Query 010480
Match_columns 509
No_of_seqs 399 out of 2520
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 07:43:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010480.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010480hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe2_A CPR, P450R, NADPH--cyto 100.0 2.5E-94 8.7E-99 784.9 52.9 489 5-509 121-617 (618)
2 2bpo_A CPR, P450R, NADPH-cytoc 100.0 4.6E-88 1.6E-92 743.3 47.9 483 5-509 150-682 (682)
3 3qfs_A CPR, P450R, NADPH--cyto 100.0 3.3E-87 1.1E-91 700.8 49.5 429 73-509 21-457 (458)
4 1tll_A Nitric-oxide synthase, 100.0 1.5E-84 5E-89 715.4 43.9 485 5-509 150-654 (688)
5 2qtl_A MSR;, methionine syntha 100.0 3.7E-82 1.3E-86 676.4 43.6 407 100-509 105-538 (539)
6 4dql_A Bifunctional P-450/NADP 100.0 9.2E-81 3.1E-85 643.6 40.6 382 108-509 5-391 (393)
7 1f20_A Nitric-oxide synthase; 100.0 1.5E-78 5.3E-83 635.8 41.7 396 104-509 25-433 (435)
8 1ddg_A Sulfite reductase (NADP 100.0 9.4E-77 3.2E-81 610.7 39.6 367 103-509 5-374 (374)
9 1fnb_A Ferredoxin-NADP+ reduct 100.0 1.3E-38 4.5E-43 320.7 26.4 271 105-509 33-314 (314)
10 2bmw_A Ferredoxin--NADP reduct 100.0 3.3E-38 1.1E-42 316.3 27.9 272 105-509 17-304 (304)
11 2b5o_A FNR, ferredoxin--NADP r 100.0 7E-37 2.4E-41 317.8 27.3 272 105-509 118-402 (402)
12 3vo2_A Putative uncharacterize 100.0 5.4E-37 1.9E-41 308.3 19.6 227 271-509 66-310 (310)
13 2rc5_A Ferredoxin-NADP reducta 100.0 1E-35 3.5E-40 299.6 24.4 276 106-509 18-314 (314)
14 3lo8_A Ferredoxin--NADP reduct 100.0 9.4E-36 3.2E-40 299.4 19.3 228 270-509 60-311 (311)
15 3jqq_A Ferredoxin NADP reducta 100.0 8.3E-34 2.8E-38 285.7 24.7 290 104-509 10-316 (316)
16 1tvc_A Methane monooxygenase c 99.9 8.4E-27 2.9E-31 226.7 16.0 185 270-480 43-233 (250)
17 1qfj_A Protein (flavin reducta 99.9 1.5E-26 5.2E-31 222.2 13.4 183 270-479 29-217 (232)
18 2r6h_A NADH:ubiquinone oxidore 99.9 2.1E-26 7.1E-31 228.8 12.6 182 284-480 84-278 (290)
19 2eix_A NADH-cytochrome B5 redu 99.9 1.1E-26 3.8E-31 224.8 9.2 186 271-480 42-234 (243)
20 1fdr_A Flavodoxin reductase; f 99.9 1.6E-26 5.4E-31 224.4 9.7 189 270-481 30-231 (248)
21 1krh_A Benzoate 1,2-dioxygenas 99.9 8.6E-26 2.9E-30 229.4 13.6 182 270-480 138-324 (338)
22 1umk_A B5R, NADH-cytochrome B5 99.9 2.4E-26 8.4E-31 226.6 7.9 195 271-480 47-266 (275)
23 4fk8_A Ferredoxin--NADP reduct 99.9 1.2E-26 4.1E-31 228.4 4.2 203 270-509 46-268 (271)
24 4eh1_A Flavohemoprotein; struc 99.9 2.1E-25 7.2E-30 215.7 12.9 184 270-481 33-225 (243)
25 1gvh_A Flavohemoprotein; oxido 99.9 2.4E-25 8.1E-30 231.0 13.8 183 270-480 182-379 (396)
26 2bgi_A Ferredoxin-NADP(H) redu 99.9 2.3E-25 8E-30 219.3 9.3 188 270-480 43-249 (272)
27 4g1v_A Flavohemoglobin; three 99.9 8.9E-25 3E-29 226.9 14.2 185 270-480 183-379 (399)
28 1ep3_B Dihydroorotate dehydrog 99.9 4.9E-25 1.7E-29 215.8 10.3 172 271-479 34-212 (262)
29 2qdx_A Ferredoxin reductase; o 99.9 2.3E-25 7.7E-30 217.5 7.3 188 270-480 30-235 (257)
30 1cqx_A Flavohemoprotein; globi 99.9 7.4E-25 2.5E-29 227.8 11.3 186 270-480 184-385 (403)
31 2cnd_A NADH-dependent nitrate 99.9 2.2E-25 7.7E-30 219.0 6.6 194 270-478 42-258 (270)
32 2pia_A Phthalate dioxygenase r 99.9 6E-24 2E-28 214.3 9.5 174 270-478 38-214 (321)
33 2gpj_A Siderophore-interacting 99.8 1.4E-19 4.9E-24 175.9 4.9 171 271-480 39-215 (252)
34 3a1f_A Cytochrome B-245 heavy 99.7 6.7E-18 2.3E-22 155.7 5.2 133 346-480 5-170 (186)
35 3lyu_A Putative hydrogenase; t 99.7 2.4E-17 8.2E-22 145.8 7.3 121 343-481 4-132 (142)
36 3lrx_A Putative hydrogenase; a 99.7 1.4E-17 4.7E-22 150.1 5.8 120 343-480 9-136 (158)
37 3hr4_A Nitric oxide synthase, 98.9 5.2E-10 1.8E-14 105.1 4.0 55 5-61 137-191 (219)
38 1bvy_F Protein (cytochrome P45 97.9 3.7E-06 1.3E-10 77.4 2.7 49 5-55 119-167 (191)
39 2hna_A Protein MIOC, flavodoxi 97.3 0.00014 4.9E-09 63.5 3.8 48 5-54 97-146 (147)
40 1ykg_A SIR-FP, sulfite reducta 97.0 0.00036 1.2E-08 62.4 3.3 50 5-58 108-157 (167)
41 2wc1_A Flavodoxin; electron tr 95.2 0.0084 2.9E-07 54.1 2.9 51 5-57 106-179 (182)
42 3f6r_A Flavodoxin; FMN binding 91.1 0.095 3.3E-06 45.1 2.4 47 5-53 100-147 (148)
43 1f4p_A Flavodoxin; electron tr 90.1 0.1 3.5E-06 44.8 1.7 47 5-53 99-146 (147)
44 3vo2_A Putative uncharacterize 88.0 0.88 3E-05 44.3 7.0 51 104-155 28-78 (310)
45 1ag9_A Flavodoxin; electron tr 86.2 0.26 8.9E-06 43.8 1.8 50 5-56 96-169 (175)
46 2bmv_A Flavodoxin; electron tr 70.8 1.5 5.1E-05 38.2 1.5 46 5-54 95-163 (164)
47 3lo8_A Ferredoxin--NADP reduct 68.6 9.4 0.00032 36.7 7.0 49 106-155 25-73 (311)
48 3s2u_A UDP-N-acetylglucosamine 40.6 21 0.00073 35.1 4.2 25 359-383 3-29 (365)
49 1yob_A Flavodoxin 2, flavodoxi 35.4 32 0.0011 29.9 4.1 24 5-30 105-128 (179)
50 2r6h_A NADH:ubiquinone oxidore 34.6 58 0.002 30.5 6.1 42 109-155 9-51 (290)
51 1tvc_A Methane monooxygenase c 33.9 41 0.0014 30.8 4.8 43 108-155 9-56 (250)
52 1qfj_A Protein (flavin reducta 30.4 72 0.0025 28.6 5.8 40 110-155 3-42 (232)
53 2fcr_A Flavodoxin; electron tr 29.9 18 0.00062 31.3 1.4 25 5-31 101-125 (173)
54 1ep3_B Dihydroorotate dehydrog 29.5 48 0.0016 30.7 4.5 41 111-156 7-47 (262)
55 1krh_A Benzoate 1,2-dioxygenas 29.4 79 0.0027 30.4 6.2 42 109-155 108-151 (338)
56 2xod_A NRDI protein, NRDI; fla 27.2 9.6 0.00033 30.9 -0.8 41 6-52 78-118 (119)
57 2pia_A Phthalate dioxygenase r 27.1 1E+02 0.0036 29.4 6.6 42 109-155 8-51 (321)
58 1umk_A B5R, NADH-cytochrome B5 25.6 1E+02 0.0035 28.4 6.1 42 108-154 15-58 (275)
59 2cnd_A NADH-dependent nitrate 25.3 90 0.0031 28.7 5.6 41 109-154 12-54 (270)
60 2lnb_A Z-DNA-binding protein 1 25.2 1.4E+02 0.0047 22.5 5.2 26 481-506 41-66 (80)
61 4eh1_A Flavohemoprotein; struc 23.9 1.6E+02 0.0053 26.5 6.9 40 111-155 5-46 (243)
62 2bgi_A Ferredoxin-NADP(H) redu 23.0 96 0.0033 28.7 5.3 41 109-155 16-56 (272)
63 2eix_A NADH-cytochrome B5 redu 22.2 1.3E+02 0.0044 27.1 5.9 40 110-154 12-53 (243)
64 4fk8_A Ferredoxin--NADP reduct 20.3 99 0.0034 28.5 4.7 39 110-154 20-58 (271)
No 1
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=100.00 E-value=2.5e-94 Score=784.91 Aligned_cols=489 Identities=40% Similarity=0.740 Sum_probs=421.6
Q ss_pred ccccCCcchhHHHHHhhcCCeecccCcccCCCCCchhhHHHHHHHHHHHHHhhhCCCCCCCCCCCCCcccccceEEEEec
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYD 84 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~~~e~~f~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (509)
+||+|| |++|++|++|||++++|+|+||++.++|++|++|++.||++|++.++.+... . . ...+.+++....
T Consensus 121 ~f~~~~--k~~d~~L~~lGa~~~~~~g~~D~~~~~~~~~~~W~~~l~~~l~~~~~~~~~~--~-~---~~~~~~~~~~~~ 192 (618)
T 3qe2_A 121 HFNAMG--KYVDKRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWLAVCEHFGVEATG--E-E---SSIRQYELVVHT 192 (618)
T ss_dssp STTHHH--HHHHHHHHHTTCEESSCCEEEETTSCHHHHHHHHHHHHHHHHHHHHTCCCC---------CCCCSEEEEECT
T ss_pred hHhHHH--HHHHHHHHhCCCCEeecccccccCCCcHHHHHHHHHHHHHHHHHHhCCCccc--c-c---ccccceeEEecc
Confidence 599999 9999999999999999999999999999999999999999999988643211 0 0 122455555432
Q ss_pred CCCcc---cccc-c-cCCCCCCCcccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHH
Q 010480 85 NADAS---VGEK-S-WGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSET 159 (509)
Q Consensus 85 ~~~~~---~~~~-~-~~~~~~~~~~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~ 159 (509)
..... ..+. . ........+++.++|+.|+|++|++|+. +++++|+||+|++++++++|+|||+|+|+|.|+++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~~n~~Lt~-~~~~~~~hie~~~~~~~~~Y~~GD~l~V~p~N~~~~ 271 (618)
T 3qe2_A 193 DIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLNQ-GTERHLMHLELDISDSKIRYESGDHVAVYPANDSAL 271 (618)
T ss_dssp TCCGGGSBCSCCSSTTTTTSCCSCCSSSSCEEEEEEEEEECSC-CSSSCEEEEEEECTTSCCCCCTTCEEEECCCCCHHH
T ss_pred cccccccccccccccccccccCCCcccCCcEEEEEEeEEEcCC-CCCCcEEEEEEEcCCCCcccccCCEEEEEcCCCHHH
Confidence 11100 0000 0 0111223456678899999999999985 678999999999998899999999999999999999
Q ss_pred HHHHHHHhCCCCCcEEEEecCCCCCCCCCCCCCCCCCC-cccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHH
Q 010480 160 VEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRH 238 (509)
Q Consensus 160 V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~ 238 (509)
|+++|++||+++|+.|++...... ...+.|+| |+|++++|++|+||+++|+++||+.||+||+|+.||++|++
T Consensus 272 V~~~l~~l~l~~d~~v~~~~~~~~------~~~~~~~p~~~tl~~~l~~~~di~~~p~~~~l~~la~~~~~~~~k~~L~~ 345 (618)
T 3qe2_A 272 VNQLGKILGADLDVVMSLNNLDEE------SNKKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRK 345 (618)
T ss_dssp HHHHHHHTTCCTTCEEEEEESCTT------CSCCSSSSSSEEHHHHHHHTBCCSSCCCHHHHHHHGGGBCSHHHHHHHHH
T ss_pred HHHHHHHhCcCCCceEEEecCCcc------ccCCCCCCCceEHHHhhhhEeecCCCCcHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999754321 12345788 99999999999999999999999999999999999999999
Q ss_pred hc--CccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCC
Q 010480 239 LA--SPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTG 316 (509)
Q Consensus 239 l~--~~~~~~~~~~~~~~~~~~~~dvl~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~ 316 (509)
|+ +++|+++|++|+.+++++++|||++||++++|+++|++. +|+++||+|||||+|..++++++|+|+++.+.++.+
T Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~dvL~~fps~~~p~~~l~~~-lp~l~pR~YSIsSsp~~~~~~i~ltv~vv~~~~~~~ 424 (618)
T 3qe2_A 346 MASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCEL-LPRLQARYYSIASSSKVHPNSVHICAVVVEYETKAG 424 (618)
T ss_dssp TTCSSSHHHHHHHHHTTTTTCCHHHHHHHSTTBCCCHHHHHHH-SCBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTS
T ss_pred hhccChhhHHHHHHHHhhcCCCHHHHHHhCCccCCCHHHHHHh-ccccccceeccccCCcCCCCEEEEEEEEEEEecCCC
Confidence 99 678899999999999999999999999999999999986 599999999999999877899999999999988888
Q ss_pred ccccCcCchhhhhcCCCccCCCCceeeEEEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEE
Q 010480 317 RVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLF 396 (509)
Q Consensus 317 ~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~ 396 (509)
+.+.|+||+||+++.+.|+......++|++|.|.|++|.++.+|+||||+|||||||+||+++++.....+...++++||
T Consensus 425 ~~~~G~~S~~L~~l~~~Gd~~~~~~v~v~~p~g~F~lp~~~~~piimIg~GtGIAPfrs~l~~r~~~~~~g~~~~~~~L~ 504 (618)
T 3qe2_A 425 RINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLY 504 (618)
T ss_dssp CEEECHHHHHHHTCCCC-----CCEEEEEEECCSCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEE
T ss_pred CCCCCcccHHHHhhcccCCCCcceEEEEEEecCcccCCCCCCCCeEEEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 89999999999999883320001258899999999999888899999999999999999999998765444345789999
Q ss_pred EeccCCCCccccHHHHHHHHHcCCcCeEEEEEecCCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHH
Q 010480 397 FGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTL 476 (509)
Q Consensus 397 ~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L 476 (509)
||||+++.|++|++||++|.+.+.+++++++|||+++.++|||+++.++.+.+++++.++++||||||+..|+++|.++|
T Consensus 505 ~G~R~~~~D~ly~~el~~~~~~g~l~~l~~a~Srd~~~k~yVqd~l~~~~~~l~~~l~~~a~vYvCGp~~~M~~~V~~~L 584 (618)
T 3qe2_A 505 YGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTF 584 (618)
T ss_dssp EEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSSSCCCHHHHHHHTHHHHHHHHHHTCEEEEEEETTTHHHHHHHHH
T ss_pred EecCCCccccchHHHHHHHHhcCCCcEEEEEEcCCCCCCCcHHHHHHHhHHHHHHHHhCCcEEEEECCchHHHHHHHHHH
Confidence 99999955999999999999989888999999999888999999999999899988877899999999448999999999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 477 HTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 477 ~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
.+++.+++++++++|++|+++|+++|||++|||
T Consensus 585 ~~i~~~~g~~~~~~a~~~~~~l~~~~RY~~Dv~ 617 (618)
T 3qe2_A 585 YDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 617 (618)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCeEEeec
Confidence 999999999999999999999999999999999
No 2
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=100.00 E-value=4.6e-88 Score=743.32 Aligned_cols=483 Identities=32% Similarity=0.583 Sum_probs=409.0
Q ss_pred ccccCCcchhHHHHHhhcCCeecccCcccCCCC-CchhhHHHHHHHHHHHHHhhhCCCCCCCCCCCCCcccccceEEEEe
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQ-CIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFY 83 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~-~~e~~f~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (509)
+||+|| |+|+++|+++||+++.|+|+||++. +++++|++|.+.||++|++.++.+... . ...+.+.+...
T Consensus 150 ~f~~a~--k~l~~~L~~lGa~~l~~~~~~D~~~~~~~~~~~~W~~~l~~~l~~~~~~~~~~-~------~~~~~~~~~~~ 220 (682)
T 2bpo_A 150 FFNGAA--KKAEKHLSAAGAIRLGKLGEADDGAGTTDEDYMAWKDSILEVLKDELHLDEQE-A------KFTSQFQYTVL 220 (682)
T ss_dssp STTHHH--HHHHHHHHHTTCEECSCCEEEETTTTCHHHHHHHHHHHHHHHHHHHTTCCCCC-C------CCCCSBCCEEC
T ss_pred hHhHHH--HHHHHHHHHCCCeEeECcEEEecCCcccHHHHHHHHHHHHHHHHhhcCCcccc-c------ccCCcceeEec
Confidence 699999 9999999999999999999999984 899999999999999999887533211 0 01122333222
Q ss_pred cC--CCccccccc---cCC--------CCCCCcccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeE
Q 010480 84 DN--ADASVGEKS---WGN--------ANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVG 150 (509)
Q Consensus 84 ~~--~~~~~~~~~---~~~--------~~~~~~~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~ 150 (509)
.. ......+.. ... .+....++.++|+.|+|++|++|+. +++|+|+||+|++++++++|+|||+|+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~-~~~~~~~hie~d~~~~~~~Y~~GD~l~ 299 (682)
T 2bpo_A 221 NEITDSMSLGEPSAHYLPSHQLNRNADGIQLGPFDLSQPYIAPIVKSRELFS-SNDRNCIHSEFDLSGSNIKYSTGDHLA 299 (682)
T ss_dssp SSCCTTSCSSCSSGGGSTTSCCCCCTTCCBCSCCBTTBCCCEEEEEEEECCC-CSSCCEEEEEEECTTBTCCCCTTCEEE
T ss_pred ccCCccccccCccccccccccccccccccccCcccCCCceEEEEEEEEEccC-CCCCCEEEEEEEcCCCCceecCCCEEE
Confidence 11 000000000 000 0122345677899999999999998 889999999999988899999999999
Q ss_pred EcccCCHHHHHHHHHHhCCCCCcEEEEecCCCCCCCCCCCCCCCCCC-cccHHHHHhhcccccCCccHHHHHHHHHhCCC
Q 010480 151 VYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASD 229 (509)
Q Consensus 151 i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~ 229 (509)
|||.|+++.|+++|++||+++|+.|++..... ..+.|+| |+|++++|++|+||+++|++.||+.||.||+|
T Consensus 300 V~P~N~~~~V~~~l~~l~l~~d~~v~~~~~~~--------~~~~p~p~~~tl~~~l~~~ldi~~~p~~~~l~~la~~a~~ 371 (682)
T 2bpo_A 300 VWPSNPLEKVEQFLSIFNLDPETIFDLKPLDP--------TVKVPFPTPTTIGAAIKHYLEITGPVSRQLFSSLIQFAPN 371 (682)
T ss_dssp ECCCCCHHHHHHHHHHHTCCTTCEEECCBSST--------TCCCSSCSSEEHHHHHHHTBCCSSCCCHHHHHHHSTTCSS
T ss_pred EEcCCCHHHHHHHHHHhhccCCcEEEEecCCc--------ccCCCCCCCccHHHHHHHhhhccCCCCHHHHHHHHHHCCC
Confidence 99999999999999999999999998864322 1345788 99999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCC----CCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEE
Q 010480 230 PTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFP----SAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVT 305 (509)
Q Consensus 230 ~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fp----s~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~lt 305 (509)
+.||++|++|+ +|+++|.+|+.+.++|++|||.+|| ++++|++++++. +|+++||+|||||+|..+++.++|+
T Consensus 372 ~~~k~~L~~l~--~~~~~~~~~~~~~~~~i~dvL~~fp~~~~s~~~p~~~l~~~-lp~l~~R~YSIsSsp~~~~~~i~lt 448 (682)
T 2bpo_A 372 ADVKEKLTLLS--KDKDQFAVEITSKYFNIADALKYLSDGAKWDTVPMQFLVES-VPQMTPRYYSISSSSLSEKQTVHVT 448 (682)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHTGGGTCCHHHHHHHHHTTCCCTTSCHHHHHHH-SCBCCCEEEEBCSCTTTCTTEEEEE
T ss_pred HHHHHHHHHhc--cCHHHHHHHHhcCCCCHHHHHHhccCcccccCCCHHHHHHh-CcccccccccccCCcccCCCeEEEE
Confidence 99999999999 6999999999999999999999999 899999999976 5999999999999998767999999
Q ss_pred EEEEEeeCCC---CccccCcCchhhhhcCCC-----------ccCC---------CCceeeEEEecCCCCCCCCCCCCEE
Q 010480 306 CALVYEKTPT---GRVHKGLCSTWMKNSLPM-----------EKSN---------DCSWAPIFVRQSNFKLPADAKVPII 362 (509)
Q Consensus 306 v~~v~~~~~~---~~~~~G~~S~~L~~~~~~-----------~~~~---------~~~~v~v~~~~g~F~lp~~~~~pii 362 (509)
|+++.+.++. ++.+.|+||+||+++.++ |+.. .+..++++++.+.|.+|.++.+|+|
T Consensus 449 v~Vv~~~~~~~~~~~~~~G~~S~~L~~l~~g~~~~~~~~~~~G~~v~i~GP~G~f~~~~v~v~vr~~~F~Lp~~~~~piI 528 (682)
T 2bpo_A 449 SIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAETNLPVHYDLNGPRKLFANYKLPVHVRRSNFRLPSNPSTPVI 528 (682)
T ss_dssp EECCEECCSSCTTSCCEECHHHHHHHHHHHHHTTCCTTTSCCCCCCCSSCGGGTTTTTEECEEEECCSCCCCSSTTSCEE
T ss_pred EEEEEEecCcccCCcccCccccHHHHhcccccccccccccccccceeeccCcCcccCceEEEEEecCcccCCCCCCCCEE
Confidence 9998887775 677899999999987662 1111 0125778888889999987789999
Q ss_pred EEccCCccchhHHHHHHHHHHHh------hcCCCCCeEEEEeccCCCCccccHHHHHHHH-HcCCcCeEEEEEec-CCCC
Q 010480 363 MIGPGTGLAPFRGFLQERFALQE------AGAELGPSLLFFGCRNRKMDYIYEDELNNFV-QSGALSQLIVAFSR-EGPT 434 (509)
Q Consensus 363 ~Ia~GtGIAP~~s~l~~~~~~~~------~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~-~~~~~~~~~~a~Sr-~~~~ 434 (509)
|||+|||||||+||++++...+. .+...++++||||||++. |++|++||++|+ +.+.+++++++||| +++.
T Consensus 529 mIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~~~~~~L~fG~R~~~-D~ly~dEl~~~~~~~g~~~~l~~afSr~d~~~ 607 (682)
T 2bpo_A 529 MIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYGSRNTD-DFLYQDEWPEYAKKLDGSFEMVVAHSRLPNTK 607 (682)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHHHTCC----CCCCCCEEEEEEESSSS-SCTTTTTHHHHHHHHGGGEEEEEEESCCTTSC
T ss_pred EEecCcChHHHHHHHHHHHHhhcccccccccCCcCCEEEEEecCChh-hhhhHHHHHHHHHhcCCceEEEEEECCCCCCC
Confidence 99999999999999999987654 233357999999999995 999999999995 45777799999999 5667
Q ss_pred cccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 435 KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 435 ~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
++|||++|.++.+.+++++.++++||||||++.|+++|.++|.+++.+++++++++|++|+++|+++|||++|||
T Consensus 608 k~yVqd~l~e~~~~l~~~l~~~~~vYvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~Dvw 682 (682)
T 2bpo_A 608 KVYVQDKLKDYEDQVFEMINNGAFIYVCGDAKGMAKGVSTALVGILSRGKSITTDEATELIKMLKTSGRYQEDVW 682 (682)
T ss_dssp CCCHHHHHHHTHHHHHHHHTTTCEEEEEECSTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CcchHHHHHhhHHHHHHHHhCCcEEEEeCCchHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 999999999998899998877899999999668999999999999999999999999999999999999999999
No 3
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=100.00 E-value=3.3e-87 Score=700.80 Aligned_cols=429 Identities=41% Similarity=0.767 Sum_probs=376.4
Q ss_pred ccccceEEEEecCCCcc---ccccc--cCCCCCCCcccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCC
Q 010480 73 AAISEYRVVFYDNADAS---VGEKS--WGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGD 147 (509)
Q Consensus 73 ~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD 147 (509)
...++|++..+++.+.. ..+.. ....++..+++.++|+.|+|++|++||. +++|+|+||+||+++++++|+|||
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~ge~~~~~~~~~~~~~~~~~~p~~a~v~~n~~Lt~-~~~r~~~hie~dl~~s~l~Y~~GD 99 (458)
T 3qfs_A 21 MSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLNQ-GTERHLMHLELDISDSKIRYESGD 99 (458)
T ss_dssp ---CCEEEEECTTCCGGGCBSSCSSSTTTTTSCCSCCCSSSCEEEEEEEEEECCS-SSSSCEEEEEEECTTSCCCCCTTC
T ss_pred cceeceEEEEccCccccccccCChhhcccccccCCCCCCCCCEEEEEEEEEEcCC-CCCCCEEEEEEEeCCCCcccCCCC
Confidence 35678888887644322 11211 1233456678899999999999999997 578999999999998899999999
Q ss_pred eeEEcccCCHHHHHHHHHHhCCCCCcEEEEecCCCCCCCCCCCCCCCCCC-cccHHHHHhhcccccCCccHHHHHHHHHh
Q 010480 148 HVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAH 226 (509)
Q Consensus 148 ~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~ 226 (509)
+|+|||.|+++.|+++|++||+++|+.|++...... ...+.|+| |+|++++|++|+||+++|+++||+.||+|
T Consensus 100 ~l~V~p~N~~~~V~~~l~~l~~~~d~~v~~~~~~~~------~~~~~p~~~~~tl~~~l~~~~di~~~p~~~~l~~la~~ 173 (458)
T 3qfs_A 100 HVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEE------SNKKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQY 173 (458)
T ss_dssp EEEECCCCCHHHHHHHHHHHTCCTTCEEEEEESSTT------CSCCCSSSSSEEHHHHHHHTBCCSSCCCHHHHHHHGGG
T ss_pred EEEEEeeCCHHHHHHHHHHhCcCCCceEEecCCCcc------cccCCCCCCCeeHHHHHHhcEeccCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999753321 12345788 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCc--cCHHHHHHHHHhcCCCHHHHHhhCCCCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEE
Q 010480 227 ASDPTEADRLRHLASP--AGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHV 304 (509)
Q Consensus 227 ~~~~~e~~~L~~l~~~--~~~~~~~~~~~~~~~~~~dvl~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~l 304 (509)
|+|+.||++|++|++. +|+++|.+|+.+++++++|||++||++++|+++|+++ +|+++||+|||||+|..+++.++|
T Consensus 174 a~~~~ek~~L~~l~~~~~~~~~~~~~~~~~~~~~ildvL~~fps~~~p~~~ll~~-lp~l~pR~YSIsSsp~~~~~~i~l 252 (458)
T 3qfs_A 174 ASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCEL-LPRLQARYYSIASSSKVHPNSVHI 252 (458)
T ss_dssp BCSHHHHHHHHHHHSCSHHHHHHHHHHTTTTTCCHHHHHHHSTTBCCCHHHHHHH-SCBCCCEEEECCSCTTTCTTEEEE
T ss_pred cCCHHHHHHHHHHhccCcccHHHHHHHHhhcCCCHHHHHHhCCccCCCHHHHHhh-CCCCcceeEeeccCcccCCCEEEE
Confidence 9999999999999874 6889999999999999999999999999999999987 499999999999999877899999
Q ss_pred EEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHH
Q 010480 305 TCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQ 384 (509)
Q Consensus 305 tv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~ 384 (509)
+|++|.+.++.++.+.|.||+||+++.++|+......++|+++.|.|.+|.++.+|+||||+|||||||+||++++....
T Consensus 253 tV~vv~~~~~~~r~~~G~~S~~L~~l~~gg~~~~~~~v~v~~p~g~F~lp~~~~~piImIggGTGIAPfrs~lq~r~~l~ 332 (458)
T 3qfs_A 253 CAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLR 332 (458)
T ss_dssp EEECCEEECTTSCEEECHHHHHHHTCCSSCSSCCCCEEEEEEECCSCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCCCCCCchhHHHHhhccCCccCCceEEEEEecCCCcccCCCCCCceEEEcCCcchhhHHHHHHHHHHHH
Confidence 99999888888889999999999999887642111248899999999999888899999999999999999999986544
Q ss_pred hhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEecCCCCcccchhhHhhcHHHHHHHHhCCCEEEEecC
Q 010480 385 EAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGD 464 (509)
Q Consensus 385 ~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp 464 (509)
..+...++++||||||+...|++|++||++|.+.+.+++++++|||+++.++|||++|.++.+.+++++.++++||||||
T Consensus 333 ~~g~~~~~~~Lf~G~R~~~~D~ly~dEl~~l~~~g~l~~l~~a~SRd~~~k~yVqd~l~~~~~~l~~~l~~~~~vYvCGp 412 (458)
T 3qfs_A 333 QQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGD 412 (458)
T ss_dssp HHTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEEE
T ss_pred hcCCCCCCEEEEEEeCCchHhhhHHHHHHHHHHcCCCCEEEEEEECCCCCcccHhHHHHHhHHHHHHHhcCCCEEEEECC
Confidence 33333478999999999744999999999999998888899999999888999999999998899998888999999999
Q ss_pred CcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 465 AKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 465 ~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
++.|+++|.++|.+|+++++++++++|++|+++|+++|||++|||
T Consensus 413 ~~~M~~~V~~~L~~i~~~~g~~~~~~A~~~~~~l~~~~RY~~Dvw 457 (458)
T 3qfs_A 413 ARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 457 (458)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEEEec
Confidence 558999999999999999999999999999999999999999999
No 4
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=100.00 E-value=1.5e-84 Score=715.43 Aligned_cols=485 Identities=32% Similarity=0.578 Sum_probs=403.2
Q ss_pred ccccCCcchhHHHHHhhcCCeecccCcccCCCCCchhhHHHHHHHHHHHHHhhhCCCCCCCCCC-------CCCcccccc
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVS-------TPYTAAISE 77 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~~~e~~f~~W~~~l~~~l~~~~~~~~~~~~~~-------~~~~~~~~~ 77 (509)
+||+|| |.||++|++|||+|++++|+||+..|.|++|++|.+.+|++|++.++.+.+..... .......+.
T Consensus 150 ~F~~~~--k~ld~~L~~lGa~rl~~~~~~D~~~g~e~~f~~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (688)
T 1tll_A 150 HFCAFG--HAVDTLLEELGGERILKMREGDELCGQEEAFRTWAKKVFKAACDVFCVGDDVNIEKPNNSLISNDRSWKRNK 227 (688)
T ss_dssp STTHHH--HHHHHHHHHTTCEESSCCEEEETTTTHHHHHHHHHHHHHHHHHHHHTCCSSSCCC-------CCSSSCCTTT
T ss_pred HHHHHH--HHHHHHHHHcCCceeecceeeccCCCcHHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcc
Confidence 699999 99999999999999999999999989999999999999999998875332110000 000011234
Q ss_pred eEEEEecCCCccccccccCCCCCCCcccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCC-CCccCCCCeeEEcccCC
Q 010480 78 YRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGT-GLTYETGDHVGVYCENL 156 (509)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~-~~~y~~GD~l~i~p~N~ 156 (509)
+++......... .. ....++.++|+.++|++|++|+.++++|+|+||+|+++++ +++|+|||+|+|+|.|+
T Consensus 228 ~~~~~~~~~~~~--~~------~~~~~~~~~~~~a~v~~~~~Lt~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~P~N~ 299 (688)
T 1tll_A 228 FRLTYVAEAPDL--TQ------GLSNVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNH 299 (688)
T ss_dssp EEEEECSCCCCH--HH------HHHHHTTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCC
T ss_pred eEEecccccccc--cc------cccccccCCceEEEEEeeeecCCCCCCceEEEEEEecCCCCCCccCCCCEEEEecCCC
Confidence 444432211000 00 0012345678999999999999999999999999999764 79999999999999999
Q ss_pred HHHHHHHHHHhCC--CCCcEEEEecCCCCCCCCC---CCCCCCCCCcccHHHHHhhcccccCCccHHHHHHHHHhCCCHH
Q 010480 157 SETVEEALSLLGL--SPDTYFSLHTDKEDGTPLG---KSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPT 231 (509)
Q Consensus 157 ~~~V~~~l~~l~l--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~ 231 (509)
++.|+++|++||+ ++|+.|++....+...+.+ ....+.++||+|++++|++|+||+++|++.||+.||+||+|+.
T Consensus 300 ~~~V~~~l~~l~~~~~~d~~v~~~~~~~~~~p~~~~~~~~~~~~~p~~tl~~~l~~~lDi~~~p~~~~l~~la~~a~~~~ 379 (688)
T 1tll_A 300 EDLVNALIERLEDAPPANHVVKVEMLEERNTALGVISNWKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEK 379 (688)
T ss_dssp HHHHHHHHTTCSSCCCSCSCEEEEEEEECCCSSSCCEEEEECCSSCSBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHH
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEeccccccCCCcccccccccCCCCCccHHHHHHhheeCCCCCCHHHHHHHHHHcCCHH
Confidence 9999999999986 6788998864321111111 0112346779999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEe
Q 010480 232 EADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYE 311 (509)
Q Consensus 232 e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~ 311 (509)
||++|++|++ +++.|.+|+...+++++|||.+||++++|+++++.. +|++.+|+|||||+|..+++.++|+|+++.+
T Consensus 380 ek~~L~~l~~--~~~~~~~~~~~~~~~i~evl~~fps~~~p~~~l~~~-lp~l~~R~YSIsSsp~~~~~~i~l~V~vv~~ 456 (688)
T 1tll_A 380 EKQRLLVLSK--GLQEYEEWKWGKNPTMVEVLEEFPSIQMPATLLLTQ-LSLLQPRYYSISSSPDMYPDEVHLTVAIVSY 456 (688)
T ss_dssp HHHHHHHHTT--CSHHHHHHHHHHCCCHHHHHHHSTTBCCCHHHHHHH-SCBCCCEEEEBCSCTTTSTTEEEEEEECCEE
T ss_pred HHHHHHHHhc--CHHHHHHHHhhcCCCHHHHHHhCCCcCCCHHHHHHh-CcccceeEEeecCCcccCCCeEEEEEEEEEE
Confidence 9999999996 788999999999999999999999999999999976 5999999999999998667899999998877
Q ss_pred eCCC--CccccCcCchhhhhcCCCccCCCCceeeEEEe-cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHh-hc
Q 010480 312 KTPT--GRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQE-AG 387 (509)
Q Consensus 312 ~~~~--~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~-~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~-~~ 387 (509)
.++. ++.+.|.||+||+++.+|+ .+.|.++ +|.|.+|.+..+|+||||+|||||||+||++++..... .+
T Consensus 457 ~~~~g~~~~~~G~~S~~L~~l~~Gd------~v~v~~~p~g~F~lp~~~~~piIlIagGtGIAP~~s~l~~~~~~~~~~~ 530 (688)
T 1tll_A 457 HTRDGEGPVHHGVCSSWLNRIQADD------VVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKG 530 (688)
T ss_dssp ETGGGTSCEEECHHHHHHTTCCTTS------EEEEEEECCGGGSCCSCTTSCEEEEEEGGGGTTHHHHHHHHHHHHHHSC
T ss_pred ecCCCCCCcCCCchhHHHHhCCCCC------EEEEEeccCCCcccCcCCCCCEEEEEcCcchHHHHHHHHHHHHhhhhcc
Confidence 6654 3567899999999876654 4788885 56999998778999999999999999999999986522 12
Q ss_pred CCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEecCCCC-cccchhhHhhc-HHHHHHHH-hCCCEEEEecC
Q 010480 388 AELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT-KEYVQHKMMEK-SSDIWNML-SEGAYLYVCGD 464 (509)
Q Consensus 388 ~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~~-~~yvq~~i~~~-~~~v~~~l-~~~~~iyvCGp 464 (509)
...++++||||||+++.|++|++||++|.+.+.+++++++|||++.. ++|||++|.++ .+.+++++ ..+++||||||
T Consensus 531 ~~~~~v~L~~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~~k~yVq~~l~~~l~~~l~~~l~~~~~~vYvCGp 610 (688)
T 1tll_A 531 MNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGD 610 (688)
T ss_dssp CCCCCEEEEEEESCTTTTCTTHHHHHHHHHTTSEEEEEEEESSCTTSCCCCHHHHHHHSSHHHHHHHHHTSCCEEEEEEE
T ss_pred CCCCCEEEEEEeccchhhhhHHHHHHHHHHcCCceEEEEEECCCCCCCccchhhhhHHhHHHHHHHhhccCCcEEEEeCC
Confidence 23478999999999976899999999999988888899999998754 89999999987 77778766 56899999999
Q ss_pred CcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 465 AKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 465 ~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
++|+++|.++|.+++.+++++++++|++|+++|+.++||+.|+|
T Consensus 611 -~~M~~~V~~~L~~i~~~~gg~~~~~a~~~l~~l~~~~ry~~Evf 654 (688)
T 1tll_A 611 -VTMAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNRYHEDIF 654 (688)
T ss_dssp -HHHHHHHHHHHHHHHHTTTCCCTTHHHHHHHHHHHTTCEEEEEE
T ss_pred -HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhhcCCEEEEec
Confidence 78999999999999999999999999999999999999999998
No 5
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=100.00 E-value=3.7e-82 Score=676.44 Aligned_cols=407 Identities=34% Similarity=0.626 Sum_probs=352.0
Q ss_pred CCCcccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCC--CcEEEE
Q 010480 100 GHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSP--DTYFSL 177 (509)
Q Consensus 100 ~~~~~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~--~~~~~~ 177 (509)
...+++.++|+.|+|++|++||.++++|+|+||+||+++++++|+|||+|+|+|.|+++.|+++|++||+++ +..|++
T Consensus 105 ~~~~~~~~~~~~a~v~~~~~Lt~~~~~r~v~hield~~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~~v~~ 184 (539)
T 2qtl_A 105 QVSVTSADPVFQVPISKAVQLTTNDAIKTTLLVELDISNTDFSYQPGDAFSVICPNSDSEVQSLLQRLQLEDKREHCVLL 184 (539)
T ss_dssp --------CCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECCCCHHHHHHHHHHTTCGGGTTSEEEE
T ss_pred ccCCCCCCCCEEEEEEeeEEcCCCCCCCcEEEEEEecCCCCcCcCCCCEEEEEeCCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 345677889999999999999999999999999999998889999999999999999999999999999986 567777
Q ss_pred ecCCCCCCCCCCCCCCCCCC-cccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcC
Q 010480 178 HTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQ 256 (509)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~ 256 (509)
........ .+..++.++| ++|++++|++|+||+++|++.||+.||+||+|+.||++|.+|++++|+++|++|+.+.+
T Consensus 185 ~~~~~~~~--~~~~~p~~~p~~~tl~~~L~~~lDi~~~p~~~~l~~la~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~ 262 (539)
T 2qtl_A 185 KIKADTKK--KGATLPQHIPAGCSLQFIFTWCLEIRAIPKKAFLRALVDYTSDSAEKRRLQELCSKQGAADYSRFVRDAC 262 (539)
T ss_dssp EECTTCCC--TTCCCCTTSCTTCBHHHHHHHTBCTTSCCCHHHHHHHHTTBCSHHHHHHHHHHHSSTTHHHHHHHTTTTT
T ss_pred eccccccC--CCccCCCCCCCcccHHHHHHHHhhhcCCCCHHHHHHHHHHcCCHHHHHHHHHHhChhhHHHHHHHHhhcC
Confidence 65432211 1235677899 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhhCCCCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeC--CCCccccCcCchhhhhcC---
Q 010480 257 RSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKT--PTGRVHKGLCSTWMKNSL--- 331 (509)
Q Consensus 257 ~~~~dvl~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~--~~~~~~~G~~S~~L~~~~--- 331 (509)
++++|||.+||++++|+++|++. +|++++|+|||||+|..+++.++|+|+++.+.+ ..++.+.|+||+||+++.
T Consensus 263 ~~lldvL~~fps~~~p~~~ll~~-lp~l~~R~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~~~G~~S~~L~~l~~~~ 341 (539)
T 2qtl_A 263 ACLLDLLLAFPSCQPPLSLLLEH-LPKLQPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASV 341 (539)
T ss_dssp CCHHHHHHHSTTBCCCHHHHHHH-SCBCCCEEEECCSCTTTSTTEEEEEEECCEEECSCSSCSEEECHHHHHHHHHTTTT
T ss_pred CCHHHHHHhCCCcCCCHHHHHHh-CcCCcceEEeecCCccCCCCEEEEEEEEEEeccCCCCCcCCCCchhhHHHHhhhhh
Confidence 99999999999999999999976 599999999999999766799999999987743 345678899999999983
Q ss_pred --------CCccC-CCCceeeEEEec-CCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhc--CCCCCeEEEEec
Q 010480 332 --------PMEKS-NDCSWAPIFVRQ-SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG--AELGPSLLFFGC 399 (509)
Q Consensus 332 --------~~~~~-~~~~~v~v~~~~-g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~--~~~~~~~L~~G~ 399 (509)
+|+.. ..+..++|+++. |.|.+|.+..+|+||||+|||||||+||++++....+.+ ...++++|||||
T Consensus 342 ~~~~~~~~~Gd~~~~~~~~V~v~~p~g~~F~Lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~LffG~ 421 (539)
T 2qtl_A 342 LQPNIHASHEDSGKALAPKISIFPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGC 421 (539)
T ss_dssp C--------------CCCEEEEEECSCCCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEE
T ss_pred ccccccCCCCCccccCceEEEEEeeeCCCccCCccCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEEEEEEE
Confidence 33300 001157888886 599999877899999999999999999999987654332 134889999999
Q ss_pred cCCCCccccHHHHHHHHHcCCcCeEEEEEecCCC------CcccchhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHH
Q 010480 400 RNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDV 472 (509)
Q Consensus 400 R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~------~~~yvq~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v 472 (509)
|+++.|++|++||++|.+.+.+++++++|||++. .++|||++|.++.+.+++++ ..+++||||||++.|+++|
T Consensus 422 R~~~~D~ly~dEL~~~~~~g~~~~l~~afSRd~~~~~~~g~k~yVqd~l~e~~~~l~~~l~~~~a~vYVCGp~~~M~~~V 501 (539)
T 2qtl_A 422 RHKDRDYLFRKELRHFLKHGILTHLKVSFSRDAPVGEEEAPAKYVQDNIQLHGQQVARILLQENGHIYVCGDAKNMAKDV 501 (539)
T ss_dssp SCTTTCCTTHHHHHHHHHTTSSCEEEEEESSSCC------CCCSHHHHHHHTHHHHHHHHHHSCCEEEEEESCHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCCCcEEEEEEccCCCccccCCCccchhHHHHHhHHHHHHhhccCCcEEEEECCCHHHHHHH
Confidence 9994499999999999999988899999999876 78999999999988999988 5689999999944999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 473 HRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 473 ~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
.++|.+++++++++++++|++|+++|+++|||++|||
T Consensus 502 ~~~L~~i~~~~~~~~~~~A~~~l~~l~~~~RY~~Dvw 538 (539)
T 2qtl_A 502 HDALVQIISKEVGVEKLEAMKTLATLKEEKRYLQDIW 538 (539)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcEEEEcC
Confidence 9999999999999999999999999999999999999
No 6
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=100.00 E-value=9.2e-81 Score=643.58 Aligned_cols=382 Identities=34% Similarity=0.612 Sum_probs=336.4
Q ss_pred CCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCCcEEEEecCCCCCCCC
Q 010480 108 HPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPL 187 (509)
Q Consensus 108 ~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~ 187 (509)
+++.|+|++|++||.++++|+|+||+|+++ ++++|+|||+|+|+|.|+++.|+++|++||+++++.+++.....
T Consensus 5 ~~~~a~v~~n~~Lt~~~~~~~~~hie~~l~-~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~----- 78 (393)
T 4dql_A 5 GAFSTNVVASKELQQPGSARSTRHLEIELP-KEASYQEGDHLGVIPRNYEGIVNRVTARFGLDASQQIRLEAEEE----- 78 (393)
T ss_dssp CCEEEEEEEEEECSCTTCSCCEEEEEEECC-TTCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEECCCC--------
T ss_pred CcEEEEEEeEEEcCCCCCCceEEEEEEECC-CCCccCCCCEEEEEccCCHHHHHHHHHHhCcCCCCeEEEeCCCC-----
Confidence 578899999999999999999999999997 58999999999999999999999999999999999887753211
Q ss_pred CCCCCCCCCC-cccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhC
Q 010480 188 GKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEF 266 (509)
Q Consensus 188 ~~~~~~~~~~-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~f 266 (509)
.....|++ |+|++++|++ +||+++|+++||+.||+||+|+.+|++|++|++. +.|.+|+.++++|++|||++|
T Consensus 79 --~~~~~p~~~~~tl~~~l~~-~di~~~~~~~~l~~la~~~~~~~~~~~L~~l~~~---~~~~~~~~~~~~~~ldvL~~f 152 (393)
T 4dql_A 79 --KLAHLPLAKTVSVEELLQY-VELQDPVTRTQLRAMAAKTVCPPHKVELEALLEK---QAYKEQVLAKRLTMLELLEKY 152 (393)
T ss_dssp ----------CCEEHHHHTTS-BCSSSBCCHHHHHHHHHTCCSHHHHHHHHHTTSH---HHHHHHTTTTTCBHHHHHHHC
T ss_pred --ccccCCCCCcEEHHHHHHh-ccccCCCCHHHHHHHHHhCCCHHHHHHHHHHhCc---hHHHHHHhccCCCHHHHHHhC
Confidence 01123566 8999999999 9999999999999999999999999999999974 379999999999999999999
Q ss_pred CCCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCc-cccCcCchhhhhcCCCccCCCCceeeEE
Q 010480 267 PSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGR-VHKGLCSTWMKNSLPMEKSNDCSWAPIF 345 (509)
Q Consensus 267 ps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~-~~~G~~S~~L~~~~~~~~~~~~~~v~v~ 345 (509)
|++++|+++|+++ +|+++||+|||||+|..+++.++|+|+++.+.+..++ .+.|.||+||+++.+|+ .+.++
T Consensus 153 ps~~~p~~~~l~~-lp~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~G~~S~~L~~l~~Gd------~v~v~ 225 (393)
T 4dql_A 153 PACEMKFSEFIAL-LPSIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGD------TITCF 225 (393)
T ss_dssp TTCCCCHHHHHHT-SCBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSSSEEECHHHHHHHHCCTTC------EEEEE
T ss_pred CCCCCCHHHHHHh-CCCCcceeeeccccccccCceEEEEEEEEecccCCCCcccCCccchhHHhCCCcC------EEEEE
Confidence 9999999999986 5999999999999998777899999999877665543 46799999999976654 36655
Q ss_pred E--ecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCe
Q 010480 346 V--RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQ 423 (509)
Q Consensus 346 ~--~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~ 423 (509)
+ |.|.|.+|.+..+|+||||+|||||||+||++++......+...++++||||||++..|++|++||++|.+.+.+ +
T Consensus 226 v~~P~g~F~lp~~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~l-~ 304 (393)
T 4dql_A 226 ISTPQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSEGII-T 304 (393)
T ss_dssp EECCSSCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSC-E
T ss_pred EEcCCCCcccCccCCCCeEEEccCceechHHHHHHHHHHHHhcCCCCCCEEEEEEECCcchhhHHHHHHHHHHhCCCe-E
Confidence 4 468999998888999999999999999999999866544444457899999999964499999999999988765 7
Q ss_pred EEEEEec-CCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Q 010480 424 LIVAFSR-EGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTG 502 (509)
Q Consensus 424 ~~~a~Sr-~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~ 502 (509)
++++||| ++..++|||+++.++.+.+++++.++++||||||++.|.++|.++|.+++.+++++++++|++|+++|+++|
T Consensus 305 l~~a~Sr~~~~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~ 384 (393)
T 4dql_A 305 LHTAFSRMPNQPKTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKG 384 (393)
T ss_dssp EEEEESSCTTSCCCCHHHHHHHTHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCCCcchhhHHHhCHHHHHHHHhCCcEEEEECCchhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC
Confidence 9999999 566799999999999889999888899999999977899999999999999999999999999999999999
Q ss_pred CeEEeeC
Q 010480 503 RYLRDVW 509 (509)
Q Consensus 503 Ry~~dvw 509 (509)
||++|||
T Consensus 385 Ry~~dv~ 391 (393)
T 4dql_A 385 RYAKDVW 391 (393)
T ss_dssp CEEEEEE
T ss_pred CEEEEec
Confidence 9999999
No 7
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=100.00 E-value=1.5e-78 Score=635.81 Aligned_cols=396 Identities=34% Similarity=0.639 Sum_probs=346.8
Q ss_pred ccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCC-CCccCCCCeeEEcccCCHHHHHHHHHHhCC--CCCcEEEEecC
Q 010480 104 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGT-GLTYETGDHVGVYCENLSETVEEALSLLGL--SPDTYFSLHTD 180 (509)
Q Consensus 104 ~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~-~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l--~~~~~~~~~~~ 180 (509)
++.++|+.|+|++|++|+.++++|+|+||+|+++++ +++|+|||+|+|+|.|+++.|+++|++||+ ++|+.|++...
T Consensus 25 ~~~~~~~~a~v~~~~~l~~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~d~~v~~~~~ 104 (435)
T 1f20_A 25 VHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEML 104 (435)
T ss_dssp HHTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHTTBSSCCCTTSCEEEEEE
T ss_pred cccCCcEEEEEEeEEECCCCCCCceEEEEEEECCCCCCCcCCCCCEEEEEecCCHHHHHHHHHHhCCCCCCCeEEEEecc
Confidence 556889999999999999999999999999999765 799999999999999999999999999976 67899988642
Q ss_pred CCCCCCCC---CCCCCCCCCcccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCC
Q 010480 181 KEDGTPLG---KSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQR 257 (509)
Q Consensus 181 ~~~~~~~~---~~~~~~~~~~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~ 257 (509)
.+...+.+ ....+.++||+|++++|++|+||+++|++.||+.||+||+|+.||++|++|++ ++++|.+|+...++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~p~~tl~~~l~~~~di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~ 182 (435)
T 1f20_A 105 EERNTALGVISNWKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSK--GLQEYEEWKWGKNP 182 (435)
T ss_dssp EEESSSTTCEEEEEECCSSCSBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHHHHHHHHHHTT--CSHHHHHHHHHHCC
T ss_pred ccccCCCCccccccccCCCCCccHHHHHHhceecCCCCCHHHHHHHHHHCCCHHHHHHHHHhhc--CHHHHHHHHhccCC
Confidence 11111111 01124567799999999999999999999999999999999999999999996 77899999999999
Q ss_pred CHHHHHhhCCCCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCC--ccccCcCchhhhhcCCCcc
Q 010480 258 SLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTG--RVHKGLCSTWMKNSLPMEK 335 (509)
Q Consensus 258 ~~~dvl~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~--~~~~G~~S~~L~~~~~~~~ 335 (509)
+++|||.+||++++|+++++.. +|++++|+|||||+|..+++.++|+|+++.+.++.+ +.+.|.||+||+++.+|+
T Consensus 183 ~i~~vl~~fps~~~p~~~l~~~-lp~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd- 260 (435)
T 1f20_A 183 TMVEVLEEFPSIQMPATLLLTQ-LSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADD- 260 (435)
T ss_dssp CHHHHHHHSTTBCBCHHHHHHH-SCBCCCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTTC-
T ss_pred CHHHHHHhCCcCCCCHHHHHHh-CCCCCCccccccCCcccCCCeEEEEEEEEEEecCCCCCcccCCccchhHhhCCCCC-
Confidence 9999999999999999999986 599999999999999866789999999887766543 567899999999876654
Q ss_pred CCCCceeeEEEe-cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHh-hcCCCCCeEEEEeccCCCCccccHHHHH
Q 010480 336 SNDCSWAPIFVR-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQE-AGAELGPSLLFFGCRNRKMDYIYEDELN 413 (509)
Q Consensus 336 ~~~~~~v~v~~~-~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~-~~~~~~~~~L~~G~R~~~~d~ly~~el~ 413 (509)
.+.|.++ +|.|.+|.+..+|+||||+|||||||+||++++..... .+...++++||||||+++.|++|++||+
T Consensus 261 -----~v~v~~~~~g~F~lp~~~~~piilIagGtGIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~El~ 335 (435)
T 1f20_A 261 -----VVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETL 335 (435)
T ss_dssp -----EEEEEEECCTTSSCCSCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHHH
T ss_pred -----EEEEEEecCCCccCCCCCCCCEEEEECCcCcHHHHHHHHHHHHhhhhccCCCCCEEEEEeecccccchhHHHHHH
Confidence 4788885 57999998778999999999999999999999986421 1223478999999999976899999999
Q ss_pred HHHHcCCcCeEEEEEecCCCC-cccchhhHhhc-HHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHH
Q 010480 414 NFVQSGALSQLIVAFSREGPT-KEYVQHKMMEK-SSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSK 490 (509)
Q Consensus 414 ~~~~~~~~~~~~~a~Sr~~~~-~~yvq~~i~~~-~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~ 490 (509)
+|.+.+.+++++++|||++.. ++|||++|.++ .+.+++++ ..+++|||||| +.|+++|.++|.+++.+++++++++
T Consensus 336 ~~~~~~~~~~l~~a~Sr~~~~~k~yVq~~l~~~l~~~~~~~l~~~~~~vYvCGp-~~M~~~V~~~L~~i~~~~~~~~~~~ 414 (435)
T 1f20_A 336 QAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGD-VTMAADVLKAIQRIMTQQGKLSEED 414 (435)
T ss_dssp HHHHTTSEEEEEEEESSCTTSCCCCHHHHHHHHSHHHHHHHHHTSCCEEEEEEC-HHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHcCCccEEEEEECCCCCCCCcchhhHHHhhhHHHHHHHHhcCCcEEEEeCC-hhHHHHHHHHHHHHHHHcCCCCHHH
Confidence 999988887899999998654 89999999887 67777766 56899999999 7899999999999999999999999
Q ss_pred HHHHHHHHHHCCCeEEeeC
Q 010480 491 AESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 491 a~~~~~~l~~~~Ry~~dvw 509 (509)
|++|+++|+++|||++|||
T Consensus 415 a~~~~~~l~~~~RY~~Dv~ 433 (435)
T 1f20_A 415 AGVFISRLRDDNRYHEDIF 433 (435)
T ss_dssp HHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHCCCEEEEec
Confidence 9999999999999999999
No 8
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=100.00 E-value=9.4e-77 Score=610.66 Aligned_cols=367 Identities=31% Similarity=0.571 Sum_probs=332.6
Q ss_pred cccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCCcEEEEecCCC
Q 010480 103 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 182 (509)
Q Consensus 103 ~~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~ 182 (509)
.++.++|+.|+|++|++||.++++++|+||+|++++++++|+|||+|+|+|+|+++.|+++|++||+++++.|++.
T Consensus 5 ~~~~~~~~~a~v~~~~~lt~~~~~~~~~hi~~~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~~~~~v~~~---- 80 (374)
T 1ddg_A 5 PYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVE---- 80 (374)
T ss_dssp CCBTTBCEEEEEEEEEECSCTTCSSEEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCSCSEEEET----
T ss_pred CCCCCCCEEEEEEEEEEeCCCCCCceEEEEEEEcCCCCcccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCceEEEC----
Confidence 4567889999999999999999999999999999888999999999999999999999999999999999998874
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 010480 183 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 262 (509)
Q Consensus 183 ~~~~~~~~~~~~~~~~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dv 262 (509)
+ .++|++++|++|+||+ +|++.||+.||+||+|++ |.+|++ +++.|.+|+. +++++||
T Consensus 81 -~------------~~~tl~~~l~~~~di~-~p~~~~l~~la~~~~~~~----L~~l~~--~~~~~~~~~~--~~~~~~v 138 (374)
T 1ddg_A 81 -G------------KTLPLNEALQWHFELT-VNTANIVENYATLTRSET----LLPLVG--DKAKLQHYAA--TTPIVDM 138 (374)
T ss_dssp -T------------EEEEHHHHHHHHBCCS-CCCHHHHHHHHHHHTCTT----TGGGTT--CTHHHHHHHH--HSCHHHH
T ss_pred -C------------CCccHHHHHHhcccCC-CCCHHHHHHHHHHCCCHH----HHHHhc--ChHHHHHHHc--CCCHHHH
Confidence 1 1789999999999999 899999999999999974 888884 6788999987 4899999
Q ss_pred HhhCCCCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCce
Q 010480 263 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSW 341 (509)
Q Consensus 263 l~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~ 341 (509)
|.+||+ ++++|||+++. +++.+|+|||||+|..+++.++|+|+++.+.++ ++.+.|.||+||++ +.+|+ .
T Consensus 139 l~~~p~-~~~~Gq~v~l~-~~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~-~~~~~G~~S~~L~~~l~~Gd------~ 209 (374)
T 1ddg_A 139 VRFSPA-QLDAEALINLL-RPLTPRLYSIASSQAEVENEVHVTVGVVRYDVE-GRARAGGASSFLADRVEEEG------E 209 (374)
T ss_dssp HHHSCC-CCCHHHHHHHS-CBCCCEEEEBCCCTTTSCSEEEEEEEECEEEET-TEEEECHHHHHHHHSCCSSC------E
T ss_pred HHHCCC-CCCHHHHHhhc-cCCCCccceecCCCCCCCCEEEEEEEEEEeecC-CCCCCCCchHHHHhcCCCCC------E
Confidence 999999 99999999864 889999999999998657899999999877665 66778999999998 65543 4
Q ss_pred eeEEEe-cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCC
Q 010480 342 APIFVR-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA 420 (509)
Q Consensus 342 v~v~~~-~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~ 420 (509)
+.|.++ +|.|.+|.+..+|+||||+|||||||+||++++...+. .++++||||||+++.|++|++||++|.+.+.
T Consensus 210 v~v~~~~~g~F~lp~~~~~piimIa~GtGIAP~~s~l~~~~~~~~----~~~~~L~~G~R~~~~d~ly~~El~~~~~~~~ 285 (374)
T 1ddg_A 210 VRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEA----PGKNWLFFGNPHFTEDFLYQVEWQRYVKEGV 285 (374)
T ss_dssp EEEEEECCTTSCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHTC----CSCEEEEEEESCHHHHCTTHHHHHHHHHTTS
T ss_pred EEEEEeeCCCccCCCCCCCCEEEEECCccHHHHHHHHHHHHhcCC----CCCEEEEEEeCCchhhhhHHHHHHHHHHhCC
Confidence 788885 56999998778999999999999999999999986532 3789999999998339999999999999888
Q ss_pred cCeEEEEEecCCCCcccchhhHhhcHHHHHHHHhCCCEEEEec-CCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 010480 421 LSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCG-DAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQ 499 (509)
Q Consensus 421 ~~~~~~a~Sr~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCG-p~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~ 499 (509)
+++++++|||+++.++|||++|.++.+.+++++.++++||||| | ++|+++|.++|.+++.+++++++++|++|+++|+
T Consensus 286 ~~~l~~a~Srd~~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCG~p-~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~ 364 (374)
T 1ddg_A 286 LTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDA-NRMAKDVEQALLEVIAEFGGMDTEAADEFLSELR 364 (374)
T ss_dssp CCEEEEEETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEECT-TTHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred CcEEEEEEecCCCCCccHHHHHHHhHHHHHHHHhCCcEEEEECCC-HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 8899999999988899999999998888888887789999999 7 8999999999999999999999999999999999
Q ss_pred HCCCeEEeeC
Q 010480 500 MTGRYLRDVW 509 (509)
Q Consensus 500 ~~~Ry~~dvw 509 (509)
++|||++|||
T Consensus 365 ~~~Ry~~dv~ 374 (374)
T 1ddg_A 365 VERRYQRDVY 374 (374)
T ss_dssp HTTCEEEEEC
T ss_pred HCCCeEEecC
Confidence 9999999999
No 9
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=100.00 E-value=1.3e-38 Score=320.66 Aligned_cols=271 Identities=24% Similarity=0.449 Sum_probs=218.3
Q ss_pred cCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCCcEEEEecCCCCC
Q 010480 105 DAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDG 184 (509)
Q Consensus 105 ~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~ 184 (509)
+...++.++|+.+++++..++.+++++|+|+.++ .+.|+||+++.|.++|.. .
T Consensus 33 ~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~~~------------------------~-- 85 (314)
T 1fnb_A 33 KPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEG-EIPYREGQSVGVIPDGED------------------------K-- 85 (314)
T ss_dssp BTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTT-CCCCCTTCEEEEECSSBC------------------------T--
T ss_pred CCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCC-CCCcCCCCEEEEecCCCC------------------------c--
Confidence 3456788999999999988888899999999875 488999999999876421 0
Q ss_pred CCCCCCCCCCCCCcccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHh
Q 010480 185 TPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMS 264 (509)
Q Consensus 185 ~~~~~~~~~~~~~~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~ 264 (509)
.|
T Consensus 86 ----------------------------------------------------------~g-------------------- 87 (314)
T 1fnb_A 86 ----------------------------------------------------------NG-------------------- 87 (314)
T ss_dssp ----------------------------------------------------------TS--------------------
T ss_pred ----------------------------------------------------------CC--------------------
Confidence 00
Q ss_pred hCCCCCCChhhhHHhhcCCCCCccccccCCCCC---CCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCce
Q 010480 265 EFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV---APSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSW 341 (509)
Q Consensus 265 ~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~---~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~ 341 (509)
.+..+|+|||+|+|.. .++.++|+|+.+.+.++.++.+.|.+|+||+++.+|+ .
T Consensus 88 -----------------~~~~~R~ySi~s~p~~~~~~~~~~~l~Vk~~~y~~~~g~~~~G~~S~~L~~l~~Gd------~ 144 (314)
T 1fnb_A 88 -----------------KPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGA------E 144 (314)
T ss_dssp -----------------SBCCCEEEECCSCSSCTTSSSCEEEEEEECCEEECTTSCEEECHHHHHHHHCCTTC------E
T ss_pred -----------------CcCCceeEecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCCchhhHhhcCCCCC------E
Confidence 0136899999999863 2578999998876665556667899999999976654 4
Q ss_pred eeEEEecCCCC-CCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhc-CCCCCeEEEEeccCCCCccccHHHHHHHHHcC
Q 010480 342 APIFVRQSNFK-LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNFVQSG 419 (509)
Q Consensus 342 v~v~~~~g~F~-lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~-~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~ 419 (509)
+.|.+|.|.|. ++.+..+|+||||+|||||||++|++++......+ ...++++||||||+.+ |++|.+||+++.+.+
T Consensus 145 v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~el~~l~~~~ 223 (314)
T 1fnb_A 145 VKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKEKA 223 (314)
T ss_dssp EEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCBTTBCCCSEEEEEEEESSGG-GCCSHHHHHHHHHHC
T ss_pred EEEEeccCCceeCCCCCCCCEEEEeCCccHHHHHHHHHHHHHhccccccCCCCEEEEEecCCHH-HhhhHHHHHHHHHhC
Confidence 78888888764 55545689999999999999999999987532111 0126799999999997 999999999998876
Q ss_pred C-cCeEEEEEecCCC----CcccchhhHhhcHHHHHHHHh-CCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHH
Q 010480 420 A-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAES 493 (509)
Q Consensus 420 ~-~~~~~~a~Sr~~~----~~~yvq~~i~~~~~~v~~~l~-~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~ 493 (509)
. .+++++++||++. .++||+++|.+....+++.+. .++.||+||| ++|+++|.++|.+++.+.+ . +|++
T Consensus 224 ~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~~~~~g-~---~~~~ 298 (314)
T 1fnb_A 224 PDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGL-KGMEKGIDDIMVSLAAAEG-I---DWIE 298 (314)
T ss_dssp TTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHTTSTTEEEEEEEC-TTHHHHHHHHHHHHHHTTT-C---CHHH
T ss_pred CCcEEEEEEECCCCcccCCCceechHHHHHhHHHHHHHHhcCCeEEEEECC-HHHHHHHHHHHHHHHHHhC-c---hHHH
Confidence 4 5689999998643 578999999887666666553 5789999999 8999999999999998765 3 5789
Q ss_pred HHHHHHHCCCeEEeeC
Q 010480 494 MVKNLQMTGRYLRDVW 509 (509)
Q Consensus 494 ~~~~l~~~~Ry~~dvw 509 (509)
|+++|+++|||++|||
T Consensus 299 ~~~~l~~~~r~~~d~~ 314 (314)
T 1fnb_A 299 YKRQLKKAEQWNVEVY 314 (314)
T ss_dssp HHHHHHHTTCEEEEEC
T ss_pred HHHHHHHCCcEEEecC
Confidence 9999999999999999
No 10
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=100.00 E-value=3.3e-38 Score=316.29 Aligned_cols=272 Identities=25% Similarity=0.442 Sum_probs=217.7
Q ss_pred cCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCCcEEEEecCCCCC
Q 010480 105 DAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDG 184 (509)
Q Consensus 105 ~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~ 184 (509)
+...++.++|+++++|+..++.+++++++|++++..+.|+||+++.|.++|... .
T Consensus 17 ~~~~~~~~~V~~~~~l~~~~~~~~v~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~------------------------~- 71 (304)
T 2bmw_A 17 RPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDK------------------------N- 71 (304)
T ss_dssp BTTBCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECSSBCT------------------------T-
T ss_pred CCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCCccccCCCCEEEEEcCCCcc------------------------c-
Confidence 345678899999999998889999999999987656899999999998876310 0
Q ss_pred CCCCCCCCCCCCCcccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHh
Q 010480 185 TPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMS 264 (509)
Q Consensus 185 ~~~~~~~~~~~~~~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~ 264 (509)
|
T Consensus 72 -----------------------------------------------------------g-------------------- 72 (304)
T 2bmw_A 72 -----------------------------------------------------------G-------------------- 72 (304)
T ss_dssp -----------------------------------------------------------S--------------------
T ss_pred -----------------------------------------------------------C--------------------
Confidence 0
Q ss_pred hCCCCCCChhhhHHhhcCCCCCccccccCCCCC---CCCeEEEEEEEEEeeCCC-CccccCcCchhhhhcCCCccCCCCc
Q 010480 265 EFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV---APSRIHVTCALVYEKTPT-GRVHKGLCSTWMKNSLPMEKSNDCS 340 (509)
Q Consensus 265 ~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~---~~~~l~ltv~~v~~~~~~-~~~~~G~~S~~L~~~~~~~~~~~~~ 340 (509)
.+..+|+|||+|+|.. .++.++|+|+.+.+.++. +..+.|.+|+||+++.+|+
T Consensus 73 -----------------~~~~~R~ySias~~~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~Gd------ 129 (304)
T 2bmw_A 73 -----------------KPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGS------ 129 (304)
T ss_dssp -----------------CBCCCEEEEBCSCTTTTTTSSSEEEEEEECCEECSSSSSSCEECHHHHHHHTCCTTC------
T ss_pred -----------------CCCCCcceecCCCCcccCCCCCEEEEEEEEEEeeccccCcCCCcchhhHHhcCCCCC------
Confidence 0136899999999852 357899999876555432 3345799999999976654
Q ss_pred eeeEEEecCCC-CCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhh--c---CCCCCeEEEEeccCCCCccccHHHHHH
Q 010480 341 WAPIFVRQSNF-KLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEA--G---AELGPSLLFFGCRNRKMDYIYEDELNN 414 (509)
Q Consensus 341 ~v~v~~~~g~F-~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~--~---~~~~~~~L~~G~R~~~~d~ly~~el~~ 414 (509)
.+.|.+|.|.| .++.+..+|+||||+|||||||+||+++++..... + ...++++||||||+.+ |++|.+||++
T Consensus 130 ~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~v~l~~g~r~~~-d~~~~~el~~ 208 (304)
T 2bmw_A 130 EVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTP-NILYKEELEE 208 (304)
T ss_dssp EEEEEEEECSSSCCCSCTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEEEEESSGG-GCTTHHHHHH
T ss_pred EEEEEeccCCceeCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhhhcccccccCCCEEEEEEeCChH-hcchHHHHHH
Confidence 47888888875 45655578999999999999999999998754311 0 0136899999999987 9999999999
Q ss_pred HHHcCC-cCeEEEEEecCCC----CcccchhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCH
Q 010480 415 FVQSGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDS 488 (509)
Q Consensus 415 ~~~~~~-~~~~~~a~Sr~~~----~~~yvq~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~ 488 (509)
+.+.+. .++++.++||++. .++|||+++.+..+.+++++ ..++.||+||| ++|+++|+++|.+++.+.+ .+
T Consensus 209 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~l~~~~~~l~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~~~~~g-~~- 285 (304)
T 2bmw_A 209 IQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGP-PPMEEGIDAALSAAAAKEG-VT- 285 (304)
T ss_dssp HHHHCTTTEEEEEEETTTCBCTTSSBCCHHHHHHHTHHHHHHHHTSTTEEEEEEEC-TTHHHHHHHHHHHHHHTTT-CC-
T ss_pred HHHhCCCcEEEEEEEcCCCCCCCCCcceehHHHHHhHHHHHHHhhcCCcEEEEECC-HHHHHHHHHHHHHHHHHcC-cc-
Confidence 988754 5689999999742 57899999988777777665 34689999999 8999999999999998754 43
Q ss_pred HHHHHHHHHHHHCCCeEEeeC
Q 010480 489 SKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 489 ~~a~~~~~~l~~~~Ry~~dvw 509 (509)
+++++++|+++|||++|||
T Consensus 286 --~~~~~~~m~~~~ry~~e~~ 304 (304)
T 2bmw_A 286 --WSDYQKDLKKAGRWHVETY 304 (304)
T ss_dssp --HHHHHHHHHHTTCEEEEEC
T ss_pred --HHHHHHHHHHcCCeEEecC
Confidence 6789999999999999999
No 11
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}
Probab=100.00 E-value=7e-37 Score=317.79 Aligned_cols=272 Identities=25% Similarity=0.422 Sum_probs=218.7
Q ss_pred cCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCCcEEEEecCCCCC
Q 010480 105 DAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDG 184 (509)
Q Consensus 105 ~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~ 184 (509)
....++.++|+++++++.+++.+++++|+|+.++..+.|+||+++.|.+++..
T Consensus 118 ~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~--------------------------- 170 (402)
T 2b5o_A 118 RPKTPFLGKCIENYELVDEGGSGTVRHVTFDISEGDLRYLEGQSIGIIPPGED--------------------------- 170 (402)
T ss_dssp CSSSCEEEEEEEEEECSCTTCCSCEEEEEEECTTSCCCCCTTCEEEEECSSEE---------------------------
T ss_pred cCCCCEEEEEEEEEEcCCCCCCCcEEEEEEECCCCCCCcCCCCEEEEEecCCC---------------------------
Confidence 44567899999999999888889999999998754589999999998766411
Q ss_pred CCCCCCCCCCCCCcccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHh
Q 010480 185 TPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMS 264 (509)
Q Consensus 185 ~~~~~~~~~~~~~~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~ 264 (509)
. .|
T Consensus 171 --------------------------~-------------------------------~g-------------------- 173 (402)
T 2b5o_A 171 --------------------------K-------------------------------NG-------------------- 173 (402)
T ss_dssp --------------------------T-------------------------------TT--------------------
T ss_pred --------------------------c-------------------------------CC--------------------
Confidence 0 00
Q ss_pred hCCCCCCChhhhHHhhcCCCCCccccccCCCCC---CCCeEEEEEEEEEeeCCC-CccccCcCchhhhhcCCC-ccCCCC
Q 010480 265 EFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV---APSRIHVTCALVYEKTPT-GRVHKGLCSTWMKNSLPM-EKSNDC 339 (509)
Q Consensus 265 ~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~---~~~~l~ltv~~v~~~~~~-~~~~~G~~S~~L~~~~~~-~~~~~~ 339 (509)
.+..+|+|||+|+|.. +++.++|+|+.+.+.++. ++.+.|.+|+||+++.+| +.
T Consensus 174 -----------------~~~~~R~ySIas~p~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~G~d~---- 232 (402)
T 2b5o_A 174 -----------------KPHKLRLYSIASTRHGDMEDNKTVSLCVRQLEYQDPESGETVYGVCSTYLCNLPVGTDD---- 232 (402)
T ss_dssp -----------------EECCCEEEEBCSCTTTTTTSSCEEEEEEECCEEECTTTCCEEECHHHHHHHTCCTTCCC----
T ss_pred -----------------CccCceeeeccCCCccccCCCCEEEEEEEEeeecccccCcCCCCchhHHHhhCCCCCce----
Confidence 0136899999999863 257899999876554432 344679999999997665 43
Q ss_pred ceeeEEEecCCC-CCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhc-CCCCCeEEEEeccCCCCccccHHHHHHHHH
Q 010480 340 SWAPIFVRQSNF-KLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNFVQ 417 (509)
Q Consensus 340 ~~v~v~~~~g~F-~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~-~~~~~~~L~~G~R~~~~d~ly~~el~~~~~ 417 (509)
+.|..|.|.| .++.+..+|+||||+|||||||++|+++++.....+ ...++++||||||+.+ |++|.+||+++.+
T Consensus 233 --v~v~gP~G~~~~l~~~~~~~vvlIAgGtGIaP~~s~l~~l~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~eL~~l~~ 309 (402)
T 2b5o_A 233 --VKITGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMFKEQHEDYKFKGKAWLIFGVPYTA-NILYKDDFEKMAA 309 (402)
T ss_dssp --EEEEEEECSTTCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCCSSCCCCSEEEEEEEESSGG-GCTTHHHHHHHHH
T ss_pred --EEEEcccCCcccCCccCCCCEEEEEcccCHHHHHHHHHHHHHhccccccccCCEEEEEecCCHH-HhHHHHHHHHHHH
Confidence 6788888876 466556789999999999999999999987532110 0136899999999997 9999999999988
Q ss_pred cCC-cCeEEEEEecCCC----CcccchhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHH
Q 010480 418 SGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKA 491 (509)
Q Consensus 418 ~~~-~~~~~~a~Sr~~~----~~~yvq~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a 491 (509)
.+. .+++++++||++. .++||+++|.+..+.+++++ ..+++||+||| ++|+++|.++|.+++.+.+. .+
T Consensus 310 ~~~~~~~v~~~~S~~~~~~~g~~~~v~~~l~~~~~~l~~~l~~~~~~vyvCGP-~~M~~~v~~~L~~~g~~~g~----~~ 384 (402)
T 2b5o_A 310 ENPDNFRLTYAISREQKTADGGKVYVQSRVSEYADELFEMIQKPNTHVYMCGL-KGMQPPIDETFTAEAEKRGL----NW 384 (402)
T ss_dssp HCTTTEEEEEEETTTCBCTTSCBCCHHHHHHHTHHHHHHHHTSTTEEEEEEEC-GGGHHHHHHHHHHHHHHTTC----CH
T ss_pred hCCCcEEEEEEECCCCcccCCCccchHHHHHHhHHHHHHHhccCCcEEEEECC-HHHHHHHHHHHHHHHHHcCc----hH
Confidence 765 6689999999742 57899999998777777766 35789999999 89999999999999988764 57
Q ss_pred HHHHHHHHHCCCeEEeeC
Q 010480 492 ESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 492 ~~~~~~l~~~~Ry~~dvw 509 (509)
.+++++|+++|||++|||
T Consensus 385 ~~~~~~m~~~~Ry~~e~~ 402 (402)
T 2b5o_A 385 EEMRRSMKKEHRWHVEVY 402 (402)
T ss_dssp HHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHCCCEEEecC
Confidence 889999999999999999
No 12
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=100.00 E-value=5.4e-37 Score=308.30 Aligned_cols=227 Identities=26% Similarity=0.442 Sum_probs=187.4
Q ss_pred CChhhhHHhhcCCC-------CCccccccCCCCC---CCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCc
Q 010480 271 PPLGVFFAAIVPRL-------QPRYYSISSSPRV---APSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCS 340 (509)
Q Consensus 271 ~~~~~~l~~~~p~~-------~pR~YSIaSsp~~---~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~ 340 (509)
..+||++.+.+|.. .+|+|||+|+|.. +++.++|+|+.+.+.++.++.+.|.+|+||+++.+|+
T Consensus 66 ~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd------ 139 (310)
T 3vo2_A 66 YREGQSIGIIADGEDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGA------ 139 (310)
T ss_dssp CCTTCEEEEECSSBCTTSCBCCCEEEECCSCTTTTTTSSSEEEEEEECCEEECTTSCEEECHHHHHHHTCCTTC------
T ss_pred ccCCCEEEEECCCcCCCCCcCcceeeecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCcchhhHHhcCCCCC------
Confidence 45799987655542 5899999999963 3578999999876666667777899999999976654
Q ss_pred eeeEEEecCCCC-CCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhc-CCCCCeEEEEeccCCCCccccHHHHHHHHHc
Q 010480 341 WAPIFVRQSNFK-LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNFVQS 418 (509)
Q Consensus 341 ~v~v~~~~g~F~-lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~-~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~ 418 (509)
.+.|.+|.|.|. +|.+..+|+||||+|||||||++|+++++...... ...++++||||||+.+ |++|.+||+++.+.
T Consensus 140 ~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~-d~~~~~el~~l~~~ 218 (310)
T 3vo2_A 140 DVKITGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFLEEHEDYKFSGLAWLFLGVPTSD-SLLYKEELEKMKEM 218 (310)
T ss_dssp EEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHSSCCTTCCCCSEEEEEEEESSGG-GCCSHHHHHHHHHH
T ss_pred EEEEEeccCCcccCCCCCCCCEEEEeCCcchhHHHHHHHHHHHhhcccccCCCcEEEEEEecChh-hcccHHHHHHHHHh
Confidence 377888888765 55556789999999999999999999987532111 1126799999999997 99999999999988
Q ss_pred CC-cCeEEEEEecCCC----CcccchhhHhhcHHHHHHHHh-CCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHH
Q 010480 419 GA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAE 492 (509)
Q Consensus 419 ~~-~~~~~~a~Sr~~~----~~~yvq~~i~~~~~~v~~~l~-~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~ 492 (509)
+. .+++++++||++. .++|||+++.+..+.+++.+. .++.||+||| ++|+++|+++|.+++.+.+ . +++
T Consensus 219 ~~~~~~v~~~~sr~~~~~~g~~~~v~~~l~~~~~~l~~~l~~~~~~vyvCGp-~~M~~~v~~~L~~~~~~~g-~---~~~ 293 (310)
T 3vo2_A 219 APDNFRLDFAVSREQTNAAGEKMYIQTRMAEYREELWELLKKDNTYVYMCGL-KGMEKGIDDIMLNLAAKDG-I---DWM 293 (310)
T ss_dssp CTTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHHTSTTEEEEEEES-TTHHHHHHHHHHHHHHHTT-C---CHH
T ss_pred CCCCEEEEEEECCCCCCCCCcceehHHHHHHHHHHHHHhcccCCcEEEEeCC-HHHHHHHHHHHHHHHHHcC-c---CHH
Confidence 64 6689999999753 578999999988777887763 5899999999 8999999999999998865 3 588
Q ss_pred HHHHHHHHCCCeEEeeC
Q 010480 493 SMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 493 ~~~~~l~~~~Ry~~dvw 509 (509)
+|+++|+++|||++|||
T Consensus 294 ~~~~~l~~~~r~~~e~y 310 (310)
T 3vo2_A 294 QYKKQLKKGEQWNVEVY 310 (310)
T ss_dssp HHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHCCceEEecC
Confidence 99999999999999999
No 13
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=100.00 E-value=1e-35 Score=299.56 Aligned_cols=276 Identities=21% Similarity=0.326 Sum_probs=209.9
Q ss_pred CCCCeeEEEeeeeccCCCCCCCc---------EEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCCcEEE
Q 010480 106 AQHPCRSNVAVRKELHTPSSDRS---------CTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFS 176 (509)
Q Consensus 106 ~~~~~~a~v~~~~~L~~~~~~~~---------~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~ 176 (509)
...++.++|+.+++|+..++.++ +++|+|+.++..+.|+||+++.|.++|....
T Consensus 18 ~~~~~~~~V~~~~~lt~~~~~~~~~~~e~~~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~----------------- 80 (314)
T 2rc5_A 18 KSNPYKAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDHSAYPYVIGQSGGVIPPGEDPE----------------- 80 (314)
T ss_dssp TTBCEEEEEEEEEECSCCTTSSSCCSSSCCCCEEEEEEECCTTTCCCCTTCEEEEECSSBCHH-----------------
T ss_pred CCCCEEEEEEEeEEcCCccccccccccccCceEEEEEEeCCCCcCcccCCCEEEEECCCCccc-----------------
Confidence 34678899999999998767666 9999999875558999999999988764210
Q ss_pred EecCCCCCCCCCCCCCCCCCCcccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcC
Q 010480 177 LHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQ 256 (509)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~ 256 (509)
+. +. .+
T Consensus 81 -------g~------------~~--------------------------------------~~----------------- 86 (314)
T 2rc5_A 81 -------KK------------AK--------------------------------------GL----------------- 86 (314)
T ss_dssp -------HH------------HT--------------------------------------TC-----------------
T ss_pred -------cC------------cc--------------------------------------ch-----------------
Confidence 00 00 00
Q ss_pred CCHHHHHhhCCCCCCChhhhHHhhcCCCCCccccccCCCCC---CCCeEEEEEEEEEeeCCCCcc-ccCcCchhhhhcCC
Q 010480 257 RSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV---APSRIHVTCALVYEKTPTGRV-HKGLCSTWMKNSLP 332 (509)
Q Consensus 257 ~~~~dvl~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~---~~~~l~ltv~~v~~~~~~~~~-~~G~~S~~L~~~~~ 332 (509)
.+| ++.+|+|||+|+|.. +++.++|+|+++.+.++.|+. +.|.+|+||+++.+
T Consensus 87 -------~~~----------------~~~~R~ySi~s~p~~~~~~~~~l~l~vk~~~~~~~~g~~~~~G~~S~~L~~l~~ 143 (314)
T 2rc5_A 87 -------ADV----------------GYTVRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCDLKP 143 (314)
T ss_dssp -------SCC----------------BCCCEEEECCSCTTCGGGCCCEEEEEEECCBCC--CCSCSSBCHHHHHHHTCCT
T ss_pred -------hhc----------------CCCceeeeccCCccccCCCCCEEEEEEEEEeecCCCCCcCCCcchHHHHhcCCC
Confidence 011 157899999999852 357899999876444333332 46999999999666
Q ss_pred CccCCCCceeeEEEecCCCC-CCC-CCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHH
Q 010480 333 MEKSNDCSWAPIFVRQSNFK-LPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYED 410 (509)
Q Consensus 333 ~~~~~~~~~v~v~~~~g~F~-lp~-~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~ 410 (509)
|+ .+.|..|.|.|. ++. +..+|+||||+|||||||++|++++..... ....++++||||+|+.+ |++|.+
T Consensus 144 Gd------~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~l~~~~~-~~~~~~v~l~~g~r~~~-d~~~~~ 215 (314)
T 2rc5_A 144 GD------EVTMTGPSGKKFLLPNTDFSGDIMFLATGTGIAPFIGMSEELLEHKL-IKFTGNITLVYGAPYSD-ELVMMD 215 (314)
T ss_dssp TC------EEEEEEEECSSSCCCSSCBCSCEEEEEEGGGGHHHHHHHHHHHTTCS-SCBCSCEEEEEEESSGG-GSCSHH
T ss_pred cC------EEEEEeccCCceeCCCCCCCCCEEEEECCccHHHHHHHHHHHHHhcc-cCCCCcEEEEEEeCCHH-HHhHHH
Confidence 54 477888888865 444 357899999999999999999999875321 01136899999999998 999999
Q ss_pred HHHHHHHcCCcCeEEEEEecCC-----CCcccchhhHhhcHHHHHHHHhCCCEEEEe-cCCcchHHHHHHHHHHHHHHcC
Q 010480 411 ELNNFVQSGALSQLIVAFSREG-----PTKEYVQHKMMEKSSDIWNMLSEGAYLYVC-GDAKSMARDVHRTLHTIVQEQG 484 (509)
Q Consensus 411 el~~~~~~~~~~~~~~a~Sr~~-----~~~~yvq~~i~~~~~~v~~~l~~~~~iyvC-Gp~~~M~~~v~~~L~~i~~~~~ 484 (509)
||+++.+.+..+++++++||++ +.++||++++.+..+.+.+.+.....+|+| || ++|+++|++.|.+++. .
T Consensus 216 el~~l~~~~~~~~~~~~~s~~~~~~~~g~~~~v~~~l~~~~~~l~~~~~~~~~~yvCGGp-~~m~~~v~~~L~~~g~--~ 292 (314)
T 2rc5_A 216 YLKGLESKHKNFKLITAISREEKNSFDGGRMYISHRVREQAEAVKKILNGGGRFYICGGP-KGMEKGVIEEIQKISG--N 292 (314)
T ss_dssp HHHHHHHHHSSEEEEEEETTTCBCTTTSSBCCHHHHHHHTHHHHHHHHHHTCEEEEEESS-TTTHHHHHHHHHHHHT--C
T ss_pred HHHHHHHhCCcEEEEEEECCCCCcccCCCceehhHHHHHhHHHHHHHhhcCCeEEEeCCc-HHHHHHHHHHHHHHHh--c
Confidence 9999987644668999999873 246899999988766666655223345999 99 8999999999999876 2
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 485 SLDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 485 ~~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
++ .++.|+..|+++|||++|||
T Consensus 293 ~i---~~e~f~~~l~~~gr~~~e~~ 314 (314)
T 2rc5_A 293 TG---TYEEFKHHLEGAHQLFVETY 314 (314)
T ss_dssp CS---CHHHHHHHHHHTTCEEEEEC
T ss_pred cc---hHHHHHHHHHHCCCEEEecC
Confidence 33 46789999999999999999
No 14
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=100.00 E-value=9.4e-36 Score=299.41 Aligned_cols=228 Identities=27% Similarity=0.425 Sum_probs=181.9
Q ss_pred CCChhhhHHhhcCCC---------CCccccccCCCCC---CCCeEEEEEEEEEeeCCC----CccccCcCchhhhhcCCC
Q 010480 270 KPPLGVFFAAIVPRL---------QPRYYSISSSPRV---APSRIHVTCALVYEKTPT----GRVHKGLCSTWMKNSLPM 333 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~---------~pR~YSIaSsp~~---~~~~l~ltv~~v~~~~~~----~~~~~G~~S~~L~~~~~~ 333 (509)
...+|||+.+.+|.. .+|+|||+|+|.. +++.++|+|+.+.+..+. ++.+.|.+|+||+++.+|
T Consensus 60 ~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~G 139 (311)
T 3lo8_A 60 PYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPG 139 (311)
T ss_dssp CCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTTTTSSSEEEEEEECCCCCCTTTCCCCGGGSCHHHHHHHTCCTT
T ss_pred cccCCCEEEEeCCCCccccCCCCCCceeeEecCCCcccCCCCCEEEEEEEEEEecccccCcCCcCCCCchhhHHhcCCCc
Confidence 456899987766652 6899999999964 247899999875332222 123679999999997665
Q ss_pred ccCCCCceeeEEEecCCCCCCC--CCCCCEEEEccCCccchhHHHHHHHHHHHhhcCC-CCCeEEEEeccCCCCccccHH
Q 010480 334 EKSNDCSWAPIFVRQSNFKLPA--DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAE-LGPSLLFFGCRNRKMDYIYED 410 (509)
Q Consensus 334 ~~~~~~~~v~v~~~~g~F~lp~--~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~-~~~~~L~~G~R~~~~d~ly~~ 410 (509)
+ .+.|.+|.|.|.+.+ +..+|+||||||||||||++|+++++.....+.. .++++||||+|+.+ |++|.+
T Consensus 140 d------~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~l~~g~r~~~-d~~~~~ 212 (311)
T 3lo8_A 140 D------KIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSD-SLLYDE 212 (311)
T ss_dssp C------EEEEEEEECCTTCCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTEECTTCCCCSEEEEEEEESSGG-GCSSHH
T ss_pred C------EEEEEeccCCcccCCCcCCCCCEEEEECCEEHHHHHHHHHHHHHhccccccCCCCEEEEEecCChH-HhhHHH
Confidence 4 478888888876543 3578999999999999999999998754311111 25799999999997 999999
Q ss_pred HHHHHHHcCC-cCeEEEEEecCCC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCC
Q 010480 411 ELNNFVQSGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGS 485 (509)
Q Consensus 411 el~~~~~~~~-~~~~~~a~Sr~~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~ 485 (509)
||+++.+.+. .++++.++||++. .++||++.+.+..+.+++++..++.||+||| ++|+++|+++|.+++.+.+
T Consensus 213 el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~~~~~g- 290 (311)
T 3lo8_A 213 EFTSYLKQYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGL-KGMMPGIQDTLKKVAERRG- 290 (311)
T ss_dssp HHHHHHHHCTTTEEEEEEETTTC-------CCHHHHHHHTHHHHHHHHHTTCEEEEEEC-GGGHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhCCCcEEEEEEECCCCcccCCCcceehHHHHHHHHHHHHhhcCCcEEEEECC-HHHHHHHHHHHHHHHHhcc-
Confidence 9999998764 6689999999753 4789999999877777776667899999999 8999999999999998765
Q ss_pred CCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 486 LDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 486 ~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
++|++|+++|+++|||++|||
T Consensus 291 ---~~~~~~~~~l~~~~ry~~e~y 311 (311)
T 3lo8_A 291 ---ESWDQKLAQLKKNKQWHVEVY 311 (311)
T ss_dssp ---CCHHHHHHHHHHTTCEEEEEC
T ss_pred ---HHHHHHHHHHHHCCcEEEecC
Confidence 368899999999999999999
No 15
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=100.00 E-value=8.3e-34 Score=285.67 Aligned_cols=290 Identities=22% Similarity=0.349 Sum_probs=204.8
Q ss_pred ccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCCcEEEEecCCCC
Q 010480 104 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKED 183 (509)
Q Consensus 104 ~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~ 183 (509)
|..++|+.++|+.+.+|+.++...+|+||+|+.+ ..+.|.+|..++|.|+..+.. ...+
T Consensus 10 ~~~~~p~~~~v~~~~~l~~~~~~~~v~~~~~~~~-~~~~~~~GQ~~~i~~~~~~~~-----~~~~--------------- 68 (316)
T 3jqq_A 10 YTVKNPLKCKIVDKINLVRPNSPNEVYHLEINHN-GLFKYLEGHTCGIIPYYNELD-----NNPN--------------- 68 (316)
T ss_dssp SCSSSCEEEEEEEEEECSCTTCSCCEEEEEEECT-TCCCCCTTCEEEECTTCC---------------------------
T ss_pred ecCCCCEEEEEEeeEEccCCCCCCceEEEEEeCC-CCcceecCcEeEEECCCcccc-----cccc---------------
Confidence 4567899999999999999888889999999986 469999999999999876532 0000
Q ss_pred CCCCCCCCCCCCCCcccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHH
Q 010480 184 GTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVM 263 (509)
Q Consensus 184 ~~~~~~~~~~~~~~~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl 263 (509)
+ +.+. | . .++-++.- + .+..++
T Consensus 69 -~-----~~~~--~----~----~~~~~~~~------------~---------------------------~h~~~~--- 90 (316)
T 3jqq_A 69 -N-----QINK--D----H----NIINTTNH------------T---------------------------NHNNIA--- 90 (316)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -c-----cccc--c----c----cccccccc------------c---------------------------cccccc---
Confidence 0 0000 0 0 00100000 0 000000
Q ss_pred hhCCCCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCC---CCccccCcCchhhhhcCCCccCCCCc
Q 010480 264 SEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTP---TGRVHKGLCSTWMKNSLPMEKSNDCS 340 (509)
Q Consensus 264 ~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~---~~~~~~G~~S~~L~~~~~~~~~~~~~ 340 (509)
. . .+-+...+|+|||||+|.. +.++|+|+++.|..+ .++.+.|.+|+||+++.+|+
T Consensus 91 ------~------~-~~~g~~~~R~ySIaS~p~~--~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~Gd------ 149 (316)
T 3jqq_A 91 ------L------S-HIKKQRCARLYSISSSNNM--ENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKIND------ 149 (316)
T ss_dssp -------------------CCCCEEEEBCSCTTS--SSEEEEEECCBC---------CCBCHHHHHHHTCCTTC------
T ss_pred ------c------c-cCCCcccceeeecccCCCC--CeEEEEEEEEEecccccccCcCCCCchhHHHhhCCCCC------
Confidence 0 0 1124568999999999973 689999987644322 23456799999998877654
Q ss_pred eeeEEEecCCCCCCCC---CCCCEEEEccCCccchhHHHHHHHHHHHhh------cCCCCCeEEEEeccCCCCccccHHH
Q 010480 341 WAPIFVRQSNFKLPAD---AKVPIIMIGPGTGLAPFRGFLQERFALQEA------GAELGPSLLFFGCRNRKMDYIYEDE 411 (509)
Q Consensus 341 ~v~v~~~~g~F~lp~~---~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~------~~~~~~~~L~~G~R~~~~d~ly~~e 411 (509)
.+.|.+|.|.|.++.+ ..+|+||||||||||||+||++++...... +...++++||||+|+.+ |++|.+|
T Consensus 150 ~v~v~gP~G~f~l~~~~~~~~~~vvlIAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~e 228 (316)
T 3jqq_A 150 DIYLTGAHGYFNLPNDAIQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNED-SILYLNE 228 (316)
T ss_dssp EEEEEEEECCCCCCTTHHHHTCCEEEEEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGG-GCTTHHH
T ss_pred EEEEEecCCceEcCCcccCCCCcEEEEeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHH-HhhcHHH
Confidence 3788889999999875 378999999999999999999998754211 01237899999999998 9999999
Q ss_pred HHHHHHcCC-cCeEEEEEecCC---CCcccchhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCCC
Q 010480 412 LNNFVQSGA-LSQLIVAFSREG---PTKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSL 486 (509)
Q Consensus 412 l~~~~~~~~-~~~~~~a~Sr~~---~~~~yvq~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~ 486 (509)
|+++.+... .+++++++||++ +.++||++.+.+....+++++ ..++.||+||| ++|++++.++|.+.+ ++
T Consensus 229 L~~l~~~~~~~~~~~~~~s~~~~~~g~~g~V~~~l~~~~~~~~~~l~~~~~~vyvCGP-~~m~~~v~~~l~~~G----~~ 303 (316)
T 3jqq_A 229 LEYFQKMYPNNINIHYVFSYKQNSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGK-KSIRYKVMDILKSHD----QF 303 (316)
T ss_dssp HHHHHHHCTTTEEEEEEEGGGCC---CBCCHHHHHHHTHHHHHHHHHHTCCEEEEEEC-STHHHHHHHHHHC--------
T ss_pred HHHHHHhCCCcEEEEEEECCCcccCCCccchhHHHHHhHHHHHHhhccCCeEEEEeCC-HHHHHHHHHHHHHcC----CC
Confidence 999988754 568999999974 367999999998877777766 46899999999 899999998887654 22
Q ss_pred CHHHHHHHHHHHHHCCCeEEeeC
Q 010480 487 DSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 487 ~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
++ ...+|++.|+|
T Consensus 304 ~~----------v~~~rih~E~f 316 (316)
T 3jqq_A 304 DE----------KKKKRVHVEVY 316 (316)
T ss_dssp CH----------HHHTTEEEEEC
T ss_pred cc----------cccccEEEEeC
Confidence 22 24578998886
No 16
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=99.94 E-value=8.4e-27 Score=226.70 Aligned_cols=185 Identities=17% Similarity=0.259 Sum_probs=147.2
Q ss_pred CCChhhhHHhhcCC-CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhh-hcCCCccCCCCceeeEEEe
Q 010480 270 KPPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 270 ~~~~~~~l~~~~p~-~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~-~~~~~~~~~~~~~v~v~~~ 347 (509)
...+||++.+.+|. ..+|+|||+|+|.. .+.++|+|+.+ ..|.+|+||+ ++.+|+ .+.|..|
T Consensus 43 ~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~-~~~l~i~vk~~---------~~G~~s~~l~~~l~~Gd------~v~v~gP 106 (250)
T 1tvc_A 43 KFEPGQFMDLTIPGTDVSRSYSPANLPNP-EGRLEFLIRVL---------PEGRFSDYLRNDARVGQ------VLSVKGP 106 (250)
T ss_dssp SCCSCCEEEECTTSCSSSEEECCBCCSSS-SCCEEEEECCC---------TTSSSHHHHHHHSSSSS------EEEEEEE
T ss_pred CcCCCcEEEEEeCCCccccccccCCCCCC-CCeEEEEEEEC---------CCCCchHHHHhcCCCCC------EEEEEcC
Confidence 34689999766665 57899999999863 57899888643 3599999997 666554 4788889
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
.|.|.++.+..+++||||+|||||||++|++++...+ ...+++|+||+|+.+ |++|.+||+++.+.+..++++.+
T Consensus 107 ~G~~~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 181 (250)
T 1tvc_A 107 LGVFGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWT----APNETRIYFGVNTEP-ELFYIDELKSLERSMRNLTVKAC 181 (250)
T ss_dssp ECCCSCCCCSSSCEEEEEESSTTHHHHHHHHHHHHHT----CCSCEEEEEECSSST-TCCCHHHHHHHHHHSSSCEEEEC
T ss_pred ccccccCccCCceEEEEEeccCHHHHHHHHHHHHhcC----CCceEEEEEEeCCHH-HhhhHHHHHHHHHhCCCeEEEEE
Confidence 9999988665689999999999999999999987642 236899999999998 99999999999876666788888
Q ss_pred EecCCC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 428 FSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 428 ~Sr~~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+|+++. .++||++.+.+. +.+. ..+..||+||| ++|+++|++.|.+.+
T Consensus 182 ~s~~~~~~~g~~g~v~~~l~~~---~~~~-~~~~~vyvCGp-~~m~~~v~~~l~~~G 233 (250)
T 1tvc_A 182 VWHPSGDWEGEQGSPIDALRED---LESS-DANPDIYLCGP-PGMIDAACELVRSRG 233 (250)
T ss_dssp CSSCSSCCSSSSSSSSHHHHHH---HHHS-SSSSEEEEESS-HHHHHHHHHHHHHHC
T ss_pred eccCCCCcCCccceehHHHHhh---hhcc-cCCcEEEEeCC-HHHHHHHHHHHHHcC
Confidence 997532 567888877642 2221 25789999999 899999999987653
No 17
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=99.94 E-value=1.5e-26 Score=222.21 Aligned_cols=183 Identities=16% Similarity=0.194 Sum_probs=141.0
Q ss_pred CCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchh-hhhcCCCccCCCCceeeEEEec
Q 010480 270 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTW-MKNSLPMEKSNDCSWAPIFVRQ 348 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~-L~~~~~~~~~~~~~~v~v~~~~ 348 (509)
...+||++.+.+|...+|+|||+|+|.. ++.++|+|+++ ..|.+|++ +.++.+|+ .+.|..|.
T Consensus 29 ~~~pGq~v~l~~~~~~~R~ySi~s~~~~-~~~l~l~i~~~---------~~G~~s~~~~~~l~~Gd------~v~v~gP~ 92 (232)
T 1qfj_A 29 SFRAGQYLMVVMDERDKRPFSMASTPDE-KGFIELHIGAS---------EINLYAKAVMDRILKDH------QIVVDIPH 92 (232)
T ss_dssp CCCTTCEEEEESSSSCEEEEECCSCTTS-TTCEEEEEC---------------CCHHHHHHHHHHS------EEEEEEEE
T ss_pred CcCCCCEEEEECCCCceeeeecCCCCCC-CCcEEEEEEEc---------cCCchhHHHHHhCCCCC------EEEEeCCc
Confidence 4568999987677778999999999973 57899988754 23667776 45555543 37888899
Q ss_pred CCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEE
Q 010480 349 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 428 (509)
Q Consensus 349 g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~ 428 (509)
|.|.++.+..+++||||+|||||||++|++++...+ ...+++|+||+|+.+ |++|.+||+++++.+..++++.++
T Consensus 93 G~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 167 (232)
T 1qfj_A 93 GEAWLRDDEERPMILIAGGTGFSYARSILLTALARN----PNRDITIYWGGREEQ-HLYDLCELEALSLKHPGLQVVPVV 167 (232)
T ss_dssp CSCCCCSCSSSCEEEEEETTCHHHHHHHHHHHHHHC----TTCCEEEEEEESSGG-GCTTHHHHHHHHHHCTTEEEEEEE
T ss_pred cceEeCCCCCCcEEEEEecccHhHHHHHHHHHHhcC----CCCcEEEEEeeCCHH-HhhhHHHHHHHHHHCCCeEEEEEE
Confidence 999987665789999999999999999999987642 237899999999998 999999999998876667888899
Q ss_pred ecCCC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHH-HHH
Q 010480 429 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTL-HTI 479 (509)
Q Consensus 429 Sr~~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L-~~i 479 (509)
|+++. .++|+++.+.+.. .+ ..+..+|+||| ++|++++++.| .+.
T Consensus 168 s~~~~~~~g~~g~v~~~~~~~~---~~--~~~~~vyvCGp-~~m~~~v~~~l~~~~ 217 (232)
T 1qfj_A 168 EQPEAGWRGRTGTVLTAVLQDH---GT--LAEHDIYIAGR-FEMAKIARDLFCSER 217 (232)
T ss_dssp SSCCTTCCSEESCHHHHHHHHC---SC--CTTCEEEEESC-HHHHHHHHHHHHHHS
T ss_pred cCCCCCcCCceeeHHHHHHHhc---CC--ccccEEEEECC-HHHHHHHHHHHHHHc
Confidence 98643 3577877665421 01 24689999999 89999999988 553
No 18
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=99.93 E-value=2.1e-26 Score=228.80 Aligned_cols=182 Identities=18% Similarity=0.333 Sum_probs=137.5
Q ss_pred CCCccccccCCCCCCCCeEEEEEEEEEee--CC-C---CccccCcCchhhhhcCCCccCCCCceeeEEEecCCCCCCCCC
Q 010480 284 LQPRYYSISSSPRVAPSRIHVTCALVYEK--TP-T---GRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADA 357 (509)
Q Consensus 284 ~~pR~YSIaSsp~~~~~~l~ltv~~v~~~--~~-~---~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g~F~lp~~~ 357 (509)
..+|+|||+|+|.. .+.++|+|+++... +. . .+.+.|.+|+||+++.+|+ .+.|..|.|.|.++. .
T Consensus 84 ~~~R~ySi~s~~~~-~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~l~~Gd------~v~v~gP~G~f~~~~-~ 155 (290)
T 2r6h_A 84 ETVRAYSMANYPAE-GNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPGD------KVMMSGPYGDFHIQD-T 155 (290)
T ss_dssp CEEEEEECCSCTTC-CSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTTCCTTC------EEEEEEEECCCCCCS-S
T ss_pred CcceeeeccCCCCC-CCEEEEEEEEeccccccccccccccCCCcchhhHHhcCCCCC------EEEEEecccCCcCCC-C
Confidence 45799999999974 57899988753110 00 0 1134699999999976654 478888999999863 4
Q ss_pred CCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEecCCC----
Q 010480 358 KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP---- 433 (509)
Q Consensus 358 ~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~---- 433 (509)
.+++||||+|||||||++|+++++.... ...+++||||+|+.+ |++|.+||+++.+.+..++++.++||+..
T Consensus 156 ~~~~vliagGtGitP~~s~l~~~~~~~~---~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~ 231 (290)
T 2r6h_A 156 DAEMLYIGGGAGMAPLRAQILHLFRTLK---TGRKVSYWYGARSKN-EIFYEEDFREIEREFPNFKFHIALSDPQPEDNW 231 (290)
T ss_dssp SCEEEEEEEGGGHHHHHHHHHHHHHTSC---CCSCEEEEEEESSGG-GCCSHHHHHHHHHHCTTEEEEEEESSCCGGGCC
T ss_pred CCeEEEEECccCHHHHHHHHHHHHHhcC---CCCcEEEEEEcCCHH-HHHHHHHHHHHHHhCCCeEEEEEEccCCcccCC
Confidence 6899999999999999999999876421 236899999999997 99999999999887666789999998632
Q ss_pred --CcccchhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 434 --TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 434 --~~~yvq~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
.++||++.+.+. .+.+.. ..++.||+||| ++|+++|++.|.+.+
T Consensus 232 ~g~~g~v~~~~~~~--~l~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~G 278 (290)
T 2r6h_A 232 TGYVGFIHQVIYDN--YLKDHDAPEDIEYYMCGP-GPMANAVKGMLENLG 278 (290)
T ss_dssp CSCBSCHHHHHHHH--TTTTCSCGGGEEEEEECC-HHHHHHHHHHHHHHT
T ss_pred CCeeEecCHHHHHh--HHhhccCcCCcEEEEECC-HHHHHHHHHHHHHcC
Confidence 367888766432 011111 13578999999 899999999988754
No 19
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=99.93 E-value=1.1e-26 Score=224.76 Aligned_cols=186 Identities=17% Similarity=0.240 Sum_probs=143.0
Q ss_pred CChhhhHHhhcCC---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEe
Q 010480 271 PPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 271 ~~~~~~l~~~~p~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~ 347 (509)
..+||++.+.+|. ...|+|||+|.|. ..+.++|+|+.+ ..|.+|+||+++.+|+ .+.|..|
T Consensus 42 ~~pGq~v~l~~~~~g~~~~R~ysi~s~~~-~~~~~~l~vk~~---------~~G~~S~~l~~l~~Gd------~v~v~gP 105 (243)
T 2eix_A 42 LPIGQHMSVKATVDGKEIYRPYTPVSSDD-EKGYFDLIIKVY---------EKGQMSQYIDHLNPGD------FLQVRGP 105 (243)
T ss_dssp CCTTCEEEEEEEETTEEEEEEECCCSCTT-CCSEEEEEEECC---------TTCHHHHHHHTCCTTC------EEEEEEE
T ss_pred cCCceEEEEEEeeCCCEEEeeeeecCCCC-CCCEEEEEEEEc---------CCCCcchHhhcCCCCC------EEEEECC
Confidence 4689998765541 3579999999986 357899888643 3599999999876654 3778889
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
.|.|.++.+..++++|||+|||||||++|++++.... ....+++|+||+|+.+ |++|++||+++++.+..++++.+
T Consensus 106 ~G~f~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~---~~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 181 (243)
T 2eix_A 106 KGQFDYKPNMVKEMGMIAGGTGITPMLQVARAIIKNP---KEKTIINLIFANVNED-DILLRTELDDMAKKYSNFKVYYV 181 (243)
T ss_dssp ECSCCCCTTSSSEEEEEEEGGGHHHHHHHHHHHHTCT---TCCCEEEEEEEEEEGG-GCTTHHHHHHHHHHCTTEEEEEE
T ss_pred eEEEEeCCCCCcEEEEEecCccHHHHHHHHHHHHhCC---CCCcEEEEEEEcCCHH-HhhHHHHHHHHHHHCCCeEEEEE
Confidence 9999998665689999999999999999999987531 1236899999999997 99999999999887666688899
Q ss_pred EecCCC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 428 FSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 428 ~Sr~~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+|++.. .++||++.+.+. +......+..||+||| ++|+++|++.|.+.+
T Consensus 182 ~s~~~~~~~g~~g~v~~~~l~~---~~~~~~~~~~vy~CGp-~~m~~~v~~~l~~~G 234 (243)
T 2eix_A 182 LNNPPAGWTGGVGFVSADMIKQ---HFSPPSSDIKVMMCGP-PMMNKAMQGHLETLG 234 (243)
T ss_dssp EEECCTTCCSEESSCCHHHHHH---HSCCTTSSEEEEEESS-HHHHHHHHHHHHHHT
T ss_pred eCCCCccccCcCCccCHHHHHH---hcCCCCCCeEEEEECC-HHHHHHHHHHHHHcC
Confidence 987532 357787543221 0000124578999999 899999999987654
No 20
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=99.93 E-value=1.6e-26 Score=224.38 Aligned_cols=189 Identities=18% Similarity=0.210 Sum_probs=144.7
Q ss_pred CCChhhhHHhhcCC---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEE-
Q 010480 270 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF- 345 (509)
Q Consensus 270 ~~~~~~~l~~~~p~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~- 345 (509)
...+||++.+.+|. ..+|+|||+|+|.. +.++|+|+.+ +.|.+|+||+++.+|+ .+.|.
T Consensus 30 ~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~--~~l~~~v~~~---------~~G~~s~~l~~l~~Gd------~v~v~~ 92 (248)
T 1fdr_A 30 PFTAGQFTKLGLEIDGERVQRAYSYVNSPDN--PDLEFYLVTV---------PDGKLSPRLAALKPGD------EVQVVS 92 (248)
T ss_dssp CCCTTCEEEEEECC---CEEEEEECCSCTTC--SSEEEEEECC---------TTCSSHHHHHTCCTTC------EEEEES
T ss_pred CcCCCCcEEEEccCCCCeeeeeecccCCCCC--CcEEEEEEEe---------CCCchhhHHHhCCCcC------EEEEec
Confidence 45689998766663 45799999999863 7889887643 3599999999876654 36787
Q ss_pred EecCCCCCCCCC-CCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcC-CcCe
Q 010480 346 VRQSNFKLPADA-KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALSQ 423 (509)
Q Consensus 346 ~~~g~F~lp~~~-~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~-~~~~ 423 (509)
.|.|.|.++.+. .++++|||+|||||||++|++++.... ...+++|+||+|+.+ |++|.+||+++++.. ..++
T Consensus 93 gP~G~f~l~~~~~~~~~vliagG~GitP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~ 167 (248)
T 1fdr_A 93 EAAGFFVLDEVPHCETLWMLATGTAIGPYLSILRLGKDLD----RFKNLVLVHAARYAA-DLSYLPLMQELEKRYEGKLR 167 (248)
T ss_dssp SCBCCCSGGGSCCCSEEEEEEEGGGGHHHHHHHHHCCSCT----TCSEEEEEEEESSGG-GCTTHHHHHHHHHHTTTSEE
T ss_pred CCcceeEcCCCCCCceEEEEEecccHHHHHHHHHHHHhhC----CCCcEEEEEEcCCHH-HhhHHHHHHHHHHhCcCcEE
Confidence 778999987543 689999999999999999999875321 136899999999997 999999999998753 3557
Q ss_pred EEEEEecCCC---CcccchhhHhhcH-HHHHHH-H-hCCCEEEEecCCcchHHHHHHHH-HHHHH
Q 010480 424 LIVAFSREGP---TKEYVQHKMMEKS-SDIWNM-L-SEGAYLYVCGDAKSMARDVHRTL-HTIVQ 481 (509)
Q Consensus 424 ~~~a~Sr~~~---~~~yvq~~i~~~~-~~v~~~-l-~~~~~iyvCGp~~~M~~~v~~~L-~~i~~ 481 (509)
++.++|+++. .+++|++.+.+.. +..... . ..+..||+||| ++|+++|++.| .+.+.
T Consensus 168 ~~~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vy~CGp-~~m~~~v~~~l~~~~G~ 231 (248)
T 1fdr_A 168 IQTVVSRETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGN-PQMVRDTQQLLKETRQM 231 (248)
T ss_dssp EEEEESSSCCTTEEESCHHHHHHTSHHHHHHTSCCCTTTEEEEEEEC-HHHHHHHHHHHHHHHCC
T ss_pred EEEEEecCCCCCCcceeeChHHHhhhHHHhhccCCCccCCEEEEeCC-HHHHHHHHHHHHHHcCC
Confidence 8889998754 3678888776531 111111 1 24689999999 89999999998 76543
No 21
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.93 E-value=8.6e-26 Score=229.41 Aligned_cols=182 Identities=23% Similarity=0.275 Sum_probs=146.1
Q ss_pred CCChhhhHHhhcCC-CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhh-hcCCCccCCCCceeeEEEe
Q 010480 270 KPPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 270 ~~~~~~~l~~~~p~-~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~-~~~~~~~~~~~~~v~v~~~ 347 (509)
...+|||+.+.+|. ..+|+|||+|+|. .+.++|+|+.+ ..|.+|+||+ ++.+|+ .+.|..|
T Consensus 138 ~~~pGQ~v~l~~~~~~~~R~ySi~s~~~--~~~l~~~vk~~---------~~G~~S~~L~~~l~~Gd------~v~v~gP 200 (338)
T 1krh_A 138 HFLAGQYVNVTLPGTTETRSYSFSSQPG--NRLTGFVVRNV---------PQGKMSEYLSVQAKAGD------KMSFTGP 200 (338)
T ss_dssp CCCTTCEEEEECTTSSCEEEEECCSCTT--CSEEEEEEECC---------TTCHHHHHHHTTCCTTC------EEEEEEE
T ss_pred CcCCCCeEEEEcCCCCccccccccCCCC--CCeEEEEEEEc---------CCCCchhhHhhccCCCC------EEEEECC
Confidence 34689999776676 5789999999986 57899888643 3589999996 555543 4788889
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
.|.|.++.+ .+++||||+|||||||++|++++...+ ...+++||||+|+.+ |++|.+||+++++....++++.+
T Consensus 201 ~G~f~~~~~-~~~~vliagGtGiaP~~s~l~~l~~~~----~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~ 274 (338)
T 1krh_A 201 FGSFYLRDV-KRPVLMLAGGTGIAPFLSMLQVLEQKG----SEHPVRLVFGVTQDC-DLVALEQLDALQQKLPWFEYRTV 274 (338)
T ss_dssp ECSCSCCCC-SSCEEEEEEGGGHHHHHHHHHHHHHHC----CSSCEEEEEEESSGG-GCCCHHHHHHHHHHCTTEEEEEE
T ss_pred ccceEeCCC-CceEEEEEccccHhHHHHHHHHHHHcC----CCCeEEEEEEeCCHH-HhhhHHHHHHHHHhCCCeEEEEE
Confidence 999998765 489999999999999999999987642 136899999999997 99999999999887666788889
Q ss_pred EecCCC---CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 428 FSREGP---TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 428 ~Sr~~~---~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+|+++. .++||++.+.+. .+. ..+..||+||| ++|++++++.|.+.+
T Consensus 275 ~s~~~~~~~~~g~v~~~l~~~--~~~---~~~~~vy~CGp-~~m~~~v~~~l~~~G 324 (338)
T 1krh_A 275 VAHAESQHERKGYVTGHIEYD--WLN---GGEVDVYLCGP-VPMVEAVRSWLDTQG 324 (338)
T ss_dssp ETTCCSSSSEESCSGGGCCGG--GGG---GGCSEEEEEEE-HHHHHHHHHHHHHHT
T ss_pred EecCCCCCCccCccCHHHHHh--hcc---cCCcEEEEECC-HHHHHHHHHHHHHcC
Confidence 998654 367898877632 111 24679999999 899999999987653
No 22
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=99.93 E-value=2.4e-26 Score=226.56 Aligned_cols=195 Identities=16% Similarity=0.204 Sum_probs=143.4
Q ss_pred CChhhhHHhhcC---CCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEe
Q 010480 271 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 271 ~~~~~~l~~~~p---~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~ 347 (509)
..+||++.+.+| ...+|+|||+|+|. .++.++|+|+++.+.+..+....|.+|+||+++.+|+ .+.|..|
T Consensus 47 ~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~-~~~~~~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP 119 (275)
T 1umk_A 47 LPVGQHIYLSARIDGNLVVRPYTPISSDD-DKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGD------TIEFRGP 119 (275)
T ss_dssp CCTTCEEEEEEEETTEEEEEEECCSSCTT-CCSEEEEEEECCCSSSBTTBTTCCHHHHHHHHCCTTC------EEEEEEE
T ss_pred CCCCcEEEEEEeeCCcEEEeccccCCccC-CCCeEEEEEEEeccCcccccCCCChhHHHHhcCCCCC------EEEEEcC
Confidence 468999865443 23689999999986 3578999998653333222335699999998876654 3678888
Q ss_pred cCCCCC--------CCC--------CCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHH
Q 010480 348 QSNFKL--------PAD--------AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDE 411 (509)
Q Consensus 348 ~g~F~l--------p~~--------~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~e 411 (509)
.|.|.+ +.+ ..+++||||+|||||||++|++++.... ...++++|+||+|+.+ |++|.+|
T Consensus 120 ~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vliagGtGIaP~~~~l~~l~~~~---~~~~~v~l~~~~r~~~-d~~~~~e 195 (275)
T 1umk_A 120 SGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDP---DDHTVCHLLFANQTEK-DILLRPE 195 (275)
T ss_dssp ECSEEEEETTEEEECSSTTSCCEEEECSEEEEEEEGGGHHHHHHHHHHHHTCT---TCCCEEEEEEEESSGG-GCTTHHH
T ss_pred ccceEecCCccccccccccccccccCCceEEEEecCccHhHHHHHHHHHHhCC---CCCcEEEEEEEcCCHH-HhhHHHH
Confidence 888754 321 3578999999999999999999987531 1236899999999987 9999999
Q ss_pred HHHHHHcCC-cCeEEEEEecCCC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHH-HHHHHHHHHH
Q 010480 412 LNNFVQSGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMAR-DVHRTLHTIV 480 (509)
Q Consensus 412 l~~~~~~~~-~~~~~~a~Sr~~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~-~v~~~L~~i~ 480 (509)
|+++.+.+. .++++.++|+++. .++||++.+.+. .......++.||+||| ++|++ ++++.|.+.+
T Consensus 196 l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~v~~~~l~~---~l~~~~~~~~vyvCGp-~~m~~~~v~~~L~~~G 266 (275)
T 1umk_A 196 LEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRD---HLPPPEEEPLVLMCGP-PPMIQYACLPNLDHVG 266 (275)
T ss_dssp HHHHHHHCTTTEEEEEEESSCCSSCSSEESSCCHHHHHH---HSCCGGGCCEEEEESC-HHHHHHTTHHHHHHHT
T ss_pred HHHHHHhCcCcEEEEEEEcCCCccccCccCccCHHHHHH---hcCCCCCCeEEEEECC-HHHHHHHHHHHHHHcC
Confidence 999987654 4578888898643 357787643321 1101124789999999 89999 8999988754
No 23
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=99.92 E-value=1.2e-26 Score=228.37 Aligned_cols=203 Identities=17% Similarity=0.219 Sum_probs=150.8
Q ss_pred CCChhhhHHhhcC---CCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEE-
Q 010480 270 KPPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF- 345 (509)
Q Consensus 270 ~~~~~~~l~~~~p---~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~- 345 (509)
...+||++.+.+| ....|+|||+|+|. .+.++|+|+.+ ..|.+|+||+++.+|+ .+.|.
T Consensus 46 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~~~~~v~~~---------~~G~~s~~l~~l~~Gd------~v~v~~ 108 (271)
T 4fk8_A 46 RFNNGEFTMVGLEVDGKPLTRAYSIVSPNY--EEHLEFFSIKV---------QNGPLTSRLQHLKVGD------PVLIGK 108 (271)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEEECCSCTT--SSSEEEEEECC---------TTCTTHHHHTTCCTTC------EEEEES
T ss_pred CcCCCCEEEEEccCCCceeeeeEeccCCCC--CCcEEEEEEEE---------CCCchhhHHhcCCCCC------EEEEec
Confidence 3568999976656 23579999999986 36788777532 4599999998776654 37888
Q ss_pred EecCCCCCCC-CCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCC----
Q 010480 346 VRQSNFKLPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA---- 420 (509)
Q Consensus 346 ~~~g~F~lp~-~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~---- 420 (509)
.|.|.|.++. +..++++|||+|||||||++|++++..... ..+++|+||+|+.+ |++|.+||+++.+++.
T Consensus 109 gP~G~~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~ 183 (271)
T 4fk8_A 109 KPTGTLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYER----FDKVVLTHTCRLKG-ELAYMDYIKHDLPGHEYLGD 183 (271)
T ss_dssp CCBCSCCGGGBCCCSEEEEEECGGGGHHHHHHTTCHHHHHH----CSEEEEEECCCSHH-HHHHHHHHHTCCTTCTTHHH
T ss_pred CCCcceecCCcCCCCeEEEEECCEEHHHHHHHHHHHHhcCC----CCCEEEEEecCCHH-HHhHHHHHHHHHHhCccccc
Confidence 8889998875 357899999999999999999999876432 26899999999997 9999999999877654
Q ss_pred ----cCeEEEEEecCCC-CcccchhhHhhcHHHHHHH-----H-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHH
Q 010480 421 ----LSQLIVAFSREGP-TKEYVQHKMMEKSSDIWNM-----L-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSS 489 (509)
Q Consensus 421 ----~~~~~~a~Sr~~~-~~~yvq~~i~~~~~~v~~~-----l-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~ 489 (509)
.++++.++|++.. .++++++.+.+. .+.+. + ..++.||+||| ++|+++|++.|.+.+.....+
T Consensus 184 ~~~~~~~~~~~~s~~~~~~~G~v~~~~~~~--~l~~~~~~~~~~~~~~~v~vCGp-~~m~~~v~~~l~~~gv~~~~i--- 257 (271)
T 4fk8_A 184 VIREKLVYYPTVTREEFENEGRITDLIASG--KLFTDLDMPPFSPEQDRVMLCGS-TAMLKDTTELLKKAGLVEGKN--- 257 (271)
T ss_dssp HHHHHEEEEECC-------CCHHHHHHHHS--HHHHHTTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHHTTCCBCBT---
T ss_pred cccceEEEEEEecCCccccccccChHHhcc--hhhhhcccccCCCCCCEEEEECC-HHHHHHHHHHHHHcCCchhhc---
Confidence 3467888888643 467888876543 11111 1 25789999999 899999999998876554433
Q ss_pred HHHHHHHHHHHCCCeEEeeC
Q 010480 490 KAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 490 ~a~~~~~~l~~~~Ry~~dvw 509 (509)
...|+|+.|.|
T Consensus 258 ---------~~~~~~~~E~y 268 (271)
T 4fk8_A 258 ---------SAPGHYVIERA 268 (271)
T ss_dssp ---------TBCBSEEEEES
T ss_pred ---------CCCCcEEEEEe
Confidence 33678887765
No 24
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=99.92 E-value=2.1e-25 Score=215.67 Aligned_cols=184 Identities=16% Similarity=0.281 Sum_probs=141.6
Q ss_pred CCChhhhHHhhcCCC-----CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceee
Q 010480 270 KPPLGVFFAAIVPRL-----QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAP 343 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~-----~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~ 343 (509)
...+||++.+.+|.. .+|+|||+|+|. .+.++|+|+.+ ..++...|.+|+||++ +.+|+ .+.
T Consensus 33 ~~~pGq~v~l~~~~~~~~~~~~R~ySi~s~~~--~~~~~i~vk~~----~~~~~~~G~~S~~l~~~l~~G~------~v~ 100 (243)
T 4eh1_A 33 DYQPGQYIGIEVTPEGSDYREIRQYSLSHASN--GREYRISVKRE----GVGSDNPGLVSHYLHNNVKVGD------SVK 100 (243)
T ss_dssp CCCTTCEEEEEECCSSCSSCEEEEEEBCSCCC--SSCEEEEEECT----TTTSSSCCHHHHHHHHHCCTTC------EEE
T ss_pred CcCCCCEEEEEEecCCCccccceeeEeccCCC--CCeEEEEEEEe----ecCCCCCCeehhHHHhcCCCCC------EEE
Confidence 356899997766632 369999999986 36788877642 1122356999999985 55543 478
Q ss_pred EEEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCe
Q 010480 344 IFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQ 423 (509)
Q Consensus 344 v~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~ 423 (509)
|..|.|.|.++ +..+++||||+|||||||++|++++..... .+++|+||+|+.+ |++|.+||+++.+.+ .++
T Consensus 101 v~gP~G~~~~~-~~~~~~vliagGtGitp~~~~l~~l~~~~~-----~~v~l~~~~r~~~-~~~~~~el~~l~~~~-~~~ 172 (243)
T 4eh1_A 101 LYAPAGDFFYV-ERERPVVLISAGVGATPMQAILHTLAKQNK-----SGVTYLYACNSAK-EHTFAQETAQLIAQQ-GWM 172 (243)
T ss_dssp EEEEECSCCCC-CCSSCEEEEEEGGGHHHHHHHHHHHHHTTC-----CSEEEEEEESSGG-GCTTHHHHHHHHHHH-TCE
T ss_pred EEccCcccCcC-CCCCCEEEEEccccHHHHHHHHHHHHHcCC-----CeEEEEEEeCChh-hhhHHHHHHHHHHhC-CeE
Confidence 88899999988 567899999999999999999999886421 2399999999998 999999999998876 668
Q ss_pred EEEEEecCCC---CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHH
Q 010480 424 LIVAFSREGP---TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQ 481 (509)
Q Consensus 424 ~~~a~Sr~~~---~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 481 (509)
++.++|++.. .+++++..+. . +-..+..||+||| +.|+++|++.|.+.+.
T Consensus 173 ~~~~~s~~~~~~~~~g~~~~~~~-~------~~~~~~~vyvCGp-~~m~~~v~~~l~~~g~ 225 (243)
T 4eh1_A 173 QQVWYRDESADDVLQGEMQLAEL-I------LPIEDGDFYLCGP-IGFMQYVVKQLLALGV 225 (243)
T ss_dssp EEEEESSCCCTTCEESSCCCTTS-C------CCTTTCEEEEEEC-HHHHHHHHHHHHHHTC
T ss_pred EEEEEccCCCcccccCCccHHHe-e------ccCCCcEEEEECC-HHHHHHHHHHHHHcCC
Confidence 8899988644 2456654433 1 1135789999999 8999999999987643
No 25
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=99.92 E-value=2.4e-25 Score=231.04 Aligned_cols=183 Identities=15% Similarity=0.243 Sum_probs=141.9
Q ss_pred CCChhhhHHhhcCC-----CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceee
Q 010480 270 KPPLGVFFAAIVPR-----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAP 343 (509)
Q Consensus 270 ~~~~~~~l~~~~p~-----~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~ 343 (509)
...+||++.+.+|. ..+|+|||+|+|. .+.++|+|+.+ ..|.+|+||++ +.+|+ .+.
T Consensus 182 ~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~--~~~~~i~Vk~~---------~~G~~S~~L~~~l~~Gd------~v~ 244 (396)
T 1gvh_A 182 EYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPD--GKGYRIAVKRE---------EGGQVSNWLHNHANVGD------VVK 244 (396)
T ss_dssp CCCTTCEEEEEECCTTCSSCEEEEEECCSCCC--SSCEEEEEECC---------TTCHHHHHHHHTCCTTC------EEE
T ss_pred CCCCCCeEEEEecCCCCccceeecceeccCCC--CCeEEEEEEEc---------CCCcchHHHHhcCCCCC------EEE
Confidence 45689999766553 3479999999986 47899888642 35999999998 55543 478
Q ss_pred EEEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCe
Q 010480 344 IFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQ 423 (509)
Q Consensus 344 v~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~ 423 (509)
|..|.|.|.++.+..+|+||||+|||||||++|++++...+ ..++++|+||+|+.+ |++|++||+++++.+.+++
T Consensus 245 v~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~ 319 (396)
T 1gvh_A 245 LVAPAGDFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKAG----HTAQVNWFHAAENGD-VHAFADEVKELGQSLPRFT 319 (396)
T ss_dssp EEEEECSCCCCCCTTCCEEEEEEGGGGHHHHHHHHHHHHHT----CCSCEEEEEEESCTT-TCCSHHHHHHHHHTSSSEE
T ss_pred EEcCCcceECCCCCCCCEEEEecchhHhHHHHHHHHHHhcC----CCCcEEEEEEeCCHH-HhhhHHHHHHHHHHCCCeE
Confidence 88999999997656789999999999999999999987642 137899999999998 9999999999998777778
Q ss_pred EEEEEecCCC---------CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 424 LIVAFSREGP---------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 424 ~~~a~Sr~~~---------~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+++++|+++. ..++++....... + .+ .++.||+||| ++|+++|++.|.+.+
T Consensus 320 ~~~~~s~~~~~~~~~~~~~~~G~~~~~~l~~~--~--~~-~~~~vyvCGp-~~m~~~v~~~L~~~G 379 (396)
T 1gvh_A 320 AHTWYRQPSEADRAKGQFDSEGLMDLSKLEGA--F--SD-PTMQFYLCGP-VGFMQFTAKQLVDLG 379 (396)
T ss_dssp EEEEESSCCHHHHHHTCCSEESSCCGGGSSSC--C--CC-TTCEEEEESC-HHHHHHHHHHHHHTT
T ss_pred EEEEECCCCccccccCccCccCcCCHHHHhhc--c--CC-CCCEEEEeCC-HHHHHHHHHHHHHcC
Confidence 8899998642 1344443211110 0 11 3789999999 899999999987643
No 26
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=99.92 E-value=2.3e-25 Score=219.33 Aligned_cols=188 Identities=17% Similarity=0.216 Sum_probs=143.0
Q ss_pred CCChhhhHHhhcCC----CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEE
Q 010480 270 KPPLGVFFAAIVPR----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF 345 (509)
Q Consensus 270 ~~~~~~~l~~~~p~----~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~ 345 (509)
...+|||+.+.+|. ..+|+|||+|+|.. +.++|+|+.+ +.|.+|+||+++.+|+ .+.|.
T Consensus 43 ~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~--~~~~l~v~~~---------~~G~~s~~l~~l~~Gd------~v~v~ 105 (272)
T 2bgi_A 43 RFRSGEFVMIGLLDDNGKPIMRAYSIASPAWD--EELEFYSIKV---------PDGPLTSRLQHIKVGE------QIILR 105 (272)
T ss_dssp CCCTTCEEEEEEECTTSCEEEEEEECCSCTTC--SEEEEEEECC---------TTCTTHHHHTTCCTTC------EEEEE
T ss_pred ccCCCCEEEEEeccCCCCeeeeeeeeccCCCC--CeEEEEEEEc---------cCCCchhHHHhCCCCC------EEEEe
Confidence 35689999766662 35799999999863 7888887643 3599999999776654 36787
Q ss_pred -EecCCCCCCCCC-CCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHH-HHHH-----
Q 010480 346 -VRQSNFKLPADA-KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELN-NFVQ----- 417 (509)
Q Consensus 346 -~~~g~F~lp~~~-~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~-~~~~----- 417 (509)
.|.|.|.++... .++++|||+|||||||++|++++.... ...+++|+||+|+.+ |++|.+||+ ++++
T Consensus 106 ~gP~G~f~~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~~l~~~~~~~ 180 (272)
T 2bgi_A 106 PKPVGTLVIDALLPGKRLWFLATGTGIAPFASLMREPEAYE----KFDEVIMMHACRTVA-ELEYGRQLVEALQEDPLIG 180 (272)
T ss_dssp EEEECSCCGGGBCCCSEEEEEEEGGGGHHHHHHTTCGGGGT----SCSEEEEEEEESSSG-GGHHHHHHHHHHHHCTTTT
T ss_pred eCCCCcccccccccCCeEEEEeecccHHHHHHHHHHHHhcC----CCCcEEEEEEeCCHH-HhhHHHHHHHHHHhcchhh
Confidence 688999887543 689999999999999999999875421 136899999999997 999999999 9987
Q ss_pred c--CCcCeEEEEEecCCC-CcccchhhHhhcH-HHHHHH--H-hCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 418 S--GALSQLIVAFSREGP-TKEYVQHKMMEKS-SDIWNM--L-SEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 418 ~--~~~~~~~~a~Sr~~~-~~~yvq~~i~~~~-~~v~~~--l-~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
. +..++++.++|++.. .++||++.+.+.. .....+ + ..++.||+||| ++|+++|++.|.+.+
T Consensus 181 ~~~~~~~~~~~~~s~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~G 249 (272)
T 2bgi_A 181 ELVEGKLKYYPTTTREEFHHMGRITDNLASGKVFEDLGIAPMNPETDRAMVCGS-LAFNVDVMKVLESYG 249 (272)
T ss_dssp TTSTTTEEEEEEESSSCCSSBCCHHHHHHSCHHHHHHTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHTTT
T ss_pred cccCCcEEEEEEecCCccccCceechHHHhhhHhhhcccccCCCCCcEEEEECC-HHHHHHHHHHHHHcC
Confidence 3 245578889998742 4788988876531 111100 1 24689999999 899999999887654
No 27
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=99.92 E-value=8.9e-25 Score=226.91 Aligned_cols=185 Identities=14% Similarity=0.260 Sum_probs=142.9
Q ss_pred CCChhhhHHhhc--C--C---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhh-hcCCCccCCCCce
Q 010480 270 KPPLGVFFAAIV--P--R---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSW 341 (509)
Q Consensus 270 ~~~~~~~l~~~~--p--~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~-~~~~~~~~~~~~~ 341 (509)
...+||++.+.+ | . ..+|+|||+|+|. ++.++|+|+... ..+..+.|.+|+||+ ++.+|+ .
T Consensus 183 ~~~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p~--~~~~~i~Vk~~~---~~~~~~~G~~S~~L~~~l~~Gd------~ 251 (399)
T 4g1v_A 183 PITPGQYITVNTHPIRQENQYDALRHYSLCSAST--KNGLRFAVKMEA---ARENFPAGLVSEYLHKDAKVGD------E 251 (399)
T ss_dssp CCCTTCEEEEEECCCSTTCCSCEEEEEEBSCSCC--TTCEEEEEECCC---CBTTBCCCHHHHHHHHTCCTTC------E
T ss_pred CCCCCCEEEEEEeCCCCCCccceeeeecccCCCC--CCeEEEEEEecc---CCCCCCCCEehhHHHhCCCCCC------E
Confidence 345899997653 3 3 3579999999986 377888876421 111235799999998 555543 4
Q ss_pred eeEEEecCCCCCCCC----CCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHH
Q 010480 342 APIFVRQSNFKLPAD----AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQ 417 (509)
Q Consensus 342 v~v~~~~g~F~lp~~----~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~ 417 (509)
+.|..|.|.|.++.+ ..+|+||||+|||||||++|++++..... .++++|+||+|+.+ |++|.+||+++.+
T Consensus 252 v~v~gP~G~f~l~~~~~~~~~~~~vlIagG~GitP~~s~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~ 326 (399)
T 4g1v_A 252 IKLSAPAGDFAINKELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKCNP----NRPIYWIQSSYDEK-TQAFKKHVDELLA 326 (399)
T ss_dssp EEEEEEECSCCCCTTTTTCSSSCEEEEEEGGGHHHHHHHHHHHHHHCT----TSCEEEEEEESSST-TSTTHHHHHHHHT
T ss_pred EEEEecccceeeCcccccCCCCCEEEEecceeHhHHHHHHHHHHHcCC----CCCEEEEEecCCHH-HhhhHHHHHHHHH
Confidence 788999999999865 57899999999999999999999986532 27899999999987 9999999999998
Q ss_pred cCCcCeEEEEEecCCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 418 SGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 418 ~~~~~~~~~a~Sr~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
.+..+++++++|++. ++++.. .+.+.+..++.||+||| ++|+++|++.|.+.+
T Consensus 327 ~~~~~~~~~~~s~~~---g~~~~~------~l~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~G 379 (399)
T 4g1v_A 327 ECANVDKIIVHTDTE---PLINAA------FLKEKSPAHADVYTCGS-LAFMQAMIGHLKELE 379 (399)
T ss_dssp TCSSEEEEEEETTTS---CCCCHH------HHHHHSCSSCEEEEEEC-HHHHHHHHHHHHHTT
T ss_pred hCCCcEEEEEEeCCC---CcccHH------HHHhhCCCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 877778999998764 455432 12233344799999999 899999999997654
No 28
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=99.91 E-value=4.9e-25 Score=215.83 Aligned_cols=172 Identities=22% Similarity=0.242 Sum_probs=134.1
Q ss_pred CChhhhHHhhcCC---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEe
Q 010480 271 PPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 271 ~~~~~~l~~~~p~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~ 347 (509)
..+||++.+.+|. ..+|+|||+|+|.. .+.++|+|+.+ +.|.+|+||+++.+|+ .+.|..|
T Consensus 34 ~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~-~~~l~~~vk~~---------~~G~~S~~l~~l~~Gd------~v~v~gP 97 (262)
T 1ep3_B 34 DLPGQFLHLAVPNGAMLLRRPISISSWDKR-AKTCTILYRIG---------DETTGTYKLSKLESGA------KVDVMGP 97 (262)
T ss_dssp CSTTCEEEECCSCTTCCSCEEEECCEEETT-TTEEEEEEECC---------CTTSHHHHHHTCCTTC------EEEEEEE
T ss_pred CCCCceEEEEcCCCCceeeEEEEeeeecCC-CCEEEEEEEEe---------cCCchHHHHhcCCCCC------EEEEEcc
Confidence 4689999766664 68899999999863 57899888642 3588999999876654 3788888
Q ss_pred cCC-CCCCCC-CCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEE
Q 010480 348 QSN-FKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 425 (509)
Q Consensus 348 ~g~-F~lp~~-~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~ 425 (509)
.|+ |.++.+ ..+++||||+|||||||++|++++...+ .+++||||+|+.+ |++|.+||++++.. +++
T Consensus 98 ~G~~f~l~~~~~~~~~lliagGtGitP~~s~l~~l~~~~------~~v~l~~~~r~~~-~~~~~~el~~l~~~----~~~ 166 (262)
T 1ep3_B 98 LGNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTG------CQMTILLGFASEN-VKILENEFSNLKNV----TLK 166 (262)
T ss_dssp ESBCCCCTTCCTTSEEEEEEEGGGSHHHHHHHHHHHHHT------CEEEEEEEESSGG-GCCCHHHHHTSTTE----EEE
T ss_pred cCCCccCCCccCCCeEEEEECcCcHHHHHHHHHHHHHcC------CeEEEEEEcCCHH-HhhhHHHHhhhccC----cEE
Confidence 887 998764 4689999999999999999999987631 6799999999998 99999999986532 344
Q ss_pred EEEecCC--CCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 010480 426 VAFSREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 479 (509)
Q Consensus 426 ~a~Sr~~--~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i 479 (509)
++ ++++ ..++||++.+.+. +.++..||+||| ++|++++++ |.+.
T Consensus 167 ~~-~~~~~~~~~g~v~~~l~~~-------~~~~~~vyvCGp-~~m~~~v~~-l~~~ 212 (262)
T 1ep3_B 167 IA-TDDGSYGTKGHVGMLMNEI-------DFEVDALYTCGA-PAMLKAVAK-KYDQ 212 (262)
T ss_dssp EE-ETTCSSSEESCHHHHHHHC-------CSCCSEEEEESC-HHHHHHHHH-HTTT
T ss_pred EE-ECCCCCcceeehHHHHHhh-------ccCCCEEEEECC-HHHHHHHHH-HHhC
Confidence 43 4432 2467888765542 234689999999 899999998 8653
No 29
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=99.91 E-value=2.3e-25 Score=217.49 Aligned_cols=188 Identities=15% Similarity=0.165 Sum_probs=141.1
Q ss_pred CCChhhhHHhhcCC---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEE-
Q 010480 270 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF- 345 (509)
Q Consensus 270 ~~~~~~~l~~~~p~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~- 345 (509)
...+||++.+.+|. ...|+|||+|+|.. +.++|+|+.+ +.|.+|+||+++.+|+ .+.|.
T Consensus 30 ~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~--~~~~~~i~~~---------~~G~~s~~l~~l~~Gd------~v~v~~ 92 (257)
T 2qdx_A 30 RFKTGQFVMIGLEVDGRPLMRAYSIASPNYE--EHLEFFSIKV---------PDGPLTSRLQHLKEGD------ELMVSR 92 (257)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEEECCSCTTS--SEEEEEEECC---------TTCTTHHHHTTCCTTC------EEEECS
T ss_pred ccCCCCEEEEEecCCCCceeeeeEeecCCCC--CeEEEEEEEe---------CCCcchhHHHhCCCCC------EEEEec
Confidence 35689999765552 35799999999863 7888877643 3599999999876654 36676
Q ss_pred EecCCCCCCCCC-CCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHH-HHHH-----c
Q 010480 346 VRQSNFKLPADA-KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELN-NFVQ-----S 418 (509)
Q Consensus 346 ~~~g~F~lp~~~-~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~-~~~~-----~ 418 (509)
.|.|.|.++... .+++||||+|||||||++|++++...+. ..+++|+||+|+.+ |++|.+||+ ++++ +
T Consensus 93 gp~G~f~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~~l~~~~~~~~ 167 (257)
T 2qdx_A 93 KPTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYER----YEKVILVHGVRWVS-ELAYADFITKVLPEHEYFGD 167 (257)
T ss_dssp CCBCSCCGGGBCSCSEEEEEEEGGGGHHHHHHTTCHHHHHH----CSEEEEEEEESSGG-GCTTHHHHHTTGGGCTTTHH
T ss_pred CCCCCccCCcccCCCeEEEEEeceEHHHHHHHHHHHHhcCC----CCeEEEEEEcCCHH-HhHhHHHHHHHHHhchhhhc
Confidence 577889887543 6899999999999999999998765432 26899999999997 999999999 8865 1
Q ss_pred --CCcCeEEEEEecCCC-CcccchhhHhhcH-HHHHHH--H-hCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 419 --GALSQLIVAFSREGP-TKEYVQHKMMEKS-SDIWNM--L-SEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 419 --~~~~~~~~a~Sr~~~-~~~yvq~~i~~~~-~~v~~~--l-~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
...++++.++|++.. .+++|++.+.+.. +..... + ..++.||+||| ++|+++|++.|.+.+
T Consensus 168 ~~~~~~~~~~~~s~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~G 235 (257)
T 2qdx_A 168 QVKEKLIYYPLVTREPFRNQGRQTDLMRSGKLFEDIGLPPMNPQDDRAMICGS-PSMLEETSAVLDSFG 235 (257)
T ss_dssp HHHHHEEEEEEESSSCCSSBSCHHHHHHHSHHHHHHTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHHTT
T ss_pred cCCCcEEEEEEecCCCcccCceechhhhhhhHHHhcccccCCcCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 134478888998743 4688988776531 111100 1 24689999999 899999999987654
No 30
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=99.91 E-value=7.4e-25 Score=227.84 Aligned_cols=186 Identities=22% Similarity=0.306 Sum_probs=141.1
Q ss_pred CCChhhhHHhhcC--C---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceee
Q 010480 270 KPPLGVFFAAIVP--R---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAP 343 (509)
Q Consensus 270 ~~~~~~~l~~~~p--~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~ 343 (509)
...+||++.+.+| . ..+|+|||+|+|. .+.++|+|+.+ +....+.|.+|+||++ +.+|+ .+.
T Consensus 184 ~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~--~~~~~i~Vk~~----~~~~~~~G~~S~~L~~~l~~Gd------~v~ 251 (403)
T 1cqx_A 184 NFEPGQYTSVAIDVPALGLQQIRQYSLSDMPN--GRTYRISVKRE----GGGPQPPGYVSNLLHDHVNVGD------QVK 251 (403)
T ss_dssp CCCTTCEEEEEEEETTTTEEEEEEEECCSCCC--SSCEEEEEECC----CBTTBCCCHHHHHHHHHCCTTC------EEE
T ss_pred CCCCCCEEEEEEecCCCCcceeecceecCCCC--CCeEEEEEEEC----CCCCCCCCeehHHHhhCCCCCC------EEE
Confidence 3468999976555 2 2479999999986 47899888743 1112346999999995 65543 367
Q ss_pred EEEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCe
Q 010480 344 IFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQ 423 (509)
Q Consensus 344 v~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~ 423 (509)
|..|.|.|.++.+..+|+||||+|||||||++|++++.. . ..++++|+||+|+.+ |++|++||+++++.+..++
T Consensus 252 v~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~-~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~ 325 (403)
T 1cqx_A 252 LAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQ-A----PPRQVVFVHGARNSA-VHAMRDRLREAAKTYENLD 325 (403)
T ss_dssp ECCCBCSCSCCTTCCSCEEEEESSCCHHHHHHHHHHHTC-S----SCCCEEEEEEESCSS-SCHHHHHHHHHHHHCTTEE
T ss_pred EecCccCcccCCCCCCCEEEEEecccHhhHHHHHHHHHh-C----CCCcEEEEEEeCChh-hCcHHHHHHHHHHhCCCcE
Confidence 888889999975567899999999999999999999864 1 137899999999998 9999999999988776678
Q ss_pred EEEEEecCCCC---------cccchhhHhhcHHHHHHH-HhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 424 LIVAFSREGPT---------KEYVQHKMMEKSSDIWNM-LSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 424 ~~~a~Sr~~~~---------~~yvq~~i~~~~~~v~~~-l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+++++|++... .++++... +.+. ...++.+|+||| ++|+++|++.|.+.+
T Consensus 326 ~~~~~s~~~~~~~~~~~~~~~G~i~~~~------l~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~G 385 (403)
T 1cqx_A 326 LFVFYDQPLPEDVQGRDYDYPGLVDVKQ------IEKSILLPDADYYICGP-IPFMRMQHDALKNLG 385 (403)
T ss_dssp EEEEESSCCTTCCBTTTBSEESSCCGGG------SHHHHCCTTCEEEEESS-HHHHHHHHHHHHHTT
T ss_pred EEEEECCCCcccccccccCcCCCcCHHH------HhhccCCCCCEEEEeCC-HHHHHHHHHHHHHcC
Confidence 88899986432 23343211 1221 123789999999 899999999987654
No 31
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=99.91 E-value=2.2e-25 Score=219.00 Aligned_cols=194 Identities=14% Similarity=0.224 Sum_probs=138.3
Q ss_pred CCChhhhHHhhcC---CCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCc-cccCcCchhhhhcCCCccCCCCceeeEE
Q 010480 270 KPPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGR-VHKGLCSTWMKNSLPMEKSNDCSWAPIF 345 (509)
Q Consensus 270 ~~~~~~~l~~~~p---~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~-~~~G~~S~~L~~~~~~~~~~~~~~v~v~ 345 (509)
...+||++.+.++ ...+|+|||+|+|.. ++.++|+|+++.+ ...++ ...|.+|+||+++.+|+ .+.|.
T Consensus 42 ~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~-~~~~~l~vk~~~~-~~~~~~~~~G~~s~~l~~l~~Gd------~v~v~ 113 (270)
T 2cnd_A 42 GLPIGKHIFVCATIEGKLCMRAYTPTSMVDE-IGHFDLLVKVYFK-NEHPKFPNGGLMTQYLDSLPVGS------YIDVK 113 (270)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEECCCSCTTC-CSEEEEEEECCCS-SCBTTBTTCCHHHHHHHHCCTTC------EEEEE
T ss_pred CCCCCCEEEEEeeeCCcEEEEeeccCCCccC-CCEEEEEEEEecc-CcccccCCCCchhhHHhcCCCCC------EEEEE
Confidence 3568998865433 236799999999863 5789998876521 11111 13599999998776654 36788
Q ss_pred EecCC--------CCCCC--CCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHH
Q 010480 346 VRQSN--------FKLPA--DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNF 415 (509)
Q Consensus 346 ~~~g~--------F~lp~--~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~ 415 (509)
.|.|. |.++. +..+++||||+|||||||++|++++..... ...++++||||+|+.+ |++|.+||+++
T Consensus 114 gP~G~~~~~~~g~f~l~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~~--~~~~~v~l~~~~r~~~-d~~~~~el~~l 190 (270)
T 2cnd_A 114 GPLGHVEYTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQP--EDHTEMHLVYANRTED-DILLRDELDRW 190 (270)
T ss_dssp EEECSEECCSSSCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTTT--TCCCEEEEEEEESCGG-GCTTHHHHHHH
T ss_pred CCcccceeccccceeccCCcccCCEEEEEeccccHHHHHHHHHHHHhcCC--CCCcEEEEEEEcCCHH-HcchHHHHHHH
Confidence 88775 66653 246899999999999999999999876421 1236899999999998 99999999999
Q ss_pred HHcCC-cCeEEEEEecC---CC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHH-HHHHHHH
Q 010480 416 VQSGA-LSQLIVAFSRE---GP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARD-VHRTLHT 478 (509)
Q Consensus 416 ~~~~~-~~~~~~a~Sr~---~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~-v~~~L~~ 478 (509)
++.+. .++++.++|++ +. .++||++.+.+. .......++.||+||| ++|+++ +++.|.+
T Consensus 191 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~v~~~~l~~---~l~~~~~~~~vyvCGp-~~m~~~~~~~~L~~ 258 (270)
T 2cnd_A 191 AAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLRE---HVPEGGDDTLALACGP-PPMIQFAISPNLEK 258 (270)
T ss_dssp HHHCTTTEEEEEEESCCSCGGGCCCSEESSCCHHHHHH---HSCCCSSSEEEEEECC-HHHHHTTTHHHHHT
T ss_pred HHHCcCcEEEEEEECCCCCCCCCcccccccCCHHHHHH---hcCCCcCCEEEEEECC-HHHHHHHHHHHHHH
Confidence 87653 45788888872 11 357787754321 1111123568999999 899996 5777765
No 32
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.89 E-value=6e-24 Score=214.26 Aligned_cols=174 Identities=15% Similarity=0.192 Sum_probs=133.5
Q ss_pred CCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCc-Cchhhh-hcCCCccCCCCceeeEEEe
Q 010480 270 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGL-CSTWMK-NSLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~-~S~~L~-~~~~~~~~~~~~~v~v~~~ 347 (509)
...+|||+.+.+|...+|+|||+|+|.. .+.++|+|+.+ ..|. +|+||+ ++.+|+ .+.|..|
T Consensus 38 ~~~pGQ~v~l~~~~g~~R~ySi~s~~~~-~~~l~i~Vk~~---------~~G~g~S~~L~~~l~~Gd------~v~v~gP 101 (321)
T 2pia_A 38 PFEAGANLTVAVPNGSRRTYSLCNDSQE-RNRYVIAVKRD---------SNGRGGSISFIDDTSEGD------AVEVSLP 101 (321)
T ss_dssp CCCTTCEEEEECTTSCEEEEECCSCTTC-CSEEEEEEECC---------TTSCSHHHHHHHSCCTTC------EEEECCC
T ss_pred CCCCCCEEEEECCCCCcEEEEeCCCCCC-CCeEEEEEEEe---------cCCcchhHHHHhcCCCCC------EEEEeCC
Confidence 3468999987667668999999999873 57889888643 3577 899999 565543 3678888
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
.|.|.++.+ .+++||||+|||||||++|++++...+ ..+++|+||+|+.+ |++|.+||++++ .+. ++.+.
T Consensus 102 ~g~f~l~~~-~~~~vliagG~GItP~~s~l~~l~~~~-----~~~v~l~~~~r~~~-~~~~~~el~~l~-~~~--~~~~~ 171 (321)
T 2pia_A 102 RNEFPLDKR-AKSFILVAGGIGITPMLSMARQLRAEG-----LRSFRLYYLTRDPE-GTAFFDELTSDE-WRS--DVKIH 171 (321)
T ss_dssp BCCSCCCTT-CSEEEEEEEGGGHHHHHHHHHHHHHHC-----SSEEEEEEEESCGG-GCTTHHHHHSTT-TTT--TEEEE
T ss_pred ccccccCCC-CCCEEEEEecccHhHHHHHHHHHHHcC-----CCcEEEEEEECChh-hhHHHHHHhcCc-cCC--eEEEE
Confidence 899999764 679999999999999999999987642 16799999999998 999999999885 233 34555
Q ss_pred EecCC-CCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHH
Q 010480 428 FSREG-PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 478 (509)
Q Consensus 428 ~Sr~~-~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~ 478 (509)
++++. ..+.++++.+.. ...+..||+||| ++|+++|++.|.+
T Consensus 172 ~~~~~~~g~~~~~~ll~~--------~~~~~~vyvCGP-~~m~~~v~~~l~~ 214 (321)
T 2pia_A 172 HDHGDPTKAFDFWSVFEK--------SKPAQHVYCCGP-QALMDTVRDMTGH 214 (321)
T ss_dssp ECTTCTTSCCCHHHHHSS--------CCTTEEEEEESC-HHHHHHHHHHTTT
T ss_pred ECCCcccCccCHHHHhcc--------cCCCCEEEEECC-HHHHHHHHHHHHh
Confidence 66542 223444443332 125689999999 8999999999876
No 33
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=99.77 E-value=1.4e-19 Score=175.87 Aligned_cols=171 Identities=13% Similarity=0.095 Sum_probs=116.9
Q ss_pred CChhhhHHhhcCC----CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEE
Q 010480 271 PPLGVFFAAIVPR----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 346 (509)
Q Consensus 271 ~~~~~~l~~~~p~----~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~ 346 (509)
..+||++.+.+|. ...|+|||+|.+. +.++|.|.++ ...|.+|+||+++.+|+ .+.|..
T Consensus 39 ~~pGQ~v~l~~~~~~~~~~~R~YSi~~~~~---~~~~i~~~~~--------~~~G~~S~~l~~l~~Gd------~l~v~g 101 (252)
T 2gpj_A 39 DQESAYIKLLFPQAGERPLMRTYTIRQQRD---DEIDVDFVLH--------DTDGPASSWAKTAQVGE------LIQIGG 101 (252)
T ss_dssp CCTTCEEEEEECCTTSCCEEEEEECCEEET---TEEEEEEECC--------SSCCHHHHHHHHCCTTC------EEEEEE
T ss_pred CCCCCeEEEEcccCCCCCCCCceeeeccCC---CEEEEEEEEe--------CCCCcHHHHHhhCCCCC------EEEEec
Confidence 4589999876664 4569999999764 5666665432 11388999999876654 378889
Q ss_pred ecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEE
Q 010480 347 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 426 (509)
Q Consensus 347 ~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~ 426 (509)
|.|.|.++.+ .++++|||+|||||||++|++++.. ..++++++++|+.+ |.+..+ ....++++.
T Consensus 102 P~G~f~l~~~-~~~~lliagGtGitPi~s~l~~l~~-------~~~~~~~~~~~~~~-d~~~l~-------~~~~~~v~~ 165 (252)
T 2gpj_A 102 PGLKKLINFE-ADWFLLAGDMTALPAISVNLAKLPN-------NAVGYAVIEVLSEA-DIQPLV-------HPEHVELHW 165 (252)
T ss_dssp EECCCCCCSS-SSEEEEEEEGGGHHHHHHHHHHSCT-------TCEEEEEEEESSGG-GCCCCC-------CCTEEEEEE
T ss_pred CCCCCcCCCC-CceEEEEcchhhHHHHHHHHHhCCC-------CCcEEEEEEECCHH-Hhhccc-------CCCCcEEEE
Confidence 9999998754 4789999999999999999998732 14678999999976 654321 122335655
Q ss_pred EEecCCCC-cccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHH-HHH
Q 010480 427 AFSREGPT-KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLH-TIV 480 (509)
Q Consensus 427 a~Sr~~~~-~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~-~i~ 480 (509)
+++.+... ...+.+.+.+. .+...+.++|+||| ++|++++++.|. +.+
T Consensus 166 ~~~~~~~~~g~~~~~~l~~~-----~~~~~~~~vy~CGP-~~m~~av~~~l~~~~G 215 (252)
T 2gpj_A 166 VINPEADPEGRPLVERIAQL-----PWLAGEPAVWIACE-FNSMRALRRHFKQAHA 215 (252)
T ss_dssp EECSSCCTTCHHHHHHHTTS-----CCCSSCEEEEEEEE-HHHHHHHHHHHHHHCC
T ss_pred EeCCCCCcccHHHHHHHHhc-----cCCCCCcEEEEEcC-HHHHHHHHHHHHHhcC
Confidence 55543221 11232222211 00023568999999 899999999987 443
No 34
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=99.70 E-value=6.7e-18 Score=155.73 Aligned_cols=133 Identities=12% Similarity=0.227 Sum_probs=89.3
Q ss_pred EecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhh---cCCCCCeEEEEeccCCCCccc-cHHHHHHHHHc---
Q 010480 346 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEA---GAELGPSLLFFGCRNRKMDYI-YEDELNNFVQS--- 418 (509)
Q Consensus 346 ~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~---~~~~~~~~L~~G~R~~~~d~l-y~~el~~~~~~--- 418 (509)
.|.|.|.++....+++||||||||||||++|+++++..... +....+++|+||+|+.+ +++ |.+||+++.+.
T Consensus 5 GP~G~~~~~~~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~-~~~w~~~~l~~l~~~~~~ 83 (186)
T 3a1f_A 5 GPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTH-AFEWFADLLQLLESQMQE 83 (186)
T ss_dssp STTSHHHHHHTTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTT-TTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccChhhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcc-hHHHHHHHHHHHHHHHhh
Confidence 34677765434467899999999999999999998865321 11237899999999998 888 99999999875
Q ss_pred ---CCcCeEEEEEecCCC---Ccccchh-----hH----------hhcHHHHHH----HHh-CCCEEEEecCCcchHHHH
Q 010480 419 ---GALSQLIVAFSREGP---TKEYVQH-----KM----------MEKSSDIWN----MLS-EGAYLYVCGDAKSMARDV 472 (509)
Q Consensus 419 ---~~~~~~~~a~Sr~~~---~~~yvq~-----~i----------~~~~~~v~~----~l~-~~~~iyvCGp~~~M~~~v 472 (509)
...+++++++|++.. .+.|++. .+ +-..+.+.+ ... .+..||+||| ++|+++|
T Consensus 84 ~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gR~~~~~~~~~~~~~~~~~~~~v~~CGP-~~m~~~v 162 (186)
T 3a1f_A 84 RNNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCGP-EALAETL 162 (186)
T ss_dssp TTCTTSEEEEEEETTC-----------------------CCEEESCCCHHHHHHHHHHHSTTCEEEEEEESC-HHHHHHH
T ss_pred ccCCCeEEEEEEEcCCCCCcccceeeccccccccCCCCccccccCCCCHHHHHHHHHHhCCCCcEEEEEeCC-HHHHHHH
Confidence 234578888887522 1112220 00 001111221 111 3578999999 8999999
Q ss_pred HHHHHHHH
Q 010480 473 HRTLHTIV 480 (509)
Q Consensus 473 ~~~L~~i~ 480 (509)
+++|.+.+
T Consensus 163 ~~~l~~~g 170 (186)
T 3a1f_A 163 SKQSISNS 170 (186)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhh
Confidence 99988764
No 35
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=99.69 E-value=2.4e-17 Score=145.79 Aligned_cols=121 Identities=11% Similarity=0.042 Sum_probs=84.7
Q ss_pred eEEEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcC
Q 010480 343 PIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALS 422 (509)
Q Consensus 343 ~v~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~ 422 (509)
.|.+|.|+|...+. .++++||||||||||++||+++....+ .+++|+ |+|+++ |++|++||++++.+ .
T Consensus 4 ~v~GP~G~~~~~~~-~~~~llIaGG~GiaPl~sm~~~l~~~~------~~v~l~-g~R~~~-~~~~~~el~~l~~~---~ 71 (142)
T 3lyu_A 4 NVAGPLGTPVPMEK-FGKILAIGAYTGIVEVYPIAKAWQEIG------NDVTTL-HVTFEP-MVILKEELEKAVTR---H 71 (142)
T ss_dssp ---CCCSCCBCCCC-CSEEEEEEETTHHHHHHHHHHHHHHTT------CEEEEE-EEEEGG-GCCSHHHHHTTSSE---E
T ss_pred eeeCCCCCCccCCC-CCeEEEEECcCcHHHHHHHHHHHHhcC------CcEEEE-EeCCHH-HhhHHHHHHHHHhh---e
Confidence 45667788766543 689999999999999999999987531 579999 999998 99999999987542 1
Q ss_pred eEEEEEecCCC--------CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHH
Q 010480 423 QLIVAFSREGP--------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQ 481 (509)
Q Consensus 423 ~~~~a~Sr~~~--------~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 481 (509)
.+..+++++.. .+++|.+.+.+. ... .+...||+||| ++|+++|.+.+.+...
T Consensus 72 ~~~~~~~~~~~~~~d~~~g~~G~v~~~l~~~----~~~-~~~~~vy~CGP-~~Mm~av~~~l~~~~~ 132 (142)
T 3lyu_A 72 IVEPVPLNPNQDFLANMKNVSQRLKEKVREL----LES-EDWDLVFMVGP-VGDQKQVFEVVKEYGV 132 (142)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHHHHHH----HHS-SCCSEEEEESC-HHHHHHHHHHHHHHTC
T ss_pred EEEEeecccccCCCCCCCCCccchhHHHHHh----ccc-CCCCEEEEECC-HHHHHHHHHHHHHcCC
Confidence 23334443211 245555544321 111 24568999999 8999999999887653
No 36
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=99.69 E-value=1.4e-17 Score=150.10 Aligned_cols=120 Identities=11% Similarity=0.042 Sum_probs=83.5
Q ss_pred eEEEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcC
Q 010480 343 PIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALS 422 (509)
Q Consensus 343 ~v~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~ 422 (509)
.|..|.|+|.... ..+|++||||||||||++||+++....+ .+++|+ |+|+.+ |.+|.+||++++.+ .
T Consensus 9 ~v~gP~G~~f~~~-~~~~~llIaGG~GItPl~sm~~~l~~~~------~~v~l~-g~r~~~-d~~~~~el~~l~~~---~ 76 (158)
T 3lrx_A 9 NVAGPLGTPVPME-KFGKILAIGAYTGIVEVYPIAKAWQEIG------NDVTTL-HVTFEP-MVILKEELEKAVTR---H 76 (158)
T ss_dssp ---CCCCCCBCCC-CCSEEEEEEETTHHHHHHHHHHHHHHHT------CEEEEE-EECBGG-GCCSHHHHHHHSSE---E
T ss_pred EEECCCCCCCccC-CCCeEEEEEccCcHHHHHHHHHHHHhcC------CcEEEE-EeCCHH-HhhHHHHHHHHHhc---e
Confidence 6777888865433 4689999999999999999999986532 579999 999998 99999999998642 1
Q ss_pred eEEEEEecCC--------CCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 423 QLIVAFSREG--------PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 423 ~~~~a~Sr~~--------~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
.+..+++++. +.+++|++.+.+. ... .+...||+||| ++|+++|.+.|.+.+
T Consensus 77 ~~~~v~~~~~~~~~~~~~g~~G~v~~~l~~~----l~~-~~~~~vy~CGP-~~mm~~v~~~l~~~G 136 (158)
T 3lrx_A 77 IVEPVPLNPNQDFLANMKNVSQRLKEKVREL----LES-EDWDLVFMVGP-VGDQKQVFEVVKEYG 136 (158)
T ss_dssp EECCBCCCTTSCHHHHHHHHHHHHHHHHHHH----HHH-SCCSEEEEESC-HHHHHHHHHHHGGGT
T ss_pred EEEEeeccccccCCCCCCCCcccccHHHHHh----hcc-CCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 2222233321 1245665544321 111 24578999999 899999999887754
No 37
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=98.91 E-value=5.2e-10 Score=105.06 Aligned_cols=55 Identities=24% Similarity=0.370 Sum_probs=52.1
Q ss_pred ccccCCcchhHHHHHhhcCCeecccCcccCCCCCchhhHHHHHHHHHHHHHhhhCCC
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDD 61 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~~~e~~f~~W~~~l~~~l~~~~~~~ 61 (509)
+||+|| |+|+++|++|||++++|+|+||++.|+|++|++|.+.||++|++.++.+
T Consensus 137 ~F~~a~--k~ld~~L~~lGa~~l~~~g~~D~~~~~e~~~~~W~~~l~~~l~~~~~~~ 191 (219)
T 3hr4_A 137 RFCAFA--HDIDQKLSHLGASQLTPMGEGDELSGQEDAFRSWAVQTFKAACETFDVR 191 (219)
T ss_dssp STTHHH--HHHHHHHHHHTCEESSCCEEEETTSCHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHhHHH--HHHHHHHHHCCCCEeeCCEEEecCCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 599999 9999999999999999999999999999999999999999999998643
No 38
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=97.90 E-value=3.7e-06 Score=77.40 Aligned_cols=49 Identities=20% Similarity=0.447 Sum_probs=46.3
Q ss_pred ccccCCcchhHHHHHhhcCCeecccCcccCCCCCchhhHHHHHHHHHHHHH
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELD 55 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~~~e~~f~~W~~~l~~~l~ 55 (509)
+||.|+ |.|+++|+++||+++.|++++|++.+++.+|+.|.+.||++|.
T Consensus 119 ~f~~a~--~~l~~~L~~~Ga~~v~~~~~~d~~~d~e~~~~~w~~~l~~~l~ 167 (191)
T 1bvy_F 119 TYQKVP--AFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVA 167 (191)
T ss_dssp GTTHHH--HHHHHHHHTTTCCCCEEEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred hHhHHH--HHHHHHHHHCCCeEeeccEEEecCCChHHHHHHHHHHHHHHhc
Confidence 799999 9999999999999999999999877899999999999999996
No 39
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=97.29 E-value=0.00014 Score=63.52 Aligned_cols=48 Identities=23% Similarity=0.032 Sum_probs=43.7
Q ss_pred ccccCCcchhHHHHHhhcCCeecccCcccCCCC--CchhhHHHHHHHHHHHH
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPEL 54 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~--~~e~~f~~W~~~l~~~l 54 (509)
+||.|+ |.|+++|+++||+++.+.+.+|+.. +.++++++|.++++++|
T Consensus 97 ~~~~a~--~~l~~~l~~~G~~~~~~~~~~d~~~~~~~~~~~~~w~~~~~~~l 146 (147)
T 2hna_A 97 TFCGAI--DKLEAELKNSGAKQTGETLKINILDHDIPEDPAEEWLGSWVNLL 146 (147)
T ss_dssp CSSSCT--THHHHHHHHHTCEECSSCBCCCCSSCCSSCSCCHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHcCCeEeeeeEEEecCCCCCcHHHHHHHHHHHHHHh
Confidence 589999 8899999999999999999999854 67888999999999876
No 40
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=96.97 E-value=0.00036 Score=62.40 Aligned_cols=50 Identities=26% Similarity=0.237 Sum_probs=44.7
Q ss_pred ccccCCcchhHHHHHhhcCCeecccCcccCCCCCchhhHHHHHHHHHHHHHhhh
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 58 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~~~e~~f~~W~~~l~~~l~~~~ 58 (509)
+||.|+ +.|+++|+++||+++.+.+.+| .+.++.++.|.++++++|...+
T Consensus 108 ~~~~a~--~~l~~~l~~~G~~~v~~~~~~d--~~~~~~~~~w~~~l~~~l~~~~ 157 (167)
T 1ykg_A 108 FFCQSG--KDFDSKLAELGGERLLDRVDAD--VEYQAAASEWRARVVDALKSRA 157 (167)
T ss_dssp STTHHH--HHHHHHHHHHTCEESSCCEEEC--TTCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHH--HHHHHHHHHCCCeEeecceecC--CCcHHHHHHHHHHHHHHHHhhc
Confidence 589998 8999999999999999999888 4678899999999999997654
No 41
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=95.24 E-value=0.0084 Score=54.06 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=41.3
Q ss_pred ccccCCcchhHHHHHhhcCCeecccC-------------------cccCC-CC---CchhhHHHHHHHHHHHHHhh
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPV-------------------GLGDD-DQ---CIEDDFSAWRELVWPELDNL 57 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~-------------------g~gDd-~~---~~e~~f~~W~~~l~~~l~~~ 57 (509)
+||.|. +.|+++|.++||+.+.+. |++.| ++ ..++.++.|.+.||++|...
T Consensus 106 ~f~~a~--~~l~~~l~~~G~~~v~~~~~~g~~~~~~~~~~~~~~~gl~~d~~~~~~~~~~~~~~w~~~l~~~l~~~ 179 (182)
T 2wc1_A 106 EFVNAL--FFLHEFFSDRGANVVGRWPAKGYGFEDSLAVVEGEFLGLALDQDNQAALTPERLKGWLSLIAADFGLV 179 (182)
T ss_dssp STTTHH--HHHHHHHHTTTCEEECCEECTTSCCSCCTTEETTEESSEEECTTTCGGGHHHHHHHHHHHTHHHHTCC
T ss_pred hHHHHH--HHHHHHHHHCCCEEEEeecCCCcCcccchhhhcCceeeeeccCCCCccccHHHHHHHHHHHHHHHhcc
Confidence 689988 889999999999998873 77643 22 25778999999999998654
No 42
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=91.11 E-value=0.095 Score=45.08 Aligned_cols=47 Identities=15% Similarity=0.022 Sum_probs=37.1
Q ss_pred ccccCCcchhHHHHHhhcCCeecccCcccCCC-CCchhhHHHHHHHHHHH
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPVGLGDDD-QCIEDDFSAWRELVWPE 53 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~-~~~e~~f~~W~~~l~~~ 53 (509)
+||.|+ +.|+++|+++|++++.+....|.. ++....++.|.++|+..
T Consensus 100 ~~~~a~--~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~ 147 (148)
T 3f6r_A 100 HFCGAV--PAIEERAKELGATIIAEGLKMEGDASNDPEAVASFAEDVLKQ 147 (148)
T ss_dssp STTTHH--HHHHHHHHHTTCEECSCCEEEESSGGGCHHHHHHHHHHHHHT
T ss_pred HHHHHH--HHHHHHHHHcCCEEeecceEeecCcchHHHHHHHHHHHHHhh
Confidence 689888 889999999999999987665542 11556788998888764
No 43
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=90.13 E-value=0.1 Score=44.81 Aligned_cols=47 Identities=23% Similarity=0.168 Sum_probs=37.2
Q ss_pred ccccCCcchhHHHHHhhcCCeecccCcccCCCC-CchhhHHHHHHHHHHH
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQ-CIEDDFSAWRELVWPE 53 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~-~~e~~f~~W~~~l~~~ 53 (509)
+||.|. +.|+++|.++|++.+.+....|... +.++.++.|.++|+++
T Consensus 99 ~~~~a~--~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~ 146 (147)
T 1f4p_A 99 YFCGAV--DAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVRGA 146 (147)
T ss_dssp STTHHH--HHHHHHHHHTTCEECSCCEEEESCGGGGHHHHHHHHHHHHTT
T ss_pred HHHHHH--HHHHHHHHHcCCeEhhcccccccCchhHHHHHHHHHHHHHhh
Confidence 388888 8899999999999999876665432 2566799999988764
No 44
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=88.00 E-value=0.88 Score=44.29 Aligned_cols=51 Identities=14% Similarity=0.378 Sum_probs=42.9
Q ss_pred ccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccC
Q 010480 104 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCEN 155 (509)
Q Consensus 104 ~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N 155 (509)
+....|+.++|+.+++++..+...++++|+|+.+ ..+.|+||.++.|.++.
T Consensus 28 ~~p~~~~~~~V~~~~~l~~~~~~~~v~~l~l~~~-~~~~~~pGQ~v~l~~~~ 78 (310)
T 3vo2_A 28 YKPKEPYVGRCLSNTRITGDDAPGETWHMVFSTE-GEIPYREGQSIGIIADG 78 (310)
T ss_dssp BBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECT-TCCCCCTTCEEEEECSS
T ss_pred ecCCCCEEEEEEEEEEccCCCCCccEEEEEEeCC-CCCcccCCCEEEEECCC
Confidence 4456788999999999998777778999999965 46789999999998764
No 45
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=86.22 E-value=0.26 Score=43.79 Aligned_cols=50 Identities=22% Similarity=0.263 Sum_probs=36.9
Q ss_pred ccccCCcchhHHHHHhhcCCeecccC--------------------cc-cCCC---CCchhhHHHHHHHHHHHHHh
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPV--------------------GL-GDDD---QCIEDDFSAWRELVWPELDN 56 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~--------------------g~-gDd~---~~~e~~f~~W~~~l~~~l~~ 56 (509)
+||.|. +.|+++|+++||+.+... |+ -|++ ...++.++.|.+.++++|..
T Consensus 96 ~f~~a~--~~l~~~l~~~G~~~v~~~~~~g~~~~~s~~~~~~~~~~gl~~~~~~~~~~~~~~i~~w~~~i~~~~~~ 169 (175)
T 1ag9_A 96 YFCDAL--GTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDEDRQPELTAERVEKWVKQISEELHL 169 (175)
T ss_dssp STTHHH--HHHHHHHTTTTCEECCCEECTTCCCSCCSCEEETTEESSEEECTTTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHH--HHHHHHHHHCCCEEEEEecCCCcccccchheeeCCeEEeeecCCCCcccccHHHHHHHHHHHHHHhhh
Confidence 689988 889999999999988641 21 1211 12456789999999998854
No 46
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=70.79 E-value=1.5 Score=38.17 Aligned_cols=46 Identities=20% Similarity=0.227 Sum_probs=33.8
Q ss_pred ccccCCcchhHHHHHhhcCCeecccC-------------------cccCCCC----CchhhHHHHHHHHHHHH
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPV-------------------GLGDDDQ----CIEDDFSAWRELVWPEL 54 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~-------------------g~gDd~~----~~e~~f~~W~~~l~~~l 54 (509)
+||.|+ +.|+++|++ |+.+.+. |++.+.. ..++.++.|.+++++.|
T Consensus 95 ~~~~a~--~~l~~~l~~--~~~~~~~~~~g~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~l~~~l 163 (164)
T 2bmv_A 95 TFAEGI--FHIYEKAKA--GKVVGQTSTDGYHFEASKAVEGGKFVGLVIDEDNQDDLTDERISKWVEQVKGSF 163 (164)
T ss_dssp STTTHH--HHHHHHHTT--SEECCCEESTTCCCSCCTTEETTEESSEEECTTTCGGGHHHHHHHHHHHHTTTC
T ss_pred HHhHHH--HHHHHHHhh--CEEEccccCCCccccchhhhhcCcccCccCCCCCccccCHHHHHHHHHHHHHhh
Confidence 489988 889999998 8877764 4444422 24667899999987654
No 47
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=68.65 E-value=9.4 Score=36.74 Aligned_cols=49 Identities=20% Similarity=0.373 Sum_probs=40.0
Q ss_pred CCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccC
Q 010480 106 AQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCEN 155 (509)
Q Consensus 106 ~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N 155 (509)
...++.++|+..+.++.++...+++++.|..+. ...|+||.++.|..+.
T Consensus 25 ~~~~~~~~V~~~~~~t~~~~~~~v~~~~l~~~~-~~~~~pGQ~v~l~~~~ 73 (311)
T 3lo8_A 25 PKEPFTATIVSVESLVGPKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPG 73 (311)
T ss_dssp TTBCEEEEEEEEEECSCTTSSSCEEEEEEECTT-SSCCCTTCEEEEECSS
T ss_pred CCCCeEEEEEeeEeccCCCCCCccEEEEEeCCC-CCcccCCCEEEEeCCC
Confidence 345678999999999866566689999999864 5899999999998764
No 48
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=40.58 E-value=21 Score=35.07 Aligned_cols=25 Identities=24% Similarity=0.293 Sum_probs=21.1
Q ss_pred CCEEEEccCCc--cchhHHHHHHHHHH
Q 010480 359 VPIIMIGPGTG--LAPFRGFLQERFAL 383 (509)
Q Consensus 359 ~pii~Ia~GtG--IAP~~s~l~~~~~~ 383 (509)
+.|++.||||| |.|.+++.+++.++
T Consensus 3 ~~i~i~~GGTgGHi~palala~~L~~~ 29 (365)
T 3s2u_A 3 GNVLIMAGGTGGHVFPALACAREFQAR 29 (365)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHT
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHhC
Confidence 46889999997 88999999998653
No 49
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=35.37 E-value=32 Score=29.93 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.3
Q ss_pred ccccCCcchhHHHHHhhcCCeecccC
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPV 30 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~ 30 (509)
+||.|. +.|+++|.++||+.+.+.
T Consensus 105 ~~~~a~--~~l~~~l~~~G~~~~~~~ 128 (179)
T 1yob_A 105 NYLDAL--GELYSFFKDRGAKIVGSW 128 (179)
T ss_dssp TTTHHH--HHHHHHHHTTTCEEECCB
T ss_pred HHHHHH--HHHHHHHHHCCCEEEEee
Confidence 589988 889999999999998764
No 50
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=34.57 E-value=58 Score=30.46 Aligned_cols=42 Identities=10% Similarity=0.187 Sum_probs=33.2
Q ss_pred CeeEEEeeeeccCCCCCCCcEEEEEEEeCC-CCCccCCCCeeEEcccC
Q 010480 109 PCRSNVAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCEN 155 (509)
Q Consensus 109 ~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~-~~~~y~~GD~l~i~p~N 155 (509)
.+.++|+.++.++. +++.|+|..++ ..+.|+||.++.|..+.
T Consensus 9 ~~~~~V~~~~~~t~-----~~~~l~l~~~~~~~~~~~pGQ~v~l~~p~ 51 (290)
T 2r6h_A 9 EWECEVLSNKNVST-----FIKEFVVKLPEGETMNFKSGSYAQIKIPK 51 (290)
T ss_dssp EEEEEEEEEEESSS-----SEEEEEEECSTTCCCCCCTTCEEEEEECS
T ss_pred EEEEEEEEeeecCC-----CeEEEEEEcCCCCccccCCCceEEEEccc
Confidence 35688999998874 68899998764 35789999999997654
No 51
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=33.88 E-value=41 Score=30.79 Aligned_cols=43 Identities=9% Similarity=0.187 Sum_probs=33.3
Q ss_pred CCeeEEEeeeeccCCCCCCCcEEEEEEEe-C-CC---CCccCCCCeeEEcccC
Q 010480 108 HPCRSNVAVRKELHTPSSDRSCTHLEFDI-A-GT---GLTYETGDHVGVYCEN 155 (509)
Q Consensus 108 ~~~~a~v~~~~~L~~~~~~~~~~~i~l~~-~-~~---~~~y~~GD~l~i~p~N 155 (509)
..+.++|+.++.++. +++.++|.. + +. ...|+||.++.|..++
T Consensus 9 ~~~~~~V~~~~~~~~-----~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~ 56 (250)
T 1tvc_A 9 GSFEAEVVGLNWVSS-----NTVQFLLQKRPDECGNRGVKFEPGQFMDLTIPG 56 (250)
T ss_dssp SEEEEEBCCCEEEET-----TEEEEEECSSTTSSSSSCCSCCSCCEEEECTTS
T ss_pred ceEEEEEEEEEEcCC-----CeEEEEEEecCCCCcccccCcCCCcEEEEEeCC
Confidence 446788888888874 588899887 5 42 5789999999998754
No 52
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=30.43 E-value=72 Score=28.61 Aligned_cols=40 Identities=8% Similarity=0.175 Sum_probs=31.3
Q ss_pred eeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccC
Q 010480 110 CRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCEN 155 (509)
Q Consensus 110 ~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N 155 (509)
+.++|+.++.++. +++.++|..+ ....|+||.++.|..++
T Consensus 3 ~~~~V~~~~~~~~-----~~~~l~l~~~-~~~~~~pGq~v~l~~~~ 42 (232)
T 1qfj_A 3 LSCKVTSVEAITD-----TVYRVRIVPD-AAFSFRAGQYLMVVMDE 42 (232)
T ss_dssp EEEEEEEEEESSS-----SCEEEEEEES-SCCCCCTTCEEEEESSS
T ss_pred eEEEEEEEEecCC-----CEEEEEEecC-CCCCcCCCCEEEEECCC
Confidence 3578888888864 5788888875 36789999999998653
No 53
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=29.89 E-value=18 Score=31.33 Aligned_cols=25 Identities=24% Similarity=0.188 Sum_probs=21.7
Q ss_pred ccccCCcchhHHHHHhhcCCeecccCc
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPVG 31 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~g 31 (509)
+||.|. +.|+++|.++||+.+.+..
T Consensus 101 ~f~~a~--~~l~~~l~~~G~~~~~~~~ 125 (173)
T 2fcr_A 101 NFCDAI--EEIHDCFAKQGAKPVGFSN 125 (173)
T ss_dssp STTTHH--HHHHHHHHHTTCEEECCBC
T ss_pred HHHHHH--HHHHHHHHHCCCEEEeecc
Confidence 689888 8899999999999988754
No 54
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=29.52 E-value=48 Score=30.70 Aligned_cols=41 Identities=10% Similarity=-0.019 Sum_probs=32.0
Q ss_pred eEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCC
Q 010480 111 RSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENL 156 (509)
Q Consensus 111 ~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~ 156 (509)
.++|+..+.++. +++.++|..++....|+||.++.|..++.
T Consensus 7 ~~~V~~~~~~t~-----~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~ 47 (262)
T 1ep3_B 7 MMTVVSQREVAY-----NIFEMVLKGTLVDEMDLPGQFLHLAVPNG 47 (262)
T ss_dssp EEEEEEEEEEET-----TEEEEEEESGGGGGCCSTTCEEEECCSCT
T ss_pred ceEEEEEEEecC-----CEEEEEEEcCcccccCCCCceEEEEcCCC
Confidence 578888888874 58889988764345799999999987653
No 55
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=29.43 E-value=79 Score=30.41 Aligned_cols=42 Identities=14% Similarity=0.231 Sum_probs=33.5
Q ss_pred CeeEEEeeeeccCCCCCCCcEEEEEEEeCCC--CCccCCCCeeEEcccC
Q 010480 109 PCRSNVAVRKELHTPSSDRSCTHLEFDIAGT--GLTYETGDHVGVYCEN 155 (509)
Q Consensus 109 ~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~--~~~y~~GD~l~i~p~N 155 (509)
.+.++|+..+.++. +++.+.|..++. ...|+||.++.|..++
T Consensus 108 ~~~~~V~~~~~~~~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~ 151 (338)
T 1krh_A 108 HFEGTLARVENLSD-----STITFDIQLDDGQPDIHFLAGQYVNVTLPG 151 (338)
T ss_dssp EEEEEEEEEEESSS-----SEEEEEEEECTTCCCCCCCTTCEEEEECTT
T ss_pred EEEEEEEEEEEcCC-----CEEEEEEEeCCCCCCCCcCCCCeEEEEcCC
Confidence 35678888888874 688999988753 5789999999998654
No 56
>2xod_A NRDI protein, NRDI; flavoprotein, redox protein, ribonucleotide reductase; HET: FMN; 0.96A {Bacillus anthracis} PDB: 2xoe_A* 2x2o_A* 2x2p_A*
Probab=27.20 E-value=9.6 Score=30.94 Aligned_cols=41 Identities=7% Similarity=0.092 Sum_probs=23.7
Q ss_pred cccCCcchhHHHHHhhcCCeecccCcccCCCCCchhhHHHHHHHHHH
Q 010480 6 FLSAGINESLFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWP 52 (509)
Q Consensus 6 f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~~~e~~f~~W~~~l~~ 52 (509)
||.|+ +.|+++|.. ...+......++.++ +.++.|.+++|+
T Consensus 78 ~~~~~--~~l~~~~~~---~~~~~~~~~~~~~d~-~~~~~~~~~i~~ 118 (119)
T 2xod_A 78 FGASA--DKISAKYEV---PIVSKFELSGTNNDV-EYFKERVREIAT 118 (119)
T ss_dssp TTHHH--HHHHHHHTC---CEEEEEETTCCHHHH-HHHHHHHHHHTC
T ss_pred HHHHH--HHHHHHhCC---ccEEEEecCCCHHHH-HHHHHHHHHhcc
Confidence 89988 889999754 223332211111222 347889887763
No 57
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=27.09 E-value=1e+02 Score=29.38 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=32.7
Q ss_pred CeeEEEeeeeccCCCCCCCcEEEEEEEeCCC-C-CccCCCCeeEEcccC
Q 010480 109 PCRSNVAVRKELHTPSSDRSCTHLEFDIAGT-G-LTYETGDHVGVYCEN 155 (509)
Q Consensus 109 ~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~-~-~~y~~GD~l~i~p~N 155 (509)
...++|+..+.++. +++.++|..++. . ..|+||.++.|..+|
T Consensus 8 ~~~~~V~~~~~~t~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~ 51 (321)
T 2pia_A 8 FLRLKIASKEKIAR-----DIWSFELTDPQGAPLPPFEAGANLTVAVPN 51 (321)
T ss_dssp CEEEEEEEEEEEET-----TEEEEEEECTTCCCCCCCCTTCEEEEECTT
T ss_pred cEEEEEEEEEEcCC-----CEEEEEEEcCCCCcCCCCCCCCEEEEECCC
Confidence 35678899988874 688999987642 2 379999999998765
No 58
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=25.64 E-value=1e+02 Score=28.44 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=32.4
Q ss_pred CCeeEEEeeeeccCCCCCCCcEEEEEEEeCCC--CCccCCCCeeEEccc
Q 010480 108 HPCRSNVAVRKELHTPSSDRSCTHLEFDIAGT--GLTYETGDHVGVYCE 154 (509)
Q Consensus 108 ~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~--~~~y~~GD~l~i~p~ 154 (509)
....++|+.++.++. +++.++|.+++. ...|+||.++.|..+
T Consensus 15 ~~~~~~V~~~~~~~~-----~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~ 58 (275)
T 1umk_A 15 IKYPLRLIDREIISH-----DTRRFRFALPSPQHILGLPVGQHIYLSAR 58 (275)
T ss_dssp CCEEEEEEEEEECSS-----SEEEEEEECSSTTCBCCCCTTCEEEEEEE
T ss_pred ccEEEEEEEEEEcCC-----CeEEEEEEcCCcccccCCCCCcEEEEEEe
Confidence 345688999888874 678888887642 368999999999854
No 59
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=25.29 E-value=90 Score=28.73 Aligned_cols=41 Identities=20% Similarity=0.317 Sum_probs=32.2
Q ss_pred CeeEEEeeeeccCCCCCCCcEEEEEEEeCCC--CCccCCCCeeEEccc
Q 010480 109 PCRSNVAVRKELHTPSSDRSCTHLEFDIAGT--GLTYETGDHVGVYCE 154 (509)
Q Consensus 109 ~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~--~~~y~~GD~l~i~p~ 154 (509)
...++|+.++.++. +++.++|..++. ...|+||.++.|..+
T Consensus 12 ~~~~~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~ 54 (270)
T 2cnd_A 12 RIHCRLVAKKELSR-----DVRLFRFSLPSPDQVLGLPIGKHIFVCAT 54 (270)
T ss_dssp CEEEEEEEEEEEET-----TEEEEEEECSSTTCCCCCCTTCEEEEEEE
T ss_pred eEEEEEEEEEEeCC-----CeEEEEEECCCCccccCCCCCCEEEEEee
Confidence 45688999998974 688899987642 467999999998754
No 60
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=25.17 E-value=1.4e+02 Score=22.47 Aligned_cols=26 Identities=0% Similarity=-0.049 Sum_probs=21.4
Q ss_pred HHcCCCCHHHHHHHHHHHHHCCCeEE
Q 010480 481 QEQGSLDSSKAESMVKNLQMTGRYLR 506 (509)
Q Consensus 481 ~~~~~~~~~~a~~~~~~l~~~~Ry~~ 506 (509)
.+..|++..+..+.+++|+++|+..-
T Consensus 41 ae~~GvdKKeVdKaik~LKkEgkI~S 66 (80)
T 2lnb_A 41 VKECQAPKRELNQVLYRMKKELKVSL 66 (80)
T ss_dssp HHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCccC
Confidence 44567889999999999999998653
No 61
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=23.92 E-value=1.6e+02 Score=26.48 Aligned_cols=40 Identities=18% Similarity=0.158 Sum_probs=31.2
Q ss_pred eEEEeeeeccCCCCCCCcEEEEEEEeCCC--CCccCCCCeeEEcccC
Q 010480 111 RSNVAVRKELHTPSSDRSCTHLEFDIAGT--GLTYETGDHVGVYCEN 155 (509)
Q Consensus 111 ~a~v~~~~~L~~~~~~~~~~~i~l~~~~~--~~~y~~GD~l~i~p~N 155 (509)
.++|+..+.++. +++.++|..++. ...|+||.++.|..+.
T Consensus 5 ~~~V~~~~~~~~-----~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~ 46 (243)
T 4eh1_A 5 TFVVREKQVESA-----YVTSFVLVPADGGAVLDYQPGQYIGIEVTP 46 (243)
T ss_dssp EEEEEEEEECSS-----SEEEEEEEESSCSCCCCCCTTCEEEEEECC
T ss_pred EEEEEEEEEcCC-----CeEEEEEEeCCCCcCCCcCCCCEEEEEEec
Confidence 567888888864 688899987642 3689999999998764
No 62
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=23.02 E-value=96 Score=28.74 Aligned_cols=41 Identities=12% Similarity=0.168 Sum_probs=32.6
Q ss_pred CeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccC
Q 010480 109 PCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCEN 155 (509)
Q Consensus 109 ~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N 155 (509)
+..++|+.++.++. +++.++|..++ ...|+||.++.|..++
T Consensus 16 ~~~~~V~~~~~~~~-----~~~~l~l~~~~-~~~~~pGQ~v~l~~~~ 56 (272)
T 2bgi_A 16 PDAQTVTSVRHWTD-----TLFSFRVTRPQ-TLRFRSGEFVMIGLLD 56 (272)
T ss_dssp CEEEEEEEEEEEET-----TEEEEEEECCT-TCCCCTTCEEEEEEEC
T ss_pred eEEEEEEEEEEcCC-----CEEEEEEeCCC-CCccCCCCEEEEEecc
Confidence 45688999998974 57888888653 5689999999998763
No 63
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=22.22 E-value=1.3e+02 Score=27.10 Aligned_cols=40 Identities=10% Similarity=0.197 Sum_probs=31.4
Q ss_pred eeEEEeeeeccCCCCCCCcEEEEEEEeCC--CCCccCCCCeeEEccc
Q 010480 110 CRSNVAVRKELHTPSSDRSCTHLEFDIAG--TGLTYETGDHVGVYCE 154 (509)
Q Consensus 110 ~~a~v~~~~~L~~~~~~~~~~~i~l~~~~--~~~~y~~GD~l~i~p~ 154 (509)
..++|+.++.++. +++.+.|.+++ ....|+||.++.|..+
T Consensus 12 ~~~~v~~~~~~t~-----~~~~~~l~~~~~~~~~~~~pGq~v~l~~~ 53 (243)
T 2eix_A 12 KKFMLREKQIINH-----NTRLFRFNLHHPEDVVGLPIGQHMSVKAT 53 (243)
T ss_dssp EEEEEEEEEEEET-----TEEEEEEECSSTTCCCCCCTTCEEEEEEE
T ss_pred EEEEEEEEEEeCC-----CeEEEEEEcCCCCcccCcCCceEEEEEEe
Confidence 4678889888875 57788888764 2468999999999865
No 64
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=20.28 E-value=99 Score=28.51 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=31.4
Q ss_pred eeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEccc
Q 010480 110 CRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCE 154 (509)
Q Consensus 110 ~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~ 154 (509)
..++|+..+.++. +++.++|..+ ....|+||.++.|..+
T Consensus 20 ~~~~V~~~~~~~~-----~~~~~~l~~~-~~~~~~pGQ~v~l~~~ 58 (271)
T 4fk8_A 20 DTATVLSVHHWTD-----TLFSFTCTRD-QALRFNNGEFTMVGLE 58 (271)
T ss_dssp EEEEEEEEEEEET-----TEEEEEECCC-TTCCCCTTCEEEEEEE
T ss_pred eeEEEEEEEEcCC-----CEEEEEEEcC-CCCCcCCCCEEEEEcc
Confidence 4678889888874 5788888765 4678999999999765
Done!