Query 010483
Match_columns 509
No_of_seqs 240 out of 1511
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 07:47:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010483.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010483hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lx0_A Membrane fusion protein 22.0 79 0.0027 20.9 3.0 29 141-169 2-30 (32)
2 1kf6_D Fumarate reductase 13 k 17.0 1.1E+02 0.0039 26.7 3.8 36 469-504 80-115 (119)
3 1znf_A 31ST zinc finger from X 16.0 41 0.0014 19.1 0.6 13 4-16 14-26 (27)
4 2ab3_A ZNF29; zinc finger prot 14.9 45 0.0015 19.1 0.5 13 4-16 17-29 (29)
5 1sp2_A SP1F2; zinc finger, tra 14.4 41 0.0014 20.1 0.2 12 5-16 18-29 (31)
6 1rik_A E6APC1 peptide; E6-bind 14.1 45 0.0015 19.2 0.4 13 4-16 15-27 (29)
7 2kvf_A Zinc finger and BTB dom 13.8 44 0.0015 19.2 0.2 12 5-16 17-28 (28)
8 2m0d_A Zinc finger and BTB dom 12.9 46 0.0016 19.1 0.1 12 5-16 17-28 (30)
9 2lvr_A Zinc finger and BTB dom 16.3 46 0.0016 19.3 0.0 12 5-16 17-28 (30)
10 1zfd_A SWI5; DNA binding motif 12.2 67 0.0023 19.1 0.8 13 4-16 18-30 (32)
No 1
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=22.04 E-value=79 Score=20.93 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=14.6
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHHhhhh
Q 010483 141 RHRIKLGLFINLGLITFLTVLLLFVDWCA 169 (509)
Q Consensus 141 ~~~~~~g~~~~~~l~~~l~~~~~~~~~~~ 169 (509)
||.|-.=..-...|..||..-+++|.|++
T Consensus 2 khtiweviaglvalltflafgfwlfkylq 30 (32)
T 2lx0_A 2 KHTIWEVIAGLVALLTFLAFGFWLFKYLQ 30 (32)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44443333334455556666666666654
No 2
>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_D* 1l0v_D* 2b76_D* 3cir_D* 3p4p_D* 3p4q_D* 3p4r_D* 3p4s_D*
Probab=16.97 E-value=1.1e+02 Score=26.66 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=27.9
Q ss_pred CChhhHHHhhcCCChhHHHHHHHHHHHHHHHHHHHH
Q 010483 469 MAPFHHHLELCGLKEPMIVAGAYVISSVLALFAGYV 504 (509)
Q Consensus 469 ~~pLHH~l~~~G~se~qIV~~~~~i~~llall~i~~ 504 (509)
+|++||-+.+.+.+...--..+|.++.+..++++..
T Consensus 80 ~HRihh~lHDlkih~~~~~~~~Yg~A~l~sv~~~~~ 115 (119)
T 1kf6_D 80 LHRMHHAMHDLKIHVPAGKWVFYGLAAILTVVTLIG 115 (119)
T ss_dssp HHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhheeecCcchhhHHHHHHHHHHHHHHH
Confidence 457899998888877766678999998888777543
No 3
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=15.98 E-value=41 Score=19.06 Aligned_cols=13 Identities=31% Similarity=0.473 Sum_probs=9.9
Q ss_pred cchhhhccccccc
Q 010483 4 CSSFQRHSQSHLG 16 (509)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (509)
-+++++|.+.|-|
T Consensus 14 ~~~l~~H~~~h~~ 26 (27)
T 1znf_A 14 KSALSRHQRVHKN 26 (27)
T ss_dssp HHHHHHHGGGTCC
T ss_pred HHHHHHHHHHcCC
Confidence 3578899998864
No 4
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=14.87 E-value=45 Score=19.14 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=9.7
Q ss_pred cchhhhccccccc
Q 010483 4 CSSFQRHSQSHLG 16 (509)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (509)
-+++++|.+.|-|
T Consensus 17 ~~~l~~H~~~H~~ 29 (29)
T 2ab3_A 17 RRKLNRHKKIHTG 29 (29)
T ss_dssp HHHHHHHHGGGTC
T ss_pred HHHHHHHHHHhCC
Confidence 3578899988854
No 5
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=14.43 E-value=41 Score=20.07 Aligned_cols=12 Identities=42% Similarity=0.847 Sum_probs=9.8
Q ss_pred chhhhccccccc
Q 010483 5 SSFQRHSQSHLG 16 (509)
Q Consensus 5 ~~~~~~~~~~~~ 16 (509)
+++++|.+.|-|
T Consensus 18 ~~L~~H~~~H~~ 29 (31)
T 1sp2_A 18 DELQRHKRTHTG 29 (31)
T ss_dssp HHHHHHHTTTSC
T ss_pred hHHHHHHHHhcC
Confidence 578999998865
No 6
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=14.14 E-value=45 Score=19.19 Aligned_cols=13 Identities=15% Similarity=0.112 Sum_probs=10.1
Q ss_pred cchhhhccccccc
Q 010483 4 CSSFQRHSQSHLG 16 (509)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (509)
-+++++|.+.|.|
T Consensus 15 ~~~l~~H~~~H~~ 27 (29)
T 1rik_A 15 SDHLTLHILLHEN 27 (29)
T ss_dssp SHHHHHHHTGGGS
T ss_pred HHHHHHHHHHhcC
Confidence 3578899998865
No 7
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=13.80 E-value=44 Score=19.23 Aligned_cols=12 Identities=25% Similarity=0.529 Sum_probs=9.2
Q ss_pred chhhhccccccc
Q 010483 5 SSFQRHSQSHLG 16 (509)
Q Consensus 5 ~~~~~~~~~~~~ 16 (509)
+++++|.+.|-|
T Consensus 17 ~~l~~H~~~h~~ 28 (28)
T 2kvf_A 17 HQMETHYRVHTG 28 (28)
T ss_dssp HHHHHHHTTSCC
T ss_pred HHHHHHHHhcCC
Confidence 578889888854
No 8
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=12.89 E-value=46 Score=19.13 Aligned_cols=12 Identities=33% Similarity=0.337 Sum_probs=9.5
Q ss_pred chhhhccccccc
Q 010483 5 SSFQRHSQSHLG 16 (509)
Q Consensus 5 ~~~~~~~~~~~~ 16 (509)
+++++|.+.|-|
T Consensus 17 ~~l~~H~~~h~~ 28 (30)
T 2m0d_A 17 TSKMRHLETHDT 28 (30)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHhcc
Confidence 578899988865
No 9
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=16.25 E-value=46 Score=19.27 Aligned_cols=12 Identities=42% Similarity=0.747 Sum_probs=9.0
Q ss_pred chhhhccccccc
Q 010483 5 SSFQRHSQSHLG 16 (509)
Q Consensus 5 ~~~~~~~~~~~~ 16 (509)
+++++|.+.|.|
T Consensus 17 ~~l~~H~~~h~~ 28 (30)
T 2lvr_A 17 GALQRHVRIHTG 28 (30)
Confidence 467888888764
No 10
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=12.18 E-value=67 Score=19.09 Aligned_cols=13 Identities=31% Similarity=0.429 Sum_probs=10.0
Q ss_pred cchhhhccccccc
Q 010483 4 CSSFQRHSQSHLG 16 (509)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (509)
-+++++|.++|-|
T Consensus 18 ~~~L~~H~~~H~~ 30 (32)
T 1zfd_A 18 NHDLIRHKKSHQE 30 (32)
T ss_dssp SHHHHHHHGGGTC
T ss_pred HHHHHHHHHHccC
Confidence 3578899998865
Done!