BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010481
         (509 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8GUM4|Y3739_ARATH Uncharacterized membrane protein At3g27390 OS=Arabidopsis thaliana
           GN=At3g27390 PE=1 SV=2
          Length = 588

 Score =  362 bits (929), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 194/484 (40%), Positives = 282/484 (58%), Gaps = 19/484 (3%)

Query: 17  LKVAIFFPLPALFGLWLGLSIAGSVLVGVGYGFFTPWVSAFEAFRNDNEYKKLFHCVVDG 76
           LK+ +   LPA   LW  + I GSVL G  YGFF+P  + F+A      Y+  FHC  DG
Sbjct: 76  LKIFLCLCLPAAIILWPIVGILGSVLGGALYGFFSPIFATFDAVGEGKPYQ-FFHCFYDG 134

Query: 77  TWGTIKGSCTMVRDFADLCYHSYPIFLKEIRESPHSNELQPLRLFHVPGCIIAGLLGLVV 136
           TW T++ S T+VRDF D+C+HSY   + E+++S    +   +RL  +PG ++  +LG++V
Sbjct: 135 TWSTMQRSFTVVRDFKDVCFHSYFSLMDELKQSCPDRKYYEIRLLQLPGALVVSVLGILV 194

Query: 137 DIPLYTVIAVIKSPYMLFKGWFRLLHDLISREGPFLETACIPIAGLTILLWPIIVIGSIV 196
           D P+ +++A+ KSPYMLFKGW RL HDLI REGPFLET C+PIAGL ILLWP+ V G+++
Sbjct: 195 DPPVISLVAICKSPYMLFKGWHRLFHDLIGREGPFLETMCVPIAGLAILLWPLAVTGAVI 254

Query: 197 IAIFSSIFIGLYGSVVVYQERSFRRGVAYVIAMVAEFDEYTNDWLYLREGTILPKPRYRQ 256
            ++ SSIF+G Y  VV YQE SF  G+ Y++A V+ +DEY+ D L L EG+  P+P+YR+
Sbjct: 255 GSVISSIFLGAYAGVVSYQESSFYYGLCYIVASVSIYDEYSTDILDLPEGSCFPRPKYRR 314

Query: 257 KKVHSSSELPVGGNQVAGGKFTSASADAPAMLMPSLAHSRSVREAIQEVKMVQIWVNMMR 316
           K    +   P  G     G   +AS+              SVR  + ++K + +   +  
Sbjct: 315 KDEEPT---PFSGPVPRLGSVKNASS----------MRGGSVRVPMIDIKPLDLLNELFV 361

Query: 317 SCETRGRELLDADVITPADLKDWLKAKCVNEEAIVGFGLPCYSFLQTLLYSIKAGSGGLL 376
            C   G  L    +I   D+++   A+      ++  GLP Y  L  +L S+KA S GLL
Sbjct: 362 ECRRYGEVLATKGLINSKDIEE---ARSSKGSQVISVGLPAYGLLYEILRSVKANSSGLL 418

Query: 377 LPDSV-EITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERME 435
           L D V EIT +NRP +   DWF NP ++LKEQ+    L+E E  YL ++VL     ER++
Sbjct: 419 LSDGVTEITTMNRPKDVFFDWFLNPFLILKEQMKATNLSEEEEEYLGRLVLLFGDPERLK 478

Query: 436 AWDNGGLLPEDALRA-AQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKALVSYSESRPET 494
           + +     P    R  A++   +RRM GL ++VS++PT+RR F  +VK L    + +   
Sbjct: 479 SSNAISASPPLTERKRAELDAFARRMQGLTKTVSRYPTFRRHFVALVKKLSEDLDLKDNN 538

Query: 495 SRSD 498
           S  D
Sbjct: 539 SAKD 542


>sp|P40978|RS19_ORYSJ 40S ribosomal protein S19 OS=Oryza sativa subsp. japonica GN=RPS19A
           PE=3 SV=1
          Length = 146

 Score = 33.5 bits (75), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 10/104 (9%)

Query: 227 IAMVAEFDE---YTNDWLYLREGTILPKPRYRQKKVHSSSELPVGGNQVAGGKFTSASAD 283
           I   A F E   Y  DW Y R  +I        +K++    + VGG Q   G      + 
Sbjct: 39  IVKTARFKELPPYDPDWYYTRAASIA-------RKIYLRQGIGVGGFQKIYGGRQRNGSR 91

Query: 284 APAMLMPSLAHSRSVREAIQEVKMVQIWVNMMRSCETRGRELLD 327
            P     S A SR++ + +Q++ ++ +     R   ++GR  LD
Sbjct: 92  PPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLD 135


>sp|A1RZ10|COXX_THEPD Protoheme IX farnesyltransferase OS=Thermofilum pendens (strain Hrk
           5) GN=ctaB PE=3 SV=1
          Length = 282

 Score = 32.7 bits (73), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 124 PGCIIAGLLGLVVDIPLYTVIAVIKSPYMLFKGWF 158
           P   +AGLLG ++DI +YTV+   KSP+ +  G F
Sbjct: 107 PYVFVAGLLGFLIDIAVYTVLLKRKSPWSVVFGGF 141


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.140    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 186,368,564
Number of Sequences: 539616
Number of extensions: 7931845
Number of successful extensions: 22919
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 22911
Number of HSP's gapped (non-prelim): 6
length of query: 509
length of database: 191,569,459
effective HSP length: 122
effective length of query: 387
effective length of database: 125,736,307
effective search space: 48659950809
effective search space used: 48659950809
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 63 (28.9 bits)