Query 010485
Match_columns 509
No_of_seqs 193 out of 1461
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 07:49:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010485.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010485hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3us8_A Isocitrate dehydrogenas 100.0 6E-120 2E-124 953.3 32.4 398 80-485 25-422 (427)
2 4aoy_A Isocitrate dehydrogenas 100.0 1E-117 5E-122 929.2 31.1 398 80-485 2-399 (402)
3 1lwd_A Isocitrate dehydrogenas 100.0 2E-116 7E-121 924.8 32.8 404 80-485 3-407 (413)
4 2uxq_A Isocitrate dehydrogenas 100.0 7E-116 2E-120 918.0 31.4 397 81-485 2-398 (402)
5 1zor_A Isocitrate dehydrogenas 100.0 4E-114 1E-118 904.2 33.1 393 80-485 2-396 (399)
6 2qfy_A Isocitrate dehydrogenas 100.0 3E-109 1E-113 873.1 30.7 402 80-485 17-420 (427)
7 1x0l_A Homoisocitrate dehydrog 100.0 7E-107 2E-111 830.9 32.6 327 86-485 2-331 (333)
8 3flk_A Tartrate dehydrogenase/ 100.0 4E-106 1E-110 833.3 29.7 343 84-485 4-361 (364)
9 2y3z_A 3-isopropylmalate dehyd 100.0 9E-106 3E-110 829.3 30.2 332 86-486 4-349 (359)
10 3ty4_A Probable homoisocitrate 100.0 4E-105 1E-109 825.7 32.0 333 85-485 10-365 (366)
11 3u1h_A 3-isopropylmalate dehyd 100.0 2E-105 7E-110 832.1 29.9 342 82-485 20-377 (390)
12 3dms_A Isocitrate dehydrogenas 100.0 7E-105 2E-109 838.9 32.5 365 81-484 30-426 (427)
13 1wpw_A 3-isopropylmalate dehyd 100.0 6E-105 2E-109 817.5 30.9 328 86-485 2-336 (336)
14 1hqs_A Isocitrate dehydrogenas 100.0 1E-105 5E-110 843.4 26.4 370 80-484 12-422 (423)
15 2e0c_A 409AA long hypothetical 100.0 3E-105 1E-109 838.0 27.9 360 80-485 17-407 (409)
16 3vmk_A 3-isopropylmalate dehyd 100.0 6E-105 2E-109 826.9 29.4 345 85-485 13-372 (375)
17 3udu_A 3-isopropylmalate dehyd 100.0 3E-105 1E-109 825.3 26.8 335 86-485 7-356 (361)
18 2d4v_A Isocitrate dehydrogenas 100.0 1E-104 4E-109 836.9 28.6 363 80-484 19-429 (429)
19 1cnz_A IPMDH, IMDH, protein (3 100.0 2E-104 8E-109 820.7 29.9 340 86-485 5-360 (363)
20 2iv0_A Isocitrate dehydrogenas 100.0 7E-105 2E-109 835.7 25.7 360 80-485 20-410 (412)
21 1tyo_A Isocitrate dehydrogenas 100.0 2E-104 6E-109 837.0 28.4 367 81-485 29-422 (435)
22 3blx_B Isocitrate dehydrogenas 100.0 7E-105 2E-109 821.4 24.5 327 84-484 20-354 (354)
23 3blx_A Isocitrate dehydrogenas 100.0 1E-104 4E-109 818.1 25.9 330 81-485 13-347 (349)
24 2d1c_A Isocitrate dehydrogenas 100.0 8E-104 3E-108 838.2 32.6 338 79-486 9-357 (496)
25 3r8w_A 3-isopropylmalate dehyd 100.0 3E-104 9E-109 827.6 26.5 344 83-486 40-399 (405)
26 1vlc_A 3-isopropylmalate dehyd 100.0 8E-104 3E-108 816.2 28.5 336 86-485 13-363 (366)
27 1a05_A IPMDH, IMDH, 3-isopropy 100.0 5E-104 2E-108 817.0 27.2 341 86-486 2-356 (358)
28 1w0d_A 3-isopropylmalate dehyd 100.0 1E-103 5E-108 808.0 28.2 329 86-484 2-337 (337)
29 1itw_A Isocitrate dehydrogenas 96.9 0.014 4.9E-07 63.3 15.6 193 254-457 454-653 (741)
30 2b0t_A NADP isocitrate dehydro 96.9 0.015 5E-07 63.2 15.6 193 254-457 450-649 (738)
31 2hi1_A 4-hydroxythreonine-4-ph 92.2 0.084 2.9E-06 54.1 3.7 140 260-418 181-328 (330)
32 4aty_A Terephthalate 1,2-CIS-d 92.2 0.081 2.8E-06 54.4 3.6 136 260-418 196-340 (349)
33 1yxo_A 4-hydroxythreonine-4-ph 92.0 0.085 2.9E-06 54.0 3.5 140 260-419 174-323 (328)
34 3lxy_A 4-hydroxythreonine-4-ph 91.9 0.091 3.1E-06 53.9 3.5 139 260-419 179-328 (334)
35 3tsn_A 4-hydroxythreonine-4-ph 90.4 0.16 5.4E-06 52.8 3.6 66 340-418 294-362 (367)
36 2qfy_A Isocitrate dehydrogenas 61.7 1.4 4.9E-05 46.4 -0.5 16 203-218 156-171 (427)
37 2b0t_A NADP isocitrate dehydro 46.9 27 0.00093 38.4 6.3 116 209-326 171-294 (738)
38 1itw_A Isocitrate dehydrogenas 46.7 27 0.00092 38.4 6.2 116 209-326 173-296 (741)
39 3u7r_A NADPH-dependent FMN red 44.2 57 0.0019 30.1 7.4 83 84-183 1-92 (190)
40 1yxo_A 4-hydroxythreonine-4-ph 32.2 21 0.00072 36.4 2.5 20 85-104 2-23 (328)
41 2hi1_A 4-hydroxythreonine-4-ph 29.4 25 0.00085 35.9 2.5 19 86-104 7-27 (330)
42 3k1y_A Oxidoreductase; structu 27.8 1.7E+02 0.0057 26.8 7.7 84 86-183 12-110 (191)
43 4aty_A Terephthalate 1,2-CIS-d 23.3 36 0.0012 34.6 2.4 19 87-105 10-30 (349)
44 3lxy_A 4-hydroxythreonine-4-ph 22.5 39 0.0013 34.5 2.5 17 86-102 9-27 (334)
No 1
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=100.00 E-value=5.9e-120 Score=953.27 Aligned_cols=398 Identities=63% Similarity=1.030 Sum_probs=370.9
Q ss_pred cceeccccEEEEcCCCcHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcc
Q 010485 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (509)
Q Consensus 80 ~ki~~~~~I~vLpGDGIGpEI~~~~~~~l~~~~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~ 159 (509)
+||+|.+||++|||||||||||++++++|.+++++|+|+++++|.+++++||+++|++++++|+++||+||||++||.+.
T Consensus 25 ~~i~~~~~I~vipGDGIGpEI~~~~~~vL~~~~~~i~~~~~~~G~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~ 104 (427)
T 3us8_A 25 AKIKVANPVVELDGDEMTRIIWQFIKDKLIHPYLDLDLEYYDLGVENRDATDDQVTIDAANAIKKHGVGVKCATITPDEG 104 (427)
T ss_dssp CCEECCSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHH
T ss_pred ccccccceEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCcc
Confidence 69999999999999999999999999999888999999999999999999999999999999999999999999999998
Q ss_pred hhhhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCCCCCCCCEEEEecccCccccccceeecCCCceeeeecCCCC
Q 010485 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (509)
Q Consensus 160 ~~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~~~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~g 239 (509)
+++||+++++|+|+|++|||+||||+|+||+.|+++|++.++|++|||||||||||+|+|+|+...++++.++.|++++|
T Consensus 105 ~~~e~~l~~~~~s~n~~LRk~LdlyanvRPv~~~~ip~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~l~~~~~~G 184 (427)
T 3us8_A 105 RVEEFKLKKMWKSPNGTIRNILGGVIFREPIICKNVPRLVPGWTKPIIVGRHAFGDQYRATDFKFPGKGKLSIKFVGEDG 184 (427)
T ss_dssp HHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETTS
T ss_pred ccccccccccccCchHHHHHHhCCeEEecceeccCCCCCCCCCCCCEEEEEeCCCCccCCceeEEecCCcceeeeecccc
Confidence 89999999999999999999999999999986699998888888999999999999999999998777877777877766
Q ss_pred CCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchhHHHHHHHHHHHhhhhccCCC
Q 010485 240 TGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319 (509)
Q Consensus 240 ~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~~P 319 (509)
+.....+++|++++++++++|||+++|||+|+||+||++|++|||+|||+||||.|||+|+++|+|||+++|.++|++|
T Consensus 185 -~~~~~~~~~~~~~~va~~~~~T~~~~eRiar~AFe~A~~r~kkVt~v~KaNIlk~tdglfr~~~~eva~~eYp~~~~~~ 263 (427)
T 3us8_A 185 -QTIEHDVYDAPGAGVALAMYNLDESITEFARASFNYGLQRKVPVYLSTKNTILKAYDGRFKDIFQKVFDEEFAAQFKAE 263 (427)
T ss_dssp -CEEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred -ccccccccccCCCcEEEEEeeCHHHHHHHHHHHHHHHHHcCCcEEEEECcccchhhhhHHHHHHHHHHHHhCccccCCC
Confidence 4445667778888888999999999999999999999999999999999999999999999999999987898888888
Q ss_pred CeeEeeehHHHHHHHHhhCCCccEEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCCcccccccC
Q 010485 320 SIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKG 399 (509)
Q Consensus 320 dI~~e~~lVDa~amqlVk~P~~FVIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd~~~~~IAG 399 (509)
+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|||++++++||||+||||||||+++|||
T Consensus 264 ~I~~~~~~VD~~~mqlv~~P~~FVivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~~a~fEp~HGSAPd~~~~~iAG 343 (427)
T 3us8_A 264 KLWYEHRLIDDMVASALKWSGGYVWACKNYDGDVQSDIVAQGFGSLGLMTSVLMTPDGKTVEAEAAHGTVTRHYRQHQKG 343 (427)
T ss_dssp TCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHSCTTSEEEEEECTTSCCEEEECCSCCCHHHHHHHHTT
T ss_pred CeEEEEEEHHHHHHHHhhCCCCcEEEeCCcCCcHHHHHHHHhcCChhhCceeEECCCCCeEEEeCCCCCcCCccchhcCC
Confidence 99999999999999999999999999999999999999999999999999999998764599999999999999999999
Q ss_pred CCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhhhhccccccCHHHHHHH
Q 010485 400 QETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQFYYLFLLISK 479 (509)
Q Consensus 400 k~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~~~~~~~~~T~ef~~~ 479 (509)
||++|||+|+||||+|||+|||++++ |++|.++|++|++||.++|+ +|++|+||||.+.. ..+.++|+||+|+
T Consensus 344 k~i~ANP~A~IlS~ammL~hlG~~~~-~~~l~~~A~~Ie~Av~~~l~-~g~~T~Dlgg~~~~-----~~~~~~T~e~~da 416 (427)
T 3us8_A 344 EETSTNSIASIFAWTRGLAHRAKLDG-NAELAKFSETLERVCVDTVE-SGFMTKDLALLIGP-----DQPWLSTTGFLDK 416 (427)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHH-TTCCBHHHHHHHCT-----TCCCBCHHHHHHH
T ss_pred CCceeCHHHHHHHHHHHHHHhccccc-cchhHHHHHHHHHHHHHHHH-cCCcCccccccccc-----CCcccCHHHHHHH
Confidence 99889999999999999999999887 78889999999999999999 99999999983200 1224799999999
Q ss_pred HHHHhh
Q 010485 480 ISINKY 485 (509)
Q Consensus 480 Ii~~~~ 485 (509)
|+++|.
T Consensus 417 V~~~l~ 422 (427)
T 3us8_A 417 IDENLR 422 (427)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999985
No 2
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=100.00 E-value=1.4e-117 Score=929.25 Aligned_cols=398 Identities=49% Similarity=0.818 Sum_probs=347.4
Q ss_pred cceeccccEEEEcCCCcHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcc
Q 010485 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (509)
Q Consensus 80 ~ki~~~~~I~vLpGDGIGpEI~~~~~~~l~~~~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~ 159 (509)
+||+|.+||++|||||||||+|++++++++.++++|+|+++++|.+++++||+++|++++++|+++||+||||++||.+.
T Consensus 2 ~~i~~~~~i~~i~GDei~~e~~~~i~~v~~~~~~~i~~~~~d~G~~~~~~tg~~lp~etl~aik~~~v~lkGa~~tP~~~ 81 (402)
T 4aoy_A 2 SKIKMKVPLVEMDGDEMTRIIWRLIKENLLEPYIELNTEYYDLGLENRDKTEDQVTIDAARAIQKYGVGVKCATITPNAQ 81 (402)
T ss_dssp CCEECSSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHHTTHHHHHHHHHHHHHSEEEECCCCCCCHH
T ss_pred CcccccCcEEEECCCchHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECcccCCCcc
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCCCCCCCCEEEEecccCccccccceeecCCCceeeeecCCCC
Q 010485 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (509)
Q Consensus 160 ~~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~~~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~g 239 (509)
+++|++|+++|+|||++|||+||||+|+||+.++++|++.++|+.|||||||||||+|+|+|+....++++++.|.+++|
T Consensus 82 ~~~~~~l~~~~~s~n~~LR~~Ldlyan~rPv~~~~i~~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~~~~~~~~g 161 (402)
T 4aoy_A 82 RVEEYNLKKMWKSPNGTIRAILDGTVFRAPIVVNSIKPFVKGWKKPISIARHAYGDVYKNVEYYVPSAGKAELVFTSENG 161 (402)
T ss_dssp HHHHTTCSSCCCCHHHHHHHHHTCEEEEEECCCTTSCCSBTTCCBCCEEEEC------CCEEEEECSCEEEEEEEEETTS
T ss_pred ccccccccccccChHHHHHHHhCCeEEeeeEeccCCCCcCCCCCCCEEEEEeccCCeecCceeeccCccceeeeeeccCC
Confidence 89999999999999999999999999999996688888777788999999999999999999998888888888888776
Q ss_pred CCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchhHHHHHHHHHHHhhhhccCCC
Q 010485 240 TGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319 (509)
Q Consensus 240 ~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~~P 319 (509)
.. ....+.+|+++++++++++|+++++||+|+||+||++|+++||+|||+||||.|||+|+++|+|||+++|.++|++|
T Consensus 162 ~~-~~~~~~~~~~~gv~~~~~~t~~~~eRiar~AF~~A~~~~~~vt~v~KaNilk~tdglf~~~~~eva~~eyp~~~~~~ 240 (402)
T 4aoy_A 162 EV-SRQTIHEFDGPGVIMGMHNTDKSIRSFARACFNYALDMNQDLWFSTKDTISKTYDHRFKDIFQEIYENEYKEKFEAK 240 (402)
T ss_dssp CE-EEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSHHHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred cc-cccccccccCCeeEEEEEecHHHHHHHHHHHHHHHHHcCCcEEEEECCccchhhhhHHHHHHHHHHHHhCcccccCC
Confidence 43 44556778888999999999999999999999999999999999999999999999999999999987898888888
Q ss_pred CeeEeeehHHHHHHHHhhCCCccEEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCCcccccccC
Q 010485 320 SIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKG 399 (509)
Q Consensus 320 dI~~e~~lVDa~amqlVk~P~~FVIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd~~~~~IAG 399 (509)
+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|||+++ .++|||+||||||||+++|||
T Consensus 241 ~i~~~~~~vD~~~~~lv~~P~~fVivt~Nl~GDIlSD~~A~l~GslGl~psanig~~~-~~~fEp~HGSApd~~~~~iaG 319 (402)
T 4aoy_A 241 NLQYFYTLIDDAVARIIRSEGGMVWACKNYDGDVMSDMVASAFGSLAMMTSVLVSPDG-KYEFEAAHGTVTRHYYKHLKG 319 (402)
T ss_dssp TCCEEEEEHHHHHHHHHTSCBCSEEECCC-CHHHHHHHHHHHHSCTTSEEEEEECTTC-CEEEEC---------------
T ss_pred CeEEEEEEHHHHHHHHhhCCCCcEEEECCcchHHHHHHHHHhcCchhhccccccCCCC-ceEEeeccCCccccchhhccC
Confidence 9999999999999999999999999999999999999999999999999999999887 599999999999999999999
Q ss_pred CCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhhhhccccccCHHHHHHH
Q 010485 400 QETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQFYYLFLLISK 479 (509)
Q Consensus 400 k~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~~~~~~~~~T~ef~~~ 479 (509)
||++|||+|+||||+|||+|+|++++ +++|.++|++|++||.++|+ +|++|+||||...+ ...+.++|+||+|+
T Consensus 320 k~~~aNP~A~Ils~a~mL~~~g~~~~-~~~l~~~A~~ie~Av~~~l~-~g~~T~Dlgg~~~~----~~~~~~~T~ef~~a 393 (402)
T 4aoy_A 320 EETSTNSMATIFAWTGALKKRGELDG-IKELVDFATKLEQASVQTIE-NGVMTKDLASLSEV----PEKKIVNTEDFLKE 393 (402)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHH-TTEEEHHHHTTCCC----SCCEEECHHHHHHH
T ss_pred CCcCcCcHHHHHHHHHHHHHhccccC-CchHHHHHHHHHHHHHHHHH-cCCCCccccccccc----CCCCCcCHHHHHHH
Confidence 99779999999999999999999876 77889999999999999999 99999999986311 01234799999999
Q ss_pred HHHHhh
Q 010485 480 ISINKY 485 (509)
Q Consensus 480 Ii~~~~ 485 (509)
|+++|.
T Consensus 394 v~~~l~ 399 (402)
T 4aoy_A 394 IRKTFE 399 (402)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999985
No 3
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A*
Probab=100.00 E-value=2e-116 Score=924.84 Aligned_cols=404 Identities=61% Similarity=1.020 Sum_probs=362.2
Q ss_pred cceeccccEEEEcCCCcHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcc
Q 010485 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (509)
Q Consensus 80 ~ki~~~~~I~vLpGDGIGpEI~~~~~~~l~~~~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~ 159 (509)
+||+|.+||++|||||||||||++++++|+.++++|+|+++++|++++++||+++|++|+++|+++|++||||++||++.
T Consensus 3 ~~i~~~~~i~~l~GDgiGpei~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~ik~~da~LkGav~tP~~~ 82 (413)
T 1lwd_A 3 QRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEA 82 (413)
T ss_dssp CCEECSSCEEEEECCHHHHHHHHHHHHHTTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHH
T ss_pred CcceecccEEEecCCChhHHHHHHHHHHHHhCCCCeEEEEEecCHHHHhccCCcCcHHHHHHHHHCCEEEECCccCCCcc
Confidence 59999999999999999999999999999888999999999999999999999999999999999999999999999887
Q ss_pred hhhhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCCCCCCCCEEEEecccCccccccceeecCCCceeeeecCCCC
Q 010485 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (509)
Q Consensus 160 ~~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~~~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~g 239 (509)
+++++.++++|+|+|++||++||||+|+||++++++|++.++|+.||+|+||||||+|+|+|+.+.++|..++.|.+++|
T Consensus 83 ~~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~~~~~~~~~~~~~~divIvRe~t~g~Y~g~d~~~~~e~~~~~~~~~~~g 162 (413)
T 1lwd_A 83 RVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDG 162 (413)
T ss_dssp HHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETTC
T ss_pred cCccccccccccCccHHHHHhcCCEEEEeeeeccCCCCCCCCCCCceEEEecccCCccCCceeEeccCCcceeeEeccCC
Confidence 77887777799999999999999999999997789998887788999999999999999999998888877777777655
Q ss_pred CCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchhHHHHHHHHHHHhhhhccCCC
Q 010485 240 TGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319 (509)
Q Consensus 240 ~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~~P 319 (509)
.......++++++++++++++||++++|||+|+||+||++|++|||+|||+||||.|||+|+++|+|||+++|.++|++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~~ 242 (413)
T 1lwd_A 163 SSAKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKY 242 (413)
T ss_dssp CCCEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred cccccccccccCCCcEEEEEEEcHHHHHHHHHHHHHHHHHhCCceEEEECCcchhhHHHHHHHHHHHHHHHhCCCcccCC
Confidence 33334555566667888999999999999999999999999999999999999999999999999999955895555555
Q ss_pred CeeEeeehHHHHHHHHhhCCCccEEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCCcccccccC
Q 010485 320 SIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKG 399 (509)
Q Consensus 320 dI~~e~~lVDa~amqlVk~P~~FVIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd~~~~~IAG 399 (509)
+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|||+++.++||||+||||||||+++|||
T Consensus 243 ~I~~~~~~VD~~~mqlv~~P~~FVivt~NlfGDILSD~aA~l~GslGl~pSanig~~~~~~~fEpvHGSAPdi~~~~~aG 322 (413)
T 1lwd_A 243 KIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKG 322 (413)
T ss_dssp TCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECCSCCCHHHHHHHHTT
T ss_pred eEEEEEEEHHHHHHHHhcCCCceEEEecccccchHHHHHHhhcCCccccccceeCCCCCceEEeCCCCChhhhhhhhhcC
Confidence 59999999999999999999999999999999999999999999999999999998873489999999999999999999
Q ss_pred CCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhhhhcc-ccccCHHHHHH
Q 010485 400 QETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLID-RQFYYLFLLIS 478 (509)
Q Consensus 400 k~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~~~~-~~~~~T~ef~~ 478 (509)
||++|||+|+|||++|||+|||+.+. |++|.++|++|++||.++|+ +|++|+|||+...|...... .+.++|+||+|
T Consensus 323 k~~~ANP~A~IlS~ammL~~lg~~~~-~~~l~~~A~~Ie~Av~~~l~-~G~~T~Dlg~~~~G~~~~~~~~~~~~T~e~~d 400 (413)
T 1lwd_A 323 RPTSTNPIASIFAWTRGLEHRGKLDG-NQDLIRFAQTLEKVCVETVE-SGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLD 400 (413)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHCTTSCCBTTTBCCHHHHHH
T ss_pred CCCccChHHHHHHHHHHHHHcCCccc-cchhHHHHHHHHHHHHHHHH-cCCcCcccccccCCcccccccCCCCCHHHHHH
Confidence 99669999999999999999999876 78889999999999999999 99999999742101000000 02479999999
Q ss_pred HHHHHhh
Q 010485 479 KISINKY 485 (509)
Q Consensus 479 ~Ii~~~~ 485 (509)
+|+++|.
T Consensus 401 aV~~~l~ 407 (413)
T 1lwd_A 401 TIKSNLD 407 (413)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999994
No 4
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*
Probab=100.00 E-value=7.1e-116 Score=918.00 Aligned_cols=397 Identities=43% Similarity=0.741 Sum_probs=359.2
Q ss_pred ceeccccEEEEcCCCcHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcch
Q 010485 81 RVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (509)
Q Consensus 81 ki~~~~~I~vLpGDGIGpEI~~~~~~~l~~~~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~~ 160 (509)
||+|.+||++|||||||||||++++++|++++++|+|+++++|++++++||+++|++|+++|+++|++||||++||++.+
T Consensus 2 ~~~~~~~i~~i~GDgig~ei~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkGav~tP~~~~ 81 (402)
T 2uxq_A 2 KIQMKTPLVELDGDEMTRVLWPLIKDKLLLPFIDLQTEYYDLGIEERDRTNDQITIDAAEAIKKYGVGVKNATITPNQDR 81 (402)
T ss_dssp CBCCSSCEEEEECCHHHHHHHHHHHHHHTTTTBCCCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHH
T ss_pred ceeeecceEEecCCCccHHHHHHHHHHHHhCCCCeEEEEEecCHHHHHhhCCcCCHHHHHHHHhCCEEEECCccCCCccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred hhhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCCCCCCCCEEEEecccCccccccceeecCCCceeeeecCCCCC
Q 010485 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGT 240 (509)
Q Consensus 161 ~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~~~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~g~ 240 (509)
+++++++++|+|+|++|||+||||+|+||++++++|++.++|+.||||+||||||+|+|.|+.+.++|..++.+.+++|
T Consensus 82 ~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~~~~~~~~~~~~~~divIvRE~teg~Y~g~e~~~~~~g~~~~~~~~~~g- 160 (402)
T 2uxq_A 82 VEEYGLKEQWKSPNATVRAMLDGTVFRKPIMVKNIKPSVRSWQKPIVVGRHAYGDFYKNAEIFAEAGGKLEIVVTDKNG- 160 (402)
T ss_dssp HHHHTCSSCCCCHHHHHHHHHCCEEEEEECCCTTCCCSBTTCCSCCEEEEECSCGGGGCEEEEETTCEEEEEEEECTTS-
T ss_pred CccccccccccCchHHHHHHhCCeEEEEEEEcCCCCCCCCCCCCCeEEEeccCCCcccCcceeeccCCcceeeeeccCC-
Confidence 8888787899999999999999999999997788887777788999999999999999999998777776666666655
Q ss_pred CceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchhHHHHHHHHHHHhhhhccCCCC
Q 010485 241 GPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHS 320 (509)
Q Consensus 241 ~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~~Pd 320 (509)
......+++|+.+++++.++||++++|||+|+||+||++|++|||+|||+||||.|||+|+++|+|||+++|.++|++.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~~~ 240 (402)
T 2uxq_A 161 KETRQTIMEVDEPAIVQGIHNTVASIGHFARACFEYSLDQKIDCWFATKDTISKQYDQRFKIIFEEIFAQEYKEKFAAAG 240 (402)
T ss_dssp CEEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHHT
T ss_pred ccccccccccCCCceEEEEEECHHHHHHHHHHHHHHHHHcCCcEEEEECCCcchhhHHHHHHHHHHHHHHhCCCcccCCe
Confidence 33345556666678889999999999999999999999999999999999999999999999999999558944444444
Q ss_pred eeEeeehHHHHHHHHhhCCCccEEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCCcccccccCC
Q 010485 321 IWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQ 400 (509)
Q Consensus 321 I~~e~~lVDa~amqlVk~P~~FVIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd~~~~~IAGk 400 (509)
|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|||+++ .+||||+||||||+|+++||||
T Consensus 241 I~~~~~~vD~~~mqlv~~P~~fVivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~-~~lfEpvHGSAPdi~~~~~aGk 319 (402)
T 2uxq_A 241 IEYFYTLIDDVVARMMKTEGGMLWACKNYDGDVMSDMVASAFGSLAMMSSVLVSPYG-YFEYEAAHGTVQRHYYQHLKGE 319 (402)
T ss_dssp CCEEEEEHHHHHHHHTTCCCCSEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTS-CEEEECCSCCCHHHHHHHHTTC
T ss_pred EEEEEEEHHHHHHHHccCCCceEEEEcccchHHHHHHHHHhcCCccccccceecCCC-CeEEeCCCCChhhhhhhhhcCC
Confidence 999999999999999999999999999999999999999999999999999999886 4899999999999999999999
Q ss_pred CCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhhhhccccccCHHHHHHHH
Q 010485 401 ETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQFYYLFLLISKI 480 (509)
Q Consensus 401 ~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~~~~~~~~~T~ef~~~I 480 (509)
|++|||+|+|||++|||+|||+.+. |++|.++|++|++||.++|+ +|++|+||||...| ...+.++|+||+|+|
T Consensus 320 ~~~ANP~A~IlS~ammL~~lg~~~~-~~~l~~~A~~Ie~Av~~~l~-~G~~T~Dlgg~~~g----~~~~~~~T~e~~daI 393 (402)
T 2uxq_A 320 RTSTNPVALIYAWTGALRKRGELDG-TPDLCAFCDSLEAITIECIE-SGYMTGDLARICEP----AAIKVLDSIEFIDEL 393 (402)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHH-TTEECHHHHTTCSS----CCSEECCHHHHHHHH
T ss_pred CcccCcHHHHHHHHHHHHHhCcccc-cchHHHHHHHHHHHHHHHHH-cCCcCccccccCCC----CCCCCcCHHHHHHHH
Confidence 9559999999999999999999876 78899999999999999999 99999999884211 001136999999999
Q ss_pred HHHhh
Q 010485 481 SINKY 485 (509)
Q Consensus 481 i~~~~ 485 (509)
+++|.
T Consensus 394 ~~~l~ 398 (402)
T 2uxq_A 394 GKRLQ 398 (402)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99984
No 5
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima}
Probab=100.00 E-value=4.2e-114 Score=904.16 Aligned_cols=393 Identities=47% Similarity=0.796 Sum_probs=354.1
Q ss_pred cceeccccEEEEcCCCcHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcc
Q 010485 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (509)
Q Consensus 80 ~ki~~~~~I~vLpGDGIGpEI~~~~~~~l~~~~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~ 159 (509)
+||+|.+||++|||||||||||++++++|+.++++|+|+++++|++++++||+++|++|+++|+++|++||||++||.+.
T Consensus 2 ~~~~~~~~I~~l~GDgiG~ei~~~v~~~l~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~ik~~da~lkGav~tP~~~ 81 (399)
T 1zor_A 2 EKVKVKNPIVELDGDEMARVMWKMIKEKLILPYLDIQLVYFDLGIKKRDETDDQITIEAAKAIKKYGVGVKCATITPDAE 81 (399)
T ss_dssp CCEECCSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHH
T ss_pred CcccccccEEEecCCcccHHHHHHHHHHHHhCCCCeEEEEEeCCHHHHhccCCcCcHHHHHHHHHCCEEEEcCccCCCcc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hhhhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCCCCCCCCEEEEecccCccccccceeecCCCceeeeecCCCC
Q 010485 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (509)
Q Consensus 160 ~~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~~~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~g 239 (509)
+++++.++++|+|+|++|||+||||+|+||++++++|++.++|+.||+|+||||||+|+|+++.+.++++.+..|.++.+
T Consensus 82 ~~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~~~~~~~~~~~~~~divi~Re~t~g~Y~g~d~~~~~e~t~~~~y~~e~~ 161 (399)
T 1zor_A 82 RVKEYNLKKAWKSPNATIRAYLDGTVFRKPIMVKNVPPLVKRWKKPIIIGRHAYGDIYNAVEAKVEGPAEVELVVRNKEN 161 (399)
T ss_dssp HHHHHTCSSCCCCHHHHHHHHHTCEEEEEECCBTTBCCSBTTCCSCCEEEECCSSGGGGCEEEEECSSEEEEEEEESSSC
T ss_pred cCccccccccccCchHHHHHHhCCEEEEEEeecCCCCCcccCcCccceeeecccCCCcCCceeEecCCCcceeeEecccc
Confidence 67777777789999999999999999999998888988877788999999999999999999988777776766765311
Q ss_pred CCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchhHHHHHHHHHHHhhhhccCCC
Q 010485 240 TGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319 (509)
Q Consensus 240 ~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~~P 319 (509)
....+++++++++++.++||++++|||+|+||+||++|++|||+|||+||||.|||+|+++|+|||++ |+++| |
T Consensus 162 ---~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvlk~sdglf~~~~~eva~~-~~~~y--p 235 (399)
T 1zor_A 162 ---KTLLVHKFEGNGVVMAMHNLEKSIRSFAQSCINYAISEKVDIWFATKDTISKVYHAYFKDIFQEEVDK-RKEEL--E 235 (399)
T ss_dssp ---EEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTCTTHHHHHHHHHHHHHHH-THHHH--H
T ss_pred ---ccceeeccCCceEEEEEEecHHHHHHHHHHHHHHHHHhCCeEEEEECcccHHHHHHHHHHHHHHHHHh-hcccC--C
Confidence 23345556667888999999999999999999999999999999999999999999999999999873 22233 7
Q ss_pred --CeeEeeehHHHHHHHHhhCCCccEEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCCcccccc
Q 010485 320 --SIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQ 397 (509)
Q Consensus 320 --dI~~e~~lVDa~amqlVk~P~~FVIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd~~~~~I 397 (509)
+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|||+++ .+||||+|||||||++++|
T Consensus 236 ~~~I~~~~~~vD~~~mqlv~~P~~fVivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~-~~~fEpvHGSAPdi~~~~i 314 (399)
T 1zor_A 236 KAGVNYRYMLIDDAAAQILRSEGGMLWACMNYEGDIMSDMIASGFGSLGLMTSVLVSPDG-VYEFEAAHGTVRRHYYRYL 314 (399)
T ss_dssp HTTCCEEEEEHHHHHHHHHHSCCCSEEEECHHHHHHHHHHHHHHHCCGGGEEEEEECTTC-CEEEEESSCCCHHHHHHHT
T ss_pred CCcEEEEEEEHHHHHHHhccCCCceEEEEccchHHHHHHHHHHhcCCccccceeEecCCC-CeEEeCCCCcccccchhhh
Confidence 5999999999999999999999999999999999999999999999999999999886 4899999999999999999
Q ss_pred cCCCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhhhhccccccCHHHHH
Q 010485 398 KGQETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQFYYLFLLI 477 (509)
Q Consensus 398 AGk~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~~~~~~~~~T~ef~ 477 (509)
||||++|||+|+|||++|||+|||+.+. +++|.++|++|++||.++|+ +|++|+||||...| ...+.++|+||+
T Consensus 315 aGk~~~ANP~A~IlS~ammL~~lg~~~~-~~~l~~~A~~Ie~Av~~~l~-~g~~T~Dlgg~~~g----~~~~~~~T~e~~ 388 (399)
T 1zor_A 315 KGEKTSTNPTASIFAWTGAIRKRGELDG-TPEVCEFADKLEKAVINTIE-SGVITKDLQPFTEP----PIDKYVTLEEFI 388 (399)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHH-TTCCCGGGGGGCSS----CCCCCCCHHHHH
T ss_pred cCCCCccCcHHHHHHHHHHHHhcCcccc-cchHHHHHHHHHHHHHHHHH-cCCcCccccccCCC----CCCCCCCHHHHH
Confidence 9999559999999999999999998876 77789999999999999999 99999999874211 001136999999
Q ss_pred HHHHHHhh
Q 010485 478 SKISINKY 485 (509)
Q Consensus 478 ~~Ii~~~~ 485 (509)
|+|+++|.
T Consensus 389 daV~~~l~ 396 (399)
T 1zor_A 389 DEVKKNLE 396 (399)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999984
No 6
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=100.00 E-value=3.1e-109 Score=873.11 Aligned_cols=402 Identities=60% Similarity=0.955 Sum_probs=347.6
Q ss_pred cceeccccEEEEcCCCcHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcc
Q 010485 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (509)
Q Consensus 80 ~ki~~~~~I~vLpGDGIGpEI~~~~~~~l~~~~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~ 159 (509)
+||+|+++|++|||||||||||++++++++.++++|+|+++++|++++++||+++|++++++|+++||+||||++||...
T Consensus 17 ~k~~~~~~I~~l~GDgig~evl~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~et~~ai~~~da~lkGav~tP~~~ 96 (427)
T 2qfy_A 17 SKIKVKQPVVELDGDEMTRIIWDKIKKKLILPYLDVDLKYYDLSVESRDATSDKITQDAAEAIKKYGVGIKCATITPDEA 96 (427)
T ss_dssp CCEECSSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHH
T ss_pred ccccceeeEEEecCCCHHHHHHHHHHHHhccCCCceEEEEEecChHHHhccCCcCcHHHHHHHHHCCEEEECCcCCCCCc
Confidence 59999999999999999999999999999888999999999999999999999999999999999999999999999877
Q ss_pred hhhhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCCCCCCCCEEEEecccCccccccceeecCCCceeeeecCCC-
Q 010485 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED- 238 (509)
Q Consensus 160 ~~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~~~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~- 238 (509)
+++|++|+++|+|+|++|||.||||+|+||++++++|++.++|+.||+|+||+++|+|.+.++.+.++++..+-|.+++
T Consensus 97 ~~~e~~l~~~~~s~~~~lR~~ldlyan~RP~~~~~~~~l~~g~~~pl~i~R~~~g~~y~~~D~vivREnteg~Y~~~e~t 176 (427)
T 2qfy_A 97 RVKEFNLHKMWKSPNGTIRNILGGTVFREPIVIPRIPRLVPRWEKPIIIGRHAHGDQYKATDTLIPGPGSLELVYKPSDP 176 (427)
T ss_dssp HHHHTTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCEEEEEEEECSSGGGGCEEEEECSSEEEEEEEEESCT
T ss_pred ccchhhhcccccchHHHHHHhcCCEEEecccccccchhhccCCCCCeeEeecccCCccCCeeEEEeccCccceeeecccc
Confidence 7778888889999999999999999999999888899888877777777788877777777777665554333333332
Q ss_pred -CCCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchhHHHHHHHHHHHhhhhccC
Q 010485 239 -GTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFE 317 (509)
Q Consensus 239 -g~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~ 317 (509)
|.......+.++++.++...+++|++++|||+|+||+||++|++|||+|||+||||.|||+|+++|+|||+++|.++|+
T Consensus 177 eG~~~~~~~~~~~~~~~v~~~~~~T~~~ieRIar~AFe~A~~r~~kVt~v~KaNVlk~s~glfr~v~~eva~~eYpd~~~ 256 (427)
T 2qfy_A 177 TTAQPQTLKVYDYKGSGVAMAMYNTDESIEGFAHSSFKLAIDKKLNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFE 256 (427)
T ss_dssp TTSCCEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCccccccccccCCCceEEEEEEEcHHHHHHHHHHHHHHHHHhCCceEEEECCccchhhhHHHHHHHHHHHHHhCCCccc
Confidence 3221223333444566776679999999999999999999999999999999999999999999999999559944444
Q ss_pred CCCeeEeeehHHHHHHHHhhCCCccEEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCCcccccc
Q 010485 318 EHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQ 397 (509)
Q Consensus 318 ~PdI~~e~~lVDa~amqlVk~P~~FVIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd~~~~~I 397 (509)
+.+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|||+++..++|||+||||||||+++|
T Consensus 257 ~~~I~~e~~~VD~~amqlV~~P~~FVivt~NlfGDILSD~aA~l~GslGl~pSanig~~~~~~~fEpvHGSAPdi~~~di 336 (427)
T 2qfy_A 257 QLGIHYEHRLIDDMVAQMIKSKGGFIMALKNYDGDVQSDIVAQGFGSLGLMTSILVTPDGKTFESEAAHGTVTRHYRKYQ 336 (427)
T ss_dssp HHTCCEEEEEHHHHHHHHHHSCEEEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSCCEEEECCSCCCHHHHHHHH
T ss_pred CCeEEEEEEEHHHHHHHHHhCCCceEEEECccchHHHHHHHHHhcCcccccceeEeCCCCceeEecCCCCCcccccchhh
Confidence 34499999999999999999999999999999999999999999999999999999987634899999999999988889
Q ss_pred cCCCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhhhhccccccCHHHHH
Q 010485 398 KGQETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQFYYLFLLI 477 (509)
Q Consensus 398 AGk~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~~~~~~~~~T~ef~ 477 (509)
||||++|||+|+|||++|||+|||+.++ |++|.++|++||+||.++|+.+|++|+||||.. |.. ...+.++|+||+
T Consensus 337 AGk~~~ANP~A~IlS~ammL~~lg~~~~-~~~l~~~A~~Ie~Av~~~l~~~G~~T~Dlgg~~-g~~--~~~~~~~T~e~~ 412 (427)
T 2qfy_A 337 KGEETSTNSIASIFAWSRGLLKRGELDN-TPALCKFANILESATLNTVQQDGIMTKDLALAC-GNN--ERSAYVTTEEFL 412 (427)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHT-TCC--SGGGCCCHHHHH
T ss_pred cCCCCccCcHHHHHHHHHHHHHhCcccC-cchhHHHHHHHHHHHHHHHHhCCCccccccccC-Ccc--ccCCCCCHHHHH
Confidence 9999449999999999999999999876 788899999999999999964789999998621 100 001236999999
Q ss_pred HHHHHHhh
Q 010485 478 SKISINKY 485 (509)
Q Consensus 478 ~~Ii~~~~ 485 (509)
|+|+++|.
T Consensus 413 daV~~~l~ 420 (427)
T 2qfy_A 413 DAVEKRLQ 420 (427)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999994
No 7
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=100.00 E-value=6.7e-107 Score=830.91 Aligned_cols=327 Identities=16% Similarity=0.113 Sum_probs=301.7
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchhhhhc
Q 010485 86 NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (509)
Q Consensus 86 ~~I~vLpGDGIGpEI~~~~~~~l~~~~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~~~~e~~ 165 (509)
++|++||||||||||+++++++|.+.+++|+|+++++|+++++++|+++|++++++|+++|++||||++||.+..
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~vl~a~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gav~~P~~~~----- 76 (333)
T 1x0l_A 2 YRICLIEGDGIGHEVIPAARRVLEATGLPLEFVEAEAGWETFERRGTSVPEETVEKILSCHATLFGAATSPTRKV----- 76 (333)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHTTTCCEEEEEECCSHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCCSSCC-----
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEecchHHHHhhCCcCcHHHHHHHHHCCEEEECCccCCCCCC-----
Confidence 579999999999999999999998889999999999999999999999999999999999999999999997421
Q ss_pred ccccCCCCchhHhhhcCceEEeeccccCCCCCCCCCC-CCCEEEEecccCccccccceeecCCCceeeeecCCCCCCcee
Q 010485 166 LKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVE 244 (509)
Q Consensus 166 L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~~-~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~g~~~~~ 244 (509)
.+|+|+|++|||+||||+|+||+ +.+| +.+.+ +.|||||||||||+|+|.++. .+++
T Consensus 77 --~~~~s~~l~lR~~ldlyan~RP~--~~~p-~~s~~~~vD~vivREnteg~Y~g~~~~--~~~~--------------- 134 (333)
T 1x0l_A 77 --PGFFGAIRYLRRRLDLYANVRPA--KSRP-VPGSRPGVDLVIVRENTEGLYVEQERR--YLDV--------------- 134 (333)
T ss_dssp --TTCCCHHHHHHHHTTCCEEEEEE--ECCS-STTCCSSCEEEEEEECGGGTCCCCEEE--ETTE---------------
T ss_pred --cCccChhHHHHHHcCCEEEEEEE--eecc-CCCCCCCCCEEEEecCccceecccccc--CCCe---------------
Confidence 46899999999999999999998 5666 54444 479999999999999998764 1111
Q ss_pred eeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhC-CCCEEEEeCCccccccchhHHHHHHHHHHHhhhhccCCCCeeE
Q 010485 245 LDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWY 323 (509)
Q Consensus 245 ~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~r-kk~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~~PdI~~ 323 (509)
+.++++|||+++|||+|+||+||++| +||||+|||+||||.+||+|+++|+||++ +| |+|++
T Consensus 135 ----------a~~~~~~T~~~~eRiar~AF~~A~~r~rkkvt~v~KaNvlk~t~glf~~~~~eva~-ey------p~I~~ 197 (333)
T 1x0l_A 135 ----------AIADAVISKKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQGLFLDTVKEVAK-DF------PLVNV 197 (333)
T ss_dssp ----------EEEEEEEEHHHHHHHHHHHHHHHHTSTTCEEEEEECTTTCTTHHHHHHHHHHHHHT-TC------TTSEE
T ss_pred ----------EEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEecCccchhhhHHHHHHHHHHHH-HC------CCceE
Confidence 22667899999999999999999999 57899999999999999999999999987 89 99999
Q ss_pred eeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCCcccccccCCCC
Q 010485 324 EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQET 402 (509)
Q Consensus 324 e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd~~~~~IAGk~i 402 (509)
+|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ +||||+|||||| |||||+
T Consensus 198 ~~~~vD~~~m~lv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~psanig~~~--a~fEp~HGSAPd-----iaGk~i 270 (333)
T 1x0l_A 198 QDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVGGLGLAPSGNIGDTT--AVFEPVHGSAPD-----IAGKGI 270 (333)
T ss_dssp EEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCSTTCEEEEECSSC--EEEEESSCCCGG-----GTTSSC
T ss_pred EEEEHHHHHHHHhhCcccceEEEEcCccchhHhHHHHhhcCCcccceeeEECCCc--eEEeCCCCChhh-----hcCCCC
Confidence 9999999999999999999 99999999999999999999999999999999865 899999999999 999998
Q ss_pred CcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhhhhccccccCHHHHHHHHHH
Q 010485 403 STNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQFYYLFLLISKISI 482 (509)
Q Consensus 403 ~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~~~~~~~~~T~ef~~~Ii~ 482 (509)
|||+|+|||++|||+|||+ .++|++||+||.++|+ +|++|+||||+ ++|+||+|+|++
T Consensus 271 -ANP~A~IlS~ammL~~lg~--------~~~A~~Ie~Av~~~l~-~g~~T~DlgG~------------~~T~e~~daV~~ 328 (333)
T 1x0l_A 271 -ANPTAAILSAAMMLDYLGE--------KEAAKRVEKAVDLVLE-RGPRTPDLGGD------------ATTEAFTEAVVE 328 (333)
T ss_dssp -CCCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHH-HSCCCGGGTCC------------CCHHHHHHHHHH
T ss_pred -cCcHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHHHHH-cCCccCccCCC------------CCHHHHHHHHHH
Confidence 9999999999999999996 4579999999999999 99999999887 599999999999
Q ss_pred Hhh
Q 010485 483 NKY 485 (509)
Q Consensus 483 ~~~ 485 (509)
+|.
T Consensus 329 ~l~ 331 (333)
T 1x0l_A 329 ALK 331 (333)
T ss_dssp HHH
T ss_pred HHh
Confidence 984
No 8
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=100.00 E-value=4.3e-106 Score=833.34 Aligned_cols=343 Identities=15% Similarity=0.073 Sum_probs=303.4
Q ss_pred ccccEEEEcCCCcHHHHHHHHHHHHhc----CCCCeEEEEEecch-HHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCc
Q 010485 84 VQNPIVEMDGDEMTRIIWQMIKDKLIF----PYLDLDIKYYDLGI-LNRDATDDKVTVESAEATLKYNVAIKCATITPDE 158 (509)
Q Consensus 84 ~~~~I~vLpGDGIGpEI~~~~~~~l~~----~~~~i~~~~~~~G~-~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~ 158 (509)
|.++|++|||||||||||++++++|.+ .+++|+|+++++|+ +++++||+++|++|+++|+++|++||||++||.+
T Consensus 4 ~~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~P~~ 83 (364)
T 3flk_A 4 HSFRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKMMPDDWAEQLKQYDAIYFGAVGWPDK 83 (364)
T ss_dssp -CEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHSSSSCTTHHHHHTTSSEEEEEECCBTTT
T ss_pred CceEEEEECCCcccHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCcHHHHhccCCcCCHHHHHHHHHCCEEEECCccCccc
Confidence 457899999999999999999988743 27999999999999 9999999999999999999999999999999974
Q ss_pred chhhhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCCCC------CCCCEEEEecccCccccccceeecCCCceee
Q 010485 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPG------WKKPICIGRHAFGDQYRATDTVIKGPGKLKM 232 (509)
Q Consensus 159 ~~~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~------~~~DivIvREnTeG~Y~g~e~~~~~~g~~e~ 232 (509)
++.. ..++|+|++|||+||||||+||+ +.+|++.++ +++|||||||||||+|+|.++... .+
T Consensus 84 --~~~~---~~~~s~~l~LR~~ldlyanvRP~--~~~pg~~splk~~~~~~vD~vivREnteG~Y~g~~~~~~-~~---- 151 (364)
T 3flk_A 84 --VPDH---ISLWGSLLKFRREFDQYVNIRPV--RLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLGGIMF-EN---- 151 (364)
T ss_dssp --BCHH---HHHHTTHHHHHHHTTCCEEEEEE--ECCTTCCCSBTTCCTTSSEEEEEEECSSBTCCCCEEEES-TT----
T ss_pred --CCCC---cCcccchHHHHHHhCCeEEEEEE--eccCCcccccccccCCCCCEEEEeeCCCceecCcCceec-cC----
Confidence 1110 11368999999999999999998 455555332 357999999999999999876531 11
Q ss_pred eecCCCCCCceeeeeeccCCCce-eeeeccChHHHHHHHHHHHHHHHhCCC-CEEEEeCCccccccchhHHHHHHHHHHH
Q 010485 233 VFDPEDGTGPVELDVYNFKGPGI-ALAMYNVDESIRAFAESSMSLAFSKKW-PLYLSTKNTILKKYDGRFKDIFQQVYEE 310 (509)
Q Consensus 233 ~~~~~~g~~~~~~~v~~~~~~~v-~~~~~~Tr~~ieRIar~AFe~A~~rkk-~Vt~v~KaNVlk~tdglf~~i~~eVa~~ 310 (509)
.++++ .++++|||+++|||+|+||+||++|++ +||+|||+||||.++|+|+++|+|||+
T Consensus 152 ------------------~~~~~a~~~~~~T~~~~eRIar~AFe~A~~r~~kkVt~v~KaNvlk~s~glf~~~~~eva~- 212 (364)
T 3flk_A 152 ------------------TENEIVIQESIFTRRGVDRILKYAFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEAMAA- 212 (364)
T ss_dssp ------------------STTCEEEEEEEEEHHHHHHHHHHHHHHHHHSSSCEEEEEECTTTSTTHHHHHHHHHHHHHT-
T ss_pred ------------------CCCCEEEEEEEECHHHHHHHHHHHHHHHHhcCCCeEEEEECcchhhhHHHHHHHHHHHHHH-
Confidence 01122 267889999999999999999999975 699999999999999999999999987
Q ss_pred hhhhccCCCCeeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCC-ceeeecCCcc
Q 010485 311 RWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAHGT 388 (509)
Q Consensus 311 eY~~~f~~PdI~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~-~a~FEp~HGS 388 (509)
+| |+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||++++ ++||||+|||
T Consensus 213 ey------pdv~~~~~~vD~~am~lv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSanig~~~~~~a~fEp~HGS 286 (364)
T 3flk_A 213 HY------PHVSWDKQHIDILCARFVLQPERFDVVVASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVHGS 286 (364)
T ss_dssp TC------TTCEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCSTTCEEEEECTTCSSCEEEEESSCC
T ss_pred HC------CCceEEeeEHHHHHHHHHhCcccCcEEEecccchHHHHHHHHHhcCCcccccccccCCCCCcceEEecCCCC
Confidence 89 999999999999999999999999 999999999999999999999999999999998752 3999999999
Q ss_pred cCCcccccccCCCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhhhhccc
Q 010485 389 VTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDR 468 (509)
Q Consensus 389 APd~~~~~IAGk~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~~~~~ 468 (509)
||| |||||+ |||+|+|||++|||+|||++| +++.++|++||+||.++|+ +|++|+||||.
T Consensus 287 APd-----iAGk~i-ANP~A~IlS~ammL~~lg~~~---~~~~~~A~~Ie~Av~~~l~-~G~~T~Dlgg~---------- 346 (364)
T 3flk_A 287 APD-----IFGKNI-ANPIAMIWSGALMLEFLGQGD---ERYQRAHDDMLNAIERVIA-DGSVTPDMGGT---------- 346 (364)
T ss_dssp CTT-----TTTSSC-CCCHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHH-HTCCCGGGTCC----------
T ss_pred chh-----hcCCCc-cCcHHHHHHHHHHHHHhCccc---chhHHHHHHHHHHHHHHHH-cCCCCcccCCC----------
Confidence 999 999998 999999999999999999654 2357889999999999999 99999999987
Q ss_pred cccCHHHHHHHHHHHhh
Q 010485 469 QFYYLFLLISKISINKY 485 (509)
Q Consensus 469 ~~~~T~ef~~~Ii~~~~ 485 (509)
++|+||+++|+++|.
T Consensus 347 --~~T~e~~~aV~~~l~ 361 (364)
T 3flk_A 347 --LSTQQVGAAISDTLA 361 (364)
T ss_dssp --CCHHHHHHHHHHHHH
T ss_pred --cCHHHHHHHHHHHHh
Confidence 599999999999985
No 9
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=100.00 E-value=8.8e-106 Score=829.29 Aligned_cols=332 Identities=16% Similarity=0.109 Sum_probs=300.7
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHhcC----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchh
Q 010485 86 NPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRM 161 (509)
Q Consensus 86 ~~I~vLpGDGIGpEI~~~~~~~l~~~----~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~~~ 161 (509)
++|++|||||||||||++++++|.+. +++|+|+++++|+++++++|+++|++|+++|+++|++||||++||.+.++
T Consensus 4 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gavg~P~~~~~ 83 (359)
T 2y3z_A 4 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVEEAEAVLLGSVGGPKWDGL 83 (359)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEECCCCCGGGTTS
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCCeEEEEEeccHHHHHhhCCcCCHHHHHHHHHCCEEEEccccCCccccC
Confidence 68999999999999999999888543 78999999999999999999999999999999999999999999987655
Q ss_pred hhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCC--CC------CCCCEEEEecccCccccccceeecCCCceeee
Q 010485 162 KEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV--PG------WKKPICIGRHAFGDQYRATDTVIKGPGKLKMV 233 (509)
Q Consensus 162 ~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~--~~------~~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~ 233 (509)
|+ ++ ++|+| |++|||+||||||+||+ +.+|+++ ++ .+.|||||||||||+|+|.++.. +++
T Consensus 84 ~~-~~-~~~~~-~l~LR~~ldlyanvRP~--~~~pgl~~~splk~~~~~~iD~vivREnteg~Y~g~e~~~-~~~----- 152 (359)
T 2y3z_A 84 PR-KI-RPETG-LLSLRKSQDLFANLRPA--KVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGM-SEA----- 152 (359)
T ss_dssp CG-GG-CHHHH-HHHHHHHTTEEEEEEEE--ECCTTCGGGSSSCHHHHTTCEEEEEEECSCSTTTCSSCEE-CSS-----
T ss_pred Cc-cc-ccchh-HHHHHHHhCCEEEEEEe--eccCCCCCCCCcccccCCCceEEEEecCccceEecCCCcC-CCc-----
Confidence 53 22 35667 99999999999999998 5677763 22 25799999999999999987542 100
Q ss_pred ecCCCCCCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchhHHHHHHHHHHHhhh
Q 010485 234 FDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWR 313 (509)
Q Consensus 234 ~~~~~g~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~ 313 (509)
.+.++++|||+++|||+|+||+||++|++|||+|||+|||| ++|+|+++|+||++ +|
T Consensus 153 --------------------~a~~~~~~T~~~~eRIar~AFe~A~~rrkkVt~v~KaNvlk-~~~lf~~~~~eva~-ey- 209 (359)
T 2y3z_A 153 --------------------EAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLE-VGEFWRKTVEEVGR-GY- 209 (359)
T ss_dssp --------------------CEECCCCCCHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHHT-TC-
T ss_pred --------------------eEEEEEEEcHHHHHHHHHHHHHHHHHcCCeEEEEECCcccc-ccHHHHHHHHHHHH-HC-
Confidence 12266789999999999999999999988999999999999 99999999999996 89
Q ss_pred hccCCCCeeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCCc
Q 010485 314 QKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRH 392 (509)
Q Consensus 314 ~~f~~PdI~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd~ 392 (509)
|+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ +||||+||||||
T Consensus 210 -----pdI~~~~~~VD~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSanig~~~--~~fEpvHGSAPd- 281 (359)
T 2y3z_A 210 -----PDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGT--PVFEPVHGSAPD- 281 (359)
T ss_dssp -----TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHTTTSCGGGCEEEEEESSC--CEEEESSCCCGG-
T ss_pred -----CcEEEEeeEHHHHHHHHhhCcccccEEEEcCcchHHHHHHHHHhcCcccccceeEeCCCC--ceeecCCCChhh-
Confidence 999999999999999999999999 99999999999999999999999999999999876 599999999999
Q ss_pred ccccccCCCCCcChhHHHHHHHHHHHH-hhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhhhhcccccc
Q 010485 393 FRLHQKGQETSTNSIASIFAWTRGLEH-RYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQFY 471 (509)
Q Consensus 393 ~~~~IAGk~i~ANPiA~IlS~amML~h-lG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~~~~~~~~ 471 (509)
|||||+ |||+|+|||++|||+| ||+ .++|++|++||.++|+ +| +|+||||+ +
T Consensus 282 ----iAGk~i-ANP~A~IlS~ammL~~slg~--------~~~A~~Ie~Av~~~l~-~g-~T~Dlgg~------------~ 334 (359)
T 2y3z_A 282 ----IAGKGI-ANPTAAILSAAMMLEHAFGL--------VELARKVEDAVAKALL-ET-PPPDLGGS------------A 334 (359)
T ss_dssp ----GTTSSC-SCTHHHHHHHHHHHHHTTCC--------HHHHHHHHHHHHHHHH-HS-CCGGGTCC------------C
T ss_pred ----hCCCCC-cCCHHHHHHHHHHHHHhcCC--------hHHHHHHHHHHHHHHH-cC-CCCccCCC------------C
Confidence 999998 9999999999999999 996 4579999999999999 89 99999887 5
Q ss_pred CHHHHHHHHHHHhhh
Q 010485 472 YLFLLISKISINKYL 486 (509)
Q Consensus 472 ~T~ef~~~Ii~~~~~ 486 (509)
+|+||+|+|+++|..
T Consensus 335 ~T~e~~daV~~~l~~ 349 (359)
T 2y3z_A 335 GTEAFTATVLRHLAA 349 (359)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999999964
No 10
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=100.00 E-value=4e-105 Score=825.75 Aligned_cols=333 Identities=17% Similarity=0.139 Sum_probs=300.5
Q ss_pred cccEEEEcCCCcHHHHHHHHHHHHhcC----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHh-cCeeeecCCCCCCcc
Q 010485 85 QNPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLK-YNVAIKCATITPDET 159 (509)
Q Consensus 85 ~~~I~vLpGDGIGpEI~~~~~~~l~~~----~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~-~da~lkg~~~tP~~~ 159 (509)
.++|++|||||||||||++++++|.+. +++|+|+++++|++++++||+++|++|+++|++ ||++||||++||.+.
T Consensus 10 ~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~~da~L~Gavg~P~~~ 89 (366)
T 3ty4_A 10 RIVLGLIPADGIGKEVVPAARRLMENLPAKHKLKFDFIDLDAGWGTFERTGKALPERTVERLKTECNAALFGAVQSPTHK 89 (366)
T ss_dssp EEEEEEEEESTTHHHHHHHHHHHHHTCCGGGCCEEEEEECCCSHHHHHHHSCSSCHHHHHHHHHHCSEEEEEECCCCSSC
T ss_pred ceEEEEECCCccCHHHHHHHHHHHHHHHHhcCCceEEEEecchHHHHHhhCCCCCHHHHHHHHHhCCEEEECCccCCCCC
Confidence 478999999999999999999988552 789999999999999999999999999999999 699999999999753
Q ss_pred hhhhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCCCCCCCCEEEEecccCccccccceeecCCCceeeeecCCCC
Q 010485 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (509)
Q Consensus 160 ~~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~~~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~g 239 (509)
. .+|+|+|++|||+||||||+||+ +.+|++.+ .+.|||||||||||+|+|.++.... +
T Consensus 90 ~-------~~~~s~~l~LRk~ldlyaNvRP~--~~~~g~~~-~~vD~vivREnTeG~Y~g~e~~~~~-~----------- 147 (366)
T 3ty4_A 90 V-------AGYSSPIVALRKKMGLYANVRPV--KSLDGAKG-KPVDLVIVRENTECLYVKEERMVQN-T----------- 147 (366)
T ss_dssp C-------TTCCCHHHHHHHHTTCCEEEEEE--ECCTTCSS-SCCEEEEEEECSCBGGGCCEEEEEC-C-----------
T ss_pred C-------cccccchHHHHHHhCCeEEEEEE--eccCCCCC-CCCcEEEEeeCCCCEeecCcceecc-C-----------
Confidence 1 26789999999999999999998 67787732 2589999999999999999876411 0
Q ss_pred CCceeeeeeccCCCc-eeeeeccChHHHHHHHHHHHHHHHhC-------------CCCEEEEeCCccccccchhHHHHHH
Q 010485 240 TGPVELDVYNFKGPG-IALAMYNVDESIRAFAESSMSLAFSK-------------KWPLYLSTKNTILKKYDGRFKDIFQ 305 (509)
Q Consensus 240 ~~~~~~~v~~~~~~~-v~~~~~~Tr~~ieRIar~AFe~A~~r-------------kk~Vt~v~KaNVlk~tdglf~~i~~ 305 (509)
.+++ +.++++|||+++|||+|+||+||++| ++|||+|||+||||.++|+|+++|+
T Consensus 148 -----------~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~~~~~~~~~~rkkVt~v~KaNVl~~s~glf~~~~~ 216 (366)
T 3ty4_A 148 -----------PGKRVAEAIRRISEEASTKIGKMAFEIAKSRQKIRESGTYSIHKKPLVTIIHKSNVMSVTDGLFRESCR 216 (366)
T ss_dssp -----------TTCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCSSCEEEEEECTTTCTTHHHHHHHHHH
T ss_pred -----------CCCceEEEEEEecHHHHHHHHHHHHHHHHhcCccccccccccCCCCeEEEEECCcchHhHHHHHHHHHH
Confidence 0012 22678899999999999999999998 6789999999999999999999999
Q ss_pred HHH--HHhhhhccCCCCeeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceee
Q 010485 306 QVY--EERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEA 382 (509)
Q Consensus 306 eVa--~~eY~~~f~~PdI~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~F 382 (509)
||+ +++| |+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||++ .+||
T Consensus 217 ev~~~a~ey------pdV~~~~~~VD~~am~lv~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~pSanig~~--~a~f 288 (366)
T 3ty4_A 217 HAQSLDPSY------ASINVDEQIVDSMVYRLFREPECFDVVVAPNLYGDILSDGAASLIGSLGLVPSANVGDN--FVMS 288 (366)
T ss_dssp HHGGGCGGG------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHGGGSCGGGCCCEEECSS--CEEE
T ss_pred HHHHhHhhC------CCceEEeeeHHHHHHHHHhCcccCcEEEECccchHHHHHHHHHhcCchhhhcceeeCCC--ceEE
Confidence 993 3489 999999999999999999999999 9999999999999999999999999999999964 5999
Q ss_pred ecCCcccCCcccccccCCCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCC-CcCcccccCcch
Q 010485 383 EAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSI-SLLNDALLSYSW 461 (509)
Q Consensus 383 Ep~HGSAPd~~~~~IAGk~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G-~~T~DLgg~~~~ 461 (509)
||+|||||| |||||+ |||+|+|||++|||+|||+ .++|++|++||.++|+ +| ++|+||||.
T Consensus 289 EpvHGSAPd-----IaGk~i-ANP~A~IlS~amML~~lg~--------~~~A~~Ie~Av~~~l~-~G~~~T~Dlgg~--- 350 (366)
T 3ty4_A 289 EPVHGSAPD-----IAGRGI-ANPVATFRSVALMLEFMGH--------QDAAADIYTAVDKVLT-EGKVLTPDLGGK--- 350 (366)
T ss_dssp CCSSCCCTT-----TTTSSC-CCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHH-HCSSCCGGGTSC---
T ss_pred ecCCCChhh-----cCCCCc-cCcHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHH-cCCccCcccCCC---
Confidence 999999999 999998 9999999999999999996 4579999999999999 88 899999987
Q ss_pred hhhhccccccCHHHHHHHHHHHhh
Q 010485 462 LILLIDRQFYYLFLLISKISINKY 485 (509)
Q Consensus 462 ~~~~~~~~~~~T~ef~~~Ii~~~~ 485 (509)
++|+||+++|+++|.
T Consensus 351 ---------~~T~e~~daV~~~l~ 365 (366)
T 3ty4_A 351 ---------SGTNEITDAVLANIH 365 (366)
T ss_dssp ---------CCHHHHHHHHHHHC-
T ss_pred ---------cCHHHHHHHHHHHhh
Confidence 599999999999874
No 11
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=100.00 E-value=1.9e-105 Score=832.09 Aligned_cols=342 Identities=16% Similarity=0.132 Sum_probs=296.6
Q ss_pred eeccccEEEEcCCCcHHHHHHHHHHHHhcC----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCC
Q 010485 82 VKVQNPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPD 157 (509)
Q Consensus 82 i~~~~~I~vLpGDGIGpEI~~~~~~~l~~~----~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~ 157 (509)
-+|.++|++|||||||||||++++++|.+. +++|+|+++++|+++++++|+++|++|+++|+++|++||||+++|.
T Consensus 20 ~~M~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~g~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~daiL~Gavg~P~ 99 (390)
T 3u1h_A 20 GAMKKKIAVLPGDGIGPEVMEAAIEVLKAVAERFGHEFEFEYGLIGGAAIDEAGTPLPEETLDVCRGSDAILLGAVGGPK 99 (390)
T ss_dssp ----CEEEEEEESTTHHHHHHHHHHHHHHHHHHHSCCCEEEECCCTHHHHHSSSSSSCHHHHHHHHTSSEEEEEECCCST
T ss_pred cCccceEEEECCCccCHHHHHHHHHHHHHHHHhcCCCeEEEEEEcCHHHHHhhCCcCCHHHHHHHHHCCEEEECCcCCCC
Confidence 358899999999999999999999888543 8999999999999999999999999999999999999999999997
Q ss_pred cchhhhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCC--CC------CCCCEEEEecccCccccccceeecCCCc
Q 010485 158 ETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV--PG------WKKPICIGRHAFGDQYRATDTVIKGPGK 229 (509)
Q Consensus 158 ~~~~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~--~~------~~~DivIvREnTeG~Y~g~e~~~~~~g~ 229 (509)
+..++.. ..+.|+|++|||+||||||+||+ +.+|++. ++ .+.|||||||||||+|+|.++....+|.
T Consensus 100 ~~~~~~~---~~~~~~ll~LRk~ldLyANvRP~--k~~pg~~~~splk~~~~~~vD~vIVREnTeG~Y~g~~~~~~~~g~ 174 (390)
T 3u1h_A 100 WDQNPSE---LRPEKGLLGIRKGLDLFANLRPV--KVYDSLADASPLKKEVIEGVDLVIVRELTGGLYFGEPSERYEEGE 174 (390)
T ss_dssp TTSSCCS---SSSSCCHHHHHHHTTEEEEEEEE--ECCGGGTTSSSBCHHHHSSCEEEEEEECSSBSCC-------CTTC
T ss_pred cCCCCcc---cCccchHHHHHHHhCCeEEEEEe--eccCCccccCCcccccccCCcEEEEeeCCCCeecCccccccCCCC
Confidence 6433211 12347899999999999999998 5566553 22 2679999999999999998765321110
Q ss_pred eeeeecCCCCCCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchhHHHHHHHHHH
Q 010485 230 LKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYE 309 (509)
Q Consensus 230 ~e~~~~~~~g~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNVlk~tdglf~~i~~eVa~ 309 (509)
. .+.++++|||+++|||+|+||+||++|++|||+|||+||| .+||+|+++|+||++
T Consensus 175 -----------~------------~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNVl-~t~glfr~~~~eva~ 230 (390)
T 3u1h_A 175 -----------E------------AAVDTLLYTREEIERIIRKAFELALTRKKKVTSVDKANVL-ESSRLWREVAEEVAK 230 (390)
T ss_dssp -----------S------------EEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTC-HHHHHHHHHHHHHHT
T ss_pred -----------c------------eEEEEEEecHHHHhHHHHHHHHHHHHcCCceEEEECCccc-ccchHHHHHHHHHHh
Confidence 0 1236678999999999999999999999999999999999 699999999999987
Q ss_pred HhhhhccCCCCeeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcc
Q 010485 310 ERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGT 388 (509)
Q Consensus 310 ~eY~~~f~~PdI~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGS 388 (509)
+| |||+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ .+||||+|||
T Consensus 231 -eY------PdV~~~~~~VD~~amqLV~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~pSanig~~~-~a~fEpvHGS 302 (390)
T 3u1h_A 231 -EY------PDVELEHMLVDNAAMQLIRNPRQFDVIVTENMFGDILSDEASMITGSLGMLPSASLSTDG-LGLYEPVHGS 302 (390)
T ss_dssp -TC------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHSCTTTCEEEEEETTS-CEEEEESSCC
T ss_pred -HC------CCCeEEeeeHHHHHHHHHhCcccCcEEEecccchHHHHHHHHHhcCchhhcceeeecCCC-CeeEecCCCC
Confidence 89 999999999999999999999999 99999999999999999999999999999999865 6999999999
Q ss_pred cCCcccccccCCCCCcChhHHHHHHHHHHHH-hhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCccc--ccCcchhhhh
Q 010485 389 VTRHFRLHQKGQETSTNSIASIFAWTRGLEH-RYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDA--LLSYSWLILL 465 (509)
Q Consensus 389 APd~~~~~IAGk~i~ANPiA~IlS~amML~h-lG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DL--gg~~~~~~~~ 465 (509)
||| |||||+ |||+|+|||++|||+| ||+ .++|++|++||.++|+ +|++|+|| +|.
T Consensus 303 APD-----IAGk~i-ANP~A~IlS~amML~~~lg~--------~~~A~~Ie~AV~~vl~-~G~~T~Dl~~gG~------- 360 (390)
T 3u1h_A 303 APD-----IAGKGI-ANPLATILSAAMMLRYSFGL--------EEEAKAIEKAVEKVLA-EGYRTADIAKPGG------- 360 (390)
T ss_dssp CTT-----TTTSSC-SCTHHHHHHHHHHHHHHHCC--------HHHHHHHHHHHHHHHH-HTCCBTTTSCSSC-------
T ss_pred hhh-----hcCCCc-CCcHHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHHH-cCCcChhhccCCC-------
Confidence 999 999998 9999999999999999 986 4579999999999999 99999999 442
Q ss_pred ccccccCHHHHHHHHHHHhh
Q 010485 466 IDRQFYYLFLLISKISINKY 485 (509)
Q Consensus 466 ~~~~~~~T~ef~~~Ii~~~~ 485 (509)
+.++|+||+++|+++|.
T Consensus 361 ---~~~~T~e~~daV~~~l~ 377 (390)
T 3u1h_A 361 ---KYVSTTEMTDEVKAAVV 377 (390)
T ss_dssp ---CCBCHHHHHHHHHHHHH
T ss_pred ---CccCHHHHHHHHHHHHh
Confidence 12699999999999996
No 12
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ...
Probab=100.00 E-value=6.8e-105 Score=838.88 Aligned_cols=365 Identities=19% Similarity=0.126 Sum_probs=305.7
Q ss_pred ceecc--ccEEEEcCCCcHHHHHHHHHHHHhcC-------CCCeEEEEEecchHHHhhcCC--CCcHHHHHHHHhcCeee
Q 010485 81 RVKVQ--NPIVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDD--KVTVESAEATLKYNVAI 149 (509)
Q Consensus 81 ki~~~--~~I~vLpGDGIGpEI~~~~~~~l~~~-------~~~i~~~~~~~G~~~~~~tG~--~lp~etleaik~~da~l 149 (509)
|.+|| ++|++|||||||||||++++++|.+. +++|+|+++++|++++++||+ ++|++|+++|+++|++|
T Consensus 30 ~~~vp~~~~I~vipGDGIGpEV~~~a~~Vl~aa~~~~~~~~~~i~~~~~~~G~~a~~~~G~~~~lp~etl~~~k~~da~l 109 (427)
T 3dms_A 30 SLNVSDQPIIPYIEGDGTGFDITPVMIKVVDAAVEKAYGGKKKIHWMEIYAGEKATKVYGPDVWLPEETLQVLKEYVVSI 109 (427)
T ss_dssp CEECCSSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHTCEEE
T ss_pred cEeCCCCCEEEEECCCcccHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCHHHHHhcCCCCCCCHHHHHHHHhcCEEE
Confidence 44555 56999999999999999999887542 379999999999999999999 99999999999999999
Q ss_pred ecCCCCCCcchhhhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCCCC----CCCCEEEEecccCccccccceeec
Q 010485 150 KCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPG----WKKPICIGRHAFGDQYRATDTVIK 225 (509)
Q Consensus 150 kg~~~tP~~~~~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~----~~~DivIvREnTeG~Y~g~e~~~~ 225 (509)
|||++||.+ .+|+|+|++|||+||||||+||+ +.+|++.++ +++|||||||||||+|+|.|++..
T Consensus 110 ~G~~~tP~~---------~~~~s~~l~LRk~LdLyaNlRPv--~~~pg~~splk~~~~vDivIvREnTeG~Y~G~e~~~~ 178 (427)
T 3dms_A 110 KGPLTTPVG---------GGIRSLNVALRQELDLYVCLRPI--QYFKGVPSPVREPEKTNMVIFRENSEDIYAGIEWAAE 178 (427)
T ss_dssp ECCCCCCC-------------CCHHHHHHHHTTCCEEEEEE--CCCTTCCCSSSCGGGCCEEEEEECSSGGGGCCEECTT
T ss_pred ECCCCCCCC---------cccCChhHHHHHHhCCeEEEEEe--ecCCCCCCCCCCCCCceEEEEEECCCCEecCcccccC
Confidence 999999964 45789999999999999999998 455555333 368999999999999999987632
Q ss_pred CCCceee-eec-CCCCCCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchhHHH
Q 010485 226 GPGKLKM-VFD-PEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKD 302 (509)
Q Consensus 226 ~~g~~e~-~~~-~~~g~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rk-k~Vt~v~KaNVlk~tdglf~~ 302 (509)
.+...++ .|. .+.| ++..++.++.+.+.++|||+++|||+|+||+||++|+ ++||+|||+||||.|||+|++
T Consensus 179 ~~~~~~~~~~~~~~~g-----~~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~rkkVT~V~KaNVlk~tdglfr~ 253 (427)
T 3dms_A 179 SEQAKKVIKFLQEEMG-----VKKIRFPQTSGIGIKPVSKEGTERLVRKAIQYAIDNDRKSVTLVHKGNIMKFTEGAFRD 253 (427)
T ss_dssp CHHHHHHHHHHHHTSC-----CCCCSCGGGCCEECCCCCHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHHHH
T ss_pred Cccccccccccccccc-----ccccccCCcceEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhhHHHHH
Confidence 1100000 000 0011 1111122223446778999999999999999999985 689999999999999999999
Q ss_pred HHHHHHHHhhhh-------------ccCCCCeeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccc
Q 010485 303 IFQQVYEERWRQ-------------KFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLM 368 (509)
Q Consensus 303 i~~eVa~~eY~~-------------~f~~PdI~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGla 368 (509)
+|+|||+++|.+ .+++|+|+++|+||||||||||++|++| ||||+|||||||||++|+++|||||+
T Consensus 254 ~~~eva~~eypdv~~~~~~~~~~~~~~~~~~V~~~~~~VD~~amqlv~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~ 333 (427)
T 3dms_A 254 AGYALAQKEFGAELIDGGPWMKFKNPKTGNEIVVKDSIADAFLQQILLRPAEYDVIATLNLNGDYISDALAAQVGGIGIA 333 (427)
T ss_dssp HHHHHHHHHHCCEESTTSSCEEEECTTTCCEEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCTTTC
T ss_pred HHHHHHHHhCCccccccccccccccccccCceEEEEeeHHHHHHHHhhCcccceEEEEcccccHHHHHHHHHhcCCcccc
Confidence 999999867943 1344579999999999999999999999 99999999999999999999999999
Q ss_pred cccccCCCCCceeeecCCcccCCcccccccCCCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhC
Q 010485 369 TSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLS 448 (509)
Q Consensus 369 pSanig~d~~~a~FEp~HGSAPd~~~~~IAGk~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~ 448 (509)
||+|||++ .+||||+|||||| |||||+ |||+|+|||++|||+|||+ .++|++|++||.++|+ +
T Consensus 334 pSanig~~--~a~fEpvHGSAPd-----IAGk~i-ANP~A~IlS~amML~~lg~--------~~~A~~Ie~AV~~vl~-~ 396 (427)
T 3dms_A 334 PGANLSDS--VAMFEATHGTAPK-----YAGKDY-VNPGSEILSAEMMLRHLGW--------TEAADVIISAMEKSIK-Q 396 (427)
T ss_dssp EEEEECSS--CEEEEECSCCCGG-----GTTSSC-SCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHH-H
T ss_pred ceeeeCCC--cceEEeccCChhh-----hcCCCc-CCcHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHHH-c
Confidence 99999965 4999999999999 999998 9999999999999999996 4579999999999999 9
Q ss_pred CCcCcccccCcchhhhhccccccCHHHHHHHHHHHh
Q 010485 449 ISLLNDALLSYSWLILLIDRQFYYLFLLISKISINK 484 (509)
Q Consensus 449 G~~T~DLgg~~~~~~~~~~~~~~~T~ef~~~Ii~~~ 484 (509)
|++|+||||...| .+.++|+||+++|+++|
T Consensus 397 G~~T~Dlgg~~~g------~~~~~T~e~~daV~~~l 426 (427)
T 3dms_A 397 KRVTYDFARLMEG------ATQVSCSGFGQVLIENM 426 (427)
T ss_dssp TEECHHHHTTSSS------CEECCHHHHHHHHHHTT
T ss_pred CCcchhhccccCC------CCccCHHHHHHHHHHhh
Confidence 9999999875322 22479999999999987
No 13
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=100.00 E-value=5.7e-105 Score=817.51 Aligned_cols=328 Identities=18% Similarity=0.158 Sum_probs=302.5
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHhcC----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchh
Q 010485 86 NPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRM 161 (509)
Q Consensus 86 ~~I~vLpGDGIGpEI~~~~~~~l~~~----~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~~~ 161 (509)
++|++||||||||||+++++++|.+. +++|+|+++++|+++++++|+++|++++++|+++|++||||++||.+
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~da~l~Gav~tP~~--- 78 (336)
T 1wpw_A 2 FTVALIQGDGIGPEIVSKSKRILAKINELYSLPIEYIEVEAGDRALARYGEALPKDSLKIIDKADIILKGPVGESAA--- 78 (336)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHHHHHHTTCCEEEEEECCSHHHHHHSSSSSCHHHHHHHHTCSEEEECCCCTTHH---
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhhCCCeEEEEEecchHHHHhhCCcCCHHHHHHHHHCCEEEECCcCCCCc---
Confidence 57999999999999999999888554 89999999999999999999999999999999999999999999952
Q ss_pred hhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCCCCC-CCCEEEEecccCccccccceeecCCCceeeeecCCCCC
Q 010485 162 KEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGT 240 (509)
Q Consensus 162 ~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~~-~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~g~ 240 (509)
. +|++|||+||||+|+||+ +.+|++.+.+ +.||+||||||||+|+|.++... +++
T Consensus 79 ---------~-~~l~lR~~ldlyan~RP~--~~~pg~~~~~~~~D~vivREnteg~Y~g~~~~~~-~~v----------- 134 (336)
T 1wpw_A 79 ---------D-VVVKLRQIYDMYANIRPA--KSIPGIDTKYGNVDILIVRENTEDLYKGFEHIVS-DGV----------- 134 (336)
T ss_dssp ---------H-HHHHHHHTTTCCEEEEEE--ECCTTTCCSCSCCEEEEEEECSSBTTTCCEEEEE-TTE-----------
T ss_pred ---------c-hHHHHHHHhCCEEEEEEE--eccCCCCCCCCCCcEEEEecCccCeEcCCccccC-CCe-----------
Confidence 1 689999999999999998 5778776665 48999999999999999876531 111
Q ss_pred CceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchhHHHHHHHHHHHhhhhccCCCC
Q 010485 241 GPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHS 320 (509)
Q Consensus 241 ~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~~Pd 320 (509)
+.++++|||+++|||+|+||+||++|++|||+|||+||||.|||+|+++|+||++ + +
T Consensus 135 --------------a~~~~~~T~~~~eRiar~AF~~A~~rrkkvt~v~KaNvlk~t~glf~~~~~eva~-~--------~ 191 (336)
T 1wpw_A 135 --------------AVGMKIITRFASERIAKVGLNFALRRRKKVTCVHKANVMRITDGLFAEACRSVLK-G--------K 191 (336)
T ss_dssp --------------EEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCTTHHHHHHHHHHHHHT-T--------T
T ss_pred --------------EEEEEEecHHHHHHHHHHHHHHHHHhCCeEEEEECCcchhhhhHHHHHHHHHHHH-h--------C
Confidence 2266789999999999999999999988999999999999999999999999986 2 7
Q ss_pred eeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCCcccccccC
Q 010485 321 IWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKG 399 (509)
Q Consensus 321 I~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd~~~~~IAG 399 (509)
|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ +||||+|||||| |||
T Consensus 192 I~~~~~~vD~~~~~lv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~--a~fEp~HGSApd-----iaG 264 (336)
T 1wpw_A 192 VEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAGSLGIAPSANIGDKK--ALFEPVHGAAFD-----IAG 264 (336)
T ss_dssp SEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECSSC--EEEEESSCCCTT-----TTT
T ss_pred ceeEEEeHHHHHHHHhhCcccceEEEEcCcchHHHHHHHHHhcCCccccceEEECCCC--ceEeCCCCCchh-----hCC
Confidence 9999999999999999999999 99999999999999999999999999999999865 899999999999 999
Q ss_pred CCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCC-CcCcccccCcchhhhhccccccCHHHHHH
Q 010485 400 QETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSI-SLLNDALLSYSWLILLIDRQFYYLFLLIS 478 (509)
Q Consensus 400 k~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G-~~T~DLgg~~~~~~~~~~~~~~~T~ef~~ 478 (509)
||+ |||+|+|||++|||+|||++|+ |+++.++|++||+||.++|+ +| ++|+||||+ ++|+||+|
T Consensus 265 k~i-ANP~A~IlS~ammL~~lg~~d~-~~~~~~~A~~Ie~Av~~~l~-~g~~~T~DlgG~------------~~T~e~~d 329 (336)
T 1wpw_A 265 KNI-GNPTAFLLSVSMMYERMYELSN-DDRYIKASRALENAIYLVYK-ERKALTPDVGGN------------ATTDDLIN 329 (336)
T ss_dssp SSC-CCTHHHHHHHHHHHHHHHHTTC-CTHHHHHHHHHHHHHHHHHH-HCSSCCGGGTCC------------CCHHHHHH
T ss_pred CCC-cCcHHHHHHHHHHHHHcCcccc-ccchHHHHHHHHHHHHHHHH-cCCccCCccCCC------------CCHHHHHH
Confidence 998 9999999999999999999888 89999999999999999999 88 799999887 59999999
Q ss_pred HHHHHhh
Q 010485 479 KISINKY 485 (509)
Q Consensus 479 ~Ii~~~~ 485 (509)
+|+++|+
T Consensus 330 av~~~l~ 336 (336)
T 1wpw_A 330 EIYNKLG 336 (336)
T ss_dssp HHHHSCC
T ss_pred HHHHhhC
Confidence 9999873
No 14
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1
Probab=100.00 E-value=1.4e-105 Score=843.35 Aligned_cols=370 Identities=19% Similarity=0.156 Sum_probs=309.7
Q ss_pred cceeccc--cEEEEcCCCcHHHHHHHHHHHHhcC-------CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeee
Q 010485 80 DRVKVQN--PIVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIK 150 (509)
Q Consensus 80 ~ki~~~~--~I~vLpGDGIGpEI~~~~~~~l~~~-------~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lk 150 (509)
.|++||+ +|++|||||||||||++++++|.+. +++|+|+++++|.+++++||+++|++|+++|+++|++||
T Consensus 12 ~~~~vp~~~~I~vipGDGIGpEI~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~lk 91 (423)
T 1hqs_A 12 GVLNVPNNPIIPFIEGDGTGPDIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWLPAETLDVIREYFIAIK 91 (423)
T ss_dssp TEEECCSSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEEE
T ss_pred CeEeCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCHHHHHhhCCcCcHHHHHHHHHCCEEEE
Confidence 4677774 5999999999999999999877432 389999999999999999999999999999999999999
Q ss_pred cCCCCCCcchhhhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCCCCC----CCCEEEEecccCccccccceeecC
Q 010485 151 CATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVIKG 226 (509)
Q Consensus 151 g~~~tP~~~~~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~~----~~DivIvREnTeG~Y~g~e~~~~~ 226 (509)
||++||.. ++|+|+|++|||+||||+|+||++ .+|++.+++ ++|||||||||||+|+|.++.. +
T Consensus 92 Gav~tP~~---------~~~~s~nl~LRk~LdlyanvRPv~--~~pg~~splk~~~~vDivIvREnteg~Y~G~e~~~-g 159 (423)
T 1hqs_A 92 GPLTTPVG---------GGIRSLNVALRQELDLFVCLRPVR--YFTGVPSPVKRPEDTDMVIFRENTEDIYAGIEYAK-G 159 (423)
T ss_dssp CCCCCCSS---------SSSCCHHHHHHHHTTCCEEEEEEE--CCTTCCCSBSCGGGCEEEEEEECSCGGGGCCEECT-T
T ss_pred CCccCCCC---------cCcCChhHHHHHHcCCEEEEEEEe--ccCCCCCCCCCCCCCcEEEEecCCCCeeccccccc-C
Confidence 99999953 578999999999999999999984 556554433 5799999999999999998752 2
Q ss_pred CCceeeeecCCCCCCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhC-CCCEEEEeCCccccccchhHHHHHH
Q 010485 227 PGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQ 305 (509)
Q Consensus 227 ~g~~e~~~~~~~g~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~r-kk~Vt~v~KaNVlk~tdglf~~i~~ 305 (509)
.+..+.++... + +...++.+++++..+...++||++++|||+|+||+||++| +++||+|||+||||.|+|+|+++|+
T Consensus 160 ~~~~~~v~~~~-~-~~~~~~~~~~~~~~a~~~~~~T~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~t~Glf~~~~~ 237 (423)
T 1hqs_A 160 SEEVQKLISFL-Q-NELNVNKIRFPETSGIGIKPVSEEGTSRLVRAAIDYAIEHGRKSVTLVHKGNIMKFTEGAFKNWGY 237 (423)
T ss_dssp CHHHHHHHHHH-H-HHSCCCCCSCGGGEEEEEEEEEHHHHHHHHHHHHHHHHHHTCSEEEEEECTTTSTTTHHHHHHHHH
T ss_pred Cccccceeccc-c-ccccccccccCCceEEEEEEEcHHHHHHHHHHHHHHHHHcCCCcEEEEECCccchhhhHHHHHHHH
Confidence 22111100000 0 0011222333433344778999999999999999999988 5789999999999999999999999
Q ss_pred HHHHHhhhhcc--------------------------CCCCeeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHh
Q 010485 306 QVYEERWRQKF--------------------------EEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLL 358 (509)
Q Consensus 306 eVa~~eY~~~f--------------------------~~PdI~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDla 358 (509)
|||+++|.++. ++.+|+++|+|||+||||||++|++| ||||+|||||||||++
T Consensus 238 eva~~eypd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~a 317 (423)
T 1hqs_A 238 ELAEKEYGDKVFTWAQYDRIAEEQGKDAANKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDAL 317 (423)
T ss_dssp HHHHHHHGGGEEEHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHH
T ss_pred HHHHHhCCCcccchhhhccccccccccccccccccccccCeEEEEEeeHHHHHHHHhhCCCCccEEEECCcchHHHHHHH
Confidence 99977892210 11129999999999999999999999 9999999999999999
Q ss_pred hhhcCCcccccccccCCCCCceeeecCCcccCCcccccccCCCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHH
Q 010485 359 AQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFP 438 (509)
Q Consensus 359 A~l~GsLGlapSanig~d~~~a~FEp~HGSAPd~~~~~IAGk~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie 438 (509)
|+++|||||+||+|||++...+||||+|||||| |||||+ |||+|+|||++|||+|||+ .++|++|+
T Consensus 318 A~l~GslGl~pSanigp~~~~alfEp~HGSAPd-----iAGk~i-ANP~A~IlS~amML~hlg~--------~~~A~~Ie 383 (423)
T 1hqs_A 318 AAQVGGIGIAPGANINYETGHAIFEATHGTAPK-----YAGLDK-VNPSSVILSGVLLLEHLGW--------NEAADLVI 383 (423)
T ss_dssp HHHTTCTTTCEEEEECTTTCCEEEEESCCCCGG-----GTTTTC-SCCHHHHHHHHHHHHHHTC--------HHHHHHHH
T ss_pred HhhcCCcccCccceecCCCCceEEecCCCChhh-----hCCCCC-cCcHHHHHHHHHHHHHcCC--------HHHHHHHH
Confidence 999999999999999952225999999999999 999998 9999999999999999996 45699999
Q ss_pred HHHHHHHhhCCCcCcccccCcchhhhhccccccCHHHHHHHHHHHh
Q 010485 439 TISILNIYLSISLLNDALLSYSWLILLIDRQFYYLFLLISKISINK 484 (509)
Q Consensus 439 ~AV~~vl~~~G~~T~DLgg~~~~~~~~~~~~~~~T~ef~~~Ii~~~ 484 (509)
+||.++|+ +|++|+||+|.+.| ++.++|+||+++|+++|
T Consensus 384 ~Av~~~l~-~g~~T~Dl~g~~~g------~~~~~T~e~~daV~~~l 422 (423)
T 1hqs_A 384 KSMEKTIA-SKVVTYDFARLMDG------ATEVKCSEFGEELIKNM 422 (423)
T ss_dssp HHHHHHHH-TTEECHHHHTTSSS------CEECCHHHHHHHHHHTC
T ss_pred HHHHHHHH-cCCcccccccccCC------CCCcCHHHHHHHHHHhh
Confidence 99999999 99999999885333 22379999999999986
No 15
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*
Probab=100.00 E-value=3.1e-105 Score=838.03 Aligned_cols=360 Identities=18% Similarity=0.150 Sum_probs=302.5
Q ss_pred cceeccc--cEEEEcCCCcHHHHHHHHHHHHhcC-------CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeee
Q 010485 80 DRVKVQN--PIVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIK 150 (509)
Q Consensus 80 ~ki~~~~--~I~vLpGDGIGpEI~~~~~~~l~~~-------~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lk 150 (509)
.|++||+ +|++|||||||||||++++++|.+. +++|+|+++++|++++++||+++|++|+++|+++|++||
T Consensus 17 ~~~~vp~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~Lk 96 (409)
T 2e0c_A 17 GKWIVPNKPVILYIEGDGIGPEITNAAIKVINKAVERAYGSSREIKWLEVYAGEKAEKLVNDRFPKETQEMLLKYRVVLK 96 (409)
T ss_dssp SCEECCSSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEEE
T ss_pred CeEecCCCceEeeCCCCCcCHHHHHHHHHHHHHHHHhhcCCCCceEEEEEechHHHHHhhCCcCCHHHHHHHHHCCEEEE
Confidence 5778875 6999999999999999999887443 389999999999999999999999999999999999999
Q ss_pred cCCCCCCcchhhhhcccccCCCCchhHhhhcCceEEeecccc-CCCCCCCCCC-CCCEEEEecccCccccccceeecCCC
Q 010485 151 CATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILC-QNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPG 228 (509)
Q Consensus 151 g~~~tP~~~~~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~-k~lp~l~~~~-~~DivIvREnTeG~Y~g~e~~~~~~g 228 (509)
||++||.. ++|+|+|++|||+||||||+||++. +++|++.+.+ +.|||||||||||+|+|.++....++
T Consensus 97 Gav~tP~~---------~~~~s~~l~LR~~LdlyanvRPv~~~~g~~splk~~~~vDivIvREnteg~Y~g~e~~~~~~~ 167 (409)
T 2e0c_A 97 GPLETPIG---------KGWKSVNVAIRLMLDLYANIRPVKYIEGLESPLKHPEKVDMIIFRENTDDLYRGIEYPFNSEE 167 (409)
T ss_dssp CCCC-----------------CHHHHHHHHTTCCEEEEEEECCTTCCCSBSCCTTCEEEEEEECSSGGGGCCEECTTSHH
T ss_pred CCccCCCc---------ccccChhHHHHHHcCCEEEEEEEeccCCCCCCCCCccCCcEEEEEcCCCCEeCCcccccCCCc
Confidence 99999953 4689999999999999999999863 4454333323 47999999999999999987532111
Q ss_pred ceee-eecCCCCCCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchhHHHHHHH
Q 010485 229 KLKM-VFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQ 306 (509)
Q Consensus 229 ~~e~-~~~~~~g~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rk-k~Vt~v~KaNVlk~tdglf~~i~~e 306 (509)
..++ .|.+++ .. +++++..+..+++||++++|||+|+||+||++|+ ++||+|||+||||.|+|+|+++|+|
T Consensus 168 ~~~v~~f~~~~------~~-~~~~~~~a~~~~~~t~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~sdglf~~~~~e 240 (409)
T 2e0c_A 168 AKKIRDFLRKE------LK-VEIEDDTGIGIKVMSKYKTQRITRLAIQYAIEHKRKKVTIMHKGNVMKYTEGAFREWAYE 240 (409)
T ss_dssp HHHHHHHHHHH------SC-CCCCSSEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTSTTTHHHHHHHHHH
T ss_pred ccchhhccchh------cc-ccCCCceEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECccchhhhhhHHHHHHHH
Confidence 1111 011110 00 1122223347778999999999999999999985 5799999999999999999999999
Q ss_pred HHHHhhhhccCCCC-----------------eeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccc
Q 010485 307 VYEERWRQKFEEHS-----------------IWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLM 368 (509)
Q Consensus 307 Va~~eY~~~f~~Pd-----------------I~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGla 368 (509)
||+++| |+ |+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+
T Consensus 241 va~~ey------pd~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~ 314 (409)
T 2e0c_A 241 VALKEY------RDFIVTEEEINQGKPDQGKIILNDRIADNMFQQIIIRPEEYDIILAPNVNGDYISDAAGALIGNIGML 314 (409)
T ss_dssp HHHHHS------TTTEEEHHHHTTTCCCTTSEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGC
T ss_pred HHHHhC------CCccccccccccccccCCeEEEEEEEHHHHHHHHhhCcccccEEEECCcchHHHHHHHHHhcCCcccC
Confidence 997789 77 9999999999999999999999 99999999999999999999999999
Q ss_pred cccccCCCCCceeeecCCcccCCcccccccCCCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhC
Q 010485 369 TSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLS 448 (509)
Q Consensus 369 pSanig~d~~~a~FEp~HGSAPd~~~~~IAGk~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~ 448 (509)
||+|||++ .+||||+|||||| |||||+ |||+|+|||++|||+|||+ .++|++|++||.++|+ +
T Consensus 315 pSanig~~--~a~fEp~HGSAPd-----iAGk~i-ANP~A~IlS~ammL~~lg~--------~~~A~~Ie~Av~~~l~-~ 377 (409)
T 2e0c_A 315 GGANIGDE--GGMFEAIHGTAPK-----YAGKNV-ANPTGIIKAGELMLRWMGW--------NEAADLIEKAINMAIR-D 377 (409)
T ss_dssp EEEEEETT--EEEEEESSCCCGG-----GTTTTC-SCTHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHH-T
T ss_pred ceEEECCC--ceEEecCCCChhh-----hcCCcc-cCcHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHHH-c
Confidence 99999964 5899999999999 999998 9999999999999999997 4569999999999999 9
Q ss_pred CCcCcccccCcchhhhhccccccCHHHHHHHHHHHhh
Q 010485 449 ISLLNDALLSYSWLILLIDRQFYYLFLLISKISINKY 485 (509)
Q Consensus 449 G~~T~DLgg~~~~~~~~~~~~~~~T~ef~~~Ii~~~~ 485 (509)
|++|+||+|.. | ++.++|+||+++|+++|.
T Consensus 378 g~~T~Dl~g~~-g------~~~~~T~e~~daV~~~l~ 407 (409)
T 2e0c_A 378 KKVTQDIARFM-G------VKALGTKEYADELIKIMD 407 (409)
T ss_dssp TCCCHHHHHHH-T------SCCCCHHHHHHHHHHHHT
T ss_pred CCccccccccC-C------CCCcCHHHHHHHHHHHHh
Confidence 99999998631 1 223799999999999984
No 16
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=100.00 E-value=5.5e-105 Score=826.88 Aligned_cols=345 Identities=18% Similarity=0.135 Sum_probs=301.5
Q ss_pred cccEEEEcCCCcHHHHHHHHHHHHhc----CCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcch
Q 010485 85 QNPIVEMDGDEMTRIIWQMIKDKLIF----PYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (509)
Q Consensus 85 ~~~I~vLpGDGIGpEI~~~~~~~l~~----~~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~~ 160 (509)
.++|++|||||||||||++++++|.+ .+++|+|+++++|+++++++|+++|++|+++|+++|++||||++||.+..
T Consensus 13 ~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~g~~~~~~~~~~G~~~~~~~G~~lp~etl~~~~~~da~L~Gavg~P~~~~ 92 (375)
T 3vmk_A 13 SYQIAVLAGDGIGPEVMAEARKVLAAVEKRFDLSIEYSEYDVGGAAIDNHGCPLPEATLKGCEAADAVLFGSVGGPKWEH 92 (375)
T ss_dssp CEEEEEEEESTTHHHHHHHHHHHHHHHHHHTTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGTT
T ss_pred cceEEEECCCcccHHHHHHHHHHHHHHHHhcCCCEEEEEEECCHHHHHhhCCcCCHHHHHHHHHCCeEEECCcCCCCccC
Confidence 37899999999999999999988744 27999999999999999999999999999999999999999999997643
Q ss_pred hhhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCC---C------CCCCCEEEEecccCccccccceeecCCCcee
Q 010485 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV---P------GWKKPICIGRHAFGDQYRATDTVIKGPGKLK 231 (509)
Q Consensus 161 ~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~---~------~~~~DivIvREnTeG~Y~g~e~~~~~~g~~e 231 (509)
++. ....|+++|++|||+||||||+||++ .+|++. | .+++|||||||||||+|+|.++.....
T Consensus 93 ~~~--~~~~~~~~~l~LRk~ldLyaNvRP~~--~~pg~~~~splk~~~~~~~vD~vIvREnTeG~Y~g~~~~~~~~---- 164 (375)
T 3vmk_A 93 LPP--NDQPERGALLPLRGHFELFCNMRPAK--LHPGLEHMSPLRSDISEKGFDILCVRELTGGIYFGKPKGRQGE---- 164 (375)
T ss_dssp SCS--TTSHHHHHHHHHHHHTTCCEEEEEEE--CCTTCGGGSSBCHHHHTTCCEEEEEEECSSBTTTCSSCEEECC----
T ss_pred CCc--cccccccchHHHHHHcCCeEEEEEEe--ccCCCcccCCCCcccccCCCCEEEEeeCCCCEecCCccccccC----
Confidence 321 12345667899999999999999984 455542 2 247899999999999999986543110
Q ss_pred eeecCCCCCCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchhHHHHHHHHHHHh
Q 010485 232 MVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEER 311 (509)
Q Consensus 232 ~~~~~~~g~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNVlk~tdglf~~i~~eVa~~e 311 (509)
.+ . ..+.++++|||+++|||+|+||+||++|++|||+|||+|||| ++|+|+++|+|||+ +
T Consensus 165 ------~~-~-----------~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNvl~-~~glf~~~~~eva~-e 224 (375)
T 3vmk_A 165 ------GE-N-----------EEAFDTMRYSRKEIRRIAKIAFESAQGRRKKVTSVDKANVLA-CSVLWREVVEEVAK-D 224 (375)
T ss_dssp ------GG-G-----------CEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHHT-T
T ss_pred ------CC-C-----------ceEEEEEEEcHHHHHHHHHHHHHHHHHcCCcEEEEECchhhh-hhhHHHHHHHHHHH-H
Confidence 00 0 012367889999999999999999999999999999999998 77999999999988 8
Q ss_pred hhhccCCCCeeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccC
Q 010485 312 WRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVT 390 (509)
Q Consensus 312 Y~~~f~~PdI~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAP 390 (509)
| |||+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ .+||||+|||||
T Consensus 225 y------pdV~~~~~~VD~~am~lv~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~pSanig~~~-~a~fEpvHGSAP 297 (375)
T 3vmk_A 225 Y------PDVELEHIYIDNATMQLLRRPNEFDVMLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQG-FGMYEPAGGSAP 297 (375)
T ss_dssp C------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTS-CEEEEESSCCCT
T ss_pred C------CCceEeeeeHHHHHHHHHhCcccCcEEEECchhHHHHHHHHHHhcCCccccceeeeCCCC-ceEEecCCCCch
Confidence 9 999999999999999999999999 99999999999999999999999999999999875 599999999999
Q ss_pred CcccccccCCCCCcChhHHHHHHHHHHHH-hhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhhhhcccc
Q 010485 391 RHFRLHQKGQETSTNSIASIFAWTRGLEH-RYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQ 469 (509)
Q Consensus 391 d~~~~~IAGk~i~ANPiA~IlS~amML~h-lG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~~~~~~ 469 (509)
| |||||+ |||+|+|||++|||+| ||+ .++|++|++||.++|+ +|++|+||+|...| .+
T Consensus 298 d-----IAGk~i-ANP~A~IlS~amML~~~lg~--------~~~A~~Ie~AV~~~l~-~G~~T~Dl~g~~~G------~~ 356 (375)
T 3vmk_A 298 D-----IAGQGI-ANPVAQILSAALLLRHSLKL--------EDAALAIEAAVSKALS-DGYLTCELLPASER------SQ 356 (375)
T ss_dssp T-----TTTSSC-SCCHHHHHHHHHHHHHTTCC--------HHHHHHHHHHHHHHHH-TTCCCGGGSCGGGG------GG
T ss_pred h-----ccCCCc-cCcHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHH-cCCCCchhccCCCC------CC
Confidence 9 999999 9999999999999999 996 4579999999999999 99999999542111 12
Q ss_pred ccCHHHHHHHHHHHhh
Q 010485 470 FYYLFLLISKISINKY 485 (509)
Q Consensus 470 ~~~T~ef~~~Ii~~~~ 485 (509)
.++|+||+++|+++|.
T Consensus 357 ~~~T~e~~~aV~~~l~ 372 (375)
T 3vmk_A 357 AKSTSQMGDYIAQAIA 372 (375)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHh
Confidence 3799999999999984
No 17
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=100.00 E-value=3.1e-105 Score=825.31 Aligned_cols=335 Identities=17% Similarity=0.105 Sum_probs=298.2
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHhcC----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchh
Q 010485 86 NPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRM 161 (509)
Q Consensus 86 ~~I~vLpGDGIGpEI~~~~~~~l~~~----~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~~~ 161 (509)
++|++|||||||||||++++++|.+. +++|+|+++++|+++++++|+++|++|+++|+++|++||||+++|.+..+
T Consensus 7 ~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~P~~~~~ 86 (361)
T 3udu_A 7 YKVAVLAGDGIGPLVMKEALKILTFIAQKYNFSFELNEAKIGGASIDAYGVALSDETLKLCEQSDAILFGSVGGPKWDNL 86 (361)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGTTS
T ss_pred eeEEEECCCccCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccHHHHHhhCCcCCHHHHHHHHHCCcEEECCcCCCCcCCC
Confidence 68999999999999999999887542 79999999999999999999999999999999999999999999975433
Q ss_pred hhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCC------C---CCCCCEEEEecccCccccccceeecCCCceee
Q 010485 162 KEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV------P---GWKKPICIGRHAFGDQYRATDTVIKGPGKLKM 232 (509)
Q Consensus 162 ~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~------~---~~~~DivIvREnTeG~Y~g~e~~~~~~g~~e~ 232 (509)
+.. ...|.++|++|||+||||||+||+ +.+|++. + ..+.|||||||||||+|+|.++.. .+
T Consensus 87 ~~~--~~~~~~~~l~LRk~ldLyaNvRP~--~~~pg~~~~splk~~~~~~~vD~vivREnTeG~Y~g~~~~~--~~---- 156 (361)
T 3udu_A 87 PID--QRPERASLLPLRKHFNLFANLRPC--KIYESLTHASPLKNEIIQKGVDILCVRELTGGIYFGKQDLG--KE---- 156 (361)
T ss_dssp CGG--GSHHHHHHHHHHHHHTCCEEEEEE--ECCGGGGGGSSBCHHHHTTCCEEEEEEECSSGGGTSCEEEC--SS----
T ss_pred CCC--cCccccchHHHHHHcCCEEEEEEe--eccCCccccCCCccccccCCCcEEEEcccCCCeecCccCCc--Cc----
Confidence 211 122334589999999999999998 4555542 1 236799999999999999986542 10
Q ss_pred eecCCCCCCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchhHHHHHHHHHHHhh
Q 010485 233 VFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERW 312 (509)
Q Consensus 233 ~~~~~~g~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY 312 (509)
.+.++++|||+++|||+|+||+||++|++|||+|||+|||+ ++|+|+++|+||++ +|
T Consensus 157 ---------------------~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNvl~-t~glf~~~~~eva~-ey 213 (361)
T 3udu_A 157 ---------------------SAYDTEIYTKKEIERIARIAFESARIRKKKVHLIDKANVLA-SSILWREVVANVAK-DY 213 (361)
T ss_dssp ---------------------EEEEEEEEEHHHHHHHHHHHHHHHHHTTSEEEEEECTTTCH-HHHHHHHHHHHHGG-GC
T ss_pred ---------------------eEEEEEeccHHHHHHHHHHHHHHHHHcCCcEEEEECchhhc-cchHHHHHHHHHHH-HC
Confidence 12256779999999999999999999999999999999996 99999999999987 89
Q ss_pred hhccCCCCeeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCC
Q 010485 313 RQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTR 391 (509)
Q Consensus 313 ~~~f~~PdI~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd 391 (509)
|+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ ++||||+||||||
T Consensus 214 ------pdV~~~~~~VD~~am~lv~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~pSanig~~~-~a~fEpvHGSAPd 286 (361)
T 3udu_A 214 ------QDINLEYMYVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLLSSASLNDKG-FGLYEPAGGSAPD 286 (361)
T ss_dssp ------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHCCGGGCEEEEECTTS-CEEEEESSCCCGG
T ss_pred ------CCCeEEeeeHHHHHHHHHhCcccCcEEEecchhHHHHHHHHHHhcCchhhcceeeeCCCC-CeeeecCCCChhh
Confidence 999999999999999999999999 99999999999999999999999999999999876 6999999999999
Q ss_pred cccccccCCCCCcChhHHHHHHHHHHHH-hhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhhhhccccc
Q 010485 392 HFRLHQKGQETSTNSIASIFAWTRGLEH-RYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQF 470 (509)
Q Consensus 392 ~~~~~IAGk~i~ANPiA~IlS~amML~h-lG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~~~~~~~ 470 (509)
|||||+ |||+|+|||++|||+| ||+ .++|++|++||.++|+ +|++|+||||. +.
T Consensus 287 -----IAGk~i-ANP~A~IlS~amML~~~lg~--------~~~A~~Ie~Av~~~l~-~g~~T~DlgG~----------~~ 341 (361)
T 3udu_A 287 -----IAHLNI-ANPIAQILSAALMLKYSFKE--------EQAAQDIENAISLALA-QGKMTKDLNAK----------SY 341 (361)
T ss_dssp -----GTTSSC-CCCHHHHHHHHHHHHHTSCC--------HHHHHHHHHHHHHHHH-TTCCCTTTCSS----------SC
T ss_pred -----hcCCCc-cCCHHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHHH-cCCcCcCCCCC----------Cc
Confidence 999999 9999999999999999 986 4579999999999999 99999999983 12
Q ss_pred cCHHHHHHHHHHHhh
Q 010485 471 YYLFLLISKISINKY 485 (509)
Q Consensus 471 ~~T~ef~~~Ii~~~~ 485 (509)
++|+||+++|+++|.
T Consensus 342 ~~T~e~~~aV~~~l~ 356 (361)
T 3udu_A 342 LNTDEMGDCILEILK 356 (361)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 699999999999985
No 18
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans}
Probab=100.00 E-value=1.2e-104 Score=836.89 Aligned_cols=363 Identities=20% Similarity=0.139 Sum_probs=309.0
Q ss_pred cceeccc--cEEEEcCCCcHHHHHHHHHHHHhcC-------CCCeEEEEEecchHHHhhcCC--CCcHHHHHHHHhcCee
Q 010485 80 DRVKVQN--PIVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDD--KVTVESAEATLKYNVA 148 (509)
Q Consensus 80 ~ki~~~~--~I~vLpGDGIGpEI~~~~~~~l~~~-------~~~i~~~~~~~G~~~~~~tG~--~lp~etleaik~~da~ 148 (509)
.|+.||+ +|++|||||||||||++++++|.+. +++|+|+++++|.++++++|+ ++|++|+++|+++|++
T Consensus 19 ~~~~vp~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~etl~~~k~~da~ 98 (429)
T 2d4v_A 19 GVLQVPDQPIIPFIEGDGIGCDVTPAMRSVVDAAVAKVYGGQRQIAWMELFAGQKAVQLYGEGQYLPDETMAAIREYKVA 98 (429)
T ss_dssp TEEECCSSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHHCEE
T ss_pred CeEEcCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHhhcCCCCceEEEEEeeehhhhhccCCCCCCcHHHHHHHHHCCEE
Confidence 4677774 5999999999999999999887432 389999999999999999999 9999999999999999
Q ss_pred eecCCCCCCcchhhhhcccccCCCCchhHhhhcCceEEeecccc-CCCCCCCCCC-CCCEEEEecccCccccccceeecC
Q 010485 149 IKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILC-QNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKG 226 (509)
Q Consensus 149 lkg~~~tP~~~~~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~-k~lp~l~~~~-~~DivIvREnTeG~Y~g~e~~~~~ 226 (509)
||||++||.. ++|+|+|++|||+||||||+||+++ +++|++.+.+ ++|||||||||||+|+|.++....
T Consensus 99 lkGav~tP~~---------~~~~s~~l~LRk~LdLyanvRPv~~~~gv~splk~~~~vDivIvREnTeg~Y~G~e~~~~~ 169 (429)
T 2d4v_A 99 IKGPLETPVG---------GGIRSLNVAMRQDLDLYVCLRPVRYFEGTPSPMRHPEKVDMVIFRENSEDIYAGIEWPAGS 169 (429)
T ss_dssp EECCCCCCSS---------SSSCCHHHHHHHHTTCCEEEEEEECCTTCCCSBSCGGGCEEEEEEECSCGGGGCCEECTTC
T ss_pred EECCccCCCc---------ccccChhHHHHHHcCCEEEEEEEEecCCCCCCCCCcCCCCEEEEEeCCCCeecCcccccCC
Confidence 9999999953 4689999999999999999999853 4444332222 579999999999999999876322
Q ss_pred CCceee-eecCCCCCCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchhHHHHH
Q 010485 227 PGKLKM-VFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIF 304 (509)
Q Consensus 227 ~g~~e~-~~~~~~g~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rk-k~Vt~v~KaNVlk~tdglf~~i~ 304 (509)
++..++ .|.+++. .++.++|++..+....+||++++|||+|+||+||++|+ ++||+|||+||||.|+|+|+++|
T Consensus 170 ~~~~~v~~~~~~~~----~~~~~~~~~~~a~~~~~~T~~~~eRIar~AFe~A~~r~rkkVT~v~KaNVlk~tdGlf~~~~ 245 (429)
T 2d4v_A 170 PEAEKIIRFLREEM----GVTKIRFPDSSAIGIKPVSTEGSERLIRRTIQYALEHGKPSVSLVHKGNIMKFTEGGFRDWG 245 (429)
T ss_dssp HHHHHHHHHHHHTS----CCCCCSCGGGEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHHHHHH
T ss_pred cccccceecccccc----ccccccCCCceEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhhHHHHHHH
Confidence 111111 1221111 12223344333447778999999999999999999985 57999999999999999999999
Q ss_pred HHHHHHhhhhccCCCC--------------------------------eeEeeehHHHHHHHHhhCCCcc-EEEeCCcch
Q 010485 305 QQVYEERWRQKFEEHS--------------------------------IWYEHRLIDDMVAYAIKSEGGY-VWACKNYDG 351 (509)
Q Consensus 305 ~eVa~~eY~~~f~~Pd--------------------------------I~~e~~lVDa~amqlVk~P~~F-VIVt~NLfG 351 (509)
+|||+++| |+ |+++|+|||+||||||++|++| ||||+||||
T Consensus 246 ~eva~~ey------pd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~fDVivt~NlfG 319 (429)
T 2d4v_A 246 YALAEREF------AGRVFTWRQKAAISKAEGKAAGQKAEQQAIADGKLIIKDVIADNFLQQILLRPEDYSVVATLNLNG 319 (429)
T ss_dssp HHHHHHHS------TTTEEEHHHHHHHHHHHCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHH
T ss_pred HHHHHHhC------CCccccccccccccccccccccchhccccccCCeeEEEEeeHHHHHHHHhhCcccCcEEEECCccc
Confidence 99997789 77 9999999999999999999999 999999999
Q ss_pred hhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCCcccccccCCCCCcChhHHHHHHHHHHHHhhhhhhhhhhHH
Q 010485 352 DVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYMLVCAKLRLF 431 (509)
Q Consensus 352 DILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd~~~~~IAGk~i~ANPiA~IlS~amML~hlG~~d~~~~~l~ 431 (509)
|||||++|+++|||||+||+|||++ .+||||+|||||| |||||+ |||+|+|||++|||+|||+ .
T Consensus 320 DILSD~aA~l~GslGl~pSanig~~--~a~fEpvHGSAPd-----iAGk~i-ANP~A~IlS~amML~hlg~--------~ 383 (429)
T 2d4v_A 320 DYVSDALAAEVGGIGMAPGANLSDT--HAIFEATHGTAPD-----IAGQGK-ANPSSLILSAVMMLEHLGW--------G 383 (429)
T ss_dssp HHHHHHHHHHTTCGGGCCCEEECSS--CEEEECSCCCCTT-----TTTTTC-CCCHHHHHHHHHHHHHTTC--------H
T ss_pred HHHHHHHHHhcCCHhhcCeeEECCC--ceEEecCCCChhH-----hcCCCC-cCcHHHHHHHHHHHHHcCC--------H
Confidence 9999999999999999999999964 4899999999999 999998 9999999999999999997 4
Q ss_pred HHHhHHHHHHHHHHhhCCCcCcccccCcchhhhhccccccCHHHHHHHHHHHh
Q 010485 432 LLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQFYYLFLLISKISINK 484 (509)
Q Consensus 432 ~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~~~~~~~~~T~ef~~~Ii~~~ 484 (509)
++|++|++||.++|+ +|.+|+||||.+.| .+.++|+||+|+|+++|
T Consensus 384 ~~A~~Ie~Av~~~l~-~g~~T~Dlg~~~~g------~~~~~T~e~~daV~~~l 429 (429)
T 2d4v_A 384 EAAQAIVAAMNATIA-AGEVTGDLAALRGD------VPALSTTEFTAALIRRF 429 (429)
T ss_dssp HHHHHHHHHHHHHHH-TTCEEHHHHTTCTT------CCEECHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHH-cCCccccccccCCC------CCCcCHHHHHHHHHhhC
Confidence 569999999999999 99999999875332 12369999999999875
No 19
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=100.00 E-value=2.2e-104 Score=820.71 Aligned_cols=340 Identities=16% Similarity=0.061 Sum_probs=301.4
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHhcC----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchh
Q 010485 86 NPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRM 161 (509)
Q Consensus 86 ~~I~vLpGDGIGpEI~~~~~~~l~~~----~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~~~ 161 (509)
++|++|||||||||||++++++|.+. +++|+|+++++|+++++++|+++|++|+++|+++|++||||++||.+..+
T Consensus 5 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~p~~~~~ 84 (363)
T 1cnz_A 5 YHIAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHPLPKATVEGCEQADAILFGSVGGPKWENL 84 (363)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGTTS
T ss_pred cEEEEeCCCCcCHHHHHHHHHHHHHHHHhcCCceEEEEEeCChHHHhhcCCcCcHHHHHHHHHCCEEEEccccCCccccC
Confidence 68999999999999999999888553 79999999999999999999999999999999999999999999976544
Q ss_pred hhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCC--CC-------CCCCEEEEecccCccccccceeecCCCceee
Q 010485 162 KEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV--PG-------WKKPICIGRHAFGDQYRATDTVIKGPGKLKM 232 (509)
Q Consensus 162 ~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~--~~-------~~~DivIvREnTeG~Y~g~e~~~~~~g~~e~ 232 (509)
++ ++ ..++|+|++|||+||||+|+||+ +.+|++. ++ .+.|||||||||||+|+|.++... .+
T Consensus 85 ~~-~~-~~e~~~~l~LR~~ldlyanvRP~--~~~pgl~~~splk~~~~~~~vDivivREnteg~Y~g~~~~~~-~~---- 155 (363)
T 1cnz_A 85 PP-ES-QPERGALLPLRKHFKLFSNLRPA--KLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGRE-GS---- 155 (363)
T ss_dssp CG-GG-STTHHHHHHHHHHHTCCEEEEEE--ECCTTCGGGCSBCHHHHHHCCEEEEEEECSSGGGTCSSCEEE-CC----
T ss_pred Cc-cc-CcccchHHHHHHHcCCEEEEEEE--EecCCccCCCCCcccccCCCCCEEEEecccCCeecCCcCccc-cC----
Confidence 43 12 35678899999999999999998 4566653 12 247999999999999999864321 00
Q ss_pred eecCCCCCCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchhHHHHHHHHHHHhh
Q 010485 233 VFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERW 312 (509)
Q Consensus 233 ~~~~~~g~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY 312 (509)
++ . ..+.++++|||+++|||+|+||+||++|++|||+|||+|||| ++|+|+++|+||++ +|
T Consensus 156 -----~~-~-----------~~a~~~~~~T~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk-~~~lf~~~~~eva~-ey 216 (363)
T 1cnz_A 156 -----GQ-Y-----------EKAFDTEVYHRFEIERIARIAFESARKRRRKVTSIDKANVLQ-SSILWREIVNDVAK-TY 216 (363)
T ss_dssp -----GG-G-----------CEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHHT-TC
T ss_pred -----CC-C-----------ceEEEEEEEcHHHHHHHHHHHHHHHHhcCCeEEEEECCcccc-cchhHHHHHHHHHH-HC
Confidence 00 0 012377889999999999999999999988999999999999 99999999999986 89
Q ss_pred hhccCCCCeeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCC
Q 010485 313 RQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTR 391 (509)
Q Consensus 313 ~~~f~~PdI~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd 391 (509)
|+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ .+||||+||||||
T Consensus 217 ------pdI~~~~~~vD~~~m~lv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~-~a~fEpvHGSAPd 289 (363)
T 1cnz_A 217 ------PDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQG-FGLYEPAGGSAPD 289 (363)
T ss_dssp ------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTS-CEEEEESSCCCGG
T ss_pred ------CCceEeeeeHHHHHHHHhhCcccceEEEECCcchHHHHHHHHHhcCCCcccccceeCCCC-CeEEEcCCCChhh
Confidence 999999999999999999999999 99999999999999999999999999999999876 5899999999999
Q ss_pred cccccccCCCCCcChhHHHHHHHHHHHH-hhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCccc-ccCcchhhhhcccc
Q 010485 392 HFRLHQKGQETSTNSIASIFAWTRGLEH-RYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDA-LLSYSWLILLIDRQ 469 (509)
Q Consensus 392 ~~~~~IAGk~i~ANPiA~IlS~amML~h-lG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DL-gg~~~~~~~~~~~~ 469 (509)
|||||+ |||+|+|||++|||+| ||+ .++|++|++||.++|+ +|++|+|| ||. +
T Consensus 290 -----iAGk~i-ANP~A~IlS~ammL~~~lg~--------~~~A~~Ie~Av~~~l~-~g~~T~Dl~gG~----------~ 344 (363)
T 1cnz_A 290 -----IAGKNI-ANPIAQILSLALLLRYSLDA--------NDAATAIEQAINRALE-EGVRTGDLARGA----------A 344 (363)
T ss_dssp -----GTTTTC-SCCHHHHHHHHHHHHHHSSC--------HHHHHHHHHHHHHHHH-TTCCCGGGTTTT----------T
T ss_pred -----hcCCCc-cCcHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHh-cCCcCcccCCCC----------C
Confidence 999998 9999999999999999 996 4579999999999999 99999999 652 1
Q ss_pred ccCHHHHHHHHHHHhh
Q 010485 470 FYYLFLLISKISINKY 485 (509)
Q Consensus 470 ~~~T~ef~~~Ii~~~~ 485 (509)
.++|+||+|+|+++|.
T Consensus 345 ~~~T~e~~daV~~~l~ 360 (363)
T 1cnz_A 345 AVSTDEMGDIIARYVA 360 (363)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 2599999999999984
No 20
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}
Probab=100.00 E-value=6.8e-105 Score=835.67 Aligned_cols=360 Identities=19% Similarity=0.138 Sum_probs=307.2
Q ss_pred cceeccc--cEEEEcCCCcHHHHHHHHHHHHhcC----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCC
Q 010485 80 DRVKVQN--PIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCAT 153 (509)
Q Consensus 80 ~ki~~~~--~I~vLpGDGIGpEI~~~~~~~l~~~----~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~ 153 (509)
.|++||+ +|++|||||||||||++++++|.+. +++|+|+++++|+++++++|+++|++|+++|+++|++||||+
T Consensus 20 ~~~~vp~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~~k~~da~LkGav 99 (412)
T 2iv0_A 20 GKLIVPDNPIIPYFEGDGIGKDVVPAAIRVLDAAADKIGKEVVWFQVYAGEDAYKLYGNYLPDDTLNAIKEFRVALKGPL 99 (412)
T ss_dssp TEEECCSSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCSHHHHHHHSCSSCHHHHHHHHHHCEEEECCC
T ss_pred CeEeCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCc
Confidence 5788883 4999999999999999999888554 899999999999999999999999999999999999999999
Q ss_pred CCCCcchhhhhcccccCCCCchhHhhhcCceEEeecccc-CCCCCCCCCC-CCCEEEEecccCccccccceeecCCCcee
Q 010485 154 ITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILC-QNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLK 231 (509)
Q Consensus 154 ~tP~~~~~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~-k~lp~l~~~~-~~DivIvREnTeG~Y~g~e~~~~~~g~~e 231 (509)
+||.. ++|+|+|++|||+||||||+||+++ +++|++.+.+ +.|||||||||||+|+|.++....++..+
T Consensus 100 ~tP~~---------~~~~s~~l~LR~~Ldlyan~RPv~~~~g~~splk~~~~vDivIvREnTeg~Y~G~e~~~~~~~~~~ 170 (412)
T 2iv0_A 100 TTPVG---------GGYRSLNVTIRQVLDLYANVRPVYYLKGVPSPIKHPEKVNFVIFRENTEDVYAGIEWPRGSEEALK 170 (412)
T ss_dssp CCCSS---------SSSSHHHHHHHHHTTCCEEEEEEECCTTSCCSBSCGGGCEEEEEEECSSSGGGCCEECTTCHHHHH
T ss_pred cCCCC---------ccccChhHHHHHHcCCeEEEEEEEecCCCCCCCCCcCCCCEEEEecCCCCEeCCcccccCCccccc
Confidence 99953 4689999999999999999999963 4444332222 47999999999999999987532111111
Q ss_pred e-eecCCCCCCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCC-CCEEEEeCCccccccchhHHHHHHHHHH
Q 010485 232 M-VFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYE 309 (509)
Q Consensus 232 ~-~~~~~~g~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rk-k~Vt~v~KaNVlk~tdglf~~i~~eVa~ 309 (509)
+ .|.+.+ .. +++++..+..+++||++++|||+|+||+||++|+ ++||+|||+||||.|+|+|+++|+|||+
T Consensus 171 v~~~~~~~------~~-~~~~~~~a~~~~~~t~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~t~Glf~~~~~eva~ 243 (412)
T 2iv0_A 171 LIRFLKNE------FG-VTIREDSGIGIKPISEFATKRLVRMAIRYAIENNRKSVTLVHKGNIMKYTEGAFRDWGYEVAK 243 (412)
T ss_dssp HHHHHHHH------HC-CCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTCTTTHHHHHHHHHHHHH
T ss_pred hhhccccc------cc-ccCCCceEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECccchhhhhHHHHHHHHHHHH
Confidence 0 011100 00 1122223346778999999999999999999986 5799999999999999999999999997
Q ss_pred HhhhhccCCCC--------------------eeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccc
Q 010485 310 ERWRQKFEEHS--------------------IWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLM 368 (509)
Q Consensus 310 ~eY~~~f~~Pd--------------------I~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGla 368 (509)
++| |+ |+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+
T Consensus 244 ~ey------pd~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGla 317 (412)
T 2iv0_A 244 QEF------GEYCITEDELWDKYGGKQPEGKIVVKDRIADNMFQQILTRTDEYDVIALPNLNGDYLSDAAAALIGGLGIA 317 (412)
T ss_dssp HHS------TTTEECHHHHHHHHTTCCCTTCEEEEEEEGGGHHHHHHHSGGGCCEEEECHHHHHHHHHHHHHHTTCGGGC
T ss_pred HhC------CCccccccchhhhccccccCCeEEEEEEEHHHHHHHHhhCcccccEEEECCcchHHHHHHHHHhcCCcccc
Confidence 789 77 9999999999999999999999 99999999999999999999999999
Q ss_pred cccccCCCCCceeeecCCcccCCcccccccCCCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhC
Q 010485 369 TSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLS 448 (509)
Q Consensus 369 pSanig~d~~~a~FEp~HGSAPd~~~~~IAGk~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~ 448 (509)
||+|||++ .+||||+|||||| |||||+ |||+|+|||++|||+|||+ .++|++|++||.++|+ +
T Consensus 318 psanig~~--~a~fEp~HGSAPd-----iAGk~i-ANP~A~IlS~amML~~lg~--------~~~A~~Ie~Av~~~l~-~ 380 (412)
T 2iv0_A 318 PGSNIGDG--IGVFEPVHGSAPK-----YAGQNK-VNPTAEILTGALMFEYIGW--------KDASEMIKKAVEMTIS-S 380 (412)
T ss_dssp EEEEEETT--EEEEEESSCCCST-----TTTSSC-SCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHH-T
T ss_pred ceEEECCC--ceEEeCCCCChhh-----cCCCcc-cCcHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHHH-c
Confidence 99999954 5899999999999 999998 9999999999999999997 4569999999999999 9
Q ss_pred CCcCcccccCcchhhhhccccccCHHHHHHHHHHHhh
Q 010485 449 ISLLNDALLSYSWLILLIDRQFYYLFLLISKISINKY 485 (509)
Q Consensus 449 G~~T~DLgg~~~~~~~~~~~~~~~T~ef~~~Ii~~~~ 485 (509)
|++|+||++.. | ++.++|+||+|+|+++|.
T Consensus 381 g~~T~Dl~~~~-G------~~~~~T~e~~daV~~~l~ 410 (412)
T 2iv0_A 381 GIVTYDIHRHM-G------GTKVGTREFAEAVVENLQ 410 (412)
T ss_dssp TEECHHHHHHH-C------SEECCHHHHHHHHHHHHH
T ss_pred CCccccccccc-C------CCCcCHHHHHHHHHHHHh
Confidence 99999997321 1 112699999999999984
No 21
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A*
Probab=100.00 E-value=1.7e-104 Score=836.98 Aligned_cols=367 Identities=17% Similarity=0.107 Sum_probs=307.0
Q ss_pred ceecc--ccEEEEcCCCcHHHHHHHHHHHHhcC-------CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeec
Q 010485 81 RVKVQ--NPIVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKC 151 (509)
Q Consensus 81 ki~~~--~~I~vLpGDGIGpEI~~~~~~~l~~~-------~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg 151 (509)
+..|| .+|++|||||||||||++++++|.+. +++|+|+++++|++++++||+++|++|+++|+++|++|||
T Consensus 29 ~~~vp~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~~k~~da~LkG 108 (435)
T 1tyo_A 29 SLRVPDNPVVAFIRGDGVGPEVVESALKVVDAAVKKVYGGSRRIVWWELLAGHLAREKCGELLPKATLEGIRLARVALKG 108 (435)
T ss_dssp EEECCSSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCSHHHHHHHSSSSCHHHHHHHHHHSEEEEC
T ss_pred eecCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHhhcCCCcceEEEEEechHHHHHhhCCcCCHHHHHHHHhCCeEEEC
Confidence 45555 35999999999999999999887443 3899999999999999999999999999999999999999
Q ss_pred CCCCCCcchhhhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCCC-CCCCCEEEEecccCccccccceeecCCCce
Q 010485 152 ATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVP-GWKKPICIGRHAFGDQYRATDTVIKGPGKL 230 (509)
Q Consensus 152 ~~~tP~~~~~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~-~~~~DivIvREnTeG~Y~g~e~~~~~~g~~ 230 (509)
|++||.+ ++|+|+|++|||+||||||+||+++.++|++.+ .+++|||||||||||+|+|.++.. +.+..
T Consensus 109 av~tP~~---------~~~~s~~l~LRk~LdlyanlRPv~~~gv~splk~~~~vDivIvREnTeg~Y~G~e~~~-~~~~~ 178 (435)
T 1tyo_A 109 PLETPVG---------TGYRSLNVAIRQALDLYANIRPVRYYGQPAPHKYADRVDMVIFRENTEDVYAGIEWPH-DSPEA 178 (435)
T ss_dssp CCCCCTT---------SCTTHHHHHHHHHHTCCEEEEEEECCSCCCSBTTGGGCEEEEEEECSSSGGGCCEECT-TSHHH
T ss_pred CccCCCc---------ccccChhHHHHHHcCCEEEeEEEEecCCCCCCCCcCCCcEEEEecCCCCeeccccccc-CCccc
Confidence 9999953 568999999999999999999997434543322 246899999999999999998752 12110
Q ss_pred eeeecCCCCCCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhC-CCCEEEEeCCccccccchhHHHHHHHHHH
Q 010485 231 KMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYE 309 (509)
Q Consensus 231 e~~~~~~~g~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~r-kk~Vt~v~KaNVlk~tdglf~~i~~eVa~ 309 (509)
+.++... .... .+.+++..+.++++||++++|||+|+||+||++| +++||+|||+||||.|+|+|+++|+|||+
T Consensus 179 ~~v~~~~----~~~~-~~~~~~~~a~~~~~~T~~~~eRIar~AFe~A~~r~rkkVT~v~KaNVlk~tdGlf~~~~~eva~ 253 (435)
T 1tyo_A 179 ARIRRFL----AEEF-GISIREDAGIGVKPISRFATRRLMERALEWALRNGNTVVTIMHKGNIMKYTEGAFMRWAYEVAL 253 (435)
T ss_dssp HHHHHHH----HHHH-CCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEEECTTTSTTTHHHHHHHHHHHHH
T ss_pred cceeccc----hhhc-cccCCCCeEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhhHHHHHHHHHHHH
Confidence 0000000 0000 0011222344778999999999999999999998 57899999999999999999999999997
Q ss_pred Hhhhhc-c-------------CCCCeeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccC
Q 010485 310 ERWRQK-F-------------EEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLS 374 (509)
Q Consensus 310 ~eY~~~-f-------------~~PdI~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig 374 (509)
++|.++ | ++.+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||
T Consensus 254 ~eypd~~~~e~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGlapSanig 333 (435)
T 1tyo_A 254 EKFREHVVTEQEVQEKYGGVRPEGKILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAASALVGGIGMAAGMNMG 333 (435)
T ss_dssp HHSGGGEEEHHHHHHHSTTCCCTTCEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEEEEC
T ss_pred HhCCCcccccccccccccccccCCeEEEEeeeHHHHHHHHhhCCCCceEEEEcccchHHHHHHHHhhcCCcccCceeeEC
Confidence 789221 1 11129999999999999999999999 99999999999999999999999999999999
Q ss_pred CCCCceeeecCCcccCCcccccccCCCCCcChhHHHHHHHHHH-HHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCc
Q 010485 375 SDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGL-EHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLN 453 (509)
Q Consensus 375 ~d~~~a~FEp~HGSAPd~~~~~IAGk~i~ANPiA~IlS~amML-~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~ 453 (509)
+++ +||||+|||||| |||||+ |||+|+|||++||| +|||+ .++|++|++||.++|+ +|.+|+
T Consensus 334 ~~~--a~fEpvHGSAPd-----iAGk~i-ANP~A~IlS~amML~~hlg~--------~~~A~~Ie~Av~~~l~-~g~~T~ 396 (435)
T 1tyo_A 334 DGI--AVAEPVHGTAPK-----YAGKDL-INPSAEILSASLLIGEFMGW--------REVKSIVEYAIRKAVQ-SKKVTQ 396 (435)
T ss_dssp SSC--EEEEESSCCCGG-----GTTSSC-SCCHHHHHHHHHHHHTTSCC--------HHHHHHHHHHHHHHHH-TTCCBH
T ss_pred CCc--eeeecCCCChHH-----hcCCCC-cCcHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHH-cCCcCc
Confidence 764 899999999999 999998 99999999999999 99996 4569999999999999 999999
Q ss_pred ccccCcchhhhhccccccCHHHHHHHHHHHhh
Q 010485 454 DALLSYSWLILLIDRQFYYLFLLISKISINKY 485 (509)
Q Consensus 454 DLgg~~~~~~~~~~~~~~~T~ef~~~Ii~~~~ 485 (509)
||||.+.| .+.++|+||+|+|+++|.
T Consensus 397 Dlgg~~~g------~~~~~T~e~~daV~~~l~ 422 (435)
T 1tyo_A 397 DLARHMPG------VQPLRTSEYTETLIAYID 422 (435)
T ss_dssp HHHTTSTT------CCCBCHHHHHHHHHHHHH
T ss_pred cccccCCC------CCCcCHHHHHHHHHHHHh
Confidence 99885333 223799999999999994
No 22
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=100.00 E-value=6.7e-105 Score=821.44 Aligned_cols=327 Identities=19% Similarity=0.187 Sum_probs=299.9
Q ss_pred ccccEEEEcCCCcHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchhhh
Q 010485 84 VQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKE 163 (509)
Q Consensus 84 ~~~~I~vLpGDGIGpEI~~~~~~~l~~~~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~~~~e 163 (509)
..++|++||||||||||+++++++|.+.+++|+|+++++|+++ +++|+++|++++++|+++|++||||++||.+
T Consensus 20 ~~~~I~vipGDGIGpEv~~~~~~Vl~a~~~~i~~~~~~~G~~~-~~~g~~lp~~tl~~~~~~da~l~Gav~~P~~----- 93 (354)
T 3blx_B 20 GKYTVSFIEGDGIGPEISKSVKKIFSAANVPIEWESCDVSPIF-VNGLTTIPDPAVQSITKNLVALKGPLATPIG----- 93 (354)
T ss_dssp SCEECBCCCCSTTHHHHHHHHHHHHHTTTCSEECCCCCCCCEE-ETTEEECCHHHHHHHHHHSEEEECCCCCC-------
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEEechhh-hhhCCCCCHHHHHHHHHCCEEEECCccCCCC-----
Confidence 3468999999999999999999999888999999999999999 9999999999999999999999999999964
Q ss_pred hcccccCCCCchhHhhhcCceEEeeccccCCCCCCCCCC-CCCEEEEecccCccccccceeecCCCceeeeecCCCCCCc
Q 010485 164 FGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGP 242 (509)
Q Consensus 164 ~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~~-~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~g~~~ 242 (509)
.+|+|+|++|||+||||+|+||+ +.+|++.+++ +.|||||||||||+|+|.++... ++
T Consensus 94 ----~~~~s~~l~lR~~ldlyan~RP~--~~~pg~~s~~~~vD~vivREnteg~Y~g~e~~~~-~~-------------- 152 (354)
T 3blx_B 94 ----KGHRSLNLTLRKTFGLFANVRPA--KSIEGFKTTYENVDLVLIRENTEGEYSGIEHIVC-PG-------------- 152 (354)
T ss_dssp ------CCCHHHHHHHHHTEEEEEEEE--ECCTTCCCSSCSCEEEEEEECSSEEEEEEEEECS-TT--------------
T ss_pred ----ccccCchHHHHHHcCCEEEEEEe--cccCCCCCCCCCccEEEEecCcCCcccCCccccc-CC--------------
Confidence 35789999999999999999998 5778776655 47999999999999999876531 11
Q ss_pred eeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhC-CCCEEEEeCCccccccchhHHHHHHHHHHHhhhhccCCCCe
Q 010485 243 VELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSI 321 (509)
Q Consensus 243 ~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~r-kk~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~~PdI 321 (509)
.+.++++|||+++|||+|+||+||++| ++|||+|||+||||.+||+|+++|+||++ +| |+|
T Consensus 153 -----------~a~~~~~~T~~~~eRiar~AFe~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva~-ey------pdI 214 (354)
T 3blx_B 153 -----------VVQSIKLITRDASERVIRYAFEYARAIGRPRVIVVHKSTIQRLADGLFVNVAKELSK-EY------PDL 214 (354)
T ss_dssp -----------EEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEESCTTTCHHHHHHHHHHHHHGG-GC------TTS
T ss_pred -----------EEEEEEEEcHHHHHHHHHHHHHHHHhcCCCeEEEEECCcchHhHHHHHHHHHHHHHH-HC------CCc
Confidence 122677899999999999999999999 57899999999999999999999999987 89 999
Q ss_pred eEeeehHHHHHHHHhhCCCcc---EEEeCCcchhhHhhHhhhh-cCCcccccccccCCCCCceeeecCCcccCCcccccc
Q 010485 322 WYEHRLIDDMVAYAIKSEGGY---VWACKNYDGDVQSDLLAQG-FGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQ 397 (509)
Q Consensus 322 ~~e~~lVDa~amqlVk~P~~F---VIVt~NLfGDILSDlaA~l-~GsLGlapSanig~d~~~a~FEp~HGSAPd~~~~~I 397 (509)
+++|+|||+||||||++|++| ||||+|||||||||++|++ +|||||+||+|||+++ +||||+|||||| |
T Consensus 215 ~~~~~~vD~~~m~lv~~P~~FD~~Vivt~NlfGDIlSD~aa~l~~GslGl~pSanig~~~--a~fEp~HGSAPd-----i 287 (354)
T 3blx_B 215 TLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDLNSGLSAGSLGLTPSANIGHKI--SIFEAVHGSAPD-----I 287 (354)
T ss_dssp EEEEEEHHHHHHHHHHCGGGGTTEEEEECHHHHHHHHHHHHHHHTSSGGGCEEEEEESSC--EEEEECSCCCGG-----G
T ss_pred eEEEEEHHHHHHHHhhChhhCCceEEEecCcccchhHHHHHhhccCCccccceeEECCCc--eEEecCCCChhh-----h
Confidence 999999999999999999999 9999999999999999999 9999999999999875 899999999999 9
Q ss_pred cCCCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCC--CcCcccccCcchhhhhccccccCHHH
Q 010485 398 KGQETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSI--SLLNDALLSYSWLILLIDRQFYYLFL 475 (509)
Q Consensus 398 AGk~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G--~~T~DLgg~~~~~~~~~~~~~~~T~e 475 (509)
||||+ |||+|+|||++|||+|||+ .++|++||+||.++|+ +| ++|+||||+ ++|+|
T Consensus 288 AGk~i-ANP~A~IlS~ammL~~lg~--------~~~A~~Ie~Av~~~l~-~g~~~~T~DlgG~------------~~T~e 345 (354)
T 3blx_B 288 AGQDK-ANPTALLLSSVMMLNHMGL--------TNHADQIQNAVLSTIA-SGPENRTGDLAGT------------ATTSS 345 (354)
T ss_dssp TTTTC-CCTHHHHHHHHHHHHHHTC--------HHHHHHHHHTHHHHHT-SSTTSSCGGGTCC------------CCHHH
T ss_pred cCCCc-cCcHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHH-cCCCccCCCcCCC------------CCHHH
Confidence 99998 9999999999999999996 4579999999999999 89 899999887 59999
Q ss_pred HHHHHHHHh
Q 010485 476 LISKISINK 484 (509)
Q Consensus 476 f~~~Ii~~~ 484 (509)
|+|+|+++|
T Consensus 346 ~~dav~~~l 354 (354)
T 3blx_B 346 FTEAVIKRL 354 (354)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhhC
Confidence 999999875
No 23
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=100.00 E-value=1.3e-104 Score=818.11 Aligned_cols=330 Identities=15% Similarity=0.111 Sum_probs=299.2
Q ss_pred ceeccccEEEEcCCCcHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcch
Q 010485 81 RVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (509)
Q Consensus 81 ki~~~~~I~vLpGDGIGpEI~~~~~~~l~~~~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~~ 160 (509)
|....++|++||||||||||+++++++|.+.+++|+|+++++|+ ++|+++|++++++|+++|++||||++||..
T Consensus 13 ~~~~~~~I~vipGDGIGpEv~~~~~~Vl~a~~~~i~~~~~~~G~----~~g~~lp~~tl~~~~~~da~l~Gav~~P~~-- 86 (349)
T 3blx_A 13 KYGGRFTVTLIPGDGVGKEITDSVRTIFEAENIPIDWETINIKQ----TDHKEGVYEAVESLKRNKIGLKGLWHTPAD-- 86 (349)
T ss_dssp CCCCCEEEEEEEESHHHHHHHHHHHHHHHHTTCSEEEEECCCSS----TTCHHHHHHHHHHHHHHSEEEEEECCSHHH--
T ss_pred ccCCceEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEecCc----ccCCcCcHHHHHHHHHCCEEEECCccCCCC--
Confidence 44445789999999999999999999998889999999999998 799999999999999999999999999942
Q ss_pred hhhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCCCCC-CCCEEEEecccCccccccceeecCCCceeeeecCCCC
Q 010485 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (509)
Q Consensus 161 ~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~~-~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~g 239 (509)
..+|+|+|++|||+||||+|+||+ +.+|++.+.+ +.|||||||||||+|+|.++.. .+|+
T Consensus 87 ------~~~~~s~~l~lR~~ldlyan~RP~--~~~pg~~~~~~~vD~vivREnteg~Y~g~e~~~-~~gv---------- 147 (349)
T 3blx_A 87 ------QTGHGSLNVALRKQLDIYANVALF--KSLKGVKTRIPDIDLIVIRENTEGEFSGLEHES-VPGV---------- 147 (349)
T ss_dssp ------HHTCHHHHHHHHHTSCEEEEEEEE--ECCTTCCCSSCSCEEEEEEECSSGGGGCEEEEC-STTE----------
T ss_pred ------CCCccCchHHHHHHcCCEEEEEEE--eccCCCCCCCCCcCEEEEecCCCCcEeCCceec-cCCe----------
Confidence 135789999999999999999998 5778876665 4799999999999999987653 1111
Q ss_pred CCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhC-CCCEEEEeCCccccccchhHHHHHHHHHHHhhhhccCC
Q 010485 240 TGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEE 318 (509)
Q Consensus 240 ~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~r-kk~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~~ 318 (509)
+.++++|||+++|||+|+||+||++| ++|||+|||+||||.+||+|+++|+||++++|
T Consensus 148 ---------------a~~~~~~T~~~~eRiar~AF~~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva~~ey------ 206 (349)
T 3blx_A 148 ---------------VESLKVMTRPKTERIARFAFDFAKKYNRKSVTAVHKANIMKLGDGLFRNIITEIGQKEY------ 206 (349)
T ss_dssp ---------------EEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTSTTHHHHHHHHHHHHHHHHC------
T ss_pred ---------------EEEEEEeCHHHHHHHHHHHHHHHHhcCCCcEEEEeCCccchhhHHHHHHHHHHHHHhhC------
Confidence 12567899999999999999999999 57899999999999999999999999994599
Q ss_pred CCeeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCC-cccCCccccc
Q 010485 319 HSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAH-GTVTRHFRLH 396 (509)
Q Consensus 319 PdI~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~H-GSAPd~~~~~ 396 (509)
|+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ +||||+| |||||
T Consensus 207 p~i~~~~~~vD~~~~qlv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~--a~fEpvH~GSAPd----- 279 (349)
T 3blx_A 207 PDIDVSSIIVDNASMQAVAKPHQFDVLVTPSMYGTILGNIGAALIGGPGLVAGANFGRDY--AVFEPGSRHVGLD----- 279 (349)
T ss_dssp TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEEESSC--EEECCTTTTSCC------
T ss_pred CCeeEEEeeHHHHHHHHhhCcccccEEEECCcchHHHHHHHHhhcCCcccceEEEECCCc--eeEcCCCCCchhh-----
Confidence 999999999999999999999999 99999999999999999999999999999999875 8999999 99999
Q ss_pred ccCCCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCC-CcCcccccCcchhhhhccccccCHHH
Q 010485 397 QKGQETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSI-SLLNDALLSYSWLILLIDRQFYYLFL 475 (509)
Q Consensus 397 IAGk~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G-~~T~DLgg~~~~~~~~~~~~~~~T~e 475 (509)
|||||+ |||+|+|||++|||+|||+. ++|++||+||.++|+ +| ++|+||||+ ++|+|
T Consensus 280 iAGk~i-ANP~A~IlS~ammL~~lg~~--------~~A~~Ie~Av~~~l~-~G~~~T~Dlgg~------------~~T~e 337 (349)
T 3blx_A 280 IKGQNV-ANPTAMILSSTLMLNHLGLN--------EYATRISKAVHETIA-EGKHTTRDIGGS------------SSTTD 337 (349)
T ss_dssp -CCTTC-SCCHHHHHHHHHHHHHHTCC--------HHHHHHHHHHHHHHH-SSSSCBGGGTCC------------BCHHH
T ss_pred hcCCCC-CCcHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHHHHH-cCCccCCCcCCC------------CCHHH
Confidence 999998 99999999999999999963 469999999999999 99 799999987 59999
Q ss_pred HHHHHHHHhh
Q 010485 476 LISKISINKY 485 (509)
Q Consensus 476 f~~~Ii~~~~ 485 (509)
|+|+|+++|.
T Consensus 338 ~~daI~~~l~ 347 (349)
T 3blx_A 338 FTNEIINKLS 347 (349)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999999984
No 24
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=100.00 E-value=7.9e-104 Score=838.17 Aligned_cols=338 Identities=19% Similarity=0.171 Sum_probs=309.0
Q ss_pred ccceecc----ccEEEEcCCCcHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcC-CCCcHHHHHHHHhcCeeeecCC
Q 010485 79 IDRVKVQ----NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATD-DKVTVESAEATLKYNVAIKCAT 153 (509)
Q Consensus 79 ~~ki~~~----~~I~vLpGDGIGpEI~~~~~~~l~~~~~~i~~~~~~~G~~~~~~tG-~~lp~etleaik~~da~lkg~~ 153 (509)
.+||.|. ++|++||||||||||++++++++.+.+++|+|+++++|+++++++| +++|++++++|+++|++||||+
T Consensus 9 ~~~i~~~~~g~~~IavipGDGIGpEV~~~a~~VL~a~~~~ie~~~~~~G~~~~~~~G~~~lp~etle~ik~~daiLkGav 88 (496)
T 2d1c_A 9 GKKMHVLEDGRKLITVIPGDGIGPECVEATLKVLEAAKAPLAYEVREAGASVFRRGIASGVPQETIESIRKTRVVLKGPL 88 (496)
T ss_dssp SCEEEECTTSCEEEEEECCSTTHHHHHHHHHHHHHHTTCCEEEEECCCSHHHHTTTCTTSCCHHHHHHHHHHCEEEECCC
T ss_pred CceeEeccCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEecCHHHHhccCCCcCcHHHHHHHHHCCEEEECCc
Confidence 5788887 7899999999999999999999988899999999999999999999 9999999999999999999999
Q ss_pred CCCCcchhhhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCCCCC---CCCEEEEecccCccccccceeecCCCce
Q 010485 154 ITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW---KKPICIGRHAFGDQYRATDTVIKGPGKL 230 (509)
Q Consensus 154 ~tP~~~~~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~~---~~DivIvREnTeG~Y~g~e~~~~~~g~~ 230 (509)
+||.+ ++|+|+|++||++||||||+||+ +.+|++.+++ +.||+||||||||+|+|.++... +++
T Consensus 89 gtP~~---------~~~~s~~l~LRk~LdLyaNlRP~--k~~pgl~splk~~~vD~vIVREnTEG~Y~G~e~~~~-~~v- 155 (496)
T 2d1c_A 89 ETPVG---------YGEKSANVTLRKLFETYANVRPV--REFPNVPTPYAGRGIDLVVVRENVEDLYAGIEHMQT-PSV- 155 (496)
T ss_dssp CCCSS---------SSSCCHHHHHHHHTTCCEEEEEE--ECBTTBCCTTTTSCCEEEEEEECSSBGGGCCEEEEE-TTE-
T ss_pred cCCCc---------ccccChHHHHHHHhCCEEEEEEE--eecCCCCccccCCCccEEEEeeCcCceEeceeEecC-CCe-
Confidence 99963 46899999999999999999997 5667665443 57999999999999999876531 111
Q ss_pred eeeecCCCCCCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhC-CCCEEEEeCCccccccchhHHHHHHHHHH
Q 010485 231 KMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYE 309 (509)
Q Consensus 231 e~~~~~~~g~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~r-kk~Vt~v~KaNVlk~tdglf~~i~~eVa~ 309 (509)
+...++|||+++|||+|+||+||++| ++|||+|||+||||.|||+|+++|+||++
T Consensus 156 ------------------------a~~~~v~Tr~~ieRIar~AFe~A~~r~rkkVT~V~KaNVlk~sdGlfr~v~~eVa~ 211 (496)
T 2d1c_A 156 ------------------------AQTLKLISWKGSEKIVRFAFELARAEGRKKVHCATKSNIMKLAEGTLKRAFEQVAQ 211 (496)
T ss_dssp ------------------------EEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTCTTHHHHHHHHHHHHHT
T ss_pred ------------------------EEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCCchhhHHHHHHHHHHHHHH
Confidence 12556789999999999999999999 57899999999999999999999999977
Q ss_pred HhhhhccCCCCeeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcc
Q 010485 310 ERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGT 388 (509)
Q Consensus 310 ~eY~~~f~~PdI~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGS 388 (509)
+| |+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ +||||+|||
T Consensus 212 -eY------PdI~~e~~~VD~~amqLV~~P~~FDVIVt~NLfGDILSDlaA~l~GslGlapSanig~~~--a~FEpvHGS 282 (496)
T 2d1c_A 212 -EY------PDIEAVHIIVDNAAHQLVKRPEQFEVIVTTNMNGDILSDLTSGLIGGLGFAPSANIGNEV--AIFEAVHGS 282 (496)
T ss_dssp -TC------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHTTTTCGGGCEEEEECSSC--EEEEESSCC
T ss_pred -HC------CCceEEEEeHHHHHHHHhhCcCcceEEEECCcchHHHHHHHHHhcCCcccCcEEEECCCC--ceeeCCCCc
Confidence 89 999999999999999999999999 99999999999999999999999999999999875 899999999
Q ss_pred cCCcccccccCCCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCC-CcCcccccCcchhhhhcc
Q 010485 389 VTRHFRLHQKGQETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSI-SLLNDALLSYSWLILLID 467 (509)
Q Consensus 389 APd~~~~~IAGk~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G-~~T~DLgg~~~~~~~~~~ 467 (509)
||| |||||+ |||+|+|||++|||+|||+ .++|++||+||.++|+ +| ++|+||||.
T Consensus 283 APD-----IAGk~i-ANP~A~IlSaamML~hlG~--------~~~A~~Ie~AV~~vl~-~G~~~T~DLgg~--------- 338 (496)
T 2d1c_A 283 APK-----YAGKNV-INPTAVLLSAVMMLRYLEE--------FATADLIENALLYTLE-EGRVLTGDVVGY--------- 338 (496)
T ss_dssp CTT-----TTTSSC-CCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHH-HTSSCBHHHHCT---------
T ss_pred hhh-----hcCCCc-cCcHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHH-cCCeeccccCCC---------
Confidence 999 999998 9999999999999999996 4569999999999999 88 899999883
Q ss_pred ccccCHHHHHHHHHHHhhh
Q 010485 468 RQFYYLFLLISKISINKYL 486 (509)
Q Consensus 468 ~~~~~T~ef~~~Ii~~~~~ 486 (509)
.+.++|+||+|+|+++|..
T Consensus 339 ~~~~sT~e~~daV~~~L~~ 357 (496)
T 2d1c_A 339 DRGAKTTEYTEAIIQNLGK 357 (496)
T ss_dssp TTCBCHHHHHHHHHHTTTC
T ss_pred CCCcCHHHHHHHHHHHHhh
Confidence 1126999999999999965
No 25
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=100.00 E-value=2.6e-104 Score=827.63 Aligned_cols=344 Identities=15% Similarity=0.098 Sum_probs=300.2
Q ss_pred eccccEEEEcCCCcHHHHHHHHHHHHhcC----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCc
Q 010485 83 KVQNPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDE 158 (509)
Q Consensus 83 ~~~~~I~vLpGDGIGpEI~~~~~~~l~~~----~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~ 158 (509)
+|.++|++|||||||||||++++++|.+. +++|+|+++++|+++++++|+++|++|+++|+++|++||||+++|.+
T Consensus 40 ~~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~~daiL~Gavg~P~~ 119 (405)
T 3r8w_A 40 KKRYTITLLPGDGIGPEVVSIAKNVLQQAGSLEGVEFNFREMPIGGAALDLVGVPLPEETISAAKESDAVLLGAIGGYKW 119 (405)
T ss_dssp -CEEEEEEEEESTTHHHHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHSSSSCHHHHHHHHHSSEEEEEECCCGGG
T ss_pred CCCeEEEEECCCcccHHHHHHHHHHHHHHHHhcCCceEEEEEEcCHHHHHhhCCcCCHHHHHHHHHCCEEEEccccCCCc
Confidence 46689999999999999999999887442 79999999999999999999999999999999999999999999976
Q ss_pred chhhhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCC--CC------CCCCEEEEecccCccccccceeecCCCce
Q 010485 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV--PG------WKKPICIGRHAFGDQYRATDTVIKGPGKL 230 (509)
Q Consensus 159 ~~~~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~--~~------~~~DivIvREnTeG~Y~g~e~~~~~~g~~ 230 (509)
..+++. ..+.++|++|||+||||+|+||+ +.+|++. ++ .++|||||||||||+|+|.++.....+
T Consensus 120 ~~~~~~---~~p~~~ll~LRk~ldLyaNlRP~--k~~~gl~~~splk~~~~~~vD~vIvREnTeG~Y~G~e~~~~~~~-- 192 (405)
T 3r8w_A 120 DNNEKH---LRPEKGLLQIRAALKVFANLRPA--TVLPQLVDASTLKREVAEGVDLMVVRELTGGIYFGEPRGIKTNE-- 192 (405)
T ss_dssp TTSCGG---GSHHHHHHHHHHHHTCCEEEEEE--ECCGGGGGGSSBCHHHHTTCEEEEEEECSCSTTTCSSCEEEECS--
T ss_pred cCCccc---cCcccchHHHHHHhCCeEEEEEe--eccCCccccCccccccCCCceEEEEeeCCCCeecCCccccccCC--
Confidence 433321 11234589999999999999998 4556542 11 367999999999999999886532110
Q ss_pred eeeecCCCCCCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchhHHHHHHHHHHH
Q 010485 231 KMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEE 310 (509)
Q Consensus 231 e~~~~~~~g~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNVlk~tdglf~~i~~eVa~~ 310 (509)
.| . .-+.++++|||+++|||+|+||+||++|++|||+|||+|||| ++|+|+++|+||++
T Consensus 193 -------~~-~-----------~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNVlk-~sglf~~~~~eva~- 251 (405)
T 3r8w_A 193 -------NG-E-----------EVGFNTEVYAAHEIDRIARVAFETARKRRGKLCSVDKANVLE-ASILWRKRVTALAS- 251 (405)
T ss_dssp -------SS-C-----------EEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHGG-
T ss_pred -------CC-c-----------eEEEEEEEecHHHHHHHHHHHHHHHHHcCCeEEEEECchhhc-cccHHHHHHHHHHh-
Confidence 01 0 012367889999999999999999999999999999999998 55999999999976
Q ss_pred hhhhccCCCCeeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCccc
Q 010485 311 RWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTV 389 (509)
Q Consensus 311 eY~~~f~~PdI~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSA 389 (509)
+| |||+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ .+||||+||||
T Consensus 252 eY------PdV~~~~~~VD~~amqLV~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~pSanig~~~-~a~fEpvHGSA 324 (405)
T 3r8w_A 252 EY------PDVELSHMYVDNAAMQLVRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLSDSG-PGLFEPIHGSA 324 (405)
T ss_dssp GS------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHSCGGGCEEEEECSSS-CCEEEESSCCC
T ss_pred HC------CCCeEEeeeHHHHHHHHHhChhhCcEEeecchhhHHHHHHHHHhcCcccccceeeecCCC-CeEEecCCCCh
Confidence 89 999999999999999999999999 99999999999999999999999999999999876 69999999999
Q ss_pred CCcccccccCCCCCcChhHHHHHHHHHHHH-hhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCccc--ccCcchhhhhc
Q 010485 390 TRHFRLHQKGQETSTNSIASIFAWTRGLEH-RYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDA--LLSYSWLILLI 466 (509)
Q Consensus 390 Pd~~~~~IAGk~i~ANPiA~IlS~amML~h-lG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DL--gg~~~~~~~~~ 466 (509)
|| |||||+ |||+|+|||++|||+| ||+. ++|++||+||.++|+ +|++|+|| ||.
T Consensus 325 PD-----IAGk~i-ANP~A~IlS~amML~~slg~~--------~~A~~Ie~AV~~~l~-~G~~T~Dl~~gG~-------- 381 (405)
T 3r8w_A 325 PD-----IAGQDK-ANPLATILSAAMLLKYGLGEE--------KAAKRIEDAVLVALN-NGFRTGDIYSAGT-------- 381 (405)
T ss_dssp GG-----GTTTTC-CCCHHHHHHHHHHHHHTTCCT--------THHHHHHHHHHHHHH-TTEECGGGCCTTS--------
T ss_pred hh-----hCCCCC-CCcHHHHHHHHHHHHhhCccH--------HHHHHHHHHHHHHHH-cCCcCccccCCCC--------
Confidence 99 999998 9999999999999999 9964 469999999999999 99999999 664
Q ss_pred cccccCHHHHHHHHHHHhhh
Q 010485 467 DRQFYYLFLLISKISINKYL 486 (509)
Q Consensus 467 ~~~~~~T~ef~~~Ii~~~~~ 486 (509)
+.++|+||+++|+++|..
T Consensus 382 --~~~~T~e~~~aV~~~l~~ 399 (405)
T 3r8w_A 382 --KLVGCKEMGEEVLKSVDS 399 (405)
T ss_dssp --EECCHHHHHHHHHHHHC-
T ss_pred --cccCHHHHHHHHHHHHHH
Confidence 136999999999999964
No 26
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=100.00 E-value=7.5e-104 Score=816.21 Aligned_cols=336 Identities=17% Similarity=0.081 Sum_probs=297.5
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHhcC----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchh
Q 010485 86 NPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRM 161 (509)
Q Consensus 86 ~~I~vLpGDGIGpEI~~~~~~~l~~~----~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~~~ 161 (509)
.+|++|||||||||||++++++|.+. +++|+|+++++|+++++++|+++|++|+++|+++|++||||++||.+.++
T Consensus 13 ~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~P~~~~~ 92 (366)
T 1vlc_A 13 MKIAVLPGDGIGPEVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEPLPEETKKICLEADAIFLGSVGGPKWDDL 92 (366)
T ss_dssp EEEEEEEESTHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEEEECCCGGGTTS
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCccccC
Confidence 47999999999999999999888654 89999999999999999999999999999999999999999999975433
Q ss_pred hhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCC--CCC-------CCCEEEEecccCccccccceeecCCCceee
Q 010485 162 KEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV--PGW-------KKPICIGRHAFGDQYRATDTVIKGPGKLKM 232 (509)
Q Consensus 162 ~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~--~~~-------~~DivIvREnTeG~Y~g~e~~~~~~g~~e~ 232 (509)
| .++. ...++|++|||+||||||+||++ .+|++. +++ +.|||||||||||+|+|.++... ++
T Consensus 93 ~-~~~r-~~~~~~l~LRk~ldlyaN~RP~~--~~pgl~~~splk~~~~~~~vDivIvREnteG~Y~g~~~~~~-~~---- 163 (366)
T 1vlc_A 93 P-PEKR-PEIGGLLALRKMLNLYANIRPIK--VYRSLVHVSPLKEKVIGSGVDLVTVRELSYGVYYGQPRGLD-EE---- 163 (366)
T ss_dssp C-STTS-HHHHTHHHHHHHTTCCEEEEEEE--CCGGGGGGSSSCHHHHTTCCEEEEEEECSSGGGTEEEEEEC-SS----
T ss_pred C-cccC-cccchhHHHHHHhCCEEEEEEcc--ccCCCCCcCCCcccccCCCceEEEEEeCCCCeecCCccccC-CC----
Confidence 2 1111 11235999999999999999984 566654 122 47999999999999999886531 11
Q ss_pred eecCCCCCCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchhHHHHHHHHHHHhh
Q 010485 233 VFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERW 312 (509)
Q Consensus 233 ~~~~~~g~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY 312 (509)
.+.++++|||+++|||+|+||+||++|++|||+|||+|||| +||+|+++|+|||+ +|
T Consensus 164 ---------------------~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVt~v~KaNvlk-t~glf~~~~~eva~-ey 220 (366)
T 1vlc_A 164 ---------------------KGFDTMIYDRKTVERIARTAFEIAKNRRKKVTSVDKANVLY-SSMLWRKVVNEVAR-EY 220 (366)
T ss_dssp ---------------------CEEEECCCCHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHHT-TC
T ss_pred ---------------------eEEEEEEEcHHHHHHHHHHHHHHHHHcCCeEEEEECCcccc-cchHHHHHHHHHHH-HC
Confidence 12367789999999999999999999988999999999999 99999999999997 89
Q ss_pred hhccCCCCeeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCC
Q 010485 313 RQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTR 391 (509)
Q Consensus 313 ~~~f~~PdI~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd 391 (509)
|+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+||| + .+||||+||||||
T Consensus 221 ------pdV~~~~~~VD~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSanig-~--~alfEpvHGSAPd 291 (366)
T 1vlc_A 221 ------PDVELTHIYVDNAAMQLILKPSQFDVILTTNMFGDILSDESAALPGSLGLLPSASFG-D--KNLYEPAGGSAPD 291 (366)
T ss_dssp ------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHTTSSSCGGGCEEEEES-S--SEEEEESSCCCTT
T ss_pred ------CCceEEeeeHHHHHHHHhhCcccceEEEEcchhHHHHHHHHHHhcCccccccEeeeC-C--ceeeecCCCchhh
Confidence 999999999999999999999999 99999999999999999999999999999999 5 4999999999999
Q ss_pred cccccccCCCCCcChhHHHHHHHHHHHH-hhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhhhhccccc
Q 010485 392 HFRLHQKGQETSTNSIASIFAWTRGLEH-RYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQF 470 (509)
Q Consensus 392 ~~~~~IAGk~i~ANPiA~IlS~amML~h-lG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~~~~~~~ 470 (509)
|||||+ |||+|+|||++|||+| ||+ .++|++|++||.++|+ +|++|+|||.. | ++.
T Consensus 292 -----IAGk~i-ANP~A~IlS~ammL~~slg~--------~~~A~~Ie~Av~~~l~-~g~~T~Dlg~~--g------g~~ 348 (366)
T 1vlc_A 292 -----IAGKNI-ANPIAQILSLAMMLEHSFGM--------VEEARKIERAVELVIE-EGYRTRDIAED--P------EKA 348 (366)
T ss_dssp -----TTTTTC-SCCHHHHHHHHHHHHHHHCC--------HHHHHHHHHHHHHHHH-TTCCCGGGCSS--G------GGC
T ss_pred -----cCCCCc-cCcHHHHHHHHHHHHHHcCC--------hhHHHHHHHHHHHHHH-cCCcccccccC--C------CCC
Confidence 999999 9999999999999999 996 4579999999999999 99999999832 1 112
Q ss_pred cCHHHHHHHHHHHhh
Q 010485 471 YYLFLLISKISINKY 485 (509)
Q Consensus 471 ~~T~ef~~~Ii~~~~ 485 (509)
++|+||+|+|+++|.
T Consensus 349 ~~T~e~~daV~~~l~ 363 (366)
T 1vlc_A 349 VSTSQMGDLICKKLE 363 (366)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 599999999999983
No 27
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=100.00 E-value=5.3e-104 Score=816.97 Aligned_cols=341 Identities=19% Similarity=0.148 Sum_probs=298.1
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHhcC----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchh
Q 010485 86 NPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRM 161 (509)
Q Consensus 86 ~~I~vLpGDGIGpEI~~~~~~~l~~~----~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~~~ 161 (509)
++|++|||||||||||++++++|.+. +++|+|+++++|++++++||+++|++|+++|+++|++||||+++|.+..+
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gavg~p~~~~~ 81 (358)
T 1a05_A 2 KKIAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQLAMAADAVILGAVGGPRWDAY 81 (358)
T ss_dssp CEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCHHHHHHHHSSSSCHHHHHHHHHCSEEEEEECCCGGGTTS
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCceEEEEEeCCcHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCcccC
Confidence 57999999999999999999888543 79999999999999999999999999999999999999999999975433
Q ss_pred hhhcccccCCCCchhHhhhcCceEEeeccccCCCCCCCC--C------CCCCEEEEecccCccccccceeecCCCceeee
Q 010485 162 KEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVP--G------WKKPICIGRHAFGDQYRATDTVIKGPGKLKMV 233 (509)
Q Consensus 162 ~e~~L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~--~------~~~DivIvREnTeG~Y~g~e~~~~~~g~~e~~ 233 (509)
+. ++ ..+++ |++|||+||||+|+||++ .+|++.. . .+.|||||||||||+|+|.++....
T Consensus 82 ~~-~~-~~e~~-ll~lRk~ldlyanvRP~~--~~pgl~~~splk~~~~~~vDivIvREnteg~Y~g~~~~~~~------- 149 (358)
T 1a05_A 82 PP-AK-RPEQG-LLRLRKGLDLYANLRPAQ--IFPQLLDASPLRPELVRDVDILVVRELTGDIYFGQPRGLEV------- 149 (358)
T ss_dssp CG-GG-SHHHH-HHHHHHHHTCCEEEEEEE--CCTTSGGGCSBCHHHHTTCEEEEEEECSSSTTTCSSCEEEE-------
T ss_pred Cc-cc-cchhh-HHHHHHHcCCEEEEEEEE--ecCCccCCCCCccccCCCceEEEEEecCCCcccCCcCcccc-------
Confidence 31 11 12345 899999999999999984 5666531 1 2479999999999999998542200
Q ss_pred ecCCCCCCceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchhHHHHHHHHHHHhhh
Q 010485 234 FDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWR 313 (509)
Q Consensus 234 ~~~~~g~~~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~ 313 (509)
.++ . ..+.++++|||+++|||+|+||+||++|++|||+|||+|||| ++|+|+++|+|||+ +|
T Consensus 150 ---~~~-~-----------~~a~~~~~~T~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk-~~~lf~~~~~eva~-ey- 211 (358)
T 1a05_A 150 ---IDG-K-----------RRGFNTMVYDEDEIRRIAHVAFRAAQGRRKQLCSVDKANVLE-TTRLWREVVTEVAR-DY- 211 (358)
T ss_dssp ---ETT-E-----------EEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHGG-GC-
T ss_pred ---CCC-C-----------ceEEEEEEEcHHHHHHHHHHHHHHHHhcCCeEEEEECCcccc-cchhHHHHHHHHHH-HC-
Confidence 000 0 012267889999999999999999999988999999999999 99999999999996 89
Q ss_pred hccCCCCeeEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCCceeeecCCcccCCc
Q 010485 314 QKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRH 392 (509)
Q Consensus 314 ~~f~~PdI~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~~a~FEp~HGSAPd~ 392 (509)
|+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+||| ++ .+||||+||||||
T Consensus 212 -----pdI~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig-~~-~~~fEpvHGSAPd- 283 (358)
T 1a05_A 212 -----PDVRLSHMYVDNAAMQLIRAPAQFDVLLTGNMFGDILSDEASQLTGSIGMLPSASLG-EG-RAMYEPIHGSAPD- 283 (358)
T ss_dssp -----TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGCEEEEEC-SS-CEEEEESSCCCGG-
T ss_pred -----CCceEEeeeHHHHHHHHHhCCCcccEEEecCcccHhHHHHHHhhcCCccccceeeeC-CC-ceeeecCCCChhH-
Confidence 999999999999999999999999 99999999999999999999999999999999 55 6999999999999
Q ss_pred ccccccCCCCCcChhHHHHHHHHHHHH-hhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCcccccCcchhhhhcccccc
Q 010485 393 FRLHQKGQETSTNSIASIFAWTRGLEH-RYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALLSYSWLILLIDRQFY 471 (509)
Q Consensus 393 ~~~~IAGk~i~ANPiA~IlS~amML~h-lG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg~~~~~~~~~~~~~~ 471 (509)
|||||+ |||+|+|||++|||+| ||+ .++|++||+||.++|+ +|++|+||+|. | ++.+
T Consensus 284 ----iAGk~i-ANP~A~IlS~ammL~~~lg~--------~~~A~~Ie~Av~~~l~-~g~~T~Dl~g~--g------~~~~ 341 (358)
T 1a05_A 284 ----IAGQDK-ANPLATILSVAMMLRHSLNA--------EPWAQRVEAAVQRVLD-QGLRTADIAAP--G------TPVI 341 (358)
T ss_dssp ----GTTTTC-SCCHHHHHHHHHHHHHTSSC--------HHHHHHHHHHHHHHHH-TTCCCGGGCCT--T------SCCC
T ss_pred ----hcCCCc-cCcHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHH-cCCcCcccccC--C------CCCc
Confidence 999998 9999999999999999 996 4579999999999999 99999999763 1 1226
Q ss_pred CHHHHHHHHHHHhhh
Q 010485 472 YLFLLISKISINKYL 486 (509)
Q Consensus 472 ~T~ef~~~Ii~~~~~ 486 (509)
+|+||+|+|+++|.+
T Consensus 342 ~T~e~~daV~~~l~~ 356 (358)
T 1a05_A 342 GTKAMGAAVVNALNL 356 (358)
T ss_dssp CHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999999864
No 28
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=100.00 E-value=1.3e-103 Score=808.00 Aligned_cols=329 Identities=17% Similarity=0.126 Sum_probs=294.0
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchhhhhc
Q 010485 86 NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (509)
Q Consensus 86 ~~I~vLpGDGIGpEI~~~~~~~l~~~~~~i~~~~~~~G~~~~~~tG~~lp~etleaik~~da~lkg~~~tP~~~~~~e~~ 165 (509)
++|++|||||||||||++++++|.+...+|+|+++++|+++++++|+++|++|+++|+++|++||||++||+.. + +
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~da~l~Gav~~P~~~---~-~ 77 (337)
T 1w0d_A 2 SKLAIIAGDGIGPEVTAEAVKVLDAVVPGVQKTSYDLGARRFHATGEVLPDSVVAELRNHDAILLGAIGDPSVP---S-G 77 (337)
T ss_dssp CEEEEEEESTTHHHHHHHHHHHHHHHSTTCEEEECCCSHHHHHHHSCSSCHHHHHHHTTSSEEEEEECCCTTSC---T-T
T ss_pred cEEEEeCCCCcCHHHHHHHHHHHHHhcCCcEEEEEecchHHHhhhCCcCCHHHHHHHHHCCEEEECCccCCCCC---C-c
Confidence 57999999999999999999888654446999999999999999999999999999999999999999999531 1 1
Q ss_pred ccccCCCCchhHhhhcCceEEeeccccCCCCCCCCCCC----CCEEEEecccCccccccceeecCCCceeeeecCCCCCC
Q 010485 166 LKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWK----KPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTG 241 (509)
Q Consensus 166 L~~~~~S~n~~LRk~LdLyanvRPi~~k~lp~l~~~~~----~DivIvREnTeG~Y~g~e~~~~~~g~~e~~~~~~~g~~ 241 (509)
.+|+|+|++|||+||||+|+||+ +.+|++.++++ .|||||||||||+|+|.++... +|. +
T Consensus 78 --~~~~s~~l~lR~~ldlyan~RP~--~~~pg~~s~l~~~~~~DivivREnteg~Y~g~e~~~~-~g~---------~-- 141 (337)
T 1w0d_A 78 --VLERGLLLRLRFELDHHINLRPA--RLYPGVASPLSGNPGIDFVVVREGTEGPYTGNGGAIR-VGT---------P-- 141 (337)
T ss_dssp --HHHHHTHHHHHHHTTCCEEEEEE--ECCTTCCCSBTTCCCCEEEEEEECSCSGGGCCEEEES-TTS---------T--
T ss_pred --ccccchHHHHHHHcCCEEEEEEe--ecCCCCCCcccCCCCCcEEEEecCCCCeecCCcceec-CCC---------C--
Confidence 14689999999999999999998 56676655543 7999999999999999987641 111 0
Q ss_pred ceeeeeeccCCCceeeeeccChHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchhHHHHHHHHHHHhhhhccCCCCe
Q 010485 242 PVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSI 321 (509)
Q Consensus 242 ~~~~~v~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~~PdI 321 (509)
+..+.++++|||+++|||+|+||+||++|++|||+|||+||||.|||+|+++|+|||+ +| |+|
T Consensus 142 ----------~~~a~~~~~~T~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk~s~glf~~~~~eva~-ey------p~i 204 (337)
T 1w0d_A 142 ----------NEVATEVSVNTAFGVRRVVADAFERARRRRKHLTLVHKTNVLTFAGGLWLRTVDEVGE-CY------PDV 204 (337)
T ss_dssp ----------TCEEEEEEEEEHHHHHHHHHHHHHHHHHTTSEEEEEECTTTSHHHHHHHHHHHHHHHT-TC------TTS
T ss_pred ----------CCeEEEEEEEcHHHHHHHHHHHHHHHHHcCCeEEEEECCccchhhhHHHHHHHHHHHH-HC------Cce
Confidence 0112377889999999999999999999988999999999999999999999999987 89 999
Q ss_pred eEeeehHHHHHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCC-ceeeecCCcccCCcccccccC
Q 010485 322 WYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAHGTVTRHFRLHQKG 399 (509)
Q Consensus 322 ~~e~~lVDa~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~-~a~FEp~HGSAPd~~~~~IAG 399 (509)
+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++. ++||||+|||||| |||
T Consensus 205 ~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~psanig~~~~~~a~fEp~HGSAPd-----iAG 279 (337)
T 1w0d_A 205 EVAYQHVDAATIHMITDPGRFDVIVTDNLFGDIITDLAAAVCGGIGLAASGNIDATRANPSMFEPVHGSAPD-----IAG 279 (337)
T ss_dssp EEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEEEECTTCSSCEEEEESSCCCGG-----GTT
T ss_pred EEEEEEHHHHHHHHhhCcccccEEEECcchhHHHHHHHhhhcCCcccCceeEeCCCCCCceEEecCCCChhh-----hCC
Confidence 999999999999999999999 999999999999999999999999999999998652 5899999999999 999
Q ss_pred CCCCcChhHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCccccc-CcchhhhhccccccCHHHHHH
Q 010485 400 QETSTNSIASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALL-SYSWLILLIDRQFYYLFLLIS 478 (509)
Q Consensus 400 k~i~ANPiA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg-~~~~~~~~~~~~~~~T~ef~~ 478 (509)
||+ |||+|+|||++|||+|||+ .++|++||+||.++|+ +| || + ++|+||+|
T Consensus 280 k~i-ANP~A~IlS~ammL~~lg~--------~~~A~~Ie~Av~~~l~-~g------gg~~------------~~T~e~~~ 331 (337)
T 1w0d_A 280 QGI-ADPTAAIMSVALLLSHLGE--------HDAAARVDRAVEAHLA-TR------GSER------------LATSDVGE 331 (337)
T ss_dssp SSC-SCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHH-HC------TTCC------------CCHHHHHH
T ss_pred CCC-cCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHH-cC------CCCC------------cCHHHHHH
Confidence 998 9999999999999999996 4569999999999999 77 55 3 59999999
Q ss_pred HHHHHh
Q 010485 479 KISINK 484 (509)
Q Consensus 479 ~Ii~~~ 484 (509)
+|+++|
T Consensus 332 av~~~l 337 (337)
T 1w0d_A 332 RIAAAL 337 (337)
T ss_dssp HHHHTC
T ss_pred HHHhhC
Confidence 999875
No 29
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A*
Probab=96.94 E-value=0.014 Score=63.25 Aligned_cols=193 Identities=16% Similarity=0.113 Sum_probs=132.3
Q ss_pred ceeeeeccChHHHHHHHHHHHHHHHhCCCC-EEEEeCCccccccchhHHHHHHHHHHHhhhhccCCCCeeEeee-hHHHH
Q 010485 254 GIALAMYNVDESIRAFAESSMSLAFSKKWP-LYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR-LIDDM 331 (509)
Q Consensus 254 ~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~-Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~~PdI~~e~~-lVDa~ 331 (509)
+++-.+-.-+.-|+..++.|.+.||..+.+ |.-.|+.-. -| .++...| + .|.......++.++-+ -+++|
T Consensus 454 DIwRmcq~KDapI~DWVkLAV~Rar~sg~pavFWLD~~Ra---HD---a~lI~kV-~-~yL~~hdt~GLdi~Im~p~~A~ 525 (741)
T 1itw_A 454 DIWRMCQAKDAPIQDWVKLAVNRARATNTPAVFWLDPARA---HD---AQVIAKV-E-RYLKDYDTSGLDIRILSPVEAT 525 (741)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHHHHHTCCEEEECCTTSH---HH---HHHHHHH-H-HHHTTSCCTTCCEEEECHHHHH
T ss_pred cchhhhhccCchHHHHHHHHHHHHHhcCCCeEEeeCCCCc---cH---HHHHHHH-H-HHHHhcCCCCCceEeeCHHHHH
Confidence 455444446778999999999999998877 444443321 22 3455566 3 5766666667777766 56776
Q ss_pred HHHHhh-CCCcc-EEEeCCcchhhHhhHhhhh--cCCcccccccccCCCCCceeeec-CCcccCCcccccccCCCCCcCh
Q 010485 332 VAYAIK-SEGGY-VWACKNYDGDVQSDLLAQG--FGSLGLMTSVLLSSDGKTLEAEA-AHGTVTRHFRLHQKGQETSTNS 406 (509)
Q Consensus 332 amqlVk-~P~~F-VIVt~NLfGDILSDlaA~l--~GsLGlapSanig~d~~~a~FEp-~HGSAPd~~~~~IAGk~i~ANP 406 (509)
-.-|=+ +-+.- +=||.|..=|+|+||.--| --|-=|+.=.=+=..| ++||. +.||||.|..+.+.-.-..=+.
T Consensus 526 ~~sleRir~G~dTISVTGNVLRDYLTDLFPIlELGTSAKMLSIVPLm~GG--GLfETGAGGSAPKHVqQ~~eEnhLRWDS 603 (741)
T 1itw_A 526 RFSLARIREGKDTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMSGG--GLFETGAGGSAPKHVQQFLEEGYLRWDS 603 (741)
T ss_dssp HHHHHHHHTTCCCEEEECHHHHHHHHHHHHHHHHSCSSSSEEEEEBTTSC--EEEESCSSCCCHHHHHHHHHHSCCCCCC
T ss_pred HHHHHHHHcCCCeEEeechhhhhhccccchhhhhccchhHhhhcccccCC--ccccCCCCcCchHHHHHHHHcCccchhh
Confidence 655543 33444 8899999999999998733 2222222111111123 79998 6789999998865544445789
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCccccc
Q 010485 407 IASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALL 457 (509)
Q Consensus 407 iA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg 457 (509)
++-+|+.+--|+|++...+ |..-.-.|+.|.+|+.+.|+++....+-.|.
T Consensus 604 LGEFlALa~Sle~l~~~~~-N~kA~vLa~tLD~At~~~L~n~KSPsRkvGe 653 (741)
T 1itw_A 604 LGEFLALAASLEHLGNAYK-NPKALVLASTLDQATGKILDNNKSPARKVGE 653 (741)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTCSCCSSSSS
T ss_pred HHHHHHHHHhHHHHHhhcC-ChHHHHHHHHHHHHHHHHHhCCCCCCcccCC
Confidence 9999999999999998776 7777788999999999999833333444443
No 30
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A*
Probab=96.94 E-value=0.015 Score=63.21 Aligned_cols=193 Identities=14% Similarity=0.097 Sum_probs=132.2
Q ss_pred ceeeeeccChHHHHHHHHHHHHHHHhCCCC-EEEEeCCccccccchhHHHHHHHHHHHhhhhccCCCCeeEeee-hHHHH
Q 010485 254 GIALAMYNVDESIRAFAESSMSLAFSKKWP-LYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR-LIDDM 331 (509)
Q Consensus 254 ~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~-Vt~v~KaNVlk~tdglf~~i~~eVa~~eY~~~f~~PdI~~e~~-lVDa~ 331 (509)
+++-.+-.-+.-|+..++.|.+.||..+.+ |.-.|+.-. -| .++...| + .|.......++.++-+ -+++|
T Consensus 450 DIwRmcq~KDapI~DWVkLAV~Rar~sg~pavFWLD~~Ra---HD---a~lI~kV-~-~yL~~hdt~GLdi~Im~p~~A~ 521 (738)
T 2b0t_A 450 DIWRACQVKDAPIQDWVKLAVTRSRLSGMPAVFWLDPERA---HD---RNLASLV-E-KYLADHDTEGLDIQILSPVEAT 521 (738)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEECCTTCH---HH---HHHHHHH-H-HHHTTSCCTTCCEEEECHHHHH
T ss_pred cchhhhhccCchHHHHHHHHHHHHHhcCCCeEEeeCCCCc---cH---HHHHHHH-H-HHHHhcCCCCCceEeeCHHHHH
Confidence 455444446778999999999999998877 444443321 22 3455566 3 5766666667777766 56776
Q ss_pred HHHHhh-CCCcc-EEEeCCcchhhHhhHhhhh--cCCcccccccccCCCCCceeeec-CCcccCCcccccccCCCCCcCh
Q 010485 332 VAYAIK-SEGGY-VWACKNYDGDVQSDLLAQG--FGSLGLMTSVLLSSDGKTLEAEA-AHGTVTRHFRLHQKGQETSTNS 406 (509)
Q Consensus 332 amqlVk-~P~~F-VIVt~NLfGDILSDlaA~l--~GsLGlapSanig~d~~~a~FEp-~HGSAPd~~~~~IAGk~i~ANP 406 (509)
-.-|=+ +-+.- +=||.|..=|+|+||.--| --|-=|+.=.=+=..| ++||. +.||||.|..+.+.-.-..=+.
T Consensus 522 ~~slerir~G~dTISVTGNVLRDYLTDLFPIlELGTSAKMLSIVPLm~GG--GLfETGAGGSAPKHVqQ~~eEnhLRWDS 599 (738)
T 2b0t_A 522 QLSIDRIRRGEDTISVTGNVLRDYNTDLFPILELGTSAKMLSVVPLMAGG--GLFETGAGGSAPKHVQQVQEENHLRWDS 599 (738)
T ss_dssp HHHHHHHHTTCCCEEEECHHHHHHHHHHHHHHHHSCSSSCEEEEEBTTSC--EEEECCSSCCCHHHHHHHHHHSCCCCCC
T ss_pred HHHHHHHHcCCCeEEeechhhhhhccccchhhhhccchhHhhhcccccCC--ccccCCCCcCchHHHHHHHHcCccchhh
Confidence 655543 33444 8899999999999998733 2222222111111123 79998 6789999998865544445789
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHHhhCCCcCccccc
Q 010485 407 IASIFAWTRGLEHRYMLVCAKLRLFLLLHSFPTISILNIYLSISLLNDALL 457 (509)
Q Consensus 407 iA~IlS~amML~hlG~~d~~~~~l~~~A~~Ie~AV~~vl~~~G~~T~DLgg 457 (509)
++-+|+.+--|+|++...+ |..-.-.|+.|.+|+.+.|+++....+-.|.
T Consensus 600 LGEFlALa~Sle~l~~~~~-N~kA~vLa~tLD~At~~~L~n~KSPsRkvGe 649 (738)
T 2b0t_A 600 LGEFLALAESFRHELNNNG-NTKAGVLADALDKATEKLLNEEKSPSRKVGE 649 (738)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHTTCSCCSSTTS
T ss_pred HHHHHHHHHhHHHHHhhcC-ChHHHHHHHHHHHHHHHHHhCCCCCCcccCC
Confidence 9999999999999998776 7777788999999999999833333444443
No 31
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=92.18 E-value=0.084 Score=54.12 Aligned_cols=140 Identities=13% Similarity=0.044 Sum_probs=85.4
Q ss_pred ccChHHHHHHHHHHHHHHHhCC--CCEEEEeCCccccccchhH-HHHHHHHHH--HhhhhccCCCCeeEe-eehHHHHHH
Q 010485 260 YNVDESIRAFAESSMSLAFSKK--WPLYLSTKNTILKKYDGRF-KDIFQQVYE--ERWRQKFEEHSIWYE-HRLIDDMVA 333 (509)
Q Consensus 260 ~~Tr~~ieRIar~AFe~A~~rk--k~Vt~v~KaNVlk~tdglf-~~i~~eVa~--~eY~~~f~~PdI~~e-~~lVDa~am 333 (509)
.+|.+.+.+.++...++-++-+ ++-..|-==|==.-..|+| +|--+.+.- ++.++ .+|.+. -.=-|.+-.
T Consensus 181 ~it~e~i~~~i~~~~~L~~~fgi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PAi~~~r~----~Gi~~~GP~paDT~F~ 256 (330)
T 2hi1_A 181 TLSTARVETVIGIADTFLKRVGYVKPRIAVAGVNPHAGENGLFGDEETRILTPAITDARA----KGMDVYGPCPPDTVFL 256 (330)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTTCSSCEEEEECSSGGGSSTTSCCHHHHHTHHHHHHHHHT----TTCEEEEEECHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCCCCCCCCHhHHHHHHHHHHHHHH----CCCceeCCCCchhhcc
Confidence 3799999999999988333234 4544554455444345776 332222211 12221 466664 344577665
Q ss_pred HHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCC-ceeeecCCcccCCcccccccCCCCCcChhHHHH
Q 010485 334 YAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAHGTVTRHFRLHQKGQETSTNSIASIF 411 (509)
Q Consensus 334 qlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~-~a~FEp~HGSAPd~~~~~IAGk~i~ANPiA~Il 411 (509)
+-.+ +.| ++|| ||= |.+---+=-+|+--+.|+.- |. ..---|-||||.| |||||+ |||.+++-
T Consensus 257 ~~~~--~~~D~vla--MYH----DQGlip~K~l~F~~gVNvTl-GLP~iRTSvDHGTAfD-----IAGkG~-A~~~Sl~~ 321 (330)
T 2hi1_A 257 QAYE--GQYDMVVA--MYH----DQGHIPLKLLGFYDGVNITA-GLPFIRTSADHGTAFD-----IAWTGK-AKSESMAV 321 (330)
T ss_dssp HHHT--TSCSEEEE--SSH----HHHHHHHHHCC-CCSEEEEE-TSSSEEEEESCCCCTT-----TTTTTC-CCCHHHHH
T ss_pred cccc--ccCCEEEE--ccc----ccccHhHhhcccCcceEEec-CCCEEEecCCCCcccc-----ccCCCC-CChHHHHH
Confidence 5543 577 6665 333 45544555566667788742 21 2455789999999 999998 99999988
Q ss_pred HHHHHHH
Q 010485 412 AWTRGLE 418 (509)
Q Consensus 412 S~amML~ 418 (509)
+.-+..+
T Consensus 322 Ai~~A~~ 328 (330)
T 2hi1_A 322 SIKLAMQ 328 (330)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8766543
No 32
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400}
Probab=92.17 E-value=0.081 Score=54.39 Aligned_cols=136 Identities=15% Similarity=0.021 Sum_probs=73.4
Q ss_pred ccChHHHHHHHHHHHHHHHhCC--CCEEEEeCCccccccchhH-HH---HHHHHHHHhhhhccCCCCeeEee-ehHHHHH
Q 010485 260 YNVDESIRAFAESSMSLAFSKK--WPLYLSTKNTILKKYDGRF-KD---IFQQVYEERWRQKFEEHSIWYEH-RLIDDMV 332 (509)
Q Consensus 260 ~~Tr~~ieRIar~AFe~A~~rk--k~Vt~v~KaNVlk~tdglf-~~---i~~eVa~~eY~~~f~~PdI~~e~-~lVDa~a 332 (509)
.+|.+.+.+.++...+.-++-+ ++=..|-==|==.-.+|+| +| +..=+-+ +.++ .++.+.- .=-|.+-
T Consensus 196 ~It~~~I~~~i~~~~~~l~~fgi~~PrIaV~GLNPHaGE~G~~G~EE~~iI~Pai~-~l~~----~gi~v~GP~paDt~F 270 (349)
T 4aty_A 196 RLDQRHVERAARAAVQALQLMGIAHPVVGLMGINPHAGEGGLFGRDDIDITEPVAR-KLRD----DGMTVIGPQGADLLL 270 (349)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTC-CCCCEEEECSSGGGGTTTTTCSHHHHTHHHHHH-HHHH----C-CCEEEEECHHHHT
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCccccccchHHHHHHHHHH-HHHH----CCCeEeCCCchhhhh
Confidence 4688888888877766555444 4423333234333345666 22 1111111 2211 4455443 3345433
Q ss_pred HHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCC-ceeeecCCcccCCcccccccCCCCCcChhHHH
Q 010485 333 AYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAHGTVTRHFRLHQKGQETSTNSIASI 410 (509)
Q Consensus 333 mqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~-~a~FEp~HGSAPd~~~~~IAGk~i~ANPiA~I 410 (509)
.+..| ++|+ ||=| .+---+=-|+.--+.|+.- |. ..---|.||||-| |||||+ |||.+++
T Consensus 271 -----~~~~~D~vla--MYHD----Qgl~p~K~l~f~~~vnitl-GLp~iRtS~dHGta~d-----iagkg~-a~~~s~~ 332 (349)
T 4aty_A 271 -----TNPDIDVFVA--MYHD----QGHIPVKLRAGRHSAALSI-GAGVLFSSVGHGSGFD-----IAGTLL-ADPAPLL 332 (349)
T ss_dssp -----TCTTCSEEEE--SSHH----HHHHHHHHHHTTSEEEEEE-SSSSEEEECCSCCCTT-----STTTTC-CCCHHHH
T ss_pred -----ccCCCCEEEE--cccc----cchHHHHhcccCCcEEEec-CCCeeEeCCCCChhhh-----hccCCC-CChHHHH
Confidence 23578 7777 4544 2211122233334556531 11 2345688999999 999998 9999998
Q ss_pred HHHHHHHH
Q 010485 411 FAWTRGLE 418 (509)
Q Consensus 411 lS~amML~ 418 (509)
-|.-|...
T Consensus 333 ~Ai~~a~~ 340 (349)
T 4aty_A 333 GAIRLVTT 340 (349)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87766554
No 33
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=92.01 E-value=0.085 Score=54.03 Aligned_cols=140 Identities=14% Similarity=0.038 Sum_probs=84.6
Q ss_pred ccChHHHHHHHHHHHHHHHh-CC--CCEEEEeCCccccccchhH-HHHHHHH---HHHhhhhccCCCCeeEe-eehHHHH
Q 010485 260 YNVDESIRAFAESSMSLAFS-KK--WPLYLSTKNTILKKYDGRF-KDIFQQV---YEERWRQKFEEHSIWYE-HRLIDDM 331 (509)
Q Consensus 260 ~~Tr~~ieRIar~AFe~A~~-rk--k~Vt~v~KaNVlk~tdglf-~~i~~eV---a~~eY~~~f~~PdI~~e-~~lVDa~ 331 (509)
.+|.+.+.+.++...+--++ -+ ++-..|-==|==.-..|+| +|--+.+ -+ +.++ .+|.+. -.=-|.+
T Consensus 174 ~it~e~i~~~i~~~~~~L~~~fgi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~Pai~-~~r~----~Gi~~~GP~paDT~ 248 (328)
T 1yxo_A 174 AISDERLTRVARILHADLRDKFGIAHPRILVCGLNPHAGEGGHLGREEIEVIEPCLE-RLRG----EGLDLIGPLPADTL 248 (328)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGTTTTTCSHHHHTHHHHHH-HHHT----TTCEEEEEECHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCCCCCCCCHhHHHHHHHHHH-HHHH----CCCceeCCCCchhh
Confidence 37999999999988874444 34 4544554455444345777 2221222 11 2221 456654 3345666
Q ss_pred HHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCC-ceeeecCCcccCCcccccccCCCCCcChhHH
Q 010485 332 VAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAHGTVTRHFRLHQKGQETSTNSIAS 409 (509)
Q Consensus 332 amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~-~a~FEp~HGSAPd~~~~~IAGk~i~ANPiA~ 409 (509)
-.+-.+ +.| ++|| ||= |.+---+=-+|+--+.|+.- |. ..---|-||||.| |||||+ |||.++
T Consensus 249 F~~~~~--~~~D~vla--MYH----DQGlip~K~l~F~~gVNvTl-GLP~iRTSvDHGTAfD-----IAGkG~-A~~~Sl 313 (328)
T 1yxo_A 249 FTPKHL--EHCDAVLA--MYH----DQGLPVLKYKGFGAAVNVTL-GLPIIRTSVDHGTALD-----LAGSGR-IDSGSL 313 (328)
T ss_dssp TSHHHH--TTCSEEEE--SSH----HHHHHHHHHHHTTSCEEEEE-SSSSCEEEECSCCCGG-----GTTTCC-CCCHHH
T ss_pred cccccc--cCCCEEEE--ccc----ccccHhHhhcccCcceEEec-CCCEEEecCCCCcccc-----ccCCCC-CChHHH
Confidence 555444 577 6665 333 44444445556666777742 11 2355689999999 999998 999999
Q ss_pred HHHHHHHHHH
Q 010485 410 IFAWTRGLEH 419 (509)
Q Consensus 410 IlS~amML~h 419 (509)
+-+.-+..+.
T Consensus 314 ~~Ai~~A~~~ 323 (328)
T 1yxo_A 314 QVALETAYQM 323 (328)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888766543
No 34
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=91.87 E-value=0.091 Score=53.95 Aligned_cols=139 Identities=12% Similarity=0.005 Sum_probs=82.4
Q ss_pred ccChHHHHHHHHHHHHHHHh-CC--C-CEEEEeCCccccccchhH-HH---HHHHHHHHhhhhccCCCCeeEe-eehHHH
Q 010485 260 YNVDESIRAFAESSMSLAFS-KK--W-PLYLSTKNTILKKYDGRF-KD---IFQQVYEERWRQKFEEHSIWYE-HRLIDD 330 (509)
Q Consensus 260 ~~Tr~~ieRIar~AFe~A~~-rk--k-~Vt~v~KaNVlk~tdglf-~~---i~~eVa~~eY~~~f~~PdI~~e-~~lVDa 330 (509)
.+|.+.+.+.++.+.+--++ -+ + |+-+.- =|==.-..|+| +| +....-+ +.++ .+|.++ -+--|.
T Consensus 179 ~it~e~i~~~i~~~~~~l~~~fGi~~PrIAV~g-LNPHAGE~G~~G~EE~~iI~PAi~-~lr~----~Gi~~~GP~paDt 252 (334)
T 3lxy_A 179 AITQASLHEVITILDNDLKTKFGITQPQIYVCG-LNPHAGEGGHMGHEEIDTIIPALN-TLRQ----QGINLIGPLPADT 252 (334)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTSCCSSCCEEEEC-SSGGGGGGGTTCSHHHHTHHHHHH-HHHH----TTCCEEEEECHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEe-cCCCCCCCCCCCchhHHHHHHHHH-HHHH----CCCceeCCCChHH
Confidence 36999999999988776654 33 3 454441 12112234555 22 1121111 2221 356554 445677
Q ss_pred HHHHHhhCCCcc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCC-ceeeecCCcccCCcccccccCCCCCcChhH
Q 010485 331 MVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAHGTVTRHFRLHQKGQETSTNSIA 408 (509)
Q Consensus 331 ~amqlVk~P~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~-~a~FEp~HGSAPd~~~~~IAGk~i~ANPiA 408 (509)
+-.+-.+ +.| ++||.+.+ .+---+--||+--+.|+.- |. ..---|.||||.| |||||+ |||.+
T Consensus 253 ~F~~~~~--~~~D~vlaMYHD------QGlip~K~l~F~~gVNvTl-GLP~iRTS~DHGTAfD-----IAGkG~-A~~~S 317 (334)
T 3lxy_A 253 LFQPKYL--QHADAVLAMYHD------QGLPVLKYQGFGRAVNITL-GLPFIRTSVDHGTALE-----LAATGT-ADVGS 317 (334)
T ss_dssp HTSHHHH--TTCSEEEESSHH------HHHHHHHHHHTTCCEEEEE-SSSSCEEEESSCCCGG-----GTTTTC-SCCHH
T ss_pred hcChhhh--ccCCEEEEcccc------hhhHhHHhcccCccEEEec-CCCeeeecCCCCcchh-----hccCCC-CChHH
Confidence 6655554 678 99988775 2222233344555667641 11 2345689999999 999998 99999
Q ss_pred HHHHHHHHHHH
Q 010485 409 SIFAWTRGLEH 419 (509)
Q Consensus 409 ~IlS~amML~h 419 (509)
++-+.-+..+.
T Consensus 318 ~~~Ai~~A~~~ 328 (334)
T 3lxy_A 318 FITALNLAIKM 328 (334)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98887766554
No 35
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp}
Probab=90.38 E-value=0.16 Score=52.78 Aligned_cols=66 Identities=15% Similarity=0.074 Sum_probs=42.8
Q ss_pred Ccc-EEEeCCcchhhHhhHhhhhcCCcccccccccCCCCC-ceeeecCCcccCCcccccccCCC-CCcChhHHHHHHHHH
Q 010485 340 GGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAHGTVTRHFRLHQKGQE-TSTNSIASIFAWTRG 416 (509)
Q Consensus 340 ~~F-VIVt~NLfGDILSDlaA~l~GsLGlapSanig~d~~-~a~FEp~HGSAPd~~~~~IAGk~-i~ANPiA~IlS~amM 416 (509)
+.| ++|| ||=| .+---+=-||+--+.|+.- |. ..---|.||||.| ||||| + |||.+++-+.-+.
T Consensus 294 ~~~D~vlA--MYHD----QGliplK~l~F~~gVNvTl-GLP~IRTSvDHGTAfD-----IAGkG~~-Ad~~Sl~~Ai~~A 360 (367)
T 3tsn_A 294 KNCNRLVA--MYHD----LALAPLKALYFDKSINVSL-NLPIIRVSVDHGTAFD-----KAYKNAK-INTKSYFEAAKFA 360 (367)
T ss_dssp HHCCEEEE--SSHH----HHHHHHHHHCTTTCEEEEE-SSSSCEEECCCCSCTT-----SCSSCCC-CCCHHHHHHHHHH
T ss_pred cCCCEEEE--cccc----CcchhhhhcccCccEEEec-CCCeeeecCCCCcchh-----hcCCCCc-CChHHHHHHHHHH
Confidence 467 6665 3433 3333333344555667641 11 2345688999999 99999 9 9999998888766
Q ss_pred HH
Q 010485 417 LE 418 (509)
Q Consensus 417 L~ 418 (509)
.+
T Consensus 361 ~~ 362 (367)
T 3tsn_A 361 IN 362 (367)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 36
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=61.74 E-value=1.4 Score=46.45 Aligned_cols=16 Identities=6% Similarity=-0.232 Sum_probs=15.0
Q ss_pred CCCEEEEecccCcccc
Q 010485 203 KKPICIGRHAFGDQYR 218 (509)
Q Consensus 203 ~~DivIvREnTeG~Y~ 218 (509)
+.|++|+||||||+|+
T Consensus 156 ~~D~vivREnteg~Y~ 171 (427)
T 2qfy_A 156 ATDTLIPGPGSLELVY 171 (427)
T ss_dssp CEEEEECSSEEEEEEE
T ss_pred CeeEEEeccCccceee
Confidence 5799999999999999
No 37
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A*
Probab=46.86 E-value=27 Score=38.37 Aligned_cols=116 Identities=15% Similarity=0.165 Sum_probs=71.7
Q ss_pred EecccCccccccceee--cCCCceeeeecCCCCCCceeeee-eccCCCceeeeeccChHHHHHHHHHHHHHHHhCCCCEE
Q 010485 209 GRHAFGDQYRATDTVI--KGPGKLKMVFDPEDGTGPVELDV-YNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLY 285 (509)
Q Consensus 209 vREnTeG~Y~g~e~~~--~~~g~~e~~~~~~~g~~~~~~~v-~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt 285 (509)
|-+-.+|-|++.|..+ ...+.+++.|...+|... .++- ......+|.+.++++....+-|.....+-|++.+--..
T Consensus 171 Va~M~~gDFy~~EkS~t~~~a~~~~ie~~~~~G~~~-vLK~~~~l~~gEviDat~Ms~~aL~~F~~~qi~~Ak~~gvLfS 249 (738)
T 2b0t_A 171 VATMDANDFRHNEKSIILDAADEVQIKHIAADGTET-ILKDSLKLLEGEVLDGTVLSAKALDAFLLEQVARAKAEGILFS 249 (738)
T ss_dssp EECCSSSSHHHHCEEEECSSCEEEEEEEECSSCCEE-EEEEEEEECTTCEEEEEEECHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred eeeccCCCccCcceeEEecCCCeEEEEEEcCCCcEE-EecCCCcccCCcEeehhhhcHHHHHHHHHHHHHHHHHcCceee
Confidence 3444445555544332 344456667777766432 1221 11234568899999999999999999999988764333
Q ss_pred EEeCCccccccchh-HH---HH-HHHHHHHhhhhccCCCCeeEeee
Q 010485 286 LSTKNTILKKYDGR-FK---DI-FQQVYEERWRQKFEEHSIWYEHR 326 (509)
Q Consensus 286 ~v~KaNVlk~tdgl-f~---~i-~~eVa~~eY~~~f~~PdI~~e~~ 326 (509)
+=-||+.||-+|-. |- ++ |.+|.+ .|.+.|++-+|..+.=
T Consensus 250 lHlKATMMKVSDPIiFGhaV~vf~kdvF~-k~~~~~~~lGvn~nnG 294 (738)
T 2b0t_A 250 AHLKATMMKVSDPIIFGHVVRAYFADVFA-QYGEQLLAAGLNGENG 294 (738)
T ss_dssp ECBCTTTSTTHHHHHHHHHHHHHTHHHHH-HHHHHHHHTTCSSTTH
T ss_pred hhhhhccccccCcccccchhhhhhHHHHH-HHHHHHHHcCCCcccC
Confidence 44499999988855 32 22 455655 5666666555554433
No 38
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A*
Probab=46.69 E-value=27 Score=38.42 Aligned_cols=116 Identities=15% Similarity=0.201 Sum_probs=72.4
Q ss_pred EecccCccccccceee--cCCCceeeeecCCCCCCceeeee-eccCCCceeeeeccChHHHHHHHHHHHHHHHhCCCCEE
Q 010485 209 GRHAFGDQYRATDTVI--KGPGKLKMVFDPEDGTGPVELDV-YNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLY 285 (509)
Q Consensus 209 vREnTeG~Y~g~e~~~--~~~g~~e~~~~~~~g~~~~~~~v-~~~~~~~v~~~~~~Tr~~ieRIar~AFe~A~~rkk~Vt 285 (509)
|-+-.+|-|++.|..+ ...+.+++.|...+|... .++- ......+|.+.++++....+-|.....+-|++.+--..
T Consensus 173 Va~M~~gDFy~~EkS~t~~~a~~~~ie~~~~~G~~~-vLK~~~~l~~gEviDat~Ms~~aL~~F~~~qi~~Ak~~gvLfS 251 (741)
T 1itw_A 173 VAHMDNGDFYGSEKAALIGAPGSVKIELIAKDGSST-VLKAKTSVQAGEIIDSSVMSKNALRNFIAAEIEDAKKQGVLLS 251 (741)
T ss_dssp EECCSSSSHHHHCEEEECCSSEEEEEEEEETTSCEE-EEEEEEEECTTCEEEEEEECHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred eeeccCCCccCcceeEEecCCCeEEEEEEcCCCcEE-EecCCCcccCCcEeehhhhcHHHHHHHHHHHHHHHHHcCceee
Confidence 3444445555544432 234456666776666432 1221 11234568899999999999999999999988764333
Q ss_pred EEeCCccccccchh-HH---HH-HHHHHHHhhhhccCCCCeeEeee
Q 010485 286 LSTKNTILKKYDGR-FK---DI-FQQVYEERWRQKFEEHSIWYEHR 326 (509)
Q Consensus 286 ~v~KaNVlk~tdgl-f~---~i-~~eVa~~eY~~~f~~PdI~~e~~ 326 (509)
+=-||+.||-+|-. |- ++ |.+|.+ .|.+.|++-+|..+.=
T Consensus 252 lHlKATMMKVSDPIiFGhaV~vf~kdvF~-k~~~~~~~lGvn~nnG 296 (741)
T 1itw_A 252 VHLKATMMKVSDPIMFGQIVSEFYKDALT-KHAEVLKQIGFDVNNG 296 (741)
T ss_dssp ECBCTTTSTTHHHHHHHHHHHHHTHHHHH-HTHHHHHHTTCCGGGC
T ss_pred hhhhhccccccCcccccchhhhhhHHHHH-HHHHHHHHcCCCcccC
Confidence 44499999988855 42 22 556665 5767776666655543
No 39
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=44.23 E-value=57 Score=30.10 Aligned_cols=83 Identities=13% Similarity=0.198 Sum_probs=51.7
Q ss_pred ccccEEEEcCC----CcHHHHHHHHHHHHhcCCCCeEEEEEecch-HHHhh-cCCCCcHHH---HHHHHhcCeeeecCCC
Q 010485 84 VQNPIVEMDGD----EMTRIIWQMIKDKLIFPYLDLDIKYYDLGI-LNRDA-TDDKVTVES---AEATLKYNVAIKCATI 154 (509)
Q Consensus 84 ~~~~I~vLpGD----GIGpEI~~~~~~~l~~~~~~i~~~~~~~G~-~~~~~-tG~~lp~et---leaik~~da~lkg~~~ 154 (509)
|.++|++|-|- -.++.+.+.+.+.+ .. .++++.+++.. ..++. .....|+++ .+.++++|+.+.+
T Consensus 1 M~k~I~vi~GS~R~~S~~~~la~~~~~~~-~~--~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~--- 74 (190)
T 3u7r_A 1 MVKTVAVMVGSLRKDSLNHKLMKVLQKLA-EG--RLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLAI--- 74 (190)
T ss_dssp -CEEEEEEESCCSTTCHHHHHHHHHHHHH-TT--TEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEE---
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHhc-cC--CCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEEe---
Confidence 56789999885 67888888776554 22 35555666653 11111 111246554 4678899998864
Q ss_pred CCCcchhhhhcccccCCCCchhHhhhcCc
Q 010485 155 TPDETRMKEFGLKSMWRSPNGTIRNILNG 183 (509)
Q Consensus 155 tP~~~~~~e~~L~~~~~S~n~~LRk~LdL 183 (509)
||.+. .|.-..|.+-||.
T Consensus 75 tPeYn-----------~s~pg~LKn~iDw 92 (190)
T 3u7r_A 75 TPEYN-----------RSYPGMIKNAIDW 92 (190)
T ss_dssp CCCBT-----------TBCCHHHHHHHHH
T ss_pred chhhc-----------ccCCHHHHHHHHH
Confidence 56542 3555789999995
No 40
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=32.16 E-value=21 Score=36.40 Aligned_cols=20 Identities=5% Similarity=0.074 Sum_probs=15.8
Q ss_pred cccEEEEcCC--CcHHHHHHHH
Q 010485 85 QNPIVEMDGD--EMTRIIWQMI 104 (509)
Q Consensus 85 ~~~I~vLpGD--GIGpEI~~~~ 104 (509)
+..|++-.|| ||||||+-.+
T Consensus 2 ~~~iaIT~GDpaGIGpEii~ka 23 (328)
T 1yxo_A 2 SLRFALTPGEPAGIGPDLCLLL 23 (328)
T ss_dssp CCCEEEECCSTTSSHHHHHHHH
T ss_pred CCEEEEcCCCCcchhHHHHHHH
Confidence 3358999999 9999987543
No 41
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=29.43 E-value=25 Score=35.90 Aligned_cols=19 Identities=16% Similarity=0.083 Sum_probs=15.7
Q ss_pred ccEEEEcCC--CcHHHHHHHH
Q 010485 86 NPIVEMDGD--EMTRIIWQMI 104 (509)
Q Consensus 86 ~~I~vLpGD--GIGpEI~~~~ 104 (509)
+||++-.|| ||||||+-.+
T Consensus 7 ~~iaIT~GDpaGIGpEii~ka 27 (330)
T 2hi1_A 7 KTVAITMGDPAGIGPEIIVKA 27 (330)
T ss_dssp CCEEEECCCTTTTHHHHHHHH
T ss_pred CCEEEcCCCCcchhHHHHHHH
Confidence 359999999 9999987644
No 42
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=27.80 E-value=1.7e+02 Score=26.82 Aligned_cols=84 Identities=18% Similarity=0.112 Sum_probs=53.7
Q ss_pred ccEEEEcCC----CcHHHHHHHHHH----HHhcCCCCeEEEEEecchHHH---hhcCCCCc-H---HHHHHHHhcCeeee
Q 010485 86 NPIVEMDGD----EMTRIIWQMIKD----KLIFPYLDLDIKYYDLGILNR---DATDDKVT-V---ESAEATLKYNVAIK 150 (509)
Q Consensus 86 ~~I~vLpGD----GIGpEI~~~~~~----~l~~~~~~i~~~~~~~G~~~~---~~tG~~lp-~---etleaik~~da~lk 150 (509)
.+|++|-|- +....+.+.+.+ .+.+.+..++.+.++++.... +......+ + +..+.++++|+++.
T Consensus 12 ~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~ivi 91 (191)
T 3k1y_A 12 RTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDGLVV 91 (191)
T ss_dssp EEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHHHCSEEEE
T ss_pred ceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHHHCCEEEE
Confidence 467788775 888888887776 454444456777778776442 21111223 3 46678889999887
Q ss_pred cCCCCCCcchhhhhcccccCCCCchhHhhhcCc
Q 010485 151 CATITPDETRMKEFGLKSMWRSPNGTIRNILNG 183 (509)
Q Consensus 151 g~~~tP~~~~~~e~~L~~~~~S~n~~LRk~LdL 183 (509)
+ +|.+ |.++...|..-||-
T Consensus 92 ~---sP~Y-----------~~~~~~~lK~~iD~ 110 (191)
T 3k1y_A 92 A---TPVF-----------KASYTGLFKMFFDI 110 (191)
T ss_dssp E---EECB-----------TTBSCHHHHHHHHH
T ss_pred E---cCcc-----------CCcCcHHHHHHHHH
Confidence 6 3543 34556788888884
No 43
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400}
Probab=23.34 E-value=36 Score=34.60 Aligned_cols=19 Identities=16% Similarity=0.013 Sum_probs=15.8
Q ss_pred cEEEEcCC--CcHHHHHHHHH
Q 010485 87 PIVEMDGD--EMTRIIWQMIK 105 (509)
Q Consensus 87 ~I~vLpGD--GIGpEI~~~~~ 105 (509)
+|++-.|| ||||||+=.+.
T Consensus 10 kIaIT~GDPaGIGpEIilKa~ 30 (349)
T 4aty_A 10 TVALAIGDPNGIGPEIAVKAA 30 (349)
T ss_dssp CEEEECCCTTSSHHHHHHHHH
T ss_pred eEEEECCCcchhHHHHHHHHH
Confidence 59999999 99999875443
No 44
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=22.50 E-value=39 Score=34.47 Aligned_cols=17 Identities=18% Similarity=0.134 Sum_probs=14.5
Q ss_pred ccEEEEcCC--CcHHHHHH
Q 010485 86 NPIVEMDGD--EMTRIIWQ 102 (509)
Q Consensus 86 ~~I~vLpGD--GIGpEI~~ 102 (509)
.+|++-.|| ||||||+=
T Consensus 9 ~~iaiT~GDpaGIGpEiil 27 (334)
T 3lxy_A 9 NRLVITPGEPAGVGPDLAI 27 (334)
T ss_dssp SEEEEECCCTTSSHHHHHH
T ss_pred CEEEEeCCCCccchHHHHH
Confidence 368999999 99999864
Done!