 152 (246)
T ss_pred ecCCCCcCCCC-CCCcEEEEecccCHHHHHHHHHHHHhc------CCceEEEEEccchh-hhhhHHHHHhhCC-----cE
Confidence 88775 77764 468999999999999999999998652 16899999999998 9999999999843 22
Q ss_pred EEEEecCC--CCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHH
Q 010480 425 IVAFSREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQ 481 (509)
Q Consensus 425 ~~a~Sr~~--~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 481 (509)
.. ++++. +.++|+++.+.+... + ..+..||+||| +.|++++++.|.+.+.
T Consensus 153 ~~-~~~~~~~~~~g~v~~~l~~~~~---~--~~~~~vyiCGp-~~mv~~~~~~L~~~Gv 204 (246)
T cd06218 153 YV-ATDDGSAGTKGFVTDLLKELLA---E--ARPDVVYACGP-EPMLKAVAELAAERGV 204 (246)
T ss_pred EE-EcCCCCCCcceehHHHHHHHhh---c--cCCCEEEEECC-HHHHHHHHHHHHhcCC
Confidence 22 23322 346788886655321 1 14689999999 8999999999987653
No 57
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.90 E-value=2.4e-23 Score=201.47 Aligned_cols=187 Identities=19% Similarity=0.263 Sum_probs=139.4
Q ss_pred CCChhhhHHhhcCC---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEE
Q 010480 270 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 346 (509)
Q Consensus 270 ~~~~~~~l~~~~p~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~ 346 (509)
...+||++.+.+|. ...|+|||+|.+.. .+.++|+|+.+ ..|.+|.||+++.+|+ .+.|..
T Consensus 28 ~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~-~~~~~~~v~~~---------~~G~~s~~l~~~~~G~------~v~i~g 91 (234)
T cd06183 28 GLPVGQHVELKAPDDGEQVVRPYTPISPDDD-KGYFDLLIKIY---------PGGKMSQYLHSLKPGD------TVEIRG 91 (234)
T ss_pred CCCcccEEEEEecCCCcccccccccccCCCc-CCEEEEEEEEC---------CCCcchhHHhcCCCCC------EEEEEC
Confidence 45689998765554 46799999999863 46788888753 2589999999876654 367888
Q ss_pred ecCCCCCCCCCC-CCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcC-CcCeE
Q 010480 347 RQSNFKLPADAK-VPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALSQL 424 (509)
Q Consensus 347 ~~g~F~lp~~~~-~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~-~~~~~ 424 (509)
|.|.|.+..+.. .++||||+||||||+++++++..... ....+++|+|++|+.+ |.+|.+||+++.+.. ..+++
T Consensus 92 P~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~---~~~~~i~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~~~ 167 (234)
T cd06183 92 PFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDP---EDKTKISLLYANRTEE-DILLREELDELAKKHPDRFKV 167 (234)
T ss_pred CccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCc---CcCcEEEEEEecCCHH-HhhhHHHHHHHHHhCcccEEE
Confidence 889998875554 79999999999999999999987532 1136899999999998 899999999998762 44567
Q ss_pred EEEEecCCC----CcccchhhHhhcHHHHHHH-HhCCCEEEEecCCcchHH-HHHHHHHHHH
Q 010480 425 IVAFSREGP----TKEYVQHKMMEKSSDIWNM-LSEGAYLYVCGDAKSMAR-DVHRTLHTIV 480 (509)
Q Consensus 425 ~~a~Sr~~~----~~~yvq~~i~~~~~~v~~~-l~~~~~iyvCGp~~~M~~-~v~~~L~~i~ 480 (509)
+.++|+.+. ..+++++.+... .... ...+..+|+||| +.|++ ++++.|.+.+
T Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~l~~---~~~~~~~~~~~~~icGp-~~~~~~~~~~~l~~~G 225 (234)
T cd06183 168 HYVLSRPPEGWKGGVGFITKEMIKE---HLPPPPSEDTLVLVCGP-PPMIEGAVKGLLKELG 225 (234)
T ss_pred EEEEcCCCcCCccccceECHHHHHH---hCCCCCCCCeEEEEECC-HHHHHHHHHHHHHHcC
Confidence 777776432 245665443221 0000 114578999999 89999 9999987643
No 58
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.89 E-value=3e-23 Score=204.00 Aligned_cols=178 Identities=17% Similarity=0.204 Sum_probs=132.3
Q ss_pred CChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecCC
Q 010480 271 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 350 (509)
Q Consensus 271 ~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g~ 350 (509)
.-+|||+.+.+|...+|+|||+|.+ ++.++|+|+.+ |.+|++|+++.+|+ .+.|..|.|.
T Consensus 31 ~~pGQ~v~l~~~~~~~~pySi~~~~---~~~l~~~Vk~~-----------G~~S~~L~~l~~Gd------~v~i~gP~G~ 90 (261)
T TIGR02911 31 VKPGQFFEVSLPKYGEAPISVSGIG---EGYIDLTIRRV-----------GKVTDEVFTLKEGD------NLFLRGPYGN 90 (261)
T ss_pred CCCCcEEEEEecCCCccceecCCCC---CCeEEEEEEeC-----------chhhHHHHcCCCCC------EEEEecCCCC
Confidence 4589999766677778999999853 47899888642 89999999876654 3678888777
Q ss_pred -CCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEe
Q 010480 351 -FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 429 (509)
Q Consensus 351 -F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~S 429 (509)
|.++....+|++|||+||||||++||+++++... ...++++|+||+|+.+ |++|++||++|++.. .+..+++
T Consensus 91 ~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~---~~~~~v~L~~~~r~~~-~~~~~~eL~~l~~~~---~~~~~~~ 163 (261)
T TIGR02911 91 GFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNP---KEIKSLNLILGFKTPD-DILFKEDIAEWKGNI---NLTLTLD 163 (261)
T ss_pred CcccCccCCceEEEEecccCcHHHHHHHHHHHhCc---ccCceEEEEEecCCHH-HhhHHHHHHHHHhcC---cEEEEEc
Confidence 8777555689999999999999999999976532 1236799999999998 999999999998753 2344455
Q ss_pred cCCC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 430 REGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 430 r~~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+... ..+++++.+.+.. +.+ ..+.++|+||| +.|++++++.|.+.+
T Consensus 164 ~~~~~~~~~~g~v~~~l~~~~--~~~--~~~~~v~lCGp-~~mv~~~~~~L~~~G 213 (261)
T TIGR02911 164 EAEEDYKGNIGLVTKYIPELT--LKD--IEEVQAIVVGP-PIMMKFTVQELLKKG 213 (261)
T ss_pred CCCCCCcCCeeccCHhHHhcc--CCC--ccceEEEEECC-HHHHHHHHHHHHHcC
Confidence 4321 3456655443210 001 13578999999 999999999987754
No 59
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.89 E-value=4.2e-23 Score=206.81 Aligned_cols=194 Identities=15% Similarity=0.219 Sum_probs=134.6
Q ss_pred CChhhhHHhhcCC-------CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceee
Q 010480 271 PPLGVFFAAIVPR-------LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAP 343 (509)
Q Consensus 271 ~~~~~~l~~~~p~-------~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~ 343 (509)
..+|||+.+-++. ...|+||++|+|. ..+.++|+|+.+..........+|.+|+||+++.+|+. +.
T Consensus 64 ~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~-~~~~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~Gd~------v~ 136 (300)
T PTZ00319 64 LPIGQHIVFRCDCTTPGKPETVQHSYTPISSDD-EKGYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLGDK------IE 136 (300)
T ss_pred CccceEEEEEEEeCCCCccceEEeeeccCCCcc-cCCEEEEEEEEeccCCCCCCCCCCChhhhhhcCCCCCE------EE
Confidence 4589998654442 2469999999986 35789999986521110001235999999987766543 67
Q ss_pred EEEecCCCCCCCC---------------CCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCcccc
Q 010480 344 IFVRQSNFKLPAD---------------AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIY 408 (509)
Q Consensus 344 v~~~~g~F~lp~~---------------~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly 408 (509)
|..|.|.|.+..+ ..+|++|||+|||||||++|+++..... .+..+++|+||+|+.+ |++|
T Consensus 137 i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~sml~~l~~~~---~~~~~i~liyg~r~~~-dl~~ 212 (300)
T PTZ00319 137 MRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPMLQIIHAIKKNK---EDRTKVFLVYANQTED-DILL 212 (300)
T ss_pred EEccceeeEecCCcceeeccccccccccccceEEEEecCcccCHHHHHHHHHHhCC---CCCceEEEEEecCCHH-HhhH
Confidence 8888888865421 1258999999999999999999987532 1225799999999998 9999
Q ss_pred HHHHHHHHHcCCcCeEEEEEecCCC-----CcccchhhHhhcHHHHHHHHh------CCCEEEEecCCcchHH-HHHHHH
Q 010480 409 EDELNNFVQSGALSQLIVAFSREGP-----TKEYVQHKMMEKSSDIWNMLS------EGAYLYVCGDAKSMAR-DVHRTL 476 (509)
Q Consensus 409 ~~el~~~~~~~~~~~~~~a~Sr~~~-----~~~yvq~~i~~~~~~v~~~l~------~~~~iyvCGp~~~M~~-~v~~~L 476 (509)
.+||+++++ ...++++.+.+++.. ..++|+..+.+.. + .... .+..||+||| ++|++ ++.+.|
T Consensus 213 ~~eL~~~~~-~~~~~~~~~~~~~~~~~~~~~~G~v~~~~l~~~--~-~~~~~~~~~~~~~~vyiCGp-~~mv~~~~~~~L 287 (300)
T PTZ00319 213 RKELDEAAK-DPRFHVWYTLDREATPEWKYGTGYVDEEMLRAH--L-PVPDPQNSGIKKVMALMCGP-PPMLQMAVKPNL 287 (300)
T ss_pred HHHHHHHhh-CCCEEEEEEECCCCCCCcccccceeCHHHHHhh--c-CCccccccccCCeEEEEECC-HHHHHHHHHHHH
Confidence 999999654 444578888887422 3466765443211 0 0001 3478999999 89998 567777
Q ss_pred HHHH
Q 010480 477 HTIV 480 (509)
Q Consensus 477 ~~i~ 480 (509)
.+.+
T Consensus 288 ~~~G 291 (300)
T PTZ00319 288 EKIG 291 (300)
T ss_pred HHcC
Confidence 6654
No 60
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.89 E-value=1.1e-22 Score=193.92 Aligned_cols=176 Identities=20% Similarity=0.261 Sum_probs=130.6
Q ss_pred CCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecC
Q 010480 270 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 349 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g 349 (509)
...+|||+.+.+|....|+|||+|.|.. .+.++|+|+.+. ..+.+|.||++..+.|+ .+.|..|.|
T Consensus 25 ~~~pGQ~~~l~~~~~~~r~ySi~s~~~~-~~~l~~~v~~~~--------~g~~~s~~l~~~~~~Gd-----~v~i~gP~g 90 (211)
T cd06185 25 AFEPGAHIDVHLPNGLVRQYSLCGDPAD-RDRYRIAVLREP--------ASRGGSRYMHELLRVGD-----ELEVSAPRN 90 (211)
T ss_pred CCCCCceEEEEcCCCCceeeeccCCCCC-CCEEEEEEEecc--------CCCchHHHHHhcCCCCC-----EEEEcCCcc
Confidence 4568999976656667899999999863 478999887541 11347999987544333 367888889
Q ss_pred CCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEe
Q 010480 350 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 429 (509)
Q Consensus 350 ~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~S 429 (509)
.|.++++ .+++||||+||||||+++++++.... ..+++|+||+|+.+ |.+|.++|+++. .. .+.+.++
T Consensus 91 ~f~~~~~-~~~~v~ia~GtGiap~~~il~~~~~~------~~~v~l~~~~r~~~-~~~~~~~l~~~~--~~--~~~~~~~ 158 (211)
T cd06185 91 LFPLDEA-ARRHLLIAGGIGITPILSMARALAAR------GADFELHYAGRSRE-DAAFLDELAALP--GD--RVHLHFD 158 (211)
T ss_pred CCcCCCC-CCcEEEEeccchHhHHHHHHHHHHhC------CCCEEEEEEeCCCc-chhHHHHHhhhc--CC--cEEEEEC
Confidence 9988653 57999999999999999999997642 15799999999997 899999999987 22 3445555
Q ss_pred cCCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHH
Q 010480 430 REGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQ 481 (509)
Q Consensus 430 r~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 481 (509)
+.. ...++.+.+.. ...+..+|+||| +.|++++.+.|.+.+.
T Consensus 159 ~~~-~~~~~~~~~~~--------~~~~~~vyicGp-~~m~~~~~~~l~~~gv 200 (211)
T cd06185 159 DEG-GRLDLAALLAA--------PPAGTHVYVCGP-EGMMDAVRAAAAALGW 200 (211)
T ss_pred CCC-CccCHHHHhcc--------CCCCCEEEEECC-HHHHHHHHHHHHHcCC
Confidence 532 22333333321 124689999999 8999999999977543
No 61
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.89 E-value=6e-23 Score=192.97 Aligned_cols=186 Identities=19% Similarity=0.336 Sum_probs=149.2
Q ss_pred CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecCCCCCCCCCCCCEEEE
Q 010480 285 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 364 (509)
Q Consensus 285 ~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g~F~lp~~~~~pii~I 364 (509)
.-|+||+||-|.+ .+.|.|-|++..-+-.....+.|.||+|+.++++|+. +.|++|.|.|... +.++++|||
T Consensus 210 ~~rAYSmAsYPeE-~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpGDK------vtisGPfGEfFaK-dtdaemvFi 281 (410)
T COG2871 210 IIRAYSMASYPEE-KGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPGDK------VTISGPFGEFFAK-DTDAEMVFI 281 (410)
T ss_pred HHHHhhhhcChhh-cCeEEEEEEeccCCCCCCCCCccceeeeEEeecCCCe------EEEeccchhhhhc-cCCCceEEE
Confidence 4599999999986 4788888877533322335778999999999999764 7899999988776 457899999
Q ss_pred ccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEecCCCC------cccc
Q 010480 365 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT------KEYV 438 (509)
Q Consensus 365 a~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~~------~~yv 438 (509)
+||.|.||+||-|-+.+.+.++ .+++.+.||+|+.. +.+|.+++++++++.++|++|+++|.+.++ .+++
T Consensus 282 gGGAGmapmRSHIfDqL~rlhS---kRkis~WYGARS~r-E~fY~Ed~d~L~ae~pNF~wH~aLSdplpEDnW~g~TgFi 357 (410)
T COG2871 282 GGGAGMAPMRSHIFDQLKRLHS---KRKISFWYGARSLR-EMFYQEDFDQLQAENPNFHWHLALSDPLPEDNWDGYTGFI 357 (410)
T ss_pred ecCcCcCchHHHHHHHHHhhcc---cceeeeeeccchHH-HhHHHHHHHHHHhhCCCcEEEEEecCCCCcCCcccchhHH
Confidence 9999999999999988876544 38899999999998 899999999999999999999999986442 3445
Q ss_pred hhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCC
Q 010480 439 QHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGS 485 (509)
Q Consensus 439 q~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~ 485 (509)
...+.+. .+.++- .++..+|+||| +-|-.+|.+.|.+++.+..+
T Consensus 358 hnv~~en--~Lk~h~aPEDceyYmCGP-p~mNasvikmL~dlGVE~en 402 (410)
T COG2871 358 HNVLYEN--YLKDHEAPEDCEYYMCGP-PLMNASVIKMLKDLGVEREN 402 (410)
T ss_pred HHHHHhh--hhhcCCCchheeEEeeCc-chhhHHHHHHHHhcCccccc
Confidence 4444443 222221 35789999999 89999999999999887654
No 62
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.88 E-value=1.1e-22 Score=194.97 Aligned_cols=162 Identities=17% Similarity=0.248 Sum_probs=118.3
Q ss_pred CChhhhHHhhcCC-------------------CCCccccccCCCCCC--CCeEEEEEEEEEeeCCCCccccCcCchhhhh
Q 010480 271 PPLGVFFAAIVPR-------------------LQPRYYSISSSPRVA--PSRIHVTCALVYEKTPTGRVHKGLCSTWMKN 329 (509)
Q Consensus 271 ~~~~~~l~~~~p~-------------------~~pR~YSIaSsp~~~--~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~ 329 (509)
..+||++.+-+|. ...|+|||||+|..+ .+.++|+|+.+ |.+|+||++
T Consensus 26 ~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~vk~~-----------G~~T~~L~~ 94 (220)
T cd06197 26 WTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEITVRKK-----------GPVTGFLFQ 94 (220)
T ss_pred cCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEEEEeC-----------CCCCHHHHH
Confidence 4578887655553 134999999999743 26888887642 899999998
Q ss_pred cCCCccCCCCceeeEEEecCCCCCCC---CCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCcc
Q 010480 330 SLPMEKSNDCSWAPIFVRQSNFKLPA---DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDY 406 (509)
Q Consensus 330 ~~~~~~~~~~~~v~v~~~~g~F~lp~---~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ 406 (509)
...... ..+..+.+..|.|.|.++. +..+++||||||||||||++|+++++... ....+++|+||+|+.+ |+
T Consensus 95 ~~~~~~-~~G~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil~~l~~~~---~~~~~v~l~~~~r~~~-~~ 169 (220)
T cd06197 95 VARRLR-EQGLEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILSSR---NTTWDITLLWSLREDD-LP 169 (220)
T ss_pred hhhccc-CCCceEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHHHHHHhcc---cCCCcEEEEEEecchh-hH
Confidence 754210 0123478888899999875 34578999999999999999999987532 1236899999999998 99
Q ss_pred ccHHHHHHHHHcCCcCeEEEEEecCCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHH
Q 010480 407 IYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 478 (509)
Q Consensus 407 ly~~el~~~~~~~~~~~~~~a~Sr~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~ 478 (509)
+|.+||+++... ...+.. ++ ...||+||| ++|+++|.+.+.+
T Consensus 170 ~~~~el~~~~~~--~~~~~~-~~--------------------------~~~v~~CGP-~~m~~~~~~~~~~ 211 (220)
T cd06197 170 LVMDTLVRFPGL--PVSTTL-FI--------------------------TSEVYLCGP-PALEKAVLEWLEG 211 (220)
T ss_pred HHHHHHHhccCC--ceEEEE-EE--------------------------eccEEEECc-HHHHHHHHHHhhh
Confidence 999999876531 111111 11 117999999 8999999988775
No 63
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.88 E-value=5.1e-22 Score=193.94 Aligned_cols=180 Identities=22% Similarity=0.288 Sum_probs=143.7
Q ss_pred CCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecC
Q 010480 270 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 349 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g 349 (509)
...+|||+.+.+|....|+|||||.+.. .+.++|.+++. ..|.+|.+++.+.+++. +.+.+|.|
T Consensus 35 ~~~pGQfv~l~~~~~~~~P~si~~~~~~-~g~~~l~i~~~---------~~G~~T~~i~~~k~gd~------i~v~GP~G 98 (252)
T COG0543 35 TFKPGQFVMLRVPGGVRRPYSLASAPDD-KGELELHIRVY---------EVGKVTKYIFGLKEGDK------IRVRGPLG 98 (252)
T ss_pred ccCCCcEEEEEeCCCcEEEeeeccCCCc-CCcEEEEEEEE---------eCChHHHHHhhccCCCE------EEEEcCCC
Confidence 4679999988888899999999999974 57777777654 35999999999977654 67888888
Q ss_pred CCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEe
Q 010480 350 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 429 (509)
Q Consensus 350 ~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~S 429 (509)
++.+.++..+|+++||||||+||+++++++....+ ...+++++||.|+++ |+++.+||+++..+ +++.+.+
T Consensus 99 ~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~----~~~~V~~~~G~~~~~-dl~~~~el~~~~~~----~~~~~~~ 169 (252)
T COG0543 99 NGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKG----DANKVTLLYGARTAK-DLLLLDELEELAEK----EVHPVTD 169 (252)
T ss_pred CCccccccCCcEEEEecccCHhHHHHHHHHHHhcC----CCceEEEEEeccChh-hcccHHHHHHhhcC----cEEEEEC
Confidence 87776666788999999999999999999987632 347899999999998 99999999999875 3555554
Q ss_pred -cCCCCcccc-hhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHH
Q 010480 430 -REGPTKEYV-QHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQ 481 (509)
Q Consensus 430 -r~~~~~~yv-q~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 481 (509)
.+.+.+++| ++.+.+... .+...+|+||| +.|++++.+.+.+...
T Consensus 170 ~~~~G~~G~v~~~~~~~~~~------~~~~~v~~cGp-~~M~~~v~~~~~~~g~ 216 (252)
T COG0543 170 DGWKGRKGFVTTDVLKELLD------LEVDDVYICGP-PAMVKAVREKLKEYGV 216 (252)
T ss_pred CCCCccCcceeHHHHhhhcc------ccCCEEEEECC-HHHHHHHHHHHHhcCC
Confidence 233467888 666654311 14689999999 9999999999888653
No 64
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.87 E-value=3.7e-22 Score=195.32 Aligned_cols=168 Identities=23% Similarity=0.301 Sum_probs=128.6
Q ss_pred CCChhhhHHhhcCCC---CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEE
Q 010480 270 KPPLGVFFAAIVPRL---QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 346 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~---~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~ 346 (509)
...+|||+.+.+|.. .+|+|||+|+| .+.++|+|+.+ |.+|+||+++.+|+ .+.|..
T Consensus 31 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~---~~~l~l~Vk~~-----------G~~t~~l~~l~~G~------~v~i~g 90 (250)
T PRK00054 31 DMKPGQFVMVWVPGVEPLLERPISISDID---KNEITILYRKV-----------GEGTKKLSKLKEGD------ELDIRG 90 (250)
T ss_pred CCCCCcEEEEEeCCCCCcCceeeEEeeeC---CCEEEEEEEEc-----------ChHHHHHhcCCCCC------EEEEEc
Confidence 356899987655544 58999999998 37899888643 88999999876654 367888
Q ss_pred ecCC-CCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEE
Q 010480 347 RQSN-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 425 (509)
Q Consensus 347 ~~g~-F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~ 425 (509)
|.|. |.++. ..+|+||||+||||||+++++++..... .+++|+|++|+.+ |++|.+||+++.+ ++
T Consensus 91 P~G~~f~l~~-~~~~~vlIagG~GiaP~~s~l~~~~~~~------~~v~l~~~~r~~~-d~~~~~el~~~~~------~~ 156 (250)
T PRK00054 91 PLGNGFDLEE-IGGKVLLVGGGIGVAPLYELAKELKKKG------VEVTTVLGARTKD-EVIFEEEFAKVGD------VY 156 (250)
T ss_pred ccCCCCCCCC-CCCeEEEEeccccHHHHHHHHHHHHHcC------CcEEEEEEcCCHH-HhhhHHHHHhcCC------EE
Confidence 8775 88764 4679999999999999999999987421 5799999999998 9999999998431 22
Q ss_pred EEEecCC--CCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 426 VAFSREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 426 ~a~Sr~~--~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+. +++. +.++|+++.+.+.. .....||+||| +.|++++.+.|.+.+
T Consensus 157 ~~-~~~~~~~~~g~v~~~l~~~~-------~~~~~vyvCGp-~~m~~~v~~~l~~~G 204 (250)
T PRK00054 157 VT-TDDGSYGFKGFVTDVLDELD-------SEYDAIYSCGP-EIMMKKVVEILKEKK 204 (250)
T ss_pred EE-ecCCCCCcccchhHhHhhhc-------cCCCEEEEeCC-HHHHHHHHHHHHHcC
Confidence 22 2322 34578887665431 23568999999 999999999998854
No 65
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.87 E-value=7.2e-22 Score=191.24 Aligned_cols=167 Identities=22% Similarity=0.272 Sum_probs=125.5
Q ss_pred CCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecC
Q 010480 270 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 349 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g 349 (509)
..-+|||+.+.+|....|+|||+|+| +.++|+|+. .|.+|+||+++.+|+ .+.+..|.|
T Consensus 23 ~~~pGQ~v~l~~~~~~~~~~Si~s~~----~~l~~~v~~-----------~G~~s~~L~~l~~Gd------~v~i~gP~G 81 (233)
T cd06220 23 DFKPGQFVMVWVPGVDEIPMSLSYID----GPNSITVKK-----------VGEATSALHDLKEGD------KLGIRGPYG 81 (233)
T ss_pred CCCCCceEEEEeCCCCcceeEEecCC----CeEEEEEEe-----------cChHHHHHHhcCCCC------EEEEECcCC
Confidence 45589999765566667999999997 578888753 288999999866554 367778878
Q ss_pred C-CCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEE
Q 010480 350 N-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 428 (509)
Q Consensus 350 ~-F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~ 428 (509)
. |.++ .+|+||||+|||||||++++++.... ++++|+||+|+.+ |++|++||+++ . ++.++.
T Consensus 82 ~~f~~~---~~~~vliAgGtGitP~~sil~~~~~~-------~~i~l~~~~r~~~-d~~~~~eL~~~----~--~~~~~~ 144 (233)
T cd06220 82 NGFELV---GGKVLLIGGGIGIAPLAPLAERLKKA-------ADVTVLLGARTKE-ELLFLDRLRKS----D--ELIVTT 144 (233)
T ss_pred CCccCC---CCeEEEEecCcChHHHHHHHHHHHhc-------CCEEEEEecCChH-HChhHHHHhhC----C--cEEEEE
Confidence 7 8775 57999999999999999999987642 5799999999998 99999999972 1 222222
Q ss_pred ec-CCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHH
Q 010480 429 SR-EGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQ 481 (509)
Q Consensus 429 Sr-~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 481 (509)
+. +....+++++.+.+.. ......||+||| ++|++++.+.|.+.+.
T Consensus 145 ~~~~~~~~g~~~~~l~~~~------~~~~~~vyicGp-~~m~~~~~~~L~~~g~ 191 (233)
T cd06220 145 DDGSYGFKGFVTDLLKELD------LEEYDAIYVCGP-EIMMYKVLEILDERGV 191 (233)
T ss_pred eCCCCcccceehHHHhhhc------ccCCCEEEEECC-HHHHHHHHHHHHhcCC
Confidence 21 1223567776554321 123468999999 8999999999977543
No 66
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.87 E-value=9.5e-22 Score=191.66 Aligned_cols=172 Identities=15% Similarity=0.094 Sum_probs=126.4
Q ss_pred CChhhhHHhhcC---CCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEe
Q 010480 271 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 271 ~~~~~~l~~~~p---~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~ 347 (509)
..+|||+.+.+| ....|+|||+|.|.. .+.++|+|+.+ |.+|+||.++.+|+ .+.|..|
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~-~~~l~l~i~~~-----------G~~t~~l~~~~~G~------~l~i~gP 86 (243)
T cd06192 25 FRPGQFVFLRNFESPGLERIPLSLAGVDPE-EGTISLLVEIR-----------GPKTKLIAELKPGE------KLDVMGP 86 (243)
T ss_pred CCCCCeEEEecCCCCCceeeeeEeeecCCC-CCEEEEEEEEc-----------CchHHHHHhCCCCC------EEEEEcc
Confidence 457999876553 446799999999863 47899888642 88999998776654 3678888
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
.|.|.+..+..++++|||+|||||||++++++.... ..+++|+||+|+.+ |.+|.+||+++. . ....
T Consensus 87 ~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~------~~~v~l~~~~r~~~-d~~~~~el~~~~----~--~~~~ 153 (243)
T cd06192 87 LGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAAN------GNKVTVLAGAKKAK-EEFLDEYFELPA----D--VEIW 153 (243)
T ss_pred CCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHC------CCeEEEEEecCcHH-HHHHHHHHHhhc----C--eEEE
Confidence 888766544467999999999999999999998753 16899999999998 999999998872 1 2223
Q ss_pred EecCC--CCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 428 FSREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 428 ~Sr~~--~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
.+++. ...+++++... ... ...+..+|+||| +.|++++++.|.+.+
T Consensus 154 ~~~~~~~~~~g~v~~~~~-----~~~-~~~~~~v~icGp-~~mv~~~~~~l~~~g 201 (243)
T cd06192 154 TTDDGELGLEGKVTDSDK-----PIP-LEDVDRIIVAGS-DIMMKAVVEALDEWL 201 (243)
T ss_pred EecCCCCccceeechhhh-----hhh-cccCCEEEEECC-HHHHHHHHHHHHhhc
Confidence 33332 23455544311 011 123468999999 899999999998864
No 67
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.86 E-value=9.2e-22 Score=192.26 Aligned_cols=173 Identities=16% Similarity=0.185 Sum_probs=126.2
Q ss_pred CCChhhhHHhhcC-CCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCcee-eEEEe
Q 010480 270 KPPLGVFFAAIVP-RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVR 347 (509)
Q Consensus 270 ~~~~~~~l~~~~p-~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v-~v~~~ 347 (509)
...+|||+.+-++ ....|+|||+|.|.. .+.++|+|+.+ |..|.+|.++.+|+. + .+..|
T Consensus 26 ~~~pGQf~~l~~~~~~~~~pySi~s~~~~-~~~~~~~vk~~-----------G~~t~~l~~l~~G~~------v~~i~gP 87 (248)
T cd06219 26 KAKPGQFVIVRADEKGERIPLTIADWDPE-KGTITIVVQVV-----------GKSTRELATLEEGDK------IHDVVGP 87 (248)
T ss_pred cCCCCcEEEEEcCCCCCccceEeEEEcCC-CCEEEEEEEeC-----------CchHHHHHhcCCCCE------eeeeecC
Confidence 3468999865433 235799999998753 47899888642 888999987766543 5 47788
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
.|.|.+.. ..+++||||+||||||+++++++....+ .+++|+||+|+.+ |++|.+||++++++ ++.+
T Consensus 88 ~G~~~~~~-~~~~~lliagG~GiaP~~~~l~~~~~~~------~~v~l~~~~r~~~-~~~~~~el~~l~~~-----~~~~ 154 (248)
T cd06219 88 LGKPSEIE-NYGTVVFVGGGVGIAPIYPIAKALKEAG------NRVITIIGARTKD-LVILEDEFRAVSDE-----LIIT 154 (248)
T ss_pred CCCCeecC-CCCeEEEEeCcccHHHHHHHHHHHHHcC------CeEEEEEEcCCHH-HhhhHHHHHhhcCe-----EEEE
Confidence 88876543 3679999999999999999999976421 5799999999998 99999999999643 2222
Q ss_pred EecCC--CCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 010480 428 FSREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 479 (509)
Q Consensus 428 ~Sr~~--~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i 479 (509)
+++. ...+++++.+.+.. .+ ......||+||| ++|++++.+.|.+.
T Consensus 155 -~~~~~~~~~g~v~~~l~~~~---~~-~~~~~~vyiCGP-~~m~~~~~~~l~~~ 202 (248)
T cd06219 155 -TDDGSYGEKGFVTDPLKELI---ES-GEKVDLVIAIGP-PIMMKAVSELTRPY 202 (248)
T ss_pred -eCCCCCCccccchHHHHHHH---hc-cCCccEEEEECC-HHHHHHHHHHHHHc
Confidence 3332 24567766554321 11 123468999999 99999999988764
No 68
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.86 E-value=6.7e-22 Score=196.59 Aligned_cols=173 Identities=16% Similarity=0.158 Sum_probs=126.7
Q ss_pred CChhhhHHhhcCC-CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCcee-eEEEec
Q 010480 271 PPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQ 348 (509)
Q Consensus 271 ~~~~~~l~~~~p~-~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v-~v~~~~ 348 (509)
.-+|||+.+-++. ..+|+|||+|++.. ++.++|+|+.+ |..|.+|+++.+|+. + .|..|.
T Consensus 28 ~~pGQfv~l~~~~~~~~rpySias~~~~-~~~i~l~vk~~-----------G~~T~~L~~l~~Gd~------v~~i~GP~ 89 (281)
T PRK06222 28 AKPGQFVIVRIDEKGERIPLTIADYDRE-KGTITIVFQAV-----------GKSTRKLAELKEGDS------ILDVVGPL 89 (281)
T ss_pred CCCCeEEEEEeCCCCCceeeEeeEEcCC-CCEEEEEEEeC-----------CcHHHHHhcCCCCCE------EeeEEcCC
Confidence 4589999765443 34689999998753 57899988753 889999997766543 5 588888
Q ss_pred CCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEE
Q 010480 349 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 428 (509)
Q Consensus 349 g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~ 428 (509)
|+|...+. .+++||||+|+||||++++++++.... .+++|+||+|+.+ |++|.+||+++... +++ .
T Consensus 90 G~~~~~~~-~~~~llIaGGiGiaPl~~l~~~l~~~~------~~v~l~~g~r~~~-d~~~~~el~~~~~~-----~~v-~ 155 (281)
T PRK06222 90 GKPSEIEK-FGTVVCVGGGVGIAPVYPIAKALKEAG------NKVITIIGARNKD-LLILEDEMKAVSDE-----LYV-T 155 (281)
T ss_pred CCCcccCC-CCeEEEEeCcCcHHHHHHHHHHHHHCC------CeEEEEEecCCHH-HhhcHHHHHhhCCe-----EEE-E
Confidence 88665433 579999999999999999999876421 5799999999998 99999999987642 222 2
Q ss_pred ecCC--CCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 429 SREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 429 Sr~~--~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+.+. +.+++|++.+.+. +.+ ......||+||| ++|++++.+.+.+..
T Consensus 156 ~~d~~~g~~G~v~~~l~~~---~~~-~~~~~~vy~CGP-~~M~~~v~~~l~~~g 204 (281)
T PRK06222 156 TDDGSYGRKGFVTDVLKEL---LES-GKKVDRVVAIGP-VIMMKFVAELTKPYG 204 (281)
T ss_pred cCCCCcCcccchHHHHHHH---hhc-CCCCcEEEEECC-HHHHHHHHHHHHhcC
Confidence 3332 2456777655432 111 111457999999 999999999887654
No 69
>PLN02252 nitrate reductase [NADPH]
Probab=99.86 E-value=1.3e-21 Score=219.15 Aligned_cols=195 Identities=15% Similarity=0.198 Sum_probs=137.5
Q ss_pred CChhhhHHhhcC---CCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEe
Q 010480 271 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 271 ~~~~~~l~~~~p---~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~ 347 (509)
+++||++.+.++ ....|+|||+|.+.. .+.++|+|+++...........|.+|+||.++.+|+. +.|..|
T Consensus 665 l~pGQhV~l~~~~~g~~~~R~YSpaS~~~~-~g~lel~VK~~~~~~~~~~p~gG~~S~~L~~L~vGd~------V~V~GP 737 (888)
T PLN02252 665 LPVGKHVFLCATINGKLCMRAYTPTSSDDE-VGHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPIGDT------IDVKGP 737 (888)
T ss_pred CCCCCEEEEEEecCCeEEEeeeEecccCCC-CCEEEEEEEEEeccccCccCCCCchhhHHhcCCCCCE------EEEecC
Confidence 467888754432 124699999999864 5789999987632111111246999999988766543 567777
Q ss_pred cCCC--------CCCCC--CCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHH
Q 010480 348 QSNF--------KLPAD--AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQ 417 (509)
Q Consensus 348 ~g~F--------~lp~~--~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~ 417 (509)
.|.| .++.. ..++++|||||||||||++||++++.... +..+++||||+|+.+ |++|++||+++++
T Consensus 738 ~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~~~---d~t~i~Liyg~Rt~~-Dil~~eEL~~la~ 813 (888)
T PLN02252 738 LGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRDPE---DKTEMSLVYANRTED-DILLREELDRWAA 813 (888)
T ss_pred ccceeecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhccC---CCCcEEEEEEECCHH-HhhHHHHHHHHHH
Confidence 6665 44422 24799999999999999999999876421 236899999999998 9999999999998
Q ss_pred cC-CcCeEEEEEecCC-C----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHH-HHHHHHHHH
Q 010480 418 SG-ALSQLIVAFSREG-P----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARD-VHRTLHTIV 480 (509)
Q Consensus 418 ~~-~~~~~~~a~Sr~~-~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~-v~~~L~~i~ 480 (509)
.+ ..++++.++|++. . .+++|++.+.+. .......+..+|+||| ++|++. +...|.+++
T Consensus 814 ~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~---~l~~~~~~~~vyiCGP-p~Mi~~av~~~L~~~G 879 (888)
T PLN02252 814 EHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLRE---HLPEGGDETLALMCGP-PPMIEFACQPNLEKMG 879 (888)
T ss_pred hCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHH---hcccCCCCeEEEEeCC-HHHHHHHHHHHHHHcC
Confidence 75 4567888888743 1 346666544321 1110123578999999 899984 777776643
No 70
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.86 E-value=5e-21 Score=186.00 Aligned_cols=183 Identities=16% Similarity=0.252 Sum_probs=141.8
Q ss_pred CCChhhhHHhhcCC---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEE
Q 010480 270 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 346 (509)
Q Consensus 270 ~~~~~~~l~~~~p~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~ 346 (509)
.+|.||.+...+|. .--|+||-.|++.. .+.++|.|++. .+|.+|.||.++..|+. +.+.+
T Consensus 81 ~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~-~g~~~l~VK~Y---------~~G~mS~~l~~LkiGd~------ve~rG 144 (286)
T KOG0534|consen 81 GLPIGQHVVLKAPIGGKLVVRPYTPVSLDDD-KGYFDLVVKVY---------PKGKMSQHLDSLKIGDT------VEFRG 144 (286)
T ss_pred CcccceEEEEEecCCCcEEEEecCCccCccc-cceEEEEEEec---------cCCcccHHHhcCCCCCE------EEEec
Confidence 35777777555443 24699999999875 57999988764 35999999999988754 67888
Q ss_pred ecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCC-cCeEE
Q 010480 347 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLI 425 (509)
Q Consensus 347 ~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~-~~~~~ 425 (509)
|.|.|.+++...+.+.|||||||||||..++++++...+ +..+++|+|++++++ |+++++||+.++++.+ .+.++
T Consensus 145 P~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~~---d~tki~lly~N~te~-DILlr~eL~~la~~~p~rf~~~ 220 (286)
T KOG0534|consen 145 PIGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDPE---DTTKISLLYANKTED-DILLREELEELASKYPERFKVW 220 (286)
T ss_pred CccceEecCCCcceEEEEecccchhhHHHHHHHHhcCCC---CCcEEEEEEecCCcc-ccchHHHHHHHHhhCcceEEEE
Confidence 889998887667899999999999999999999986432 357899999999998 9999999999999877 77888
Q ss_pred EEEecCCC----CcccchhhHhhcHHHHHHHH---hC-CCEEEEecCCcchHHH-HHHHHHHH
Q 010480 426 VAFSREGP----TKEYVQHKMMEKSSDIWNML---SE-GAYLYVCGDAKSMARD-VHRTLHTI 479 (509)
Q Consensus 426 ~a~Sr~~~----~~~yvq~~i~~~~~~v~~~l---~~-~~~iyvCGp~~~M~~~-v~~~L~~i 479 (509)
.+.+++.. .++||...+.. ..+ .. ...++|||| ++|.+. +...|.++
T Consensus 221 y~v~~~~~~w~~~~g~It~~~i~------~~l~~~~~~~~~~liCGP-p~m~~~~~~~~le~L 276 (286)
T KOG0534|consen 221 YVVDQPPEIWDGSVGFITKDLIK------EHLPPPKEGETLVLICGP-PPMINGAAQGNLEKL 276 (286)
T ss_pred EEEcCCcccccCccCccCHHHHH------hhCCCCCCCCeEEEEECC-HHHHhHHHHHHHHhc
Confidence 88887653 45666543332 222 12 478999999 899974 44444443
No 71
>PRK05802 hypothetical protein; Provisional
Probab=99.85 E-value=1.6e-21 Score=196.57 Aligned_cols=169 Identities=11% Similarity=0.081 Sum_probs=122.4
Q ss_pred ChhhhHHhhcCC---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEec
Q 010480 272 PLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 348 (509)
Q Consensus 272 ~~~~~l~~~~p~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~ 348 (509)
-+|||+.+-+|. ...|+|||+|+|.. .+.++|+|+++ |..|.+|+++.+|+. +.|..|.
T Consensus 96 ~PGQFv~l~~~~~~~~~~rP~SI~~~~~~-~g~l~l~ik~~-----------G~~T~~L~~l~~Gd~------l~v~GP~ 157 (320)
T PRK05802 96 YPGSFVFLRNKNSSSFFDVPISIMEADTE-ENIIKVAIEIR-----------GVKTKKIAKLNKGDE------ILLRGPY 157 (320)
T ss_pred CCCceEEEEEcCCCCEeEEeeEecccCCC-CCEEEEEEEec-----------ChhHHHHhcCCCCCE------EEEeCCC
Confidence 589999654432 33599999999863 57899988754 899999998777643 6677775
Q ss_pred --CCCCCC---CCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCe
Q 010480 349 --SNFKLP---ADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQ 423 (509)
Q Consensus 349 --g~F~lp---~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~ 423 (509)
|.|.++ ....+++||||||+||||++++++++...+ .+++|+||+|+++ |++|.++|+++..+..+++
T Consensus 158 GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~------~~v~li~g~r~~~-~~~~~~el~~~~~~~~~~~ 230 (320)
T PRK05802 158 WNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG------NKIIVIIDKGPFK-NNFIKEYLELYNIEIIELN 230 (320)
T ss_pred CcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC------CcEEEEEeCCCHH-HHHHHHHHHHhhCceEEEE
Confidence 447663 233568999999999999999999987532 4799999999998 9999999999865422211
Q ss_pred EEEEEecCCC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 010480 424 LIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 479 (509)
Q Consensus 424 ~~~a~Sr~~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i 479 (509)
+..++. .+++|++.+.+. +...||+||| +.|+++|.+.+.++
T Consensus 231 ----~~ddG~~~~~~~g~v~~~l~~~---------~~~~vy~CGP-~~M~k~v~~~l~~~ 276 (320)
T PRK05802 231 ----LLDDGELSEEGKDILKEIIKKE---------DINLIHCGGS-DILHYKIIEYLDKL 276 (320)
T ss_pred ----ecccCCCCccccchHHHHhcCC---------CCCEEEEECC-HHHHHHHHHHHhhh
Confidence 112221 123444433221 2367999999 89999999998874
No 72
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.84 E-value=7.3e-21 Score=185.66 Aligned_cols=176 Identities=19% Similarity=0.288 Sum_probs=132.7
Q ss_pred hhhhHHhhcCC----CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEec
Q 010480 273 LGVFFAAIVPR----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 348 (509)
Q Consensus 273 ~~~~l~~~~p~----~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~ 348 (509)
+|||--+-++. +.|+|||||++... .+++|+|+.. |..|.-|.+..+.|+ ++.|.+|.
T Consensus 245 aGQFAfLk~~~~~~~~~~HPFTIa~s~~~--sel~FsIK~L-----------GD~Tk~l~dnLk~G~-----k~~vdGPY 306 (438)
T COG4097 245 AGQFAFLKIEIEEFRMRPHPFTIACSHEG--SELRFSIKAL-----------GDFTKTLKDNLKVGT-----KLEVDGPY 306 (438)
T ss_pred CCceEEEEeccccccCCCCCeeeeeCCCC--ceEEEEehhh-----------hhhhHHHHHhccCCc-----eEEEecCc
Confidence 57764322343 45999999999763 4899998765 999999998665554 57889999
Q ss_pred CCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEE
Q 010480 349 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 428 (509)
Q Consensus 349 g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~ 428 (509)
|.|........ -|+||||+|||||+|+++.....+. ..++.|||+||+.+ +.+|.+||++++++.+++.++..-
T Consensus 307 G~F~~~~g~~~-QVWIAGGIGITPFis~l~~l~~~~s----~~~V~L~Y~~~n~e-~~~y~~eLr~~~qkl~~~~lHiiD 380 (438)
T COG4097 307 GKFDFERGLNT-QVWIAGGIGITPFISMLFTLAERKS----DPPVHLFYCSRNWE-EALYAEELRALAQKLPNVVLHIID 380 (438)
T ss_pred ceeecccCCcc-cEEEecCcCcchHHHHHHhhccccc----CCceEEEEEecCCc-hhHHHHHHHHHHhcCCCeEEEEec
Confidence 99988754322 8999999999999999999876432 27899999999998 899999999999987776777643
Q ss_pred ecCCCCcccchhh-HhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHH
Q 010480 429 SREGPTKEYVQHK-MMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQ 481 (509)
Q Consensus 429 Sr~~~~~~yvq~~-i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 481 (509)
| +..+|+... +.... + ......||+||| ++|+++++..|++...
T Consensus 381 S---s~~g~l~~e~ler~~----~-~~~~~sv~fCGP-~~m~dsL~r~l~~~~~ 425 (438)
T COG4097 381 S---SKDGYLDQEDLERYP----D-RPRTRSVFFCGP-IKMMDSLRRDLKKQNV 425 (438)
T ss_pred C---CCCCccCHHHhhccc----c-ccCcceEEEEcC-HHHHHHHHHHHHHcCC
Confidence 3 345666432 22211 1 012348999999 9999999999988643
No 73
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.82 E-value=1.7e-20 Score=218.20 Aligned_cols=187 Identities=17% Similarity=0.260 Sum_probs=136.4
Q ss_pred CChhhhHHhhcC--C-CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEe
Q 010480 271 PPLGVFFAAIVP--R-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 271 ~~~~~~l~~~~p--~-~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~ 347 (509)
..+|||+.+.++ . ...|+|||+|.|. ..+.++|+|+. ..|.+|+||+++.+|+. +.|..+
T Consensus 948 ~~pGQfv~l~~~~~g~~~~R~YS~~S~p~-~~~~i~l~Vr~----------~~G~~S~~L~~l~~Gd~------v~v~gp 1010 (1167)
T PTZ00306 948 LTLGQFIAIRGDWDGQQLIGYYSPITLPD-DLGVISILARG----------DKGTLKEWISALRPGDS------VEMKAC 1010 (1167)
T ss_pred CCCCeEEEEEeeeCCeEEEEEeccCCCCC-CCCeEEEEEEc----------CCChhHHHHhhCCCCCE------EEEeCC
Confidence 568999976443 1 2359999999996 45778887741 35899999988777653 566554
Q ss_pred cC----------CCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHH
Q 010480 348 QS----------NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQ 417 (509)
Q Consensus 348 ~g----------~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~ 417 (509)
.| .|.++....+|+||||+|||||||+||+++++.... .....+++||||+|+.+ |++|++||++|++
T Consensus 1011 ~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~~-~~~~~~i~Llyg~r~~~-dl~~~~eL~~l~~ 1088 (1167)
T PTZ00306 1011 GGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPY-VDSIESIRLIYAAEDVS-ELTYRELLESYRK 1088 (1167)
T ss_pred cCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCcc-cCCCceEEEEEEeCCHH-HhhHHHHHHHHHH
Confidence 33 466665556899999999999999999998875321 01235899999999998 9999999999988
Q ss_pred cCC-cCeEEEEEecCCC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 418 SGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 418 ~~~-~~~~~~a~Sr~~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+.. .+++++++|++.. ..++|++.+.+. +......+..||+||| ++|++++.+.|++.+
T Consensus 1089 ~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~---~l~~~~~~~~vyiCGP-~~mv~~v~~~L~~~G 1152 (1167)
T PTZ00306 1089 ENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQS---ALQPPSKDLLVAICGP-PVMQRAVKADLLALG 1152 (1167)
T ss_pred HCCCCEEEEEEECCCCcccCCCCCCCCHHHHHH---hcCCCCCCeEEEEeCC-HHHHHHHHHHHHHcC
Confidence 754 4688888887532 346666543221 1111124578999999 899999999988754
No 74
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.78 E-value=5.2e-19 Score=198.64 Aligned_cols=173 Identities=17% Similarity=0.163 Sum_probs=129.2
Q ss_pred CChhhhHHhhcCCC-CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCcee-eEEEec
Q 010480 271 PPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQ 348 (509)
Q Consensus 271 ~~~~~~l~~~~p~~-~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v-~v~~~~ 348 (509)
.-+|||+.+.++.. .+|+|||+|.+.. .+.++|+|+.+ |.+|.+|+++.+|+. + .|..|.
T Consensus 28 ~~pGQFv~l~~~~~~~~rp~Si~~~~~~-~g~i~~~vk~v-----------G~~T~~L~~l~~Gd~------v~~v~GP~ 89 (752)
T PRK12778 28 RKPGQFVIVRVGEKGERIPLTIADADPE-KGTITLVIQEV-----------GLSTTKLCELNEGDY------ITDVVGPL 89 (752)
T ss_pred CCCCeeEEEEeCCCCCeeEEEeeeeCCC-CCEEEEEEEEc-----------CchHHHHhcCCCCCE------eCeEeCCC
Confidence 45899997654433 4589999999863 57899998765 889999998776643 5 578888
Q ss_pred CCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEE
Q 010480 349 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 428 (509)
Q Consensus 349 g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~ 428 (509)
|+|..... .++++|||||+||||++++++++...+ .+++||||+|+.+ |++|.+||++|..+ ++++
T Consensus 90 G~~~~~~~-~~~~llvaGG~GiaPl~~l~~~l~~~~------~~v~l~~g~r~~~-~l~~~~el~~~~~~-----~~~~- 155 (752)
T PRK12778 90 GNPSEIEN-YGTVVCAGGGVGVAPMLPIVKALKAAG------NRVITILGGRSKE-LIILEDEMRESSDE-----VIIM- 155 (752)
T ss_pred CCCccCCC-CCeEEEEECCEeHHHHHHHHHHHHHCC------CeEEEEeccCCHH-HhhhHHHHHhhcCe-----EEEE-
Confidence 88876533 478999999999999999999887532 4799999999998 99999999988642 2222
Q ss_pred ecCC--CCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 429 SREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 429 Sr~~--~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+.++ +.+++|++.+.+.. ........||+||| ++|++++.+.+.+.+
T Consensus 156 t~dg~~g~~G~v~~~l~~~~----~~~~~~~~vy~CGP-~~M~~~v~~~l~~~g 204 (752)
T PRK12778 156 TDDGSYGRKGLVTDGLEEVI----KRETKVDKVFAIGP-AIMMKFVCLLTKKYG 204 (752)
T ss_pred ECCCCCCCcccHHHHHHHHh----hcCCCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 2332 25678877654421 11112357999999 999999999887643
No 75
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.77 E-value=8.5e-19 Score=148.89 Aligned_cols=104 Identities=25% Similarity=0.444 Sum_probs=80.0
Q ss_pred EEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCc-CeEEEEEecCCC----Cccc
Q 010480 363 MIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL-SQLIVAFSREGP----TKEY 437 (509)
Q Consensus 363 ~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~-~~~~~a~Sr~~~----~~~y 437 (509)
|||||||||||+||++++.... ..++++||||+|+.+ |++|+++|+++++.... ++++.+ ++... .++|
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~ 74 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERN----DNRKVTLFYGARTPE-DLLFRDELEALAQEYPNRFHVVYV-SSPDDGWDGFKGR 74 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHT----CTSEEEEEEEESSGG-GSTTHHHHHHHHHHSTTCEEEEEE-TTTTSSTTSEESS
T ss_pred CeecceeHHHHHHHHHHHHHhC----CCCCEEEEEEEcccc-cccchhHHHHHHhhcccccccccc-cccccccCCceee
Confidence 7999999999999999998752 237999999999998 99999999999987664 333333 43322 4678
Q ss_pred chhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHH
Q 010480 438 VQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHR 474 (509)
Q Consensus 438 vq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~ 474 (509)
|++.+.+.... ......+.+||+||| ++|+++|++
T Consensus 75 v~~~~~~~~~~-~~~~~~~~~v~iCGp-~~m~~~v~~ 109 (109)
T PF00175_consen 75 VTDLLLEDLLP-EKIDPDDTHVYICGP-PPMMKAVRK 109 (109)
T ss_dssp HHHHHHHHHHH-HHHCTTTEEEEEEEE-HHHHHHHHH
T ss_pred hhHHHHHhhcc-cccCCCCCEEEEECC-HHHHHHhcC
Confidence 99888654222 112246899999999 999999875
No 76
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.77 E-value=7e-19 Score=170.54 Aligned_cols=171 Identities=13% Similarity=0.133 Sum_probs=117.4
Q ss_pred CChhhhHHhhcCC----------------------CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCcccc-CcCchhh
Q 010480 271 PPLGVFFAAIVPR----------------------LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHK-GLCSTWM 327 (509)
Q Consensus 271 ~~~~~~l~~~~p~----------------------~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~-G~~S~~L 327 (509)
..+||++.+.+|. ...|+|||+|.+. ..++++|+|+++ .. |.+|+||
T Consensus 27 ~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~-~~~~l~~~v~~~---------~~~G~~s~~l 96 (235)
T cd06193 27 DGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDP-EAGELDIDFVLH---------GDEGPASRWA 96 (235)
T ss_pred CCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcC-CCCEEEEEEEeC---------CCCCchHHHH
Confidence 3479998765553 3469999999875 357899888653 23 8999999
Q ss_pred hhcCCCccCCCCceeeEEEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccc
Q 010480 328 KNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYI 407 (509)
Q Consensus 328 ~~~~~~~~~~~~~~v~v~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~l 407 (509)
+++.+|+ .+.+..|.|.|.++. ..++++|||+||||||+++|+++.... .+++++|++|+.+ |.+
T Consensus 97 ~~l~~Gd------~v~v~gP~G~~~~~~-~~~~~vlia~GtGi~p~~~il~~~~~~-------~~~~~~~~~~~~~-d~~ 161 (235)
T cd06193 97 ASAQPGD------TLGIAGPGGSFLPPP-DADWYLLAGDETALPAIAAILEELPAD-------ARGTALIEVPDAA-DEQ 161 (235)
T ss_pred hhCCCCC------EEEEECCCCCCCCCC-CcceEEEEeccchHHHHHHHHHhCCCC-------CeEEEEEEECCHH-Hcc
Confidence 8876654 377888889998864 357899999999999999999986431 5799999999986 655
Q ss_pred cHHHHHHHHHcCCcCeEEEEEecCCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 010480 408 YEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 479 (509)
Q Consensus 408 y~~el~~~~~~~~~~~~~~a~Sr~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i 479 (509)
+.+++. .++++.+.+++.. .+.....+.. . ......+..+|+||| ++|++++++.|.+.
T Consensus 162 ~l~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~---~-~~~~~~~~~vyicGp-~~mv~~v~~~l~~~ 220 (235)
T cd06193 162 PLPAPA-------GVEVTWLHRGGAE-AGELALLAVR---A-LAPPAGDGYVWIAGE-AGAVRALRRHLREE 220 (235)
T ss_pred ccCCCC-------CcEEEEEeCCCCC-cchhHHHHHh---c-ccCCCCCeEEEEEcc-HHHHHHHHHHHHHc
Confidence 443321 2355555443322 1111110000 0 000124579999999 89999999988763
No 77
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.76 E-value=3.9e-18 Score=162.39 Aligned_cols=169 Identities=17% Similarity=0.207 Sum_probs=116.8
Q ss_pred CCChhhhHHhhcCCC----CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEE
Q 010480 270 KPPLGVFFAAIVPRL----QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF 345 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~----~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~ 345 (509)
...+||++.+.+|.. ..|+|||+|.|....+.++|+|+.. .|..|..+..+........+..+.|.
T Consensus 24 ~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~----------~G~~t~~~~~~~~~~~~~~~~~v~v~ 93 (210)
T cd06186 24 KWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAK----------KGFTTRLLRKALKSPGGGVSLKVLVE 93 (210)
T ss_pred ccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEec----------CChHHHHHHHHHhCcCCCceeEEEEE
Confidence 456899987666654 6899999999864247899888642 38777777666520000112246677
Q ss_pred EecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCc-cccHHHHHHHHHcCCcCeE
Q 010480 346 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMD-YIYEDELNNFVQSGALSQL 424 (509)
Q Consensus 346 ~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d-~ly~~el~~~~~~~~~~~~ 424 (509)
+|.|.|..+.....++|||||||||||++++++++...........++.|+|++|+.+ | ..|.++|.+..+.....++
T Consensus 94 GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~-~~~~~~~~l~~~~~~~~~~~~ 172 (210)
T cd06186 94 GPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDRE-DLEWFLDELRAAQELEVDGEI 172 (210)
T ss_pred CCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHH-HhHHHHHHHHhhhhccCCceE
Confidence 7778876444456789999999999999999999876532111236899999999997 7 4799999751111111023
Q ss_pred EEEEecCCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHH
Q 010480 425 IVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 478 (509)
Q Consensus 425 ~~a~Sr~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~ 478 (509)
++..++ +|+||| .+|+++++....+
T Consensus 173 ~i~~T~----------------------------v~~CGp-~~~~~~~~~~~~~ 197 (210)
T cd06186 173 EIYVTR----------------------------VVVCGP-PGLVDDVRNAVAK 197 (210)
T ss_pred EEEEee----------------------------EEEECc-hhhccHHHHHHhh
Confidence 333332 999999 8999999988766
No 78
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.74 E-value=1e-17 Score=190.15 Aligned_cols=183 Identities=14% Similarity=0.118 Sum_probs=126.1
Q ss_pred CChhhhHHhhcC-CCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCcee-eEEEec
Q 010480 271 PPLGVFFAAIVP-RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQ 348 (509)
Q Consensus 271 ~~~~~~l~~~~p-~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v-~v~~~~ 348 (509)
..+|||+.+.++ ....|+|||+|.+.. .+.++|+|+.+ |..|.+|.++.+|+. + .|..|.
T Consensus 677 ~~PGQFv~L~~~~~ge~rP~SIas~~~~-~g~i~l~Vk~v-----------G~~T~~L~~lk~Gd~------l~~I~GPl 738 (944)
T PRK12779 677 AQAGQFVRVLPWEKGELIPLTLADWDAE-KGTIDLVVQGM-----------GTSSLEINRMAIGDA------FSGIAGPL 738 (944)
T ss_pred CCCCceEEEEeCCCCCEEeEEccCCCCC-CCEEEEEEEee-----------ccHHHHHhcCCCcCE------EeeeecCC
Confidence 458999965432 234599999998753 57899988754 888888888777643 5 377787
Q ss_pred CCCC-CCC-CCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHH---HHHHHHcCC-cC
Q 010480 349 SNFK-LPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDE---LNNFVQSGA-LS 422 (509)
Q Consensus 349 g~F~-lp~-~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~e---l~~~~~~~~-~~ 422 (509)
|.|. ++. ...+++||||||+||||+++++++....+ .+++|+||+|+.+ |++|.++ |++|++... .+
T Consensus 739 G~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g------~~V~li~G~Rs~e-dl~~~del~~L~~la~~~~~~~ 811 (944)
T PRK12779 739 GRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG------NHVTLISGFRAKE-FLFWTGDDERVGKLKAEFGDQL 811 (944)
T ss_pred CCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHCC------CCEEEEEEeCCHH-HhhhHHHHHHHHHHHHHcCCCe
Confidence 8764 433 22468999999999999999999876531 5799999999997 8888766 455665433 33
Q ss_pred eEEEEEecCC--CCcccchhhHhhcHHHHHHHHh-CCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 423 QLIVAFSREG--PTKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 423 ~~~~a~Sr~~--~~~~yvq~~i~~~~~~v~~~l~-~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+++++ +.++ +.+++|++.+.+........-. +...||+||| ++|+++|.+.|.+.+
T Consensus 812 ~v~~t-tddgs~G~~G~Vt~~l~~ll~~~~~~~~~~~~~Vy~CGP-~~Mmkav~~~l~~~G 870 (944)
T PRK12779 812 DVIYT-TNDGSFGVKGFVTGPLEEMLKANQQGKGRTIAEVIAIGP-PLMMRAVSDLTKPYG 870 (944)
T ss_pred EEEEE-ecCCCCCCccccChHHHHHHHhcccccccCCcEEEEECC-HHHHHHHHHHHHHcC
Confidence 44433 4332 2467887765432111000000 1367999999 999999999887654
No 79
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.68 E-value=1.5e-16 Score=182.17 Aligned_cols=172 Identities=15% Similarity=0.170 Sum_probs=122.8
Q ss_pred CChhhhHHhhcCC-CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhh-hcCCCccCCCCcee-eEEEe
Q 010480 271 PPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWA-PIFVR 347 (509)
Q Consensus 271 ~~~~~~l~~~~p~-~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~-~~~~~~~~~~~~~v-~v~~~ 347 (509)
.-+|||+.+.++. ..+|+|||++.+.. .+.+.|.|+.+ |..|.||+ ++.+|+. + .+..|
T Consensus 28 ~~PGQFV~l~~~~~~errplSIa~~~~~-~g~i~l~vk~v-----------G~~T~~L~~~lk~Gd~------l~~v~GP 89 (1006)
T PRK12775 28 AEPGHFVMLRLYEGAERIPLTVADFDRK-KGTITMVVQAL-----------GKTTREMMTKFKAGDT------FEDFVGP 89 (1006)
T ss_pred CCCCeeEEEEeCCCCeeEEEEecCcCCC-CCEEEEEEEec-----------CcHHHHHHhcCCCCCE------EeeeecC
Confidence 3589999655433 34699999998753 47788877653 88999995 5555543 4 56777
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
.|.|.... ..+++||||||+||||+++|++++...+ .+++++||+|+.+ +++|.+||+++... ++++
T Consensus 90 lG~~~~~~-~~~~vllVaGGiGIAPl~s~~r~l~~~g------~~v~li~g~R~~~-~l~~~del~~~~~~-----~~v~ 156 (1006)
T PRK12775 90 LGLPQHID-KAGHVVLVGGGLGVAPVYPQLRAFKEAG------ARTTGIIGFRNKD-LVFWEDKFGKYCDD-----LIVC 156 (1006)
T ss_pred CCCCCCCC-CCCeEEEEEEhHHHHHHHHHHHHHHhCC------CcEEEEEeCCChH-HcccHHHHHhhcCc-----EEEE
Confidence 77765432 2468999999999999999999876432 5699999999997 99999999876532 2222
Q ss_pred EecCC--CCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 428 FSREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 428 ~Sr~~--~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+.++ +.+++|++.+.+.. .. .....||+||| +.|+++|.+.+++..
T Consensus 157 -tddgs~G~~G~vt~~l~~~l----~~-~~~d~vy~CGP-~~Mm~av~~~~~~~g 204 (1006)
T PRK12775 157 -TDDGSYGKPGFVTAALKEVC----EK-DKPDLVVAIGP-LPMMNACVETTRPFG 204 (1006)
T ss_pred -ECCCCCCCCCChHHHHHHHh----cc-CCCCEEEEECC-HHHHHHHHHHHHHCC
Confidence 3332 24678877665421 10 12357999999 899999999887643
No 80
>PLN02292 ferric-chelate reductase
Probab=99.56 E-value=2.1e-14 Score=156.69 Aligned_cols=178 Identities=16% Similarity=0.145 Sum_probs=116.7
Q ss_pred CChhhhHHhhcCC---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEe
Q 010480 271 PPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 271 ~~~~~~l~~~~p~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~ 347 (509)
..+||++-+.+|. .+.|+|||+|+|..+++.++++|+. .|..|++|.+....++......+.+.+|
T Consensus 352 ~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~-----------~G~~T~~L~~~l~~gd~i~~~~V~VeGP 420 (702)
T PLN02292 352 YSPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKS-----------QGKWSTKLYHMLSSSDQIDRLAVSVEGP 420 (702)
T ss_pred cCCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEc-----------CCchhHHHHHhCCCCCccccceEEEECC
Confidence 3467766544564 4679999999985445788888863 3788999988755443221224567778
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhc-CCCCCeEEEEeccCCCCccccHHHHH-------HHHHcC
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELN-------NFVQSG 419 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~-~~~~~~~L~~G~R~~~~d~ly~~el~-------~~~~~~ 419 (509)
.|.+..+....++++|||||+||||++++++++.+..... ...+++.|+|++|+.+ |.++.+++. ++++..
T Consensus 421 YG~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~~~-Dl~~ld~l~~e~~~~~~l~~~~ 499 (702)
T PLN02292 421 YGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKNSS-DLSMLDLILPTSGLETELSSFI 499 (702)
T ss_pred ccCCccccccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhHHHHHHHhhhhHHHHhhcC
Confidence 8877644334578999999999999999999987642211 1125899999999998 998876554 223333
Q ss_pred CcCeEEEEEecCCCCc-ccchhhHhhcHHHHHHHH-----hCCCEEEEecCC
Q 010480 420 ALSQLIVAFSREGPTK-EYVQHKMMEKSSDIWNML-----SEGAYLYVCGDA 465 (509)
Q Consensus 420 ~~~~~~~a~Sr~~~~~-~yvq~~i~~~~~~v~~~l-----~~~~~iyvCGp~ 465 (509)
..++...++|+...+ .|-++ ..+.+.+.+ .++..+.+|||.
T Consensus 500 -~~~i~iyvTr~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~~~~~Gp~ 546 (702)
T PLN02292 500 -DIQIKAFVTREKEAGVKESTG----NMNIIKTLWFKPNLSDQPISPILGPN 546 (702)
T ss_pred -CceEEEEEeCCCCCCCccccc----chhhhhhhcCCCCCCCCceEEEeCCC
Confidence 336777788875432 12122 111121221 256789999993
No 81
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.53 E-value=4.5e-14 Score=154.50 Aligned_cols=182 Identities=14% Similarity=0.138 Sum_probs=119.8
Q ss_pred CCChhhhHHhhcCCC---CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCC----Ccc-CCCCce
Q 010480 270 KPPLGVFFAAIVPRL---QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLP----MEK-SNDCSW 341 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~---~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~----~~~-~~~~~~ 341 (509)
+..+||++.+-+|.. +.|+|||+|+|..+++.++++|+.. |-.|+.|.+... .|. ......
T Consensus 338 ~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~-----------gG~T~~L~~~i~~~l~~g~~~~~~~~ 406 (722)
T PLN02844 338 KYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCE-----------GGWTNSLYNKIQAELDSETNQMNCIP 406 (722)
T ss_pred CcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeC-----------CCchHHHHHHHHhhccCCCCcccceE
Confidence 445899987655653 5799999998864557788887642 445666654322 121 101124
Q ss_pred eeEEEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhc-CCCCCeEEEEeccCCCCccccHHHHHH-----H
Q 010480 342 APIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNN-----F 415 (509)
Q Consensus 342 v~v~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~-~~~~~~~L~~G~R~~~~d~ly~~el~~-----~ 415 (509)
+.|..|.|.|..+....++++||||||||||++|++++........ ....++.|+|++|+.+ |..|.+++.. +
T Consensus 407 v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~vR~~~-dL~~~del~~~l~~~~ 485 (722)
T PLN02844 407 VAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVVKKSQ-DICLLNPISSLLLNQS 485 (722)
T ss_pred EEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhhHHHHHHHhHHhH
Confidence 5667778988765444578999999999999999999987642211 1135799999999998 9999999863 2
Q ss_pred HHcCCcCeEEEEEecCCCCcccchhhHhhcHHHHHHH-H-hCCCEEEEecCC
Q 010480 416 VQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNM-L-SEGAYLYVCGDA 465 (509)
Q Consensus 416 ~~~~~~~~~~~a~Sr~~~~~~yvq~~i~~~~~~v~~~-l-~~~~~iyvCGp~ 465 (509)
.+.. ..+++...+|+......+.+.+... ....++ + .+..++.+|||.
T Consensus 486 ~~~~-~lkl~iyVTRE~~~~~rl~~~i~~~-~~~~~~~~~~~~~~~~i~G~~ 535 (722)
T PLN02844 486 SNQL-NLKLKVFVTQEEKPNATLRELLNQF-SQVQTVNFSTKCSRYAIHGLE 535 (722)
T ss_pred HHhc-CceEEEEECCCCCCCCchhhHhhcc-chhhhcCCCCCCCceEEeCCC
Confidence 2222 3467777888765544555555442 111111 2 345789999994
No 82
>PLN02631 ferric-chelate reductase
Probab=99.52 E-value=3.1e-14 Score=154.99 Aligned_cols=149 Identities=15% Similarity=0.176 Sum_probs=108.2
Q ss_pred CCCChhhhHHhhcCC---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCC-ccCCCCceeeE
Q 010480 269 AKPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPM-EKSNDCSWAPI 344 (509)
Q Consensus 269 ~~~~~~~~l~~~~p~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~-~~~~~~~~v~v 344 (509)
.+.-+||++.+.+|. .+.|+|||+|+|..+++.++|+|+. .|..|++|.+.... ++ ...+.+
T Consensus 333 ~~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~-----------~Gg~T~~L~~~l~~~g~---~i~V~V 398 (699)
T PLN02631 333 LHYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRR-----------QGSWTQKLYTHLSSSID---SLEVST 398 (699)
T ss_pred CcCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEc-----------CChHHHHHHHhhhcCCC---eeEEEE
Confidence 345578887655565 4679999999986445788888863 38889999875432 22 123556
Q ss_pred EEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhc-CCCCCeEEEEeccCCCCccccHHHHHHH------HH
Q 010480 345 FVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNF------VQ 417 (509)
Q Consensus 345 ~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~-~~~~~~~L~~G~R~~~~d~ly~~el~~~------~~ 417 (509)
.+|.|.|..+.....++||||||+||||++|++++.+.+...+ .+.++++|+|++|+.+ |.+|.|||..+ .+
T Consensus 399 eGPYG~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~~-dL~f~deL~~l~~~~~~l~ 477 (699)
T PLN02631 399 EGPYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHYH-DLAFLDLIFPLDISVSDIS 477 (699)
T ss_pred ECCCCCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCHH-HhhhHHHHhhhccchhhhh
Confidence 6777877665445578999999999999999999988643211 1124799999999998 99999999863 12
Q ss_pred cCCcCeEEEEEecCCC
Q 010480 418 SGALSQLIVAFSREGP 433 (509)
Q Consensus 418 ~~~~~~~~~a~Sr~~~ 433 (509)
+ .+.++....||++.
T Consensus 478 ~-~ni~i~iyVTR~~~ 492 (699)
T PLN02631 478 R-LNLRIEAYITREDK 492 (699)
T ss_pred c-CceEEEEEEcCCCC
Confidence 2 34578888999754
No 83
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=99.35 E-value=2.3e-13 Score=127.79 Aligned_cols=182 Identities=18% Similarity=0.294 Sum_probs=108.2
Q ss_pred CCCCChhhhHHhhc--CCCC---CccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCcee
Q 010480 268 SAKPPLGVFFAAIV--PRLQ---PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA 342 (509)
Q Consensus 268 s~~~~~~~~l~~~~--p~~~---pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v 342 (509)
+....+||++..+- |++. -|.||.|+......+.++|.|+.+ -.|++|+|+++....|+. +
T Consensus 178 ~~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~~---------A~G~VS~~~H~~~KVGD~-----v 243 (385)
T KOG3378|consen 178 ISHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRRV---------AGGVVSNFVHDNLKVGDI-----V 243 (385)
T ss_pred eccCCCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEeeh---------hchhhHHHhhccccccce-----e
Confidence 44456899886432 3321 355555554443457788877654 459999999988777763 6
Q ss_pred eEEEecCCCCCCC---CCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcC
Q 010480 343 PIFVRQSNFKLPA---DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG 419 (509)
Q Consensus 343 ~v~~~~g~F~lp~---~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~ 419 (509)
.++.|.|+|.+.. +..+|++++|+|+||||+++||++.+.. |..| .|..-++++..+.
T Consensus 244 ~~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~C-------------~~~R------P~~~~~~~~~~K~ 304 (385)
T KOG3378|consen 244 GVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALLC-------------YSSR------PFKQWLEQLKLKY 304 (385)
T ss_pred eccCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHHhc-------------CCCC------cHHHHHHHHHHHH
Confidence 6888899998764 4569999999999999999999987642 2222 1222222221110
Q ss_pred -CcCeEEEEEecCCC--CcccchhhHhh--cHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHc
Q 010480 420 -ALSQLIVAFSREGP--TKEYVQHKMME--KSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQ 483 (509)
Q Consensus 420 -~~~~~~~a~Sr~~~--~~~yvq~~i~~--~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~ 483 (509)
.+.++.-.||.+.. .+.-|...+.. +.+.+.++-...++||.||| ..+|+.|.+.|.++..+-
T Consensus 305 k~~~K~~e~~~~E~s~~~~~IV~~~~~~iI~~~~L~~~~~s~~DiY~~G~-~~~M~~~~~~L~~L~~~~ 372 (385)
T KOG3378|consen 305 KENLKLKEFFSEESSVTKEQIVDEVMTRIINEEDLEKLDLSECDIYMLGP-NNYMRFVKQELVKLGVEP 372 (385)
T ss_pred HHHHHHHHHHHHhhccchhhhhhhhhhhhcCHHHhhhcChhhCceeeeCc-HHHHHHHHHHHHHhcCCc
Confidence 00011111222211 11222222211 11222222135799999999 899999999999987543
No 84
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=98.90 E-value=2.8e-09 Score=96.37 Aligned_cols=71 Identities=17% Similarity=0.370 Sum_probs=48.3
Q ss_pred CEEEEccCCccchhHHHHHHHHHHHhh-cCCCCCeEEEEeccCCCCcc-ccHHHHHHHHHcC--CcCeEEEEEecC
Q 010480 360 PIIMIGPGTGLAPFRGFLQERFALQEA-GAELGPSLLFFGCRNRKMDY-IYEDELNNFVQSG--ALSQLIVAFSRE 431 (509)
Q Consensus 360 pii~Ia~GtGIAP~~s~l~~~~~~~~~-~~~~~~~~L~~G~R~~~~d~-ly~~el~~~~~~~--~~~~~~~a~Sr~ 431 (509)
.++|||||+||||++++++++...... .....++.|+|.+|+.+ ++ .|.++|+++.... ...++.+.++++
T Consensus 3 ~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~-~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~ 77 (156)
T PF08030_consen 3 NVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDAD-ELEWFSPELNELLELDRLGNVEVHIYVTRE 77 (156)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TT-TTHHHHHHHHHHHHHHHHTSEEEEEEETT-
T ss_pred EEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchh-hhhhhhHHHHHHHHHhccccceEEEEEcCC
Confidence 489999999999999999999876541 23347899999999997 54 5776666554331 234667776664
No 85
>PRK05723 flavodoxin; Provisional
Probab=98.85 E-value=1.5e-09 Score=97.46 Aligned_cols=49 Identities=22% Similarity=0.289 Sum_probs=46.1
Q ss_pred ccccCCcchhHHHHHhhcCCeecccCcccCCC--CCchhhHHHHHHHHHHHHH
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPVGLGDDD--QCIEDDFSAWRELVWPELD 55 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~--~~~e~~f~~W~~~l~~~l~ 55 (509)
+||.|| |+||++|++|||+|++++|++|++ .++|++|++|++++|++|.
T Consensus 100 ~Fc~a~--~~ld~~L~~lGA~rv~~~~~~D~~~~~~~e~~~~~W~~~~~~~l~ 150 (151)
T PRK05723 100 TFCGGG--EQMRELFAELGVREVQPMLRLDASETVTPETDAEPWLAEFAAALK 150 (151)
T ss_pred HHhHHH--HHHHHHHHHCCCcEeeccEEeecCCCCChHHHHHHHHHHHHHHhc
Confidence 799999 999999999999999999999997 4799999999999999874
No 86
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.56 E-value=3.8e-07 Score=100.44 Aligned_cols=192 Identities=14% Similarity=0.271 Sum_probs=112.4
Q ss_pred hhhhHHhhcCC---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCC--cc-CC----CCcee
Q 010480 273 LGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPM--EK-SN----DCSWA 342 (509)
Q Consensus 273 ~~~~l~~~~p~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~--~~-~~----~~~~v 342 (509)
+||++-+-+|. ++.+||||+|+| +++.+.+.|+.. |..|.-|.+.... .+ .. ...++
T Consensus 384 ~Gqyifv~~p~ls~~qwHPFTItSsp--~dd~lsvhIk~~-----------g~wT~~L~~~~~~~~~~~~~~~~~~~~~i 450 (646)
T KOG0039|consen 384 PGQYIFVNCPSLSKLEWHPFTITSAP--EDDFLSVHIKAL-----------GDWTEKLRNAFSEVSQPPESDKSYPFPKI 450 (646)
T ss_pred CCCEEEEECccccccccCCceeecCC--CCCEEEEEEEec-----------CcHHHHHHHHHhhhcccccccccccCceE
Confidence 67876443454 578999999999 368999888765 6677777654331 00 00 02345
Q ss_pred eEEEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcC------------CCCCeEEEEeccCCCCcc-ccH
Q 010480 343 PIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGA------------ELGPSLLFFGCRNRKMDY-IYE 409 (509)
Q Consensus 343 ~v~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~------------~~~~~~L~~G~R~~~~d~-ly~ 409 (509)
.|.+|.|.=.-+-..-..++|||+|+|+|||.|.+++.+.....+. ..+++..+|-||... ++ .|.
T Consensus 451 ~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~-sf~wf~ 529 (646)
T KOG0039|consen 451 LIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQR-SFEWFK 529 (646)
T ss_pred EEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccccccccceecceeEEEEecccc-chHHHH
Confidence 5666655322111223457999999999999999999987544332 235678888888876 55 355
Q ss_pred HHHHHHHH---cCCcCeEEEEEecC----CC----------------Ccccch------hhHhhcHHHHHHHH---hCC-
Q 010480 410 DELNNFVQ---SGALSQLIVAFSRE----GP----------------TKEYVQ------HKMMEKSSDIWNML---SEG- 456 (509)
Q Consensus 410 ~el~~~~~---~~~~~~~~~a~Sr~----~~----------------~~~yvq------~~i~~~~~~v~~~l---~~~- 456 (509)
+.+.+... .+.. .++...+.. .. .+..++ +--+.+-+.+.+-+ .++
T Consensus 530 ~~l~~v~~~~~~~~~-e~~~~~t~~~~~~d~~~~~~~~~~~~~~~~~~~di~~g~~~~~~~gRPn~~~~~~~~~~~~~~~ 608 (646)
T KOG0039|consen 530 GLLTEVEEYDSSGVI-ELHNYVTSSYEEGDARSALIQMVQKLLHAKNGVDIVTGLKVETHFGRPNWKEVFKEIAKSHPNV 608 (646)
T ss_pred HHHHHHHHHHhcCCc-hhheehhHhHhhhhhhhHHHHHHHhhcccccCccccccceeeeeCCCCCHHHHHHHHHhhCCCc
Confidence 55555442 2222 233333210 00 001111 11122223333333 122
Q ss_pred -CEEEEecCCcchHHHHHHHHHHHH
Q 010480 457 -AYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 457 -~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
.-||.||| +.|.+.+++...+..
T Consensus 609 ~vgVf~CGp-~~l~~~~~~~~~~~~ 632 (646)
T KOG0039|consen 609 RVGVFSCGP-PGLVKELRKLCNDFS 632 (646)
T ss_pred eEEEEEeCC-HHHHHHHHHHHHhcc
Confidence 47999999 899999998877754
No 87
>PRK09004 FMN-binding protein MioC; Provisional
Probab=98.53 E-value=4.4e-08 Score=87.61 Aligned_cols=49 Identities=29% Similarity=0.118 Sum_probs=44.8
Q ss_pred cccccCCcchhHHHHHhhcCCeecccCcccCCCC--CchhhHHHHHHHHHHHH
Q 010480 4 FGFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPEL 54 (509)
Q Consensus 4 ~~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~--~~e~~f~~W~~~l~~~l 54 (509)
.+||+|+ |.+|++|+++||+|+.|+|++|++. +.|++|++|.+++|.+|
T Consensus 96 ~~fc~~~--~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~~~~~~ 146 (146)
T PRK09004 96 DTFCGAI--DKLEQLLKAKGAKQIGETLKIDVLQHPIPEDPAEEWLKSWINLL 146 (146)
T ss_pred HHHhHHH--HHHHHHHHHcCCeEeeccEEEeCCCCCCchhHHHHHHHHHHHhC
Confidence 4799999 8899999999999999999999964 58999999999999864
No 88
>PRK08105 flavodoxin; Provisional
Probab=98.48 E-value=8e-08 Score=86.23 Aligned_cols=49 Identities=31% Similarity=0.287 Sum_probs=44.4
Q ss_pred cccccCCcchhHHHHHhhcCCeecccCcccCCCC--CchhhHHHHHHHHHHHHH
Q 010480 4 FGFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPELD 55 (509)
Q Consensus 4 ~~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~--~~e~~f~~W~~~l~~~l~ 55 (509)
-+||.|+ |+||++|+++||+|++|+|++|++. ++|++|++|+++ |.++.
T Consensus 98 ~~fc~~~--~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~-~~~~~ 148 (149)
T PRK08105 98 DNFCGAG--KQFDALLQEQGAKRVGERLEIDACETPEPEVEANPWVEQ-WGTLL 148 (149)
T ss_pred HHHHHHH--HHHHHHHHHCCCeEeeccEeeeCCCCCChHHHHHHHHHH-HHHHh
Confidence 4799999 9999999999999999999999865 689999999999 87653
No 89
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.31 E-value=1.5e-06 Score=97.61 Aligned_cols=83 Identities=18% Similarity=0.169 Sum_probs=63.8
Q ss_pred CChhhhHHhhcC-----CC-CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeE
Q 010480 271 PPLGVFFAAIVP-----RL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPI 344 (509)
Q Consensus 271 ~~~~~~l~~~~p-----~~-~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v 344 (509)
.-+|||+.+-.+ .+ .||++||++.... .+.++|+|+++ |..|.+|+++.+|+. +.+
T Consensus 819 ~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e-~g~It~i~rvV-----------GkgT~~Ls~l~~Gd~------v~v 880 (1028)
T PRK06567 819 FKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVE-KGLISFIVFEV-----------GKSTSLCKTLSENEK------VVL 880 (1028)
T ss_pred CCCCceEEEEeCCCCCccccCceeEEeeccCCC-CCEEEEEEEEE-----------ChHHHHHhcCCCCCE------EEE
Confidence 348999965432 12 6679999998753 57899999887 999999999988754 567
Q ss_pred EEecC-CCCCCCCCCCCEEEEccCCccchh
Q 010480 345 FVRQS-NFKLPADAKVPIIMIGPGTGLAPF 373 (509)
Q Consensus 345 ~~~~g-~F~lp~~~~~pii~Ia~GtGIAP~ 373 (509)
.+|.| .|.++. .+.+++||||+|+||+
T Consensus 881 ~GPLG~pF~i~~--~k~vLLVgGGVGiApL 908 (1028)
T PRK06567 881 MGPTGSPLEIPQ--NKKIVIVDFEVGNIGL 908 (1028)
T ss_pred EcccCCCCCCCC--CCeEEEEEccccHHHH
Confidence 77755 587763 3579999999999983
No 90
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=97.93 E-value=3.5e-06 Score=69.97 Aligned_cols=67 Identities=24% Similarity=0.239 Sum_probs=51.4
Q ss_pred CCChhhhHHhhcCC---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEE
Q 010480 270 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 346 (509)
Q Consensus 270 ~~~~~~~l~~~~p~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~ 346 (509)
...+||++.+-++. ...|+|||+|.|. ..+.++|+|+.. .+|.+|+||+++.+|+ .+.+..
T Consensus 29 ~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~-~~~~~~~~ik~~---------~~G~~S~~L~~l~~Gd------~v~i~g 92 (99)
T PF00970_consen 29 DFKPGQFVSVRVPINGKQVSRPYSPASSPD-DKGYLEFAIKRY---------PNGRVSRYLHQLKPGD------EVEIRG 92 (99)
T ss_dssp SSTTT-EEEEEEEETTEEEEEEEEBCSSTT-SSSEEEEEEEEC---------TTSHHHHHHHTSCTTS------EEEEEE
T ss_pred ccCcceEEEEEEccCCcceecceeEeeecC-CCCcEEEEEEec---------cCCHHHHHHHhCCCCC------EEEEEE
Confidence 45789999776662 2359999999997 457899998754 4699999999876654 378888
Q ss_pred ecCCCC
Q 010480 347 RQSNFK 352 (509)
Q Consensus 347 ~~g~F~ 352 (509)
|.|.|.
T Consensus 93 P~G~f~ 98 (99)
T PF00970_consen 93 PYGNFT 98 (99)
T ss_dssp EESSEE
T ss_pred cccccC
Confidence 989885
No 91
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=95.70 E-value=0.1 Score=50.82 Aligned_cols=171 Identities=20% Similarity=0.329 Sum_probs=100.4
Q ss_pred CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecCCCCCCCCCCCCEEE
Q 010480 284 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 363 (509)
Q Consensus 284 ~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g~F~lp~~~~~pii~ 363 (509)
...|.|||.+-.. ..+++.+-+-++ ...|.+|+|-.+..+|+. +.|..|+|.+..++. ..-++|
T Consensus 85 ~~~R~YTiR~~d~-~~~e~~vDfVlH--------~~~gpas~WA~~a~~GD~------l~i~GP~g~~~p~~~-~~~~lL 148 (265)
T COG2375 85 PPQRTYTIRAVDA-AAGELDVDFVLH--------GEGGPASRWARTAQPGDT------LTIMGPRGSLVPPEA-ADWYLL 148 (265)
T ss_pred CCcccceeeeecc-cccEEEEEEEEc--------CCCCcchhhHhhCCCCCE------EEEeCCCCCCCCCCC-cceEEE
Confidence 3579999987543 234555444322 146999999999888764 567778888766543 456999
Q ss_pred EccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEecCCCC-cccchhhH
Q 010480 364 IGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT-KEYVQHKM 442 (509)
Q Consensus 364 Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~~-~~yvq~~i 442 (509)
||==|++--+.++|++.-.. .+...|.-..+.. |. .++ .....+ .+. .+.|++.. ..-++..+
T Consensus 149 igDetAlPAIa~iLE~lp~~-------~~~~a~lev~d~a-d~---~~l---~~~~~l-~~~-Wl~r~~~~~~~ll~~a~ 212 (265)
T COG2375 149 IGDETALPAIARILETLPAD-------TPAEAFLEVDDAA-DR---DEL---PSPDDL-ELE-WLARDDAPTEQLLAAAL 212 (265)
T ss_pred eccccchHHHHHHHHhCCCC-------CceEEEEEeCChH-Hh---hcc---CCCCce-eEE-EecCCCccchHHHHHHH
Confidence 99999998888998886431 3456777777765 54 222 112222 333 33443321 11122222
Q ss_pred hhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHH--HHHHHH
Q 010480 443 MEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSK--AESMVK 496 (509)
Q Consensus 443 ~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~--a~~~~~ 496 (509)
.+. .+-..+.++||.|= ..|++++++.|+ .+.|++... |.-|++
T Consensus 213 ~~~-----~~P~~~~~vwiagE-~~~v~~~Rk~L~----~e~g~dk~~i~a~gYW~ 258 (265)
T COG2375 213 AQA-----ALPAGDYYVWIAGE-ASAVKAIRKFLR----NERGFDKSRVRAIGYWR 258 (265)
T ss_pred hcc-----cCCCCceEEEEecc-HHHHHHHHHHHh----hhcCCCHHHhhhhhhhh
Confidence 211 11123479999997 677776666554 455666554 333443
No 92
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=95.43 E-value=0.0094 Score=60.79 Aligned_cols=47 Identities=23% Similarity=0.404 Sum_probs=40.7
Q ss_pred ccccCCcchhHHHHHhhcCCeecccCcccCCCCCchhhHHHHHHHHHHHHHh
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 56 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~~~e~~f~~W~~~l~~~l~~ 56 (509)
+||.-| |.+|+++..|||.|++|+|+||.+++ ..+.|...+.+.|+.
T Consensus 148 ~f~~~a--k~~d~wi~~LG~~r~~p~G~~~~~~~---~id~W~~~~~~~Lk~ 194 (601)
T KOG1160|consen 148 KFCYQA--KRADKWISRLGGRRIFPLGEVDMDSA---KIDEWTSLVAETLKD 194 (601)
T ss_pred HHHHHH--HhHHHHHHhhcCceeeecCccccccc---cHHHHHHHHHHHHcC
Confidence 699988 88999999999999999999998743 244999999888764
No 93
>KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism]
Probab=92.61 E-value=0.066 Score=55.35 Aligned_cols=53 Identities=28% Similarity=0.462 Sum_probs=47.6
Q ss_pred cccccCCcchhHHHHHhhcCCeecccCcccCCCC--CchhhHHHHHHHHHHHHHhhh
Q 010480 4 FGFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPELDNLL 58 (509)
Q Consensus 4 ~~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~--~~e~~f~~W~~~l~~~l~~~~ 58 (509)
++|.+-+ |.+..||.+|+|..+.++|+|+|++ +.+..+..|...||++|.+-.
T Consensus 16 ~~ftkp~--k~~l~r~~~l~a~a~vtlglg~d~d~~~p~ta~s~~~p~l~eal~~~~ 70 (638)
T KOG0560|consen 16 SYFTKPK--KSLLVRLAQLTAPALVTLGLGVDQDPDGPRTAYSDWEPILWEALGKGI 70 (638)
T ss_pred cccCCch--HHHHHHHHHhcCCceeeeccCCCCCCCCccccccccChHHHHHhcCCC
Confidence 5788888 9999999999999999999999965 889999999999999997543
No 94
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=92.33 E-value=0.17 Score=50.01 Aligned_cols=42 Identities=48% Similarity=0.850 Sum_probs=37.2
Q ss_pred EeeeeccCCCCCCCcEEEEEEEeCC-CCCccCCCCeeEEcccC
Q 010480 114 VAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCEN 155 (509)
Q Consensus 114 v~~~~~L~~~~~~~~~~~i~l~~~~-~~~~y~~GD~l~i~p~N 155 (509)
+++++++|+|++.+++++++|++++ ....|+||.++.|.+++
T Consensus 2 ~~~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~ 44 (267)
T cd06182 2 ITVNRKLTPPDSPRSTRHLEFDLSGNSVLKYQPGDHLGVIPPN 44 (267)
T ss_pred ccccccccCCCCCCceEEEEEecCCCCcCccCCCCEEEEecCC
Confidence 4678999999999999999999875 67899999999998764
No 95
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=88.58 E-value=0.33 Score=42.71 Aligned_cols=27 Identities=30% Similarity=0.201 Sum_probs=25.8
Q ss_pred cchhHHHHHhhcCCeecccCcccCCCC
Q 010480 11 INESLFSLLPFAGAKRLVPVGLGDDDQ 37 (509)
Q Consensus 11 ~~k~ld~rL~~LGA~r~~~~g~gDd~~ 37 (509)
.+|+|+++|+++||+++.|++++|+..
T Consensus 106 ~~k~l~~~l~~~G~~~~~~~~~~d~~~ 132 (143)
T PF00258_consen 106 AAKKLDERLEELGAKRVGPLLEIDEAP 132 (143)
T ss_dssp HHHHHHHHHHHTTEEEESSSEEEETTT
T ss_pred HHHHHHHHHHHCCCEEEECcEEEecCC
Confidence 689999999999999999999999987
No 96
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=82.42 E-value=2.8 Score=42.22 Aligned_cols=49 Identities=16% Similarity=0.308 Sum_probs=41.7
Q ss_pred CCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccC
Q 010480 106 AQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCEN 155 (509)
Q Consensus 106 ~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N 155 (509)
...++.++|+..+.++.|.+..++++|.|+.+ ..+.|+||.++.|.++.
T Consensus 21 ~~~~~~~~V~~i~~~~~p~~~~~v~~l~l~~~-~~~~f~aGQy~~l~~~~ 69 (307)
T PLN03116 21 PKAPYTATIVSVERIVGPKAPGETCHIVIDHG-GNVPYWEGQSYGVIPPG 69 (307)
T ss_pred CCCCEEEEEEeeEEcccCCCCCceEEEEEecC-CCCceecCceEeeeCCC
Confidence 45677899999999998877788999999976 56899999999998763
No 97
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=80.14 E-value=3.9 Score=40.69 Aligned_cols=48 Identities=21% Similarity=0.380 Sum_probs=40.3
Q ss_pred CCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEccc
Q 010480 106 AQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCE 154 (509)
Q Consensus 106 ~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~ 154 (509)
.++++.++|+..+.++.++...+++++.|+.+ ..+.|+||.++.|.++
T Consensus 5 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~pGQ~v~l~~~ 52 (286)
T cd06208 5 PKNPLIGKVVSNTRLTGPDAPGEVCHIVIDHG-GKLPYLEGQSIGIIPP 52 (286)
T ss_pred CCCCeEEEEEeceeccCCCCCcceEEEEEeCC-CcccccCCceEEEECC
Confidence 35677899999999997766678999999974 5789999999999865
No 98
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=79.82 E-value=0.57 Score=39.14 Aligned_cols=50 Identities=22% Similarity=0.231 Sum_probs=0.0
Q ss_pred CCCChhhhHHhhcCCC-----CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcC
Q 010480 269 AKPPLGVFFAAIVPRL-----QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSL 331 (509)
Q Consensus 269 ~~~~~~~~l~~~~p~~-----~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~ 331 (509)
.+..+||++-+.+|.+ +.++|||+|+|. ++.+.|+|+.. |..|..|.+..
T Consensus 28 ~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~--~~~i~l~ik~~-----------g~~T~~L~~~~ 82 (105)
T PF08022_consen 28 FKWKPGQYVFLSFPSISKWFWQWHPFTIASSPE--DNSITLIIKAR-----------GGWTKRLYEHL 82 (105)
T ss_dssp --------------------------------------------------------------------
T ss_pred CCCCCceEEEEEEcCcCcCcccccccEeeccCC--CCEEEEEEEeC-----------CCchHHHHHHH
Confidence 4566888876666754 578999999997 57888887643 66677777654
No 99
>PRK07308 flavodoxin; Validated
Probab=77.86 E-value=1.5 Score=38.87 Aligned_cols=31 Identities=13% Similarity=-0.016 Sum_probs=26.2
Q ss_pred cccccCCcchhHHHHHhhcCCeecccCcccCCC
Q 010480 4 FGFLSAGINESLFSLLPFAGAKRLVPVGLGDDD 36 (509)
Q Consensus 4 ~~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~ 36 (509)
-+||.|+ |.++++|.++||+++.+...-|-.
T Consensus 96 ~~~~~a~--~~~~~~l~~~g~~~~~~~~~~~~~ 126 (146)
T PRK07308 96 DYFCKSV--DDFEAQFALTGATKGAESVKVDLA 126 (146)
T ss_pred HHHHHHH--HHHHHHHHHcCCeEccCcEEEeCC
Confidence 3699999 899999999999999987765543
No 100
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=69.98 E-value=3 Score=35.62 Aligned_cols=53 Identities=15% Similarity=0.293 Sum_probs=27.3
Q ss_pred CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecCCC
Q 010480 284 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNF 351 (509)
Q Consensus 284 ~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g~F 351 (509)
...|.|||.+.... .+++.|-|.++ -..|.+|.|..+..+|+. +-|..++|.|
T Consensus 65 p~~R~YTvR~~d~~-~~~l~iDfv~H--------g~~Gpas~WA~~A~pGd~------v~v~gP~g~~ 117 (117)
T PF08021_consen 65 PVMRTYTVRRFDPE-TGELDIDFVLH--------GDEGPASRWARSARPGDR------VGVTGPRGSF 117 (117)
T ss_dssp -EEEEEE--EEETT---EEEEEEE----------SS--HHHHHHHH--TT-E------EEEEEEE---
T ss_pred CCCCCcCEeeEcCC-CCEEEEEEEEC--------CCCCchHHHHhhCCCCCE------EEEeCCCCCC
Confidence 35799999887442 35666555433 112889999999888764 6677787776
No 101
>PRK06703 flavodoxin; Provisional
Probab=69.96 E-value=4.9 Score=35.68 Aligned_cols=49 Identities=12% Similarity=-0.149 Sum_probs=33.8
Q ss_pred ccccCCcchhHHHHHhhcCCeecccCcccCCCC---CchhhHHHHHHHHHHHHH
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQ---CIEDDFSAWRELVWPELD 55 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~---~~e~~f~~W~~~l~~~l~ 55 (509)
+||.|+ +.++++|+++||+.+.+...-+-.- .-......|-++|-..++
T Consensus 97 ~~~~a~--~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 97 LFCEAV--TIFEERLVERGAELVQEGLKIELAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred HHHHHH--HHHHHHHHHCCCEEcccCeEEecCCCchhHHHHHHHHHHHHHHHHH
Confidence 489888 8899999999999887654333222 223346678777766544
No 102
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=61.77 E-value=7.5 Score=34.59 Aligned_cols=47 Identities=21% Similarity=0.231 Sum_probs=37.0
Q ss_pred ccccCCcchhHHHHHhhcC--CeecccCccc--CC--CCCchhhHHHHHHHHHHH
Q 010480 5 GFLSAGINESLFSLLPFAG--AKRLVPVGLG--DD--DQCIEDDFSAWRELVWPE 53 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LG--A~r~~~~g~g--Dd--~~~~e~~f~~W~~~l~~~ 53 (509)
.||.|+ ..+..+|+..| +..+.+.--. |+ ....+...++|.++++..
T Consensus 98 ~fc~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~w~~~~~~~ 150 (151)
T COG0716 98 YFCEAG--GNFEDILEEKGAKAVGILETLGYIFDASPNEEDEKRIKEWVKQILNE 150 (151)
T ss_pred HHHHHH--HHHHHHHHHcCccccccccccceeccCCCCCccHHHHHHHHHHHHhh
Confidence 499998 77999999999 7777776555 33 246777899999988764
No 103
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=59.98 E-value=24 Score=28.46 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=29.1
Q ss_pred EEEeeeeccCCCCCCCcEEEEEEEeCC--CCCccCCCCeeEEccc
Q 010480 112 SNVAVRKELHTPSSDRSCTHLEFDIAG--TGLTYETGDHVGVYCE 154 (509)
Q Consensus 112 a~v~~~~~L~~~~~~~~~~~i~l~~~~--~~~~y~~GD~l~i~p~ 154 (509)
|+|++.++++. ++++++|.+++ ....|.||.++.|.-+
T Consensus 2 ~~v~~~~~~s~-----~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~ 41 (99)
T PF00970_consen 2 AKVVEIEELSP-----DVKIFRFKLPDPDQKLDFKPGQFVSVRVP 41 (99)
T ss_dssp EEEEEEEEESS-----SEEEEEEEESSTTTT-SSTTT-EEEEEEE
T ss_pred EEEEEEEEeCC-----CeEEEEEEECCCCcccccCcceEEEEEEc
Confidence 67888888874 78899998874 2468999999999766
No 104
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=57.60 E-value=7.4 Score=33.65 Aligned_cols=24 Identities=25% Similarity=0.068 Sum_probs=19.9
Q ss_pred cccCCcchhHHHHHhhcCCeecccCc
Q 010480 6 FLSAGINESLFSLLPFAGAKRLVPVG 31 (509)
Q Consensus 6 f~~a~~~k~ld~rL~~LGA~r~~~~g 31 (509)
||.|+ +.++++|+++|++++.+..
T Consensus 95 f~~~~--~~~~~~l~~~g~~~v~~~~ 118 (140)
T TIGR01753 95 FCEAV--DDWEERLKEAGATIIAEGL 118 (140)
T ss_pred hhHHH--HHHHHHHHHCCCEEecCCe
Confidence 67777 8899999999999988743
No 105
>PRK09271 flavodoxin; Provisional
Probab=56.14 E-value=8.6 Score=34.61 Aligned_cols=43 Identities=9% Similarity=0.011 Sum_probs=29.0
Q ss_pred ccccCCcchhHHHHHhhcCCeecccCcccCCC---CCchhhHHHHHHHHHHHH
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPVGLGDDD---QCIEDDFSAWRELVWPEL 54 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~---~~~e~~f~~W~~~l~~~l 54 (509)
+||.|+ +.++.+|..++ |.-..+-. ..-.+.+.+|..++++++
T Consensus 102 ~f~~a~--~~~~~~l~~~~-----~~l~~~~~p~~~~d~~~~~~~~~~~~~~~ 147 (160)
T PRK09271 102 YYCGAV--HRMARFFGSSY-----PRLKIEQMPHGERDAAAIDNWTDKVLALC 147 (160)
T ss_pred HHHHHH--HHHHHHHhccC-----CceeeecCCccchhHHHHHHHHHHHHHHh
Confidence 799999 99999998642 22212211 111367899999999988
No 106
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=51.94 E-value=25 Score=34.03 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=28.7
Q ss_pred eccCCCCCC-CcEEEEEEEeCCCCCccCCCCeeEEcccC
Q 010480 118 KELHTPSSD-RSCTHLEFDIAGTGLTYETGDHVGVYCEN 155 (509)
Q Consensus 118 ~~L~~~~~~-~~~~~i~l~~~~~~~~y~~GD~l~i~p~N 155 (509)
+.++++++. ..+++|+|+.++....|+||.++.|.+++
T Consensus 6 ~~~~~~~~~~~~v~~l~l~~~~~~~~f~pGQ~v~l~~~~ 44 (245)
T cd06200 6 RVLLNPGSQGAPLWRLRLTPPDAGAQWQAGDIAEIGPRH 44 (245)
T ss_pred eeecCCCCCCCceEEEEEecCCCCCCccCCcEEEecCCC
Confidence 335555554 37999999986556899999999998764
No 107
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=46.36 E-value=39 Score=32.02 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=31.1
Q ss_pred eEEEeeeeccCCCCCCCcEEEEEEEeCC-CCCccCCCCeeEEcccC
Q 010480 111 RSNVAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCEN 155 (509)
Q Consensus 111 ~a~v~~~~~L~~~~~~~~~~~i~l~~~~-~~~~y~~GD~l~i~p~N 155 (509)
.++|++.+.++. ++.++.|+++. ..+.|+||.++.|..++
T Consensus 2 ~~~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 42 (232)
T cd06212 2 VGTVVAVEALTH-----DIRRLRLRLEEPEPIKFFAGQYVDITVPG 42 (232)
T ss_pred ceEEEEEeecCC-----CeEEEEEEcCCCCcCCcCCCCeEEEEcCC
Confidence 578888888875 57888888754 35789999999998653
No 108
>PF11798 IMS_HHH: IMS family HHH motif; InterPro: IPR024728 This helix-hairpin-helix motif is found in proteins belonging to the type-Y family of DNA polymerases []. This type of polymerases are thought to be involved in UV protection and mutation [, ]. ; PDB: 3PZP_B 2OH2_B 2W7O_B 3IN5_B 1T94_A 2W7P_B 2W8K_A 2AGQ_A 1RYR_A 3RAX_A ....
Probab=42.84 E-value=16 Score=23.29 Aligned_cols=14 Identities=29% Similarity=0.285 Sum_probs=11.8
Q ss_pred CcchhHHHHHhhcC
Q 010480 10 GINESLFSLLPFAG 23 (509)
Q Consensus 10 ~~~k~ld~rL~~LG 23 (509)
||+++..++|.++|
T Consensus 18 GIG~kt~~kL~~~G 31 (32)
T PF11798_consen 18 GIGKKTAKKLNKLG 31 (32)
T ss_dssp TS-HHHHHHHHCTT
T ss_pred CccHHHHHHHHHcc
Confidence 66699999999998
No 109
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=40.14 E-value=9.1 Score=33.09 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=28.4
Q ss_pred cccccCCcchhHHHHHhhcCCeecccCcccCCCCCchhhHHHHHHHHHH
Q 010480 4 FGFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWP 52 (509)
Q Consensus 4 ~~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~~~e~~f~~W~~~l~~ 52 (509)
-+||.|| +++.+++...-.-+|=-.|.-.|..-+...|..|.+++|.
T Consensus 78 ~~fc~A~--d~ia~~~~~p~l~k~El~gt~~Dv~~~~~~~~~~~~~~~~ 124 (125)
T TIGR00333 78 DNFALAG--DVISRKLNVPLLYKFELSGTKNDVELFTQEVQKIVTNFFQ 124 (125)
T ss_pred HHHHHHH--HHHHHHhCCccEEEEecCCCHHHHHHHHHHHHHHHHHHhc
Confidence 3699999 9999999873333332222111222344567788877774
No 110
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=39.47 E-value=19 Score=31.41 Aligned_cols=16 Identities=13% Similarity=0.073 Sum_probs=8.7
Q ss_pred ccccCCcchhHHHHHhhc
Q 010480 5 GFLSAGINESLFSLLPFA 22 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~L 22 (509)
+||.|+ ++++++|+++
T Consensus 98 ~f~~a~--~~~~~~l~~~ 113 (140)
T TIGR01754 98 LYCGAV--DRLAHFFGSS 113 (140)
T ss_pred hHhHHH--HHHHHHHcCc
Confidence 455555 5555555444
No 111
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=38.66 E-value=56 Score=30.92 Aligned_cols=40 Identities=10% Similarity=0.109 Sum_probs=30.8
Q ss_pred eEEEeeeeccCCCCCCCcEEEEEEEeCCCC-CccCCCCeeEEcccC
Q 010480 111 RSNVAVRKELHTPSSDRSCTHLEFDIAGTG-LTYETGDHVGVYCEN 155 (509)
Q Consensus 111 ~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~-~~y~~GD~l~i~p~N 155 (509)
.++|+.++.++. +++.+.|+.++.. ..|+||.++.|..++
T Consensus 3 ~~~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 43 (235)
T cd06217 3 VLRVTEIIQETP-----TVKTFRLAVPDGVPPPFLAGQHVDLRLTA 43 (235)
T ss_pred eEEEEEEEecCC-----CeEEEEEECCCCCcCCcCCcCeEEEEEec
Confidence 467888888864 6788888876432 789999999998654
No 112
>PF11132 SplA: Transcriptional regulator protein (SplA); InterPro: IPR022608 The SplA protein functions in trans as a negative regulator of the level of splB-lacZ expression in the developing forespore [].
Probab=37.23 E-value=23 Score=27.18 Aligned_cols=16 Identities=38% Similarity=0.445 Sum_probs=14.9
Q ss_pred ccCCCCeeEEcccCCH
Q 010480 142 TYETGDHVGVYCENLS 157 (509)
Q Consensus 142 ~y~~GD~l~i~p~N~~ 157 (509)
.|++||.+.|..+|+-
T Consensus 5 ~~~~GD~VyViYrNPH 20 (75)
T PF11132_consen 5 PYHAGDIVYVIYRNPH 20 (75)
T ss_pred ccCCCCEEEEEEcCCC
Confidence 6999999999999986
No 113
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=34.56 E-value=65 Score=30.12 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=30.7
Q ss_pred eEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCC
Q 010480 111 RSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENL 156 (509)
Q Consensus 111 ~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~ 156 (509)
+++|+..+.++. +++++.|+.++ .+.|+||.++.|.-+++
T Consensus 2 ~~~v~~~~~~~~-----~~~~~~l~~~~-~~~~~pGQ~v~l~~~~~ 41 (218)
T cd06196 2 TVTLLSIEPVTH-----DVKRLRFDKPE-GYDFTPGQATEVAIDKP 41 (218)
T ss_pred ceEEEEEEEcCC-----CeEEEEEcCCC-cCCCCCCCEEEEEeeCC
Confidence 457778888864 68899988754 57899999999975543
No 114
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=33.51 E-value=88 Score=29.50 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=31.7
Q ss_pred eeEEEeeeeccCCCCCCCcEEEEEEEeCC-CCCccCCCCeeEEcccC
Q 010480 110 CRSNVAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCEN 155 (509)
Q Consensus 110 ~~a~v~~~~~L~~~~~~~~~~~i~l~~~~-~~~~y~~GD~l~i~p~N 155 (509)
+.++|+..+.++. +++.|.|+.++ ....|+||.++.|..++
T Consensus 2 ~~~~V~~~~~~t~-----~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~ 43 (228)
T cd06209 2 FEATVTEVERLSD-----STIGLTLELDEAGALAFLPGQYVNLQVPG 43 (228)
T ss_pred eeEEEEEEEEcCC-----CeEEEEEEcCCCCcCccCCCCEEEEEeCC
Confidence 3578888888874 68888888764 35789999999998653
No 115
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=33.35 E-value=1.1e+02 Score=29.36 Aligned_cols=42 Identities=14% Similarity=0.016 Sum_probs=31.8
Q ss_pred eeEEEeeeeccCCCCCCCcEEEEEEEeCCC-C-CccCCCCeeEEcccCC
Q 010480 110 CRSNVAVRKELHTPSSDRSCTHLEFDIAGT-G-LTYETGDHVGVYCENL 156 (509)
Q Consensus 110 ~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~-~-~~y~~GD~l~i~p~N~ 156 (509)
..++|++...++. ++.+|+|+.++. . ..|+||+++.|.-.++
T Consensus 7 ~~~~v~~~~~~s~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~ 50 (247)
T cd06184 7 RPFVVARKVAESE-----DITSFYLEPADGGPLPPFLPGQYLSVRVKLP 50 (247)
T ss_pred EEEEEEEEEEcCC-----CeEEEEEEeCCCCcCCCCCCCCEEEEEEecC
Confidence 3567888888864 688999987643 2 6899999999986553
No 116
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=33.09 E-value=91 Score=29.68 Aligned_cols=42 Identities=10% Similarity=0.249 Sum_probs=32.5
Q ss_pred CeeEEEeeeeccCCCCCCCcEEEEEEEeCCCC-CccCCCCeeEEcccC
Q 010480 109 PCRSNVAVRKELHTPSSDRSCTHLEFDIAGTG-LTYETGDHVGVYCEN 155 (509)
Q Consensus 109 ~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~-~~y~~GD~l~i~p~N 155 (509)
++.++|+..+.++. +++.+.|..+... ..|+||.++.|..++
T Consensus 6 ~~~~~v~~~~~~t~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 48 (238)
T cd06211 6 DFEGTVVEIEDLTP-----TIKGVRLKLDEPEEIEFQAGQYVNLQAPG 48 (238)
T ss_pred EEeEEEEEEEecCC-----CEEEEEEEcCCCCcCccCCCCeEEEEcCC
Confidence 45688888888874 6788888876432 589999999998653
No 117
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=32.45 E-value=87 Score=30.20 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=31.9
Q ss_pred eeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCC
Q 010480 110 CRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENL 156 (509)
Q Consensus 110 ~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~ 156 (509)
..++|+..++++. +++.++|+.+ ....|+||.++.|..++.
T Consensus 5 ~~~~V~~~~~~t~-----d~~~l~l~~~-~~~~~~pGQ~v~l~~~~~ 45 (250)
T PRK00054 5 ENMKIVENKEIAP-----NIYTLVLDGE-KVFDMKPGQFVMVWVPGV 45 (250)
T ss_pred eEEEEEEEEEecC-----CeEEEEEeCc-cccCCCCCcEEEEEeCCC
Confidence 4578888888874 6788888844 567899999999986653
No 118
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=32.41 E-value=40 Score=28.06 Aligned_cols=38 Identities=16% Similarity=0.283 Sum_probs=28.2
Q ss_pred cchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Q 010480 466 KSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGR 503 (509)
Q Consensus 466 ~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R 503 (509)
.+|...=.+-|.+-+++.|.++.++|.+|+.+|.++.+
T Consensus 19 ~a~~~ek~~klvDelVkkGeln~eEak~~vddl~~q~k 56 (108)
T COG3937 19 AAETAEKVQKLVDELVKKGELNAEEAKRFVDDLLRQAK 56 (108)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 44544444555556678899999999999999987654
No 119
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=32.05 E-value=89 Score=29.45 Aligned_cols=39 Identities=13% Similarity=0.317 Sum_probs=30.5
Q ss_pred eEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccC
Q 010480 111 RSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCEN 155 (509)
Q Consensus 111 ~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N 155 (509)
+++|+..+.++. +++.+.|..+ ....|+||.++.|..+.
T Consensus 2 ~~~v~~~~~~t~-----~~~~~~l~~~-~~~~~~pGQ~~~l~~~~ 40 (227)
T cd06213 2 RGTIVAQERLTH-----DIVRLTVQLD-RPIAYKAGQYAELTLPG 40 (227)
T ss_pred eEEEEEEeecCC-----CEEEEEEecC-CCCCcCCCCEEEEEeCC
Confidence 467888888874 6788888764 35789999999998653
No 120
>PRK06756 flavodoxin; Provisional
Probab=31.01 E-value=39 Score=29.69 Aligned_cols=39 Identities=15% Similarity=-0.002 Sum_probs=24.8
Q ss_pred ccccCCcchhHHHHHhhcCCeecccCcccCCCCCchhhHHHH
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAW 46 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~~~e~~f~~W 46 (509)
+||.|. +.|.++|.++|++.+.+.-.-+ ...-|++++.|
T Consensus 98 ~~~~a~--~~l~~~l~~~g~~~v~~~~~~~-~~p~~~d~~~~ 136 (148)
T PRK06756 98 KYGVAV--DILIEKLQERGAAVVLEGLKVE-LTPEDEDVEKC 136 (148)
T ss_pred HHHHHH--HHHHHHHHHCCCEEcCCCeEEe-cCCCHHHHHHH
Confidence 477777 7888899889988887643222 22235555443
No 121
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=30.11 E-value=1.3e+02 Score=25.40 Aligned_cols=98 Identities=20% Similarity=0.328 Sum_probs=54.8
Q ss_pred CEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEecCCC--Cccc
Q 010480 360 PIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP--TKEY 437 (509)
Q Consensus 360 pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~--~~~y 437 (509)
.++|+|=-|++--+.++|+++-. ..+..+|+-..+.. |..+ |.. ....+++. +.|+.. ...-
T Consensus 3 ~~ll~gDeTalPAi~~iLe~lp~-------~~~~~v~iev~~~~-d~~~---l~~----~~~~~v~w-v~r~~~~~~~~~ 66 (119)
T PF04954_consen 3 RYLLVGDETALPAIARILEALPA-------DAPGTVFIEVPDEA-DRQP---LPA----PAGVEVTW-VPRDGPAAQGSA 66 (119)
T ss_dssp EEEEEEEGGGHHHHHHHHHHS-T-------T-EEEEEEEESSGG-G--------------TEEEEEE-EE-SS--TT-HH
T ss_pred eEEEEeccccHHHHHHHHHhCCC-------CCeEEEEEEECChH-hccc---CCC----CCCCEEEE-EeCCCCCchHHH
Confidence 47899999999999999998732 25677777777765 5332 222 22223433 344432 1122
Q ss_pred chhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 010480 438 VQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 479 (509)
Q Consensus 438 vq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i 479 (509)
+.+.+... .....+..+|++|- ..|++.+++.|++-
T Consensus 67 l~~al~~~-----~~~~~~~~vW~AgE-~~~~r~lR~~l~~~ 102 (119)
T PF04954_consen 67 LADALRDL-----PLPAGDGYVWVAGE-ASAVRALRRHLREE 102 (119)
T ss_dssp HHHHHTTS--------SS-EEEEEEEE-HHHHHHHHHHHHHH
T ss_pred HHHHHHHh-----hccCCCeEEEEEec-HHHHHHHHHHHHHh
Confidence 22222221 01135789999997 78999999888743
No 122
>KOG3363 consensus Uncharacterized conserved nuclear protein [Function unknown]
Probab=29.47 E-value=75 Score=28.61 Aligned_cols=48 Identities=23% Similarity=0.386 Sum_probs=32.1
Q ss_pred EEEEecCCcchH----HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEE
Q 010480 458 YLYVCGDAKSMA----RDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLR 506 (509)
Q Consensus 458 ~iyvCGp~~~M~----~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~ 506 (509)
.|.=||. ..=. ..|++-+++...+-.-++.|.|.+.+.=|..+|||+.
T Consensus 115 LIvG~Gd-~~~p~~v~~~V~~F~k~~ki~lEi~dte~A~aTfNfLNaEgR~Va 166 (196)
T KOG3363|consen 115 LIVGCGD-KKHPDKVRPSVRQFVKSHKIKLEIVDTENAAATFNFLNAEGRYVA 166 (196)
T ss_pred EEEecCC-cCCchhcCHHHHHHHHHhCcceEEecchhhhhHhhhccccccEEE
Confidence 3445886 4444 4455555554444344788899999999999999984
No 123
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=28.83 E-value=1.2e+02 Score=22.61 Aligned_cols=23 Identities=22% Similarity=0.249 Sum_probs=19.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCeEE
Q 010480 484 GSLDSSKAESMVKNLQMTGRYLR 506 (509)
Q Consensus 484 ~~~~~~~a~~~~~~l~~~~Ry~~ 506 (509)
-+++...|..||..|+++|+...
T Consensus 25 ~gls~~~aR~yL~~Le~eG~V~~ 47 (62)
T PF04703_consen 25 LGLSIYQARYYLEKLEKEGKVER 47 (62)
T ss_dssp HTS-HHHHHHHHHHHHHCTSEEE
T ss_pred hCCCHHHHHHHHHHHHHCCCEEE
Confidence 47889999999999999998653
No 124
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=28.63 E-value=70 Score=30.42 Aligned_cols=39 Identities=15% Similarity=0.229 Sum_probs=29.6
Q ss_pred eEEEeeeeccCCCCCCCcEEEEEEEeCCCC---CccCCCCeeEEccc
Q 010480 111 RSNVAVRKELHTPSSDRSCTHLEFDIAGTG---LTYETGDHVGVYCE 154 (509)
Q Consensus 111 ~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~---~~y~~GD~l~i~p~ 154 (509)
.++|+..+.++. +++.+.|..+... ..|+||.++.|.++
T Consensus 3 ~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~ 44 (241)
T cd06214 3 PLTVAEVVRETA-----DAVSITFDVPEELRDAFRYRPGQFLTLRVP 44 (241)
T ss_pred eEEEEEEEecCC-----CeEEEEEecCcccCCCCCcCCCCeEEEEee
Confidence 457778887763 6788888876432 58999999999976
No 125
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=28.48 E-value=58 Score=29.39 Aligned_cols=24 Identities=21% Similarity=0.119 Sum_probs=21.1
Q ss_pred ccccCCcchhHHHHHhhcCCeecccC
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPV 30 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~ 30 (509)
+||.|. +.|+++|+++||+.+-..
T Consensus 95 ~f~~a~--~~l~~~l~~~G~~~ig~~ 118 (167)
T TIGR01752 95 TFCDGM--GILYDKIKARGAKVVGFW 118 (167)
T ss_pred HHHHHH--HHHHHHHHHcCCeEEcee
Confidence 689888 889999999999987764
No 126
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=28.12 E-value=73 Score=23.70 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=20.9
Q ss_pred CCCCCccCCCCeeEEcccCCHHHHHHHHHHhC
Q 010480 137 AGTGLTYETGDHVGVYCENLSETVEEALSLLG 168 (509)
Q Consensus 137 ~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~ 168 (509)
+..+...++||.|.|... ++.++++.+.||
T Consensus 42 p~~~~~l~~gD~l~v~g~--~~~i~~~~~~~g 71 (71)
T PF02080_consen 42 PDGDTVLQAGDILIVVGD--PEDIERFRELFG 71 (71)
T ss_dssp --TT-BE-TTEEEEEEEE--HHHHHHHHHHT-
T ss_pred CCCCCEECCCCEEEEEEC--HHHHHHHHHhhC
Confidence 345778999999999887 666888888776
No 127
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=26.50 E-value=1.1e+02 Score=28.83 Aligned_cols=37 Identities=11% Similarity=0.240 Sum_probs=28.5
Q ss_pred EEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccC
Q 010480 113 NVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCEN 155 (509)
Q Consensus 113 ~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N 155 (509)
+|+..+.++. ++++++|..++ ...|+||.++.|..++
T Consensus 2 ~v~~~~~~t~-----~~~~l~l~~~~-~~~~~pGQ~v~l~~~~ 38 (224)
T cd06189 2 KVESIEPLND-----DVYRVRLKPPA-PLDFLAGQYLDLLLDD 38 (224)
T ss_pred EEEEEEeCCC-----ceEEEEEecCC-CcccCCCCEEEEEcCC
Confidence 4566666653 68899988764 6889999999999754
No 128
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=26.33 E-value=1.1e+02 Score=30.04 Aligned_cols=41 Identities=7% Similarity=0.074 Sum_probs=33.5
Q ss_pred EEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 010480 459 LYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQ 499 (509)
Q Consensus 459 iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~ 499 (509)
.=++|+.|++.-.+.++|.+...+.+|++.++|.+++.++.
T Consensus 169 tal~gsgPA~~~~~~~al~~a~~~~ggl~~~~a~~l~~~~~ 209 (277)
T PRK06928 169 SNLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFLNFAL 209 (277)
T ss_pred eeeecCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 33556556899999999999998888999999999887643
No 129
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=26.04 E-value=1.4e+02 Score=30.30 Aligned_cols=42 Identities=14% Similarity=0.239 Sum_probs=33.1
Q ss_pred CeeEEEeeeeccCCCCCCCcEEEEEEEeCC-CCCccCCCCeeEEcccC
Q 010480 109 PCRSNVAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCEN 155 (509)
Q Consensus 109 ~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~-~~~~y~~GD~l~i~p~N 155 (509)
.+.++|++.+.++. +++.++|+.++ ..+.|+||.++.|..++
T Consensus 102 ~~~~~V~~~~~~~~-----d~~~l~l~~~~~~~~~~~pGQfv~l~~~~ 144 (339)
T PRK07609 102 KLPCRVASLERVAG-----DVMRLKLRLPATERLQYLAGQYIEFILKD 144 (339)
T ss_pred EEEEEEEEEEcCCC-----cEEEEEEEcCCCCCCccCCCCeEEEECCC
Confidence 35678888888864 68899998763 35789999999998764
No 130
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=25.91 E-value=99 Score=28.14 Aligned_cols=26 Identities=15% Similarity=0.348 Sum_probs=18.2
Q ss_pred hhHhhcHHHHHHHHhCCCEEEEecCC
Q 010480 440 HKMMEKSSDIWNMLSEGAYLYVCGDA 465 (509)
Q Consensus 440 ~~i~~~~~~v~~~l~~~~~iyvCGp~ 465 (509)
+.+......+.+.+..+..|.+||..
T Consensus 25 ~~I~~aa~~i~~~l~~G~Kvl~cGNG 50 (176)
T COG0279 25 EAIERAAQLLVQSLLNGNKVLACGNG 50 (176)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 33444455566666789999999983
No 131
>COG5653 Protein involved in cellulose biosynthesis (CelD) [Cell envelope biogenesis, outer membrane]
Probab=25.50 E-value=48 Score=34.37 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=32.5
Q ss_pred hhHHHHHhhcCCeecccCcccCCCCCchhhHHHHHHHHH
Q 010480 13 ESLFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVW 51 (509)
Q Consensus 13 k~ld~rL~~LGA~r~~~~g~gDd~~~~e~~f~~W~~~l~ 51 (509)
++.++||++.|+.++......|+-..+...|..|+..=+
T Consensus 203 r~~~Rr~~evG~~r~v~a~s~d~~e~~~~~l~~~Kr~rf 241 (406)
T COG5653 203 RKLERRFEEVGAVRFVAARSPDEVEALFATLFRWKRLRF 241 (406)
T ss_pred HHHHHHHhhcCCeeEEecCCCchHHHHHHHHHHHHHHHH
Confidence 357889999999999999998887778888889986433
No 132
>PRK08051 fre FMN reductase; Validated
Probab=24.47 E-value=1.5e+02 Score=28.10 Aligned_cols=38 Identities=8% Similarity=0.146 Sum_probs=29.8
Q ss_pred eeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcc
Q 010480 110 CRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYC 153 (509)
Q Consensus 110 ~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p 153 (509)
+.++|++.+.++. ++++|.|..+ ....|+||.++.|..
T Consensus 3 ~~~~v~~i~~~~~-----~~~~l~l~~~-~~~~~~pGQ~v~l~~ 40 (232)
T PRK08051 3 LSCKVTSVEAITD-----TVYRVRLVPE-APFSFRAGQYLMVVM 40 (232)
T ss_pred eEEEEEEEecCCC-----CeEEEEEecC-CCCccCCCCEEEEEc
Confidence 4578888887764 6788888765 467999999999984
No 133
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=23.83 E-value=1.4e+02 Score=28.44 Aligned_cols=40 Identities=18% Similarity=0.123 Sum_probs=30.5
Q ss_pred eeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEccc
Q 010480 110 CRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCE 154 (509)
Q Consensus 110 ~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~ 154 (509)
+.++|+....++. ++.+|+|+.++....|+||.++.|..+
T Consensus 18 ~~~~v~~i~~~~~-----~~~~i~l~~~~~~~~~~pGQ~i~l~~~ 57 (243)
T cd06216 18 LRARVVAVRPETA-----DMVTLTLRPNRGWPGHRAGQHVRLGVE 57 (243)
T ss_pred eEEEEEEEEEcCC-----CcEEEEEecCCCCCCcCCCceEEEEEE
Confidence 4678888887764 678888886544458999999999854
No 134
>PF06753 Bradykinin: Bradykinin; InterPro: IPR009608 This family consists of several bradykinin sequences. The skins of anuran amphibians, in addition to mucus glands, contain highly specialised poison glands, which, in reaction to stress or attack, exude a complex noxious cocktail of biologically active molecules. These secretions often contain a plethora of peptides among which bradykinin or structural variants have been identified [].; GO: 0005179 hormone activity, 0006950 response to stress, 0005576 extracellular region
Probab=22.81 E-value=26 Score=19.07 Aligned_cols=9 Identities=56% Similarity=1.180 Sum_probs=6.7
Q ss_pred CccchhHHH
Q 010480 368 TGLAPFRGF 376 (509)
Q Consensus 368 tGIAP~~s~ 376 (509)
.|++|||+-
T Consensus 6 ~gftpfrgk 14 (19)
T PF06753_consen 6 PGFTPFRGK 14 (19)
T ss_pred CCCCccccc
Confidence 578888864
No 135
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=21.77 E-value=1.3e+02 Score=25.04 Aligned_cols=37 Identities=14% Similarity=0.112 Sum_probs=27.1
Q ss_pred EecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 010480 461 VCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNL 498 (509)
Q Consensus 461 vCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l 498 (509)
+||+.|++.-.+.++|.+.... .|++.++|++++.++
T Consensus 12 lsGsgpA~~~~~~eal~~a~v~-~Gl~~~~A~~lv~~t 48 (107)
T PF14748_consen 12 LSGSGPAYFFLFIEALADAAVA-QGLPREEARKLVAQT 48 (107)
T ss_dssp HCTTHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHH
Confidence 3555567888888888888777 679999999987764
No 136
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=21.69 E-value=1.9e+02 Score=27.27 Aligned_cols=40 Identities=8% Similarity=0.219 Sum_probs=30.2
Q ss_pred eEEEeeeeccCCCCCCCcEEEEEEEeCCC-----CCccCCCCeeEEcccC
Q 010480 111 RSNVAVRKELHTPSSDRSCTHLEFDIAGT-----GLTYETGDHVGVYCEN 155 (509)
Q Consensus 111 ~a~v~~~~~L~~~~~~~~~~~i~l~~~~~-----~~~y~~GD~l~i~p~N 155 (509)
.++|+..+.++. +++.+.|+.++. ...|+||.++.|..+.
T Consensus 3 ~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~ 47 (236)
T cd06210 3 EAEIVAVDRVSS-----NVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPG 47 (236)
T ss_pred eEEEEEEeecCC-----ceEEEEEEeCCcccccccCCcCCCCEEEEEcCC
Confidence 467777777764 678888887642 3789999999997653
No 137
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=21.54 E-value=1.7e+02 Score=29.58 Aligned_cols=43 Identities=16% Similarity=0.064 Sum_probs=33.5
Q ss_pred CCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCC
Q 010480 108 HPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENL 156 (509)
Q Consensus 108 ~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~ 156 (509)
.|+.++|+..+.++. +++.+.|..+ ....|+||.++.|..+|.
T Consensus 8 ~~~~~~V~~i~~~t~-----~v~~l~l~~~-~~~~f~pGQfv~l~~~~~ 50 (332)
T PRK10684 8 CPNRMQVHSIVQETP-----DVWTISLICH-DFYPYRAGQYALVSIRNS 50 (332)
T ss_pred CceeEEEEEEEccCC-----CeEEEEEcCC-CCCCcCCCCEEEEEecCC
Confidence 467888989888874 6778888754 457899999999976654
No 138
>PF09921 DUF2153: Uncharacterized protein conserved in archaea (DUF2153); InterPro: IPR014450 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.04 E-value=1.4e+02 Score=25.52 Aligned_cols=52 Identities=25% Similarity=0.347 Sum_probs=39.3
Q ss_pred HHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHCCCe
Q 010480 451 NMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDS---SKAESMVKNLQMTGRY 504 (509)
Q Consensus 451 ~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~---~~a~~~~~~l~~~~Ry 504 (509)
+|+ ++..|---=| ..|..+|.+.+.+++.+--.++- .+..+++.++.++|+.
T Consensus 51 ~WL-qdP~ItshMP-reML~dv~~~~~~il~~llelDI~HTS~~rdll~kl~kEGkl 105 (126)
T PF09921_consen 51 QWL-QDPMITSHMP-REMLEDVWETLREILEQLLELDIRHTSQFRDLLKKLAKEGKL 105 (126)
T ss_pred HHH-cCchhHhcCC-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC
Confidence 355 3444555557 88999999999999987666554 3688899999999974
No 139
>PF11074 DUF2779: Domain of unknown function(DUF2779); InterPro: IPR021301 This domain is conserved in bacteria. The function is not known.
Probab=20.88 E-value=94 Score=27.03 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=33.7
Q ss_pred CccHHHHHHHHHhCCCH----------HHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCC
Q 010480 214 SPKKSALLALAAHASDP----------TEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFP 267 (509)
Q Consensus 214 ~p~~~~l~~la~~~~~~----------~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fp 267 (509)
-|++.+++.|.+...+. -||.+|++|+.. -.+|.+.+..-...++|++.-|.
T Consensus 55 DPr~~~~~~L~~~i~~~~g~ivvyN~sfE~~rL~ela~~--~p~~~~~l~~I~~r~vDL~~~f~ 116 (130)
T PF11074_consen 55 DPRRELIEALIKAIGSIYGSIVVYNKSFEKTRLKELAEL--FPDYAEKLNSIIERTVDLLDPFK 116 (130)
T ss_pred CchHHHHHHHHHHhhhhcCeEEEechHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666777666665554 799999999853 34565655554445666666553
No 140
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=20.84 E-value=1.1e+02 Score=29.56 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=22.7
Q ss_pred cEEEEEEEeCCCCCccCCCCeeEEcccC
Q 010480 128 SCTHLEFDIAGTGLTYETGDHVGVYCEN 155 (509)
Q Consensus 128 ~~~~i~l~~~~~~~~y~~GD~l~i~p~N 155 (509)
++++|.|+.++....|+||+++.|..++
T Consensus 10 ~v~~l~l~~~~~~~~~~pGQ~v~l~~~~ 37 (246)
T cd06218 10 DIYRLVLEAPEIAAAAKPGQFVMLRVPD 37 (246)
T ss_pred CeEEEEEeCcchhccCCCCcEEEEEeCC
Confidence 6888888876435789999999998765
No 141
>KOG4723 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.82 E-value=1.2e+02 Score=28.43 Aligned_cols=114 Identities=13% Similarity=0.157 Sum_probs=61.9
Q ss_pred CCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEecCCCCcccchhhH-hhcHHHHHHHHhCCCEEEEecCCcc
Q 010480 389 ELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKM-MEKSSDIWNMLSEGAYLYVCGDAKS 467 (509)
Q Consensus 389 ~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~~~~yvq~~i-~~~~~~v~~~l~~~~~iyvCGp~~~ 467 (509)
+.++++|+.+||.....|++..-|....+.+.- ..+++|++.-++ | +++ ++.+-.+.-.-+++.-||+=|= .
T Consensus 17 EqgkltLl~d~~eT~gsFl~H~~l~~~Lkan~~-~cFlaf~k~fsh--y--~i~~rKlG~~l~t~k~rgqlvF~dgl-~- 89 (248)
T KOG4723|consen 17 EQGKLTLLLDTRETPGSFLFHYYLYHALKANES-TCFLAFSKTFSH--Y--AISMRKLGMDLKTKKNRGQLVFIDGL-S- 89 (248)
T ss_pred CCccEEEEeecccCCceeeHHHHHHHHHhcCCc-EEEEEeecchhH--H--HHHHHHhCCceeecccCCcEEEEhhh-h-
Confidence 348999999988766689999888777665543 578999986332 1 111 1111000000024556777663 1
Q ss_pred hHHH--HHHHHH------HHHHHcCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 468 MARD--VHRTLH------TIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 468 M~~~--v~~~L~------~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
|.-+ +.+.-+ ..+...++-.-.-.++...+.++.-+..+|+|
T Consensus 90 ~~~~~i~~q~~kq~~~t~~~~~a~~~~ni~~v~e~~rE~~~~v~~~e~i~ 139 (248)
T KOG4723|consen 90 MLFAPISKQSKKQAPETKNHIKAVFAPNIQCVEENDREFENSVIIIEDID 139 (248)
T ss_pred hhhCccchhhhhcCchhHHHHHhhcCcchhHHHHHHHHHhhheeeeeeee
Confidence 2211 111111 11112222122334567777778888888887
No 142
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=20.41 E-value=1.1e+02 Score=31.38 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.6
Q ss_pred CEEEEccCCc--cchhHHHHHHHHH
Q 010480 360 PIIMIGPGTG--LAPFRGFLQERFA 382 (509)
Q Consensus 360 pii~Ia~GtG--IAP~~s~l~~~~~ 382 (509)
.+++.||||| |-|-.++.+++..
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHh
Confidence 5899999999 9999999999864
Done!