Query 010485
Match_columns 509
No_of_seqs 193 out of 1461
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 01:04:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010485.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010485hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03065 isocitrate dehydrogen 100.0 1E-120 2E-125 960.7 41.7 462 20-486 13-475 (483)
2 PTZ00435 isocitrate dehydrogen 100.0 3E-108 7E-113 856.7 39.0 399 80-485 4-407 (413)
3 PRK08299 isocitrate dehydrogen 100.0 5E-108 1E-112 853.6 39.4 399 80-486 2-400 (402)
4 COG0473 LeuB Isocitrate/isopro 100.0 2E-108 4E-113 835.3 32.6 338 84-485 2-346 (348)
5 TIGR00127 nadp_idh_euk isocitr 100.0 4E-107 9E-112 847.3 38.5 398 80-485 1-404 (409)
6 PLN00096 isocitrate dehydrogen 100.0 1E-106 3E-111 835.5 34.2 379 89-484 2-393 (393)
7 PLN00118 isocitrate dehydrogen 100.0 9E-104 2E-108 816.3 35.8 329 84-484 40-372 (372)
8 PRK08997 isocitrate dehydrogen 100.0 1E-103 2E-108 807.4 35.5 330 84-484 1-334 (334)
9 PRK14025 multifunctional 3-iso 100.0 4E-102 8E-107 795.1 34.7 322 86-484 2-330 (330)
10 PLN00103 isocitrate dehydrogen 100.0 2E-101 5E-106 805.2 39.7 379 79-486 3-408 (410)
11 PRK08194 tartrate dehydrogenas 100.0 7E-102 2E-106 799.3 34.9 336 86-485 4-350 (352)
12 TIGR02089 TTC tartrate dehydro 100.0 2E-101 5E-106 796.1 34.4 336 86-484 4-352 (352)
13 PRK06451 isocitrate dehydrogen 100.0 1E-100 3E-105 802.3 35.3 354 88-484 26-408 (412)
14 PRK07006 isocitrate dehydrogen 100.0 1E-100 3E-105 802.2 35.4 359 88-484 22-409 (409)
15 PLN02329 3-isopropylmalate deh 100.0 1E-100 2E-105 800.3 33.8 344 84-485 45-402 (409)
16 PRK09222 isocitrate dehydrogen 100.0 1E-100 2E-105 812.4 34.3 347 84-497 3-354 (482)
17 TIGR00183 prok_nadp_idh isocit 100.0 3E-100 6E-105 802.6 35.8 361 88-484 29-416 (416)
18 TIGR02924 ICDH_alpha isocitrat 100.0 2E-100 3E-105 808.9 33.8 342 87-495 2-348 (473)
19 TIGR00175 mito_nad_idh isocitr 100.0 1E-99 2E-104 779.6 34.9 325 86-484 4-333 (333)
20 PLN00123 isocitrate dehydrogen 100.0 1.1E-99 2E-104 782.4 34.9 321 86-484 31-359 (360)
21 TIGR00169 leuB 3-isopropylmala 100.0 9E-100 2E-104 783.4 34.4 335 87-484 1-349 (349)
22 KOG1526 NADP-dependent isocitr 100.0 4E-100 8E-105 757.5 26.5 407 77-487 10-416 (422)
23 PRK00772 3-isopropylmalate deh 100.0 4.1E-99 9E-104 780.4 34.1 338 85-485 2-356 (358)
24 PRK03437 3-isopropylmalate deh 100.0 4.9E-99 1E-103 776.3 34.1 330 86-484 5-344 (344)
25 TIGR02088 LEU3_arch isopropylm 100.0 1.9E-98 4E-103 766.6 33.0 319 88-481 1-322 (322)
26 KOG0785 Isocitrate dehydrogena 100.0 1.9E-98 4E-103 746.8 25.3 327 85-484 35-365 (365)
27 PRK07362 isocitrate dehydrogen 100.0 2E-97 4E-102 778.5 33.6 360 88-484 31-474 (474)
28 COG0538 Icd Isocitrate dehydro 100.0 3.5E-95 8E-100 741.0 31.3 363 88-485 21-407 (407)
29 PF00180 Iso_dh: Isocitrate/is 100.0 9.2E-96 2E-100 755.6 23.2 331 87-480 1-348 (348)
30 KOG0784 Isocitrate dehydrogena 100.0 4.5E-84 9.7E-89 650.6 25.6 331 80-485 37-373 (375)
31 KOG0786 3-isopropylmalate dehy 100.0 1.7E-78 3.7E-83 591.3 21.3 318 84-458 3-344 (363)
32 PF03971 IDH: Monomeric isocit 96.7 0.026 5.7E-07 62.7 14.0 182 254-450 450-641 (735)
33 TIGR00178 monomer_idh isocitra 96.3 0.066 1.4E-06 59.8 13.6 174 262-450 462-645 (741)
34 COG2838 Icd Monomeric isocitra 93.2 1.4 3.1E-05 48.7 13.1 182 255-449 457-647 (744)
35 PF04166 PdxA: Pyridoxal phosp 92.8 0.082 1.8E-06 54.9 3.1 135 260-415 151-296 (298)
36 PRK00232 pdxA 4-hydroxythreoni 91.6 0.13 2.8E-06 54.3 2.9 140 260-419 178-326 (332)
37 PRK03371 pdxA 4-hydroxythreoni 91.5 0.14 3.1E-06 53.8 3.0 139 260-417 177-323 (326)
38 PRK03743 pdxA 4-hydroxythreoni 91.2 0.15 3.3E-06 53.7 2.9 141 260-419 178-326 (332)
39 PRK01909 pdxA 4-hydroxythreoni 91.1 0.16 3.4E-06 53.5 2.9 141 260-419 173-322 (329)
40 PRK03946 pdxA 4-hydroxythreoni 91.1 0.16 3.5E-06 53.0 2.9 138 260-419 158-303 (307)
41 PRK05312 pdxA 4-hydroxythreoni 90.8 0.17 3.8E-06 53.4 2.9 140 260-419 182-331 (336)
42 COG1995 PdxA Pyridoxal phospha 90.8 0.17 3.6E-06 53.1 2.7 49 364-418 276-324 (332)
43 PRK02746 pdxA 4-hydroxythreoni 90.7 0.18 3.9E-06 53.4 2.9 145 260-419 180-339 (345)
44 TIGR00557 pdxA 4-hydroxythreon 90.4 0.2 4.3E-06 52.6 2.9 139 260-417 170-317 (320)
45 TIGR00127 nadp_idh_euk isocitr 86.9 0.36 7.8E-06 52.3 2.0 21 203-223 140-161 (409)
46 PLN00103 isocitrate dehydrogen 80.5 1.1 2.4E-05 48.6 2.4 39 201-239 125-163 (410)
47 TIGR00178 monomer_idh isocitra 47.2 89 0.0019 36.0 8.7 115 209-325 173-295 (741)
48 COG0655 WrbA Multimeric flavod 41.7 1.3E+02 0.0027 29.1 8.1 76 94-183 13-100 (207)
49 PRK03371 pdxA 4-hydroxythreoni 39.5 19 0.00041 38.2 2.1 22 84-105 1-24 (326)
50 PF03971 IDH: Monomeric isocit 38.0 55 0.0012 37.6 5.4 117 207-325 167-291 (735)
51 PTZ00435 isocitrate dehydrogen 37.7 19 0.00041 39.4 1.8 18 203-220 143-161 (413)
52 KOG1671 Ubiquinol cytochrome c 35.1 21 0.00046 35.4 1.5 43 336-401 141-185 (210)
53 KOG3752 Ribonuclease H [Replic 32.9 51 0.0011 35.6 4.0 64 261-331 256-320 (371)
54 COG0372 GltA Citrate synthase 31.4 50 0.0011 35.9 3.8 131 326-509 181-329 (390)
55 PRK10569 NAD(P)H-dependent FMN 29.4 1.6E+02 0.0034 28.5 6.5 84 87-184 2-92 (191)
56 cd01989 STK_N The N-terminal d 27.4 1.9E+02 0.0041 25.4 6.2 26 264-289 10-35 (146)
57 PRK05312 pdxA 4-hydroxythreoni 26.5 42 0.00092 35.8 2.1 20 86-105 4-25 (336)
58 KOG1014 17 beta-hydroxysteroid 26.2 99 0.0021 32.8 4.7 34 272-313 65-98 (312)
59 PRK00232 pdxA 4-hydroxythreoni 25.1 48 0.001 35.3 2.2 20 86-105 5-26 (332)
60 PRK03743 pdxA 4-hydroxythreoni 24.8 47 0.001 35.3 2.1 20 86-105 4-25 (332)
61 PRK02746 pdxA 4-hydroxythreoni 24.0 51 0.0011 35.3 2.2 21 85-105 9-31 (345)
62 KOG2586 Pyridoxamine-phosphate 23.5 52 0.0011 32.9 2.0 72 298-411 38-109 (228)
63 TIGR03567 FMN_reduc_SsuE FMN r 22.3 4.2E+02 0.0092 24.7 7.9 82 88-183 2-90 (171)
64 PF00582 Usp: Universal stress 20.5 1E+02 0.0022 25.6 3.0 27 262-288 11-37 (140)
65 PRK01909 pdxA 4-hydroxythreoni 20.2 66 0.0014 34.2 2.1 19 87-105 7-27 (329)
66 PRK03946 pdxA 4-hydroxythreoni 20.0 65 0.0014 34.0 2.0 18 87-104 3-22 (307)
No 1
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=1.1e-120 Score=960.74 Aligned_cols=462 Identities=76% Similarity=1.167 Sum_probs=416.8
Q ss_pred hhhhhhccccccccccCCCcccccCCCCccccccc-cchhhhhccccchhhhhhhcccccccceeccccEEEEcCCCcHH
Q 010485 20 AAATTKMMSSSTVAVKNPRWSLCSSNNSGLFSGHV-NNRVSFRNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTR 98 (509)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~~I~vLpGDGIGp 98 (509)
..+...|+++++++..||.++..+.+ +.|++.+ .+...+......+..-|++++.....||+|.+||++|+||||||
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~piv~~~GDem~r 90 (483)
T PLN03065 13 RPALALMPSSSSSAAANPLLASNPCR--GIFNGGLSKNRRAFHVQFHRASSVRCFASAAAADRIKVQNPIVEMDGDEMTR 90 (483)
T ss_pred chhhhhcccccchhhcCcccccCchh--hhccccccccccccccccccccchhhhcchhhhccccccCCeEEecCCcchH
Confidence 33456788888999999999988865 4555443 44444444554555667775554357999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchhhhhcccccCCCCchhHh
Q 010485 99 IIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIR 178 (509)
Q Consensus 99 EI~~~~~~~l~~~~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~~~~e~~L~~~~~S~n~~LR 178 (509)
|||+.++++|+.++++++|+|+|+|.+++++||+++|+|++++||++||+||||++||+++|++||+|+++|+|||++||
T Consensus 91 ~i~~~i~~~li~p~~di~~~~~dlG~e~rd~Tgd~v~~da~~aikk~~v~lKgAt~TP~~~rv~e~~lk~~w~SpN~tiR 170 (483)
T PLN03065 91 VIWQMIKDKLIFPYLDLDIKYFDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKSMWRSPNGTIR 170 (483)
T ss_pred HHHHHHHHHHhcCCCCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCccccccccccccccCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCceEEeeccccCCCCCCCCCCCCCEEEEecccCccccccceeecCCCceeeeecCCCCCCceeeeeeccCCCceeee
Q 010485 179 NILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALA 258 (509)
Q Consensus 179 k~LdLyanvRPi~~k~lp~l~~~~~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~g~~~~~~~v~~~~~~~v~~~ 258 (509)
++||||+|+|||.++++|++.|+|+.||+|.|||+||+|.++|+.+.++|++++.|++++++......+++|+++++++.
T Consensus 171 ~~Ldl~v~rrPi~~~ni~r~vpg~~~pI~i~Rha~gd~Y~~iD~vi~~~g~~~~~~~rEnte~~~e~~v~~f~~~gva~~ 250 (483)
T PLN03065 171 NILNGTVFREPILCKNIPRLVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFVPEDGNAPVELDVYDFKGPGVALA 250 (483)
T ss_pred HHcCCeEEeeeeeccccCccCCCCCCCeEEeecccCCCcCceEEEEecCCeeEEEeecCCCCCcceeEeeccCCCCeEEE
Confidence 99999999999988999999999999999999999999999999999999999999999886666777888998899988
Q ss_pred eccChHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchhHHHHHHHHHHHhhhhccCCCCeeEeeehHHHHHHHHhhC
Q 010485 259 MYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKS 338 (509)
Q Consensus 259 ~~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~~PdI~~e~~lVDa~amqlVk~ 338 (509)
++||+++||||||+||+||++|+++||++||+||||.|||+|+++|+||++++||++|.+.+|+|+|+|||+||||||++
T Consensus 251 ~~nT~~sieriAr~AF~yA~~rk~~Vt~v~KaNILK~~DGlF~dif~eVa~~eyk~~yp~~~I~~e~~lIDa~~~~lvk~ 330 (483)
T PLN03065 251 MYNVDESIRAFAESSMAMALQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEQWKQKFEEHSIWYEHRLIDDMVAYAVKS 330 (483)
T ss_pred EEECHHHHHHHHHHHHHHHHHcCCCEEEEeCCCcccchHHHHHHHHHHHHHHhhhhcCCCCCceEEeeeHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999989999995558999999999999999999
Q ss_pred CCccEEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCCcccccccCCCCCcChhHHHHHHHHHHH
Q 010485 339 EGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLE 418 (509)
Q Consensus 339 P~~FVIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd~~~~~IAGk~i~ANPiA~IlS~amML~ 418 (509)
|++|||||+|||||||||++|+++|||||+||+|+|+++++++|||+|||||||||+|||||+++|||+|+||||+|||+
T Consensus 331 P~~FViv~~NlfGDIlSDl~A~l~GsLGl~pSanig~dg~~~~fEa~HGSapd~~~~~iaGk~t~ANPiA~IlA~ammL~ 410 (483)
T PLN03065 331 EGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLE 410 (483)
T ss_pred CCCcEEEeeccchhhhhHHHHHhcCchhhcccceeCCCCceEEEecCcCcCccccchhccCCCCCcChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998745799999999999999999999977999999999999999
Q ss_pred HhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhhhhccccccCHHHHHHHHHHHhhh
Q 010485 419 HRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQFYYLFLLISKISINKYL 486 (509)
Q Consensus 419 hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~~~~~~~~~T~ef~~~Ii~~~~~ 486 (509)
|+|++|+ |++|.++|++||+||.++++ +|.+|+|||....|.+ ..+.+.++|+||+|+|+++|..
T Consensus 411 hlg~ld~-~~~l~~~A~~Le~Av~~tie-~G~~T~DLg~~~~G~~-~~~~~~~~T~ef~daV~~~L~~ 475 (483)
T PLN03065 411 HRAKLDK-NEELLDFVHKLESACIETVE-SGKMTKDLAILIHGPK-VSREFYLNTEEFIDAVAQTLAT 475 (483)
T ss_pred HhCCCCc-cchHHHHHHHHHHHHHHHHH-cCCcccccccccCCCc-ccCCCCcCHHHHHHHHHHHHHH
Confidence 9999998 89999999999999999999 9999999972211100 0012347999999999999964
No 2
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=3e-108 Score=856.75 Aligned_cols=399 Identities=65% Similarity=1.069 Sum_probs=369.9
Q ss_pred cceeccccEEEEcCCCcHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcc
Q 010485 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (509)
Q Consensus 80 ~ki~~~~~I~vLpGDGIGpEI~~~~~~~l~~~~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~ 159 (509)
.||+|++|+++|.||+|.+.+|+.++++|+.++++|+|+++++|.+++++||+++|++++++||++||+||||++||..+
T Consensus 4 ~~~~~~~~~v~~~~~em~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~~v~LkGa~~TP~~~ 83 (413)
T PTZ00435 4 GKIKVKNPVVELDGDEMTRIIWKMIKEKLILPYLDVPIKYYDLSIENRDKTDDKVTVDAAEAIKKHKVGIKCATITPDEA 83 (413)
T ss_pred ccccccCCeEEecccHHHHHHHHHHHHhhccCCCCceEEEEeCcHHHHHhcCCcCCHHHHHHHHHcCEEEECcccCCccc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hhhhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCCCCCCCCEEEEecccCccccccceeecCCCceeeeecCCCC
Q 010485 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (509)
Q Consensus 160 ~~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~~~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~g 239 (509)
++++++|+++|+|||++||+.||||+|+|||.++++|++.++|+.||+++||||||.|.++|+.+.+++..|..|.+.+|
T Consensus 84 ~~~~~~l~~~~~S~n~~LR~~ldlyanvRPi~~k~i~~~~pg~~~~i~i~Ren~e~~y~~id~vi~rent~e~~y~~~~g 163 (413)
T PTZ00435 84 RVKEFNLKKMWKSPNGTIRNILDGTVFREPIIIKNIPRLVPGWKKPIVIGRHAFGDQYKATDFVVDGPGKLELVFTPADG 163 (413)
T ss_pred cccccccccccCCchHHHHHHcCCeEEEeeeeccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCEEEEEEecCCC
Confidence 66689999999999999999999999999987899999999999999999999999999999999888887888999877
Q ss_pred CCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchhHHHHHHHHHHHhhhhccCCC
Q 010485 240 TGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319 (509)
Q Consensus 240 ~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~~P 319 (509)
.++..+++++|..+++++.++|||++||||+|+||+||++|+++||+|||+||||.+||+|+++|+|||+++|.++|..+
T Consensus 164 ~~~~~~~~~~~~~~~v~~~~~~Tr~~~eRIar~AF~~A~~r~~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYpe~~~~~ 243 (413)
T PTZ00435 164 SEPQRVDVFDFKGGGVAMGMYNTDESIEGFARSCFQYALDRKMPLYLSTKNTILKKYDGRFKDIFQEIYDEEYKAKFEKA 243 (413)
T ss_pred CcceeeeeeccCCCCeeEEEEeCHHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhHHHHHHHHHHHHHHhCccccccC
Confidence 77777889899988888888999999999999999999999989999999999999999999999999976896667666
Q ss_pred CeeEeeehHHHHHHHHhhCCCccEEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCCcccccccC
Q 010485 320 SIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKG 399 (509)
Q Consensus 320 dI~~e~~lVDa~amqlVk~P~~FVIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd~~~~~IAG 399 (509)
+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|+|+++.+++|||+||||||+|++||||
T Consensus 244 ~I~~~~~lVDa~~m~lv~~P~~fViV~~NlfGDIlSDlaA~l~GglGlapSanig~d~~~a~FEp~HGSApdi~~~~iaG 323 (413)
T PTZ00435 244 GLWYEHRLIDDMVAQAIKSEGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTRHYRQHQKG 323 (413)
T ss_pred CEEEEEeeHHHHHHHHhhCCCCeEEEeecccchhhhHHHHHhcCcccccccceeCCCCCeEEEEcCcCCccccchhhhcC
Confidence 99999999999999999999999999999999999999999999999999999998752399999999999999999999
Q ss_pred C-CCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccc----cCcchhhhhccccccCHH
Q 010485 400 Q-ETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDAL----LSYSWLILLIDRQFYYLF 474 (509)
Q Consensus 400 k-~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLg----g~~~~~~~~~~~~~~~T~ 474 (509)
| ++ |||+|+|||++|||+|||+++. ++.+.++|++|++||.++++ +|.+|+||| |+.. ..+.+.++|+
T Consensus 324 k~~~-ANP~A~Ils~ammL~~lg~~~~-~~~~~~~A~~ie~Av~~~i~-~g~~T~Dlg~~~~G~~~----~~~~~~~~T~ 396 (413)
T PTZ00435 324 KETS-TNSIASIFAWTRGLAHRAKLDN-NQELVKFCQALERSCIETIE-AGFMTKDLAICVHGSSK----VTRSDYLNTE 396 (413)
T ss_pred CCCc-cChHHHHHHHHHHHHHhCcccc-cchHHHHHHHHHHHHHHHHH-cCCCccccccccCCCcc----ccCCCCcCHH
Confidence 7 66 9999999999999999998876 77889999999999999999 899999997 5300 0012237999
Q ss_pred HHHHHHHHHhh
Q 010485 475 LLISKISINKY 485 (509)
Q Consensus 475 ef~~~Ii~~~~ 485 (509)
||+++|+++|.
T Consensus 397 e~~daV~~~L~ 407 (413)
T PTZ00435 397 EFIDKVAEKLK 407 (413)
T ss_pred HHHHHHHHHHH
Confidence 99999999994
No 3
>PRK08299 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=4.9e-108 Score=853.57 Aligned_cols=399 Identities=64% Similarity=1.052 Sum_probs=345.5
Q ss_pred cceeccccEEEEcCCCcHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcc
Q 010485 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (509)
Q Consensus 80 ~ki~~~~~I~vLpGDGIGpEI~~~~~~~l~~~~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~ 159 (509)
.||||.+||++|||||||||||++++.++++++++|+|+++++|.++++++|+++|++++++||++|++||||++||..+
T Consensus 2 ~~~~~~~~~~~~~gd~i~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~~G~~lp~~tl~~ik~~da~LkGav~tp~~~ 81 (402)
T PRK08299 2 AKIKVKNPVVELDGDEMTRIIWKFIKDKLILPYLDIDLEYYDLGIENRDATDDQVTIDAANAIKKYGVGVKCATITPDEA 81 (402)
T ss_pred CccccCCceEEecCCCchHHHHHHHHHHHhccCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCCCcc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred hhhhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCCCCCCCCEEEEecccCccccccceeecCCCceeeeecCCCC
Q 010485 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (509)
Q Consensus 160 ~~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~~~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~g 239 (509)
++.+.++++.|+|+|++|||.||||+|+||+++++++++.+++..||+||||||||+|+|+++...+.+.....|...+|
T Consensus 82 ~~~~~~~~~~~~s~n~~LRk~ldLyaNiRPv~~k~i~~~~pg~~~~ivivREnTEg~Y~gi~~~~~r~~~~~~~~~~~~g 161 (402)
T PRK08299 82 RVKEFNLKKMWKSPNGTIRNILGGTVFREPIICKNVPRLVPGWTKPIVIGRHAYGDQYRATDFKVPGKGKLTLVFTGEDG 161 (402)
T ss_pred cccccCccccccCchHHHHHHcCCeEEEEeeecccccccCCCCCCCEEEEecccCCcccceeEEeccCccceeeeecCCC
Confidence 33334555679999999999999999999997788776666666789999999999999999887666655555554443
Q ss_pred CCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchhHHHHHHHHHHHhhhhccCCC
Q 010485 240 TGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319 (509)
Q Consensus 240 ~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~~P 319 (509)
.+....+.++.+.++....+|||++||||+|+||+||++|+++||+|||+||||.+||+|+++|+|||+++|.+.|..+
T Consensus 162 -~~~e~~~~~~~~~~~~~~~~~Tr~~~eRIa~~AF~~A~~r~~kVt~v~KaNVlk~t~glf~~~~~evA~~~yp~~~~~~ 240 (402)
T PRK08299 162 -EPIEHEVHDFPGAGVAMGMYNLDESIRDFARASFNYGLDRKYPVYLSTKNTILKAYDGRFKDIFQEVYEAEFKEKFEAA 240 (402)
T ss_pred -ccccceecccccCceeEEEeecHHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhhHHHHHHHHHHHHHhCccccccC
Confidence 1112223333334555555699999999999999999999989999999999999999999999999966893334444
Q ss_pred CeeEeeehHHHHHHHHhhCCCccEEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCCcccccccC
Q 010485 320 SIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKG 399 (509)
Q Consensus 320 dI~~e~~lVDa~amqlVk~P~~FVIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd~~~~~IAG 399 (509)
+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|+|+++.++||||+||||||||++||||
T Consensus 241 ~i~~~~~~vDa~~~~lv~~P~~fVivt~NlfGDIlSDlaa~l~GglG~apSanig~~~~~a~FEp~HGSAPD~~~~~IaG 320 (402)
T PRK08299 241 GITYEHRLIDDMVASALKWEGGYVWACKNYDGDVQSDTVAQGFGSLGLMTSVLMTPDGKTVEAEAAHGTVTRHYRQHQKG 320 (402)
T ss_pred cEEEEEeeHHHHHHHHHhCcCCcEEEEeccccchhhhHHHhhcCCcccccceeeCCCCCcEEEecCCCCCcccccccccC
Confidence 79999999999999999999999999999999999999999999999999999998752389999999999999999999
Q ss_pred CCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhhhhccccccCHHHHHHH
Q 010485 400 QETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQFYYLFLLISK 479 (509)
Q Consensus 400 k~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~~~~~~~~~T~ef~~~ 479 (509)
||++|||+|||||++|||+|||+++. ++.+.++|++|++||.++++ +|.+|+|||+.. |+ +...++|+||+|+
T Consensus 321 k~~~ANP~A~IlS~amML~~LG~~~~-~~~l~~~a~~I~~Av~~~l~-~g~~T~Dlg~~~-g~----~~g~~tT~e~~da 393 (402)
T PRK08299 321 EETSTNPIASIFAWTRGLAHRGKLDG-NPELVKFADTLEKVCIETVE-SGFMTKDLALLV-GP----DQKWLTTEEFLDA 393 (402)
T ss_pred CCCccCHHHHHHHHHHHHHHhCCccc-cchHHHHHHHHHHHHHHHHH-cCCcCccchhcc-CC----CCCCcCHHHHHHH
Confidence 99449999999999999999999886 78889999999999999999 899999996210 00 0112699999999
Q ss_pred HHHHhhh
Q 010485 480 ISINKYL 486 (509)
Q Consensus 480 Ii~~~~~ 486 (509)
|+++|.+
T Consensus 394 Ii~~l~~ 400 (402)
T PRK08299 394 IDENLEK 400 (402)
T ss_pred HHHHHHh
Confidence 9999853
No 4
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-108 Score=835.25 Aligned_cols=338 Identities=18% Similarity=0.131 Sum_probs=305.0
Q ss_pred ccccEEEEcCCCcHHHHHHHHHHHHhcC---CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcch
Q 010485 84 VQNPIVEMDGDEMTRIIWQMIKDKLIFP---YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (509)
Q Consensus 84 ~~~~I~vLpGDGIGpEI~~~~~~~l~~~---~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~~ 160 (509)
|.++|++|||||||||||++++++|.+. +++|+|+++++|++++++||.++|++|++.|+++|++||||+++|.+..
T Consensus 2 ~~~~IavipGDGIGpEv~~~a~kVl~a~~~~~~~~e~~~~~~G~~~~~~~G~~lpeetl~~~~~~DaiL~Gavg~P~~~~ 81 (348)
T COG0473 2 KTYTIAVIPGDGIGPEVMAAALKVLEAAAEFGLDFEFEEAEVGGEAYDKHGEPLPEETLESLKKADAILFGAVGGPKWDP 81 (348)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCceEEEEehhhHHHHHHcCCCCCHHHHHHHHhCCEEEEcccCCCCCCC
Confidence 4578999999999999999999888544 4899999999999999999999999999999999999999999996532
Q ss_pred hhhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCCCCC--CCCEEEEecccCccccccceeecCCCceeeeecCCC
Q 010485 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW--KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED 238 (509)
Q Consensus 161 ~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~~--~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~ 238 (509)
. ..+++|++++|||+||||||+||+ +.+|++++.. +.|||||||||||+|+|.++....++ |
T Consensus 82 ~-----~~~~~~~ll~lRk~l~lyANlRP~--k~~~~~k~~~~~~~D~viVREnTeG~Y~G~~~~~~~~~--e------- 145 (348)
T COG0473 82 L-----PRPERGLLLALRKELDLYANLRPA--KSLPGLKSPLVKGVDIVIVRENTEGLYFGEEGRILGGG--E------- 145 (348)
T ss_pred C-----CCcccchHHHHHHhcCceeeeeec--ccCCCCCCccCCCccEEEEeeCCCccccCCCccccCCC--e-------
Confidence 1 245688999999999999999998 6888887654 57999999999999999876321111 0
Q ss_pred CCCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhC-CCCEEEEeCCccccccchhHHHHHHHHHHHhhhhccC
Q 010485 239 GTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFE 317 (509)
Q Consensus 239 g~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~r-kk~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~ 317 (509)
-+.++++|||+++|||+|+|||+|++| +++||+|||+|||+.++++|+++|+||+ ++|
T Consensus 146 ---------------va~~~~~~Tr~~~eRI~r~AFe~A~~R~~kkvTsv~KaNVl~~s~~lwrev~~eva-~~y----- 204 (348)
T COG0473 146 ---------------VAIDTKVITRKGSERIARFAFELARKRGRKKVTSVHKANVLKLSDGLWREVVEEVA-KEY----- 204 (348)
T ss_pred ---------------EEEEEEeccHHHHHHHHHHHHHHHHhhCCCceEEEehhhhhhhhhHHHHHHHHHHh-hcC-----
Confidence 123778899999999999999999999 6999999999999999999999999999 599
Q ss_pred CCCeeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCCccccc
Q 010485 318 EHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLH 396 (509)
Q Consensus 318 ~PdI~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd~~~~~ 396 (509)
|||+++|+|||+++||||++|++| ||||+|||||||||+||+|+|||||+||||+|++...+||||+||||||
T Consensus 205 -Pdv~~~~~~VD~aam~lV~~P~~FDViVt~NlFGDILSD~aa~l~GslGl~PSAnig~~~~~~lfEPvHGSAPD----- 278 (348)
T COG0473 205 -PDVELDHMYVDAAAMQLVRNPEQFDVIVTSNLFGDILSDEAAALTGSLGLAPSANLGDERGPALFEPVHGSAPD----- 278 (348)
T ss_pred -CCcchhHHhHHHHHHHHhhCccccCEEEEccchhHHHHhHHHHhcCccccCccCccCCCCCCceeecCCCCccc-----
Confidence 999999999999999999999999 9999999999999999999999999999999984226999999999999
Q ss_pred ccCCCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhhhhccccccCHHHH
Q 010485 397 QKGQETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQFYYLFLL 476 (509)
Q Consensus 397 IAGk~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~~~~~~~~~T~ef 476 (509)
|||||| |||+|+|||++|||+|+|+.+ +|++|++||.++|++.|++|+||||+ .+|+||
T Consensus 279 IAGkgi-ANPiA~IlS~aMML~~~g~~~--------~A~~Ie~Av~~vl~~~g~~T~Dlgg~------------~~T~e~ 337 (348)
T COG0473 279 IAGKGI-ANPIATILSAAMMLRHLGEKE--------AADAIENAVEKVLAEGGIRTPDLGGN------------ATTSEV 337 (348)
T ss_pred ccCCCc-cChHHHHHHHHHHHHHhCCch--------HHHHHHHHHHHHHHcCCCCCcccCCC------------ccHHHH
Confidence 999999 999999999999999999643 69999999999998446999999998 379999
Q ss_pred HHHHHHHhh
Q 010485 477 ISKISINKY 485 (509)
Q Consensus 477 ~~~Ii~~~~ 485 (509)
+++|++.|.
T Consensus 338 ~d~I~~~l~ 346 (348)
T COG0473 338 GDAIAKALA 346 (348)
T ss_pred HHHHHHHHh
Confidence 999999886
No 5
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=100.00 E-value=4.2e-107 Score=847.28 Aligned_cols=398 Identities=66% Similarity=1.082 Sum_probs=364.0
Q ss_pred cceeccccEEEEcCCCcHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcc
Q 010485 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (509)
Q Consensus 80 ~ki~~~~~I~vLpGDGIGpEI~~~~~~~l~~~~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~ 159 (509)
+||||.+|+++|.||+|.+.+|+.++++|+.++++|+|+++|+|.+++++||+++|++++++|+++|++||||++||.+.
T Consensus 1 ~~~~~~~p~v~~~g~em~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~dv~LkGa~~TP~~~ 80 (409)
T TIGR00127 1 SKIKVANPVVEMDGDEMTRIIWELIKDKLILPYVELDLKYYDLGVEYRDATNDQVTVDAAEAIKKYNVGVKCATITPDEA 80 (409)
T ss_pred CCccccCCeEEecCcHHHHHHHHHHHHhhccCCcCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hhhhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCCCCCCCCEEEEecccCccccccceeecCCCceeeeecCCCC
Q 010485 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (509)
Q Consensus 160 ~~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~~~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~g 239 (509)
++.++.|+++|+|||++||+.||||||+|||.++++++..++|..||+|+||||||.|.++|+.+.++++.|..|.+.++
T Consensus 81 ~~~~~~l~k~~~S~n~~lR~~ldlyanvRPi~~~~~~~~~pg~~~~i~i~R~~~~~~y~~iD~vivREnt~Eg~Y~g~e~ 160 (409)
T TIGR00127 81 RVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWEKPIIIGRHAFGDQYRATDFVVPGPGKLELVYKPKDG 160 (409)
T ss_pred cccccccccccCCccHHHHHHcCCeEEeeeccccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCeeeEEEECCCC
Confidence 66788899999999999999999999999988899998889999999999999999999999999999998999998876
Q ss_pred CCceeeeeeccC-CCceeeeeccChHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchhHHHHHHHHHHHhhhhccCC
Q 010485 240 TGPVELDVYNFK-GPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEE 318 (509)
Q Consensus 240 ~~~~~~~v~~~~-~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~~ 318 (509)
..+....+..+. +++++..++|||++||||+|+||+||++|+++||+|||+||||.+||+|+++|+||++++|.++|..
T Consensus 161 ~~~~~~~~~~~~~~~~v~~~~~~T~~~~eRIar~AF~~A~~~~~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYp~~~~~ 240 (409)
T TIGR00127 161 TQKVTLKVYDFEEGGGVAMAMYNTDESIEGFAHSSFQLALEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFEA 240 (409)
T ss_pred CcccceeeeeccCCCCeEEEEEECHHHHHHHHHHHHHHHHHcCCCEEEEcCcchhhhhhHHHHHHHHHHHHHhCcccccC
Confidence 443333334444 4567777789999999999999999999999999999999999999999999999985599888888
Q ss_pred CCeeEeeehHHHHHHHHhhCCCccEEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCCccccccc
Q 010485 319 HSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQK 398 (509)
Q Consensus 319 PdI~~e~~lVDa~amqlVk~P~~FVIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd~~~~~IA 398 (509)
|+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|+|+++...+|||+||||||+|++|||
T Consensus 241 ~~I~~~~~lVDa~~m~lv~~P~~fViv~~NlfGDIlSDlaA~l~GslGl~pSanig~~~~~~~fEp~HGSApdi~~~~ia 320 (409)
T TIGR00127 241 LGIWYEHRLIDDMVAQALKSEGGFIWACKNYDGDVQSDIVAQGFGSLGLMTSVLICPDGKTFEAEAAHGTVTRHYRMYQK 320 (409)
T ss_pred CCEEEEEeeHHHHHHHHhhCCCCcEEEecccchHHHHHHHHHhcCchhhhheeeeCCCCceEEeccccCCCcccchhhhC
Confidence 89999999999999999999999999999999999999999999999999999999886346889999999999999999
Q ss_pred CC-CCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCccc----ccCcchhhhhccccccCH
Q 010485 399 GQ-ETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDA----LLSYSWLILLIDRQFYYL 473 (509)
Q Consensus 399 Gk-~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DL----gg~~~~~~~~~~~~~~~T 473 (509)
|| ++ |||+|+|||++|||+|+|+++. |+.+.++|++|++||.++++ +|++|+|| ||+... +.+.++|
T Consensus 321 Gk~~~-ANP~A~IlS~ammL~~lg~~~~-~~g~~~~A~~Ie~Av~~~i~-~g~~T~Dl~~~~GG~~~~-----~~~~~~T 392 (409)
T TIGR00127 321 GQETS-TNSIASIFAWSRGLAHRAKLDN-NPELSKFANILESACINTVE-AGIMTKDLALILGGSPVE-----RSAYLNT 392 (409)
T ss_pred CCCCc-cChHHHHHHHHHHHHHhhhcCC-cccHHHHHHHHHHHHHHHHh-cCCcccccccccCCCccc-----CCCCcCH
Confidence 97 66 9999999999999999997765 67788999999999999999 89999999 664111 1234799
Q ss_pred HHHHHHHHHHhh
Q 010485 474 FLLISKISINKY 485 (509)
Q Consensus 474 ~ef~~~Ii~~~~ 485 (509)
+||+++|+++|.
T Consensus 393 ~e~~daV~~~L~ 404 (409)
T TIGR00127 393 EEFIDAVEERLK 404 (409)
T ss_pred HHHHHHHHHHHH
Confidence 999999999993
No 6
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=1.3e-106 Score=835.53 Aligned_cols=379 Identities=29% Similarity=0.386 Sum_probs=356.6
Q ss_pred EEEcCCCcHHHHHHHHHHHHhcCCCCeE-EEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchhhhhccc
Q 010485 89 VEMDGDEMTRIIWQMIKDKLIFPYLDLD-IKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLK 167 (509)
Q Consensus 89 ~vLpGDGIGpEI~~~~~~~l~~~~~~i~-~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~~~~e~~L~ 167 (509)
|.|+||+|++.+|+.++++|+.++++++ |+|||+|.++||+|+++++-|++++++++.|++|||++||+++|++||+|+
T Consensus 2 v~~~gdemtr~~~~~i~~~li~p~~d~~~~~y~DL~~~~Rd~T~dqvt~daa~a~~~~~vgvKcatiTp~~~rv~e~~lk 81 (393)
T PLN00096 2 VYVAGEEMTRYTMDLILAKWIEPHVDTSAWEFFDLRAKNRDDTEDQVLRDVIEAGARLKAIFKEPTITPTADQVKRLGLK 81 (393)
T ss_pred eeecchHHHHHHHHHHHHhhccceeccccceeeccCCccccccCCcchHHHHHHHHHhCeeeeecccCCCHHHHHhhchh
Confidence 7899999999999999999999999996 999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCchhHhhhcCc-eEEeeccccCCCCCCCCCCCCCEEEEecccCccccccceeecCCCceeeeecCCCCCCceeee
Q 010485 168 SMWRSPNGTIRNILNG-TVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELD 246 (509)
Q Consensus 168 ~~~~S~n~~LRk~LdL-yanvRPi~~k~lp~l~~~~~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~g~~~~~~~ 246 (509)
++|+|||++||+.||+ +++++||.|+++| ++|+.||+|.||..+|+|.. ++.+.++|++++.|+|++|+++..+.
T Consensus 82 ~~w~sPNgtiR~~l~G~tvfR~pi~~~~i~---~~w~kpi~i~Rha~gd~y~a-~~~~~~~g~~~~~~~~~~g~~~~~~~ 157 (393)
T PLN00096 82 KAWGSPNGAMRRGWNGITISRDTIHIDGVE---LGYKKPVFFERHAVGGEYSA-GYKIVGKGTLVTTFVPEEGGKPIVVD 157 (393)
T ss_pred hhcCCCcHHHHhhcCCceEeeCCEecCCCC---CCccCceEEEeeccCCcccc-ceEecCCcEEEEEEEeCCCCCceEEE
Confidence 9999999999999999 9999999888875 78999999999999999999 99999999999999999998888899
Q ss_pred eeccC-CCceeeeeccChHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchhHHHHHHHHHHHhhhhccCC-----CC
Q 010485 247 VYNFK-GPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEE-----HS 320 (509)
Q Consensus 247 v~~~~-~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~~-----Pd 320 (509)
+++|+ +.|+++.||||.++|+||||+||+||++|+++||+|||+||||+++|+|+ +|+||++++|+++|++ |+
T Consensus 158 ~~~f~~~~gv~~~~~N~~~si~RiAr~AF~~A~~r~~~Vt~v~KaNILK~tdg~f~-if~eVa~~eyk~~f~~~~~~~p~ 236 (393)
T PLN00096 158 DRTITDDLNAVVTYHNPLDNVHHLARIFFGRCLDAGIVPYVVTKKTVFKWQEPFWE-IMKKVFDEEFKSKFVDKGVMKSG 236 (393)
T ss_pred EEecCCCCeEEEEeccCHHHHHHHHHHHHHHHHHhCCcEEEEeCccccccchHHHH-HHHHHHHHHHhhhhhhcccCCCc
Confidence 99999 68999999999999999999999999999999999999999999999886 9999996699999998 89
Q ss_pred eeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCC--CC-ceeeecCCcccCCccccc
Q 010485 321 IWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSD--GK-TLEAEAAHGTVTRHFRLH 396 (509)
Q Consensus 321 I~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d--~~-~a~FEp~HGSAPd~~~~~ 396 (509)
|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|+|++ +. +++|||+|||||||+++|
T Consensus 237 V~~e~~lIDa~~~qlVk~P~~fdViv~~NlfGDIlSDlaA~l~GsLGl~pSanig~d~dg~~~a~fEp~HGSApdiag~~ 316 (393)
T PLN00096 237 DELVHLLSDAATMKLVVWTDGGFGMAAHNYDGDVLTDELAQVHKSPGFITSNLVGVDENGTLIKEFEASHGTVTDMDEAR 316 (393)
T ss_pred eEEEeeeHHHHHHHHHhCcccCCEEEECcccchHHHHHHHHhcCCcccccccccCCccCCccceEEEcCCCChHHhhhhh
Confidence 9999999999999999999999 9999999999999999999999999999999954 52 389999999999999999
Q ss_pred ccCCC-CCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhhhhccccccCHHH
Q 010485 397 QKGQE-TSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQFYYLFL 475 (509)
Q Consensus 397 IAGk~-i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~~~~~~~~~T~e 475 (509)
++||+ + |||+|+||||+|||+|++++++..++|.++|++||+||.++++ +|.+|+||+|. + .++|+|
T Consensus 317 ~~Gk~~~-ANPiA~IlA~a~mL~~~~~l~g~~~~l~~~A~~Ie~Av~~tie-~G~~T~DL~g~--~--------~~tT~e 384 (393)
T PLN00096 317 LRGEETS-LNPLGMVEGLIGAMNHAADVHGGKERVHPFTAKLRAVIHKLFR-EGRGTRDLCGA--G--------GLTTEQ 384 (393)
T ss_pred hcCCCCc-cChHHHHHHHHHHHHhhcccCCCchhhHHHHHHHHHHHHHHHh-cCCcCcCCCCC--C--------CCCHHH
Confidence 99996 7 9999999999999999976555223678899999999999999 99999999763 1 169999
Q ss_pred HHHHHHHHh
Q 010485 476 LISKISINK 484 (509)
Q Consensus 476 f~~~Ii~~~ 484 (509)
|+++|+++|
T Consensus 385 f~daI~~~L 393 (393)
T PLN00096 385 FIDAVAEEL 393 (393)
T ss_pred HHHHHHHhC
Confidence 999999875
No 7
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=9e-104 Score=816.26 Aligned_cols=329 Identities=22% Similarity=0.181 Sum_probs=301.0
Q ss_pred ccccEEEEcCCCcHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchhhh
Q 010485 84 VQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKE 163 (509)
Q Consensus 84 ~~~~I~vLpGDGIGpEI~~~~~~~l~~~~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~~~~e 163 (509)
.+++|++||||||||||++++++++.+.+++|+|+++++|.+++++||+++|++++++|+++|++||||+++|..
T Consensus 40 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~G~i~~p~~----- 114 (372)
T PLN00118 40 TPITATLFPGDGIGPEIAESVKQVFTAAGVPIEWEEHYVGTTVDPRTGSFLTWESLESVRRNKVGLKGPMATPIG----- 114 (372)
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcHHHHHhcCCcCCHHHHHHHHHCCEEEECCccCCcc-----
Confidence 346899999999999999999999977789999999999999999999999999999999999999999999942
Q ss_pred hcccccCCCCchhHhhhcCceEEeeccccCCCCCCCCCC-CCCEEEEecccCccccccceeecCCCceeeeecCCCCCCc
Q 010485 164 FGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGP 242 (509)
Q Consensus 164 ~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~~-~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~g~~~ 242 (509)
.+++|+|++|||+||||+|+||+ +.+|++...+ ++|||||||||||+|+|.+++.. +|+
T Consensus 115 ----~~~~s~~~~LRk~ldLyaNvRPv--r~~pg~~~~~~~iD~vIVREnteG~Y~g~~~~~~-~gv------------- 174 (372)
T PLN00118 115 ----KGHRSLNLTLRKELGLYANVRPC--YSLPGYKTRYDDVDLVTIRENTEGEYSGLEHQVV-RGV------------- 174 (372)
T ss_pred ----ccccCchHHHHHHcCCeeeeccc--ccCCCccCcccCceEEEEEecCCCcccceeeecc-CCe-------------
Confidence 24689999999999999999998 5677765543 67999999999999999876431 221
Q ss_pred eeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchhHHHHHHHHHHHhhhhccCCCCe
Q 010485 243 VELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSI 321 (509)
Q Consensus 243 ~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rk-k~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~~PdI 321 (509)
+.++.+|||+++|||+|+||+||++|+ |+||+|||+||||.+||+|+++|+||++ +| |+|
T Consensus 175 ------------~~~~~v~Tr~~~eRIar~AF~~A~~r~~k~Vt~v~KaNvlk~tdglf~e~~~eva~-ey------PdI 235 (372)
T PLN00118 175 ------------VESLKIITRQASLRVAEYAFHYAKTHGRKRVSAIHKANIMKKTDGLFLKCCREVAE-KY------PEI 235 (372)
T ss_pred ------------EEEEEecCHHHHHHHHHHHHHHHHHcCCCeEEEEECCccchhhhHHHHHHHHHHHh-hC------CCc
Confidence 114566899999999999999999996 5699999999999999999999999987 89 999
Q ss_pred eEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCCcccccccCC
Q 010485 322 WYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQ 400 (509)
Q Consensus 322 ~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd~~~~~IAGk 400 (509)
+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|+|+++ .+||||+|||||| ||||
T Consensus 236 ~~~~~~VDa~a~~Lv~~P~~fDViVt~NLfGDILSDlaa~l~GglGlapSanig~~~-~a~FEpvHGSAPd-----IAGk 309 (372)
T PLN00118 236 VYEEVIIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGENG-LALAEAVHGSAPD-----IAGK 309 (372)
T ss_pred eEEeeeHHHHHHHhccCcccCcEEEEcCcccchhhHHHHHhcCCcccCcceeecCCC-CeEEECCCCChhh-----hCCC
Confidence 999999999999999999999 99999999999999999999999999999999876 6999999999999 9999
Q ss_pred CCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCC-CcCcccccCcchhhhhccccccCHHHHHHH
Q 010485 401 ETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSI-SLLNDALLSYSWLILLIDRQFYYLFLLISK 479 (509)
Q Consensus 401 ~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G-~~T~DLgg~~~~~~~~~~~~~~~T~ef~~~ 479 (509)
|+ |||+|+|||++|||+|||+ .++|++|++||.++|+ +| ++|+||||+ ++|+||+|+
T Consensus 310 ~i-ANP~A~IlS~amML~~lG~--------~~~A~~I~~Av~~~l~-~G~~~T~DlGG~------------~sT~e~~da 367 (372)
T PLN00118 310 NL-ANPTALLLSAVMMLRHLKL--------NEQAEQIHNAILNTIA-EGKYRTADLGGS------------STTTDFTKA 367 (372)
T ss_pred CC-cCcHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHHHH-cCCccCcccCCC------------cCHHHHHHH
Confidence 99 9999999999999999996 4469999999999999 88 799999997 599999999
Q ss_pred HHHHh
Q 010485 480 ISINK 484 (509)
Q Consensus 480 Ii~~~ 484 (509)
|+++|
T Consensus 368 v~~~l 372 (372)
T PLN00118 368 ICDHL 372 (372)
T ss_pred HHhhC
Confidence 99875
No 8
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-103 Score=807.43 Aligned_cols=330 Identities=18% Similarity=0.163 Sum_probs=299.5
Q ss_pred ccccEEEEcCCCcHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchhhh
Q 010485 84 VQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKE 163 (509)
Q Consensus 84 ~~~~I~vLpGDGIGpEI~~~~~~~l~~~~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~~~~e 163 (509)
|+++|++|||||||||||+++++++.+.+++|+|+++++|.++++++|+++|++++++|+++|++||||+++|.+
T Consensus 1 ~~~~I~vipGDGIGpEV~~~a~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~Gavg~p~~----- 75 (334)
T PRK08997 1 MKQTITVIPGDGIGPSIIDATLKILDKLGCDFEYEFADAGLTALEKHGELLPQRTLDLIEKNKIALKGPLTTPVG----- 75 (334)
T ss_pred CCcEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCHHHHHHHHHCCEEEECcccCCCC-----
Confidence 567899999999999999999999876688999999999999999999999999999999999999999999953
Q ss_pred hcccccCCCCchhHhhhcCceEEeeccccCCCCCCCCCC-CCCEEEEecccCccccccceeecCCCceeeeecCCCCCCc
Q 010485 164 FGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGP 242 (509)
Q Consensus 164 ~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~~-~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~g~~~ 242 (509)
.+++|+|+.|||+||||+|+||+ |.+|++.+.+ ++|++||||||||+|+|.++.....+.
T Consensus 76 ----~~~~~~~~~LR~~ldlyanvRP~--k~~~g~~~~~~~iD~vivREnteG~Y~g~~~~~~~~~~------------- 136 (334)
T PRK08997 76 ----EGFTSINVTLRKKFDLYANVRPV--LSFPGTKARYDNIDIITVRENTEGMYSGEGQTVSEDGE------------- 136 (334)
T ss_pred ----cCccchHHHHHHHcCCeEEEeec--ccCCCCCCccCCcCEEEEEeccCceecCccceecCCCc-------------
Confidence 23578899999999999999998 5677765543 679999999999999998653210010
Q ss_pred eeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchhHHHHHHHHHHHhhhhccCCCCe
Q 010485 243 VELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSI 321 (509)
Q Consensus 243 ~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rk-k~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~~PdI 321 (509)
.+.++++|||+++|||+|+||+||++|+ ++||+|||+||||.++|+|+++|+||++ +| |+|
T Consensus 137 -----------~a~~~~~~Tr~~~eRi~r~Af~~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~-~y------P~V 198 (334)
T PRK08997 137 -----------TAEATSIITRKGAERIVRFAYELARKEGRKKVTAVHKANIMKSTSGLFLKVAREVAL-RY------PDI 198 (334)
T ss_pred -----------eEEEEEEeeHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCcchhhhHHHHHHHHHHHh-hC------CCe
Confidence 1225677899999999999999999996 5799999999999999999999999987 89 999
Q ss_pred eEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCCcccccccCC
Q 010485 322 WYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQ 400 (509)
Q Consensus 322 ~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd~~~~~IAGk 400 (509)
+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|+|++ .+||||+|||||| ||||
T Consensus 199 ~~~~~~vDa~~~~lv~~P~~fdVivt~NlfGDILSDlaa~l~GglGl~psanig~~--~a~FEp~HGSAPd-----IAGk 271 (334)
T PRK08997 199 EFEEMIVDATCMQLVMNPEQFDVIVTTNLFGDILSDLCAGLVGGLGMAPGANIGRD--AAIFEAVHGSAPD-----IAGK 271 (334)
T ss_pred EEEeeeHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCCCCcCcceeECCC--ceEEECCCCchhh-----hCCC
Confidence 999999999999999999999 9999999999999999999999999999999976 4999999999999 9999
Q ss_pred CCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCC-CcCcccccCcchhhhhccccccCHHHHHHH
Q 010485 401 ETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSI-SLLNDALLSYSWLILLIDRQFYYLFLLISK 479 (509)
Q Consensus 401 ~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G-~~T~DLgg~~~~~~~~~~~~~~~T~ef~~~ 479 (509)
|+ |||+|+|||++|||+|||+. ++|++|++||.++++ +| .+|+||||+ ++|+||+++
T Consensus 272 ~i-ANP~a~IlS~amML~~lG~~--------~~A~~i~~AV~~vl~-~G~~~T~DlGG~------------a~T~e~~~a 329 (334)
T PRK08997 272 NL-ANPTSVILAAIQMLEYLGMP--------DKAERIRKAIVAVIE-AGDRTTRDLGGT------------HGTTDFTQA 329 (334)
T ss_pred Cc-cCcHHHHHHHHHHHHHcCCh--------hHHHHHHHHHHHHHH-cCCccCcccCCC------------cCHHHHHHH
Confidence 99 99999999999999999974 469999999999999 88 479999987 599999999
Q ss_pred HHHHh
Q 010485 480 ISINK 484 (509)
Q Consensus 480 Ii~~~ 484 (509)
|+++|
T Consensus 330 v~~~l 334 (334)
T PRK08997 330 VIDRL 334 (334)
T ss_pred HHhhC
Confidence 99875
No 9
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=100.00 E-value=3.8e-102 Score=795.09 Aligned_cols=322 Identities=19% Similarity=0.149 Sum_probs=295.2
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchhhhhc
Q 010485 86 NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (509)
Q Consensus 86 ~~I~vLpGDGIGpEI~~~~~~~l~~~~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~~~~e~~ 165 (509)
++|++||||||||||++++++++.+.+++|+|+++++|.++++++|+++|++++++|+++|++||||+++|.
T Consensus 2 ~~I~vipGDGIGpEv~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~G~vg~p~-------- 73 (330)
T PRK14025 2 HKICVIEGDGIGKEVVPAALHVLEATGLPFEFVYAEAGDEVFEKTGKALPEETIEAAKEADAVLFGAAGETA-------- 73 (330)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHhcCCcEEEEEEcCCHHHHHHhCCCCCHHHHHHHHHCCEEEEccCCCCc--------
Confidence 479999999999999999999997778999999999999999999999999999999999999999999883
Q ss_pred ccccCCCCchhHhhhcCceEEeeccccCCCCCCCCCC-CCCEEEEecccCccccccceeecCCCceeeeecCCCCCCcee
Q 010485 166 LKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVE 244 (509)
Q Consensus 166 L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~~-~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~g~~~~~ 244 (509)
.|+|+.|||+||||+|+||+ +.+|++...+ ++|+|||||||||+|+|.++... +++
T Consensus 74 -----~~~~~~LR~~ldlyanvRP~--r~~pg~~~~~~~iD~vivREnteG~Y~g~~~~~~-~~~--------------- 130 (330)
T PRK14025 74 -----ADVIVKLRRILDTYANVRPV--KSYKGVKCLYPDIDYVIVRENTEGLYKGIEAEIA-DGV--------------- 130 (330)
T ss_pred -----cchHHHHHHHcCCeEEEEEe--ecCCCCCCccCCcCEEEEEECCCceecCcccccC-CCc---------------
Confidence 35689999999999999998 5677765543 68999999999999999876421 111
Q ss_pred eeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhC----C-CCEEEEeCCccccccchhHHHHHHHHHHHhhhhccCCC
Q 010485 245 LDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSK----K-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319 (509)
Q Consensus 245 ~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~r----k-k~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~~P 319 (509)
+.++.+|||+++|||+|+||+||++| + |+||+|||+||||.+||+|+++|+||++ +| |
T Consensus 131 ----------~~~~~~~Tr~~~~Ri~r~Af~~A~~r~~~~~~k~Vt~v~KaNvl~~t~glf~e~~~eva~-~y------p 193 (330)
T PRK14025 131 ----------TVATRVITRKASERIFRFAFEMAKRRKKMGKEGKVTCAHKANVLKKTDGLFKKTFYEVAK-EY------P 193 (330)
T ss_pred ----------eEEeEeccHHHHHHHHHHHHHHHHhccccCCCCeEEEEECCCchhhhhHHHHHHHHHHHh-hC------C
Confidence 11456689999999999999999999 4 5799999999999999999999999987 89 9
Q ss_pred CeeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCCccccccc
Q 010485 320 SIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQK 398 (509)
Q Consensus 320 dI~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd~~~~~IA 398 (509)
+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|+|++ .+||||+|||||| ||
T Consensus 194 ~i~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GglGl~psanig~~--~a~FEp~HGSAPd-----iA 266 (330)
T PRK14025 194 DIKAEDYYVDAMNMYIITRPQTFDVVVTSNLFGDILSDGAAGLVGGLGLAPSANIGDK--YGLFEPVHGSAPD-----IA 266 (330)
T ss_pred CeEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhcCCCCcccceeeCCC--cceeEcCCCCchh-----hC
Confidence 99999999999999999999999 9999999999999999999999999999999976 4999999999999 99
Q ss_pred CCCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhhhhccccccCHHHHHH
Q 010485 399 GQETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQFYYLFLLIS 478 (509)
Q Consensus 399 Gk~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~~~~~~~~~T~ef~~ 478 (509)
|||+ |||+|+|||++|||+|||+. ++|++|++||.++++ +|++|+||||+ ++|+||++
T Consensus 267 Gk~i-ANP~a~IlS~ammL~~lG~~--------~~A~~I~~Av~~vl~-~g~~T~DlGG~------------~~T~e~~~ 324 (330)
T PRK14025 267 GKGI-ANPTATILTAVLMLRHLGEN--------EEADKVEKALEEVLA-LGLTTPDLGGN------------LSTMEMAE 324 (330)
T ss_pred CCCC-cCcHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHHHH-cCCCCcccCCC------------cCHHHHHH
Confidence 9999 99999999999999999974 469999999999999 89999999997 59999999
Q ss_pred HHHHHh
Q 010485 479 KISINK 484 (509)
Q Consensus 479 ~Ii~~~ 484 (509)
+|++++
T Consensus 325 av~~~~ 330 (330)
T PRK14025 325 EVAKRV 330 (330)
T ss_pred HHHHhC
Confidence 999875
No 10
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=2.3e-101 Score=805.20 Aligned_cols=379 Identities=65% Similarity=1.027 Sum_probs=324.4
Q ss_pred ccceeccccEEEEcCCCcHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCc
Q 010485 79 IDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDE 158 (509)
Q Consensus 79 ~~ki~~~~~I~vLpGDGIGpEI~~~~~~~l~~~~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~ 158 (509)
+.||||..|+++|||||||+|+|+++++++.+++++|+|+++++|.+++++||+++|++++++|+++|++||||++||..
T Consensus 3 ~~~~~~~~p~~~~~Gd~~~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~tg~~lp~e~le~~k~~da~lkGav~tp~~ 82 (410)
T PLN00103 3 FEKIKVANPIVEMDGDEMTRVIWKSIKDKLIFPFLDLDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDE 82 (410)
T ss_pred cccccccCCeEEecCCcchHHHHHHHHHHHhcCCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCccc
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred chhhhhcccccCCCCchhHhhhcCceEEeeccccCCCC----CCCCC----------------------CCCCEEEEecc
Q 010485 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIP----RIVPG----------------------WKKPICIGRHA 212 (509)
Q Consensus 159 ~~~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp----~l~~~----------------------~~~DivIvREn 212 (509)
.++.|.++++.|+|+|++||+.||||+|+|||.+|++| ++..+ .+.|+||||||
T Consensus 83 ~~~~~~~~~~~~~s~n~~lRk~ldlyanvRP~~vk~~~~~~~g~~~~i~~~~~~~~~~~~~~d~v~~~~~~id~vivREN 162 (410)
T PLN00103 83 ARVKEFGLKQMWKSPNGTIRNILNGTVFREPIICKNIPRLVPGWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVFVPEG 162 (410)
T ss_pred ccccccCccccccCchHHHHHHcCCeEEecchhccccCccCCCCCCceeecccccccccccceeccCCCCceEEEEEecC
Confidence 43344556677999999999999999999996557777 43221 24578999999
Q ss_pred cCccccccceeecCCCceeeeecCCCCCCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCCCCEEEEeCCcc
Q 010485 213 FGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTI 292 (509)
Q Consensus 213 TeG~Y~g~e~~~~~~g~~e~~~~~~~g~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNV 292 (509)
|||+| ++... .|. | ..++....++|+++||||+|+||+||++|+++||+|||+||
T Consensus 163 TEg~y---e~~~~-------~~~---g------------~~~v~~~~~~T~~~~~Riar~AFe~A~~r~~~vt~v~KaNV 217 (410)
T PLN00103 163 KDEKT---ELEVY-------NFT---G------------AGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTI 217 (410)
T ss_pred CCcee---EEEee-------ccC---C------------CcceEEEEEcCHHHHHHHHHHHHHHHHhcCCcEEEECCCCC
Confidence 99999 22210 011 0 01222344469999999999999999999989999999999
Q ss_pred ccccchhHHHHHHHHHHHhhhhccCCCCeeEeeehHHHHHHHHhhCCCccEEEeCCcchhhHhhHhhhhcCCcccccccc
Q 010485 293 LKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVL 372 (509)
Q Consensus 293 lk~tdglf~~i~~eVa~~eY~~~f~~PdI~~e~~lVDa~amqlVk~P~~FVIVt~NLfGDILSDlaA~l~GsLGlapSan 372 (509)
||.+||+|+++|+||++++||++|.+|+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|
T Consensus 218 lk~~dglf~~~~~eva~~~~~~eyp~~~I~~~~~lVDa~a~~lv~~P~~fViv~~NLfGDIlSDlaA~l~GslGlapSan 297 (410)
T PLN00103 218 LKKYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVL 297 (410)
T ss_pred chhhHHHHHHHHHHHHHhhhhhhCCCCceEEEEeEHHHHHHHHhcCCCCCEEEEcccchHHHHHHHHHhcCchhhhhccc
Confidence 99999999999999998778777755599999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeeecCCcccCCccccc-ccCCCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCc
Q 010485 373 LSSDGKTLEAEAAHGTVTRHFRLH-QKGQETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISL 451 (509)
Q Consensus 373 ig~d~~~a~FEp~HGSAPd~~~~~-IAGk~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~ 451 (509)
+|+++.++||||+||||||||+.| |||||+ |||+|+|||++|||+|||.+|. |.++.++|++|++||.++++ +|.+
T Consensus 298 ig~~~~~~~FEp~HGSApd~~~~~diaGk~i-ANP~A~IlS~ammL~~l~~~~~-~~g~~~~a~~i~~Av~~~l~-~G~~ 374 (410)
T PLN00103 298 VCPDGKTIEAEAAHGTVTRHYRVHQKGGETS-TNSIASIFAWSRGLAHRAKLDG-NARLLDFTEKLEAACVGTVE-SGKM 374 (410)
T ss_pred cCCCCCcEEEeCCCCcCcccchhhhhcCCCc-cChHHHHHHHHHHHHHhhcccc-ccchHHHHHHHHHHHHHHHH-cCCC
Confidence 998752379999999999988775 999999 9999999999999999987766 66788999999999999999 9999
Q ss_pred CcccccCcchhhhhccccccCHHHHHHHHHHHhhh
Q 010485 452 LNDALLSYSWLILLIDRQFYYLFLLISKISINKYL 486 (509)
Q Consensus 452 T~DLgg~~~~~~~~~~~~~~~T~ef~~~Ii~~~~~ 486 (509)
|+||+..-.|++ ..+.+.++|+||+|+|+++|..
T Consensus 375 T~Dl~~~~~gg~-~~~~~~~~T~e~~daV~~~l~~ 408 (410)
T PLN00103 375 TKDLALLIHGPK-VSRDQYLNTEEFIDAVAEELKA 408 (410)
T ss_pred CcccccccCCCc-ccCCCCcCHHHHHHHHHHHHHh
Confidence 999951000000 0011237999999999999853
No 11
>PRK08194 tartrate dehydrogenase; Provisional
Probab=100.00 E-value=7.4e-102 Score=799.30 Aligned_cols=336 Identities=15% Similarity=0.096 Sum_probs=297.1
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHhcC-----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcch
Q 010485 86 NPIVEMDGDEMTRIIWQMIKDKLIFP-----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (509)
Q Consensus 86 ~~I~vLpGDGIGpEI~~~~~~~l~~~-----~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~~ 160 (509)
++|++||||||||||++++++++.+. +++|+|+++++|.++++++|+++|++|+++||++|++||||+++|.+.
T Consensus 4 ~~I~vipGDGIGpEV~~~a~~vl~a~~~~~~~~~~e~~~~~~G~~~~~~~G~~lp~~tl~~~k~~dail~G~vg~p~~~- 82 (352)
T PRK08194 4 FKIAVIPGDGVGKEVVPAAVRVLKAVAEVHGGLKFEFTEFPWSCEYYLEHGEMMPEDGLEQLKQFDAIFLGAVGNPKLV- 82 (352)
T ss_pred eEEEEECCCCchHHHHHHHHHHHHHHHhhccCCceEEEEEcCcHHHHHHhCCCCCHHHHHHHHhCCEEEEcccCCCCcC-
Confidence 67999999999999999999888432 589999999999999999999999999999999999999999999521
Q ss_pred hhhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCCCC----CCCCEEEEecccCccccccceeecCCCceeeeecC
Q 010485 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPG----WKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDP 236 (509)
Q Consensus 161 ~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~----~~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~ 236 (509)
+.. ...+++|++|||+||||+|+||+ +.+|++.++ .++|+|||||||||+|+|.++... +|.
T Consensus 83 -~~~---~~~~~~~l~LR~~ldLyaNvRP~--k~~pg~~splk~~~~iD~vivREnteG~Y~g~~~~~~-~g~------- 148 (352)
T PRK08194 83 -PDH---ISLWGLLIKIRREFEQVINIRPA--KQLRGIKSPLANPKDFDLLVVRENSEGEYSEVGGRIH-RGE------- 148 (352)
T ss_pred -CCC---CCchhhHHHHHHHcCCEEEEEee--ecCCCCCCCCCCCCCCCEEEEEeCCCccccCCCcccc-CCc-------
Confidence 110 12234599999999999999998 456655433 367999999999999999764321 110
Q ss_pred CCCCCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchhHHHHHHHHHHHhhhhcc
Q 010485 237 EDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKF 316 (509)
Q Consensus 237 ~~g~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f 316 (509)
. +.+.++++|||+++|||+|+||+||++|+++||+|||+||||.++|+|+++|+||++ +|
T Consensus 149 ----~-----------~~a~~~~~~Tr~~~eRI~r~Af~~A~~r~~~Vt~v~KaNvl~~t~~lf~~~~~eva~-~y---- 208 (352)
T PRK08194 149 ----D-----------EIAIQNAVFTRKGTERAMRYAFELAAKRRKHVTSATKSNGIVHSMPFWDEVFQEVGK-DY---- 208 (352)
T ss_pred ----c-----------ceEEEEEEeeHHHHHHHHHHHHHHHHHcCCcEEEEeCcchhhhhHHHHHHHHHHHHh-hC----
Confidence 0 012366789999999999999999999988899999999999999999999999987 89
Q ss_pred CCCCeeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCC-ceeeecCCcccCCccc
Q 010485 317 EEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAHGTVTRHFR 394 (509)
Q Consensus 317 ~~PdI~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~-~a~FEp~HGSAPd~~~ 394 (509)
|+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++. .+||||+||||||
T Consensus 209 --p~V~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GslGl~pSanig~~~~~~alFEp~HGSAPd--- 283 (352)
T PRK08194 209 --PEIETDSQHIDALAAFFVTRPEEFDVIVASNLFGDILTDIGAAIMGSIGIAPAANINVNGKYPSMFEPVHGSAPD--- 283 (352)
T ss_pred --CCceeeehhHHHHHHHHhhChhhCcEEEEccchHHHHhHHHHHhcCCccccceeeecCCCCcceEEECCCCCchh---
Confidence 999999999999999999999999 999999999999999999999999999999997642 4899999999999
Q ss_pred ccccCCCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhhhhccccccCHH
Q 010485 395 LHQKGQETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQFYYLF 474 (509)
Q Consensus 395 ~~IAGk~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~~~~~~~~~T~ 474 (509)
|||||+ |||+|+|||++|||+|||+. ++|++|++||.++++ +|++|+||||+ +||+
T Consensus 284 --iAGk~i-ANP~a~IlS~amML~~lg~~--------~~A~~i~~Av~~~l~-~g~~T~DlGG~------------~~T~ 339 (352)
T PRK08194 284 --IAGKGI-ANPIGQIWTAKLMLDHFGEE--------ELGSHLLDVIEDVTE-DGIKTPDIGGR------------ATTD 339 (352)
T ss_pred --hCCCCc-CCcHHHHHHHHHHHHHcCCh--------hHHHHHHHHHHHHHH-cCCCcCcCCCC------------cCHH
Confidence 999999 99999999999999999974 469999999999999 89999999987 5999
Q ss_pred HHHHHHHHHhh
Q 010485 475 LLISKISINKY 485 (509)
Q Consensus 475 ef~~~Ii~~~~ 485 (509)
||+++|+++|.
T Consensus 340 e~~~ai~~~l~ 350 (352)
T PRK08194 340 EVTDEIISRLK 350 (352)
T ss_pred HHHHHHHHHHh
Confidence 99999999983
No 12
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=100.00 E-value=2.3e-101 Score=796.06 Aligned_cols=336 Identities=16% Similarity=0.108 Sum_probs=296.1
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHhcC-----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcch
Q 010485 86 NPIVEMDGDEMTRIIWQMIKDKLIFP-----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (509)
Q Consensus 86 ~~I~vLpGDGIGpEI~~~~~~~l~~~-----~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~~ 160 (509)
++|++||||||||||++++++++.+. +++|+|+++++|+++++++|+++|++|+++|+++|++||||+++|.+.
T Consensus 4 ~~I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~~da~L~G~vg~p~~~- 82 (352)
T TIGR02089 4 YRIAAIPGDGIGKEVVAAALQVLEAAAKRHGGFSLHFTEFPWSCDYYKEHGKMMPEDGLEKLKKFDAIFLGAVGWPALV- 82 (352)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHHHHhhcCCcceEEEEECCcHHHHHHhCCCCCHHHHHHHHhCCEEEEecccCCCCC-
Confidence 67999999999999999999888532 489999999999999999999999999999999999999999999531
Q ss_pred hhhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCCCC------CCCCEEEEecccCccccccceeecCCCceeeee
Q 010485 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPG------WKKPICIGRHAFGDQYRATDTVIKGPGKLKMVF 234 (509)
Q Consensus 161 ~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~------~~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~ 234 (509)
+. ....+++|+.|||+||||+|+||++ .+|++.++ .++|||||||||||+|+|.+.... ++..
T Consensus 83 -~~---~~~~~~~~l~LRk~ldLyaNvRP~~--~~~g~~sp~k~~~~~~iD~vivREnteG~Y~G~~~~~~-~~~~---- 151 (352)
T TIGR02089 83 -PD---HISLWGLLLKIRREFDQYANVRPAK--LLPGVTSPLRNCGPGDFDFVVVRENSEGEYSGVGGRIH-RGTD---- 151 (352)
T ss_pred -CC---ccCchhhHHHHHHHcCCeEEEEEee--cCCCCCCccccccCCCCCEEEEEecCCccccccccccc-CCcc----
Confidence 11 1233567999999999999999985 45544332 257999999999999999853321 1110
Q ss_pred cCCCCCCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchhHHHHHHHHHHHhhhh
Q 010485 235 DPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQ 314 (509)
Q Consensus 235 ~~~~g~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~ 314 (509)
. +.+.++++|||+++|||+|+||+||++|+++||+|||+||||.++|+|+++|+||++ +|
T Consensus 152 ------~-----------~~a~~~~~~tr~~~eRi~r~Af~~A~~rr~kVt~v~KaNvl~~t~~lf~~~~~eva~-~y-- 211 (352)
T TIGR02089 152 ------E-----------EVATQNAIFTRKGVERIMRFAFELAQKRRKHLTSATKSNGIRHSMPFWDEVFAEVAA-EY-- 211 (352)
T ss_pred ------c-----------eeEEEeEEecHHHHHHHHHHHHHHHHHcCCCEEEEeCCcchhhhhHHHHHHHHHHHh-hC--
Confidence 0 012366789999999999999999999988899999999999999999999999987 89
Q ss_pred ccCCCCeeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCC-ceeeecCCcccCCc
Q 010485 315 KFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAHGTVTRH 392 (509)
Q Consensus 315 ~f~~PdI~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~-~a~FEp~HGSAPd~ 392 (509)
|+|+++|+|||++|||||++|++| ||||+|||||||||++|+++|||||+||+|||+++. .+||||+||||||
T Consensus 212 ----p~v~~~~~~vD~~~~~lv~~P~~fDVivt~NlfGDILSD~aa~l~GglGl~psanig~~~~~~a~fEp~HGSAPd- 286 (352)
T TIGR02089 212 ----PDVEWDSYHIDALAARFVLKPETFDVIVASNLFGDILSDLGAALMGSLGVAPSANINPEGKFPSMFEPVHGSAPD- 286 (352)
T ss_pred ----CCceEeeehHHHHHHHHhcChhhCcEEEecccchhhhhHHHHHhcCCccccceEEecCCCCcceeeecCCCCchh-
Confidence 999999999999999999999999 999999999999999999999999999999997642 3899999999999
Q ss_pred ccccccCCCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhhhhccccccC
Q 010485 393 FRLHQKGQETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQFYY 472 (509)
Q Consensus 393 ~~~~IAGk~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~~~~~~~~~ 472 (509)
|||||+ |||+|+|||++|||+|||+ .++|++|++||.++++ +|++|+||||+ +|
T Consensus 287 ----iAGk~i-ANP~a~Ils~amML~~lg~--------~~~A~~I~~Av~~~l~-~g~~T~DlGG~------------~s 340 (352)
T TIGR02089 287 ----IAGKGI-ANPIGAIWTAAMMLEHLGE--------KEAGAKIMDAIERVTA-AGILTPDVGGK------------AT 340 (352)
T ss_pred ----hcCCCc-cCcHHHHHHHHHHHHHcCC--------hhHHHHHHHHHHHHHH-cCCccCCCCCC------------cC
Confidence 999999 9999999999999999996 4469999999999999 89999999987 59
Q ss_pred HHHHHHHHHHHh
Q 010485 473 LFLLISKISINK 484 (509)
Q Consensus 473 T~ef~~~Ii~~~ 484 (509)
|+||+++|+++|
T Consensus 341 T~e~~~ai~~~l 352 (352)
T TIGR02089 341 TSEVTEAVCNAL 352 (352)
T ss_pred HHHHHHHHHhhC
Confidence 999999999875
No 13
>PRK06451 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1.2e-100 Score=802.27 Aligned_cols=354 Identities=19% Similarity=0.147 Sum_probs=301.7
Q ss_pred EEEEcCCCcHHHHHHHHHHHHhc--C-----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcch
Q 010485 88 IVEMDGDEMTRIIWQMIKDKLIF--P-----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (509)
Q Consensus 88 I~vLpGDGIGpEI~~~~~~~l~~--~-----~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~~ 160 (509)
|++|||||||||||+++++++.+ . +++|+|+++++|+++|+++|+++|++++++|+++|++||||++||.+
T Consensus 26 I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~GavgtP~~-- 103 (412)
T PRK06451 26 ILYVEGDGIGPEITHAAMKVINKAVEKAYGSDREIKWVEVLAGDKAEKLTGNRFPKESEELIEKYRVLLKGPLETPIG-- 103 (412)
T ss_pred EEEecCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCCC--
Confidence 99999999999999999988842 1 26999999999999999999999999999999999999999999953
Q ss_pred hhhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCCCC----CCCCEEEEecccCccccccceeecCCCcee-eeec
Q 010485 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPG----WKKPICIGRHAFGDQYRATDTVIKGPGKLK-MVFD 235 (509)
Q Consensus 161 ~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~----~~~DivIvREnTeG~Y~g~e~~~~~~g~~e-~~~~ 235 (509)
++|+|+|++||++||||+|+||+ +.+|++.++ .++|||||||||||+|+|.++....++..+ ..|.
T Consensus 104 -------~~~~s~~l~LRk~ldLyaNvRPv--k~~pgl~sp~~~~~~iD~vIvREnTeG~Y~g~~~~~~~~~~~~~~~~~ 174 (412)
T PRK06451 104 -------KGWKSINVAIRLMLDLYANIRPV--KYIPGIESPLKNPEKIDLIIFRENTDDLYRGIEYPYDSEEAKKIRDFL 174 (412)
T ss_pred -------cCCcChhHHHHHHcCCeEeecee--ecCCCCCCcccCcCCccEEEEEeccCCeeecccccccccccccccccc
Confidence 35899999999999999999998 566666543 367999999999999999986432111100 0011
Q ss_pred CC-CCCCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchhHHHHHHHHHHHhhh
Q 010485 236 PE-DGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWR 313 (509)
Q Consensus 236 ~~-~g~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rk-k~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~ 313 (509)
.+ .+.. + ...-+.+..+||+++++||+|+||+||++|+ ++||+|||+||||++||+|+++|+||+++||.
T Consensus 175 ~~~~~~~-----~---~~~~a~~~~~~t~~~~eRIar~AF~~A~~r~~kkVt~v~KaNVlk~t~glf~~~~~eva~~eyp 246 (412)
T PRK06451 175 RKELGVE-----V---EDDTGIGIKLISKFKTQRIARMAIKYAIDHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEFR 246 (412)
T ss_pred ccccccc-----c---ccceecceeeeeHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchhhHHHHHHHHHHHhCC
Confidence 11 0000 0 0011236678999999999999999999996 67999999999999999999999999976784
Q ss_pred h--------------ccCCCCeeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCC
Q 010485 314 Q--------------KFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK 378 (509)
Q Consensus 314 ~--------------~f~~PdI~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~ 378 (509)
+ +|.+|+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|+|+++
T Consensus 247 d~~~~~~~~~~~y~~~~~~~~I~~~~~~vDa~~~~Lv~~P~~FDVivt~NlfGDILSDlaa~l~GglGl~pSanig~~~- 325 (412)
T PRK06451 247 DYVVTEEEVTKNYNGVPPSGKVIINDRIADNMFQQIIIRPDEYDIILAPNVNGDYISDAAGALVGNIGMLGGANIGDTG- 325 (412)
T ss_pred cccccccchhhccccccccCceEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhcCchhhcceeeeCCCC-
Confidence 3 5666689999999999999999999999 99999999999999999999999999999999764
Q ss_pred ceeeecCCcccCCcccccccCCCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccC
Q 010485 379 TLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLS 458 (509)
Q Consensus 379 ~a~FEp~HGSAPd~~~~~IAGk~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~ 458 (509)
+||||+|||||| |||||+ |||+|+|||++|||+|||+. ++|++|++||.++|+ +|.+|+||++.
T Consensus 326 -alFEpvHGSAPd-----iAGk~i-ANP~a~IlS~amML~~lg~~--------~~A~~I~~Av~~vl~-~G~~T~Dl~~~ 389 (412)
T PRK06451 326 -GMFEAIHGTAPK-----YAGKNV-ANPTGIIKGGELMLRFMGWD--------KAADLIDKAIMESIK-QKKVTQDLARF 389 (412)
T ss_pred -ceeECCCCCccc-----cCCCCC-cCcHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHHHH-cCCcCcccccc
Confidence 899999999999 999999 99999999999999999974 469999999999999 99999999642
Q ss_pred cchhhhhccccccCHHHHHHHHHHHh
Q 010485 459 YSWLILLIDRQFYYLFLLISKISINK 484 (509)
Q Consensus 459 ~~~~~~~~~~~~~~T~ef~~~Ii~~~ 484 (509)
. | ++.++|+||+|+|+++|
T Consensus 390 ~-g------g~~~~T~e~~daI~~~l 408 (412)
T PRK06451 390 M-G------VRALSTTEYTDELISII 408 (412)
T ss_pred C-C------CCccCHHHHHHHHHHHH
Confidence 1 1 11269999999999998
No 14
>PRK07006 isocitrate dehydrogenase; Reviewed
Probab=100.00 E-value=1.5e-100 Score=802.25 Aligned_cols=359 Identities=19% Similarity=0.134 Sum_probs=303.7
Q ss_pred EEEEcCCCcHHHHHHHHHHHHhc--C-----CCCeEEEEEecchHHHhhcCC--CCcHHHHHHHHhcCeeeecCCCCCCc
Q 010485 88 IVEMDGDEMTRIIWQMIKDKLIF--P-----YLDLDIKYYDLGILNRDATDD--KVTVESAEATLKYNVAIKCATITPDE 158 (509)
Q Consensus 88 I~vLpGDGIGpEI~~~~~~~l~~--~-----~~~i~~~~~~~G~~~~~~tG~--~lp~etleaik~~da~lkg~~~tP~~ 158 (509)
|++|||||||||||+++++++.+ . +++|+|+++++|.++++++|+ ++|++|+++|+++|++||||++||.+
T Consensus 22 I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~G~i~tp~~ 101 (409)
T PRK07006 22 IPFIEGDGIGPDITPAMLKVVDAAVEKAYKGERKISWMEIYAGEKATKVYGEDVWLPEETLDLIREYRVAIKGPLTTPVG 101 (409)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHhhCCcCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 99999999999999999988842 1 259999999999999999999 99999999999999999999999953
Q ss_pred chhhhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCCCC----CCCCEEEEecccCccccccceeecCCC-ceeee
Q 010485 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPG----WKKPICIGRHAFGDQYRATDTVIKGPG-KLKMV 233 (509)
Q Consensus 159 ~~~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~----~~~DivIvREnTeG~Y~g~e~~~~~~g-~~e~~ 233 (509)
.+++|+|++||++||||+|+||++ .+|++.+. .++|||||||||||+|+|.++....++ .....
T Consensus 102 ---------~~~~s~~l~LR~~ldLyaNvRPvk--~~pgl~~plk~~~~iD~vIvREnteG~Y~g~~~~~~~~~~~~~~~ 170 (409)
T PRK07006 102 ---------GGIRSLNVALRQELDLYVCLRPVR--YFKGVPSPVKRPEDTDMVIFRENSEDIYAGIEWKAGSAEAKKVIK 170 (409)
T ss_pred ---------cCccChHHHHHHHcCCEEEEEEEe--cCCCCCCCCCCCCCCCEEEEEeccCCeecccccccCCcccceeee
Confidence 246799999999999999999985 45544332 257999999999999999975422111 11111
Q ss_pred ecCCCCCCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchhHHHHHHHHHHHhh
Q 010485 234 FDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERW 312 (509)
Q Consensus 234 ~~~~~g~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rk-k~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY 312 (509)
|.+... .++++++....+.+..+|||+++|||+|+||+||++|+ ++||+|||+||||.+||+|++|+.|||+++|
T Consensus 171 ~~~~~~----~~~~~~~~~~~a~~~~v~Tr~~~eRi~r~AFe~A~~r~rkkVt~v~KaNVlk~tdglf~~~~~eva~~ey 246 (409)
T PRK07006 171 FLQEEM----GVKKIRFPETSGIGIKPVSEEGTERLVRAAIEYAIDNDRKSVTLVHKGNIMKFTEGAFKDWGYQLAEEEF 246 (409)
T ss_pred cccccc----CcccccccccceEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchHHHHHHHHHHHHHHh
Confidence 221110 12223333333446778899999999999999999996 6799999999999999999998889998789
Q ss_pred hhccCC-------------CCeeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCC
Q 010485 313 RQKFEE-------------HSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK 378 (509)
Q Consensus 313 ~~~f~~-------------PdI~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~ 378 (509)
+++|++ |+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|+|++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~p~v~~~~~~vDa~~~~lv~~P~~fDVIvt~NlfGDILSDlaa~l~GglGlapSanig~~-- 324 (409)
T PRK07006 247 GDELIDGGPWDKIKNPETGKEIIVKDSIADAFLQQILLRPAEYDVIATMNLNGDYISDALAAQVGGIGIAPGANINDG-- 324 (409)
T ss_pred hhhhhccccccccccccCCCCceeehHHHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcccceeCCC--
Confidence 877776 899999999999999999999999 9999999999999999999999999999999954
Q ss_pred ceeeecCCcccCCcccccccCCCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccC
Q 010485 379 TLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLS 458 (509)
Q Consensus 379 ~a~FEp~HGSAPd~~~~~IAGk~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~ 458 (509)
.+||||+|||||| |||||+ |||+|+|||++|||+|||+. ++|++|++||.++|+ +|++|+||+..
T Consensus 325 ~a~FEpvHGSAPd-----iAGk~i-ANP~a~IlS~amML~~lG~~--------~~A~~Ie~Av~~~l~-~G~~T~Dl~~~ 389 (409)
T PRK07006 325 HAIFEATHGTAPK-----YAGLDK-VNPGSVILSAEMMLRHMGWT--------EAADLIIKSMEKTIA-SKTVTYDFARL 389 (409)
T ss_pred ceEEECCCCcchh-----hCCCCC-cChHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHHHh-cCCcccccccc
Confidence 5999999999999 999999 99999999999999999974 469999999999999 99999999621
Q ss_pred cchhhhhccccccCHHHHHHHHHHHh
Q 010485 459 YSWLILLIDRQFYYLFLLISKISINK 484 (509)
Q Consensus 459 ~~~~~~~~~~~~~~T~ef~~~Ii~~~ 484 (509)
..| ++.++|+||+|+|+++|
T Consensus 390 ~~g------g~~~~T~e~~daI~~~l 409 (409)
T PRK07006 390 MEG------ATEVKCSEFGDALIKNM 409 (409)
T ss_pred CCC------CcccCHHHHHHHHHhhC
Confidence 101 11269999999999875
No 15
>PLN02329 3-isopropylmalate dehydrogenase
Probab=100.00 E-value=9.8e-101 Score=800.30 Aligned_cols=344 Identities=16% Similarity=0.080 Sum_probs=296.3
Q ss_pred ccccEEEEcCCCcHHHHHHHHHHHHhcC----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcc
Q 010485 84 VQNPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (509)
Q Consensus 84 ~~~~I~vLpGDGIGpEI~~~~~~~l~~~----~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~ 159 (509)
+.++|++|||||||||||+++++++.+. +++|+|+++++|+++++++|+++|++|+++|+++|++||||+++|.+.
T Consensus 45 ~~~~IavipGDGIGPEV~~aa~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lP~~tl~~~~~~DaiL~Gavg~p~~~ 124 (409)
T PLN02329 45 KRYNIALLPGDGIGPEVISVAKNVLQKAGSLEGLEFDFQEMPVGGAALDLVGVPLPEETFTAAKQSDAILLGAIGGYKWD 124 (409)
T ss_pred ceEEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCCCC
Confidence 4578999999999999999999888532 689999999999999999999999999999999999999999999532
Q ss_pred hhhhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCCC--------CCCCCEEEEecccCccccccceeecCCCcee
Q 010485 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVP--------GWKKPICIGRHAFGDQYRATDTVIKGPGKLK 231 (509)
Q Consensus 160 ~~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~--------~~~~DivIvREnTeG~Y~g~e~~~~~~g~~e 231 (509)
..+ ..+ ...++|++|||+||||+|+||++ .+|++.. ..++|+|||||||||+|+|.++......
T Consensus 125 ~~~-~~~--~~e~~ll~LRk~ldLyaNvRPvr--~~pg~~~~splk~~~~~~iD~vIVREnTEG~Y~G~~~~~~~~~--- 196 (409)
T PLN02329 125 KNE-KHL--RPEMALFYLRRDLKVFANLRPAT--VLPQLVDASTLKKEVAEGVDMMIVRELTGGIYFGEPRGITINE--- 196 (409)
T ss_pred CCc-ccc--cccccHHHHHHHcCCeEeeeeee--ccCCCCCcCcccccccCCceEEEEEECCCCeecCCCcceeccc---
Confidence 100 000 01256999999999999999985 4554432 1267999999999999999864211000
Q ss_pred eeecCCCCCCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchhHHHHHHHHHHHh
Q 010485 232 MVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEER 311 (509)
Q Consensus 232 ~~~~~~~g~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNVlk~tdglf~~i~~eVa~~e 311 (509)
.+ . +.+.++++|||+++|||+|+||+||++|+++||+|||+|||| ++++|+++|+|||+ +
T Consensus 197 ------~~-~-----------~~a~~~~~iTr~~~eRI~r~AFe~A~~r~~kVT~v~KaNVl~-t~~lf~~~~~evA~-e 256 (409)
T PLN02329 197 ------NG-E-----------EVGVSTEIYAAHEIDRIARVAFETARKRRGKLCSVDKANVLD-ASILWRKRVTALAS-E 256 (409)
T ss_pred ------CC-c-----------eeEEEeEEecHHHHHHHHHHHHHHHHHcCCeEEEEECCCCcc-chHHHHHHHHHHHh-h
Confidence 00 0 112367789999999999999999999988999999999999 99999999999987 8
Q ss_pred hhhccCCCCeeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccC
Q 010485 312 WRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVT 390 (509)
Q Consensus 312 Y~~~f~~PdI~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAP 390 (509)
| |+|+++|+|||++|||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ .+||||+|||||
T Consensus 257 y------PdV~~~~~~VDa~a~~LV~~P~~FDVIVt~NLfGDILSDlaa~l~GglGlaPSanig~~~-~a~FEpvHGSAP 329 (409)
T PLN02329 257 Y------PDVELSHMYVDNAAMQLIRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESG-PGLFEPIHGSAP 329 (409)
T ss_pred C------CCcccchhHHHHHHHHHhcCchhCCEEEEcCcccccccHHHHHhcCCcccCceeecCCCC-ceeeeccCCCch
Confidence 9 999999999999999999999999 99999999999999999999999999999999875 589999999999
Q ss_pred CcccccccCCCCCcChhHHHHHHHHHHHH-hhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhhhhcccc
Q 010485 391 RHFRLHQKGQETSTNSIASIFAWTRGLEH-RYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQ 469 (509)
Q Consensus 391 d~~~~~IAGk~i~ANPiA~IlS~amML~h-lG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~~~~~~ 469 (509)
| |||||+ |||+|+|||++|||+| ||+. +.|++|++||.++|+ +|.+|+||++. | ++
T Consensus 330 d-----IAGk~i-ANP~A~ILS~amML~~~Lg~~--------~~A~~I~~AV~~vl~-~g~~T~Dl~~~--G------g~ 386 (409)
T PLN02329 330 D-----IAGQDK-ANPLATILSAAMLLKYGLGEE--------KAAKRIEDAVVDALN-KGFRTGDIYSP--G------NK 386 (409)
T ss_pred h-----hcCCcc-cChHHHHHHHHHHHhhhCCCH--------HHHHHHHHHHHHHHH-cCCcCcccccC--C------CC
Confidence 9 999999 9999999999999999 9974 469999999999999 99999999431 1 11
Q ss_pred ccCHHHHHHHHHHHhh
Q 010485 470 FYYLFLLISKISINKY 485 (509)
Q Consensus 470 ~~~T~ef~~~Ii~~~~ 485 (509)
.++|+||+|+|+++|.
T Consensus 387 ~~~T~e~~daIi~~l~ 402 (409)
T PLN02329 387 LVGCKEMGEEVLKSVD 402 (409)
T ss_pred ccCHHHHHHHHHHHHH
Confidence 1599999999999993
No 16
>PRK09222 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1.1e-100 Score=812.42 Aligned_cols=347 Identities=18% Similarity=0.136 Sum_probs=309.4
Q ss_pred ccccEEEEcCCCcHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcC-CCCcHHHHHHHHhcCeeeecCCCCCCcchhh
Q 010485 84 VQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATD-DKVTVESAEATLKYNVAIKCATITPDETRMK 162 (509)
Q Consensus 84 ~~~~I~vLpGDGIGpEI~~~~~~~l~~~~~~i~~~~~~~G~~~~~~tG-~~lp~etleaik~~da~lkg~~~tP~~~~~~ 162 (509)
+.++|++|||||||||||+++++++.+.+++|+|+++++|.++|+++| +++|++++++|+++|++||||++||.+
T Consensus 3 ~~~~I~vipGDGIGPEV~~a~~~VL~a~~~~i~~~~~~~G~~~~~~~g~~~lp~~~~~~i~~~da~LkG~i~tP~~---- 78 (482)
T PRK09222 3 EKTPITVAYGDGIGPEIMEAVLKILEAAGAPLEIETIEIGEKVYKKGWTSGISPSAWESIRRTKVLLKAPITTPQG---- 78 (482)
T ss_pred CcceEEEECCCcccHHHHHHHHHHHHhcCCceEEEEEcCCHHHHHhcCCCCCCHHHHHHHHHCCEEEEccccCCCc----
Confidence 347899999999999999999999987789999999999999999987 799999999999999999999999953
Q ss_pred hhcccccCCCCchhHhhhcCceEEeeccccCCC-CCCCCC-CCCCEEEEecccCccccccceeecCCCceeeeecCCCCC
Q 010485 163 EFGLKSMWRSPNGTIRNILNGTVFREPILCQNI-PRIVPG-WKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGT 240 (509)
Q Consensus 163 e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~l-p~l~~~-~~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~g~ 240 (509)
++++|+|++||+.||||||+||+ +.+ |++... .++|||||||||||+|+|+|++.. ++.
T Consensus 79 -----~~~~s~~~~LRk~ldLYaNvRP~--r~~~pgv~~~~~~iD~vIVRENtEG~Y~G~e~~~~-~~~----------- 139 (482)
T PRK09222 79 -----GGYKSLNVTLRKTLGLYANVRPC--VSYHPFVETKHPNLDVVIIRENEEDLYAGIEHRQT-PDV----------- 139 (482)
T ss_pred -----cCccchHHHHHHHcCCeEEeeeE--EecCCCCCCCCCCcCEEEEEeccCCeeccceeecC-CCe-----------
Confidence 34689999999999999999998 567 666543 368999999999999999986521 111
Q ss_pred CceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchhHHHHHHHHHHHhhhhccCCC
Q 010485 241 GPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319 (509)
Q Consensus 241 ~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rk-k~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~~P 319 (509)
+..+.+|||+++|||+|+||+||++|+ ++||++||+||||.+||+|+++|+|||+ +| |
T Consensus 140 --------------~~~~k~iTr~~~eRI~r~AFe~A~~r~rkkVt~v~KaNVmk~tdglf~~v~~eva~-ey------P 198 (482)
T PRK09222 140 --------------YQCLKLISRPGSEKIIRYAFEYARANGRKKVTCLTKDNIMKLTDGLFHKVFDEIAK-EY------P 198 (482)
T ss_pred --------------eeEeeccCHHHHHHHHHHHHHHHHhcCCCeEEEEECCCcccccchHHHHHHHHHHh-hC------C
Confidence 114466899999999999999999997 6799999999999999999999999987 89 9
Q ss_pred CeeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCCccccccc
Q 010485 320 SIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQK 398 (509)
Q Consensus 320 dI~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd~~~~~IA 398 (509)
+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||++ .+||||+|||||| ||
T Consensus 199 dI~~~~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaa~l~GslGlapSanig~~--~amFEpvHGSAPd-----IA 271 (482)
T PRK09222 199 DIEAEHYIVDIGAARLATNPENFDVIVTPNLYGDILSDIAAEISGSVGLAGSANIGEE--YAMFEAVHGSAPD-----IA 271 (482)
T ss_pred CceEeeeeHHHHHHHHhcCcccceEEEEcccccchhhHHHHHhcCCcccccceecCCC--ceeeECCCCCchh-----hc
Confidence 99999999999999999999999 9999999999999999999999999999999976 4999999999999 99
Q ss_pred CCCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhhhhccccccCHHHHHH
Q 010485 399 GQETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQFYYLFLLIS 478 (509)
Q Consensus 399 Gk~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~~~~~~~~~T~ef~~ 478 (509)
|||| |||+|+|||++|||+|||+. ++|++|++||.++|+ +|++|+||+|. +. +...++|+||++
T Consensus 272 Gk~i-ANP~a~IlSaamML~hlG~~--------~~A~~I~~Av~~tl~-~G~~T~Dl~g~--~~----~~~~~~T~e~~~ 335 (482)
T PRK09222 272 GKNI-ANPSGLLNAAVMMLVHIGQF--------DIAELIENAWLKTLE-DGIHTADIYNE--GV----SKKKVGTKEFAE 335 (482)
T ss_pred CCCc-cCcHHHHHHHHHHHHHcCCh--------HHHHHHHHHHHHHHH-cCCCCcccCCC--CC----CCCCcCHHHHHH
Confidence 9999 99999999999999999974 469999999999999 99999999763 10 011379999999
Q ss_pred HHHHHhhhhHHHHHHHHHh
Q 010485 479 KISINKYLEFRQLLGSLRS 497 (509)
Q Consensus 479 ~Ii~~~~~~~~~~~~a~~~ 497 (509)
+|+++|+++++.+-.+-.+
T Consensus 336 aVi~~l~~~p~~~~~~~~~ 354 (482)
T PRK09222 336 AVIENLGQKPEKLKPASYP 354 (482)
T ss_pred HHHHHHhcCcccccccccc
Confidence 9999999977766554443
No 17
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type. Prokaryotic NADP-dependent isocitrate dehydrogenases resemble their NAD-dependent counterparts and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent isocitrate dehydrogenases.
Probab=100.00 E-value=2.8e-100 Score=802.61 Aligned_cols=361 Identities=20% Similarity=0.139 Sum_probs=301.9
Q ss_pred EEEEcCCCcHHHHHHHHHHHHhcC-------CCCeEEEEEecchHHHhhcC--CCCcHHHHHHHHhcCeeeecCCCCCCc
Q 010485 88 IVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATD--DKVTVESAEATLKYNVAIKCATITPDE 158 (509)
Q Consensus 88 I~vLpGDGIGpEI~~~~~~~l~~~-------~~~i~~~~~~~G~~~~~~tG--~~lp~etleaik~~da~lkg~~~tP~~ 158 (509)
|++|||||||||||+++++++.+. +++|+|+++++|+++++++| +++|++++++|+++|++||||++||..
T Consensus 29 I~vipGDGIGpEv~~~a~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~Ga~~tp~~ 108 (416)
T TIGR00183 29 IPYIEGDGIGVDVTPAAIKVLDAAVEKAYKGEKKIVWFEVYAGEKAYQLYGQDQWLPADTLDAIKEYRVAIKGPLTTPVG 108 (416)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 999999999999999999887421 15999999999999999999 999999999999999999999999953
Q ss_pred chhhhhcccccCCCCchhHhhhcCceEEeecccc-CCCCCCCCC-CCCCEEEEecccCccccccceeecCCCceee-eec
Q 010485 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILC-QNIPRIVPG-WKKPICIGRHAFGDQYRATDTVIKGPGKLKM-VFD 235 (509)
Q Consensus 159 ~~~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~-k~lp~l~~~-~~~DivIvREnTeG~Y~g~e~~~~~~g~~e~-~~~ 235 (509)
.+|+|+|+.||+.||||||+||++. +++|++.+. .++|||||||||||+|+|.++....++..++ .|.
T Consensus 109 ---------~~~~s~~l~LR~~ldLyaNvRP~k~~pgl~s~~~~~~~vDivIvREnteG~Y~g~~~~~~~~~~~~~~~~~ 179 (416)
T TIGR00183 109 ---------GGIRSLNVALRQELDLYVCLRPVRYYKGVPSPVKHPEKVDMVIFRENTEDIYAGIEWAEGSEEAKKLIRFL 179 (416)
T ss_pred ---------ccccCcHHHHHHHcCCEEEEeEeecCCCCCCcCCCCCCCCEEEEEeCCCCcccccccccCcccceeeeccc
Confidence 3578999999999999999999853 444433222 2679999999999999999865332221111 122
Q ss_pred CCCCCCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchhHHHHHHHHHHHhhhh
Q 010485 236 PEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQ 314 (509)
Q Consensus 236 ~~~g~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rk-k~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~ 314 (509)
+..++ .+..+|..+-+.++.+||+++++||+|+||+||++|+ ++||+|||+||||.+||+|+++|.||+++||+.
T Consensus 180 ~~~~g----~~~~~~~~~~a~~~~~~tr~~~~Riar~AFe~A~~r~rk~Vt~v~KaNvlk~tdglf~e~~~eva~~ey~~ 255 (416)
T TIGR00183 180 QNELG----VKKIRFPEDSGIGIKPISEEGTKRLVRAAIEYAIENDRKSVTLVHKGNIMKFTEGAFRDWGYELAKKEFGA 255 (416)
T ss_pred ccccC----ccccccccccEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccchhhHHHHHHHHHHHHHhH
Confidence 11110 1111222223346778999999999999999999995 689999999999999999999999999877876
Q ss_pred ccCC-------------CCeeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCce
Q 010485 315 KFEE-------------HSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTL 380 (509)
Q Consensus 315 ~f~~-------------PdI~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a 380 (509)
+|++ |+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||++ .+
T Consensus 256 ~~~~~~lw~~~~~p~~~p~I~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GslGlapSanig~~--~a 333 (416)
T TIGR00183 256 ECITWGLWDKYKNPNPGKEIVIKDRIADAFLQQILTRPDEYDVIATMNLNGDYISDALAAQVGGIGIAPGANIGDE--IG 333 (416)
T ss_pred hhhhccccccccCcccCCceeEeehhHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcceeeeCCC--ce
Confidence 6554 499999999999999999999999 9999999999999999999999999999999965 59
Q ss_pred eeecCCcccCCcccccccCCCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcc
Q 010485 381 EAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYS 460 (509)
Q Consensus 381 ~FEp~HGSAPd~~~~~IAGk~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~ 460 (509)
||||+|||||| |||||+ |||+|+|||++|||+|||+ .++|++|++||.++|+ +|++|+||++...
T Consensus 334 lFEp~HGSAPd-----iAGk~i-ANP~a~IlS~amML~~lg~--------~~~A~~Ie~AV~~~l~-~G~~T~Dl~~~~g 398 (416)
T TIGR00183 334 IFEATHGTAPK-----YAGQDK-VNPGSIILSGEMMLEHMGW--------KEAADLIKKAMEKAIA-SKIVTYDFARLMD 398 (416)
T ss_pred EEECCCCCchh-----hcCCCC-CCcHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHH-cCCcccccccccC
Confidence 99999999999 999999 9999999999999999996 4569999999999999 9999999952100
Q ss_pred hhhhhccccccCHHHHHHHHHHHh
Q 010485 461 WLILLIDRQFYYLFLLISKISINK 484 (509)
Q Consensus 461 ~~~~~~~~~~~~T~ef~~~Ii~~~ 484 (509)
| .+.++|+||+|+|+++|
T Consensus 399 g------~~~~~T~e~~daI~~~l 416 (416)
T TIGR00183 399 G------AKEVKCSEFAEAIIENM 416 (416)
T ss_pred C------CcccCHHHHHHHHHhhC
Confidence 0 01269999999999875
No 18
>TIGR02924 ICDH_alpha isocitrate dehydrogenase. This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear.
Probab=100.00 E-value=1.6e-100 Score=808.91 Aligned_cols=342 Identities=21% Similarity=0.154 Sum_probs=305.4
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcC-CCCcHHHHHHHHhcCeeeecCCCCCCcchhhhhc
Q 010485 87 PIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATD-DKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (509)
Q Consensus 87 ~I~vLpGDGIGpEI~~~~~~~l~~~~~~i~~~~~~~G~~~~~~tG-~~lp~etleaik~~da~lkg~~~tP~~~~~~e~~ 165 (509)
||++|||||||||||++++++|.+.+++|+|+++++|.++|+++| +++|++++++|+++|++||||++||.+
T Consensus 2 ~I~vipGDGIGPEV~~aa~~VL~a~~~~i~~~~~~~G~~~~~~~gg~~lpdetl~~i~~~da~LkG~i~tp~~------- 74 (473)
T TIGR02924 2 PITVAYGDGIGPEIMEAVLLILKEAEAPIDIETIEIGEKVYKKGWPSGISPSSWESIRRTKVLLKAPITTPQG------- 74 (473)
T ss_pred eEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCCHHHHHHHHHCCEEEECcccCCCc-------
Confidence 699999999999999999999977789999999999999999995 899999999999999999999999953
Q ss_pred ccccCCCCchhHhhhcCceEEeeccccCCC-CCCCCCC-CCCEEEEecccCccccccceeecCCCceeeeecCCCCCCce
Q 010485 166 LKSMWRSPNGTIRNILNGTVFREPILCQNI-PRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPV 243 (509)
Q Consensus 166 L~~~~~S~n~~LRk~LdLyanvRPi~~k~l-p~l~~~~-~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~g~~~~ 243 (509)
.+++|+|++|||.||||||+||+ +++ |++.+.+ ++|+|||||||||+|+|+|+... ++.
T Consensus 75 --~~~~s~~~~LRk~ldLYANvRPv--~~~~p~~~~~~~~vDiVIVRENtEGlY~G~e~~~~-~~~-------------- 135 (473)
T TIGR02924 75 --GGHKSLNVTLRKTLGLYANIRPC--VSYHPFIETKSPNLNIVIVRENEEDLYTGIEYRQT-PDT-------------- 135 (473)
T ss_pred --cCcccHHHHHHHHcCCeEEEEEe--eccCCCCCCccCCcCEEEEEeccCceecCceeecc-CCh--------------
Confidence 24679999999999999999998 567 5554433 68999999999999999986531 111
Q ss_pred eeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchhHHHHHHHHHHHhhhhccCCCCee
Q 010485 244 ELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIW 322 (509)
Q Consensus 244 ~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rk-k~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~~PdI~ 322 (509)
+..+.+|||+++|||+|+||+||++|+ +|||++||+||||.|||+|+++|+||++ +| |+|+
T Consensus 136 -----------~~~~kviTr~g~eRI~r~AFe~A~~r~rkkVT~v~KaNVmk~tdglf~e~~~eva~-ey------PdI~ 197 (473)
T TIGR02924 136 -----------YECTKLITRSGSEKICRYAFEYARKHNRKKVTCLTKDNIMKMTDGIFHKIFDKIAA-EY------PDIE 197 (473)
T ss_pred -----------heEeEecCHHHHHHHHHHHHHHHHhcCCCeEEEEECCccccccchhHHHHHHHHHh-hC------CCcE
Confidence 114456899999999999999999996 6799999999999999999999999987 89 9999
Q ss_pred EeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCCcccccccCCC
Q 010485 323 YEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQE 401 (509)
Q Consensus 323 ~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd~~~~~IAGk~ 401 (509)
++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||++ ++||||+|||||| |||||
T Consensus 198 ~e~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaA~l~GslGlapSaNiG~~--~amFEpvHGSAPd-----IAGk~ 270 (473)
T TIGR02924 198 SEHYIVDIGMARLATNPENFDVIVTPNLYGDILSDVAAEISGSVGLAGSANIGEE--YAMFEAVHGSAPD-----IAGQN 270 (473)
T ss_pred EeeHHHHHHHHHHhhCcccceEEEEccccchhhhHHHHHhcCCcCcccceecCCC--cceeecCCCchhh-----hCCCC
Confidence 99999999999999999999 9999999999999999999999999999999976 4999999999999 99999
Q ss_pred CCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhhhhccccccCHHHHHHHHH
Q 010485 402 TSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQFYYLFLLISKIS 481 (509)
Q Consensus 402 i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~~~~~~~~~T~ef~~~Ii 481 (509)
+ |||+|+|||++|||+|||+. ++|++|++||.++|+ +|++|+||+|... ++..++|+||+|+|+
T Consensus 271 i-ANP~a~IlSaamML~hLG~~--------~~A~~I~~AV~~vl~-~G~~T~Dl~~~~~------~gg~~sT~e~~daVi 334 (473)
T TIGR02924 271 I-ANPSGLLNAAIQMLVHIGQS--------DIAQLIYNAWLKTLE-DGVHTADIYNEKT------SKQKVGTKEFAEAVT 334 (473)
T ss_pred c-cChHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHHHH-cCCcCcccccccc------CCCCcCHHHHHHHHH
Confidence 9 99999999999999999974 469999999999999 9999999975310 011379999999999
Q ss_pred HHhhhhHHHHHHHH
Q 010485 482 INKYLEFRQLLGSL 495 (509)
Q Consensus 482 ~~~~~~~~~~~~a~ 495 (509)
++|+++++++-.+.
T Consensus 335 ~~l~~~p~~~~~~~ 348 (473)
T TIGR02924 335 ANLGKKPETLPKAL 348 (473)
T ss_pred HHhccccccCcccc
Confidence 99999776654443
No 19
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=100.00 E-value=1e-99 Score=779.56 Aligned_cols=325 Identities=18% Similarity=0.139 Sum_probs=294.4
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchhhhhc
Q 010485 86 NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (509)
Q Consensus 86 ~~I~vLpGDGIGpEI~~~~~~~l~~~~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~~~~e~~ 165 (509)
++|++|||||||||||+++++++.+.+++|+|+++++|++ +++|+++|++++++|+++|++||||+++|...
T Consensus 4 ~~i~vlpGDGIGpEv~~~a~~vl~~~~~~i~~~~~~~G~~--~~~g~~lp~~~l~~~~~~da~l~Gav~~p~~~------ 75 (333)
T TIGR00175 4 YTVTLIPGDGIGPEISGSVKKIFRAANVPIEFEEIDVSPQ--TDGKTEIPDEAVESIKRNKVALKGPLETPIGK------ 75 (333)
T ss_pred EEEEEECCCcccHHHHHHHHHHHHhCCCceEEEEEecChh--hccCCcCCHHHHHHHHHCCEEEEcccCCcccc------
Confidence 5799999999999999999999977789999999999997 67899999999999999999999999998532
Q ss_pred ccccCCCCchhHhhhcCceEEeeccccCCCCCCCCCC-CCCEEEEecccCccccccceeecCCCceeeeecCCCCCCcee
Q 010485 166 LKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVE 244 (509)
Q Consensus 166 L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~~-~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~g~~~~~ 244 (509)
..++|+|++||++||||+|+||+ |.+|++.+.+ +.||+||||||||+|+|.++.. .++.
T Consensus 76 --~~~~s~~~~lR~~ldlyanvRP~--k~~pg~~~~~~~iD~vivREnteG~Y~g~~~~~-~~~~--------------- 135 (333)
T TIGR00175 76 --GGHRSLNVALRKELDLYANVVHC--KSLPGFKTRHEDVDIVIIRENTEGEYSGLEHES-VPGV--------------- 135 (333)
T ss_pred --ccccchhHHHHHHcCCEEEeEEe--cCCCCCCCCCCCcCEEEEEEeCCCcccceeEec-cCCe---------------
Confidence 12689999999999999999998 6677765543 6799999999999999987542 1111
Q ss_pred eeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchhHHHHHHHHHHHhhhhccCCCCeeE
Q 010485 245 LDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWY 323 (509)
Q Consensus 245 ~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rk-k~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~~PdI~~ 323 (509)
+.++++|||+++|||+|+||+||++|+ ++||++||+||||.+||+|+++|+||++ +| |+|++
T Consensus 136 ----------~~~~~~~Tr~~~eRi~r~Af~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva~-~y------p~v~~ 198 (333)
T TIGR00175 136 ----------VESLKVITRDKSERIARYAFEYARKNGRKKVTAVHKANIMKLADGLFLNVCREVAK-EY------PDITF 198 (333)
T ss_pred ----------EEEEEecCHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhHHHHHHHHHHHHH-HC------CCCee
Confidence 114566899999999999999999997 5699999999999999999999999987 79 99999
Q ss_pred eeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecC-CcccCCcccccccCCC
Q 010485 324 EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAA-HGTVTRHFRLHQKGQE 401 (509)
Q Consensus 324 e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~-HGSAPd~~~~~IAGk~ 401 (509)
+|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|+|+++ ++|||+ |||||| |||||
T Consensus 199 ~~~~vDa~~~~lv~~P~~fdViVt~NlfGDILSDlaa~l~GslGl~pSanig~~~--a~fEp~~hGSApd-----iaGk~ 271 (333)
T TIGR00175 199 ESMIVDNTCMQLVSRPSQFDVMVMPNLYGNILSNLGAGLVGGPGLVPGANIGRDY--AVFEPGVRHTGPD-----IAGQN 271 (333)
T ss_pred eeeeHHHHHHHHhcCcccccEEEEccccchhhhHHHHHhcCCcccCceeEEcCCC--ceEeccCCCCchh-----hCCCC
Confidence 9999999999999999999 99999999999999999999999999999999764 899995 599999 99999
Q ss_pred CCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCC-CcCcccccCcchhhhhccccccCHHHHHHHH
Q 010485 402 TSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSI-SLLNDALLSYSWLILLIDRQFYYLFLLISKI 480 (509)
Q Consensus 402 i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G-~~T~DLgg~~~~~~~~~~~~~~~T~ef~~~I 480 (509)
+ |||+|+|||++|||+|||+ .++|++|++||.++|+ +| .+|+||||+ ++|+||+++|
T Consensus 272 i-aNP~a~Ils~ammL~~lG~--------~~~a~~i~~Av~~~l~-~G~~~T~DlGG~------------~~T~e~~~ai 329 (333)
T TIGR00175 272 I-ANPTALILSSVMMLNHLGL--------KEHADRIQKAVLSTIA-EGKNRTKDLGGT------------ATTSDFTEAV 329 (333)
T ss_pred c-cChHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHH-cCCccChhcCCC------------cCHHHHHHHH
Confidence 8 9999999999999999996 4469999999999999 88 799999987 5999999999
Q ss_pred HHHh
Q 010485 481 SINK 484 (509)
Q Consensus 481 i~~~ 484 (509)
+++|
T Consensus 330 ~~~l 333 (333)
T TIGR00175 330 IKRL 333 (333)
T ss_pred HhhC
Confidence 9875
No 20
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=1.1e-99 Score=782.38 Aligned_cols=321 Identities=17% Similarity=0.144 Sum_probs=291.8
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchhhhhc
Q 010485 86 NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (509)
Q Consensus 86 ~~I~vLpGDGIGpEI~~~~~~~l~~~~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~~~~e~~ 165 (509)
++|++|||||||||||+++++++.+.+++|+|+++++|++ |+++|++++++|+++|++||||+++|.+
T Consensus 31 ~~I~vipGDGIGpEV~~~a~~vl~a~~~~i~~~~~~~G~~-----~~~lp~~~l~~~~~~da~L~Gavg~p~~------- 98 (360)
T PLN00123 31 RAVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFERYEVHGD-----MKKVPEEVLESIRRNKVCLKGGLATPVG------- 98 (360)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHhCCCceEEEEEccCCC-----CccCCHHHHHHHHHCCEEEEccccCCCC-------
Confidence 6799999999999999999999977789999999999986 6899999999999999999999999953
Q ss_pred ccccCCCCchhHhhhcCceEEeeccccCCCCCCCCC-CCCCEEEEecccCccccccceeecCCCceeeeecCCCCCCcee
Q 010485 166 LKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPG-WKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVE 244 (509)
Q Consensus 166 L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~-~~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~g~~~~~ 244 (509)
.+++|+|+.||+.||||+|+||+ |.+|++... .++|+|||||||||+|+|.++... +|+
T Consensus 99 --~~~~s~~l~LR~~ldLyaNvRP~--k~~pg~~~~~~~iD~viVREnteG~Y~g~~~~~~-~g~--------------- 158 (360)
T PLN00123 99 --GGVSSLNVQLRKELDLFASLVNC--FNLPGLPTRHENVDIVVIRENTEGEYSGLEHEVV-PGV--------------- 158 (360)
T ss_pred --cCccchHHHHHHHcCCEEEEEEe--ecCCCCCCccCCCCEEEEEeCCCceeccceeecC-CCc---------------
Confidence 23578899999999999999998 667776554 368999999999999999875421 111
Q ss_pred eeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchhHHHHHHHHHHHhhhhccCCCCeeE
Q 010485 245 LDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWY 323 (509)
Q Consensus 245 ~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rk-k~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~~PdI~~ 323 (509)
+.++.+|||+++|||+|+||+||++|+ |+||+|||+|||+.++|+|+++|+||++ +| |+|++
T Consensus 159 ----------~~~~~v~Tr~~~eRIar~AF~~A~~r~rkkVt~v~KaNvl~~t~glf~~~~~eva~-ey------PdV~~ 221 (360)
T PLN00123 159 ----------VESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVAK-KY------PGIKY 221 (360)
T ss_pred ----------eEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCccccchhhHHHHHHHHHHh-hC------CCceE
Confidence 115566899999999999999999985 6799999999999999999999999987 89 99999
Q ss_pred eeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCC--ccc--CCccccccc
Q 010485 324 EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAH--GTV--TRHFRLHQK 398 (509)
Q Consensus 324 e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~H--GSA--Pd~~~~~IA 398 (509)
+|+|||+||||||++|++| ||||+|||||||||++|+|+|||||+||+|||++ .+||||+| ||| || ||
T Consensus 222 ~~~~VDa~~~~Lv~~P~~fDViVt~NlfGDILSDlaa~l~GglGl~pSanig~~--~a~FEpvh~hGSA~~Pd-----IA 294 (360)
T PLN00123 222 NEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGAD--HAVFEQGASAGNVGNEK-----LV 294 (360)
T ss_pred eeeeHHHHHHHHhhCcccCcEEEEcCcccchhhhHHHHhcCCcCccceEeeCCC--ceEEEecccCCCcCCcc-----cc
Confidence 9999999999999999999 9999999999999999999999999999999976 49999977 999 99 99
Q ss_pred CCCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCC-CcCcccccCcchhhhhccccccCHHHHH
Q 010485 399 GQETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSI-SLLNDALLSYSWLILLIDRQFYYLFLLI 477 (509)
Q Consensus 399 Gk~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G-~~T~DLgg~~~~~~~~~~~~~~~T~ef~ 477 (509)
|||+ |||+|+|||++|||+|||+. ++|++|++||.++++ +| .+|+||||+ ++|+||+
T Consensus 295 Gk~i-ANP~a~IlS~amML~~lG~~--------~~A~~I~~AV~~~l~-~G~~~T~DlGG~------------~sT~e~~ 352 (360)
T PLN00123 295 EQKK-ANPVALLLSSAMMLRHLQFP--------SFADRLETAVKRVIA-EGKYRTKDLGGS------------STTQEVV 352 (360)
T ss_pred CCCc-cChHHHHHHHHHHHHHcCCh--------HHHHHHHHHHHHHHH-cCCccCcccCCC------------cCHHHHH
Confidence 9999 99999999999999999974 469999999999999 88 899999997 5999999
Q ss_pred HHHHHHh
Q 010485 478 SKISINK 484 (509)
Q Consensus 478 ~~Ii~~~ 484 (509)
++|+++|
T Consensus 353 ~ai~~~l 359 (360)
T PLN00123 353 DAVIANL 359 (360)
T ss_pred HHHHHhh
Confidence 9999986
No 21
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=100.00 E-value=9.4e-100 Score=783.35 Aligned_cols=335 Identities=18% Similarity=0.107 Sum_probs=292.6
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhcC----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchhh
Q 010485 87 PIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMK 162 (509)
Q Consensus 87 ~I~vLpGDGIGpEI~~~~~~~l~~~----~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~~~~ 162 (509)
+|++||||||||||++++++++.+. +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.....+
T Consensus 1 ~i~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~l~G~v~~p~~~~~~ 80 (349)
T TIGR00169 1 KIAVLPGDGIGPEITAEALKVLKAVAERFGLKFEFEEHLIGGAAIDATGQPLPEETLKACKEADAVLLGAVGGPKWDNLP 80 (349)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHhhcCCceEEEEEeCCHHHHHHHCCCCCHHHHHHHHHCCEEEECcccCCCCCCCC
Confidence 5899999999999999999888532 689999999999999999999999999999999999999999999531100
Q ss_pred hhcccccCCCCchhHhhhcCceEEeeccccCCCCCCCC------C--CCCCEEEEecccCccccccceeecCCCceeeee
Q 010485 163 EFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVP------G--WKKPICIGRHAFGDQYRATDTVIKGPGKLKMVF 234 (509)
Q Consensus 163 e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~------~--~~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~ 234 (509)
.. ...+++ |++|||+||||+|+||++ .+|++.. . .++|+|||||||||+|+|.++.....+
T Consensus 81 -~~-~~~~~~-~~~LR~~ldlyanvRP~r--~~~g~~~~~p~~~~~~~~iD~vivREntEG~Y~g~~~~~~~~~------ 149 (349)
T TIGR00169 81 -RD-QRPEQG-LLKLRKSLDLFANLRPAK--VFPSLEDLSPLKEEIAKGVDFVVVRELTGGIYFGEPKGRFGAG------ 149 (349)
T ss_pred -cc-ccchhh-HHHHHHHcCCeEEEEEee--ccCCCCccCCCcccccCCceEEEEeeccCCeecCCCccccCCC------
Confidence 00 011234 899999999999999984 5555432 1 368999999999999999865321110
Q ss_pred cCCCCCCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchhHHHHHHHHHHHhhhh
Q 010485 235 DPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQ 314 (509)
Q Consensus 235 ~~~~g~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~ 314 (509)
.. +.+.++.+|||+++|||+|+||+||++|+++||+|||+|||| ++|+|+++|+||++ +|
T Consensus 150 -----~~-----------~~a~~~~~~Tr~~~eRI~r~AF~~A~~r~~~Vt~v~KaNvlk-t~glf~~~~~eva~-~y-- 209 (349)
T TIGR00169 150 -----GE-----------GEAWDTEVYTKPEIERIARVAFEMARKRRKKVTSVDKANVLE-SSRLWRKTVEEIAK-EY-- 209 (349)
T ss_pred -----Cc-----------ceEEEEEEeeHHHHHHHHHHHHHHHHHcCCcEEEEECCcccc-hhHHHHHHHHHHHh-hC--
Confidence 00 012255678999999999999999999988999999999999 99999999999987 89
Q ss_pred ccCCCCeeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCCcc
Q 010485 315 KFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHF 393 (509)
Q Consensus 315 ~f~~PdI~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd~~ 393 (509)
|+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ .+||||+||||||
T Consensus 210 ----P~I~~~~~~vDa~~~~Lv~~P~~fDViv~~NlfGDILSDlaa~l~GglGlapSanig~~~-~a~FEp~HGSAPd-- 282 (349)
T TIGR00169 210 ----PDVELEHQYIDNAAMQLVKSPTQFDVVVTGNIFGDILSDEASVIPGSLGMLPSASLGSDG-FGLFEPVHGSAPD-- 282 (349)
T ss_pred ----CCceEEeeeHHHHHHHHHhCccCceEEEEcCcccchhhHHHHHhcCCCCCCceEEECCCC-CEEEECCCCChhH--
Confidence 999999999999999999999999 99999999999999999999999999999999775 6999999999999
Q ss_pred cccccCCCCCcChhHHHHHHHHHHHH-hhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhhhhccccccC
Q 010485 394 RLHQKGQETSTNSIASIFAWTRGLEH-RYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQFYY 472 (509)
Q Consensus 394 ~~~IAGk~i~ANPiA~IlS~amML~h-lG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~~~~~~~~~ 472 (509)
|||||+ |||+|+|||++|||+| +|+ .++|++|++||.++|+ +|.+|+||||+ ++
T Consensus 283 ---iAGk~i-ANP~a~IlS~amML~~~lg~--------~~~a~~i~~Av~~~l~-~g~~T~DlgG~------------~~ 337 (349)
T TIGR00169 283 ---IAGKGI-ANPIAQILSAAMMLRYSFNL--------EEAADAIEAAVKKVLA-EGYRTPDLGSS------------AT 337 (349)
T ss_pred ---hcCCCC-CChHHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHHHH-cCCCccccCCC------------cc
Confidence 999999 9999999999999999 796 4569999999999999 89999999997 48
Q ss_pred HHHHHHHHHHHh
Q 010485 473 LFLLISKISINK 484 (509)
Q Consensus 473 T~ef~~~Ii~~~ 484 (509)
|+||+++|++.|
T Consensus 338 t~e~t~av~~~~ 349 (349)
T TIGR00169 338 TEVGTAEMGEEL 349 (349)
T ss_pred hHHHHHHHHhcC
Confidence 999999999754
No 22
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=3.7e-100 Score=757.48 Aligned_cols=407 Identities=67% Similarity=1.102 Sum_probs=392.0
Q ss_pred ccccceeccccEEEEcCCCcHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCC
Q 010485 77 TGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITP 156 (509)
Q Consensus 77 ~~~~ki~~~~~I~vLpGDGIGpEI~~~~~~~l~~~~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP 156 (509)
...+||+|.+||+.++||+|++.||+.++++|+.|+++++++|||+|.+++|+|+++++.|+.+++++++|++||+++||
T Consensus 10 ~~~~kikv~~pvVemdGDEmTRiIW~~Ik~KLIlPyldldlkyyDLgie~RD~T~DqVTid~A~A~lky~V~iKCATITP 89 (422)
T KOG1526|consen 10 SGMSKIKVANPVVEMDGDEMTRIIWKLIKEKLILPYLDLDLKYYDLGIENRDATNDQVTIDAAEAILKYNVGIKCATITP 89 (422)
T ss_pred chhceeeccCCeEEecccHHHHHHHHHHHhhcccceeeeceeeeecCCcccccccceeeHHHHHHHHHhCceeEEeecCC
Confidence 33679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCCCCCCCCEEEEecccCccccccceeecCCCceeeeecC
Q 010485 157 DETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDP 236 (509)
Q Consensus 157 ~~~~~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~~~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~ 236 (509)
++.|++||+|++||+|||++||++|+++++++||.|+++|+++|+|.+||+|.||..+|+|...++.++++|++++.|.|
T Consensus 90 DEaRv~Ef~LkkMWkSPNGTIRNILgGTVFREpIi~kniPrlVpgW~kPI~IGRHAfgDQYkatD~vv~~~gkl~l~f~~ 169 (422)
T KOG1526|consen 90 DEARVEEFNLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPIIIGRHAFGDQYKATDFVVPGPGKLELVFTP 169 (422)
T ss_pred cHHHHHHhhhHHHhcCCCcchhhhcCceeeccceecCCcccccCCCccceEEeeccccccceeeeEeecCCCeEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchhHHHHHHHHHHHhhhhcc
Q 010485 237 EDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKF 316 (509)
Q Consensus 237 ~~g~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f 316 (509)
.+|.....++|++|+++|++..|+||.++++.+|+.+|+||.++++++++.+|++|||+|||+|++||+||++++||++|
T Consensus 170 ~dg~~~~~~~V~~f~~~G~~~~m~~~dds~~~FAhssf~~Al~kk~pLylsTKNTILKkYDgrFKdiFqeiye~~yk~kf 249 (422)
T KOG1526|consen 170 SDGTQKVTLKVYDFKGSGVAAMMYNTDDSIRGFAHSSFQYALQKKWPLYLSTKNTILKKYDGRFKDIFQEIYEKQYKSKF 249 (422)
T ss_pred CCCCcceeEEEEecCCCceeEEEeeccchhhHHHHHHHHHHHHhcCceeeeccchHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 99988889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEeeehHHHHHHHHhhCCCccEEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCCccccc
Q 010485 317 EEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLH 396 (509)
Q Consensus 317 ~~PdI~~e~~lVDa~amqlVk~P~~FVIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd~~~~~ 396 (509)
++.+|||||+|||+|++|++++.++|||+|+||+||++||++||.+||||||+|..+.|||++.+.|++|||+.+|||+|
T Consensus 250 e~~~IwYEHRLIDDmVAqa~KS~GGfvwAcKNYDGDVqSD~vAQg~GSLGlMTSVLv~pdGKT~EaEAAHGTVtRHyr~h 329 (422)
T KOG1526|consen 250 EALGIWYEHRLIDDMVAQAMKSEGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTRHYRMH 329 (422)
T ss_pred HhhcchhhhhhHHHHHHHHHhcCCceEEEeecCCCchhhhHHHhcccchhhheeEEEcCCCCeeeeeccccchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhhhhccccccCHHHH
Q 010485 397 QKGQETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQFYYLFLL 476 (509)
Q Consensus 397 IAGk~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~~~~~~~~~T~ef 476 (509)
+.|+++|+||||+||+|+..|.|+|++|+ |+.|.+||+.||+||..+++ .|.+|+||+....|. .....++.|.||
T Consensus 330 qkG~eTSTN~IASIFAWtRgl~hR~kLD~-n~~l~~F~~~LE~aci~tve-~G~MTKDLal~i~g~--~~r~~y~~T~eF 405 (422)
T KOG1526|consen 330 QKGQETSTNSIASIFAWTRGLAHRAKLDN-NEALAKFANALEKACIETVE-SGKMTKDLALCIHGK--VERSDYLNTEEF 405 (422)
T ss_pred hcCCCccCcchHHHHHHHHHHHHhhccCC-CHHHHHHHHHHHHHHHHHHH-hccchHhHHHHhcCC--ccccccccHHHH
Confidence 99999999999999999999999999998 99999999999999999999 999999997764431 222346999999
Q ss_pred HHHHHHHhhhh
Q 010485 477 ISKISINKYLE 487 (509)
Q Consensus 477 ~~~Ii~~~~~~ 487 (509)
.|+|.++|...
T Consensus 406 idav~~~L~~~ 416 (422)
T KOG1526|consen 406 IDAVASNLKKK 416 (422)
T ss_pred HHHHHHHHHHH
Confidence 99999999753
No 23
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=4.1e-99 Score=780.40 Aligned_cols=338 Identities=18% Similarity=0.098 Sum_probs=297.6
Q ss_pred cccEEEEcCCCcHHHHHHHHHHHHhcC----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcch
Q 010485 85 QNPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (509)
Q Consensus 85 ~~~I~vLpGDGIGpEI~~~~~~~l~~~----~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~~ 160 (509)
.++|++||||||||||++++++++.+. +++|+|+++++|.++++++|+++|++++++|+++|++||||+++|....
T Consensus 2 ~~~I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gav~~p~~~~ 81 (358)
T PRK00772 2 TYKIAVLPGDGIGPEVMAEAVKVLDAVAEKFGFDFEFEEALVGGAAIDAHGVPLPEETLEACRAADAVLLGAVGGPKWDN 81 (358)
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEecCcHHHHHHHCCCCCHHHHHHHHHCCEEEECccCCCCCCC
Confidence 478999999999999999999888532 7899999999999999999999999999999999999999999995322
Q ss_pred hhhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCCC--C------CCCCEEEEecccCccccccceeecCCCceee
Q 010485 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVP--G------WKKPICIGRHAFGDQYRATDTVIKGPGKLKM 232 (509)
Q Consensus 161 ~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~--~------~~~DivIvREnTeG~Y~g~e~~~~~~g~~e~ 232 (509)
++. . ..+.+| |++||++||||+|+||+ |.+|++.. + .++|+|||||||||+|+|.++... ++.
T Consensus 82 ~~~-~-~~~~~~-~~~LR~~ldlyanvRP~--r~~pg~~~~~plk~~~~~~iD~vivREntEG~Y~g~~~~~~-~~~--- 152 (358)
T PRK00772 82 LPP-D-VRPERG-LLALRKELGLFANLRPA--KLYPGLADASPLKPEIVAGLDILIVRELTGGIYFGEPRGRE-GLG--- 152 (358)
T ss_pred CCc-c-CCChhh-HHHHHHHcCCeEEEeEe--ecCCCCCCcCCCcccccCCccEEEEecccCCeecCCccccc-CCC---
Confidence 110 0 123456 99999999999999998 45555432 1 168999999999999999865421 110
Q ss_pred eecCCCCCCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchhHHHHHHHHHHHhh
Q 010485 233 VFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERW 312 (509)
Q Consensus 233 ~~~~~~g~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY 312 (509)
+ . +.+.+..+|||++++||+|+||+||++|+++||+|||+|||| ++|+|+++|+||++ ||
T Consensus 153 ------~-~-----------~~a~~~~~iTr~~~~Ri~r~Af~~A~~r~~~Vt~v~KaNvl~-~~glf~~~~~eva~-ey 212 (358)
T PRK00772 153 ------G-E-----------ERAFDTMVYTREEIERIARVAFELARKRRKKVTSVDKANVLE-SSRLWREVVTEVAK-EY 212 (358)
T ss_pred ------C-c-----------eeEEEEEEeeHHHHHHHHHHHHHHHHHcCCcEEEEECccccc-cchHHHHHHHHHHh-HC
Confidence 0 0 012256778999999999999999999988999999999999 99999999999987 89
Q ss_pred hhccCCCCeeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCC
Q 010485 313 RQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTR 391 (509)
Q Consensus 313 ~~~f~~PdI~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd 391 (509)
|+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ .+||||+||||||
T Consensus 213 ------p~i~~~~~~vDa~~~~lv~~P~~fDViv~~NlfGDIlSDlaa~l~GglGl~psanig~~~-~a~FEp~HGSApd 285 (358)
T PRK00772 213 ------PDVELSHMYVDNAAMQLVRNPKQFDVIVTENLFGDILSDEAAMLTGSLGMLPSASLGESG-PGLYEPIHGSAPD 285 (358)
T ss_pred ------CCceEEEEeHHHHHHHHhhCcccCeEEeecCcccccccHHHHHhcCCCCCCcceEeCCCC-ceeeecCCCchhh
Confidence 999999999999999999999999 99999999999999999999999999999999876 6999999999999
Q ss_pred cccccccCCCCCcChhHHHHHHHHHHHH-hhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCccc---ccCcchhhhhcc
Q 010485 392 HFRLHQKGQETSTNSIASIFAWTRGLEH-RYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDA---LLSYSWLILLID 467 (509)
Q Consensus 392 ~~~~~IAGk~i~ANPiA~IlS~amML~h-lG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DL---gg~~~~~~~~~~ 467 (509)
|||||+ |||+|+|||++|||+| ||+ .++|++|++||.++++ +|++|+|| ||+
T Consensus 286 -----iAGk~~-aNP~a~Ils~ammL~~~lg~--------~~~a~~i~~Av~~~l~-~g~~T~Dl~~~gg~--------- 341 (358)
T PRK00772 286 -----IAGKGI-ANPIATILSAAMMLRYSLGL--------EEAADAIEAAVEKVLA-QGYRTADIAEGGGK--------- 341 (358)
T ss_pred -----hcCCCC-cCCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHH-cCCcCcccccCCCC---------
Confidence 999999 9999999999999999 996 4569999999999999 89999999 665
Q ss_pred ccccCHHHHHHHHHHHhh
Q 010485 468 RQFYYLFLLISKISINKY 485 (509)
Q Consensus 468 ~~~~~T~ef~~~Ii~~~~ 485 (509)
++|+||+|+|+++|.
T Consensus 342 ---~~T~e~~~av~~~l~ 356 (358)
T PRK00772 342 ---VSTSEMGDAILAALA 356 (358)
T ss_pred ---cCHHHHHHHHHHHhh
Confidence 699999999999984
No 24
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=4.9e-99 Score=776.33 Aligned_cols=330 Identities=15% Similarity=0.113 Sum_probs=290.7
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHhcC---CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchhh
Q 010485 86 NPIVEMDGDEMTRIIWQMIKDKLIFP---YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMK 162 (509)
Q Consensus 86 ~~I~vLpGDGIGpEI~~~~~~~l~~~---~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~~~~ 162 (509)
++|++|||||||||||+++++++.+. +++|+|+++++|+++++++|+++|++|+++|+++|++||||+++|...
T Consensus 5 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~p~~~--- 81 (344)
T PRK03437 5 MKLAVIPGDGIGPEVVAEALKVLDAVAAGGPGVETTEYDLGARRYLRTGETLPDSVLAELRQHDAILLGAIGDPSVP--- 81 (344)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHCCcCCHHHHHHHHHCCEEEEeecCCCCCC---
Confidence 57999999999999999999888533 899999999999999999999999999999999999999999999421
Q ss_pred hhcccccCCCCchhHhhhcCceEEeeccccCCCCCCCCC----CCCCEEEEecccCccccccceeecCCCceeeeecCCC
Q 010485 163 EFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPG----WKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED 238 (509)
Q Consensus 163 e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~----~~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~ 238 (509)
. ...++|++++|||+||||+|+||+ +.+|++.++ .++||+||||||||+|+|.+... .++..
T Consensus 82 ~---~~~~~~~~~~LRk~ldLyaNvRP~--r~~pg~~sp~k~~~~iD~vivREnteG~Y~g~~~~~-~~~~~-------- 147 (344)
T PRK03437 82 S---GVLERGLLLKLRFALDHYVNLRPS--KLYPGVTSPLAGPGDIDFVVVREGTEGPYTGNGGAL-RVGTP-------- 147 (344)
T ss_pred C---CCcccchHHHHHHHcCCeEEEEEe--ecCCCCCCcCCCCCCCCEEEEEECCCccccCCcccc-cCCCc--------
Confidence 0 012567899999999999999998 556655433 36799999999999999986432 11110
Q ss_pred CCCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchhHHHHHHHHHHHhhhhccC
Q 010485 239 GTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFE 317 (509)
Q Consensus 239 g~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rk-k~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~ 317 (509)
. +.+.++.+|||+++|||+|+||+||++|+ ++||+|||+|||+.++|+|+++|+||++ +|
T Consensus 148 --~-----------~~a~~~~~~Tr~~~~RIa~~AF~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva~-~y----- 208 (344)
T PRK03437 148 --H-----------EVATEVSVNTAFGVERVVRDAFERAQKRPRKHLTLVHKTNVLTFAGDLWQRTVDEVAA-EY----- 208 (344)
T ss_pred --c-----------eeEEEEEEecHHHHHHHHHHHHHHHHhCCCCeEEEEECCccccccchHHHHHHHHHHh-hC-----
Confidence 0 01236678999999999999999999995 6799999999999999999999999987 89
Q ss_pred CCCeeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCC-ceeeecCCcccCCcccc
Q 010485 318 EHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAHGTVTRHFRL 395 (509)
Q Consensus 318 ~PdI~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~-~a~FEp~HGSAPd~~~~ 395 (509)
|+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++. ++||||+||||||
T Consensus 209 -pdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pSanig~~g~~~a~FEp~HGSAPd---- 283 (344)
T PRK03437 209 -PDVTVDYQHVDAATIFMVTDPSRFDVIVTDNLFGDIITDLAAAVTGGIGLAASGNINPTGTNPSMFEPVHGSAPD---- 283 (344)
T ss_pred -CCceEeehhHHHHHHHHhcCcccCcEEEEcccchhhhhHHHHHhcCCccccceeeecCCCCcceeEecCCCCchh----
Confidence 999999999999999999999999 999999999999999999999999999999997642 4899999999999
Q ss_pred cccCCCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhhhhccccccCHHH
Q 010485 396 HQKGQETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQFYYLFL 475 (509)
Q Consensus 396 ~IAGk~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~~~~~~~~~T~e 475 (509)
|||||+ |||+|+|||++|||+|||+. +.|++|++||.++++ +| +||. ++|+|
T Consensus 284 -iAGk~i-ANP~a~IlS~amML~~lg~~--------~~a~~I~~Av~~~l~-~g-----~gg~------------~~T~e 335 (344)
T PRK03437 284 -IAGQGI-ADPTAAILSVALLLDHLGEE--------DAAARIEAAVEADLA-ER-----GKMG------------RSTAE 335 (344)
T ss_pred -hcCCCc-cChHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHHHH-hc-----CCCC------------cCHHH
Confidence 999999 99999999999999999974 469999999999999 77 4565 59999
Q ss_pred HHHHHHHHh
Q 010485 476 LISKISINK 484 (509)
Q Consensus 476 f~~~Ii~~~ 484 (509)
|+++|+++|
T Consensus 336 ~~~ai~~~l 344 (344)
T PRK03437 336 VGDRIAARL 344 (344)
T ss_pred HHHHHHhhC
Confidence 999999875
No 25
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=100.00 E-value=1.9e-98 Score=766.55 Aligned_cols=319 Identities=19% Similarity=0.158 Sum_probs=292.4
Q ss_pred EEEEcCCCcHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchhhhhccc
Q 010485 88 IVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLK 167 (509)
Q Consensus 88 I~vLpGDGIGpEI~~~~~~~l~~~~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~~~~e~~L~ 167 (509)
|++|||||||||||+++++++...+++|+|+++++|.+++++||+++|++++++|+++|++||||++||.+
T Consensus 1 i~~ipGDGIGpEv~~~a~~vl~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~Gavg~p~~--------- 71 (322)
T TIGR02088 1 VAVIPGDGIGPEVIEAAIRILNKLGLEIEFIEFEAGDEALKKYGSALPEDTLEEIRKADAILFGAVTTPAN--------- 71 (322)
T ss_pred CEEeCCCCccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHhCCCCCHHHHHHHHHCCEEEECcccCCCC---------
Confidence 68999999999999999999976789999999999999999999999999999999999999999999953
Q ss_pred ccCCCCchhHhhhcCceEEeeccccCCCCCCCCCC--CCCEEEEecccCccccccceeecCCCceeeeecCCCCCCceee
Q 010485 168 SMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW--KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVEL 245 (509)
Q Consensus 168 ~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~~--~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~g~~~~~~ 245 (509)
.+++|+|++|||+||||+|+||+ +.+|++.... ++|+|||||||||+|+|.++.. ++ .
T Consensus 72 ~~~~s~~~~LR~~ldlyanvRP~--r~~~g~~~~~~~~iD~vivREnteG~Y~g~~~~~--~~------------~---- 131 (322)
T TIGR02088 72 PGYKSVIVTLRKELDLYANVRPA--KSLPGIPDLYPNGKDIVIVRENTEGLYAGFEFGF--SD------------R---- 131 (322)
T ss_pred CCccChHHHHHHHcCCEEEEEEe--eccCCCCCCCCCCCCEEEEEeCcCCeeecccccc--Cc------------c----
Confidence 24689999999999999999998 4556654432 6899999999999999986421 10 0
Q ss_pred eeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchhHHHHHHHHHHHhhhhccCCCCeeEee
Q 010485 246 DVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEH 325 (509)
Q Consensus 246 ~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~~PdI~~e~ 325 (509)
+.+..++||+++|||+|+||+||++|++|||++||+||||.++|+|+++|+||++ +| | |+++|
T Consensus 132 ---------a~~~~~~tr~~~eRi~r~AF~~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~-~y------p-v~~~~ 194 (322)
T TIGR02088 132 ---------AIAIRVITREGSERIARFAFNLAKERNRKVTCVHKANVLKGTDGLFREVCREIAK-RY------G-VEYRD 194 (322)
T ss_pred ---------eEEEEEecHHHHHHHHHHHHHHHHHcCCcEEEEeCCcchhhhHHHHHHHHHHHHH-hC------C-eeeee
Confidence 1245568999999999999999999998899999999999999999999999987 89 9 99999
Q ss_pred ehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCCcccccccCCCCCc
Q 010485 326 RLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETST 404 (509)
Q Consensus 326 ~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd~~~~~IAGk~i~A 404 (509)
+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|+|++ .+||||.|||||| |||||+ |
T Consensus 195 ~~vDa~~~~lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~--~a~fep~hGsa~d-----iaG~~~-a 266 (322)
T TIGR02088 195 MYVDSAAMNLVKDPWRFDVIVTTNMFGDILSDLASALAGSLGLAPSANIGDR--KALFEPVHGSAPD-----IAGKGI-A 266 (322)
T ss_pred eeHHHHHHHHhhCCcCceEEEecCcccchhhHHHHhhcCCCCCCceeEEcCC--ceEEecCCCChhH-----hCCCCC-C
Confidence 99999999999999999 9999999999999999999999999999999976 4999999999999 999999 9
Q ss_pred ChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhhhhccccccCHHHHHHHHH
Q 010485 405 NSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQFYYLFLLISKIS 481 (509)
Q Consensus 405 NPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~~~~~~~~~T~ef~~~Ii 481 (509)
||+|+|+|++|||+|+|+. ++|++|++||.++++ +|.+|+||||+ ++|+||+|+|+
T Consensus 267 Np~a~i~A~~~~l~~~g~~--------~~a~~i~~Av~~~l~-~g~~T~DlgG~------------~~T~e~~~av~ 322 (322)
T TIGR02088 267 NPTAAILSVAMMLDYLGEL--------EKGKLVWEAVEYYII-EGKKTPDLGGT------------AKTKEVGDEIA 322 (322)
T ss_pred ChHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHHHH-cCCCCcccCCC------------cCHHHHHHHhC
Confidence 9999999999999999974 469999999999999 89999999987 59999999985
No 26
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-98 Score=746.77 Aligned_cols=327 Identities=19% Similarity=0.206 Sum_probs=300.9
Q ss_pred cccEEEEcCCCcHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchhhhh
Q 010485 85 QNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEF 164 (509)
Q Consensus 85 ~~~I~vLpGDGIGpEI~~~~~~~l~~~~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~~~~e~ 164 (509)
+.+|++||||||||||++++++++.++.++|+|+..|++...--.++..+|++++|.+++++++||||+.||.+
T Consensus 35 ~~~vtLIpGDGIGpEi~~av~kvf~aak~pIewd~~dv~~~~~~~~~~~ip~~~~esl~~nkvgLkGp~~tPi~------ 108 (365)
T KOG0785|consen 35 TITVTLIPGDGIGPEISPAVKKVFEAAKVPIEWDFIDVTPIKGPFGGKAIPDEAVESLRKNKVGLKGPVATPIG------ 108 (365)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHHHhcCCCcceeeeeccccccCCCCccCCHHHHHHHHhhcccccCcccCccc------
Confidence 35789999999999999999999988899999999999775433377899999999999999999999999986
Q ss_pred cccccCCCCchhHhhhcCceEEeeccccCCCCCCCCCC-CCCEEEEecccCccccccceeecCCCceeeeecCCCCCCce
Q 010485 165 GLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPV 243 (509)
Q Consensus 165 ~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~~-~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~g~~~~ 243 (509)
++.+|+|++|||+|+||||+||+ ++++|++..+ ++|+|+|||||||+|+|+||.+ .+|+++
T Consensus 109 ---kgh~S~nl~LRK~f~LyANVRPc--~SieG~Kt~Y~~vD~V~IRENTEgeYsgiEh~v-vpGVvq------------ 170 (365)
T KOG0785|consen 109 ---KGHRSLNLALRKEFGLYANVRPC--KSIEGYKTPYDDVDLVIIRENTEGEYSGIEHQV-VPGVVQ------------ 170 (365)
T ss_pred ---cccccHHHHHHHHhchhccceec--ccccCCcCCCCCceEEEEecCCccccccceeec-cccHHH------------
Confidence 56689999999999999999996 8999998876 5699999999999999999975 355432
Q ss_pred eeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchhHHHHHHHHHHHhhhhccCCCCee
Q 010485 244 ELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIW 322 (509)
Q Consensus 244 ~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rk-k~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~~PdI~ 322 (509)
+++ .+|+.+++||++|||+||++++ ++||++||+|||+.+||+|+++|+|+++ +| |||+
T Consensus 171 siK-------------~IT~~AS~Ria~~AF~yAr~~~R~~vtvvHKaNImr~tDGLFle~cre~a~-~y------~dI~ 230 (365)
T KOG0785|consen 171 SIK-------------LITEAASRRIAEYAFEYARQNGRKRVTVVHKANIMRMTDGLFLECCREVAK-KY------PDIK 230 (365)
T ss_pred HHH-------------HHHHHHHHHHHHHHHHHHHHcCCCceEEEehhhhhhhcchHHHHHHHHHhh-hC------Cccc
Confidence 343 3799999999999999999987 6799999999999999999999999977 89 9999
Q ss_pred EeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCCcccccccCCC
Q 010485 323 YEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQE 401 (509)
Q Consensus 323 ~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd~~~~~IAGk~ 401 (509)
||++|+|+||++|+++|..| |+|+||||||||||+||+|+||||+.||+||| ++ .++|||+|||||| ||||+
T Consensus 231 ~eE~~lDt~~l~lv~~P~~~DVlV~PNLYGDIlSD~~agLvGgLGltPS~NiG-~g-~~~~e~vHGsAPD-----IAGkd 303 (365)
T KOG0785|consen 231 FEEQYLDTCCLKLVRNPSCFDVLVMPNLYGDILSDLCAGLVGGLGLTPSANIG-DG-IVIFEAVHGSAPD-----IAGKD 303 (365)
T ss_pred hhHHHHHHHHHHHhcCchhceEEeccchhHHHHHHHHHHhccCcccCCCcccC-CC-eeeeecccCCCcc-----cccCC
Confidence 99999999999999999999 99999999999999999999999999999999 66 7999999999999 99999
Q ss_pred CCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCC-CcCcccccCcchhhhhccccccCHHHHHHHH
Q 010485 402 TSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSI-SLLNDALLSYSWLILLIDRQFYYLFLLISKI 480 (509)
Q Consensus 402 i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G-~~T~DLgg~~~~~~~~~~~~~~~T~ef~~~I 480 (509)
+ |||+|++||++|||+|+|. .+.|++|+.||.++++ +| ++|+||||+ .+|+||+++|
T Consensus 304 l-ANPtAlllS~vmMLrhm~l--------~~~A~~I~~Av~~ti~-eg~~rT~DLGGk------------a~~seft~aV 361 (365)
T KOG0785|consen 304 L-ANPTALLLSAVMMLRHMGL--------NDQADQIESAVFKTIA-EGKIRTPDLGGK------------ATTSEFTDAV 361 (365)
T ss_pred c-CCcHHHHHHHHHHHHHcCc--------hhHHHHHHHHHHHHHh-ccCccCcccCCC------------ccchHHHHHH
Confidence 9 9999999999999999994 5569999999999999 66 599999998 5999999999
Q ss_pred HHHh
Q 010485 481 SINK 484 (509)
Q Consensus 481 i~~~ 484 (509)
+++|
T Consensus 362 c~~l 365 (365)
T KOG0785|consen 362 CDRL 365 (365)
T ss_pred HhcC
Confidence 9875
No 27
>PRK07362 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=2e-97 Score=778.53 Aligned_cols=360 Identities=18% Similarity=0.090 Sum_probs=296.3
Q ss_pred EEEEcCCCcHHHHHHHHHHHHhc---C----CCCeEEEEEecchHHHhhcCC--CCcHHHHHHHHhcCeeeecCCCCCCc
Q 010485 88 IVEMDGDEMTRIIWQMIKDKLIF---P----YLDLDIKYYDLGILNRDATDD--KVTVESAEATLKYNVAIKCATITPDE 158 (509)
Q Consensus 88 I~vLpGDGIGpEI~~~~~~~l~~---~----~~~i~~~~~~~G~~~~~~tG~--~lp~etleaik~~da~lkg~~~tP~~ 158 (509)
|++|||||||||||++++++|.+ . +++|+|.++++|+++++++|+ ++|++|+++|+++|++||||++||.+
T Consensus 31 I~vIpGDGIGpEI~~aa~kVL~a~~~~~~~~~~~i~~~~~~~G~~a~~~~G~~~~lP~etle~i~~~da~L~Gpi~tP~~ 110 (474)
T PRK07362 31 IPFIRGDGTGVDIWPATQKVLDAAVAKAYGGERKINWFKVYAGDEACDLYGTYQYLPEDTLEAIREYGVAIKGPLTTPIG 110 (474)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCCeEEEEEccCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 99999999999999999988742 1 258999999999999999996 89999999999999999999999953
Q ss_pred chhhhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCCCCC----CCCEEEEecccCccccccceeecCCCceee--
Q 010485 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVIKGPGKLKM-- 232 (509)
Q Consensus 159 ~~~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~~----~~DivIvREnTeG~Y~g~e~~~~~~g~~e~-- 232 (509)
.+++|+|+.|||.||||+|+||+ +.+|++.+++ +.|+|||||||||+|+|+++....+...++
T Consensus 111 ---------~g~~s~~l~LRk~ldLyaNvRPv--r~~pgl~sp~k~~~~iD~vIvRENTEGlY~G~~~~~~~~~~~~~~~ 179 (474)
T PRK07362 111 ---------GGIRSLNVALRQIFDLYSCVRPC--RYYAGTPSPHKNPEKLDVIVYRENTEDIYMGIEWEAGDEIGDKLIK 179 (474)
T ss_pred ---------cCccchHHHHHHHcCCceeeeEe--eccCCCCCcccCCCCCCEEEEEECCCceecccccccccccchhccc
Confidence 34679999999999999999998 4566654432 589999999999999999764211000000
Q ss_pred ----eecCCCCCCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhC---CCCEEEEeCCccccccchhHHHHHH
Q 010485 233 ----VFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSK---KWPLYLSTKNTILKKYDGRFKDIFQ 305 (509)
Q Consensus 233 ----~~~~~~g~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~r---kk~Vt~v~KaNVlk~tdglf~~i~~ 305 (509)
.+.|..+.. - ....+.+-+.+..+|||++++||+|+||+||++| +++||+|||+||||+++|+|++|+.
T Consensus 180 ~~~~~~~~~~~~~---~-~~~~~~~~a~~~k~iTr~g~eRI~r~AFe~A~~r~~~rkkVT~VhKaNVlk~t~glf~~~~~ 255 (474)
T PRK07362 180 HLNEEVIPASPEL---G-KRQIPLGSGIGIKPVSKTGSQRHIRRAIEHALRLPGDKRHVTLVHKGNIMKYTEGAFRDWGY 255 (474)
T ss_pred ccccccccccccc---c-ccccccceeeeeeeccHHHHHHHHHHHHHHHHhcCCCCCeEEEEECCcccccchhHHHHHHH
Confidence 011110000 0 0000111133667899999999999999999998 3679999999999999999999888
Q ss_pred HHHHHhhhhc---------------cC----------------------------------------------CCCeeEe
Q 010485 306 QVYEERWRQK---------------FE----------------------------------------------EHSIWYE 324 (509)
Q Consensus 306 eVa~~eY~~~---------------f~----------------------------------------------~PdI~~e 324 (509)
|||+++|+++ |- .|+|.++
T Consensus 256 evA~~~~~~~~v~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 335 (474)
T PRK07362 256 ELATTEFRDECVTERESWILSNKEKNPNISIEDNARMIEPGYDSLTPEKKAAICAEVKEVLDSIWSSHGNGKWKEKVLVD 335 (474)
T ss_pred HHHHHhhhhhhhhhhhhhhhcccccCccccccccccccccccccccccccccccccccccccchhhccccccCCCcceee
Confidence 9997677332 21 1558889
Q ss_pred eehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCCcccccccCCCCC
Q 010485 325 HRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETS 403 (509)
Q Consensus 325 ~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd~~~~~IAGk~i~ 403 (509)
|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||++ .+||||+|||||| |||||+
T Consensus 336 ~~~vDa~a~~lv~~P~~FDVIVt~NLfGDILSDlaA~lvGglGlaPSANiG~~--~a~FEpvHGSAPd-----IAGk~i- 407 (474)
T PRK07362 336 DRIADSIFQQIQTRPQEYSILATLNLNGDYISDAAAAIVGGLGMAPGANIGDN--AAIFEATHGTAPK-----HAGLDR- 407 (474)
T ss_pred hHHHHHHHHHHHhChhhCCEEEEccccchhhhHHHHHhcCCccccceeeeCCC--ceeeecCCCCchh-----hcCCCC-
Confidence 999999999999999999 9999999999999999999999999999999976 4999999999999 999999
Q ss_pred cChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhhhhccccccCHHHHHHHHHHH
Q 010485 404 TNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQFYYLFLLISKISIN 483 (509)
Q Consensus 404 ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~~~~~~~~~T~ef~~~Ii~~ 483 (509)
|||+|+|||++|||+|||+. ++|++|++||.++|+ +|.+|+||||.+... ...+||+||+++|+++
T Consensus 408 ANP~A~ILS~aMML~~LG~~--------~~A~~I~~AV~~vl~-~g~~T~Dlg~~~~~~-----~~~~sT~E~~~aIi~~ 473 (474)
T PRK07362 408 INPGSVILSGVMMLEYLGWQ--------EAADLITKGLSAAIA-NKQVTYDLARLMEPP-----VDPLSCSEFAEAIISH 473 (474)
T ss_pred cCcHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHHHH-cCCcccCCCCccccC-----CCCcCHHHHHHHHHhc
Confidence 99999999999999999974 469999999999999 999999998631100 0126999999999986
Q ss_pred h
Q 010485 484 K 484 (509)
Q Consensus 484 ~ 484 (509)
+
T Consensus 474 ~ 474 (474)
T PRK07362 474 F 474 (474)
T ss_pred C
Confidence 4
No 28
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=3.5e-95 Score=740.98 Aligned_cols=363 Identities=32% Similarity=0.381 Sum_probs=331.1
Q ss_pred EEEEcCCCcHHHHHHHHHHHH----hcCC---CCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcch
Q 010485 88 IVEMDGDEMTRIIWQMIKDKL----IFPY---LDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (509)
Q Consensus 88 I~vLpGDGIGpEI~~~~~~~l----~~~~---~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~~ 160 (509)
|.+|.|||||+||++++.+++ +.++ .+|+|.|+++|.+++++||+++|+||+++|+++.|++|||++||.+
T Consensus 21 iP~IegDgiG~eit~~~~kvi~aav~k~Y~g~~~I~w~e~~aG~ka~d~tg~~lp~etl~aikky~VaIKgpl~TPvg-- 98 (407)
T COG0538 21 IPFIEGDGIGDEITRAIWKVIDAAVEKAYGGERKIEWKEVDAGEKARDKTGDQLPIETLEAIKKYGVAIKGPLTTPVG-- 98 (407)
T ss_pred cceEecCCCcHHHHHHHHHHHHHHHHhhcCCcceeEEEEEecchHHHHhhcCcCCHHHHHHHHHhCEEeeccccCccc--
Confidence 589999999999999887544 4456 9999999999999999999999999999999999999999999953
Q ss_pred hhhhcccccCCCCchhHhhhcCceEEeecccc-CCCCCCCCC-CCCCEEEEecccCccccccceeecCCCceeeeecCCC
Q 010485 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILC-QNIPRIVPG-WKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED 238 (509)
Q Consensus 161 ~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~-k~lp~l~~~-~~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~ 238 (509)
+||+|||++|||.||||+|+|||++ +++|+++++ |++||||+||||||+|.|+||...+++..++.+...+
T Consensus 99 -------~g~rSlNvtlRq~Ldly~~~rPv~y~~gvPspvk~pe~~dmVIfRenteDiYagiE~~~~s~~a~kl~~fl~~ 171 (407)
T COG0538 99 -------KGWRSLNVTLRQILDLYVFRRPVRYFPGVPSPVKRPEKVDMVIFRENTEDIYAGIEWKAGSPEALKLIFFLED 171 (407)
T ss_pred -------ccccCchHHHHHHcCceEeeeeEEecCCCCCCCCCcccCCeEEEeccccchhheeeeccCCcchhhhhhhhhc
Confidence 8999999999999999999999998 599988886 8999999999999999999999988888887765554
Q ss_pred CCCceeeeeeccC-CCceeeeeccChHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchhHHHHHHHHHHHh-----
Q 010485 239 GTGPVELDVYNFK-GPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEER----- 311 (509)
Q Consensus 239 g~~~~~~~v~~~~-~~~v~~~~~~Tr~~ieRIar~AFe~A~~rk-k~Vt~v~KaNVlk~tdglf~~i~~eVa~~e----- 311 (509)
+ ..+++++|+ ++|++..++ ++++++|++|.||+||.+++ ++||+|||.||||+|+|.|++|++|||+++
T Consensus 172 e---~~~~~i~~pe~~GIgikp~-s~~~s~Rlvr~ai~yAi~~~r~~VtlvhKgnImK~teGaFkdw~yeva~~~ef~~~ 247 (407)
T COG0538 172 E---MGVKKIRFPEDSGIGIKPI-SKEGSIRLVRAAIEYAIENKRKSVTLVHKGNIMKFTEGAFKDWGYEVAEEEEFGDE 247 (407)
T ss_pred c---cccceEecCCCCceEEEec-CchhhHHHHHHHHHHHHHcCCceEEEEecCeeeecccchHHHHHHHHHhhhccccc
Confidence 3 236778897 899999995 78889999999999999998 789999999999999999999999999975
Q ss_pred ---hhhccCCCC----eeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeee
Q 010485 312 ---WRQKFEEHS----IWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAE 383 (509)
Q Consensus 312 ---Y~~~f~~Pd----I~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FE 383 (509)
|+.+|+..+ |.++|+|+|+|.+|++++|+.| ||+|+||+||++||.+|+++|||||+||+||| ++ +++||
T Consensus 248 ~~~~~~~~~~~~~~gkI~~~driaD~mlqQil~r~~eydViA~~NlnGDy~SDa~Aa~vGglGi~pgani~-~~-~~~fE 325 (407)
T COG0538 248 VVTGKEKFELKGPKGKIVYKDRIADDMLQQILLRPGEYDVIATKNLNGDYISDALAAQVGGLGLAPGANIG-DG-TAEFE 325 (407)
T ss_pred ccccchhhhccCcCceEEEehhhHHHHHHHHhcCCCCceEEEeccCCccHHHHHHHHhcCCccccccceec-Cc-eEEEE
Confidence 677888888 9999999999999999999999 99999999999999999999999999999999 55 79999
Q ss_pred cCCcccCCcccccccCCCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhh
Q 010485 384 AAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLI 463 (509)
Q Consensus 384 p~HGSAPd~~~~~IAGk~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~ 463 (509)
|+|||||+ +|||+. +||+|+||||.|||+|+||+|. |+.|++||.++++ +|++|+||+.-+.+
T Consensus 326 A~HGTapk-----~aG~~~-~Np~a~Ils~~~ml~~~Gw~ea--------a~li~~a~~~ti~-~~~vT~DlArl~~~-- 388 (407)
T COG0538 326 ATHGTAPK-----YAGKDS-TNPIASILSGTMMLRHRGWLEA--------ADLIEKAVEDTIE-SGKVTYDLARLMGG-- 388 (407)
T ss_pred eccCcccc-----ccCcCC-CCcHHHHHHHHHHHHHhhhhhh--------HHHHHHHHHHHHH-hCceeHHHHHhhCC--
Confidence 99999999 789986 9999999999999999999764 8899999999999 99999999865432
Q ss_pred hhccccccCHHHHHHHHHHHhh
Q 010485 464 LLIDRQFYYLFLLISKISINKY 485 (509)
Q Consensus 464 ~~~~~~~~~T~ef~~~Ii~~~~ 485 (509)
..+.++|+||+|+|+++|.
T Consensus 389 ---~~~~v~tsEF~d~ii~~l~ 407 (407)
T COG0538 389 ---AKRYLSTSEFADAIIENLK 407 (407)
T ss_pred ---CccceeHHHHHHHHHHhcC
Confidence 1236899999999999873
No 29
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=100.00 E-value=9.2e-96 Score=755.57 Aligned_cols=331 Identities=23% Similarity=0.201 Sum_probs=289.1
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhcC----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchhh
Q 010485 87 PIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMK 162 (509)
Q Consensus 87 ~I~vLpGDGIGpEI~~~~~~~l~~~----~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~~~~ 162 (509)
+|++||||||||||++++++++.+. +++|+|+++++|.+++++||+++|++++++|+++|++||||+++|...
T Consensus 1 kI~vipGDGIGpEv~~~~~~Vl~a~~~~~~~~~e~~~~~~G~~~~~~~g~~lp~et~~~i~~~daiL~Gai~~p~~~--- 77 (348)
T PF00180_consen 1 KIAVIPGDGIGPEVMPAALRVLEAAAEKYGLDFEFEEFDIGGEAYDKTGEPLPDETLEAIKRADAILKGAIGTPKPP--- 77 (348)
T ss_dssp EEEEEEESTTHHHHHHHHHHHHHHHHHHHTEEEEEEEEETSHHHHHHHSSSSHHHHHHHHHHCSEEEEEE--CGGSS---
T ss_pred CcceeccCcchHHHHHHHHHHHHHHHhhcccccccccccchhhhhhhccccccHHHHHHHhhcCcEEEccccccccc---
Confidence 5899999999999999998877443 589999999999999999999999999999999999999999999731
Q ss_pred hhcccccCCCCc--hhHhhhcCceEEeeccccCCCCCC--CCC------CCCCEEEEecccCccccccceeecCCCceee
Q 010485 163 EFGLKSMWRSPN--GTIRNILNGTVFREPILCQNIPRI--VPG------WKKPICIGRHAFGDQYRATDTVIKGPGKLKM 232 (509)
Q Consensus 163 e~~L~~~~~S~n--~~LRk~LdLyanvRPi~~k~lp~l--~~~------~~~DivIvREnTeG~Y~g~e~~~~~~g~~e~ 232 (509)
+.++.+ ++||+.||||+|+||++ .+|++ ... .++||+||||||||+|+|.++.... +.
T Consensus 78 ------~~~~~~~l~~lR~~ldl~anvRp~~--~~~~~~~~~~~~~~~~~~iDivivREnteG~Y~g~~~~~~~-~~--- 145 (348)
T PF00180_consen 78 ------GIRSENGLLKLRKELDLYANVRPVR--SFPGPGVPSPLKDEIPEGIDIVIVRENTEGLYSGIEHEIGD-GG--- 145 (348)
T ss_dssp ------SHSHHHHHHHHHHHTTHHEEEEEEE--EECETTGGSSBSHHHHTTSEEEEEEESSSGGGGEEEEEECS-EE---
T ss_pred ------ccccHHHHHHHHHhcccceeeEEEE--EeccccccccccccccCcceEEEecccccCcccCCCCceee-cc---
Confidence 122333 79999999999999984 45322 111 2489999999999999999987531 10
Q ss_pred eecCCCCCCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhC-CCCEEEEeCCccccccchhHHHHHHHHHHHh
Q 010485 233 VFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYEER 311 (509)
Q Consensus 233 ~~~~~~g~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~r-kk~Vt~v~KaNVlk~tdglf~~i~~eVa~~e 311 (509)
. ++..+.++.+|||+++|||+|+||+||++| +++||+|||+|||+.++ +|+++|+||++++
T Consensus 146 --~---------------~~~~a~~~~~~t~~~~eRi~r~AF~~A~~r~~k~Vt~v~KaNvl~~~~-lf~~~~~eva~~~ 207 (348)
T PF00180_consen 146 --T---------------PDEVAIDTKVITREGIERIARFAFEYARKRGRKKVTVVHKANVLKSTD-LFREVFQEVAKQE 207 (348)
T ss_dssp --E---------------GSSEEEEEEEEEHHHHHHHHHHHHHHHHHTTTSEEEEEESTTTSTTHH-HHHHHHHHHHHHT
T ss_pred --C---------------CCceEEEeeccccchhhHHHHHHHHHHHHhCCceEEEEeccchhHHHH-HHHHHHHHHHHhh
Confidence 0 111233667899999999999999999999 68999999999999888 9999999999878
Q ss_pred hhhccCCCCeeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccC
Q 010485 312 WRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVT 390 (509)
Q Consensus 312 Y~~~f~~PdI~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAP 390 (509)
| |+|+++|++||+|+|+||++|++| ||||+|||||||||++|+++|||||+||+|+|+++ .++|||+|||||
T Consensus 208 y------p~I~~~~~~vD~~~~~Lv~~P~~fdViv~~Nl~GDIlSDl~a~l~G~lGl~psanig~~~-~a~fEp~HGSAp 280 (348)
T PF00180_consen 208 Y------PDIEVEHMLVDAAAMQLVKNPEQFDVIVTPNLFGDILSDLAAGLVGGLGLAPSANIGPDG-HAMFEPVHGSAP 280 (348)
T ss_dssp H------TTSEEEEEEHHHHHHHHHHSGGGESEEEEEHHHHHHHHHHHHHHHTSGGGEEEEEEETSS-EEEEEESSTTTG
T ss_pred c------ceeEeeeeechhhhheeecCCcceeEEeecchhHHHHHHHhhhcCCChhhhhhhccCccc-cccccccccccc
Confidence 9 999999999999999999999999 99999999999999999999999999999999655 799999999999
Q ss_pred CcccccccCCCCCcChhHHHHHHHHHHHH-hhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhhhhcccc
Q 010485 391 RHFRLHQKGQETSTNSIASIFAWTRGLEH-RYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQ 469 (509)
Q Consensus 391 d~~~~~IAGk~i~ANPiA~IlS~amML~h-lG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~~~~~~ 469 (509)
| |||||+ |||+|+|||++|||+| +|+ .+.|++|++||.++++ +|++|+||||+. .+
T Consensus 281 d-----iaGk~~-aNP~a~Ils~a~mL~~~lg~--------~~~a~~i~~Av~~~l~-~g~~T~Dlgg~~--------~~ 337 (348)
T PF00180_consen 281 D-----IAGKGI-ANPIAMILSAAMMLEHSLGL--------PEAADAIEKAVEKVLE-EGIRTPDLGGSA--------TT 337 (348)
T ss_dssp G-----GTTSSH-S-THHHHHHHHHHHHHHHTH--------HHHHHHHHHHHHHHHH-TTEEBGGGHTTT--------CE
T ss_pred c-----ccCCcc-cCcHHHHHHHHHHHHHhcCC--------hHHHHHHHHHHHHHHH-cCCCCccccCCC--------CC
Confidence 9 999999 9999999999999999 885 4569999999999999 899999999983 33
Q ss_pred ccCHHHHHHHH
Q 010485 470 FYYLFLLISKI 480 (509)
Q Consensus 470 ~~~T~ef~~~I 480 (509)
.++|+||+|+|
T Consensus 338 ~~~T~e~~daV 348 (348)
T PF00180_consen 338 AVSTEEFGDAV 348 (348)
T ss_dssp EBHHHHHHHHH
T ss_pred CCCHHHHHhhC
Confidence 47999999987
No 30
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=4.5e-84 Score=650.64 Aligned_cols=331 Identities=18% Similarity=0.160 Sum_probs=301.0
Q ss_pred cceeccccEEEEcCCCcHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcc
Q 010485 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (509)
Q Consensus 80 ~ki~~~~~I~vLpGDGIGpEI~~~~~~~l~~~~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~ 159 (509)
.|...+++|++|||||||||++.++.+++.+..+|++|+++++++. .+.++..++|.+++|++++|+|||.+.||+.
T Consensus 37 ~kygg~~tVTlipGdGIGpe~~~~V~~v~~a~~~PV~fE~i~v~~~--~~~~~~~~~e~v~Si~rNkValkG~i~t~~~- 113 (375)
T KOG0784|consen 37 AKYGGRHTVTLIPGDGIGPELTNAVREVFSAAHAPVEFEEIEVSGS--NKESSEDLDEAVESIKRNKVALKGNIETPDL- 113 (375)
T ss_pred cccCCcceEEEeCCCCcCHHHHHHHHHHHHhcCCCeeEEEEEccCC--ccccchhHHHHHHHHHhcceeEeecccCCCC-
Confidence 3777789999999999999999999999988899999999999872 2344557999999999999999999999942
Q ss_pred hhhhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCCCCC-CCCEEEEecccCccccccceeecCCCceeeeecCCC
Q 010485 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED 238 (509)
Q Consensus 160 ~~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~~-~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~ 238 (509)
+++..|.|+.||++||||||+-- |+++||++.++ ++||+||||||||+|+|.||+. .||++|
T Consensus 114 -------~g~~~s~n~~LR~~LDLyanvv~--~~slpG~~tRh~~vDiviIRENTEGEYs~LEHE~-VpGVVE------- 176 (375)
T KOG0784|consen 114 -------PGGAKSLNVKLRKELDLYANVVH--CKSLPGVKTRHENVDIVIIRENTEGEYSGLEHES-VPGVVE------- 176 (375)
T ss_pred -------ccchhhhHHHHHHhhhhhhheee--eeccCCcccccCCccEEEEecCCccccccccccc-Ccchhh-------
Confidence 24568999999999999999874 69999999886 6799999999999999999986 477654
Q ss_pred CCCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchhHHHHHHHHHHHhhhhccC
Q 010485 239 GTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFE 317 (509)
Q Consensus 239 g~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rk-k~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~ 317 (509)
+++| +|++.+||||||||+||.+.+ ||||+||||||||..||+|+++|+||++ .|
T Consensus 177 -----sLKV-------------vT~~kseRIaryAF~yA~k~gRKkVTaVHKAnimKL~DGlFle~~~eva~-~Y----- 232 (375)
T KOG0784|consen 177 -----SLKV-------------VTRFKSERIARYAFEYAKKNGRKKVTAVHKANIMKLGDGLFLESCQEVAK-KY----- 232 (375)
T ss_pred -----eeee-------------ehhhhhHHHHHHHHHHHHHhCCceEEEEeccCceecchhhHHHHHHHHHh-cC-----
Confidence 5655 699999999999999999987 7899999999999999999999999998 59
Q ss_pred CCCeeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecC--CcccCCccc
Q 010485 318 EHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAA--HGTVTRHFR 394 (509)
Q Consensus 318 ~PdI~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~--HGSAPd~~~ 394 (509)
|+|+++.|+||++|||||.+|+|| |+|+|||||.|+|.+||+|+||.|+.|++|+|++ +++|||. |+. .+
T Consensus 233 -p~I~~e~miVDN~~MQlvs~P~qFDvmv~pnlYgniisNiaaGlvGG~Glv~G~n~G~~--yAVFE~g~r~~~-~~--- 305 (375)
T KOG0784|consen 233 -PDITFEEMIVDNACMQLVSRPQQFDVMVMPNLYGNIISNIAAGLVGGAGLVSGANYGDD--YAVFEPGARHTG-TS--- 305 (375)
T ss_pred -CCccHHHhhHHHhHHHhhcCchheeeEechHHHHHHHHHHHHHhcCCCCcccccccccc--eEEecccccccc-hh---
Confidence 999999999999999999999999 9999999999999999999999999999999987 4999994 555 34
Q ss_pred ccccCCCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCC-CcCcccccCcchhhhhccccccCH
Q 010485 395 LHQKGQETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSI-SLLNDALLSYSWLILLIDRQFYYL 473 (509)
Q Consensus 395 ~~IAGk~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G-~~T~DLgg~~~~~~~~~~~~~~~T 473 (509)
++||++ |||+|+|||.+|||+||| ++.+|++|+.||.+++. +| ++|+||||+ -||
T Consensus 306 --~~g~~~-aNPtA~llss~~MLrHL~--------l~~~Ad~i~~Av~~vi~-egk~rT~DlGG~------------~Tt 361 (375)
T KOG0784|consen 306 --IAGKNI-ANPTAMLLSSVDMLRHLG--------LPSHADRISTAVKRVID-EGKIRTKDLGGQ------------STT 361 (375)
T ss_pred --hhcccc-cCcHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHHHh-cCcccccccCCC------------cch
Confidence 999999 999999999999999999 46789999999999999 77 799999998 399
Q ss_pred HHHHHHHHHHhh
Q 010485 474 FLLISKISINKY 485 (509)
Q Consensus 474 ~ef~~~Ii~~~~ 485 (509)
++|+++||.+|.
T Consensus 362 ~dvi~avI~~l~ 373 (375)
T KOG0784|consen 362 QDVIDAVIANLR 373 (375)
T ss_pred HHHHHHHHHHhc
Confidence 999999999985
No 31
>KOG0786 consensus 3-isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-78 Score=591.30 Aligned_cols=318 Identities=19% Similarity=0.146 Sum_probs=280.0
Q ss_pred ccccEEEEcCCCcHHHHHHHHHHHHhcC----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcc
Q 010485 84 VQNPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (509)
Q Consensus 84 ~~~~I~vLpGDGIGpEI~~~~~~~l~~~----~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~ 159 (509)
-+|+|++||||||||||+..++.++.+. +++|+|++..+|++++|.+|-++|+||+++.|++|+++.|+++.|.+.
T Consensus 3 ~~~~i~llpgd~ig~ev~s~a~~vlq~~~~l~~vefdf~~~~iggaald~~gvplpeet~~aak~sdavllgaigg~kw~ 82 (363)
T KOG0786|consen 3 KRYNITLLPGDGIGPEVISVAKNVLQKAGSLEGVEFDFEEMPIGGAALDLVGVPLPEETLTAAKKSDAVLLGAIGGYKWD 82 (363)
T ss_pred CcceEEEcCCCCcCHHHHHHHHHHHHHhccccceeeccccCcccccchhccCCCCCHHHHhhhhhcceeEeecccCcccC
Confidence 3588999999999999999999888543 799999999999999999999999999999999999999999988653
Q ss_pred h---hhhhcccccCCCCchhHhhhcCceEEeecccc-CCCC---CCCCC--CCCCEEEEecccCccccccceeecCCCce
Q 010485 160 R---MKEFGLKSMWRSPNGTIRNILNGTVFREPILC-QNIP---RIVPG--WKKPICIGRHAFGDQYRATDTVIKGPGKL 230 (509)
Q Consensus 160 ~---~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~-k~lp---~l~~~--~~~DivIvREnTeG~Y~g~e~~~~~~g~~ 230 (509)
. .||.+| +.||+.|.+|+|+||+.+ +.+- .+++. .+.|++||||+|+|+|+|......
T Consensus 83 ~~~lrpe~gl--------l~ir~~lkvfanlrp~~~~~qlvd~s~lk~e~aeg~d~mvvrel~ggiyfge~r~en----- 149 (363)
T KOG0786|consen 83 KNHLRPEMGL--------LKIRRDLKVFANLRPATVLPQLVDASTLKKEVAEGVDMMVVRELTGGIYFGEPRNEN----- 149 (363)
T ss_pred cCCcChhhhH--------HHHHHHHHHHhcCCcchhhHhhhccccccHHHhcCcceEEeeeecCceeecCcccCC-----
Confidence 1 133333 689999999999999743 2221 22332 257999999999999999764321
Q ss_pred eeeecCCCCCCceeeeeeccCCCcee-eeeccChHHHHHHHHHHHHHHHhCC--CCEEEEeCCccccccchhHHHHHHHH
Q 010485 231 KMVFDPEDGTGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKK--WPLYLSTKNTILKKYDGRFKDIFQQV 307 (509)
Q Consensus 231 e~~~~~~~g~~~~~~~v~~~~~~~v~-~~~~~Tr~~ieRIar~AFe~A~~rk--k~Vt~v~KaNVlk~tdglf~~i~~eV 307 (509)
| ++++ ++..|+-+++.||+|.||+.|++|+ .+||++||+|||. ++.+||..+.+.
T Consensus 150 --------g-------------~gva~dte~Ya~~Ev~RIaR~Aa~~A~~~~pp~pl~slDKANVLa-aSrLWRKtV~~~ 207 (363)
T KOG0786|consen 150 --------G-------------EGVAFDTEIYAAHEVDRIARVAAETARKRRPPGPLCSLDKANVLA-ASRLWRKTVTKA 207 (363)
T ss_pred --------C-------------cceeeccccccHHHHHHHHHHHHHHHHhhCCCCCccccchhhHHH-HHHHHHHHHHHH
Confidence 1 1222 6777999999999999999999998 7899999999996 889999998888
Q ss_pred HHHhhhhccCCCCeeEeeehHHHHHHHHhhCCCcc--EEEeCCcchhhHhhHhhhhcCCcccccccccC-----CCCCce
Q 010485 308 YEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY--VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLS-----SDGKTL 380 (509)
Q Consensus 308 a~~eY~~~f~~PdI~~e~~lVDa~amqlVk~P~~F--VIVt~NLfGDILSDlaA~l~GsLGlapSanig-----~d~~~a 380 (509)
.++|| |++++.|+|||+++||||++|.+| +|||.|+|||||||+++.+.|||||+|||+++ ..+ ++
T Consensus 208 ~k~Ey------P~l~l~hqliDsAAM~Lvk~P~~lng~ivT~NiFGDIiSDEASvIpGSlGlLPSASLs~v~~~es~-~g 280 (363)
T KOG0786|consen 208 LKSEY------PDLELSHQLIDSAAMQLVKDPKQLNGTIVTNNIFGDIISDEASVIPGSLGLLPSASLSGVVSEESG-PG 280 (363)
T ss_pred HHhhC------CCcchhhhhhhHHHHHHhcCchhcCceEEeccchhhhhccccccccCccccccchhhcCCcccccC-Cc
Confidence 78899 999999999999999999999999 99999999999999999999999999999998 334 68
Q ss_pred eeecCCcccCCcccccccCCCCCcChhHHHHHHHHHHHH-hhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccC
Q 010485 381 EAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEH-RYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLS 458 (509)
Q Consensus 381 ~FEp~HGSAPd~~~~~IAGk~i~ANPiA~IlS~amML~h-lG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~ 458 (509)
+|||+|||||| |+||++ +||+|+|||++|||.| |++ +++|++||.||.++|. .|.+|.||||.
T Consensus 281 L~EPiHGSAPD-----iagk~k-vNPlaTILSAamlLkygLn~--------pkeakaIEdAV~kvLd-~G~rTgDlgg~ 344 (363)
T KOG0786|consen 281 LFEPIHGSAPD-----IAGKDK-VNPLATILSAAMLLKYGLNE--------PKEAKAIEDAVVKVLD-KGFRTGDLGGP 344 (363)
T ss_pred ccccCCCCCCC-----cCCCCc-cChHHHHHHHHHHHHhcCCC--------hhhHHHHHHHHHHHHh-ccccccccCCC
Confidence 99999999999 999998 9999999999999999 664 5679999999999999 99999999998
No 32
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=96.73 E-value=0.026 Score=62.75 Aligned_cols=182 Identities=15% Similarity=0.131 Sum_probs=114.8
Q ss_pred ceeeeeccChHHHHHHHHHHHHHHHhCCCC-EEEEeCCccccccchhHHHHHHHHHHHhhhhccCCCCeeEeee-hHHHH
Q 010485 254 GIALAMYNVDESIRAFAESSMSLAFSKKWP-LYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR-LIDDM 331 (509)
Q Consensus 254 ~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~-Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~~PdI~~e~~-lVDa~ 331 (509)
+++-.+-.-+.-|+..++.|.+.|+..+.+ |.-.|+.-. -| .++...| + .|.......++.+.-+ -+|+|
T Consensus 450 DIwRmcq~KD~pI~DWVkLAV~Rar~tg~paiFWLD~~RA---HD---a~lI~kV-~-~yL~~hdt~gldi~Im~P~~A~ 521 (735)
T PF03971_consen 450 DIWRMCQTKDAPIRDWVKLAVNRARATGTPAIFWLDENRA---HD---AELIKKV-E-KYLKDHDTSGLDIRIMSPVEAT 521 (735)
T ss_dssp -EEEEEEE-HHHHHHHHHHHHHHHHHHT--EEEE--TTSH---HH---HHHHHHH-H-HHHTTS--TT--EEEE-HHHHH
T ss_pred cchhhhcccCchHHHHHHHHHHHHHhhCCCeEEecCCCCc---cH---HHHHHHH-H-HHHHhcCCCCCceEeeCHHHHH
Confidence 455334345778999999999999998876 555555422 23 3455566 3 6776666667777776 45666
Q ss_pred HHHHhh-CCCcc-EEEeCCcchhhHhhHhhhhc-----CCcccccccccCCCCCceeeec-CCcccCCcccccccCCCCC
Q 010485 332 VAYAIK-SEGGY-VWACKNYDGDVQSDLLAQGF-----GSLGLMTSVLLSSDGKTLEAEA-AHGTVTRHFRLHQKGQETS 403 (509)
Q Consensus 332 amqlVk-~P~~F-VIVt~NLfGDILSDlaA~l~-----GsLGlapSanig~d~~~a~FEp-~HGSAPd~~~~~IAGk~i~ 403 (509)
-.-|-+ +-+.- +=||.|..=|+|+||.--|= --|-+.|=-| .| ++||. +.||||.|..+.+.---..
T Consensus 522 ~~sler~r~G~dTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLm~---GG--GLFETGAGGSAPKHVqQf~eEnhLR 596 (735)
T PF03971_consen 522 RFSLERIRAGKDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMN---GG--GLFETGAGGSAPKHVQQFVEENHLR 596 (735)
T ss_dssp HHHHHHHHTT---EEEE-HHHHHHHHHHHHHHHHS-STTSEEEEEBTT---S---EEEES-SS---HHHHHHHCCCS---
T ss_pred HHHHHHHHcCCCeEEeechHHHhhhcchhhhhhhccchhhhhhhhccc---CC--ceeccCCCCCccHHHHHHHHcCccc
Confidence 554433 34445 88999999999999975541 1122222222 22 79998 6789999999876655556
Q ss_pred cChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCC
Q 010485 404 TNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSIS 450 (509)
Q Consensus 404 ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~ 450 (509)
=+.++-+|+.+--|+|++...+ |+.-.-.|+.|.+|+.+.|+ ++.
T Consensus 597 WDSLGEFlALa~Sle~l~~~~~-n~ka~vLa~tLd~At~~~L~-n~k 641 (735)
T PF03971_consen 597 WDSLGEFLALAVSLEHLAQKTG-NPKAKVLADTLDAATGKFLE-NNK 641 (735)
T ss_dssp --THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHHHH-TT-
T ss_pred ccchhhHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHh-CCC
Confidence 7899999999999999998776 77878899999999999998 553
No 33
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=96.27 E-value=0.066 Score=59.77 Aligned_cols=174 Identities=15% Similarity=0.143 Sum_probs=123.2
Q ss_pred ChHHHHHHHHHHHHHHHhCCCC-EEEEeCCccccccchhHHHHHHHHHHHhhhhccCCCCeeEeee-hHHHHHHHHhh-C
Q 010485 262 VDESIRAFAESSMSLAFSKKWP-LYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR-LIDDMVAYAIK-S 338 (509)
Q Consensus 262 Tr~~ieRIar~AFe~A~~rkk~-Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~~PdI~~e~~-lVDa~amqlVk-~ 338 (509)
-+.-|+..++.|.+.|+..+.+ |.-.|+.-. -| .++...| + .|.......++.++-+ .+++|-.-|=+ +
T Consensus 462 KD~pI~DWVkLAV~Rar~sg~pavFWLD~~Ra---HD---a~lI~kV-~-~yL~~hdt~gldi~Im~p~~A~~~slerir 533 (741)
T TIGR00178 462 KDAPIQDWVKLAVTRARATGTPAVFWLDPARA---HD---AQLIKKV-E-TYLKDHDTEGLDIQILSPVEATRFSLARIR 533 (741)
T ss_pred cCchHHHHHHHHHHHHHhcCCCeEEEeCCCch---hH---HHHHHHH-H-HHHHhcCCCCCceEeeCHHHHHHHHHHHHH
Confidence 4667999999999999998866 555554422 23 2344455 2 5655555567777766 45665544433 3
Q ss_pred CCcc-EEEeCCcchhhHhhHhhhhcCCccccccccc---CC--CCCceeeec-CCcccCCcccccccCCCCCcChhHHHH
Q 010485 339 EGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLL---SS--DGKTLEAEA-AHGTVTRHFRLHQKGQETSTNSIASIF 411 (509)
Q Consensus 339 P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSani---g~--d~~~a~FEp-~HGSAPd~~~~~IAGk~i~ANPiA~Il 411 (509)
-+.- +=||.|..=|+|+||.--| -|-+||-. =| .| -++||. +.||||.|..+.+.---..=+.++-+|
T Consensus 534 ~G~dTISVTGNVLRDYLTDLFPIL----ElGTSAKMLSIVPLm~G-GGLFETGAGGSAPKHVqQf~eEnhLRWDSLGEFl 608 (741)
T TIGR00178 534 RGEDTISVTGNVLRDYLTDLFPIL----ELGTSAKMLSIVPLMAG-GGLFETGAGGSAPKHVQQFLEENHLRWDSLGEFL 608 (741)
T ss_pred cCCCeEEEechhHHhhhcchhhhh----hhccchhhhhhhhcccC-CceecCCCCCCccHHHHHHHHcCcccccchhhHH
Confidence 4444 8899999999999997544 23334321 01 12 279998 678999999987665555678999999
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCC
Q 010485 412 AWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSIS 450 (509)
Q Consensus 412 S~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~ 450 (509)
+.+--|+|++...+ |..-.-.|+.|.+|+.+.|+ ++.
T Consensus 609 ALa~Sle~la~~~~-n~ka~vLa~tLd~At~k~L~-n~k 645 (741)
T TIGR00178 609 ALAASLEHLGNATG-NPKALVLADTLDAATGKLLD-NNK 645 (741)
T ss_pred HHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHh-CCC
Confidence 99999999998776 77777789999999999998 543
No 34
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion]
Probab=93.18 E-value=1.4 Score=48.67 Aligned_cols=182 Identities=16% Similarity=0.114 Sum_probs=117.8
Q ss_pred eeeeeccChHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchhHHHHHHHHHHHhhhhccCCCCeeEeee-hHHHHHH
Q 010485 255 IALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR-LIDDMVA 333 (509)
Q Consensus 255 v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~~PdI~~e~~-lVDa~am 333 (509)
++-.+.....-|+..++.|.+.||..+-++.+---.+ +..| ++....| + .|...-...+..+.-+ .+.+|-.
T Consensus 457 iwR~cq~kdapi~dWVkLaV~RarlS~~pavFWLDp~--Rahd---~~li~kV-~-~yLkdhdt~GldI~Ilsp~ea~~~ 529 (744)
T COG2838 457 IWRMCQVKDAPIRDWVKLAVTRARLSGMPAVFWLDPY--RAHD---KELIKKV-E-AYLKDHDTNGLDIQILSPVEAMRY 529 (744)
T ss_pred HHHHHhcccchHHHHHHHHHHHHhhcCCceEEEeCcC--ccch---HHHHHHH-H-HHhhhcCCCCcceEEecHHHHHHH
Confidence 3333445677899999999999998887644422111 1122 2333444 3 4543333344444433 4555544
Q ss_pred HHhh-CCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccC---C--CCCceeeec-CCcccCCcccccccCCCCCcC
Q 010485 334 YAIK-SEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLS---S--DGKTLEAEA-AHGTVTRHFRLHQKGQETSTN 405 (509)
Q Consensus 334 qlVk-~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig---~--d~~~a~FEp-~HGSAPd~~~~~IAGk~i~AN 405 (509)
-|-+ +-+.- +=||.|..-|+|+||.--| -|-+||-.= | .| -+|||. +.||||.|..+...-.-..=+
T Consensus 530 sl~rl~~G~DtIsvTGNvLRDYlTDLFPIl----ELGTSAKMLSiVPlmaG-GgmfETGAGGSAPKhVqQ~~eENhLRWD 604 (744)
T COG2838 530 SLERLRRGEDTISVTGNVLRDYLTDLFPIL----ELGTSAKMLSIVPLMAG-GGMFETGAGGSAPKHVQQLVEENHLRWD 604 (744)
T ss_pred HHHHHHcCCceeEecchHHHHHHhhhhhHh----hcccccchheeeeeccC-CceeecCCCCCCcHHHHHHHHhcccchh
Confidence 4433 33444 7799999999999997554 233343221 0 12 279998 578999999876544444568
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCC
Q 010485 406 SIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSI 449 (509)
Q Consensus 406 PiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G 449 (509)
.++-+|+.+--|+|+|-.-+ |..-+-.|+.|..|..+.|.++.
T Consensus 605 SLGEFLALa~sle~~~~k~g-n~kAkvLa~~LD~AtgklLdn~K 647 (744)
T COG2838 605 SLGEFLALAASLEHLGNKTG-NAKAKVLAKALDAATGKLLDNNK 647 (744)
T ss_pred hHHHHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHHHHHhcCC
Confidence 89999999999999987665 66667788999999999998333
No 35
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents 4-hydroxythreonine-4-phosphate dehydrogenase (PdxA, 1.1.1.262 from EC). PdxA takes part in vitamin B6 biosynthesis, forming pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate.; GO: 0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity, 0051287 NAD binding, 0008615 pyridoxine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1YXO_A 1PS6_A 1PS7_C 1PTM_B 1R8K_B 2HI1_A 3LXY_A 3TSN_B.
Probab=92.78 E-value=0.082 Score=54.90 Aligned_cols=135 Identities=18% Similarity=0.079 Sum_probs=67.9
Q ss_pred ccChHHHHHHHHHHHHHHHh-CC--CCEEEEeCCccccccchhHH-H----HHHHHHHHhhhhccCCCCeeEeeeh-HHH
Q 010485 260 YNVDESIRAFAESSMSLAFS-KK--WPLYLSTKNTILKKYDGRFK-D----IFQQVYEERWRQKFEEHSIWYEHRL-IDD 330 (509)
Q Consensus 260 ~~Tr~~ieRIar~AFe~A~~-rk--k~Vt~v~KaNVlk~tdglf~-~----i~~eVa~~eY~~~f~~PdI~~e~~l-VDa 330 (509)
.+|.+.+.+.++...+.-++ -+ ++-..|-==|==.-..|+|= | |.-.|.+ -+ +.+|.+.-=+ -|.
T Consensus 151 ~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHaGe~G~~G~EE~~~I~PAI~~--~~----~~gi~v~GP~paDt 224 (298)
T PF04166_consen 151 LITKERILEKIRLLHKSLKRDFGIENPRIAVAGLNPHAGEGGLFGREEIEIIIPAIEE--AR----AEGIDVFGPYPADT 224 (298)
T ss_dssp H--HHHHHHHHHHHHHHHHHTTT-SS-EEEEE-SSGGGGTTTTTBSHHHHTHHHHHHH--HH----HTTHEEEEEE-HHH
T ss_pred hcCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCcHhHHHHHHHHHHH--HH----hCCCceECCCccHH
Confidence 46888888888877665544 22 44444443454433456662 2 2222211 11 1566655433 344
Q ss_pred HHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCC-ceeeecCCcccCCcccccccCCCCCcChhH
Q 010485 331 MVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAHGTVTRHFRLHQKGQETSTNSIA 408 (509)
Q Consensus 331 ~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~-~a~FEp~HGSAPd~~~~~IAGk~i~ANPiA 408 (509)
+-.+- .-+.| ++|+ ||=| .+--=+=.|+.--+.|+.- |. ..--=|.||||.| |||||+ |||.+
T Consensus 225 ~F~~~--~~~~fD~vva--MYHD----QGlip~K~l~f~~gVnvTl-GLP~iRTS~DHGTAfD-----IAGkg~-A~~~s 289 (298)
T PF04166_consen 225 VFGKA--NRGKFDAVVA--MYHD----QGLIPFKLLGFDEGVNVTL-GLPIIRTSPDHGTAFD-----IAGKGI-ADPSS 289 (298)
T ss_dssp HTSHH--HHTT-SEEEE--SSHH----HHHHHHHHHCTTTSEEEEE-SSSSEEEEESS-S-CC-----GTTTTT-S-THH
T ss_pred hhhcc--hhccCCEEEE--eecc----cCccceeecccccceEEec-CCCeeeecCCCCchhh-----hhCCCC-CChHH
Confidence 33333 34566 6665 3433 3222223333444566531 11 2455689999999 999998 99999
Q ss_pred HHHHHHH
Q 010485 409 SIFAWTR 415 (509)
Q Consensus 409 ~IlS~am 415 (509)
|+-+.-+
T Consensus 290 ~~~Ai~~ 296 (298)
T PF04166_consen 290 MIEAIKL 296 (298)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9877654
No 36
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=91.64 E-value=0.13 Score=54.27 Aligned_cols=140 Identities=16% Similarity=0.062 Sum_probs=77.1
Q ss_pred ccChHHHHHHHHHHHHHHHhCC--CCEEEEeCCccccccchhH-HHHHHHH---HHHhhhhccCCCCeeEe-eehHHHHH
Q 010485 260 YNVDESIRAFAESSMSLAFSKK--WPLYLSTKNTILKKYDGRF-KDIFQQV---YEERWRQKFEEHSIWYE-HRLIDDMV 332 (509)
Q Consensus 260 ~~Tr~~ieRIar~AFe~A~~rk--k~Vt~v~KaNVlk~tdglf-~~i~~eV---a~~eY~~~f~~PdI~~e-~~lVDa~a 332 (509)
.+|.+.+.+.++.+.+.-++.+ ++-..|-==|==.-..|+| +|--+.+ -+ +.++ .++..+ -.=-|.+-
T Consensus 178 ~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~gLNPHAGE~G~~G~EE~~iI~PAI~-~~~~----~G~~v~GP~paDt~F 252 (332)
T PRK00232 178 AITPERLEEVIRILHADLRRKGIAEPRIAVCGLNPHAGEGGHFGREEIDIIIPALE-ELRA----EGINLVGPLPADTLF 252 (332)
T ss_pred HhCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeeCCCCCCCCCCCHHHHHHHHHHHH-HHHh----CCCCcCCCCCchhhc
Confidence 4789999998888877555334 3322232234333245777 4322222 11 2221 233332 12224433
Q ss_pred HHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCC-ceeeecCCcccCCcccccccCCCCCcChhHHH
Q 010485 333 AYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAHGTVTRHFRLHQKGQETSTNSIASI 410 (509)
Q Consensus 333 mqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~-~a~FEp~HGSAPd~~~~~IAGk~i~ANPiA~I 410 (509)
.+..+ +.| ++|+. |=| .+--=+=.|++--+.|+.- |. ..--=|-||||.| |||||+ |||.+++
T Consensus 253 ~~~~~--~~~D~vvaM--YHD----QGliP~K~l~F~~gVNvTl-GLPiiRTS~DHGTAfD-----IAGkg~-A~~~S~~ 317 (332)
T PRK00232 253 QPAYL--GDADAVLAM--YHD----QGLPVLKYLGFGRGVNITL-GLPFIRTSVDHGTALD-----LAGKGI-ADVGSFI 317 (332)
T ss_pred ccccc--CCCCEEEEC--ccc----ccchhheecccCcceEEec-CCCeeEeCCCCcchhh-----hhcCCC-CCHHHHH
Confidence 33332 467 66663 322 3323334455556777642 21 2344678999999 999998 9999998
Q ss_pred HHHHHHHHH
Q 010485 411 FAWTRGLEH 419 (509)
Q Consensus 411 lS~amML~h 419 (509)
-+.-+..+.
T Consensus 318 ~Ai~lA~~~ 326 (332)
T PRK00232 318 TALNLAIRM 326 (332)
T ss_pred HHHHHHHHH
Confidence 888776544
No 37
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=91.48 E-value=0.14 Score=53.81 Aligned_cols=139 Identities=14% Similarity=0.055 Sum_probs=75.5
Q ss_pred ccChHHHHHHHHHHHHHHHhCC--CCEEEEeCCccccccchhH-HHHHHHHH--HHhhhhccCCCCeeEe-eehHHHHHH
Q 010485 260 YNVDESIRAFAESSMSLAFSKK--WPLYLSTKNTILKKYDGRF-KDIFQQVY--EERWRQKFEEHSIWYE-HRLIDDMVA 333 (509)
Q Consensus 260 ~~Tr~~ieRIar~AFe~A~~rk--k~Vt~v~KaNVlk~tdglf-~~i~~eVa--~~eY~~~f~~PdI~~e-~~lVDa~am 333 (509)
.+|.+.+.+.++.+.+.-++-+ ++=..|-==|==.-..|+| +|-.+.+. -++.++ .++..+ -.=-|.+-.
T Consensus 177 ~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~gLNPHAGE~G~~G~EE~~iI~PAi~~~~~----~G~~v~GP~paDt~F~ 252 (326)
T PRK03371 177 TLNTARVETVIGIADTFLKRVGYVKPRIAVAGVNPHAGENGLFGDEEIRIVTPAIEAMRA----KGMDVYGPCPPDTVFL 252 (326)
T ss_pred HhCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCCCCCCcHHHHHHHHHHHHHHHH----CCCcccCCCCchhhcc
Confidence 4789988888888766554323 3312222234333345788 44333332 113322 233322 122244333
Q ss_pred HHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCC-ceeeecCCcccCCcccccccCCCCCcChhHHHH
Q 010485 334 YAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAHGTVTRHFRLHQKGQETSTNSIASIF 411 (509)
Q Consensus 334 qlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~-~a~FEp~HGSAPd~~~~~IAGk~i~ANPiA~Il 411 (509)
+-.+ +.| ++||. |=| .+--=+=.+|+--+.|+.- |. ..--=|.||||.| |||||+ |||.+|+-
T Consensus 253 ~~~~--~~~D~vvaM--YHD----QGliP~K~l~F~~gVNvTl-GLP~iRTS~DHGTAfD-----IAGkG~-A~~~S~~~ 317 (326)
T PRK03371 253 QAYE--GQYDMVVAM--YHD----QGHIPLKLLGFYDGVNITA-GLPFIRTSADHGTAFD-----IAWTGK-AKSESMAV 317 (326)
T ss_pred cccc--cCCCEEEEc--ccc----ccchhheecccccceEEec-CCCeeEecCCCCchhh-----hhcCCc-CCHHHHHH
Confidence 3222 568 66663 332 3333344555556777642 21 2344678999999 999998 99999988
Q ss_pred HHHHHH
Q 010485 412 AWTRGL 417 (509)
Q Consensus 412 S~amML 417 (509)
+.-+..
T Consensus 318 Ai~lA~ 323 (326)
T PRK03371 318 SIKLAM 323 (326)
T ss_pred HHHHHH
Confidence 776654
No 38
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=91.20 E-value=0.15 Score=53.74 Aligned_cols=141 Identities=16% Similarity=0.121 Sum_probs=78.1
Q ss_pred ccChHHHHHHHHHHHHHHHhCC--CCEEEEeCCccccccchhH-HHHHHHHH--HHhhhhccCCCCeeEe-eehHHHHHH
Q 010485 260 YNVDESIRAFAESSMSLAFSKK--WPLYLSTKNTILKKYDGRF-KDIFQQVY--EERWRQKFEEHSIWYE-HRLIDDMVA 333 (509)
Q Consensus 260 ~~Tr~~ieRIar~AFe~A~~rk--k~Vt~v~KaNVlk~tdglf-~~i~~eVa--~~eY~~~f~~PdI~~e-~~lVDa~am 333 (509)
.+|.+.+.+.++.+.+.-+.-+ ++=..|-==|==.-..|+| +|--+.+. -++.++ .++.++ -.=-|.+-.
T Consensus 178 ~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PAI~~~~~----~g~~v~GP~paDt~F~ 253 (332)
T PRK03743 178 YVTKERVLDYIQRCTKALEKLGIKNPKIAVAGLNPHSGEHGLFGDEEVDEIIPAVEAAQE----MGINVEGPVPADSVFH 253 (332)
T ss_pred HhCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCCCCCCcHHHHHHHHHHHHHHHH----CCCcccCCCCchhhcc
Confidence 4799999999988888665333 3311222234333345777 43222221 112222 333333 122244333
Q ss_pred HHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCC-ceeeecCCcccCCcccccccCCCCCcChhHHHH
Q 010485 334 YAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAHGTVTRHFRLHQKGQETSTNSIASIF 411 (509)
Q Consensus 334 qlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~-~a~FEp~HGSAPd~~~~~IAGk~i~ANPiA~Il 411 (509)
+..+ +.| ++||. |=| .+--=+=.+|+--+.|+.- |. ..--=|-||||.| |||||+ |||.+++-
T Consensus 254 ~~~~--~~~D~vvaM--YHD----QGliP~K~l~F~~gVNvTl-GLP~iRTS~DHGTAfD-----IAGkg~-A~~~S~~~ 318 (332)
T PRK03743 254 LALQ--GRYDAVLSL--YHD----QGHIATKTLDFERTIAITN-GLPFLRTSVDHGTAFD-----IAGTGK-ASSVSMEE 318 (332)
T ss_pred cccc--cCCCEEEEc--ccc----cCChhheecccCCceEEec-CCCeeEeCCCCcchhh-----hhcCCC-CCHHHHHH
Confidence 3332 457 66663 332 3333344455556777642 21 2344688999999 999998 99999998
Q ss_pred HHHHHHHH
Q 010485 412 AWTRGLEH 419 (509)
Q Consensus 412 S~amML~h 419 (509)
+.-+..+.
T Consensus 319 Ai~lA~~~ 326 (332)
T PRK03743 319 AILLAAKY 326 (332)
T ss_pred HHHHHHHH
Confidence 88776654
No 39
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=91.08 E-value=0.16 Score=53.54 Aligned_cols=141 Identities=11% Similarity=-0.044 Sum_probs=78.8
Q ss_pred ccChHHHHHHHHHHHHHHHhC-C--CCEEEEeCCccccccchhH-HHHHHHHH--HHhhhhccCCCCeeEe-eehHHHHH
Q 010485 260 YNVDESIRAFAESSMSLAFSK-K--WPLYLSTKNTILKKYDGRF-KDIFQQVY--EERWRQKFEEHSIWYE-HRLIDDMV 332 (509)
Q Consensus 260 ~~Tr~~ieRIar~AFe~A~~r-k--k~Vt~v~KaNVlk~tdglf-~~i~~eVa--~~eY~~~f~~PdI~~e-~~lVDa~a 332 (509)
.+|.+.+.+.++.+.+.-+++ + ++=..|-==|==.-..|+| +|-.+.+. -++.++ .++.++ -.=-|.+-
T Consensus 173 ~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PAi~~~~~----~Gi~v~GP~paDt~F 248 (329)
T PRK01909 173 ALTIDGLVETLAIIDRDLRRDFGLAAPRILVTGLNPHAGENGYLGREEIDVIEPALARARA----AGIDARGPYPADTLF 248 (329)
T ss_pred HhCHHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCCCCCCcHHHHHHHHHHHHHHHH----CCCCccCCCCchhhc
Confidence 479999999999888765532 3 3312222234333345777 44322221 112222 233322 22235444
Q ss_pred HHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCC-ceeeecCCcccCCcccccccCCCCCcChhHHH
Q 010485 333 AYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAHGTVTRHFRLHQKGQETSTNSIASI 410 (509)
Q Consensus 333 mqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~-~a~FEp~HGSAPd~~~~~IAGk~i~ANPiA~I 410 (509)
.+..+ +.| ++||. |=| .+---+=.||+--+.|+.- |. ..--=|-||||.| |||||+ |||.+|+
T Consensus 249 ~~~~~--~~~D~vvaM--YHD----QGliP~K~l~F~~gVNvTl-GLP~iRTSvDHGTAfD-----IAGkg~-A~~~S~~ 313 (329)
T PRK01909 249 QPRYL--EDADCVLAM--FHD----QGLPVLKYATFGEGINVTL-GLPIIRTSVDHGTALD-----LAGTGR-ADPGSMI 313 (329)
T ss_pred ccccc--cCCCEEEEc--ccc----ccchhheecccCcceEEec-CCCeeEeCCCCcchhh-----hhcCCC-CCHHHHH
Confidence 44333 457 66663 333 3333344555666777642 21 2344678999999 999998 9999998
Q ss_pred HHHHHHHHH
Q 010485 411 FAWTRGLEH 419 (509)
Q Consensus 411 lS~amML~h 419 (509)
-+.-+..+.
T Consensus 314 ~Ai~lA~~~ 322 (329)
T PRK01909 314 AAIDTAVTM 322 (329)
T ss_pred HHHHHHHHH
Confidence 887766544
No 40
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=91.06 E-value=0.16 Score=53.01 Aligned_cols=138 Identities=10% Similarity=-0.055 Sum_probs=72.0
Q ss_pred ccChHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchhH-HHHHHHHH--HHhhhhccCCCCeeEe--eehHHHHHHH
Q 010485 260 YNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRF-KDIFQQVY--EERWRQKFEEHSIWYE--HRLIDDMVAY 334 (509)
Q Consensus 260 ~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNVlk~tdglf-~~i~~eVa--~~eY~~~f~~PdI~~e--~~lVDa~amq 334 (509)
.+|.+.+.+-++...+. +++ -++ .|-==|==.-..|+| +|-. .+. -++.+++ .++..+ -.=-|.+-.+
T Consensus 158 ~it~~~i~~~i~~~~~~-l~~-PrI-aV~gLNPHAGE~G~~G~EE~-iI~PAi~~~~~~---~g~~~~~GP~paDt~F~~ 230 (307)
T PRK03946 158 LIKVKKLVKFLLDFYKS-TKF-KKI-GVLGLNPHAGDNGVIGGEEE-EIKKAIKKANQF---LGFEIFFGPLVPDSAFTP 230 (307)
T ss_pred HhCHHHHHHHHHHHHHH-hcC-CCE-EEEeeCCCCCCCCCCCcchH-HHHHHHHHHHHh---cCCCcccCCcCchhhccc
Confidence 46888888877776653 332 122 222123222234666 3321 221 1122100 133333 2333444333
Q ss_pred HhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCC-ceeeecCCcccCCcccccccCCC-CCcChhHHHH
Q 010485 335 AIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAHGTVTRHFRLHQKGQE-TSTNSIASIF 411 (509)
Q Consensus 335 lVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~-~a~FEp~HGSAPd~~~~~IAGk~-i~ANPiA~Il 411 (509)
-.+ +.| ++||. |=| .+--=+=.+++--+.|+.- |. ..--=|.||||.| ||||| + |||.+|+-
T Consensus 231 ~~~--~~~D~vlaM--YHD----QGlip~K~l~F~~gVnvTl-GLP~iRTSpDHGTAfD-----IAGkg~~-A~~~S~~~ 295 (307)
T PRK03946 231 NKR--KKFNYYVAM--YHD----QGLAPLKALYFDESINVSL-NLPILRTSVDHGTAFD-----IAYKNAK-ANTKSYLN 295 (307)
T ss_pred ccc--cCCCEEEEC--ccc----cCchhheeeccCcceEEec-CCCEeEecCCCCchhh-----hcCCCCc-CCHHHHHH
Confidence 222 567 77663 333 3222334455556677642 21 2344688999999 99999 9 99999988
Q ss_pred HHHHHHHH
Q 010485 412 AWTRGLEH 419 (509)
Q Consensus 412 S~amML~h 419 (509)
+.-+..+.
T Consensus 296 Ai~lA~~~ 303 (307)
T PRK03946 296 AIKYAINL 303 (307)
T ss_pred HHHHHHHH
Confidence 87765543
No 41
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=90.78 E-value=0.17 Score=53.35 Aligned_cols=140 Identities=18% Similarity=0.078 Sum_probs=75.5
Q ss_pred ccChHHHHHHHHHHHHHHHh-CC--CC-EEEEeCCccccccchhH-HHHHHHHH--HHhhhhccCCCCeeEe-eehHHHH
Q 010485 260 YNVDESIRAFAESSMSLAFS-KK--WP-LYLSTKNTILKKYDGRF-KDIFQQVY--EERWRQKFEEHSIWYE-HRLIDDM 331 (509)
Q Consensus 260 ~~Tr~~ieRIar~AFe~A~~-rk--k~-Vt~v~KaNVlk~tdglf-~~i~~eVa--~~eY~~~f~~PdI~~e-~~lVDa~ 331 (509)
.+|.+.+.+.++.+.+.-++ -+ ++ +- |-==|==.-..|+| +|--+.+. -++.++ .++..+ -.=-|.+
T Consensus 182 ~it~e~i~~~i~l~~~~l~~~~gi~~PrIa-V~GLNPHAGE~G~~G~EE~~iI~PAI~~~~~----~Gi~v~GP~paDt~ 256 (336)
T PRK05312 182 ALTPELIVATARITAADLRRRFGIASPRLA-VAGLNPHAGEGGALGREDIDIIAPAIEQLRA----EGIDARGPLPADTM 256 (336)
T ss_pred HhCHHHHHHHHHHHHHHHHHHcCCCCCCEE-EEeeCCCCCCCCCCcHHHHHHHHHHHHHHHH----CCCCccCCCCchhh
Confidence 47899999999988876553 23 23 32 22234333245777 43222221 112222 222221 1122433
Q ss_pred HHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCC-ceeeecCCcccCCcccccccCCCCCcChhHH
Q 010485 332 VAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAHGTVTRHFRLHQKGQETSTNSIAS 409 (509)
Q Consensus 332 amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~-~a~FEp~HGSAPd~~~~~IAGk~i~ANPiA~ 409 (509)
-.+-.+ +.| ++|+. |=| .+---+=.+|+--+.|+.- |. ..--=|-||||.| |||||+ |||.++
T Consensus 257 F~~~~~--~~~D~vvaM--YHD----QGliP~K~l~F~~gVNvTl-GLP~iRTSvDHGTAfD-----IAGkg~-A~~~S~ 321 (336)
T PRK05312 257 FHAAAR--ATYDAAICM--YHD----QALIPIKTLDFDGGVNVTL-GLPFIRTSPDHGTAFD-----IAGKGI-ARPDSL 321 (336)
T ss_pred cccccc--cCCCEEEEc--ccc----cCChhheecccCcceEEec-CCCeeEeCCCCcchhh-----hhcCCC-CCHHHH
Confidence 333222 457 66663 333 3333334455556677642 21 2344578999999 999998 999999
Q ss_pred HHHHHHHHHH
Q 010485 410 IFAWTRGLEH 419 (509)
Q Consensus 410 IlS~amML~h 419 (509)
+-+.-+..+.
T Consensus 322 ~~Ai~lA~~~ 331 (336)
T PRK05312 322 IAALRLAAQM 331 (336)
T ss_pred HHHHHHHHHH
Confidence 8887776544
No 42
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=90.77 E-value=0.17 Score=53.14 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=34.8
Q ss_pred CcccccccccCCCCCceeeecCCcccCCcccccccCCCCCcChhHHHHHHHHHHH
Q 010485 364 SLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLE 418 (509)
Q Consensus 364 sLGlapSanig~d~~~a~FEp~HGSAPd~~~~~IAGk~i~ANPiA~IlS~amML~ 418 (509)
-+|+--|.|+.-.=-..---|-||||.| |||||| |||.+++-+..+.-+
T Consensus 276 ~l~Fd~~VNvtlGLPfiRTS~DHGTAfD-----iAgkGi-A~~~S~~~Ai~lA~~ 324 (332)
T COG1995 276 YLGFDRGVNVTLGLPFIRTSVDHGTAFD-----IAGKGI-ADPGSLIAAIKLAAK 324 (332)
T ss_pred hhccccceEEecCCCeeeecCCccchhh-----hhcCCc-CCchHHHHHHHHHHH
Confidence 3455567777522112345688999999 999999 999999877665443
No 43
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=90.69 E-value=0.18 Score=53.41 Aligned_cols=145 Identities=14% Similarity=0.012 Sum_probs=79.2
Q ss_pred ccChHHHHHHHHHHHHHHHh-CC--CCEEEEeCCccccccchhH-HHHHHHH--HHHhhhhccCCCCeeEee-ehHHHHH
Q 010485 260 YNVDESIRAFAESSMSLAFS-KK--WPLYLSTKNTILKKYDGRF-KDIFQQV--YEERWRQKFEEHSIWYEH-RLIDDMV 332 (509)
Q Consensus 260 ~~Tr~~ieRIar~AFe~A~~-rk--k~Vt~v~KaNVlk~tdglf-~~i~~eV--a~~eY~~~f~~PdI~~e~-~lVDa~a 332 (509)
.+|.+.+.+.++.+.+.-++ -+ ++=..|-==|==.-..|+| +|--+.+ |-++.+++- +++.++- .=-|.+-
T Consensus 180 ~it~~~I~~~i~~~~~~l~~~~gi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PAIe~~r~~g--~g~~v~GP~paDt~F 257 (345)
T PRK02746 180 TLTPELITSKLDLLIDFLQRDFGIEKPRIAIAGLNPHAGEQGQLGTEEKDWLIPWLESWRQKN--PDIQLLGPIPPDTCW 257 (345)
T ss_pred HhCHHHHHHHHHHHHHHHHHHcCCCCCcEEEEeeCCCCCCCCCCcHHHHHHHHHHHHHHHhcC--CCceeeCCCCchhhc
Confidence 46888888888877664442 22 3322232234333345777 3322222 111333221 2344432 2235554
Q ss_pred HHHhhC------CCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCC-ceeeecCCcccCCcccccccCCCCCc
Q 010485 333 AYAIKS------EGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAHGTVTRHFRLHQKGQETST 404 (509)
Q Consensus 333 mqlVk~------P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~-~a~FEp~HGSAPd~~~~~IAGk~i~A 404 (509)
.+..+. .+.| ++||. |=| .+--=+=.|++--+.|+.- |. ..--=|-||||.| |||||+ |
T Consensus 258 ~~~~~~~~~~~~~~~~D~vvaM--YHD----QGliP~K~l~F~~gVNvTl-GLP~iRTS~DHGTAfD-----IAGkg~-A 324 (345)
T PRK02746 258 VSPAQAWYGKGVAEAPDGYLAL--YHD----QGLIPVKLMAFDRAVNTTI-GLPFIRTSPDHGTAFD-----IAGKGI-A 324 (345)
T ss_pred cccccccccccccCCCCEEEEC--ccc----CCChhheeeccCcceEEec-CCCeeEeCCCCcchhh-----hhcCCC-C
Confidence 444431 2568 77773 333 3333344455556777642 21 2344678999999 999998 9
Q ss_pred ChhHHHHHHHHHHHH
Q 010485 405 NSIASIFAWTRGLEH 419 (509)
Q Consensus 405 NPiA~IlS~amML~h 419 (509)
||.+|+-+.-+..+.
T Consensus 325 ~~~S~~~Ai~lA~~l 339 (345)
T PRK02746 325 RPQSMKAAIKLAWEL 339 (345)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999998887766543
No 44
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=90.45 E-value=0.2 Score=52.62 Aligned_cols=139 Identities=14% Similarity=0.021 Sum_probs=73.6
Q ss_pred ccChHHHHHHHHHHHHHHHhC-C--CCEEEEeCCccccccchhH-HHHHHHHH--HHhhhhccCCCCeeEe-eehHHHHH
Q 010485 260 YNVDESIRAFAESSMSLAFSK-K--WPLYLSTKNTILKKYDGRF-KDIFQQVY--EERWRQKFEEHSIWYE-HRLIDDMV 332 (509)
Q Consensus 260 ~~Tr~~ieRIar~AFe~A~~r-k--k~Vt~v~KaNVlk~tdglf-~~i~~eVa--~~eY~~~f~~PdI~~e-~~lVDa~a 332 (509)
.+|.+.+.+-++.+.+.-++. + ++=..|-==|==.-..|+| +|--+.+. -++.++ .++.++ -.=-|.+-
T Consensus 170 ~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHAGE~G~~G~EE~~iI~PAI~~~~~----~G~~v~GP~paDt~F 245 (320)
T TIGR00557 170 ALTPELLVEKLRILHADLRRDFGIARPRIAVAGLNPHAGEGGHLGREEIDIIIPALEALRA----EGIDLIGPLPADTLF 245 (320)
T ss_pred HhCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHHH----CCCcccCCCCchhhc
Confidence 378999999888887766532 3 3312222234333245777 33222221 112222 223222 11223333
Q ss_pred HHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCC-ceeeecCCcccCCcccccccCCCCCcChhHHH
Q 010485 333 AYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAHGTVTRHFRLHQKGQETSTNSIASI 410 (509)
Q Consensus 333 mqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~-~a~FEp~HGSAPd~~~~~IAGk~i~ANPiA~I 410 (509)
.+-. -+.| ++||. |=| .+-.=+=.||+--+.|+.- |. ..--=|.||||.| |||||+ |||.+++
T Consensus 246 ~~~~--~~~~D~vvaM--YHD----QGliP~K~l~F~~gVNvTl-GLPiiRTS~DHGTAfD-----IAGkg~-A~~~S~~ 310 (320)
T TIGR00557 246 HPAA--LAKYDAVLAM--YHD----QGLIPLKYLGFDEGVNVTL-GLPFIRTSPDHGTAFD-----IAGKGK-ADPGSLI 310 (320)
T ss_pred cccc--ccCCCEEEEC--ccc----ccchhheecccCcceEEec-CCCeeEeCCCCcchhh-----hhcCCC-CCHHHHH
Confidence 2222 2467 77663 333 3333334455555677642 21 2344678999999 999998 9999998
Q ss_pred HHHHHHH
Q 010485 411 FAWTRGL 417 (509)
Q Consensus 411 lS~amML 417 (509)
-+.-+..
T Consensus 311 ~Ai~~A~ 317 (320)
T TIGR00557 311 AAIKLAI 317 (320)
T ss_pred HHHHHHH
Confidence 7766543
No 45
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=86.86 E-value=0.36 Score=52.26 Aligned_cols=21 Identities=10% Similarity=0.079 Sum_probs=18.9
Q ss_pred CCCEEEEeccc-Ccccccccee
Q 010485 203 KKPICIGRHAF-GDQYRATDTV 223 (509)
Q Consensus 203 ~~DivIvREnT-eG~Y~g~e~~ 223 (509)
++|++|+|||| ||+|+|.++.
T Consensus 140 ~iD~vivREnt~Eg~Y~g~e~~ 161 (409)
T TIGR00127 140 ATDFVVPGPGKLELVYKPKDGT 161 (409)
T ss_pred ceEEEEecCCeeeEEEECCCCC
Confidence 57999999999 9999999863
No 46
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=80.48 E-value=1.1 Score=48.63 Aligned_cols=39 Identities=85% Similarity=1.509 Sum_probs=29.4
Q ss_pred CCCCCEEEEecccCccccccceeecCCCceeeeecCCCC
Q 010485 201 GWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (509)
Q Consensus 201 ~~~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~g 239 (509)
++..++++.|+..+|.|.+.++....++.+++++..++.
T Consensus 125 g~~~~i~~~~~~~~~~~~~~d~v~~~~~~id~vivRENT 163 (410)
T PLN00103 125 GWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVFVPEGK 163 (410)
T ss_pred CCCCceeecccccccccccceeccCCCCceEEEEEecCC
Confidence 556689999999999999888764445667776666543
No 47
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=47.17 E-value=89 Score=35.97 Aligned_cols=115 Identities=16% Similarity=0.245 Sum_probs=71.1
Q ss_pred EecccCccccccceee--cCCCceeeeecCCCCCCceeeee-eccCCCceeeeeccChHHHHHHHHHHHHHHHhCCCCEE
Q 010485 209 GRHAFGDQYRATDTVI--KGPGKLKMVFDPEDGTGPVELDV-YNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLY 285 (509)
Q Consensus 209 vREnTeG~Y~g~e~~~--~~~g~~e~~~~~~~g~~~~~~~v-~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt 285 (509)
|-+-.+|-|++-|..+ ...+.+...|...+|... -++- ......+|.+..+++....+.|....++-|++.+--..
T Consensus 173 Va~M~~gDFy~~EkSvt~~~a~~~~Ie~~~~~G~~~-vLK~~~~l~~gEviDat~ms~~aL~~F~~~~i~~Ak~~gvLfS 251 (741)
T TIGR00178 173 VAHMDNGDFYGSEKSATIDAAGSVKIELIAKDGSST-VLKAKLPLLDGEIIDSSVMSKKALRNFIEEEIEDAKEEGVLLS 251 (741)
T ss_pred eeecCCCCCcCCceeEEecCCCeEEEEEEcCCCCEE-EecCCCccCCCCEeehhhhCHHHHHHHHHHHHHHHHHcCcEEE
Confidence 3444555555555432 344566667777666331 1211 11123567888999999999999999999988764444
Q ss_pred EEeCCccccccchh-H----HHHHHHHHHHhhhhccCCCCeeEee
Q 010485 286 LSTKNTILKKYDGR-F----KDIFQQVYEERWRQKFEEHSIWYEH 325 (509)
Q Consensus 286 ~v~KaNVlk~tdgl-f----~~i~~eVa~~eY~~~f~~PdI~~e~ 325 (509)
+=-||+.||-+|-. | +--|.+|.+ +|.+.|++-+|..+.
T Consensus 252 lHlKATMMKVSDPIiFGhaV~vffkdvF~-k~~~~~~~~Gvn~nn 295 (741)
T TIGR00178 252 LHLKATMMKVSDPIMFGHAVREFYKDAFA-KHAEVLKQLGVDVNN 295 (741)
T ss_pred eeehheeecccCceehhHHHHHHHHHHHH-HHHHHHHHcCCCcCc
Confidence 44599999988844 3 223455555 566666655555444
No 48
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=41.67 E-value=1.3e+02 Score=29.15 Aligned_cols=76 Identities=9% Similarity=-0.009 Sum_probs=50.8
Q ss_pred CCcHHHHHHHHHHHHhcCCCCeEEEEEe----cchHHHhh----cCCCCcHH----HHHHHHhcCeeeecCCCCCCcchh
Q 010485 94 DEMTRIIWQMIKDKLIFPYLDLDIKYYD----LGILNRDA----TDDKVTVE----SAEATLKYNVAIKCATITPDETRM 161 (509)
Q Consensus 94 DGIGpEI~~~~~~~l~~~~~~i~~~~~~----~G~~~~~~----tG~~lp~e----tleaik~~da~lkg~~~tP~~~~~ 161 (509)
+|-+..+.+++++-+.+.|.+++..... .+....+. ....+++| .++.++++|++++| ||..
T Consensus 13 ~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~g---sPvy--- 86 (207)
T COG0655 13 NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFG---SPVY--- 86 (207)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEe---CCee---
Confidence 8999999999988887678777766644 23322222 22455544 45559999999987 3543
Q ss_pred hhhcccccCCCCchhHhhhcCc
Q 010485 162 KEFGLKSMWRSPNGTIRNILNG 183 (509)
Q Consensus 162 ~e~~L~~~~~S~n~~LRk~LdL 183 (509)
|.....+++.-+|-
T Consensus 87 --------~g~vsa~~K~fiDR 100 (207)
T COG0655 87 --------FGNVSAQMKAFIDR 100 (207)
T ss_pred --------cCCchHHHHHHHhh
Confidence 24555788988884
No 49
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=39.49 E-value=19 Score=38.17 Aligned_cols=22 Identities=18% Similarity=0.028 Sum_probs=18.0
Q ss_pred ccccEEEEcCC--CcHHHHHHHHH
Q 010485 84 VQNPIVEMDGD--EMTRIIWQMIK 105 (509)
Q Consensus 84 ~~~~I~vLpGD--GIGpEI~~~~~ 105 (509)
|.++|++--|| ||||||+-.+.
T Consensus 1 ~~~~iaIT~GDpaGIGpEii~ka~ 24 (326)
T PRK03371 1 MTKIIAVTMGDPAGIGPEIIIKSL 24 (326)
T ss_pred CCCcEEEeCCCCcchHHHHHHHHh
Confidence 55789999999 99999876553
No 50
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=38.03 E-value=55 Score=37.56 Aligned_cols=117 Identities=20% Similarity=0.277 Sum_probs=65.7
Q ss_pred EEEecccCccccccceee--cCCCceeeeecCCCCCCceeeee-eccCCCceeeeeccChHHHHHHHHHHHHHHHhCCCC
Q 010485 207 CIGRHAFGDQYRATDTVI--KGPGKLKMVFDPEDGTGPVELDV-YNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWP 283 (509)
Q Consensus 207 vIvREnTeG~Y~g~e~~~--~~~g~~e~~~~~~~g~~~~~~~v-~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~ 283 (509)
.-|-+-.+|-|++-|..+ ...+.+...|...+|.. +-++- ......++.+..+++.+..+.|.+...+-|++.+--
T Consensus 167 t~Va~M~~gDFy~nEkS~t~~~~~~~~Ie~~~~~G~~-~vLK~~~~l~~gEviDat~Ms~~aL~~F~~~~i~~AK~~~vL 245 (735)
T PF03971_consen 167 THVAHMSGGDFYGNEKSVTVDKATTVRIEFVGKDGSV-TVLKEGLPLLAGEVIDATFMSAKALRAFYEEQIEDAKEEGVL 245 (735)
T ss_dssp -EEE--SSSSHHHH-EEEE-SSSEEEEEEEEETTS-E-EEEEEEEEE-TT-EEEEEEE-HHHHHHHHHHHHHHHHHHT-E
T ss_pred cceeecCCCCCCCCceEEEecCCCeEEEEEEcCCCCE-EeccCCCcCCCCcEeehhhccHHHHHHHHHHHHHHHHhcCCe
Confidence 344455555555555432 23445666677766632 22221 111245688888999999999999999999887744
Q ss_pred EEEEeCCccccccchh-HHH----HHHHHHHHhhhhccCCCCeeEee
Q 010485 284 LYLSTKNTILKKYDGR-FKD----IFQQVYEERWRQKFEEHSIWYEH 325 (509)
Q Consensus 284 Vt~v~KaNVlk~tdgl-f~~----i~~eVa~~eY~~~f~~PdI~~e~ 325 (509)
..+=-||+.||-+|-. |-. -|.+|.+ +|.+.|++-+|..+.
T Consensus 246 fSlHlKATMMKVSDPIiFGhaV~v~f~~vF~-k~~~~~~~~Gvn~nn 291 (735)
T PF03971_consen 246 FSLHLKATMMKVSDPIIFGHAVKVFFKDVFE-KHGDTFKELGVNPNN 291 (735)
T ss_dssp EEE-B-TTTSTTHHHHHHHHHHHHHCHHHHH-HCHHHHHHCT-SCCC
T ss_pred EEeeehhhhhhccCccHHHHHHHHHHHHHHH-HHHHHHHHcCCCccc
Confidence 4444599999988854 422 3455555 566666655555443
No 51
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=37.69 E-value=19 Score=39.42 Aligned_cols=18 Identities=0% Similarity=-0.038 Sum_probs=16.7
Q ss_pred CCCEEEEeccc-Ccccccc
Q 010485 203 KKPICIGRHAF-GDQYRAT 220 (509)
Q Consensus 203 ~~DivIvREnT-eG~Y~g~ 220 (509)
++|++|+|||| ||+|.+.
T Consensus 143 ~id~vi~rent~e~~y~~~ 161 (413)
T PTZ00435 143 ATDFVVDGPGKLELVFTPA 161 (413)
T ss_pred ceEEEEecCCEEEEEEecC
Confidence 57999999999 9999998
No 52
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]
Probab=35.14 E-value=21 Score=35.43 Aligned_cols=43 Identities=21% Similarity=0.226 Sum_probs=33.8
Q ss_pred hhCCCcc-EE-EeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCCcccccccCCC
Q 010485 336 IKSEGGY-VW-ACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQE 401 (509)
Q Consensus 336 Vk~P~~F-VI-Vt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd~~~~~IAGk~ 401 (509)
|++|+.+ || ||+- ||..|-+|-|+.| ..|-|+|||--| +.|+=
T Consensus 141 vk~~ewl~~igVCTh----------------LGCVp~~~AGd~g--g~~CPCHGSHYd-----asGRI 185 (210)
T KOG1671|consen 141 VKKPEWLVVIGVCTH----------------LGCVPIANAGDYG--GYYCPCHGSHYD-----ASGRI 185 (210)
T ss_pred ccCcceEEEEeeecc----------------ccccccccccccC--ceeccccccccc-----ccCce
Confidence 6678877 44 6664 5888999999776 799999999888 76753
No 53
>KOG3752 consensus Ribonuclease H [Replication, recombination and repair]
Probab=32.90 E-value=51 Score=35.59 Aligned_cols=64 Identities=14% Similarity=0.144 Sum_probs=46.1
Q ss_pred cChHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchhHHHHHHHHHHHhhhhccCCCCeeEeeehHHHH
Q 010485 261 NVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDM 331 (509)
Q Consensus 261 ~Tr~~ieRIar~AFe~A~~rk-k~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~~PdI~~e~~lVDa~ 331 (509)
+.|.+++. +..|.+-|++++ .+|++-+=.+-+...--+|.+.+.++ .|+.++-.+.| ++||||.
T Consensus 256 NnrAEl~A-v~~ALkka~~~~~~kv~I~TDS~~~i~~l~~wv~~~k~~---~~k~~~~~~~i---~~~v~n~ 320 (371)
T KOG3752|consen 256 NNRAELIA-AIEALKKARSKNINKVVIRTDSEYFINSLTLWVQGWKKN---GWKTSNGSDRI---CAYVKNQ 320 (371)
T ss_pred ccHHHHHH-HHHHHHHHHhcCCCcEEEEechHHHHHHHHHHHhhhccC---ccccccCCCcc---ceeeecc
Confidence 56777764 456899998877 58888887776654445677777765 68888777778 7888764
No 54
>COG0372 GltA Citrate synthase [Energy production and conversion]
Probab=31.45 E-value=50 Score=35.89 Aligned_cols=131 Identities=17% Similarity=0.040 Sum_probs=71.6
Q ss_pred ehHHHHHHHHhh------CCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCCccccccc
Q 010485 326 RLIDDMVAYAIK------SEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQK 398 (509)
Q Consensus 326 ~lVDa~amqlVk------~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd~~~~~IA 398 (509)
..+++|=+-||. |..-| +.|+ |-=+||+-|.++|||| ++--|-||-|+.
T Consensus 181 ~~~~a~d~~LiL~ADHe~NASTftarvv----aST~sd~ys~i~agi~-------------aL~GPlHGGAne------- 236 (390)
T COG0372 181 VEARAMDRALILHADHELNASTFTARVV----ASTGSDLYACIAAGIG-------------ALKGPLHGGANE------- 236 (390)
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHH----HhcCCcHHHHHHHHHH-------------HcCCCccCChHH-------
Confidence 455555555554 44456 4333 3347888888888877 344588999887
Q ss_pred CCCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhhhhccccc--cCHHHH
Q 010485 399 GQETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQF--YYLFLL 476 (509)
Q Consensus 399 Gk~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~~~~~~~--~~T~ef 476 (509)
.+..||+-.|.. .+.+++-|.+.++ .|.+-.-.|-... +..++ .--.++
T Consensus 237 -------------~v~~ml~ei~~~----------~~~~~~~v~~~l~-~~~~imGFGHRVY-----k~~DPRa~~lk~~ 287 (390)
T COG0372 237 -------------AVMKMLEEIGSS----------GESAEAYVRKALD-RKERIMGFGHRVY-----KNYDPRAKVLKEL 287 (390)
T ss_pred -------------HHHHHHHHHccc----------chhHHHHHHHHHh-CCCCcCCCCCCCC-----CCCCchHHHHHHH
Confidence 345677777642 2237788888887 5533222222110 00000 224667
Q ss_pred HHHHHHHhhh-hHHHHHHHHHhcccccc--------cccCCC
Q 010485 477 ISKISINKYL-EFRQLLGSLRSSSLTEL--------NHDFWT 509 (509)
Q Consensus 477 ~~~Ii~~~~~-~~~~~~~a~~~~~~~~~--------~~~~~~ 509 (509)
.+.+.++++. .--++...|..--|+++ |-|||+
T Consensus 288 a~~l~~~~g~~~~~~~a~~~e~~~l~~~~~~k~l~PNvDfys 329 (390)
T COG0372 288 AEKLGKELGDLKLYEIAEELEEIALEDLGFEKKLYPNVDFYS 329 (390)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHHHHhhhcccCCCCccccch
Confidence 7777666552 12234444444444443 777763
No 55
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=29.43 E-value=1.6e+02 Score=28.49 Aligned_cols=84 Identities=12% Similarity=0.049 Sum_probs=51.1
Q ss_pred cEEEEcCC----CcHHHHHHHHHHHHhcCCCCeEEEE-EecchHHHh--hcCCCCcHHHHHHHHhcCeeeecCCCCCCcc
Q 010485 87 PIVEMDGD----EMTRIIWQMIKDKLIFPYLDLDIKY-YDLGILNRD--ATDDKVTVESAEATLKYNVAIKCATITPDET 159 (509)
Q Consensus 87 ~I~vLpGD----GIGpEI~~~~~~~l~~~~~~i~~~~-~~~G~~~~~--~tG~~lp~etleaik~~da~lkg~~~tP~~~ 159 (509)
+|++|-|- +-...+.+.+.+.+.+.++++++.+ +++..+... ..+.+--.+..+.++++|+.+.+ ||.+
T Consensus 2 kIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~---tP~Y- 77 (191)
T PRK10569 2 RVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVA---TPVY- 77 (191)
T ss_pred EEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEE---CCcc-
Confidence 46677663 6677777777777765666655432 122222111 12233344566888899998865 5654
Q ss_pred hhhhhcccccCCCCchhHhhhcCce
Q 010485 160 RMKEFGLKSMWRSPNGTIRNILNGT 184 (509)
Q Consensus 160 ~~~e~~L~~~~~S~n~~LRk~LdLy 184 (509)
|.|.-..|..-||..
T Consensus 78 ----------~~s~pg~LKn~iD~l 92 (191)
T PRK10569 78 ----------KASFSGALKTLLDLL 92 (191)
T ss_pred ----------CCCCCHHHHHHHHhC
Confidence 456668899999964
No 56
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=27.41 E-value=1.9e+02 Score=25.39 Aligned_cols=26 Identities=8% Similarity=-0.024 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeC
Q 010485 264 ESIRAFAESSMSLAFSKKWPLYLSTK 289 (509)
Q Consensus 264 ~~ieRIar~AFe~A~~rkk~Vt~v~K 289 (509)
+.+++.+++|+++|...+-+|+++|=
T Consensus 10 ~~s~~al~~a~~~a~~~~~~l~ll~v 35 (146)
T cd01989 10 KKSKNALKWALDNLATKGQTIVLVHV 35 (146)
T ss_pred cccHHHHHHHHHhccCCCCcEEEEEe
Confidence 45788999999999887778877763
No 57
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=26.46 E-value=42 Score=35.76 Aligned_cols=20 Identities=20% Similarity=0.069 Sum_probs=16.4
Q ss_pred ccEEEEcCC--CcHHHHHHHHH
Q 010485 86 NPIVEMDGD--EMTRIIWQMIK 105 (509)
Q Consensus 86 ~~I~vLpGD--GIGpEI~~~~~ 105 (509)
.+|++-.|| ||||||+-.+.
T Consensus 4 p~iaIT~GDpaGIGpEii~ka~ 25 (336)
T PRK05312 4 RPLALSLGDPAGIGPEIALKAW 25 (336)
T ss_pred CeEEEeCCCCcchHHHHHHHHH
Confidence 479999999 99999876553
No 58
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=26.17 E-value=99 Score=32.78 Aligned_cols=34 Identities=12% Similarity=0.330 Sum_probs=27.0
Q ss_pred HHHHHHHhCCCCEEEEeCCccccccchhHHHHHHHHHHHhhh
Q 010485 272 SSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWR 313 (509)
Q Consensus 272 ~AFe~A~~rkk~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~ 313 (509)
||+|+|+ ||-+|.++- | +.+...++..|+.+ +|+
T Consensus 65 yA~eLAk-rG~nvvLIs-----R-t~~KL~~v~kEI~~-~~~ 98 (312)
T KOG1014|consen 65 YARELAK-RGFNVVLIS-----R-TQEKLEAVAKEIEE-KYK 98 (312)
T ss_pred HHHHHHH-cCCEEEEEe-----C-CHHHHHHHHHHHHH-HhC
Confidence 6999997 787888875 4 67778889999976 784
No 59
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=25.09 E-value=48 Score=35.32 Aligned_cols=20 Identities=15% Similarity=0.101 Sum_probs=16.5
Q ss_pred ccEEEEcCC--CcHHHHHHHHH
Q 010485 86 NPIVEMDGD--EMTRIIWQMIK 105 (509)
Q Consensus 86 ~~I~vLpGD--GIGpEI~~~~~ 105 (509)
.+|++--|| ||||||+-.+.
T Consensus 5 p~iaIT~GDpaGIGpEIi~ka~ 26 (332)
T PRK00232 5 PRIAITPGDPAGIGPELVAKLL 26 (332)
T ss_pred CcEEEeCCCCcccHHHHHHHHH
Confidence 468999999 99999886553
No 60
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=24.82 E-value=47 Score=35.34 Aligned_cols=20 Identities=20% Similarity=-0.067 Sum_probs=16.3
Q ss_pred ccEEEEcCC--CcHHHHHHHHH
Q 010485 86 NPIVEMDGD--EMTRIIWQMIK 105 (509)
Q Consensus 86 ~~I~vLpGD--GIGpEI~~~~~ 105 (509)
.+|++--|| ||||||+-.+.
T Consensus 4 p~iaIT~GDpaGIGpEii~ka~ 25 (332)
T PRK03743 4 PIIAIPIGDPAGIGPEIVVKTL 25 (332)
T ss_pred CeEEEeCCCCcchHHHHHHHHH
Confidence 368999999 99999886553
No 61
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=23.98 E-value=51 Score=35.31 Aligned_cols=21 Identities=10% Similarity=-0.013 Sum_probs=17.2
Q ss_pred cccEEEEcCC--CcHHHHHHHHH
Q 010485 85 QNPIVEMDGD--EMTRIIWQMIK 105 (509)
Q Consensus 85 ~~~I~vLpGD--GIGpEI~~~~~ 105 (509)
+.+|++--|| ||||||+-.+.
T Consensus 9 ~p~IaIT~GDpaGIGPEii~ka~ 31 (345)
T PRK02746 9 RPRLAITLGDPAGIGPEVILKAL 31 (345)
T ss_pred CCcEEEeCCCCcchHHHHHHHHH
Confidence 3479999999 99999886554
No 62
>KOG2586 consensus Pyridoxamine-phosphate oxidase [Coenzyme transport and metabolism]
Probab=23.47 E-value=52 Score=32.94 Aligned_cols=72 Identities=26% Similarity=0.382 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHHhhhhccCCCCeeEeeehHHHHHHHHhhCCCccEEEeCCcchhhHhhHhhhhcCCcccccccccCCCC
Q 010485 298 GRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDG 377 (509)
Q Consensus 298 glf~~i~~eVa~~eY~~~f~~PdI~~e~~lVDa~amqlVk~P~~FVIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~ 377 (509)
.+|.+||+|+++. |++. .+.+|+ +.|-+..|-+.|=++ |.-| ++++|
T Consensus 38 ~~F~~wf~EA~~~--------~~~~----~~~am~-----------LsT~~~d~rvssRmv--LlKg--------l~~~g 84 (228)
T KOG2586|consen 38 ELFKKWFQEAAKD--------PDIG----EINAMT-----------LSTADKDGRVSSRMV--LLKG--------LDHDG 84 (228)
T ss_pred HHHHHHHHHHhhC--------CCcC----chhhee-----------ehhccccCCcceeee--eeec--------ccCCC
Confidence 5799999998763 5532 233333 333344444333321 1111 23565
Q ss_pred CceeeecCCcccCCcccccccCCCCCcChhHHHH
Q 010485 378 KTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIF 411 (509)
Q Consensus 378 ~~a~FEp~HGSAPd~~~~~IAGk~i~ANPiA~Il 411 (509)
..|=-.||+.-. ||++.+||-|+|+
T Consensus 85 --f~fytn~~~srk-------~kdL~~NP~Aal~ 109 (228)
T KOG2586|consen 85 --FVFYTNYGTSRK-------GKDLQENPNAALL 109 (228)
T ss_pred --eEEEeecccccc-------ccccccCCcceEE
Confidence 566677887655 9999999999864
No 63
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=22.29 E-value=4.2e+02 Score=24.67 Aligned_cols=82 Identities=13% Similarity=0.153 Sum_probs=46.4
Q ss_pred EEEEcC----CCcHHHHHHHHHHHHhcCCCCeEEEE-EecchHHHhh-c-CCCCcHHHHHHHHhcCeeeecCCCCCCcch
Q 010485 88 IVEMDG----DEMTRIIWQMIKDKLIFPYLDLDIKY-YDLGILNRDA-T-DDKVTVESAEATLKYNVAIKCATITPDETR 160 (509)
Q Consensus 88 I~vLpG----DGIGpEI~~~~~~~l~~~~~~i~~~~-~~~G~~~~~~-t-G~~lp~etleaik~~da~lkg~~~tP~~~~ 160 (509)
|++|-| ++....+.+.+.+.+...+.+++... .++....... . ..+--++..+.++++|+++.+ ||.+
T Consensus 2 il~I~gS~r~~S~t~~l~~~~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~---sP~Y-- 76 (171)
T TIGR03567 2 VLTLSGSPSTPSRSSALLRHVREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVA---TPVY-- 76 (171)
T ss_pred EEEEECCCCCCChHHHHHHHHHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEE---CCcc--
Confidence 555555 37777777777776655555544332 1222221111 1 112224455777889998865 4643
Q ss_pred hhhhcccccCCCCchhHhhhcCc
Q 010485 161 MKEFGLKSMWRSPNGTIRNILNG 183 (509)
Q Consensus 161 ~~e~~L~~~~~S~n~~LRk~LdL 183 (509)
|.|.-..|++-||.
T Consensus 77 ---------~~sip~~LK~~iD~ 90 (171)
T TIGR03567 77 ---------KASYSGVLKALLDL 90 (171)
T ss_pred ---------cCCCCHHHHHHHHh
Confidence 34666788888885
No 64
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=20.49 E-value=1e+02 Score=25.58 Aligned_cols=27 Identities=19% Similarity=0.025 Sum_probs=21.7
Q ss_pred ChHHHHHHHHHHHHHHHhCCCCEEEEe
Q 010485 262 VDESIRAFAESSMSLAFSKKWPLYLST 288 (509)
Q Consensus 262 Tr~~ieRIar~AFe~A~~rkk~Vt~v~ 288 (509)
-.+.+++.+++|+++|...+.+|+++|
T Consensus 11 ~~~~~~~al~~a~~la~~~~~~i~~l~ 37 (140)
T PF00582_consen 11 GSEESRRALRFALELAKRSGAEITLLH 37 (140)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhhCCeEEEEE
Confidence 355677999999999999887766664
No 65
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=20.16 E-value=66 Score=34.23 Aligned_cols=19 Identities=11% Similarity=-0.011 Sum_probs=16.2
Q ss_pred cEEEEcCC--CcHHHHHHHHH
Q 010485 87 PIVEMDGD--EMTRIIWQMIK 105 (509)
Q Consensus 87 ~I~vLpGD--GIGpEI~~~~~ 105 (509)
+|++--|| ||||||+-.+.
T Consensus 7 ~iaIT~GDpaGIGpEii~kal 27 (329)
T PRK01909 7 QIAITTGEPAGVGPELTVRAL 27 (329)
T ss_pred eEEEeCCCCcchHHHHHHHHH
Confidence 68999999 99999886554
No 66
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=20.00 E-value=65 Score=33.97 Aligned_cols=18 Identities=22% Similarity=-0.031 Sum_probs=15.3
Q ss_pred cEEEEcCC--CcHHHHHHHH
Q 010485 87 PIVEMDGD--EMTRIIWQMI 104 (509)
Q Consensus 87 ~I~vLpGD--GIGpEI~~~~ 104 (509)
+|++--|| ||||||+-.+
T Consensus 3 ~iaiT~GDpaGIGpEii~ka 22 (307)
T PRK03946 3 KIAISIGDINGIGLEIALKS 22 (307)
T ss_pred eEEEcCCCCcccHHHHHHHh
Confidence 68899999 9999988655
Done!