BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010485
(509 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
pdb|1LWD|B Chain B, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
Length = 413
Score = 528 bits (1360), Expect = e-150, Method: Compositional matrix adjust.
Identities = 239/343 (69%), Positives = 286/343 (83%)
Query: 81 RVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAE 140
R+KV P+VEMDGDEMTRIIWQ IK+KLI P++D+ +KY+DLG+ NRD T+D+VT++SA
Sbjct: 4 RIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSAL 63
Query: 141 ATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVP 200
AT KY+VA+KCATITPDE R++EF LK MW+SPNGTIRNIL GTVFREPI+C+NIPR+VP
Sbjct: 64 ATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVP 123
Query: 201 GWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMY 260
GW KPI IGRHA GDQY+ATD V+ G K+VF P+DG+ + +VYNF G+ + MY
Sbjct: 124 GWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPAGGVGMGMY 183
Query: 261 NVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHS 320
N DESI FA S A KKWPLY+STKNTILK YDGRFKDIFQ+++E+ ++ F+++
Sbjct: 184 NTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYK 243
Query: 321 IWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTL 380
IWYEHRLIDDMVA +KS GG+VWACKNYDGDVQSD+LAQGFGSLGLMTSVL+ DGKT+
Sbjct: 244 IWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTI 303
Query: 381 EAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYML 423
EAEAAHGTVTRH+R HQKG+ TSTN IASIFAWTRGLEHR L
Sbjct: 304 EAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKL 346
>pdb|1T09|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex Nadp
pdb|1T09|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex Nadp
pdb|1T0L|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|C Chain C, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|D Chain D, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
Length = 414
Score = 523 bits (1347), Expect = e-148, Method: Compositional matrix adjust.
Identities = 238/337 (70%), Positives = 288/337 (85%), Gaps = 1/337 (0%)
Query: 88 IVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNV 147
+VEM GDEMTRIIW++IK+KLIFPY++LD+ YDLGI NRDAT+D+VT ++AEA K+NV
Sbjct: 10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNV 69
Query: 148 AIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPIC 207
+KCATITPDE R++EF LK MW+SPNGTIRNIL GTVFRE I+C+NIPR+V GW KPI
Sbjct: 70 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 129
Query: 208 IGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFK-GPGIALAMYNVDESI 266
IGRHA+GDQYRATD V+ GPGK+++ + P DGT V V+NF+ G G+A+ MYN D+SI
Sbjct: 130 IGRHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSI 189
Query: 267 RAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR 326
FA SS +A SK WPLYLSTKNTILKKYDGRFKDIFQ++Y+++++ +FE IWYEHR
Sbjct: 190 EDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHR 249
Query: 327 LIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAH 386
LIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVL+ DGKT+EAEAAH
Sbjct: 250 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAH 309
Query: 387 GTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYML 423
GTVTRH+R++QKGQETSTN IASIFAWTRGL HR L
Sbjct: 310 GTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKL 346
>pdb|3MAS|B Chain B, Crystal Structure Of Heterodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
Length = 419
Score = 522 bits (1345), Expect = e-148, Method: Compositional matrix adjust.
Identities = 238/337 (70%), Positives = 288/337 (85%), Gaps = 1/337 (0%)
Query: 88 IVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNV 147
+VEM GDEMTRIIW++IK+KLIFPY++LD+ YDLGI NRDAT+D+VT ++AEA K+NV
Sbjct: 15 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNV 74
Query: 148 AIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPIC 207
+KCATITPDE R++EF LK MW+SPNGTIRNIL GTVFRE I+C+NIPR+V GW KPI
Sbjct: 75 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 134
Query: 208 IGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFK-GPGIALAMYNVDESI 266
IGRHA+GDQYRATD V+ GPGK+++ + P DGT V V+NF+ G G+A+ MYN D+SI
Sbjct: 135 IGRHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSI 194
Query: 267 RAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR 326
FA SS +A SK WPLYLSTKNTILKKYDGRFKDIFQ++Y+++++ +FE IWYEHR
Sbjct: 195 EDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHR 254
Query: 327 LIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAH 386
LIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVL+ DGKT+EAEAAH
Sbjct: 255 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAH 314
Query: 387 GTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYML 423
GTVTRH+R++QKGQETSTN IASIFAWTRGL HR L
Sbjct: 315 GTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKL 351
>pdb|3INM|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
pdb|3INM|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
pdb|3INM|C Chain C, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
Length = 425
Score = 521 bits (1342), Expect = e-148, Method: Compositional matrix adjust.
Identities = 237/337 (70%), Positives = 287/337 (85%), Gaps = 1/337 (0%)
Query: 88 IVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNV 147
+VEM GDEMTRIIW++IK+KLIFPY++LD+ YDLGI NRDAT+D+VT ++AEA K+NV
Sbjct: 10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNV 69
Query: 148 AIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPIC 207
+KCATITPDE R++EF LK MW+SPNGTIRNIL GTVFRE I+C+NIPR+V GW KPI
Sbjct: 70 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 129
Query: 208 IGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFK-GPGIALAMYNVDESI 266
IG HA+GDQYRATD V+ GPGK+++ + P DGT V V+NF+ G G+A+ MYN D+SI
Sbjct: 130 IGHHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSI 189
Query: 267 RAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR 326
FA SS +A SK WPLYLSTKNTILKKYDGRFKDIFQ++Y+++++ +FE IWYEHR
Sbjct: 190 EDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHR 249
Query: 327 LIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAH 386
LIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVL+ DGKT+EAEAAH
Sbjct: 250 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAH 309
Query: 387 GTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYML 423
GTVTRH+R++QKGQETSTN IASIFAWTRGL HR L
Sbjct: 310 GTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKL 346
>pdb|3MAP|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
pdb|3MAP|B Chain B, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
pdb|3MAR|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp
pdb|3MAR|B Chain B, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp
pdb|3MAS|A Chain A, Crystal Structure Of Heterodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
Length = 422
Score = 521 bits (1341), Expect = e-148, Method: Compositional matrix adjust.
Identities = 237/337 (70%), Positives = 287/337 (85%), Gaps = 1/337 (0%)
Query: 88 IVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNV 147
+VEM GDEMTRIIW++IK+KLIFPY++LD+ YDLGI NRDAT+D+VT ++AEA K+NV
Sbjct: 10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNV 69
Query: 148 AIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPIC 207
+KCATITPDE R++EF LK MW+SPNGTIRNIL GTVFRE I+C+NIPR+V GW KPI
Sbjct: 70 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 129
Query: 208 IGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFK-GPGIALAMYNVDESI 266
IG HA+GDQYRATD V+ GPGK+++ + P DGT V V+NF+ G G+A+ MYN D+SI
Sbjct: 130 IGHHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSI 189
Query: 267 RAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR 326
FA SS +A SK WPLYLSTKNTILKKYDGRFKDIFQ++Y+++++ +FE IWYEHR
Sbjct: 190 EDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHR 249
Query: 327 LIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAH 386
LIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVL+ DGKT+EAEAAH
Sbjct: 250 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAH 309
Query: 387 GTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYML 423
GTVTRH+R++QKGQETSTN IASIFAWTRGL HR L
Sbjct: 310 GTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKL 346
>pdb|2CMJ|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase
pdb|2CMJ|B Chain B, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase
pdb|2CMV|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase Complexed With Cadmium And Citrate
pdb|2CMV|B Chain B, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase Complexed With Cadmium And Citrate
Length = 410
Score = 516 bits (1330), Expect = e-147, Method: Compositional matrix adjust.
Identities = 237/343 (69%), Positives = 291/343 (84%), Gaps = 2/343 (0%)
Query: 83 KVQN-PIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEA 141
K+Q +VEM GDEMTRIIW++IK+KLI PY++LD+ YDLGI NRDAT+D+VT ++AEA
Sbjct: 1 KIQGGSVVEMQGDEMTRIIWELIKEKLILPYVELDLHSYDLGIENRDATNDQVTKDAAEA 60
Query: 142 TLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPG 201
KYNV +KCATITPDE R++EF LK MW+SPNGTIRNIL GTVFRE I+C+NIPR+V G
Sbjct: 61 IKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTG 120
Query: 202 WKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFK-GPGIALAMY 260
W KPI IGRHA+GDQYRATD V+ GPGK+++ + P+DGT V V++F+ G G+A+ MY
Sbjct: 121 WVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPKDGTQKVTYMVHDFEEGGGVAMGMY 180
Query: 261 NVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHS 320
N D+SI FA SS +A SK WPLYLSTKNTILKKYDGRFKDIFQ++Y+++++ +FE +
Sbjct: 181 NQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKKYKSQFEAQN 240
Query: 321 IWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTL 380
I YEHRLIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVL+ DGKT+
Sbjct: 241 ICYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTV 300
Query: 381 EAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYML 423
EAEAAHGTVTRH+R++QKGQETSTN IASIFAW+RGL HR L
Sbjct: 301 EAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWSRGLAHRAKL 343
>pdb|3US8|A Chain A, Crystal Structure Of An Isocitrate Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3US8|B Chain B, Crystal Structure Of An Isocitrate Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 427
Score = 511 bits (1317), Expect = e-145, Method: Compositional matrix adjust.
Identities = 236/343 (68%), Positives = 281/343 (81%), Gaps = 1/343 (0%)
Query: 81 RVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAE 140
++KV NP+VE+DGDE TRIIWQ IKDKLI PYLDLD++YYDLG+ NRDATDD+VT+++A
Sbjct: 26 KIKVANPVVELDGDEXTRIIWQFIKDKLIHPYLDLDLEYYDLGVENRDATDDQVTIDAAN 85
Query: 141 ATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVP 200
A K+ V +KCATITPDE R++EF LK W+SPNGTIRNIL G +FREPI+C+N+PR+VP
Sbjct: 86 AIKKHGVGVKCATITPDEGRVEEFKLKKXWKSPNGTIRNILGGVIFREPIICKNVPRLVP 145
Query: 201 GWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMY 260
GW KPI +GRHAFGDQYRATD G GKL + F EDG +E DVY+ G G+ALA Y
Sbjct: 146 GWTKPIIVGRHAFGDQYRATDFKFPGKGKLSIKFVGEDGQ-TIEHDVYDAPGAGVALAXY 204
Query: 261 NVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHS 320
N+DESI FA +S + +K P+YLSTKNTILK YDGRFKDIFQ+V++E + +F+
Sbjct: 205 NLDESITEFARASFNYGLQRKVPVYLSTKNTILKAYDGRFKDIFQKVFDEEFAAQFKAEK 264
Query: 321 IWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTL 380
+WYEHRLIDD VA A+K GGYVWACKNYDGDVQSD++AQGFGSLGL TSVL + DGKT+
Sbjct: 265 LWYEHRLIDDXVASALKWSGGYVWACKNYDGDVQSDIVAQGFGSLGLXTSVLXTPDGKTV 324
Query: 381 EAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYML 423
EAEAAHGTVTRH+R HQKG+ETSTNSIASIFAWTRGL HR L
Sbjct: 325 EAEAAHGTVTRHYRQHQKGEETSTNSIASIFAWTRGLAHRAKL 367
>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFW|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFX|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFY|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
Length = 427
Score = 509 bits (1310), Expect = e-144, Method: Compositional matrix adjust.
Identities = 237/342 (69%), Positives = 282/342 (82%), Gaps = 2/342 (0%)
Query: 81 RVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAE 140
++KV+ P+VE+DGDEMTRIIW IK KLI PYLD+D+KYYDL + +RDAT DK+T ++AE
Sbjct: 18 KIKVKQPVVELDGDEMTRIIWDKIKKKLILPYLDVDLKYYDLSVESRDATSDKITQDAAE 77
Query: 141 ATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVP 200
A KY V IKCATITPDE R+KEF L MW+SPNGTIRNIL GTVFREPI+ IPR+VP
Sbjct: 78 AIKKYGVGIKCATITPDEARVKEFNLHKMWKSPNGTIRNILGGTVFREPIVIPRIPRLVP 137
Query: 201 GWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTG--PVELDVYNFKGPGIALA 258
W+KPI IGRHA GDQY+ATDT+I GPG L++V+ P D T P L VY++KG G+A+A
Sbjct: 138 RWEKPIIIGRHAHGDQYKATDTLIPGPGSLELVYKPSDPTTAQPQTLKVYDYKGSGVAMA 197
Query: 259 MYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEE 318
MYN DESI FA SS LA KK L+LSTKNTILKKYDGRFKDIFQ+VYE +++ KFE+
Sbjct: 198 MYNTDESIEGFAHSSFKLAIDKKLNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFEQ 257
Query: 319 HSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK 378
I YEHRLIDDMVA IKS+GG++ A KNYDGDVQSD++AQGFGSLGLMTS+L++ DGK
Sbjct: 258 LGIHYEHRLIDDMVAQMIKSKGGFIMALKNYDGDVQSDIVAQGFGSLGLMTSILVTPDGK 317
Query: 379 TLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHR 420
T E+EAAHGTVTRH+R +QKG+ETSTNSIASIFAW+RGL R
Sbjct: 318 TFESEAAHGTVTRHYRKYQKGEETSTNSIASIFAWSRGLLKR 359
>pdb|4HCX|A Chain A, Structure Of Icdh-1 From M.tuberculosis Complexed With
Nadph & Mn2+
pdb|4HCX|B Chain B, Structure Of Icdh-1 From M.tuberculosis Complexed With
Nadph & Mn2+
Length = 409
Score = 487 bits (1254), Expect = e-138, Method: Compositional matrix adjust.
Identities = 223/344 (64%), Positives = 276/344 (80%), Gaps = 1/344 (0%)
Query: 81 RVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAE 140
++KV P+VE+DGDEMTR+IW++IKD LI PYLD+ + YYDLGI +RDATDD+VT+++A
Sbjct: 6 KIKVSGPVVELDGDEMTRVIWKLIKDMLILPYLDIRLDYYDLGIEHRDATDDQVTIDAAY 65
Query: 141 ATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVP 200
A K+ V +KCATITPDE R++EF LK MW SPNGTIRNIL GT+FREPI+ N+PR+VP
Sbjct: 66 AIKKHGVGVKCATITPDEARVEEFNLKKMWLSPNGTIRNILGGTIFREPIVISNVPRLVP 125
Query: 201 GWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNF-KGPGIALAM 259
GW KPI IGRHAFGDQYRAT+ + PG + + F P DG+ P+ ++ + + G+ L M
Sbjct: 126 GWTKPIVIGRHAFGDQYRATNFKVDQPGTVTLTFTPADGSAPIVHEMVSIPEDGGVVLGM 185
Query: 260 YNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319
YN ESIR FA +S S + KWP+YLSTKNTILK YDG FKD F++VYEE ++ +FE
Sbjct: 186 YNFKESIRDFARASFSYGLNAKWPVYLSTKNTILKAYDGMFKDEFERVYEEEFKAQFEAA 245
Query: 320 SIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKT 379
+ YEHRLIDDMVA +K EGGYVWACKNYDGDVQSD +AQG+GSLGLMTSVL+++DGKT
Sbjct: 246 GLTYEHRLIDDMVAACLKWEGGYVWACKNYDGDVQSDTVAQGYGSLGLMTSVLMTADGKT 305
Query: 380 LEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYML 423
+EAEAAHGTVTRH+R +Q G+ TSTN IASIFAWTRGL+HR L
Sbjct: 306 VEAEAAHGTVTRHYRQYQAGKPTSTNPIASIFAWTRGLQHRGKL 349
>pdb|4AOY|A Chain A, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|B Chain B, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|C Chain C, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|D Chain D, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOU|A Chain A, Ctidh Bound To Nadp. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
Length = 402
Score = 406 bits (1044), Expect = e-113, Method: Compositional matrix adjust.
Identities = 189/342 (55%), Positives = 255/342 (74%), Gaps = 2/342 (0%)
Query: 79 IDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVES 138
+ ++K++ P+VEMDGDEMTRIIW++IK+ L+ PY++L+ +YYDLG+ NRD T+D+VT+++
Sbjct: 1 MSKIKMKVPLVEMDGDEMTRIIWRLIKENLLEPYIELNTEYYDLGLENRDKTEDQVTIDA 60
Query: 139 AEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRI 198
A A KY V +KCATITP+ R++E+ LK MW+SPNGTIR IL+GTVFR PI+ +I
Sbjct: 61 ARAIQKYGVGVKCATITPNAQRVEEYNLKKMWKSPNGTIRAILDGTVFRAPIVVNSIKPF 120
Query: 199 VPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALA 258
V GWKKPI I RHA+GD Y+ + + GK ++VF E+G + ++ F GPG+ +
Sbjct: 121 VKGWKKPISIARHAYGDVYKNVEYYVPSAGKAELVFTSENGEVSRQT-IHEFDGPGVIMG 179
Query: 259 MYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEE 318
M+N D+SIR+FA + + A L+ STK+TI K YD RFKDIFQ++YE +++KFE
Sbjct: 180 MHNTDKSIRSFARACFNYALDMNQDLWFSTKDTISKTYDHRFKDIFQEIYENEYKEKFEA 239
Query: 319 HSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK 378
++ Y + LIDD VA I+SEGG VWACKNYDGDV SD++A FGSL +MTSVL+S DGK
Sbjct: 240 KNLQYFYTLIDDAVARIIRSEGGMVWACKNYDGDVMSDMVASAFGSLAMMTSVLVSPDGK 299
Query: 379 TLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHR 420
E EAAHGTVTRH+ H KG+ETSTNS+A+IFAWT L+ R
Sbjct: 300 -YEFEAAHGTVTRHYYKHLKGEETSTNSMATIFAWTGALKKR 340
>pdb|1ZOR|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Thermotoga Maritima
pdb|1ZOR|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Thermotoga Maritima
Length = 399
Score = 387 bits (993), Expect = e-107, Method: Compositional matrix adjust.
Identities = 182/343 (53%), Positives = 258/343 (75%), Gaps = 7/343 (2%)
Query: 79 IDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVES 138
+++VKV+NPIVE+DGDEM R++W+MIK+KLI PYLD+ + Y+DLGI RD TDD++T+E+
Sbjct: 1 MEKVKVKNPIVELDGDEMARVMWKMIKEKLILPYLDIQLVYFDLGIKKRDETDDQITIEA 60
Query: 139 AEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRI 198
A+A KY V +KCATITPD R+KE+ LK W+SPN TIR L+GTVFR+PI+ +N+P +
Sbjct: 61 AKAIKKYGVGVKCATITPDAERVKEYNLKKAWKSPNATIRAYLDGTVFRKPIMVKNVPPL 120
Query: 199 VPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVF-DPEDGTGPVELDVYNFKGPGIAL 257
V WKKPI IGRHA+GD Y A + ++GP ++++V + E+ T L V+ F+G G+ +
Sbjct: 121 VKRWKKPIIIGRHAYGDIYNAVEAKVEGPAEVELVVRNKENKT----LLVHKFEGNGVVM 176
Query: 258 AMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFE 317
AM+N+++SIR+FA+S ++ A S+K ++ +TK+TI K Y FKDIFQ+ ++R +++ E
Sbjct: 177 AMHNLEKSIRSFAQSCINYAISEKVDIWFATKDTISKVYHAYFKDIFQEEVDKR-KEELE 235
Query: 318 EHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDG 377
+ + Y + LIDD A ++SEGG +WAC NY+GD+ SD++A GFGSLGLMTSVL+S DG
Sbjct: 236 KAGVNYRYMLIDDAAAQILRSEGGMLWACMNYEGDIMSDMIASGFGSLGLMTSVLVSPDG 295
Query: 378 KTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHR 420
E EAAHGTV RH+ + KG++TSTN ASIFAWT + R
Sbjct: 296 -VYEFEAAHGTVRRHYYRYLKGEKTSTNPTASIFAWTGAIRKR 337
>pdb|2UXQ|A Chain A, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|B Chain B, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|C Chain C, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|D Chain D, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXR|A Chain A, Complex With Isocitrate And The Protein Isocitrate
Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila
pdb|2UXR|B Chain B, Complex With Isocitrate And The Protein Isocitrate
Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila
pdb|4AOV|A Chain A, Dpidh-Nadp. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
Length = 402
Score = 345 bits (886), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 161/340 (47%), Positives = 236/340 (69%), Gaps = 2/340 (0%)
Query: 81 RVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAE 140
+++++ P+VE+DGDEMTR++W +IKDKL+ P++DL +YYDLGI RD T+D++T+++AE
Sbjct: 2 KIQMKTPLVELDGDEMTRVLWPLIKDKLLLPFIDLQTEYYDLGIEERDRTNDQITIDAAE 61
Query: 141 ATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVP 200
A KY V +K ATITP++ R++E+GLK W+SPN T+R +L+GTVFR+PI+ +NI V
Sbjct: 62 AIKKYGVGVKNATITPNQDRVEEYGLKEQWKSPNATVRAMLDGTVFRKPIMVKNIKPSVR 121
Query: 201 GWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMY 260
W+KPI +GRHA+GD Y+ + + GKL++V ++G + P I ++
Sbjct: 122 SWQKPIVVGRHAYGDFYKNAEIFAEAGGKLEIVVTDKNGK-ETRQTIMEVDEPAIVQGIH 180
Query: 261 NVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHS 320
N SI FA + + +K + +TK+TI K+YD RFK IF++++ + +++KF
Sbjct: 181 NTVASIGHFARACFEYSLDQKIDCWFATKDTISKQYDQRFKIIFEEIFAQEYKEKFAAAG 240
Query: 321 IWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTL 380
I Y + LIDD+VA +K+EGG +WACKNYDGDV SD++A FGSL +M+SVL+S G
Sbjct: 241 IEYFYTLIDDVVARMMKTEGGMLWACKNYDGDVMSDMVASAFGSLAMMSSVLVSPYG-YF 299
Query: 381 EAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHR 420
E EAAHGTV RH+ H KG+ TSTN +A I+AWT L R
Sbjct: 300 EYEAAHGTVQRHYYQHLKGERTSTNPVALIYAWTGALRKR 339
>pdb|1DR0|A Chain A, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
pdb|1DR0|B Chain B, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
Length = 346
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Query: 310 ERWRQKFEEHSIWY-----EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFG 363
E WR+ EE Y EH+ +D M + ++S + V N GD+ SDL + G
Sbjct: 193 EFWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPG 252
Query: 364 SLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYML 423
SLGL+ S L E HG+ + KG N A+I + LEH + L
Sbjct: 253 SLGLLPSASLGRGTPVF--EPVHGSAP---DIAGKG---IANPTAAILSAAMMLEHAFGL 304
Query: 424 V 424
V
Sbjct: 305 V 305
>pdb|1XAC|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (100k) Structure.
pdb|1XAD|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (150k) Structure
Length = 345
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Query: 310 ERWRQKFEEHSIWY-----EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFG 363
E WR+ EE Y EH+ +D M + ++S + V N GD+ SDL + G
Sbjct: 193 EFWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPG 252
Query: 364 SLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYML 423
SLGL+ S L E HG+ + KG N A+I + LEH + L
Sbjct: 253 SLGLLPSASLGRGTPVF--EPVHGSAP---DIAGKG---IANPTAAILSAAMMLEHAFGL 304
Query: 424 V 424
V
Sbjct: 305 V 305
>pdb|2Y3Z|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Apo Enzyme
pdb|2Y40|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y40|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y41|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y41|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y42|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|4F7I|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
Length = 359
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Query: 310 ERWRQKFEEHSIWY-----EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFG 363
E WR+ EE Y EH+ +D M + ++S + V N GD+ SDL + G
Sbjct: 196 EFWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPG 255
Query: 364 SLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYML 423
SLGL+ S L E HG+ + KG N A+I + LEH + L
Sbjct: 256 SLGLLPSASLGRGTPVF--EPVHGSAP---DIAGKG---IANPTAAILSAAMMLEHAFGL 307
Query: 424 V 424
V
Sbjct: 308 V 308
>pdb|1DPZ|A Chain A, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
pdb|1DPZ|B Chain B, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
Length = 349
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Query: 310 ERWRQKFEEHSIWY-----EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFG 363
E WR+ EE Y EH+ +D M + ++S + V N GD+ SDL + G
Sbjct: 193 EFWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPG 252
Query: 364 SLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYML 423
SLGL+ S L E HG+ + KG N A+I + LEH + L
Sbjct: 253 SLGLLPSASLGRGTPVF--EPVHGSAP---DIAGKG---IANPTAAILSAAMMLEHAFGL 304
Query: 424 V 424
V
Sbjct: 305 V 305
>pdb|1DR8|A Chain A, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
pdb|1DR8|B Chain B, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
Length = 344
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Query: 310 ERWRQKFEEHSIWY-----EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFG 363
E WR+ EE Y EH+ +D M + ++S + V N GD+ SDL + G
Sbjct: 193 EFWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPG 252
Query: 364 SLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYML 423
SLGL+ S L E HG+ + KG N A+I + LEH + L
Sbjct: 253 SLGLLPSASLGRGTPVF--EPVHGSAP---DIAGKG---IANPTAAILSAAMMLEHAFGL 304
Query: 424 V 424
V
Sbjct: 305 V 305
>pdb|1OSJ|A Chain A, Structure Of 3-isopropylmalate Dehydrogenase
pdb|1OSJ|B Chain B, Structure Of 3-isopropylmalate Dehydrogenase
Length = 345
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Query: 310 ERWRQKFEEHSIWY-----EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFG 363
E WR+ EE Y EH+ +D M + ++S + V N GD+ SDL + G
Sbjct: 193 EFWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPG 252
Query: 364 SLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYML 423
SLGL+ S L E HG+ + KG N A+I + LEH + L
Sbjct: 253 SLGLLPSASLGRGTPVF--EPVHGSAP---DIAGKG---IANPTAAILSAAMMLEHAFGL 304
Query: 424 V 424
V
Sbjct: 305 V 305
>pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1HEX|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With Nad+: Ligand-Induced Loop-Closing And Mechanism For
Cofactor Specificity
pdb|1XAA|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (100k)
Structure
pdb|1XAB|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (150k)
Structure
pdb|2ZTW|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With The Inhibitor And Nad+
Length = 345
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Query: 310 ERWRQKFEEHSIWY-----EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFG 363
E WR+ EE Y EH+ +D M + ++S + V N GD+ SDL + G
Sbjct: 193 EFWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPG 252
Query: 364 SLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYML 423
SLGL+ S L E HG+ + KG N A+I + LEH + L
Sbjct: 253 SLGLLPSASLGRGTPVF--EPVHGSAP---DIAGKG---IANPTAAILSAAMMLEHAFGL 304
Query: 424 V 424
V
Sbjct: 305 V 305
>pdb|1IPD|A Chain A, Three-Dimensional Structure Of A Highly Thermostable
Enzyme, 3- Isopropylmalate Dehydrogenase Of Thermus
Thermophilus At 2.2 Angstroms Resolution
Length = 345
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Query: 310 ERWRQKFEEHSIWY-----EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFG 363
E WR+ EE Y EH+ +D M + ++S + V N GD+ SDL + G
Sbjct: 193 EFWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPG 252
Query: 364 SLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYML 423
SLGL+ S L E HG+ + KG N A+I + LEH + L
Sbjct: 253 SLGLLPSASLGRGTPVF--EPVHGSAP---DIAGKG---IANPTAAILSAAMMLEHAFGL 304
Query: 424 V 424
V
Sbjct: 305 V 305
>pdb|1GC8|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
pdb|1GC8|B Chain B, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
Length = 345
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Query: 310 ERWRQKFEEHSIWY-----EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFG 363
E WR+ EE Y EH+ +D M + ++S + V N GD+ SDL + G
Sbjct: 193 EFWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPG 252
Query: 364 SLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYML 423
SLGL+ S L E HG+ + KG N A+I + LEH + L
Sbjct: 253 SLGLLPSASLGRGTPVF--EPVHGSAP---DIAGKG---IANPTAAILSAAMMLEHAFGL 304
Query: 424 V 424
V
Sbjct: 305 V 305
>pdb|1G2U|A Chain A, The Structure Of The Mutant, A172v, Of 3-Isopropylmalate
Dehydrogenase From Thermus Thermophilus Hb8 : Its
Thermostability And Structure
Length = 345
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Query: 310 ERWRQKFEEHSIWY-----EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFG 363
E WR+ EE Y EH+ +D M + ++S + V N GD+ SDL + G
Sbjct: 193 EFWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPG 252
Query: 364 SLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYML 423
SLGL+ S L E HG+ + KG N A+I + LEH + L
Sbjct: 253 SLGLLPSASLGRGTPVF--EPVHGSAP---DIAGKG---IANPTAAILSAAMMLEHAFGL 304
Query: 424 V 424
V
Sbjct: 305 V 305
>pdb|1GC9|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Gly
Length = 345
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Query: 310 ERWRQKFEEHSIWY-----EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFG 363
E WR+ EE Y EH+ +D M + ++S + V N GD+ SDL + G
Sbjct: 193 EFWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPG 252
Query: 364 SLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYML 423
SLGL+ S L E HG+ + KG N A+I + LEH + L
Sbjct: 253 SLGLLPSASLGRGTPVF--EPVHGSAP---DIAGKG---IANPTAAILSAAMMLEHAFGL 304
Query: 424 V 424
V
Sbjct: 305 V 305
>pdb|1IDM|A Chain A, 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera
Length = 343
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Query: 310 ERWRQKFEEHSIWY-----EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFG 363
E WR+ EE Y EH+ +D M + ++S + V N GD+ SDL + G
Sbjct: 191 EFWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPG 250
Query: 364 SLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYML 423
SLGL+ S L E HG+ + KG N A+I + LEH + L
Sbjct: 251 SLGLLPSASLGRGTPVF--EPVHGSAP---DIAGKG---IANPTAAILSAAMMLEHAFGL 302
Query: 424 V 424
V
Sbjct: 303 V 303
>pdb|2D1C|A Chain A, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
pdb|2D1C|B Chain B, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
Length = 496
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 284 LYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIK-SEGGY 342
++ +TK+ I+K +G K F+QV +E I H ++D+ +K E
Sbjct: 186 VHCATKSNIMKLAEGTLKRAFEQVAQEY-------PDIEAVHIIVDNAAHQLVKRPEQFE 238
Query: 343 VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRH 392
V N +GD+ SDL + G LG S + ++ EA HG+ ++
Sbjct: 239 VIVTTNMNGDILSDLTSGLIGGLGFAPSANIGNEVAIF--EAVHGSAPKY 286
>pdb|1WAL|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M219a)from
Thermus Thermophilus
Length = 345
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 52/121 (42%), Gaps = 14/121 (11%)
Query: 310 ERWRQKFEEHSIWY-----EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFG 363
E WR+ EE Y EH+ +D + ++S + V N GD+ SDL + G
Sbjct: 193 EFWRKTVEEVGRGYPDVALEHQYVDAAAMHLVRSPARFDVVVTGNIFGDILSDLASVLPG 252
Query: 364 SLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYML 423
SLGL+ S L E HG+ + KG N A+I + LEH + L
Sbjct: 253 SLGLLPSASLGRGTPVF--EPVHGSAP---DIAGKG---IANPTAAILSAAMMLEHAFGL 304
Query: 424 V 424
V
Sbjct: 305 V 305
>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
pdb|3U1H|B Chain B, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
Length = 390
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 312 WRQKFEEHSIWY-----EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSL 365
WR+ EE + Y EH L+D+ I++ + V +N GD+ SD + GSL
Sbjct: 221 WREVAEEVAKEYPDVELEHMLVDNAAMQLIRNPRQFDVIVTENMFGDILSDEASMITGSL 280
Query: 366 GLMTSVLLSSDGKTLEAEAAHGT 388
G++ S LS+DG L E HG+
Sbjct: 281 GMLPSASLSTDGLGL-YEPVHGS 302
>pdb|3VKZ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At Atmospheric Pressure
pdb|3VL2|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 160 Mpa
pdb|3VL3|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 340 Mpa
pdb|3VL4|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 410 Mpa
pdb|3VL6|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 580 Mpa
pdb|3VL7|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 650 Mpa
pdb|3VMJ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1
Length = 375
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 312 WRQKFEEHSIWY-----EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSL 365
WRQ EE ++ + EH ID+ ++ + V C N GD+ SD +A GS+
Sbjct: 214 WRQVVEEVAVDFPDVELEHIYIDNATMQLLRRPDEFDVMLCSNLFGDILSDEIAMLTGSM 273
Query: 366 GLMTSVLLSSDG 377
GL++S ++S G
Sbjct: 274 GLLSSASMNSTG 285
>pdb|4AJB|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii) And
Thionadp
pdb|4AJC|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate, Calcium(Ii)
And Adenine Nucleotide Phosphate
pdb|4AJR|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate,
Magnesium(Ii) And Nadph - The Product Complex
pdb|4AJS|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii),
Adenosine 2',5'-Biphosphate And
Ribosylnicotinamide-5'-Phosphate
Length = 416
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 16/121 (13%)
Query: 286 LSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR--------LIDDMVAYA-- 335
L K I+K +G FKD Q+ E + + + W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 336 ----IKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTR 391
++ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 392 H 392
+
Sbjct: 345 Y 345
>pdb|1IDD|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Apo Enzyme
pdb|1IDE|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Steady-State
Intermediate Complex (Laue Determination)
Length = 416
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 16/121 (13%)
Query: 286 LSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR--------LIDDMVAYA-- 335
L K I+K +G FKD Q+ E + + + W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 336 ----IKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTR 391
++ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 392 H 392
+
Sbjct: 345 Y 345
>pdb|1GRP|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 16/121 (13%)
Query: 286 LSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR--------LIDDMVAYA-- 335
L K I+K +G FKD Q+ E + + + W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 336 ----IKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTR 391
++ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 392 H 392
+
Sbjct: 345 Y 345
>pdb|1BL5|A Chain A, Isocitrate Dehydrogenase From E. Coli Single Turnover Laue
Structure Of Rate-limited Product Complex, 10 Msec Time
Resolution
Length = 414
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 16/121 (13%)
Query: 286 LSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR--------LIDDMVAYA-- 335
L K I+K +G FKD Q+ E + + + W + + +I D++A A
Sbjct: 225 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 284
Query: 336 ----IKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTR 391
++ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 285 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 342
Query: 392 H 392
+
Sbjct: 343 Y 343
>pdb|1P8F|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB1|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB3|A Chain A, Sites Of Binding And Orientation In A Four Location Model
For Protein Stereospecificity.
pdb|1AI2|A Chain A, Isocitrate Dehydrogenase Complexed With Isocitrate, Nadp+,
And Calcium (flash-cooled)
pdb|1AI3|A Chain A, Orbital Steering In The Catalytic Power Of Enzymes: Small
Structural Changes With Large Catalytic Consequences
pdb|1IKA|A Chain A, Structure Of Isocitrate Dehydrogenase With
Alpha-Ketoglutarate At 2.7 Angstroms Resolution:
Conformational Changes Induced By Decarboxylation Of
Isocitrate
pdb|1SJS|A Chain A, Access To Phosphorylation In Isocitrate Dehydrogenase May
Occur By Domain Shifting
pdb|3ICD|A Chain A, Structure Of A Bacterial Enzyme Regulated By
Phosphorylation, Isocitrate Dehydrogenase
pdb|5ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|9ICD|A Chain A, Catalytic Mechanism Of Nadp+-Dependent Isocitrate
Dehydrogenase: Implications From The Structures Of
Magnesium-Isocitrate And Nadp+ Complexes
pdb|3LCB|C Chain C, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|3LCB|D Chain D, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|4AJ3|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Nadp - The
Pseudo-Michaelis Complex
pdb|4AJA|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Thionadp
Length = 416
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 16/121 (13%)
Query: 286 LSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR--------LIDDMVAYA-- 335
L K I+K +G FKD Q+ E + + + W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 336 ----IKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTR 391
++ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 392 H 392
+
Sbjct: 345 Y 345
>pdb|1GRO|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 16/121 (13%)
Query: 286 LSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR--------LIDDMVAYA-- 335
L K I+K +G FKD Q+ E + + + W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 336 ----IKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTR 391
++ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 392 H 392
+
Sbjct: 345 Y 345
>pdb|4ICD|A Chain A, Regulation Of Isocitrate Dehydrogenase By Phosphorylation
Involves No Long-Range Conformational Change In The Free
Enzyme
Length = 416
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 16/121 (13%)
Query: 286 LSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR--------LIDDMVAYA-- 335
L K I+K +G FKD Q+ E + + + W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 336 ----IKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTR 391
++ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 392 H 392
+
Sbjct: 345 Y 345
>pdb|6ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 16/121 (13%)
Query: 286 LSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR--------LIDDMVAYA-- 335
L K I+K +G FKD Q+ E + + + W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 336 ----IKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTR 391
++ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 392 H 392
+
Sbjct: 345 Y 345
>pdb|1HJ6|A Chain A, Isocitrate Dehydrogenase S113e Mutant Complexed With
Isopropylmalate, Nadp+ And Magnesium (Flash-Cooled)
pdb|7ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|8ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 16/121 (13%)
Query: 286 LSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR--------LIDDMVAYA-- 335
L K I+K +G FKD Q+ E + + + W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 336 ----IKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTR 391
++ V AC N +GD SD LA G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 392 H 392
+
Sbjct: 345 Y 345
>pdb|3VML|A Chain A, Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella
Oneidensis Mr-1 (O) And Shewanella Benthica Db21 Mt-2
(M) From N-Terminal: 20% O Middle 70% M Residual 10% O
Length = 375
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 312 WRQKFEEHSIWY-----EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSL 365
WR+ EE + Y EH ID+ ++ + V C N GD+ SD +A GS+
Sbjct: 214 WREVVEEVAKDYPDVELEHIYIDNATMQLLRRPNEFDVMLCSNLFGDIVSDEIAMLTGSM 273
Query: 366 GLMTSVLLSSDG 377
GL+ S+ ++S G
Sbjct: 274 GLLASISMNSQG 285
>pdb|3VMK|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
pdb|3VMK|B Chain B, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
Length = 375
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 312 WRQKFEEHSIWY-----EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSL 365
WR+ EE + Y EH ID+ ++ + V C N GD+ SD +A GS+
Sbjct: 214 WREVVEEVAKDYPDVELEHIYIDNATMQLLRRPNEFDVMLCSNLFGDIVSDEIAMLTGSM 273
Query: 366 GLMTSVLLSSDG 377
GL+ S+ ++S G
Sbjct: 274 GLLASISMNSQG 285
>pdb|1V5B|A Chain A, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|B Chain B, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|C Chain C, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|D Chain D, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|E Chain E, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|F Chain F, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|G Chain G, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|H Chain H, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
Length = 366
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 312 WRQKFEEHSIWY-----EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSL 365
WR+ EE + Y H L+D I + G + V +N GD+ SDL + GSL
Sbjct: 200 WREIAEETAKKYPDVELSHMLVDSTAMQLIANPGQFDVIVTENMFGDILSDLASVITGSL 259
Query: 366 GLMTSVLLSSD 376
G++ S L SD
Sbjct: 260 GMLPSASLRSD 270
>pdb|1CW7|A Chain A, Low Temperature Structure Of Wild-Type Idh Complexed With
Mg- Isocitrate
Length = 416
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 16/117 (13%)
Query: 286 LSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR--------LIDDMVAYA-- 335
L K I+K +G FKD Q+ E + + + W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 336 ----IKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGT 388
++ V AC N +GD SD LA G +G+ + + EA HGT
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGT 341
>pdb|1ISO|A Chain A, Isocitrate Dehydrogenase: Structure Of An Engineered
Nadp+--> Nad+ Specificity-Reversal Mutant
Length = 416
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 16/117 (13%)
Query: 286 LSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR--------LIDDMVAYA-- 335
L K I+K +G FKD Q+ E + + + W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 336 ----IKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGT 388
++ V AC N +GD SD LA G +G+ + + EA HGT
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDEYALF--EATHGT 341
>pdb|1CW1|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase Mutant K230m
Bound To Isocitrate And Mn2+
pdb|1CW4|A Chain A, Crystal Structure Of K230m Isocitrate Dehydrogenase In
Complex With Alpha-Ketoglutarate
pdb|1IDC|A Chain A, Isocitrate Dehydrogenase From E.coli (mutant K230m),
Steady-state Intermediate Complex Determined By Laue
Crystallography
pdb|1IDF|A Chain A, Isocitrate Dehydrogenase K230m Mutant Apo Enzyme
Length = 416
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 16/117 (13%)
Query: 290 NTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR--------LIDDMVAYA------ 335
I+K +G FKD Q+ E + + + W + + +I D++A A
Sbjct: 231 GNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFLQQIL 290
Query: 336 IKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRH 392
++ V AC N +GD SD LA G +G+ + + EA HGT ++
Sbjct: 291 LRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPKY 345
>pdb|1A05|A Chain A, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
pdb|1A05|B Chain B, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
Length = 358
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 78/179 (43%), Gaps = 18/179 (10%)
Query: 242 PVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFK 301
P L+V + K G +Y+ DE IR A + A ++ L K +L+
Sbjct: 144 PRGLEVIDGKRRGFNTMVYDEDE-IRRIAHVAFRAAQGRRKQLCSVDKANVLET-----T 197
Query: 302 DIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQ 360
++++V E R + + H +D+ I++ + V N GD+ SD +Q
Sbjct: 198 RLWREVVTEVAR---DYPDVRLSHMYVDNAAMQLIRAPAQFDVLLTGNMFGDILSDEASQ 254
Query: 361 GFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEH 419
GS+G++ S L +G+ + E HG+ GQ+ + N +A+I + L H
Sbjct: 255 LTGSIGMLPSASL-GEGRAMY-EPIHGSAP-----DIAGQDKA-NPLATILSVAMMLRH 305
>pdb|2AYQ|A Chain A, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
pdb|2AYQ|B Chain B, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
Length = 366
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 312 WRQKFEEHSIWY-----EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSL 365
WR+ EE + Y H L+D I + G + V +N GD+ SD + GSL
Sbjct: 200 WREIAEETAKKYPDVELSHMLVDSTSMQLIANPGQFDVIVTENMFGDILSDEASVITGSL 259
Query: 366 GLMTSVLLSSD 376
G++ S L SD
Sbjct: 260 GMLPSASLRSD 270
>pdb|1CM7|A Chain A, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
pdb|1CM7|B Chain B, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
Length = 363
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 312 WRQKFEEHSIWY-----EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSL 365
WR+ E + Y H ID+ IK + V C N GD+ SD A GS+
Sbjct: 205 WREIVNEIATEYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSM 264
Query: 366 GLMTSVLLSSDG 377
G++ S L+ G
Sbjct: 265 GMLPSASLNEQG 276
>pdb|1V53|A Chain A, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
pdb|1V53|B Chain B, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
Length = 366
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 312 WRQKFEEHSIWY-----EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSL 365
WR+ EE + Y H L+D I + G + V +N GD+ SD + GSL
Sbjct: 200 WREIAEETAKKYPDVELSHMLVDSTSMQLIANPGQFDVIVTENMFGDILSDEASVITGSL 259
Query: 366 GLMTSVLLSSD 376
G++ S L SD
Sbjct: 260 GMLPSASLRSD 270
>pdb|1WYR|A Chain A, Solution Structure Of The Ch Domain Of Human Rho Guanine
Nucleotide Exchange Factor 6
Length = 121
Score = 32.7 bits (73), Expect = 0.50, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 172 SPNGTI---RNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPG 228
SP TI L ++ +LC+ I R++PG + C+ D + +KG
Sbjct: 23 SPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVEKFCLDPQTEADCINNINDFLKGCA 82
Query: 229 KLKM-VFDPED 238
L++ +FDP+D
Sbjct: 83 TLQVEIFDPDD 93
>pdb|1CNZ|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
pdb|1CNZ|B Chain B, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
Length = 363
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 312 WRQKFEEHSIWY-----EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSL 365
WR+ + + Y H ID+ IK + V C N GD+ SD A GS+
Sbjct: 205 WREIVNDVAKTYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSM 264
Query: 366 GLMTSVLLSSDG 377
G++ S L+ G
Sbjct: 265 GMLPSASLNEQG 276
>pdb|2EJX|A Chain A, Crystal Structure Of The Hypothetical Protein St0812 From
Sulfolobus Tokodaii
Length = 139
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 184 TVFREPILCQNIPRIVPGWKKPICIGRHAFGDQ-------YRATDTVIKGPGKLKMVFDP 236
T+F +P IP+I PG CI F + Y+ V KG ++++++D
Sbjct: 22 TIFSDPAF--TIPQIFPGIASIKCIEPEIFEAEGKFLAFSYKVKGRVYKGVDEVRIIYDS 79
Query: 237 EDGTG 241
+ G G
Sbjct: 80 DRGNG 84
>pdb|1HQS|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
pdb|1HQS|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
Length = 423
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 343 VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQET 402
V A N +GD SD LA G +G+ ++ + EA HGT ++ L +
Sbjct: 302 VVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLDK----- 356
Query: 403 STNSIASIFAWTRGLEH 419
N + I + LEH
Sbjct: 357 -VNPSSVILSGVLLLEH 372
>pdb|2HE3|A Chain A, Crystal Structure Of The Selenocysteine To Cysteine Mutant
Of Human Glutathionine Peroxidase 2 (Gpx2)
Length = 208
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 119 YYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLK 167
+YDL +N D A L NVA C T T D T++ E +
Sbjct: 28 FYDLSAINLDGEKVDFNTFRGRAVLIENVASLCGTTTRDFTQLNELQCR 76
>pdb|1WPW|A Chain A, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
pdb|1WPW|B Chain B, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
Length = 336
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 12/121 (9%)
Query: 269 FAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLI 328
A+ ++ A ++ + K +++ DG F + + V + + + Y +
Sbjct: 149 IAKVGLNFALRRRKKVTCVHKANVMRITDGLFAEACRSVLKGK---------VEYSEMYV 199
Query: 329 DDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHG 387
D A +++ + V +N GD+ SD +Q GSLG+ S + D K L E HG
Sbjct: 200 DAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAGSLGIAPSANI-GDKKAL-FEPVHG 257
Query: 388 T 388
Sbjct: 258 A 258
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,211,939
Number of Sequences: 62578
Number of extensions: 583352
Number of successful extensions: 1101
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1055
Number of HSP's gapped (non-prelim): 64
length of query: 509
length of database: 14,973,337
effective HSP length: 103
effective length of query: 406
effective length of database: 8,527,803
effective search space: 3462288018
effective search space used: 3462288018
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)