Query 010486
Match_columns 509
No_of_seqs 213 out of 1957
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 01:05:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010486.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010486hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00165 aspartyl protease; Pr 100.0 5.2E-66 1.1E-70 547.8 42.7 365 27-509 63-447 (482)
2 cd05490 Cathepsin_D2 Cathepsin 100.0 9.7E-63 2.1E-67 503.5 38.4 324 79-507 1-325 (325)
3 cd06098 phytepsin Phytepsin, a 100.0 1E-62 2.3E-67 501.5 36.1 317 75-507 1-317 (317)
4 cd05486 Cathespin_E Cathepsin 100.0 3.6E-62 7.8E-67 497.4 35.9 316 85-507 1-316 (316)
5 cd05487 renin_like Renin stimu 100.0 1.9E-61 4.1E-66 494.2 38.8 325 77-508 1-326 (326)
6 cd05485 Cathepsin_D_like Cathe 100.0 9.4E-61 2E-65 489.5 38.3 327 75-507 2-329 (329)
7 cd05478 pepsin_A Pepsin A, asp 100.0 1.2E-60 2.6E-65 486.5 37.4 316 76-507 2-317 (317)
8 cd05477 gastricsin Gastricsins 100.0 3.9E-60 8.4E-65 482.9 38.6 317 82-508 1-318 (318)
9 cd05488 Proteinase_A_fungi Fun 100.0 3.8E-60 8.3E-65 483.4 37.7 320 75-507 1-320 (320)
10 PTZ00147 plasmepsin-1; Provisi 100.0 6.8E-59 1.5E-63 489.9 39.6 323 71-509 126-450 (453)
11 PTZ00013 plasmepsin 4 (PM4); P 100.0 2.2E-58 4.9E-63 485.1 42.3 324 70-509 124-449 (450)
12 PF00026 Asp: Eukaryotic aspar 100.0 2.1E-55 4.6E-60 446.4 29.8 316 84-508 1-317 (317)
13 cd06097 Aspergillopepsin_like 100.0 5.9E-52 1.3E-56 414.9 31.1 272 85-507 1-278 (278)
14 cd05473 beta_secretase_like Be 100.0 1.8E-50 4E-55 419.2 31.6 316 83-509 2-346 (364)
15 KOG1339 Aspartyl protease [Pos 100.0 2.3E-50 5E-55 422.7 32.3 320 73-508 35-392 (398)
16 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.3E-49 2.9E-54 406.7 30.0 282 83-508 2-323 (326)
17 PLN03146 aspartyl protease fam 100.0 3.9E-49 8.6E-54 416.2 33.9 307 81-508 81-426 (431)
18 cd05474 SAP_like SAPs, pepsin- 100.0 4.5E-49 9.7E-54 396.9 32.7 278 84-508 2-295 (295)
19 cd05472 cnd41_like Chloroplast 100.0 2.4E-48 5.2E-53 392.8 29.1 287 84-508 1-297 (299)
20 cd05471 pepsin_like Pepsin-lik 100.0 7.3E-46 1.6E-50 370.0 33.9 279 85-507 1-283 (283)
21 cd05476 pepsin_A_like_plant Ch 100.0 2.1E-45 4.5E-50 365.1 28.1 248 84-509 1-264 (265)
22 cd05475 nucellin_like Nucellin 100.0 2.7E-45 5.9E-50 365.8 28.5 258 83-509 1-272 (273)
23 cd05489 xylanase_inhibitor_I_l 100.0 2.7E-41 5.9E-46 349.1 27.4 314 91-508 2-361 (362)
24 cd05470 pepsin_retropepsin_lik 99.9 3E-22 6.5E-27 171.6 13.2 108 87-195 1-109 (109)
25 PF14543 TAXi_N: Xylanase inhi 99.9 1.6E-20 3.6E-25 173.0 16.8 136 85-243 1-164 (164)
26 PF14541 TAXi_C: Xylanase inhi 99.8 5.7E-18 1.2E-22 155.7 14.0 150 269-507 4-161 (161)
27 cd05483 retropepsin_like_bacte 98.0 1.6E-05 3.4E-10 65.6 6.9 92 84-197 2-94 (96)
28 PF05184 SapB_1: Saposin-like 97.4 0.00012 2.6E-09 50.3 2.4 38 381-418 2-39 (39)
29 TIGR02281 clan_AA_DTGA clan AA 97.3 0.0017 3.7E-08 56.6 9.1 101 75-197 2-103 (121)
30 PF13650 Asp_protease_2: Aspar 96.7 0.0095 2.1E-07 48.2 8.5 88 87-196 1-89 (90)
31 PF11925 DUF3443: Protein of u 95.4 0.091 2E-06 53.6 9.6 196 86-304 25-272 (370)
32 cd05479 RP_DDI RP_DDI; retrope 95.4 0.094 2E-06 45.8 8.6 92 81-197 13-107 (124)
33 COG3577 Predicted aspartyl pro 94.4 0.5 1.1E-05 44.5 10.7 105 71-197 92-197 (215)
34 cd05484 retropepsin_like_LTR_2 94.2 0.19 4.2E-06 41.1 6.9 75 85-177 1-78 (91)
35 PF03489 SapB_2: Saposin-like 93.4 0.02 4.3E-07 38.2 -0.2 33 322-354 3-35 (35)
36 KOG1340 Prosaposin [Lipid tran 93.0 0.072 1.6E-06 51.0 2.8 89 321-418 77-166 (218)
37 cd05479 RP_DDI RP_DDI; retrope 92.3 0.8 1.7E-05 39.9 8.3 24 481-504 100-123 (124)
38 PF08284 RVP_2: Retroviral asp 92.1 0.62 1.3E-05 41.4 7.5 27 481-507 105-131 (135)
39 TIGR02281 clan_AA_DTGA clan AA 91.5 4.8 0.00011 34.9 12.2 30 273-309 15-44 (121)
40 cd06095 RP_RTVL_H_like Retrope 89.9 1.8 3.8E-05 35.0 7.6 81 88-197 2-84 (86)
41 PF07966 A1_Propeptide: A1 Pro 88.1 0.57 1.2E-05 29.9 2.7 27 28-54 1-27 (29)
42 smart00741 SapB Saposin (B) Do 87.1 0.52 1.1E-05 36.4 2.6 37 382-418 2-38 (76)
43 TIGR03698 clan_AA_DTGF clan AA 82.3 6.8 0.00015 33.2 7.5 24 480-503 84-107 (107)
44 PF13975 gag-asp_proteas: gag- 81.7 2.4 5.2E-05 33.1 4.1 34 81-116 5-38 (72)
45 PF12384 Peptidase_A2B: Ty3 tr 80.5 7.8 0.00017 35.4 7.4 27 287-313 45-71 (177)
46 PF13650 Asp_protease_2: Aspar 76.0 3.6 7.7E-05 32.7 3.7 29 274-309 3-31 (90)
47 PF00077 RVP: Retroviral aspar 75.2 3.9 8.4E-05 33.7 3.8 29 86-116 7-35 (100)
48 PF13975 gag-asp_proteas: gag- 68.9 8.4 0.00018 30.0 4.1 30 273-309 12-41 (72)
49 cd05484 retropepsin_like_LTR_2 65.4 8.8 0.00019 31.1 3.8 30 273-309 4-33 (91)
50 cd05483 retropepsin_like_bacte 63.2 12 0.00026 29.9 4.3 30 273-309 6-35 (96)
51 PF08284 RVP_2: Retroviral asp 62.2 50 0.0011 29.2 8.3 31 82-114 19-49 (135)
52 PF09668 Asp_protease: Asparty 61.3 13 0.00028 32.5 4.2 79 82-176 22-102 (124)
53 cd05482 HIV_retropepsin_like R 60.1 13 0.00028 30.3 3.8 27 88-116 2-28 (87)
54 cd06095 RP_RTVL_H_like Retrope 59.4 11 0.00023 30.4 3.3 29 274-309 3-31 (86)
55 PF02160 Peptidase_A3: Caulifl 58.7 18 0.00039 34.3 5.0 51 433-506 66-116 (201)
56 PF07172 GRP: Glycine rich pro 56.3 8.4 0.00018 32.0 2.1 24 1-24 1-24 (95)
57 smart00741 SapB Saposin (B) Do 45.2 7.4 0.00016 29.7 0.1 35 320-354 42-76 (76)
58 PF00077 RVP: Retroviral aspar 41.8 25 0.00053 28.8 2.8 27 273-306 9-35 (100)
59 PF12384 Peptidase_A2B: Ty3 tr 36.3 44 0.00094 30.7 3.6 29 86-114 34-62 (177)
60 COG3577 Predicted aspartyl pro 35.5 67 0.0014 30.6 4.8 30 273-309 109-138 (215)
61 cd05481 retropepsin_like_LTR_1 34.2 43 0.00092 27.5 3.0 23 288-310 11-33 (93)
62 PF09668 Asp_protease: Asparty 32.7 52 0.0011 28.8 3.4 30 273-309 28-57 (124)
63 KOG1340 Prosaposin [Lipid tran 29.8 18 0.0004 34.7 0.2 43 313-355 162-204 (218)
64 COG5550 Predicted aspartyl pro 29.5 33 0.00071 29.9 1.6 22 289-310 28-50 (125)
65 cd06094 RP_Saci_like RP_Saci_l 29.4 2.1E+02 0.0045 23.5 6.1 22 96-117 8-29 (89)
66 TIGR03698 clan_AA_DTGF clan AA 26.9 72 0.0016 26.8 3.3 66 87-168 2-73 (107)
67 PRK02710 plastocyanin; Provisi 21.3 1.2E+02 0.0027 25.9 3.7 33 1-33 1-35 (119)
68 PRK14758 hypothetical protein; 21.0 1.3E+02 0.0028 18.7 2.6 22 1-22 1-22 (27)
No 1
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=5.2e-66 Score=547.80 Aligned_cols=365 Identities=35% Similarity=0.665 Sum_probs=307.0
Q ss_pred ceEEEeeEeecCchhhhHHhh---hhhHhhhccCCcccccccccCCCCceeEeceecCCceEEEEEEeCCCCceEEEEEe
Q 010486 27 GLRRIGLKKRRLDLHSLNAAR---ITRKERYMGGAGVSGVRHRLGDSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFD 103 (509)
Q Consensus 27 ~~~rvpL~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~Y~~~i~IGtPpQ~~~v~lD 103 (509)
.++|+||+|.++.+....+.+ +..++.. .|.+.............++|.|+.|.+|+++|+||||||+|+|++|
T Consensus 63 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~D 139 (482)
T PTZ00165 63 PAHKVELHRFALLKKKRKKNSEKGYISRVLT---KHKYLETKDPNGLQYLQQDLLNFHNSQYFGEIQVGTPPKSFVVVFD 139 (482)
T ss_pred heEEeeeEEcchHHHhhhhHHHHHhhhhhhh---ccccccccccccccccceecccccCCeEEEEEEeCCCCceEEEEEe
Confidence 589999999887776544331 1112211 0111100100011346799999999999999999999999999999
Q ss_pred CCCCcEEEeCCCCCCCcccCCCcccCCCCCCCcee--cCc---EEEEEcCCCcEEEEEEEEEEEEceEEecCeEEEEEEE
Q 010486 104 TGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTE--IGK---SCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATR 178 (509)
Q Consensus 104 TGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~--~~~---~~~~~Yg~gs~~G~~~~D~v~~gg~~~~~~~fg~a~~ 178 (509)
|||+++||++..|. ...|..|+.|++++|+||++ .+. .+.++||+|++.|.+++|+|++|+..+++|.||++..
T Consensus 140 TGSS~lWVps~~C~-~~~C~~~~~yd~s~SSTy~~~~~~~~~~~~~i~YGsGs~~G~l~~DtV~ig~l~i~~q~FG~a~~ 218 (482)
T PTZ00165 140 TGSSNLWIPSKECK-SGGCAPHRKFDPKKSSTYTKLKLGDESAETYIQYGTGECVLALGKDTVKIGGLKVKHQSIGLAIE 218 (482)
T ss_pred CCCCCEEEEchhcC-cccccccCCCCccccCCcEecCCCCccceEEEEeCCCcEEEEEEEEEEEECCEEEccEEEEEEEe
Confidence 99999999999997 66899999999999999998 555 6889999999999999999999999999999999998
Q ss_pred eCCccccccceeeEeecccccc---ccCCCCchHHHHHHcCCCCCceEEEEecCCCCCCCCcEEEECCcCCCCc--ccce
Q 010486 179 EGSLTFLLARFDGIIGLGFREI---AVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF--KGKH 253 (509)
Q Consensus 179 ~~~~~~~~~~~dGIlGLg~~~~---s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~fGgiD~~~~--~g~l 253 (509)
.++..|....+|||||||++.. +..+..|++++|++||+|++++||+||.+... .+|+|+|||+|+.++ .|++
T Consensus 219 ~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~--~~G~l~fGGiD~~~~~~~g~i 296 (482)
T PTZ00165 219 ESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLN--QPGSISFGSADPKYTLEGHKI 296 (482)
T ss_pred ccccccccccccceeecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCCC--CCCEEEeCCcCHHHcCCCCce
Confidence 7766677778999999999876 33457899999999999999999999986532 379999999999777 5789
Q ss_pred EEEecCCcCCcEEEEEEeeeEEECCeeeeeecCCceEEEcCCCcCcccCHHHHHHHHHHhCCCcceecceeehhhccchh
Q 010486 254 TYVPVTKKGYWQVNKFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDL 333 (509)
Q Consensus 254 ~~~pv~~~~~w~~~~v~l~~i~v~~~~~~~~~~~~~~iiDTGTs~i~lp~~~~~~i~~~~~~~~~~~~~c~~~~~~~~~~ 333 (509)
+|+|+.+.+||. |.+++|+++++.+..+..++.+|+||||+++++|.+++++|.+++++.
T Consensus 297 ~~~Pv~~~~yW~---i~l~~i~vgg~~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~----------------- 356 (482)
T PTZ00165 297 WWFPVISTDYWE---IEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPSSVINPLLEKIPLE----------------- 356 (482)
T ss_pred EEEEccccceEE---EEeCeEEECCEEeeecCCceEEEEcCCCccEeCCHHHHHHHHHHcCCc-----------------
Confidence 999999999999 999999999988776667889999999999999999999999988653
Q ss_pred hHHHHhhCCCCccccccccccccCCccceecceeeeeeccccccCCcccchhhhhHHHHHHHHhhhhhhHHHHhhhhhcc
Q 010486 334 IWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINEL 413 (509)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (509)
T Consensus 357 -------------------------------------------------------------------------------- 356 (482)
T PTZ00165 357 -------------------------------------------------------------------------------- 356 (482)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCceEecCCCCCCCCcEEEEECCE-----EEEECcccceEeec--ccccceeeeeeeeccCCCCCCCceEECH
Q 010486 414 CDSLPNPMGESIIDCDRIPTMPNVSFTIGDK-----IFNLSPEQYILKTG--EGIAEVCISGFMAFDLPPPRGPLWILGD 486 (509)
Q Consensus 414 c~~~~~~~~~~~~~C~~~~~~P~l~f~fgg~-----~~~l~~~~yi~~~~--~~~~~~C~~~~~~~~~~~~~~~~~ilG~ 486 (509)
.+|+...++|+|+|+|+|. +|+|+|++|+++.. ..+...|+++|+.++.+.+.++.||||+
T Consensus 357 ------------~~C~~~~~lP~itf~f~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd 424 (482)
T PTZ00165 357 ------------EDCSNKDSLPRISFVLEDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGN 424 (482)
T ss_pred ------------ccccccccCCceEEEECCCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEch
Confidence 2788777899999999764 89999999999742 3344689999999887666678999999
Q ss_pred hhhcceEEEEeCCCCeEEEEecC
Q 010486 487 VFMGVYHTVFDSGKLRIGFAEAA 509 (509)
Q Consensus 487 ~fl~~~y~vfD~~~~rIGfa~~~ 509 (509)
+|||+||+|||++++|||||+++
T Consensus 425 ~Flr~yy~VFD~~n~rIGfA~a~ 447 (482)
T PTZ00165 425 NFIRKYYSIFDRDHMMVGLVPAK 447 (482)
T ss_pred hhheeEEEEEeCCCCEEEEEeec
Confidence 99999999999999999999975
No 2
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=9.7e-63 Score=503.52 Aligned_cols=324 Identities=53% Similarity=1.050 Sum_probs=286.7
Q ss_pred ecCCceEEEEEEeCCCCceEEEEEeCCCCcEEEeCCCCCC-CcccCCCcccCCCCCCCceecCcEEEEEcCCCcEEEEEE
Q 010486 79 NFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYF-SISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFS 157 (509)
Q Consensus 79 n~~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs~~G~~~ 157 (509)
|+.|.+|+++|+||||||+++|++||||+++||+|..|.. ...|..++.|+|++|+||+..++.|.+.|++|++.|.++
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G~~~ 80 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNGTEFAIQYGSGSLSGYLS 80 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCCcEEEEEECCcEEEEEEe
Confidence 4678999999999999999999999999999999999963 247988999999999999999999999999999999999
Q ss_pred EEEEEEceEEecCeEEEEEEEeCCccccccceeeEeeccccccccCCCCchHHHHHHcCCCCCceEEEEecCCCCCCCCc
Q 010486 158 QDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGG 237 (509)
Q Consensus 158 ~D~v~~gg~~~~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G 237 (509)
+|+|+||+..++++.||++...++..+.....+||||||++..+.....|++++|++||.|.+++||+||.+..+...+|
T Consensus 81 ~D~v~~g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G 160 (325)
T cd05490 81 QDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGG 160 (325)
T ss_pred eeEEEECCEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCC
Confidence 99999999999999999998776545555678999999999888777789999999999999999999998754333479
Q ss_pred EEEECCcCCCCcccceEEEecCCcCCcEEEEEEeeeEEECCeeeeeecCCceEEEcCCCcCcccCHHHHHHHHHHhCCCc
Q 010486 238 EIVFGGVDPKHFKGKHTYVPVTKKGYWQVNKFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEG 317 (509)
Q Consensus 238 ~L~fGgiD~~~~~g~l~~~pv~~~~~w~~~~v~l~~i~v~~~~~~~~~~~~~~iiDTGTs~i~lp~~~~~~i~~~~~~~~ 317 (509)
+|+|||+|+++|.|++.|+|+.+..+|. |++++|+|++... .+..+..+||||||+++++|.+++++|.+++++.
T Consensus 161 ~l~~Gg~d~~~~~g~l~~~~~~~~~~w~---v~l~~i~vg~~~~-~~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~- 235 (325)
T cd05490 161 ELMLGGTDPKYYTGDLHYVNVTRKAYWQ---IHMDQVDVGSGLT-LCKGGCEAIVDTGTSLITGPVEEVRALQKAIGAV- 235 (325)
T ss_pred EEEECccCHHHcCCceEEEEcCcceEEE---EEeeEEEECCeee-ecCCCCEEEECCCCccccCCHHHHHHHHHHhCCc-
Confidence 9999999999999999999999889999 9999999987643 3345678999999999999999999999988653
Q ss_pred ceecceeehhhccchhhHHHHhhCCCCccccccccccccCCccceecceeeeeeccccccCCcccchhhhhHHHHHHHHh
Q 010486 318 VVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQL 397 (509)
Q Consensus 318 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (509)
T Consensus 236 -------------------------------------------------------------------------------- 235 (325)
T cd05490 236 -------------------------------------------------------------------------------- 235 (325)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhHHHHhhhhhccccCCCCCCCceEecCCCCCCCCcEEEEECCEEEEECcccceEeecccccceeeeeeeeccCCCC
Q 010486 398 KQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPP 477 (509)
Q Consensus 398 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fgg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~ 477 (509)
+...+.|.++|+....+|+|+|+|+|+.|+|+|++|+++........|+++|+..+...+
T Consensus 236 --------------------~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~ 295 (325)
T cd05490 236 --------------------PLIQGEYMIDCEKIPTLPVISFSLGGKVYPLTGEDYILKVSQRGTTICLSGFMGLDIPPP 295 (325)
T ss_pred --------------------cccCCCEEecccccccCCCEEEEECCEEEEEChHHeEEeccCCCCCEEeeEEEECCCCCC
Confidence 112356889999888899999999999999999999997654445689999988776555
Q ss_pred CCCceEECHhhhcceEEEEeCCCCeEEEEe
Q 010486 478 RGPLWILGDVFMGVYHTVFDSGKLRIGFAE 507 (509)
Q Consensus 478 ~~~~~ilG~~fl~~~y~vfD~~~~rIGfa~ 507 (509)
.++.||||++|||++|+|||++++|||||+
T Consensus 296 ~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 296 AGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred CCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 567899999999999999999999999996
No 3
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=1e-62 Score=501.55 Aligned_cols=317 Identities=78% Similarity=1.376 Sum_probs=284.5
Q ss_pred EeceecCCceEEEEEEeCCCCceEEEEEeCCCCcEEEeCCCCCCCcccCCCcccCCCCCCCceecCcEEEEEcCCCcEEE
Q 010486 75 LPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISG 154 (509)
Q Consensus 75 ~~l~n~~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs~~G 154 (509)
++|.|+.+.+|+++|+||||||+++|++||||+++||++..|.....|..++.|+|++|+||+..+..+.+.|++|++.|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G 80 (317)
T cd06098 1 VALKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSSTYKKNGTSASIQYGTGSISG 80 (317)
T ss_pred CcccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccccCcCCcccCCCcccCCCEEEEEcCCceEEE
Confidence 57899999999999999999999999999999999999999964468999999999999999999999999999999999
Q ss_pred EEEEEEEEEceEEecCeEEEEEEEeCCccccccceeeEeeccccccccCCCCchHHHHHHcCCCCCceEEEEecCCCCCC
Q 010486 155 FFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAE 234 (509)
Q Consensus 155 ~~~~D~v~~gg~~~~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~ 234 (509)
.+++|+|++|+..++++.||++....+..|....++||||||++..+..+..|++++|++||+|++++||+||.+.....
T Consensus 81 ~~~~D~v~ig~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~ 160 (317)
T cd06098 81 FFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEE 160 (317)
T ss_pred EEEeeEEEECCEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCC
Confidence 99999999999999999999998776655666788999999999887777788999999999999999999998754333
Q ss_pred CCcEEEECCcCCCCcccceEEEecCCcCCcEEEEEEeeeEEECCeeeeeecCCceEEEcCCCcCcccCHHHHHHHHHHhC
Q 010486 235 EGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQVNKFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG 314 (509)
Q Consensus 235 ~~G~L~fGgiD~~~~~g~l~~~pv~~~~~w~~~~v~l~~i~v~~~~~~~~~~~~~~iiDTGTs~i~lp~~~~~~i~~~~~ 314 (509)
.+|+|+|||+|+++|.|+++|+|+...+||. |.+++|+|+++.+..+..+..++|||||+++++|++++++|.
T Consensus 161 ~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~---v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~~~~~i~---- 233 (317)
T cd06098 161 EGGELVFGGVDPKHFKGEHTYVPVTRKGYWQ---FEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTTIVTQIN---- 233 (317)
T ss_pred CCcEEEECccChhhcccceEEEecCcCcEEE---EEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHHHHHhhh----
Confidence 4899999999999999999999999889999 999999999988766667788999999999999998765431
Q ss_pred CCcceecceeehhhccchhhHHHHhhCCCCccccccccccccCCccceecceeeeeeccccccCCcccchhhhhHHHHHH
Q 010486 315 GEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQ 394 (509)
Q Consensus 315 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (509)
T Consensus 234 -------------------------------------------------------------------------------- 233 (317)
T cd06098 234 -------------------------------------------------------------------------------- 233 (317)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhhHHHHhhhhhccccCCCCCCCceEecCCCCCCCCcEEEEECCEEEEECcccceEeecccccceeeeeeeeccC
Q 010486 395 NQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDL 474 (509)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fgg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~ 474 (509)
|.+||+...++|+|+|+|+|++|+|+|++|+++..++....|+++|+..+.
T Consensus 234 -----------------------------~~~~C~~~~~~P~i~f~f~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~ 284 (317)
T cd06098 234 -----------------------------SAVDCNSLSSMPNVSFTIGGKTFELTPEQYILKVGEGAAAQCISGFTALDV 284 (317)
T ss_pred -----------------------------ccCCccccccCCcEEEEECCEEEEEChHHeEEeecCCCCCEEeceEEECCC
Confidence 345898777899999999999999999999998765555689999988775
Q ss_pred CCCCCCceEECHhhhcceEEEEeCCCCeEEEEe
Q 010486 475 PPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE 507 (509)
Q Consensus 475 ~~~~~~~~ilG~~fl~~~y~vfD~~~~rIGfa~ 507 (509)
..+.++.||||++|||++|+|||++++|||||+
T Consensus 285 ~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 285 PPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred CCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 555566899999999999999999999999995
No 4
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=3.6e-62 Score=497.43 Aligned_cols=316 Identities=47% Similarity=0.910 Sum_probs=281.9
Q ss_pred EEEEEEeCCCCceEEEEEeCCCCcEEEeCCCCCCCcccCCCcccCCCCCCCceecCcEEEEEcCCCcEEEEEEEEEEEEc
Q 010486 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQDNVEVG 164 (509)
Q Consensus 85 Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs~~G~~~~D~v~~g 164 (509)
|+++|+||||||+++|++||||+++||++..|. ...|..++.|+|++|+||+..++++.+.|++|++.|.+++|+|+++
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G~~~~D~v~ig 79 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCT-SQACTKHNRFQPSESSTYVSNGEAFSIQYGTGSLTGIIGIDQVTVE 79 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCC-CcccCccceECCCCCcccccCCcEEEEEeCCcEEEEEeeecEEEEC
Confidence 899999999999999999999999999999997 5689999999999999999999999999999999999999999999
Q ss_pred eEEecCeEEEEEEEeCCccccccceeeEeeccccccccCCCCchHHHHHHcCCCCCceEEEEecCCCCCCCCcEEEECCc
Q 010486 165 DVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGV 244 (509)
Q Consensus 165 g~~~~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~fGgi 244 (509)
+..++++.||++..+.+..|....++||||||++..+..+..|++++|++||+|++++||+||.+.++...+|+|+|||+
T Consensus 80 ~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~ 159 (316)
T cd05486 80 GITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGF 159 (316)
T ss_pred CEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEccc
Confidence 99999999999887665555566789999999998877778889999999999999999999987543334799999999
Q ss_pred CCCCcccceEEEecCCcCCcEEEEEEeeeEEECCeeeeeecCCceEEEcCCCcCcccCHHHHHHHHHHhCCCcceeccee
Q 010486 245 DPKHFKGKHTYVPVTKKGYWQVNKFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECK 324 (509)
Q Consensus 245 D~~~~~g~l~~~pv~~~~~w~~~~v~l~~i~v~~~~~~~~~~~~~~iiDTGTs~i~lp~~~~~~i~~~~~~~~~~~~~c~ 324 (509)
|+++|.|+++|+|+.+.+||. |.+++|+|+++.+. ...+..++|||||+++++|++++++|.+.+++.
T Consensus 160 d~~~~~g~l~~~pi~~~~~w~---v~l~~i~v~g~~~~-~~~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~-------- 227 (316)
T cd05486 160 DTSRFSGQLNWVPVTVQGYWQ---IQLDNIQVGGTVIF-CSDGCQAIVDTGTSLITGPSGDIKQLQNYIGAT-------- 227 (316)
T ss_pred CHHHcccceEEEECCCceEEE---EEeeEEEEecceEe-cCCCCEEEECCCcchhhcCHHHHHHHHHHhCCc--------
Confidence 999999999999999999999 99999999998763 345678999999999999999999998888654
Q ss_pred ehhhccchhhHHHHhhCCCCccccccccccccCCccceecceeeeeeccccccCCcccchhhhhHHHHHHHHhhhhhhHH
Q 010486 325 LVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKE 404 (509)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (509)
T Consensus 228 -------------------------------------------------------------------------------- 227 (316)
T cd05486 228 -------------------------------------------------------------------------------- 227 (316)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhccccCCCCCCCceEecCCCCCCCCcEEEEECCEEEEECcccceEeecccccceeeeeeeeccCCCCCCCceEE
Q 010486 405 KVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWIL 484 (509)
Q Consensus 405 ~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fgg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~il 484 (509)
...+.|.+||+....+|+|+|+|+|++++|+|++|++.....+...|+++|+..+.....++.|||
T Consensus 228 --------------~~~~~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~IL 293 (316)
T cd05486 228 --------------ATDGEYGVDCSTLSLMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWIL 293 (316)
T ss_pred --------------ccCCcEEEeccccccCCCEEEEECCEEEEeCHHHeEEecccCCCCEEeeEEEECCCCCCCCCeEEE
Confidence 113568899998888999999999999999999999875333456899999887654445568999
Q ss_pred CHhhhcceEEEEeCCCCeEEEEe
Q 010486 485 GDVFMGVYHTVFDSGKLRIGFAE 507 (509)
Q Consensus 485 G~~fl~~~y~vfD~~~~rIGfa~ 507 (509)
|++|||++|+|||++++|||||+
T Consensus 294 Gd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 294 GDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred chHHhcceEEEEeCCCCEeeccC
Confidence 99999999999999999999996
No 5
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=1.9e-61 Score=494.19 Aligned_cols=325 Identities=45% Similarity=0.935 Sum_probs=288.2
Q ss_pred ceecCCceEEEEEEeCCCCceEEEEEeCCCCcEEEeCCCCCC-CcccCCCcccCCCCCCCceecCcEEEEEcCCCcEEEE
Q 010486 77 LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYF-SISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGF 155 (509)
Q Consensus 77 l~n~~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs~~G~ 155 (509)
|.|+.+.+|+++|+||||||+++|++||||+++||++..|.. ...|..++.|+|++|+||+..++.|.+.|++|++.|.
T Consensus 1 ~~~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~~~~~~~Yg~g~~~G~ 80 (326)
T cd05487 1 LTNYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENGTEFTIHYASGTVKGF 80 (326)
T ss_pred CcccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECCEEEEEEeCCceEEEE
Confidence 467889999999999999999999999999999999999963 1478889999999999999999999999999999999
Q ss_pred EEEEEEEEceEEecCeEEEEEEEeCCccccccceeeEeeccccccccCCCCchHHHHHHcCCCCCceEEEEecCCCCCCC
Q 010486 156 FSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEE 235 (509)
Q Consensus 156 ~~~D~v~~gg~~~~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~ 235 (509)
+++|+|++|+..+. +.||++.......+.....+||||||++..+..+..|++++|++||.|++++||+||.+..+...
T Consensus 81 ~~~D~v~~g~~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~ 159 (326)
T cd05487 81 LSQDIVTVGGIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSL 159 (326)
T ss_pred EeeeEEEECCEEee-EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCC
Confidence 99999999998874 88999987654445556789999999988777677899999999999999999999987643344
Q ss_pred CcEEEECCcCCCCcccceEEEecCCcCCcEEEEEEeeeEEECCeeeeeecCCceEEEcCCCcCcccCHHHHHHHHHHhCC
Q 010486 236 GGEIVFGGVDPKHFKGKHTYVPVTKKGYWQVNKFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 315 (509)
Q Consensus 236 ~G~L~fGgiD~~~~~g~l~~~pv~~~~~w~~~~v~l~~i~v~~~~~~~~~~~~~~iiDTGTs~i~lp~~~~~~i~~~~~~ 315 (509)
.|+|+|||+|+++|.|+++|+|+...++|+ |.+++++++++.+. +..+..++|||||+++++|.++++++++++++
T Consensus 160 ~G~l~fGg~d~~~y~g~l~~~~~~~~~~w~---v~l~~i~vg~~~~~-~~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~ 235 (326)
T cd05487 160 GGEIVLGGSDPQHYQGDFHYINTSKTGFWQ---IQMKGVSVGSSTLL-CEDGCTAVVDTGASFISGPTSSISKLMEALGA 235 (326)
T ss_pred CcEEEECCcChhhccCceEEEECCcCceEE---EEecEEEECCEEEe-cCCCCEEEECCCccchhCcHHHHHHHHHHhCC
Confidence 899999999999999999999999999999 99999999998764 34567899999999999999999999999876
Q ss_pred CcceecceeehhhccchhhHHHHhhCCCCccccccccccccCCccceecceeeeeeccccccCCcccchhhhhHHHHHHH
Q 010486 316 EGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQN 395 (509)
Q Consensus 316 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (509)
..
T Consensus 236 ~~------------------------------------------------------------------------------ 237 (326)
T cd05487 236 KE------------------------------------------------------------------------------ 237 (326)
T ss_pred cc------------------------------------------------------------------------------
Confidence 50
Q ss_pred HhhhhhhHHHHhhhhhccccCCCCCCCceEecCCCCCCCCcEEEEECCEEEEECcccceEeecccccceeeeeeeeccCC
Q 010486 396 QLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLP 475 (509)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fgg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~ 475 (509)
..+.|.+||+....+|+|+|+|++++|+|++++|+++..+.....|+++|+..+..
T Consensus 238 ------------------------~~~~y~~~C~~~~~~P~i~f~fgg~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~~ 293 (326)
T cd05487 238 ------------------------RLGDYVVKCNEVPTLPDISFHLGGKEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIP 293 (326)
T ss_pred ------------------------cCCCEEEeccccCCCCCEEEEECCEEEEeCHHHhEEeccCCCCCEEEEEEEeCCCC
Confidence 03468899998888999999999999999999999987655567899999987754
Q ss_pred CCCCCceEECHhhhcceEEEEeCCCCeEEEEec
Q 010486 476 PPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 508 (509)
Q Consensus 476 ~~~~~~~ilG~~fl~~~y~vfD~~~~rIGfa~~ 508 (509)
.+.++.||||++|||++|+|||++++|||||+|
T Consensus 294 ~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 294 PPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred CCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 445568999999999999999999999999986
No 6
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=9.4e-61 Score=489.54 Aligned_cols=327 Identities=54% Similarity=1.038 Sum_probs=290.4
Q ss_pred EeceecCCceEEEEEEeCCCCceEEEEEeCCCCcEEEeCCCCCC-CcccCCCcccCCCCCCCceecCcEEEEEcCCCcEE
Q 010486 75 LPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYF-SISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSIS 153 (509)
Q Consensus 75 ~~l~n~~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs~~ 153 (509)
.+|+|+.+.+|+++|+||||+|++.|++||||+++||+|..|.. ...|..++.|+|++|+|++..++.|.+.|++|++.
T Consensus 2 ~~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~~~~~i~Y~~g~~~ 81 (329)
T cd05485 2 EPLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNGTEFAIQYGSGSLS 81 (329)
T ss_pred ccceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECCeEEEEEECCceEE
Confidence 47899999999999999999999999999999999999999963 23688888999999999999999999999999999
Q ss_pred EEEEEEEEEEceEEecCeEEEEEEEeCCccccccceeeEeeccccccccCCCCchHHHHHHcCCCCCceEEEEecCCCCC
Q 010486 154 GFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDA 233 (509)
Q Consensus 154 G~~~~D~v~~gg~~~~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~ 233 (509)
|.+++|++++|+..++++.||++..+.+..+.....+||||||+...+..+..|++.+|++||+|++++||+||.+....
T Consensus 82 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~ 161 (329)
T cd05485 82 GFLSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSA 161 (329)
T ss_pred EEEecCcEEECCEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCC
Confidence 99999999999999999999999876654455567899999999988777778899999999999999999999875433
Q ss_pred CCCcEEEECCcCCCCcccceEEEecCCcCCcEEEEEEeeeEEECCeeeeeecCCceEEEcCCCcCcccCHHHHHHHHHHh
Q 010486 234 EEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQVNKFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAI 313 (509)
Q Consensus 234 ~~~G~L~fGgiD~~~~~g~l~~~pv~~~~~w~~~~v~l~~i~v~~~~~~~~~~~~~~iiDTGTs~i~lp~~~~~~i~~~~ 313 (509)
..+|+|+|||+|+++|.|+++|+|+...++|. |.++++.++++... ..+..+||||||+++++|++++++|.+++
T Consensus 162 ~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~---v~~~~i~v~~~~~~--~~~~~~iiDSGtt~~~lP~~~~~~l~~~~ 236 (329)
T cd05485 162 KEGGELILGGSDPKHYTGNFTYLPVTRKGYWQ---FKMDSVSVGEGEFC--SGGCQAIADTGTSLIAGPVDEIEKLNNAI 236 (329)
T ss_pred CCCcEEEEcccCHHHcccceEEEEcCCceEEE---EEeeEEEECCeeec--CCCcEEEEccCCcceeCCHHHHHHHHHHh
Confidence 34799999999999999999999999899999 99999999998653 45678999999999999999999999988
Q ss_pred CCCcceecceeehhhccchhhHHHHhhCCCCccccccccccccCCccceecceeeeeeccccccCCcccchhhhhHHHHH
Q 010486 314 GGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWV 393 (509)
Q Consensus 314 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (509)
++..
T Consensus 237 ~~~~---------------------------------------------------------------------------- 240 (329)
T cd05485 237 GAKP---------------------------------------------------------------------------- 240 (329)
T ss_pred CCcc----------------------------------------------------------------------------
Confidence 6541
Q ss_pred HHHhhhhhhHHHHhhhhhccccCCCCCCCceEecCCCCCCCCcEEEEECCEEEEECcccceEeecccccceeeeeeeecc
Q 010486 394 QNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFD 473 (509)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fgg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~ 473 (509)
...+.|.+||+....+|+|+|+|+|++|+|+|++|+++....+...|+++|+..+
T Consensus 241 -------------------------~~~~~~~~~C~~~~~~p~i~f~fgg~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~ 295 (329)
T cd05485 241 -------------------------IIGGEYMVNCSAIPSLPDITFVLGGKSFSLTGKDYVLKVTQMGQTICLSGFMGID 295 (329)
T ss_pred -------------------------ccCCcEEEeccccccCCcEEEEECCEEeEEChHHeEEEecCCCCCEEeeeEEECc
Confidence 0134688999988789999999999999999999999876555578999998776
Q ss_pred CCCCCCCceEECHhhhcceEEEEeCCCCeEEEEe
Q 010486 474 LPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE 507 (509)
Q Consensus 474 ~~~~~~~~~ilG~~fl~~~y~vfD~~~~rIGfa~ 507 (509)
.+...++.||||++|||++|+|||++++|||||.
T Consensus 296 ~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 296 IPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred CCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 5544556899999999999999999999999984
No 7
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.2e-60 Score=486.45 Aligned_cols=316 Identities=45% Similarity=0.892 Sum_probs=282.8
Q ss_pred eceecCCceEEEEEEeCCCCceEEEEEeCCCCcEEEeCCCCCCCcccCCCcccCCCCCCCceecCcEEEEEcCCCcEEEE
Q 010486 76 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGF 155 (509)
Q Consensus 76 ~l~n~~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs~~G~ 155 (509)
||+|+.+.+|+++|+||||||++.|++||||+++||+|..|. ...|..++.|+|++|+|++..++.+.+.|++|++.|.
T Consensus 2 ~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~-~~~c~~~~~f~~~~Sst~~~~~~~~~~~yg~gs~~G~ 80 (317)
T cd05478 2 PLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCS-SQACSNHNRFNPRQSSTYQSTGQPLSIQYGTGSMTGI 80 (317)
T ss_pred ccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCC-cccccccCcCCCCCCcceeeCCcEEEEEECCceEEEE
Confidence 789999999999999999999999999999999999999997 5579889999999999999999999999999999999
Q ss_pred EEEEEEEEceEEecCeEEEEEEEeCCccccccceeeEeeccccccccCCCCchHHHHHHcCCCCCceEEEEecCCCCCCC
Q 010486 156 FSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEE 235 (509)
Q Consensus 156 ~~~D~v~~gg~~~~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~ 235 (509)
+++|+|++|+..++++.||++....+..+.....+||||||++..+..+..|++++|++||+|++++||+||.+..+ .
T Consensus 81 ~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~--~ 158 (317)
T cd05478 81 LGYDTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSSNGQ--Q 158 (317)
T ss_pred EeeeEEEECCEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCEEEEEeCCCCC--C
Confidence 99999999999999999999987655333344579999999988877778889999999999999999999988632 3
Q ss_pred CcEEEECCcCCCCcccceEEEecCCcCCcEEEEEEeeeEEECCeeeeeecCCceEEEcCCCcCcccCHHHHHHHHHHhCC
Q 010486 236 GGEIVFGGVDPKHFKGKHTYVPVTKKGYWQVNKFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 315 (509)
Q Consensus 236 ~G~L~fGgiD~~~~~g~l~~~pv~~~~~w~~~~v~l~~i~v~~~~~~~~~~~~~~iiDTGTs~i~lp~~~~~~i~~~~~~ 315 (509)
+|+|+|||+|+++|.|+++|+|+....+|. |.+++++|+++.+. ...+..++|||||+++++|++++++|.+++++
T Consensus 159 ~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~---v~l~~v~v~g~~~~-~~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~ 234 (317)
T cd05478 159 GSVVTFGGIDPSYYTGSLNWVPVTAETYWQ---ITVDSVTINGQVVA-CSGGCQAIVDTGTSLLVGPSSDIANIQSDIGA 234 (317)
T ss_pred CeEEEEcccCHHHccCceEEEECCCCcEEE---EEeeEEEECCEEEc-cCCCCEEEECCCchhhhCCHHHHHHHHHHhCC
Confidence 799999999999999999999999889999 99999999999875 23567899999999999999999999998865
Q ss_pred CcceecceeehhhccchhhHHHHhhCCCCccccccccccccCCccceecceeeeeeccccccCCcccchhhhhHHHHHHH
Q 010486 316 EGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQN 395 (509)
Q Consensus 316 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (509)
..
T Consensus 235 ~~------------------------------------------------------------------------------ 236 (317)
T cd05478 235 SQ------------------------------------------------------------------------------ 236 (317)
T ss_pred cc------------------------------------------------------------------------------
Confidence 40
Q ss_pred HhhhhhhHHHHhhhhhccccCCCCCCCceEecCCCCCCCCcEEEEECCEEEEECcccceEeecccccceeeeeeeeccCC
Q 010486 396 QLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLP 475 (509)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fgg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~ 475 (509)
...+.|.+||+....+|.|+|+|+|++|+|+|++|+.+. ...|+++|+..+
T Consensus 237 -----------------------~~~~~~~~~C~~~~~~P~~~f~f~g~~~~i~~~~y~~~~----~~~C~~~~~~~~-- 287 (317)
T cd05478 237 -----------------------NQNGEMVVNCSSISSMPDVVFTINGVQYPLPPSAYILQD----QGSCTSGFQSMG-- 287 (317)
T ss_pred -----------------------ccCCcEEeCCcCcccCCcEEEEECCEEEEECHHHheecC----CCEEeEEEEeCC--
Confidence 124568899998888999999999999999999999864 358999888543
Q ss_pred CCCCCceEECHhhhcceEEEEeCCCCeEEEEe
Q 010486 476 PPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE 507 (509)
Q Consensus 476 ~~~~~~~ilG~~fl~~~y~vfD~~~~rIGfa~ 507 (509)
..+.||||++|||++|+|||++++|||||+
T Consensus 288 --~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 288 --LGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred --CCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 235799999999999999999999999996
No 8
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=3.9e-60 Score=482.92 Aligned_cols=317 Identities=43% Similarity=0.851 Sum_probs=282.3
Q ss_pred CceEEEEEEeCCCCceEEEEEeCCCCcEEEeCCCCCCCcccCCCcccCCCCCCCceecCcEEEEEcCCCcEEEEEEEEEE
Q 010486 82 DAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQDNV 161 (509)
Q Consensus 82 ~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs~~G~~~~D~v 161 (509)
|..|+++|+||||||++.|++||||+++||++..|. ...|..++.|+|++|+||+..++.|.+.|++|++.|.+++|++
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~~~D~i 79 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQ-SQACTNHTKFNPSQSSTYSTNGETFSLQYGSGSLTGIFGYDTV 79 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCC-CccccccCCCCcccCCCceECCcEEEEEECCcEEEEEEEeeEE
Confidence 468999999999999999999999999999999997 5689999999999999999999999999999999999999999
Q ss_pred EEceEEecCeEEEEEEEeCCccccccceeeEeeccccccccCCCCchHHHHHHcCCCCCceEEEEecCCCCCCCCcEEEE
Q 010486 162 EVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVF 241 (509)
Q Consensus 162 ~~gg~~~~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~f 241 (509)
++|+..++++.|||+....+..+.....+||||||++..+..+..+++++|+++|.|++++||+||.+.. ...+|+|+|
T Consensus 80 ~~g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~-~~~~g~l~f 158 (318)
T cd05477 80 TVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSFYLSGQQ-GQQGGELVF 158 (318)
T ss_pred EECCEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEEEEEcCCC-CCCCCEEEE
Confidence 9999999999999998765544545667999999998887777789999999999999999999998752 223799999
Q ss_pred CCcCCCCcccceEEEecCCcCCcEEEEEEeeeEEECCeeeeeecCCceEEEcCCCcCcccCHHHHHHHHHHhCCCcceec
Q 010486 242 GGVDPKHFKGKHTYVPVTKKGYWQVNKFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSA 321 (509)
Q Consensus 242 GgiD~~~~~g~l~~~pv~~~~~w~~~~v~l~~i~v~~~~~~~~~~~~~~iiDTGTs~i~lp~~~~~~i~~~~~~~~~~~~ 321 (509)
||+|++++.|+++|+|+.+.++|. |.++++.|++.....+..+..+||||||+++++|++++++|++++++..
T Consensus 159 Gg~d~~~~~g~l~~~pv~~~~~w~---v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~---- 231 (318)
T cd05477 159 GGVDNNLYTGQIYWTPVTSETYWQ---IGIQGFQINGQATGWCSQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQ---- 231 (318)
T ss_pred cccCHHHcCCceEEEecCCceEEE---EEeeEEEECCEEecccCCCceeeECCCCccEECCHHHHHHHHHHhCCcc----
Confidence 999999999999999999999999 9999999999887655667789999999999999999999999987650
Q ss_pred ceeehhhccchhhHHHHhhCCCCccccccccccccCCccceecceeeeeeccccccCCcccchhhhhHHHHHHHHhhhhh
Q 010486 322 ECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQ 401 (509)
Q Consensus 322 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (509)
T Consensus 232 -------------------------------------------------------------------------------- 231 (318)
T cd05477 232 -------------------------------------------------------------------------------- 231 (318)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHhhhhhccccCCCCCCCceEecCCCCCCCCcEEEEECCEEEEECcccceEeecccccceeeeeeeeccCCCCC-CC
Q 010486 402 TKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPR-GP 480 (509)
Q Consensus 402 ~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fgg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~-~~ 480 (509)
...+.|.+||+....+|.|+|+|+|+++.|++++|+.+. ...|+++|+..+.+... .+
T Consensus 232 -----------------~~~~~~~~~C~~~~~~p~l~~~f~g~~~~v~~~~y~~~~----~~~C~~~i~~~~~~~~~~~~ 290 (318)
T cd05477 232 -----------------DQYGQYVVNCNNIQNLPTLTFTINGVSFPLPPSAYILQN----NGYCTVGIEPTYLPSQNGQP 290 (318)
T ss_pred -----------------ccCCCEEEeCCccccCCcEEEEECCEEEEECHHHeEecC----CCeEEEEEEecccCCCCCCc
Confidence 124568999998888999999999999999999999863 35899999866543322 34
Q ss_pred ceEECHhhhcceEEEEeCCCCeEEEEec
Q 010486 481 LWILGDVFMGVYHTVFDSGKLRIGFAEA 508 (509)
Q Consensus 481 ~~ilG~~fl~~~y~vfD~~~~rIGfa~~ 508 (509)
.||||++|||++|++||++++|||||+|
T Consensus 291 ~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 291 LWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred eEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 7999999999999999999999999986
No 9
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=3.8e-60 Score=483.36 Aligned_cols=320 Identities=45% Similarity=0.875 Sum_probs=285.0
Q ss_pred EeceecCCceEEEEEEeCCCCceEEEEEeCCCCcEEEeCCCCCCCcccCCCcccCCCCCCCceecCcEEEEEcCCCcEEE
Q 010486 75 LPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISG 154 (509)
Q Consensus 75 ~~l~n~~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs~~G 154 (509)
+||.|+.+.+|+++|+||||+|++.|++||||+++||+|..|. ...|..++.|++++|+||+..++.+.+.|++|++.|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~-~~~C~~~~~y~~~~Sst~~~~~~~~~~~y~~g~~~G 79 (320)
T cd05488 1 VPLTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCG-SIACFLHSKYDSSASSTYKANGTEFKIQYGSGSLEG 79 (320)
T ss_pred CcccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCC-CcccCCcceECCCCCcceeeCCCEEEEEECCceEEE
Confidence 4789999999999999999999999999999999999999997 568998999999999999999999999999999999
Q ss_pred EEEEEEEEEceEEecCeEEEEEEEeCCccccccceeeEeeccccccccCCCCchHHHHHHcCCCCCceEEEEecCCCCCC
Q 010486 155 FFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAE 234 (509)
Q Consensus 155 ~~~~D~v~~gg~~~~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~ 234 (509)
.+++|++++++..++++.||++....+..+.....+||||||++..+.....|.+.+|++||+|++++||+||.+.. .
T Consensus 80 ~~~~D~v~ig~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~--~ 157 (320)
T cd05488 80 FVSQDTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSE--E 157 (320)
T ss_pred EEEEeEEEECCEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEecCCC--C
Confidence 99999999999999999999998765544555678999999998887666778889999999999999999999753 2
Q ss_pred CCcEEEECCcCCCCcccceEEEecCCcCCcEEEEEEeeeEEECCeeeeeecCCceEEEcCCCcCcccCHHHHHHHHHHhC
Q 010486 235 EGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQVNKFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG 314 (509)
Q Consensus 235 ~~G~L~fGgiD~~~~~g~l~~~pv~~~~~w~~~~v~l~~i~v~~~~~~~~~~~~~~iiDTGTs~i~lp~~~~~~i~~~~~ 314 (509)
.+|+|+|||+|++++.|+++|+|+...++|. |.+++|+|+++.+.. .+..++|||||+++++|++++++|.++++
T Consensus 158 ~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~---v~l~~i~vg~~~~~~--~~~~~ivDSGtt~~~lp~~~~~~l~~~~~ 232 (320)
T cd05488 158 DGGEATFGGIDESRFTGKITWLPVRRKAYWE---VELEKIGLGDEELEL--ENTGAAIDTGTSLIALPSDLAEMLNAEIG 232 (320)
T ss_pred CCcEEEECCcCHHHcCCceEEEeCCcCcEEE---EEeCeEEECCEEecc--CCCeEEEcCCcccccCCHHHHHHHHHHhC
Confidence 3799999999999999999999999889999 999999999987643 45689999999999999999999999886
Q ss_pred CCcceecceeehhhccchhhHHHHhhCCCCccccccccccccCCccceecceeeeeeccccccCCcccchhhhhHHHHHH
Q 010486 315 GEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQ 394 (509)
Q Consensus 315 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (509)
+..
T Consensus 233 ~~~----------------------------------------------------------------------------- 235 (320)
T cd05488 233 AKK----------------------------------------------------------------------------- 235 (320)
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 540
Q ss_pred HHhhhhhhHHHHhhhhhccccCCCCCCCceEecCCCCCCCCcEEEEECCEEEEECcccceEeecccccceeeeeeeeccC
Q 010486 395 NQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDL 474 (509)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fgg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~ 474 (509)
...+.|.+||+....+|+|+|+|+|++|.|+|++|+++.. +.|++.|...+.
T Consensus 236 ------------------------~~~~~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~~----g~C~~~~~~~~~ 287 (320)
T cd05488 236 ------------------------SWNGQYTVDCSKVDSLPDLTFNFDGYNFTLGPFDYTLEVS----GSCISAFTGMDF 287 (320)
T ss_pred ------------------------ccCCcEEeeccccccCCCEEEEECCEEEEECHHHheecCC----CeEEEEEEECcC
Confidence 1245688999988889999999999999999999998532 479999987765
Q ss_pred CCCCCCceEECHhhhcceEEEEeCCCCeEEEEe
Q 010486 475 PPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE 507 (509)
Q Consensus 475 ~~~~~~~~ilG~~fl~~~y~vfD~~~~rIGfa~ 507 (509)
+...++.||||++|||++|+|||++++|||||+
T Consensus 288 ~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 288 PEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred CCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 444456899999999999999999999999996
No 10
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=6.8e-59 Score=489.89 Aligned_cols=323 Identities=34% Similarity=0.636 Sum_probs=280.9
Q ss_pred CceeEeceecCCceEEEEEEeCCCCceEEEEEeCCCCcEEEeCCCCCCCcccCCCcccCCCCCCCceecCcEEEEEcCCC
Q 010486 71 DEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSG 150 (509)
Q Consensus 71 ~~~~~~l~n~~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~g 150 (509)
....++|.|+.+.+|+++|+||||||+++|++||||+++||+|..|. ...|..++.|+|++|+||+..++.+.+.|++|
T Consensus 126 ~~~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~-~~~C~~~~~yd~s~SsT~~~~~~~f~i~Yg~G 204 (453)
T PTZ00147 126 EFDNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCT-TEGCETKNLYDSSKSKTYEKDGTKVEMNYVSG 204 (453)
T ss_pred CCCeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCC-cccccCCCccCCccCcceEECCCEEEEEeCCC
Confidence 56789999999999999999999999999999999999999999997 56899999999999999999999999999999
Q ss_pred cEEEEEEEEEEEEceEEecCeEEEEEEEeCCc--cccccceeeEeeccccccccCCCCchHHHHHHcCCCCCceEEEEec
Q 010486 151 SISGFFSQDNVEVGDVVVKDQVFIEATREGSL--TFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLN 228 (509)
Q Consensus 151 s~~G~~~~D~v~~gg~~~~~~~fg~a~~~~~~--~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~ 228 (509)
++.|.+++|+|++|+.+++ ..|+++....+. .+.....|||||||++..+.....|++.+|++||.|++++||+||.
T Consensus 205 svsG~~~~DtVtiG~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~ 283 (453)
T PTZ00147 205 TVSGFFSKDLVTIGNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLP 283 (453)
T ss_pred CEEEEEEEEEEEECCEEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCCCCccEEEEEec
Confidence 9999999999999999988 578887765431 2344578999999999887777889999999999999999999998
Q ss_pred CCCCCCCCcEEEECCcCCCCcccceEEEecCCcCCcEEEEEEeeeEEECCeeeeeecCCceEEEcCCCcCcccCHHHHHH
Q 010486 229 RDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQVNKFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTE 308 (509)
Q Consensus 229 ~~~~~~~~G~L~fGgiD~~~~~g~l~~~pv~~~~~w~~~~v~l~~i~v~~~~~~~~~~~~~~iiDTGTs~i~lp~~~~~~ 308 (509)
+... .+|.|+|||+|+++|.|+++|+|+.+..||. |.++ +.+++.. .....+||||||+++++|++++++
T Consensus 284 ~~~~--~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~---V~l~-~~vg~~~----~~~~~aIiDSGTsli~lP~~~~~a 353 (453)
T PTZ00147 284 PEDK--HKGYLTIGGIEERFYEGPLTYEKLNHDLYWQ---VDLD-VHFGNVS----SEKANVIVDSGTSVITVPTEFLNK 353 (453)
T ss_pred CCCC--CCeEEEECCcChhhcCCceEEEEcCCCceEE---EEEE-EEECCEe----cCceeEEECCCCchhcCCHHHHHH
Confidence 6532 3799999999999999999999999889999 9988 4776643 246789999999999999999999
Q ss_pred HHHHhCCCcceecceeehhhccchhhHHHHhhCCCCccccccccccccCCccceecceeeeeeccccccCCcccchhhhh
Q 010486 309 INHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEM 388 (509)
Q Consensus 309 i~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (509)
+.+++++..
T Consensus 354 i~~~l~~~~----------------------------------------------------------------------- 362 (453)
T PTZ00147 354 FVESLDVFK----------------------------------------------------------------------- 362 (453)
T ss_pred HHHHhCCee-----------------------------------------------------------------------
Confidence 999886540
Q ss_pred HHHHHHHHhhhhhhHHHHhhhhhccccCCCCCCCceEecCCCCCCCCcEEEEECCEEEEECcccceEeecccccceeeee
Q 010486 389 AVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISG 468 (509)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fgg~~~~l~~~~yi~~~~~~~~~~C~~~ 468 (509)
....+.|.++|+. ..+|+|+|.|+|..++|+|++|+.+........|+++
T Consensus 363 -----------------------------~~~~~~y~~~C~~-~~lP~~~f~f~g~~~~L~p~~yi~~~~~~~~~~C~~~ 412 (453)
T PTZ00147 363 -----------------------------VPFLPLYVTTCNN-TKLPTLEFRSPNKVYTLEPEYYLQPIEDIGSALCMLN 412 (453)
T ss_pred -----------------------------cCCCCeEEEeCCC-CCCCeEEEEECCEEEEECHHHheeccccCCCcEEEEE
Confidence 0113457889996 5799999999999999999999986554445689999
Q ss_pred eeeccCCCCCCCceEECHhhhcceEEEEeCCCCeEEEEecC
Q 010486 469 FMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 509 (509)
Q Consensus 469 ~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rIGfa~~~ 509 (509)
|++.+. ..+.||||++|||++|+|||++++|||||+|+
T Consensus 413 i~~~~~---~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 413 IIPIDL---EKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred EEECCC---CCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 987652 23479999999999999999999999999985
No 11
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=2.2e-58 Score=485.07 Aligned_cols=324 Identities=33% Similarity=0.646 Sum_probs=278.9
Q ss_pred CCceeEeceecCCceEEEEEEeCCCCceEEEEEeCCCCcEEEeCCCCCCCcccCCCcccCCCCCCCceecCcEEEEEcCC
Q 010486 70 SDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGS 149 (509)
Q Consensus 70 ~~~~~~~l~n~~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~ 149 (509)
.....++|.|+.+.+|+++|+||||||+++|++||||+++||+++.|. ...|..++.|+|+.|+|++..++.+.+.|++
T Consensus 124 ~~~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~-~~~C~~~~~yd~s~SsT~~~~~~~~~i~YG~ 202 (450)
T PTZ00013 124 SENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCD-SIGCSIKNLYDSSKSKSYEKDGTKVDITYGS 202 (450)
T ss_pred cCCCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCC-ccccccCCCccCccCcccccCCcEEEEEECC
Confidence 356789999999999999999999999999999999999999999997 5689999999999999999999999999999
Q ss_pred CcEEEEEEEEEEEEceEEecCeEEEEEEEeCC--ccccccceeeEeeccccccccCCCCchHHHHHHcCCCCCceEEEEe
Q 010486 150 GSISGFFSQDNVEVGDVVVKDQVFIEATREGS--LTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWL 227 (509)
Q Consensus 150 gs~~G~~~~D~v~~gg~~~~~~~fg~a~~~~~--~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l 227 (509)
|++.|.+++|+|++|+.+++ ..|+++..... ..+....+|||||||++..+.....|++++|++||.|++++||+||
T Consensus 203 Gsv~G~~~~Dtv~iG~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L 281 (450)
T PTZ00013 203 GTVKGFFSKDLVTLGHLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYL 281 (450)
T ss_pred ceEEEEEEEEEEEECCEEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhccCcCCcEEEEEe
Confidence 99999999999999999987 57887765432 2244557899999999988776778999999999999999999999
Q ss_pred cCCCCCCCCcEEEECCcCCCCcccceEEEecCCcCCcEEEEEEeeeEEECCeeeeeecCCceEEEcCCCcCcccCHHHHH
Q 010486 228 NRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQVNKFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVT 307 (509)
Q Consensus 228 ~~~~~~~~~G~L~fGgiD~~~~~g~l~~~pv~~~~~w~~~~v~l~~i~v~~~~~~~~~~~~~~iiDTGTs~i~lp~~~~~ 307 (509)
.+.. ..+|+|+|||+|+++|.|+++|+|+....||. |.++ +.++.... ....++|||||+++++|+++++
T Consensus 282 ~~~~--~~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~---I~l~-v~~G~~~~----~~~~aIlDSGTSli~lP~~~~~ 351 (450)
T PTZ00013 282 PVHD--VHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQ---IDLD-VHFGKQTM----QKANVIVDSGTTTITAPSEFLN 351 (450)
T ss_pred cCCC--CCCCEEEECCcCccccccceEEEEcCcCceEE---EEEE-EEECceec----cccceEECCCCccccCCHHHHH
Confidence 8653 23799999999999999999999999889999 9987 66654332 3567999999999999999999
Q ss_pred HHHHHhCCCcceecceeehhhccchhhHHHHhhCCCCccccccccccccCCccceecceeeeeeccccccCCcccchhhh
Q 010486 308 EINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACE 387 (509)
Q Consensus 308 ~i~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (509)
++++++++..
T Consensus 352 ~i~~~l~~~~---------------------------------------------------------------------- 361 (450)
T PTZ00013 352 KFFANLNVIK---------------------------------------------------------------------- 361 (450)
T ss_pred HHHHHhCCee----------------------------------------------------------------------
Confidence 9999886541
Q ss_pred hHHHHHHHHhhhhhhHHHHhhhhhccccCCCCCCCceEecCCCCCCCCcEEEEECCEEEEECcccceEeecccccceeee
Q 010486 388 MAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCIS 467 (509)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fgg~~~~l~~~~yi~~~~~~~~~~C~~ 467 (509)
....+.|.++|+. ..+|+|+|.|+|.+++|+|++|+.+........|++
T Consensus 362 ------------------------------~~~~~~y~~~C~~-~~lP~i~F~~~g~~~~L~p~~Yi~~~~~~~~~~C~~ 410 (450)
T PTZ00013 362 ------------------------------VPFLPFYVTTCDN-KEMPTLEFKSANNTYTLEPEYYMNPLLDVDDTLCMI 410 (450)
T ss_pred ------------------------------cCCCCeEEeecCC-CCCCeEEEEECCEEEEECHHHheehhccCCCCeeEE
Confidence 0113458889985 478999999999999999999997644333468999
Q ss_pred eeeeccCCCCCCCceEECHhhhcceEEEEeCCCCeEEEEecC
Q 010486 468 GFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 509 (509)
Q Consensus 468 ~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rIGfa~~~ 509 (509)
++.+.+. .++.||||++|||++|+|||++++|||||+|+
T Consensus 411 ~i~~~~~---~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 411 TMLPVDI---DDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred EEEECCC---CCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 9986542 23579999999999999999999999999985
No 12
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=2.1e-55 Score=446.43 Aligned_cols=316 Identities=38% Similarity=0.712 Sum_probs=280.9
Q ss_pred eEEEEEEeCCCCceEEEEEeCCCCcEEEeCCCCCCCcccCCCcccCCCCCCCceecCcEEEEEcCCCcEEEEEEEEEEEE
Q 010486 84 QYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQDNVEV 163 (509)
Q Consensus 84 ~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs~~G~~~~D~v~~ 163 (509)
+|+++|+||||||+++|++||||+++||++..|..+..|..+..|++..|+|++..++.+.++|++|++.|.+++|+|+|
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~~~~~~~y~~g~~~G~~~~D~v~i 80 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQGKPFSISYGDGSVSGNLVSDTVSI 80 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccceeeeeeeccCcccccccccceEee
Confidence 59999999999999999999999999999999973336788899999999999999999999999999999999999999
Q ss_pred ceEEecCeEEEEEEEeCCccccccceeeEeeccccccccCC-CCchHHHHHHcCCCCCceEEEEecCCCCCCCCcEEEEC
Q 010486 164 GDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGD-AVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFG 242 (509)
Q Consensus 164 gg~~~~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~-~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~fG 242 (509)
++..+.++.||++....+..+.....+||||||++..+... ..+++++|+++|+|++++||++|.+.. ...|+|+||
T Consensus 81 g~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~fsl~l~~~~--~~~g~l~~G 158 (317)
T PF00026_consen 81 GGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVFSLYLNPSD--SQNGSLTFG 158 (317)
T ss_dssp TTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEEEEEEESTT--SSEEEEEES
T ss_pred eeccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccccccccceeeeecc--cccchheee
Confidence 99999999999999876655667788999999988776554 788999999999999999999999874 347999999
Q ss_pred CcCCCCcccceEEEecCCcCCcEEEEEEeeeEEECCeeeeeecCCceEEEcCCCcCcccCHHHHHHHHHHhCCCcceecc
Q 010486 243 GVDPKHFKGKHTYVPVTKKGYWQVNKFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAE 322 (509)
Q Consensus 243 giD~~~~~g~l~~~pv~~~~~w~~~~v~l~~i~v~~~~~~~~~~~~~~iiDTGTs~i~lp~~~~~~i~~~~~~~~~~~~~ 322 (509)
|+|+++|+|+++|+|+...++|. +.+++|.+++... ....+..++||||++++.+|.+++++|++++++...
T Consensus 159 g~d~~~~~g~~~~~~~~~~~~w~---v~~~~i~i~~~~~-~~~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~---- 230 (317)
T PF00026_consen 159 GYDPSKYDGDLVWVPLVSSGYWS---VPLDSISIGGESV-FSSSGQQAILDTGTSYIYLPRSIFDAIIKALGGSYS---- 230 (317)
T ss_dssp SEEGGGEESEEEEEEBSSTTTTE---EEEEEEEETTEEE-EEEEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEEE----
T ss_pred ccccccccCceeccCcccccccc---ccccccccccccc-ccccceeeecccccccccccchhhHHHHhhhccccc----
Confidence 99999999999999999999999 9999999999832 234567899999999999999999999999987510
Q ss_pred eeehhhccchhhHHHHhhCCCCccccccccccccCCccceecceeeeeeccccccCCcccchhhhhHHHHHHHHhhhhhh
Q 010486 323 CKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQT 402 (509)
Q Consensus 323 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (509)
T Consensus 231 -------------------------------------------------------------------------------- 230 (317)
T PF00026_consen 231 -------------------------------------------------------------------------------- 230 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhhhccccCCCCCCCceEecCCCCCCCCcEEEEECCEEEEECcccceEeecccccceeeeeeeeccCCCCCCCce
Q 010486 403 KEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLW 482 (509)
Q Consensus 403 ~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fgg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ 482 (509)
.+.|.+||+....+|.|+|.|++.+|+|+|++|+++........|++.|+.++. ....+.|
T Consensus 231 ------------------~~~~~~~c~~~~~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~-~~~~~~~ 291 (317)
T PF00026_consen 231 ------------------DGVYSVPCNSTDSLPDLTFTFGGVTFTIPPSDYIFKIEDGNGGYCYLGIQPMDS-SDDSDDW 291 (317)
T ss_dssp ------------------CSEEEEETTGGGGSEEEEEEETTEEEEEEHHHHEEEESSTTSSEEEESEEEESS-TTSSSEE
T ss_pred ------------------ceeEEEecccccccceEEEeeCCEEEEecchHhcccccccccceeEeeeecccc-cccCCce
Confidence 157899999888899999999999999999999998877655689999998664 3455689
Q ss_pred EECHhhhcceEEEEeCCCCeEEEEec
Q 010486 483 ILGDVFMGVYHTVFDSGKLRIGFAEA 508 (509)
Q Consensus 483 ilG~~fl~~~y~vfD~~~~rIGfa~~ 508 (509)
|||.+|||++|++||++++|||||+|
T Consensus 292 iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 292 ILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred EecHHHhhceEEEEeCCCCEEEEecC
Confidence 99999999999999999999999997
No 13
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=5.9e-52 Score=414.87 Aligned_cols=272 Identities=33% Similarity=0.553 Sum_probs=236.6
Q ss_pred EEEEEEeCCCCceEEEEEeCCCCcEEEeCCCCCCCcccCCCcccCCCCCCCcee-cCcEEEEEcCCCc-EEEEEEEEEEE
Q 010486 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTE-IGKSCEINYGSGS-ISGFFSQDNVE 162 (509)
Q Consensus 85 Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~-~~~~~~~~Yg~gs-~~G~~~~D~v~ 162 (509)
|+++|+||||||++.|++||||+++||+++.|. ...|..++.|+++.|+|++. .++.+.+.|++|+ +.|.+++|+|+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~-~~~~~~~~~y~~~~Sst~~~~~~~~~~i~Y~~G~~~~G~~~~D~v~ 79 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETP-AAQQGGHKLYDPSKSSTAKLLPGATWSISYGDGSSASGIVYTDTVS 79 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCC-chhhccCCcCCCccCccceecCCcEEEEEeCCCCeEEEEEEEEEEE
Confidence 799999999999999999999999999999997 33455677899999999987 4789999999997 79999999999
Q ss_pred EceEEecCeEEEEEEEeCCccccccceeeEeeccccccccC---CCCchHHHHHHcCCCCCceEEEEecCCCCCCCCcEE
Q 010486 163 VGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVG---DAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEI 239 (509)
Q Consensus 163 ~gg~~~~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~---~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L 239 (509)
+|+..++++.||++...++..+....++||||||++..+.. ...+++++|.+++. +++||+||.+. .+|+|
T Consensus 80 ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~--~~~Fs~~l~~~----~~G~l 153 (278)
T cd06097 80 IGGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD--APLFTADLRKA----APGFY 153 (278)
T ss_pred ECCEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc--CceEEEEecCC----CCcEE
Confidence 99999999999999887654455678899999999876542 35678999999974 79999999863 27999
Q ss_pred EECCcCCCCcccceEEEecCC-cCCcEEEEEEeeeEEECCeeeeeecCCceEEEcCCCcCcccCHHHHHHHHHHhCCCcc
Q 010486 240 VFGGVDPKHFKGKHTYVPVTK-KGYWQVNKFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGV 318 (509)
Q Consensus 240 ~fGgiD~~~~~g~l~~~pv~~-~~~w~~~~v~l~~i~v~~~~~~~~~~~~~~iiDTGTs~i~lp~~~~~~i~~~~~~~~~ 318 (509)
+|||+|+++|.|+++|+|+.+ .++|. |.+++|+|+++... ...+..++|||||+++++|.+++++|++++++..
T Consensus 154 ~fGg~D~~~~~g~l~~~pi~~~~~~w~---v~l~~i~v~~~~~~-~~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~~- 228 (278)
T cd06097 154 TFGYIDESKYKGEISWTPVDNSSGFWQ---FTSTSYTVGGDAPW-SRSGFSAIADTGTTLILLPDAIVEAYYSQVPGAY- 228 (278)
T ss_pred EEeccChHHcCCceEEEEccCCCcEEE---EEEeeEEECCccee-ecCCceEEeecCCchhcCCHHHHHHHHHhCcCCc-
Confidence 999999999999999999987 78999 99999999987432 3467889999999999999999999999884330
Q ss_pred eecceeehhhccchhhHHHHhhCCCCccccccccccccCCccceecceeeeeeccccccCCcccchhhhhHHHHHHHHhh
Q 010486 319 VSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLK 398 (509)
Q Consensus 319 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (509)
+
T Consensus 229 -------------------------------------~------------------------------------------ 229 (278)
T cd06097 229 -------------------------------------Y------------------------------------------ 229 (278)
T ss_pred -------------------------------------c------------------------------------------
Confidence 0
Q ss_pred hhhhHHHHhhhhhccccCCCCCCCceEecCCCCCCCCcEEEEECCEEEEECcccceEeecccccceeeeeeeeccCCCCC
Q 010486 399 QKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPR 478 (509)
Q Consensus 399 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fgg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~ 478 (509)
....+.|.+||+.. +|+|+|+|
T Consensus 230 -------------------~~~~~~~~~~C~~~--~P~i~f~~------------------------------------- 251 (278)
T cd06097 230 -------------------DSEYGGWVFPCDTT--LPDLSFAV------------------------------------- 251 (278)
T ss_pred -------------------cCCCCEEEEECCCC--CCCEEEEE-------------------------------------
Confidence 12256799999963 99999999
Q ss_pred CCceEECHhhhcceEEEEeCCCCeEEEEe
Q 010486 479 GPLWILGDVFMGVYHTVFDSGKLRIGFAE 507 (509)
Q Consensus 479 ~~~~ilG~~fl~~~y~vfD~~~~rIGfa~ 507 (509)
.||||++|||++|+|||++++|||||+
T Consensus 252 --~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 --FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred --EEEEcchhhCceeEEEcCCCceeeecC
Confidence 499999999999999999999999996
No 14
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.8e-50 Score=419.18 Aligned_cols=316 Identities=28% Similarity=0.466 Sum_probs=246.6
Q ss_pred ceEEEEEEeCCCCceEEEEEeCCCCcEEEeCCCCCCCcccCCCcccCCCCCCCceecCcEEEEEcCCCcEEEEEEEEEEE
Q 010486 83 AQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQDNVE 162 (509)
Q Consensus 83 ~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs~~G~~~~D~v~ 162 (509)
..|+++|+||||||++.|+|||||+++||+|..|. ..++.|+|++|+||+..++.|+++|++|++.|.+++|+|+
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~-----~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~ 76 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHP-----FIHTYFHRELSSTYRDLGKGVTVPYTQGSWEGELGTDLVS 76 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCc-----cccccCCchhCcCcccCCceEEEEECcceEEEEEEEEEEE
Confidence 46999999999999999999999999999998773 3467899999999999999999999999999999999999
Q ss_pred EceEEecCeE----EEEEEEeCCccccccceeeEeecccccccc--CCCCchHHHHHHcCCCCCceEEEEecCCC-----
Q 010486 163 VGDVVVKDQV----FIEATREGSLTFLLARFDGIIGLGFREIAV--GDAVPVWDNMVEQGLVSEEVFSFWLNRDP----- 231 (509)
Q Consensus 163 ~gg~~~~~~~----fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~--~~~~~~~~~L~~qg~i~~~~FSl~l~~~~----- 231 (509)
||+. .++. |+++....+........|||||||++..+. ....|++++|++|+.+ .++||+||....
T Consensus 77 ig~~--~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~-~~~FS~~l~~~~~~~~~ 153 (364)
T cd05473 77 IPKG--PNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGI-PDVFSLQMCGAGLPVNG 153 (364)
T ss_pred ECCC--CccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCC-ccceEEEeccccccccc
Confidence 9863 2333 344433332112233679999999987764 2457899999999987 579999985321
Q ss_pred --CCCCCcEEEECCcCCCCcccceEEEecCCcCCcEEEEEEeeeEEECCeeeeeecC---CceEEEcCCCcCcccCHHHH
Q 010486 232 --DAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQVNKFELGDILIGNQSTGVCEG---GCAAIVDSGTSLLAGPTPVV 306 (509)
Q Consensus 232 --~~~~~G~L~fGgiD~~~~~g~l~~~pv~~~~~w~~~~v~l~~i~v~~~~~~~~~~---~~~~iiDTGTs~i~lp~~~~ 306 (509)
....+|.|+|||+|+++|.|++.|+|+.+..+|. |.+++|+|+++.+..... ...+||||||+++++|++++
T Consensus 154 ~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~~~~~---v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTs~~~lp~~~~ 230 (364)
T cd05473 154 SASGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYE---VIILKLEVGGQSLNLDCKEYNYDKAIVDSGTTNLRLPVKVF 230 (364)
T ss_pred ccccCCCcEEEeCCcCHhhcCCCceEEecCcceeEE---EEEEEEEECCEecccccccccCccEEEeCCCcceeCCHHHH
Confidence 1224799999999999999999999999889999 999999999987754321 24699999999999999999
Q ss_pred HHHHHHhCCCcceecceeehhhccchhhHHHHhhCCCCccccccccccccCCccceecceeeeeeccccccCCcccchhh
Q 010486 307 TEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSAC 386 (509)
Q Consensus 307 ~~i~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (509)
++|.++++++.. . +
T Consensus 231 ~~l~~~l~~~~~------------~------------~------------------------------------------ 244 (364)
T cd05473 231 NAAVDAIKAASL------------I------------E------------------------------------------ 244 (364)
T ss_pred HHHHHHHHhhcc------------c------------c------------------------------------------
Confidence 999999976510 0 0
Q ss_pred hhHHHHHHHHhhhhhhHHHHhhhhhccccCCCCC-CCceEecCCCCC-----CCCcEEEEECC------EEEEECcccce
Q 010486 387 EMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNP-MGESIIDCDRIP-----TMPNVSFTIGD------KIFNLSPEQYI 454 (509)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~-~~~~~~~C~~~~-----~~P~l~f~fgg------~~~~l~~~~yi 454 (509)
..+.. .+.+.++|.... .+|+|+|+|+| .++.|+|++|+
T Consensus 245 -----------------------------~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~l~p~~Y~ 295 (364)
T cd05473 245 -----------------------------DFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRITILPQLYL 295 (364)
T ss_pred -----------------------------cCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEEEECHHHhh
Confidence 00000 122356786533 58999999964 47899999999
Q ss_pred Eeecc-cccceeeeeeeeccCCCCCCCceEECHhhhcceEEEEeCCCCeEEEEecC
Q 010486 455 LKTGE-GIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 509 (509)
Q Consensus 455 ~~~~~-~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rIGfa~~~ 509 (509)
..... .....|+. +... ...+.||||+.|||++|+|||++++|||||++.
T Consensus 296 ~~~~~~~~~~~C~~-~~~~----~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~ 346 (364)
T cd05473 296 RPVEDHGTQLDCYK-FAIS----QSTNGTVIGAVIMEGFYVVFDRANKRVGFAVST 346 (364)
T ss_pred hhhccCCCcceeeE-Eeee----cCCCceEEeeeeEcceEEEEECCCCEEeeEecc
Confidence 86432 22357975 2111 123469999999999999999999999999874
No 15
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-50 Score=422.68 Aligned_cols=320 Identities=40% Similarity=0.757 Sum_probs=266.1
Q ss_pred eeEeceecCCceEEEEEEeCCCCceEEEEEeCCCCcEEEeCCCCCCCcccCC-Ccc-cCCCCCCCceecCcE--------
Q 010486 73 DILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYF-HSR-YKSRKSNTYTEIGKS-------- 142 (509)
Q Consensus 73 ~~~~l~n~~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~-~~~-f~~~~SsT~~~~~~~-------- 142 (509)
...++..+.+.+|+++|+||||||+|+|++||||+++||+|..|.. .|.. +.. |+|++|+||+..+|.
T Consensus 35 ~~~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~--~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~ 112 (398)
T KOG1339|consen 35 LPESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSS--ACYSQHNPIFDPSASSTYKSVGCSSPRCKSLP 112 (398)
T ss_pred cccccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccc--cccccCCCccCccccccccccCCCCccccccc
Confidence 3456667778899999999999999999999999999999999962 6875 555 999999999997743
Q ss_pred ----------EEEEcCCC-cEEEEEEEEEEEEce---EEecCeEEEEEEEeCCccccc-cceeeEeeccccccccCCCCc
Q 010486 143 ----------CEINYGSG-SISGFFSQDNVEVGD---VVVKDQVFIEATREGSLTFLL-ARFDGIIGLGFREIAVGDAVP 207 (509)
Q Consensus 143 ----------~~~~Yg~g-s~~G~~~~D~v~~gg---~~~~~~~fg~a~~~~~~~~~~-~~~dGIlGLg~~~~s~~~~~~ 207 (509)
|.+.|++| +++|++++|+|++++ ..++++.|||+....+. +.. .+++||||||+...+.....+
T Consensus 113 ~~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~~~q~~ 191 (398)
T KOG1339|consen 113 QSCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSVPSQLP 191 (398)
T ss_pred cCcccCCcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccc-cccccccceEeecCCCCccceeecc
Confidence 99999995 589999999999998 78888999999988765 444 678999999999988655444
Q ss_pred hHHHHHHcCCCCCceEEEEecCCCCC-CCCcEEEECCcCCCCcccceEEEecCCcC--CcEEEEEEeeeEEECCee----
Q 010486 208 VWDNMVEQGLVSEEVFSFWLNRDPDA-EEGGEIVFGGVDPKHFKGKHTYVPVTKKG--YWQVNKFELGDILIGNQS---- 280 (509)
Q Consensus 208 ~~~~L~~qg~i~~~~FSl~l~~~~~~-~~~G~L~fGgiD~~~~~g~l~~~pv~~~~--~w~~~~v~l~~i~v~~~~---- 280 (509)
.+.++ .++||+||.+.... ..+|.|+||++|+.++.++++|+|+..+. ||. |.+++|.|+++.
T Consensus 192 ~~~~~-------~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~---v~l~~I~vgg~~~~~~ 261 (398)
T KOG1339|consen 192 SFYNA-------INVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQ---VNLDGISVGGKRPIGS 261 (398)
T ss_pred cccCC-------ceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEE---EEEeEEEECCccCCCc
Confidence 33222 23899999987433 24899999999999999999999999887 999 999999999843
Q ss_pred eeeecCCceEEEcCCCcCcccCHHHHHHHHHHhCCCcceecceeehhhccchhhHHHHhhCCCCccccccccccccCCcc
Q 010486 281 TGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAE 360 (509)
Q Consensus 281 ~~~~~~~~~~iiDTGTs~i~lp~~~~~~i~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (509)
...+.++..+|+||||+++++|.++|++|.++++++.
T Consensus 262 ~~~~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~------------------------------------------- 298 (398)
T KOG1339|consen 262 SLFCTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEV------------------------------------------- 298 (398)
T ss_pred ceEecCCCCEEEECCcceeeccHHHHHHHHHHHHhhe-------------------------------------------
Confidence 2233446889999999999999999999999998750
Q ss_pred ceecceeeeeeccccccCCcccchhhhhHHHHHHHHhhhhhhHHHHhhhhhccccCCCCCCCceEecCCCCCC----CCc
Q 010486 361 YVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPT----MPN 436 (509)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~----~P~ 436 (509)
.. ....+.+.++|..... +|.
T Consensus 299 ---------------------------------------------------~~----~~~~~~~~~~C~~~~~~~~~~P~ 323 (398)
T KOG1339|consen 299 ---------------------------------------------------SV----VGTDGEYFVPCFSISTSGVKLPD 323 (398)
T ss_pred ---------------------------------------------------ec----cccCCceeeecccCCCCcccCCc
Confidence 00 1235567788887776 999
Q ss_pred EEEEEC-CEEEEECcccceEeecccccceeeeeeeeccCCCCCCCceEECHhhhcceEEEEeCC-CCeEEEEec
Q 010486 437 VSFTIG-DKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSG-KLRIGFAEA 508 (509)
Q Consensus 437 l~f~fg-g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~-~~rIGfa~~ 508 (509)
|+|+|+ |+.|.+++++|+++....... |.+.+...+.. +.||||+.|+|+++++||.. ++|||||++
T Consensus 324 i~~~f~~g~~~~l~~~~y~~~~~~~~~~-Cl~~~~~~~~~----~~~ilG~~~~~~~~~~~D~~~~~riGfa~~ 392 (398)
T KOG1339|consen 324 ITFHFGGGAVFSLPPKNYLVEVSDGGGV-CLAFFNGMDSG----PLWILGDVFQQNYLVVFDLGENSRVGFAPA 392 (398)
T ss_pred EEEEECCCcEEEeCccceEEEECCCCCc-eeeEEecCCCC----ceEEEchHHhCCEEEEEeCCCCCEEEeccc
Confidence 999998 899999999999987655222 99988765422 68999999999999999999 999999985
No 16
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.3e-49 Score=406.73 Aligned_cols=282 Identities=30% Similarity=0.465 Sum_probs=235.7
Q ss_pred ceEEEEEEeCCCCceEEEEEeCCCCcEEEeCCCCCCCcccCC--CcccCCCCCCCceec----------------CcEEE
Q 010486 83 AQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYF--HSRYKSRKSNTYTEI----------------GKSCE 144 (509)
Q Consensus 83 ~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~--~~~f~~~~SsT~~~~----------------~~~~~ 144 (509)
..|+++|+||||||+++|+|||||+++||+|..|. .|.. ++.|+|++|+|++.. .|.|.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~---~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~~~~~~~ 78 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCK---NCGIHMEPPYNLNNSITSSILYCDCNKCCYCLSCLNNKCEYS 78 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCC---CcCCCCCCCcCcccccccccccCCCccccccCcCCCCcCcEE
Confidence 47999999999999999999999999999999997 5653 478999999999863 57999
Q ss_pred EEcCCCc-EEEEEEEEEEEEceEEec-------CeEEEEEEEeCCccccccceeeEeeccccccccCCCCchHHHHHHcC
Q 010486 145 INYGSGS-ISGFFSQDNVEVGDVVVK-------DQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQG 216 (509)
Q Consensus 145 ~~Yg~gs-~~G~~~~D~v~~gg~~~~-------~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg 216 (509)
+.|++|+ +.|.+++|+|+||+..+. ++.|||+....+ .|.....+||||||+...+. ..+.+..|++++
T Consensus 79 i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~--~~~~~~~l~~~~ 155 (326)
T cd06096 79 ISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETN-LFLTQQATGILGLSLTKNNG--LPTPIILLFTKR 155 (326)
T ss_pred EEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccC-cccccccceEEEccCCcccc--cCchhHHHHHhc
Confidence 9999997 799999999999986653 467999987654 34456789999999986532 223455578887
Q ss_pred CCCC--ceEEEEecCCCCCCCCcEEEECCcCCCCcc----------cceEEEecCCcCCcEEEEEEeeeEEECCeee-ee
Q 010486 217 LVSE--EVFSFWLNRDPDAEEGGEIVFGGVDPKHFK----------GKHTYVPVTKKGYWQVNKFELGDILIGNQST-GV 283 (509)
Q Consensus 217 ~i~~--~~FSl~l~~~~~~~~~G~L~fGgiD~~~~~----------g~l~~~pv~~~~~w~~~~v~l~~i~v~~~~~-~~ 283 (509)
.+.. ++||+||.+. +|.|+|||+|++++. +++.|+|+....+|. |.+++|+++++.. ..
T Consensus 156 ~~~~~~~~FS~~l~~~-----~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~---v~l~~i~vg~~~~~~~ 227 (326)
T cd06096 156 PKLKKDKIFSICLSED-----GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYY---VKLEGLSVYGTTSNSG 227 (326)
T ss_pred ccccCCceEEEEEcCC-----CeEEEECccChhhhcccccccccccCCceEEeccCCceEE---EEEEEEEEccccccee
Confidence 7665 9999999864 799999999999987 889999999889999 9999999998861 12
Q ss_pred ecCCceEEEcCCCcCcccCHHHHHHHHHHhCCCcceecceeehhhccchhhHHHHhhCCCCccccccccccccCCcccee
Q 010486 284 CEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVS 363 (509)
Q Consensus 284 ~~~~~~~iiDTGTs~i~lp~~~~~~i~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (509)
......++|||||++++||++++++|.+
T Consensus 228 ~~~~~~aivDSGTs~~~lp~~~~~~l~~---------------------------------------------------- 255 (326)
T cd06096 228 NTKGLGMLVDSGSTLSHFPEDLYNKINN---------------------------------------------------- 255 (326)
T ss_pred cccCCCEEEeCCCCcccCCHHHHHHHHh----------------------------------------------------
Confidence 3457789999999999999999887643
Q ss_pred cceeeeeeccccccCCcccchhhhhHHHHHHHHhhhhhhHHHHhhhhhccccCCCCCCCceEecCCCCCCCCcEEEEEC-
Q 010486 364 TGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIG- 442 (509)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fg- 442 (509)
.+|+|+|.|+
T Consensus 256 ---------------------------------------------------------------------~~P~i~~~f~~ 266 (326)
T cd06096 256 ---------------------------------------------------------------------FFPTITIIFEN 266 (326)
T ss_pred ---------------------------------------------------------------------hcCcEEEEEcC
Confidence 1289999997
Q ss_pred CEEEEECcccceEeecccccceeeeeeeeccCCCCCCCceEECHhhhcceEEEEeCCCCeEEEEec
Q 010486 443 DKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 508 (509)
Q Consensus 443 g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rIGfa~~ 508 (509)
|++++++|++|+++.... .|..++... .+.||||++|||++|+|||++++|||||++
T Consensus 267 g~~~~i~p~~y~~~~~~~---~c~~~~~~~------~~~~ILG~~flr~~y~vFD~~~~riGfa~~ 323 (326)
T cd06096 267 NLKIDWKPSSYLYKKESF---WCKGGEKSV------SNKPILGASFFKNKQIIFDLDNNRIGFVES 323 (326)
T ss_pred CcEEEECHHHhccccCCc---eEEEEEecC------CCceEEChHHhcCcEEEEECcCCEEeeEcC
Confidence 899999999999875432 476665422 247999999999999999999999999986
No 17
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=3.9e-49 Score=416.15 Aligned_cols=307 Identities=23% Similarity=0.408 Sum_probs=236.5
Q ss_pred CCceEEEEEEeCCCCceEEEEEeCCCCcEEEeCCCCCCCcccC--CCcccCCCCCCCceecC------------------
Q 010486 81 MDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCY--FHSRYKSRKSNTYTEIG------------------ 140 (509)
Q Consensus 81 ~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~--~~~~f~~~~SsT~~~~~------------------ 140 (509)
.+.+|+++|+||||||++.|++||||+++||+|..|. .|. .++.|||++|+||+...
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~---~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~ 157 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCD---DCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDE 157 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCc---ccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCC
Confidence 4678999999999999999999999999999999997 676 45799999999999753
Q ss_pred --cEEEEEcCCCc-EEEEEEEEEEEEce-----EEecCeEEEEEEEeCCccccccceeeEeeccccccccCCCCchHHHH
Q 010486 141 --KSCEINYGSGS-ISGFFSQDNVEVGD-----VVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNM 212 (509)
Q Consensus 141 --~~~~~~Yg~gs-~~G~~~~D~v~~gg-----~~~~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L 212 (509)
|.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||+....+. |. ...+||||||+...+ ++.+|
T Consensus 158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~-f~-~~~~GilGLG~~~~S------l~sql 229 (431)
T PLN03146 158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGT-FD-EKGSGIVGLGGGPLS------LISQL 229 (431)
T ss_pred CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCC-cc-CCCceeEecCCCCcc------HHHHh
Confidence 79999999998 58999999999987 46889999999876542 32 257999999998665 45555
Q ss_pred HHcCCCCCceEEEEecCCC-CCCCCcEEEECCcCCCCccc-ceEEEecCC---cCCcEEEEEEeeeEEECCeeeeeec--
Q 010486 213 VEQGLVSEEVFSFWLNRDP-DAEEGGEIVFGGVDPKHFKG-KHTYVPVTK---KGYWQVNKFELGDILIGNQSTGVCE-- 285 (509)
Q Consensus 213 ~~qg~i~~~~FSl~l~~~~-~~~~~G~L~fGgiD~~~~~g-~l~~~pv~~---~~~w~~~~v~l~~i~v~~~~~~~~~-- 285 (509)
..+ +. ++||+||.+.. +....|.|+||+. .++.| .+.|+|+.. ..+|. |.+++|+||++.+.++.
T Consensus 230 ~~~--~~-~~FSycL~~~~~~~~~~g~l~fG~~--~~~~~~~~~~tPl~~~~~~~~y~---V~L~gIsVgg~~l~~~~~~ 301 (431)
T PLN03146 230 GSS--IG-GKFSYCLVPLSSDSNGTSKINFGTN--AIVSGSGVVSTPLVSKDPDTFYY---LTLEAISVGSKKLPYTGSS 301 (431)
T ss_pred hHh--hC-CcEEEECCCCCCCCCCcceEEeCCc--cccCCCCceEcccccCCCCCeEE---EeEEEEEECCEECcCCccc
Confidence 442 44 59999997532 2234799999984 45554 489999974 46899 99999999998876432
Q ss_pred ----CCceEEEcCCCcCcccCHHHHHHHHHHhCCCcceecceeehhhccchhhHHHHhhCCCCccccccccccccCCccc
Q 010486 286 ----GGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEY 361 (509)
Q Consensus 286 ----~~~~~iiDTGTs~i~lp~~~~~~i~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (509)
+...+||||||+++++|+++|++|.+++... +......
T Consensus 302 ~~~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~----------------------~~~~~~~---------------- 343 (431)
T PLN03146 302 KNGVEEGNIIIDSGTTLTLLPSDFYSELESAVEEA----------------------IGGERVS---------------- 343 (431)
T ss_pred cccCCCCcEEEeCCccceecCHHHHHHHHHHHHHH----------------------hccccCC----------------
Confidence 2347999999999999999999998887543 0000000
Q ss_pred eecceeeeeeccccccCCcccchhhhhHHHHHHHHhhhhhhHHHHhhhhhccccCCCCCCCceEecCCCCCCCCcEEEEE
Q 010486 362 VSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTI 441 (509)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~f 441 (509)
+ . ......|+... ....+|.|+|+|
T Consensus 344 ---------~---------------------------------~--~~~~~~C~~~~-----------~~~~~P~i~~~F 368 (431)
T PLN03146 344 ---------D---------------------------------P--QGLLSLCYSST-----------SDIKLPIITAHF 368 (431)
T ss_pred ---------C---------------------------------C--CCCCCccccCC-----------CCCCCCeEEEEE
Confidence 0 0 00001233211 013689999999
Q ss_pred CCEEEEECcccceEeecccccceeeeeeeeccCCCCCCCceEECHhhhcceEEEEeCCCCeEEEEec
Q 010486 442 GDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 508 (509)
Q Consensus 442 gg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rIGfa~~ 508 (509)
+|+++.|+|++|+++..++ ..|+. +... .+.||||+.|||++|++||++++|||||++
T Consensus 369 ~Ga~~~l~~~~~~~~~~~~--~~Cl~-~~~~------~~~~IlG~~~q~~~~vvyDl~~~~igFa~~ 426 (431)
T PLN03146 369 TGADVKLQPLNTFVKVSED--LVCFA-MIPT------SSIAIFGNLAQMNFLVGYDLESKTVSFKPT 426 (431)
T ss_pred CCCeeecCcceeEEEcCCC--cEEEE-EecC------CCceEECeeeEeeEEEEEECCCCEEeeecC
Confidence 9999999999999976543 57985 3321 236999999999999999999999999986
No 18
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=4.5e-49 Score=396.90 Aligned_cols=278 Identities=29% Similarity=0.519 Sum_probs=240.6
Q ss_pred eEEEEEEeCCCCceEEEEEeCCCCcEEEeCCCCCCCcccCCCcccCCCCCCCceecCcEEEEEcCCC-cEEEEEEEEEEE
Q 010486 84 QYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSG-SISGFFSQDNVE 162 (509)
Q Consensus 84 ~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~g-s~~G~~~~D~v~ 162 (509)
.|+++|+||||||+++|++||||+++||+ +|.+.|++| ++.|.+++|+|+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------~~~~~Y~~g~~~~G~~~~D~v~ 52 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------------DFSISYGDGTSASGTWGTDTVS 52 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-----------------------------eeEEEeccCCcEEEEEEEEEEE
Confidence 69999999999999999999999999996 688999995 589999999999
Q ss_pred EceEEecCeEEEEEEEeCCccccccceeeEeecccccccc-----CCCCchHHHHHHcCCCCCceEEEEecCCCCCCCCc
Q 010486 163 VGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAV-----GDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGG 237 (509)
Q Consensus 163 ~gg~~~~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~-----~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G 237 (509)
+++..++++.|||+... ...+||||||+...+. ....+++++|.+||+|++++||+||.+.. ...|
T Consensus 53 ~g~~~~~~~~fg~~~~~-------~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~--~~~g 123 (295)
T cd05474 53 IGGATVKNLQFAVANST-------SSDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNAYSLYLNDLD--ASTG 123 (295)
T ss_pred ECCeEecceEEEEEecC-------CCCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceEEEEEeCCCC--CCce
Confidence 99999999999999863 2458999999987643 24457999999999999999999998753 2379
Q ss_pred EEEECCcCCCCcccceEEEecCCc------CCcEEEEEEeeeEEECCeeee--eecCCceEEEcCCCcCcccCHHHHHHH
Q 010486 238 EIVFGGVDPKHFKGKHTYVPVTKK------GYWQVNKFELGDILIGNQSTG--VCEGGCAAIVDSGTSLLAGPTPVVTEI 309 (509)
Q Consensus 238 ~L~fGgiD~~~~~g~l~~~pv~~~------~~w~~~~v~l~~i~v~~~~~~--~~~~~~~~iiDTGTs~i~lp~~~~~~i 309 (509)
.|+|||+|+++|.|+++|+|+..+ .+|. |.+++|.+++.... .......++|||||+++++|.+++++|
T Consensus 124 ~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~---v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~~~~~l 200 (295)
T cd05474 124 SILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELS---VTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSDIVDAI 200 (295)
T ss_pred eEEEeeeccceeeceeEEEeCcCcCCCCCceEEE---EEEEEEEEEcCCCcccccCCCccEEECCCCccEeCCHHHHHHH
Confidence 999999999999999999999865 6899 99999999988753 234567899999999999999999999
Q ss_pred HHHhCCCcceecceeehhhccchhhHHHHhhCCCCccccccccccccCCccceecceeeeeeccccccCCcccchhhhhH
Q 010486 310 NHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMA 389 (509)
Q Consensus 310 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (509)
.+++++.. +
T Consensus 201 ~~~~~~~~---------------------------------------~-------------------------------- 209 (295)
T cd05474 201 AKQLGATY---------------------------------------D-------------------------------- 209 (295)
T ss_pred HHHhCCEE---------------------------------------c--------------------------------
Confidence 99997651 0
Q ss_pred HHHHHHHhhhhhhHHHHhhhhhccccCCCCCCCceEecCCCCCCCCcEEEEECCEEEEECcccceEeecc--cccceeee
Q 010486 390 VVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGE--GIAEVCIS 467 (509)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fgg~~~~l~~~~yi~~~~~--~~~~~C~~ 467 (509)
...+.|.++|+.... |+|+|+|+|++++|++++|+++... .....|++
T Consensus 210 -----------------------------~~~~~~~~~C~~~~~-p~i~f~f~g~~~~i~~~~~~~~~~~~~~~~~~C~~ 259 (295)
T cd05474 210 -----------------------------SDEGLYVVDCDAKDD-GSLTFNFGGATISVPLSDLVLPASTDDGGDGACYL 259 (295)
T ss_pred -----------------------------CCCcEEEEeCCCCCC-CEEEEEECCeEEEEEHHHhEeccccCCCCCCCeEE
Confidence 013568899998766 9999999999999999999997642 34578998
Q ss_pred eeeeccCCCCCCCceEECHhhhcceEEEEeCCCCeEEEEec
Q 010486 468 GFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 508 (509)
Q Consensus 468 ~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rIGfa~~ 508 (509)
+|+..+ . +.||||++|||++|++||.+++|||||+|
T Consensus 260 ~i~~~~----~-~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 260 GIQPST----S-DYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred EEEeCC----C-CcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 888653 1 57999999999999999999999999997
No 19
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=2.4e-48 Score=392.77 Aligned_cols=287 Identities=25% Similarity=0.441 Sum_probs=223.6
Q ss_pred eEEEEEEeCCCCceEEEEEeCCCCcEEEeCCCCCCCcccCCCcccCCCCCCCceecCcEEEEEcCCCc-EEEEEEEEEEE
Q 010486 84 QYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGS-ISGFFSQDNVE 162 (509)
Q Consensus 84 ~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs-~~G~~~~D~v~ 162 (509)
+|+++|+||||||++.|++||||+++||+|..| |.|.++|++|+ ++|.+++|+|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c------------------------~~~~i~Yg~Gs~~~G~~~~D~v~ 56 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC------------------------CLYQVSYGDGSYTTGDLATDTLT 56 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC------------------------CeeeeEeCCCceEEEEEEEEEEE
Confidence 599999999999999999999999999976543 68999999998 58999999999
Q ss_pred EceE-EecCeEEEEEEEeCCccccccceeeEeeccccccccCCCCchHHHHHHcCCCCCceEEEEecCCCCCCCCcEEEE
Q 010486 163 VGDV-VVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVF 241 (509)
Q Consensus 163 ~gg~-~~~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~f 241 (509)
|++. .++++.|||+...++. + ...+||||||+...+ +..++..+ .+++||+||.+.. ...+|+|+|
T Consensus 57 ig~~~~~~~~~Fg~~~~~~~~-~--~~~~GilGLg~~~~s------~~~ql~~~---~~~~FS~~L~~~~-~~~~G~l~f 123 (299)
T cd05472 57 LGSSDVVPGFAFGCGHDNEGL-F--GGAAGLLGLGRGKLS------LPSQTASS---YGGVFSYCLPDRS-SSSSGYLSF 123 (299)
T ss_pred eCCCCccCCEEEECCccCCCc-c--CCCCEEEECCCCcch------HHHHhhHh---hcCceEEEccCCC-CCCCceEEe
Confidence 9998 8999999999876542 2 267999999987654 34455544 3589999998743 233899999
Q ss_pred CCcCCCCcccceEEEecCCc----CCcEEEEEEeeeEEECCeeeeee---cCCceEEEcCCCcCcccCHHHHHHHHHHhC
Q 010486 242 GGVDPKHFKGKHTYVPVTKK----GYWQVNKFELGDILIGNQSTGVC---EGGCAAIVDSGTSLLAGPTPVVTEINHAIG 314 (509)
Q Consensus 242 GgiD~~~~~g~l~~~pv~~~----~~w~~~~v~l~~i~v~~~~~~~~---~~~~~~iiDTGTs~i~lp~~~~~~i~~~~~ 314 (509)
||+|++ .|++.|+|+.++ .+|. |++++|+|+++.+... ..+..++|||||+++++|++++++|.+++.
T Consensus 124 Gg~d~~--~g~l~~~pv~~~~~~~~~y~---v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~ 198 (299)
T cd05472 124 GAAASV--PAGASFTPMLSNPRVPTFYY---VGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAALRDAFR 198 (299)
T ss_pred CCcccc--CCCceECCCccCCCCCCeEE---EeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHHHHHHHHH
Confidence 999998 899999999763 6899 9999999999887542 245689999999999999999999999886
Q ss_pred CCcceecceeehhhccchhhHHHHhhCCCCccccccccccccCCccceecceeeeeeccccccCCcccchhhhhHHHHHH
Q 010486 315 GEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQ 394 (509)
Q Consensus 315 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (509)
++. ...... .+
T Consensus 199 ~~~----------------------~~~~~~-----~~------------------------------------------ 209 (299)
T cd05472 199 AAM----------------------AAYPRA-----PG------------------------------------------ 209 (299)
T ss_pred HHh----------------------ccCCCC-----CC------------------------------------------
Confidence 540 000000 00
Q ss_pred HHhhhhhhHHHHhhhhhccccCCCCCCCceEecCCCCCCCCcEEEEEC-CEEEEECcccceEeecccccceeeeeeeecc
Q 010486 395 NQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIG-DKIFNLSPEQYILKTGEGIAEVCISGFMAFD 473 (509)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fg-g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~ 473 (509)
.+.-+.|+. ++|.....+|+|+|+|+ +++++|+|++|+++.. .....|+ ++...+
T Consensus 210 -------------~~~~~~C~~---------~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~-~~~~~C~-~~~~~~ 265 (299)
T cd05472 210 -------------FSILDTCYD---------LSGFRSVSVPTVSLHFQGGADVELDASGVLYPVD-DSSQVCL-AFAGTS 265 (299)
T ss_pred -------------CCCCCccCc---------CCCCcCCccCCEEEEECCCCEEEeCcccEEEEec-CCCCEEE-EEeCCC
Confidence 000011222 23333457999999996 8999999999998432 2336897 454332
Q ss_pred CCCCCCCceEECHhhhcceEEEEeCCCCeEEEEec
Q 010486 474 LPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 508 (509)
Q Consensus 474 ~~~~~~~~~ilG~~fl~~~y~vfD~~~~rIGfa~~ 508 (509)
..++.||||+.|||++|+|||++++|||||++
T Consensus 266 ---~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~ 297 (299)
T cd05472 266 ---DDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPG 297 (299)
T ss_pred ---CCCCCEEEchHHccceEEEEECCCCEEeEecC
Confidence 13457999999999999999999999999986
No 20
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=7.3e-46 Score=369.99 Aligned_cols=279 Identities=49% Similarity=0.865 Sum_probs=242.9
Q ss_pred EEEEEEeCCCCceEEEEEeCCCCcEEEeCCCCCCCcccCCCcc--cCCCCCCCceecCcEEEEEcCCCcEEEEEEEEEEE
Q 010486 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSR--YKSRKSNTYTEIGKSCEINYGSGSISGFFSQDNVE 162 (509)
Q Consensus 85 Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~--f~~~~SsT~~~~~~~~~~~Yg~gs~~G~~~~D~v~ 162 (509)
|+++|.||+|+|++.|++||||+++||+|..|. ...|..... |++..|+++....+.+.+.|++|++.|.+++|+|+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~Y~~g~~~g~~~~D~v~ 79 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCT-SCSCQKHPRFKYDSSKSSTYKDTGCTFSITYGDGSVTGGLGTDTVT 79 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCC-ccccccCCCCccCccCCceeecCCCEEEEEECCCeEEEEEEEeEEE
Confidence 789999999999999999999999999999997 223333333 89999999999999999999999999999999999
Q ss_pred EceEEecCeEEEEEEEeCCccccccceeeEeeccccccccCCCCchHHHHHHcCCCCCceEEEEecCCCCCCCCcEEEEC
Q 010486 163 VGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFG 242 (509)
Q Consensus 163 ~gg~~~~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~fG 242 (509)
+++..++++.|||+..... .+.....+||||||+...+.....+++++|.+++.|.+++||+||.+.......|.|+||
T Consensus 80 ~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~G 158 (283)
T cd05471 80 IGGLTIPNQTFGCATSESG-DFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFG 158 (283)
T ss_pred ECCEEEeceEEEEEeccCC-cccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEc
Confidence 9999999999999998764 344567899999999987766678899999999999999999999985322348999999
Q ss_pred CcCCCCcccceEEEecCC--cCCcEEEEEEeeeEEECCeeeeeecCCceEEEcCCCcCcccCHHHHHHHHHHhCCCccee
Q 010486 243 GVDPKHFKGKHTYVPVTK--KGYWQVNKFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVS 320 (509)
Q Consensus 243 giD~~~~~g~l~~~pv~~--~~~w~~~~v~l~~i~v~~~~~~~~~~~~~~iiDTGTs~i~lp~~~~~~i~~~~~~~~~~~ 320 (509)
|+|++++.+++.|+|+.. ..+|. |.+++|.+++...........++|||||+++++|.+++++|++++.+...
T Consensus 159 g~d~~~~~~~~~~~p~~~~~~~~~~---v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~-- 233 (283)
T cd05471 159 GIDPSKYTGDLTYTPVVSNGPGYWQ---VPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVS-- 233 (283)
T ss_pred ccCccccCCceEEEecCCCCCCEEE---EEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCccc--
Confidence 999999999999999988 78999 99999999997422345678999999999999999999999999987610
Q ss_pred cceeehhhccchhhHHHHhhCCCCccccccccccccCCccceecceeeeeeccccccCCcccchhhhhHHHHHHHHhhhh
Q 010486 321 AECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQK 400 (509)
Q Consensus 321 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (509)
T Consensus 234 -------------------------------------------------------------------------------- 233 (283)
T cd05471 234 -------------------------------------------------------------------------------- 233 (283)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHhhhhhccccCCCCCCCceEecCCCCCCCCcEEEEECCEEEEECcccceEeecccccceeeeeeeeccCCCCCCC
Q 010486 401 QTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGP 480 (509)
Q Consensus 401 ~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fgg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~ 480 (509)
.....+..+|.....+|+|+|+|
T Consensus 234 ------------------~~~~~~~~~~~~~~~~p~i~f~f--------------------------------------- 256 (283)
T cd05471 234 ------------------SSDGGYGVDCSPCDTLPDITFTF--------------------------------------- 256 (283)
T ss_pred ------------------ccCCcEEEeCcccCcCCCEEEEE---------------------------------------
Confidence 01234667888888999999999
Q ss_pred ceEECHhhhcceEEEEeCCCCeEEEEe
Q 010486 481 LWILGDVFMGVYHTVFDSGKLRIGFAE 507 (509)
Q Consensus 481 ~~ilG~~fl~~~y~vfD~~~~rIGfa~ 507 (509)
.||||++|||++|++||++++|||||+
T Consensus 257 ~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 489999999999999999999999985
No 21
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=2.1e-45 Score=365.09 Aligned_cols=248 Identities=29% Similarity=0.534 Sum_probs=210.5
Q ss_pred eEEEEEEeCCCCceEEEEEeCCCCcEEEeCCCCCCCcccCCCcccCCCCCCCceecCcEEEEEcCCCc-EEEEEEEEEEE
Q 010486 84 QYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGS-ISGFFSQDNVE 162 (509)
Q Consensus 84 ~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs-~~G~~~~D~v~ 162 (509)
+|+++|+||||||++.|++||||+++||+| |.|.++|++|+ +.|.+++|+|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~---------------------------~~~~~~Y~dg~~~~G~~~~D~v~ 53 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC---------------------------CSYEYSYGDGSSTSGVLATETFT 53 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC---------------------------CceEeEeCCCceeeeeEEEEEEE
Confidence 599999999999999999999999999975 46889999775 79999999999
Q ss_pred EceE--EecCeEEEEEEEeCCccccccceeeEeeccccccccCCCCchHHHHHHcCCCCCceEEEEecCCCCCCCCcEEE
Q 010486 163 VGDV--VVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIV 240 (509)
Q Consensus 163 ~gg~--~~~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~ 240 (509)
|++. .++++.|||+...++ +.....+||||||+...+ ++.+|..++ ++||+||.+..+....|+|+
T Consensus 54 ~g~~~~~~~~~~Fg~~~~~~~--~~~~~~~GIlGLg~~~~s------~~~ql~~~~----~~Fs~~l~~~~~~~~~G~l~ 121 (265)
T cd05476 54 FGDSSVSVPNVAFGCGTDNEG--GSFGGADGILGLGRGPLS------LVSQLGSTG----NKFSYCLVPHDDTGGSSPLI 121 (265)
T ss_pred ecCCCCccCCEEEEecccccC--CccCCCCEEEECCCCccc------HHHHhhccc----CeeEEEccCCCCCCCCCeEE
Confidence 9998 899999999998765 446678999999987543 567787776 89999998753233589999
Q ss_pred ECCcCCCCcccceEEEecCC----cCCcEEEEEEeeeEEECCeeeee--------ecCCceEEEcCCCcCcccCHHHHHH
Q 010486 241 FGGVDPKHFKGKHTYVPVTK----KGYWQVNKFELGDILIGNQSTGV--------CEGGCAAIVDSGTSLLAGPTPVVTE 308 (509)
Q Consensus 241 fGgiD~~~~~g~l~~~pv~~----~~~w~~~~v~l~~i~v~~~~~~~--------~~~~~~~iiDTGTs~i~lp~~~~~~ 308 (509)
||++|++ +.|++.|+|+.. ..+|. |.+++|+|+++.+.+ ......++|||||+++++|+++
T Consensus 122 fGg~d~~-~~~~l~~~p~~~~~~~~~~~~---v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~~--- 194 (265)
T cd05476 122 LGDAADL-GGSGVVYTPLVKNPANPTYYY---VNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDPA--- 194 (265)
T ss_pred ECCcccc-cCCCceEeecccCCCCCCceE---eeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCccc---
Confidence 9999999 999999999976 47999 999999999987642 2456789999999999999731
Q ss_pred HHHHhCCCcceecceeehhhccchhhHHHHhhCCCCccccccccccccCCccceecceeeeeeccccccCCcccchhhhh
Q 010486 309 INHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEM 388 (509)
Q Consensus 309 i~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (509)
T Consensus 195 -------------------------------------------------------------------------------- 194 (265)
T cd05476 195 -------------------------------------------------------------------------------- 194 (265)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhhhhHHHHhhhhhccccCCCCCCCceEecCCCCCCCCcEEEEEC-CEEEEECcccceEeecccccceeee
Q 010486 389 AVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIG-DKIFNLSPEQYILKTGEGIAEVCIS 467 (509)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fg-g~~~~l~~~~yi~~~~~~~~~~C~~ 467 (509)
+|.|+|+|+ ++++.+++++|+++.. ....|+.
T Consensus 195 ---------------------------------------------~P~i~~~f~~~~~~~i~~~~y~~~~~--~~~~C~~ 227 (265)
T cd05476 195 ---------------------------------------------YPDLTLHFDGGADLELPPENYFVDVG--EGVVCLA 227 (265)
T ss_pred ---------------------------------------------cCCEEEEECCCCEEEeCcccEEEECC--CCCEEEE
Confidence 188999997 8999999999999643 3368975
Q ss_pred eeeeccCCCCCCCceEECHhhhcceEEEEeCCCCeEEEEecC
Q 010486 468 GFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 509 (509)
Q Consensus 468 ~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rIGfa~~~ 509 (509)
+... +..+.||||++|||++|++||++++|||||++.
T Consensus 228 -~~~~----~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~ 264 (265)
T cd05476 228 -ILSS----SSGGVSILGNIQQQNFLVEYDLENSRLGFAPAD 264 (265)
T ss_pred -EecC----CCCCcEEEChhhcccEEEEEECCCCEEeeecCC
Confidence 4322 245689999999999999999999999999873
No 22
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=2.7e-45 Score=365.80 Aligned_cols=258 Identities=24% Similarity=0.432 Sum_probs=213.6
Q ss_pred ceEEEEEEeCCCCceEEEEEeCCCCcEEEeCC-CCCCCcccCCCcccCCCCCCCceecCcEEEEEcCCC-cEEEEEEEEE
Q 010486 83 AQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSS-KCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSG-SISGFFSQDN 160 (509)
Q Consensus 83 ~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~-~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~g-s~~G~~~~D~ 160 (509)
++|+++|+||||||++.|++||||+++||+|. .|. .| .|.|.++|+++ ++.|.+++|+
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~---~c-----------------~c~~~i~Ygd~~~~~G~~~~D~ 60 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCT---GC-----------------QCDYEIEYADGGSSMGVLVTDI 60 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCC---CC-----------------cCccEeEeCCCCceEEEEEEEE
Confidence 36999999999999999999999999999984 575 45 46899999965 5899999999
Q ss_pred EEEce----EEecCeEEEEEEEeCCcc-ccccceeeEeeccccccccCCCCchHHHHHHcCCCCCceEEEEecCCCCCCC
Q 010486 161 VEVGD----VVVKDQVFIEATREGSLT-FLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEE 235 (509)
Q Consensus 161 v~~gg----~~~~~~~fg~a~~~~~~~-~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~ 235 (509)
|++++ ..++++.|||+....+.. +.....+||||||+... +++++|.+++.| +++||+||.+. .
T Consensus 61 v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~------s~~~ql~~~~~i-~~~Fs~~l~~~----~ 129 (273)
T cd05475 61 FSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKI------SLPSQLASQGII-KNVIGHCLSSN----G 129 (273)
T ss_pred EEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCC------CHHHHHHhcCCc-CceEEEEccCC----C
Confidence 99963 577899999997655422 23456899999998754 478999999999 89999999863 2
Q ss_pred CcEEEECCcCCCCcccceEEEecCCc---CCcEEEEEEeeeEEECCeeeeeecCCceEEEcCCCcCcccCHHHHHHHHHH
Q 010486 236 GGEIVFGGVDPKHFKGKHTYVPVTKK---GYWQVNKFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHA 312 (509)
Q Consensus 236 ~G~L~fGgiD~~~~~g~l~~~pv~~~---~~w~~~~v~l~~i~v~~~~~~~~~~~~~~iiDTGTs~i~lp~~~~~~i~~~ 312 (509)
+|.|+|| |..++.|++.|+|+.++ .+|. |++.+|+|+++.. ...+..++|||||+++++|+++|
T Consensus 130 ~g~l~~G--~~~~~~g~i~ytpl~~~~~~~~y~---v~l~~i~vg~~~~--~~~~~~~ivDTGTt~t~lp~~~y------ 196 (273)
T cd05475 130 GGFLFFG--DDLVPSSGVTWTPMRRESQKKHYS---PGPASLLFNGQPT--GGKGLEVVFDSGSSYTYFNAQAY------ 196 (273)
T ss_pred CeEEEEC--CCCCCCCCeeecccccCCCCCeEE---EeEeEEEECCEEC--cCCCceEEEECCCceEEcCCccc------
Confidence 6899998 55677899999999875 7999 9999999999854 34567899999999999997421
Q ss_pred hCCCcceecceeehhhccchhhHHHHhhCCCCccccccccccccCCccceecceeeeeeccccccCCcccchhhhhHHHH
Q 010486 313 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVW 392 (509)
Q Consensus 313 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (509)
T Consensus 197 -------------------------------------------------------------------------------- 196 (273)
T cd05475 197 -------------------------------------------------------------------------------- 196 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhhhhHHHHhhhhhccccCCCCCCCceEecCCCCCCCCcEEEEECC----EEEEECcccceEeecccccceeeee
Q 010486 393 VQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGD----KIFNLSPEQYILKTGEGIAEVCISG 468 (509)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fgg----~~~~l~~~~yi~~~~~~~~~~C~~~ 468 (509)
+|+|+|.|++ ++++|+|++|+++... ...|+..
T Consensus 197 -----------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~--~~~Cl~~ 233 (273)
T cd05475 197 -----------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEK--GNVCLGI 233 (273)
T ss_pred -----------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCC--CCEEEEE
Confidence 5889999976 7999999999987443 2579877
Q ss_pred eeeccCCCCCCCceEECHhhhcceEEEEeCCCCeEEEEecC
Q 010486 469 FMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 509 (509)
Q Consensus 469 ~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rIGfa~~~ 509 (509)
+...+. ..++.||||+.|||++|++||++++|||||++.
T Consensus 234 ~~~~~~--~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~ 272 (273)
T cd05475 234 LNGSEI--GLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSD 272 (273)
T ss_pred ecCCCc--CCCceEEECceEEEeeEEEEECcCCEeCcccCC
Confidence 654321 224579999999999999999999999999874
No 23
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=2.7e-41 Score=349.06 Aligned_cols=314 Identities=17% Similarity=0.235 Sum_probs=231.2
Q ss_pred eCCCCce-EEEEEeCCCCcEEEeCCCCCC---------CcccCCCcccCCCC------CCCceecCcEEEEE-cCCCc-E
Q 010486 91 IGSPPQN-FSVIFDTGSSNLWVPSSKCYF---------SISCYFHSRYKSRK------SNTYTEIGKSCEIN-YGSGS-I 152 (509)
Q Consensus 91 IGtPpQ~-~~v~lDTGSs~~WV~~~~C~~---------~~~C~~~~~f~~~~------SsT~~~~~~~~~~~-Yg~gs-~ 152 (509)
+|||-.+ +.|++||||+++||+|..|.. +..|..+..|++.. ++......|.|... |++|+ .
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~~gs~t 81 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAGHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPVTGECA 81 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCCCcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCcCeeEccccccCcEe
Confidence 5788777 999999999999997764431 56777676676542 22333345777654 77885 6
Q ss_pred EEEEEEEEEEEce--------EEecCeEEEEEEEeCCccccccceeeEeeccccccccCCCCchHHHHHHcCCCCCceEE
Q 010486 153 SGFFSQDNVEVGD--------VVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFS 224 (509)
Q Consensus 153 ~G~~~~D~v~~gg--------~~~~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS 224 (509)
.|++++|+|+|+. ..++++.|||+.......+ ....|||||||+.+.+ +..+|..++. .+++||
T Consensus 82 ~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~-~~~~dGIlGLg~~~lS------l~sql~~~~~-~~~~FS 153 (362)
T cd05489 82 TGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGL-PPGAQGVAGLGRSPLS------LPAQLASAFG-VARKFA 153 (362)
T ss_pred eEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCC-ccccccccccCCCccc------hHHHhhhhcC-CCcceE
Confidence 9999999999963 3788999999976432222 3347999999999876 3456666654 568999
Q ss_pred EEecCCCCCCCCcEEEECCcCCCCcc------cceEEEecCCc----CCcEEEEEEeeeEEECCeeeeee--------cC
Q 010486 225 FWLNRDPDAEEGGEIVFGGVDPKHFK------GKHTYVPVTKK----GYWQVNKFELGDILIGNQSTGVC--------EG 286 (509)
Q Consensus 225 l~l~~~~~~~~~G~L~fGgiD~~~~~------g~l~~~pv~~~----~~w~~~~v~l~~i~v~~~~~~~~--------~~ 286 (509)
+||.+.. ..+|.|+||+.++.++. ++++|+|+..+ .||. |++++|+||++.+.++ .+
T Consensus 154 ~CL~~~~--~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~---v~l~~IsVg~~~l~~~~~~~~~~~~~ 228 (362)
T cd05489 154 LCLPSSP--GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYY---IGVTSIAVNGHAVPLNPTLSANDRLG 228 (362)
T ss_pred EEeCCCC--CCCeeEEECCCchhcccccccccCCccccccccCCCCCCceE---EEEEEEEECCEECCCCchhccccccC
Confidence 9998753 23899999999988775 78999999764 7999 9999999999877542 23
Q ss_pred CceEEEcCCCcCcccCHHHHHHHHHHhCCCcceecceeehhhccchhhHHHHhhCCCCccccccccccccCCccceecce
Q 010486 287 GCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGI 366 (509)
Q Consensus 287 ~~~~iiDTGTs~i~lp~~~~~~i~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (509)
...+||||||++++||+++|++|.+++.++- ..+.. ..+
T Consensus 229 ~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~----------~~~~~---------~~~---------------------- 267 (362)
T cd05489 229 PGGVKLSTVVPYTVLRSDIYRAFTQAFAKAT----------ARIPR---------VPA---------------------- 267 (362)
T ss_pred CCcEEEecCCceEEECHHHHHHHHHHHHHHh----------cccCc---------CCC----------------------
Confidence 4679999999999999999999999886430 00000 000
Q ss_pred eeeeeccccccCCcccchhhhhHHHHHHHHhhhhhhHHHHhhhhhccccCCCCCCCceEecCCCCCCCCcEEEEECC--E
Q 010486 367 KTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGD--K 444 (509)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fgg--~ 444 (509)
.....++|+.... ...|+....+|+|+|+|+| +
T Consensus 268 ----------------------------------------~~~~~~~C~~~~~-----~~~~~~~~~~P~it~~f~g~g~ 302 (362)
T cd05489 268 ----------------------------------------AAVFPELCYPASA-----LGNTRLGYAVPAIDLVLDGGGV 302 (362)
T ss_pred ----------------------------------------CCCCcCccccCCC-----cCCcccccccceEEEEEeCCCe
Confidence 0000135554321 2234445689999999964 9
Q ss_pred EEEECcccceEeecccccceeeeeeeeccCCCCCCCceEECHhhhcceEEEEeCCCCeEEEEec
Q 010486 445 IFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 508 (509)
Q Consensus 445 ~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rIGfa~~ 508 (509)
+++|+|++|+++..++ ..|+ +|...+.. .++.||||+.|||++|++||++++|||||++
T Consensus 303 ~~~l~~~ny~~~~~~~--~~Cl-~f~~~~~~--~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 303 NWTIFGANSMVQVKGG--VACL-AFVDGGSE--PRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred EEEEcCCceEEEcCCC--cEEE-EEeeCCCC--CCceEEEeeheecceEEEEECCCCEeecccC
Confidence 9999999999986543 6896 67654421 2458999999999999999999999999975
No 24
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.88 E-value=3e-22 Score=171.63 Aligned_cols=108 Identities=55% Similarity=0.882 Sum_probs=96.0
Q ss_pred EEEEeCCCCceEEEEEeCCCCcEEEeCCCCCCCcccCCCccc-CCCCCCCceecCcEEEEEcCCCcEEEEEEEEEEEEce
Q 010486 87 GEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRY-KSRKSNTYTEIGKSCEINYGSGSISGFFSQDNVEVGD 165 (509)
Q Consensus 87 ~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f-~~~~SsT~~~~~~~~~~~Yg~gs~~G~~~~D~v~~gg 165 (509)
++|.||||||++.|+|||||+++||+|+.|. ...|..++.| +++.|++++...+.|.+.|++|++.|.+++|+|+|++
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~-~~~~~~~~~~~~~~~sst~~~~~~~~~~~Y~~g~~~g~~~~D~v~ig~ 79 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ-SLAIYSHSSYDDPSASSTYSDNGCTFSITYGTGSLSGGLSTDTVSIGD 79 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC-CcccccccccCCcCCCCCCCCCCcEEEEEeCCCeEEEEEEEEEEEECC
Confidence 4799999999999999999999999999986 3344455666 9999999999999999999999999999999999999
Q ss_pred EEecCeEEEEEEEeCCccccccceeeEeec
Q 010486 166 VVVKDQVFIEATREGSLTFLLARFDGIIGL 195 (509)
Q Consensus 166 ~~~~~~~fg~a~~~~~~~~~~~~~dGIlGL 195 (509)
..++++.|||+....+..+.....+|||||
T Consensus 80 ~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 80 IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEECCEEEEEEEecCCccccccccccccCC
Confidence 999999999999887654555678999998
No 25
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.85 E-value=1.6e-20 Score=172.97 Aligned_cols=136 Identities=34% Similarity=0.591 Sum_probs=106.0
Q ss_pred EEEEEEeCCCCceEEEEEeCCCCcEEEeCCCCCCCcccCCCcccCCCCCCCceecC----------------------cE
Q 010486 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIG----------------------KS 142 (509)
Q Consensus 85 Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~----------------------~~ 142 (509)
|+++|.||||+|++.+++||||+.+|++| ..+.|+|.+|+||+... |.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~ 70 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCP 70 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC----------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCccc
Confidence 89999999999999999999999999987 24678888888888732 59
Q ss_pred EEEEcCCCc-EEEEEEEEEEEEce-----EEecCeEEEEEEEeCCccccccceeeEeeccccccccCCCCchHHHHHHcC
Q 010486 143 CEINYGSGS-ISGFFSQDNVEVGD-----VVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQG 216 (509)
Q Consensus 143 ~~~~Yg~gs-~~G~~~~D~v~~gg-----~~~~~~~fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg 216 (509)
|.+.|++++ +.|.+++|+++++. ..+.++.|||+....+. ....+||||||+.+.+ ++.||.++
T Consensus 71 y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~---~~~~~GilGLg~~~~S------l~sQl~~~- 140 (164)
T PF14543_consen 71 YSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGL---FYGADGILGLGRGPLS------LPSQLASS- 140 (164)
T ss_dssp EEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTS---STTEEEEEE-SSSTTS------HHHHHHHH-
T ss_pred ceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccC---CcCCCcccccCCCccc------HHHHHHHh-
Confidence 999999987 69999999999986 46788999999877653 2378999999988766 77888887
Q ss_pred CCCCceEEEEecCCCCCCCCcEEEECC
Q 010486 217 LVSEEVFSFWLNRDPDAEEGGEIVFGG 243 (509)
Q Consensus 217 ~i~~~~FSl~l~~~~~~~~~G~L~fGg 243 (509)
..++||+||.+ ......|.|+||+
T Consensus 141 --~~~~FSyCL~~-~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 141 --SGNKFSYCLPS-SSPSSSGFLSFGD 164 (164)
T ss_dssp ----SEEEEEB-S--SSSSEEEEEECS
T ss_pred --cCCeEEEECCC-CCCCCCEEEEeCc
Confidence 66899999998 2233489999995
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.77 E-value=5.7e-18 Score=155.66 Aligned_cols=150 Identities=23% Similarity=0.376 Sum_probs=101.6
Q ss_pred EEeeeEEECCeeeeeecC-------CceEEEcCCCcCcccCHHHHHHHHHHhCCCcceecceeehhhccchhhHHHHhhC
Q 010486 269 FELGDILIGNQSTGVCEG-------GCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSG 341 (509)
Q Consensus 269 v~l~~i~v~~~~~~~~~~-------~~~~iiDTGTs~i~lp~~~~~~i~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~ 341 (509)
|++.+|+|+++.+.++.. ...++|||||++++||+++|+++.+++.++ +..
T Consensus 4 v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~----------------------~~~ 61 (161)
T PF14541_consen 4 VNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQ----------------------MGA 61 (161)
T ss_dssp EEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHH----------------------HHT
T ss_pred EEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHH----------------------hhh
Confidence 999999999999886544 468999999999999999999999999653 000
Q ss_pred CCCccccccccccccCCccceecceeeeeeccccccCCcccchhhhhHHHHHHHHhhhhhhHHHHhhhhhccccCCCCCC
Q 010486 342 LLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPM 421 (509)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ 421 (509)
.. .+++.-...-.++|++.+...
T Consensus 62 ~~---------------------------------------------------------~~~~~~~~~~~~~Cy~~~~~~ 84 (161)
T PF14541_consen 62 PG---------------------------------------------------------VSREAPPFSGFDLCYNLSSFG 84 (161)
T ss_dssp CT-----------------------------------------------------------CEE---TT-S-EEEGGCS-
T ss_pred cc---------------------------------------------------------cccccccCCCCCceeeccccc
Confidence 00 000000011234677665411
Q ss_pred CceEecCCCCCCCCcEEEEEC-CEEEEECcccceEeecccccceeeeeeeeccCCCCCCCceEECHhhhcceEEEEeCCC
Q 010486 422 GESIIDCDRIPTMPNVSFTIG-DKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGK 500 (509)
Q Consensus 422 ~~~~~~C~~~~~~P~l~f~fg-g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~ 500 (509)
.+ .....+|+|+|+|. |++++|++++|+++..++ ..|+.... .+ .......|||+.+|++++++||+++
T Consensus 85 ----~~-~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~--~~Cla~~~-~~--~~~~~~~viG~~~~~~~~v~fDl~~ 154 (161)
T PF14541_consen 85 ----VN-RDWAKFPTITLHFEGGADLTLPPENYFVQVSPG--VFCLAFVP-SD--ADDDGVSVIGNFQQQNYHVVFDLEN 154 (161)
T ss_dssp ----EE-TTEESS--EEEEETTSEEEEE-HHHHEEEECTT--EEEESEEE-ET--STTSSSEEE-HHHCCTEEEEEETTT
T ss_pred ----cc-cccccCCeEEEEEeCCcceeeeccceeeeccCC--CEEEEEEc-cC--CCCCCcEEECHHHhcCcEEEEECCC
Confidence 00 12247999999995 899999999999987643 78996443 31 2344689999999999999999999
Q ss_pred CeEEEEe
Q 010486 501 LRIGFAE 507 (509)
Q Consensus 501 ~rIGfa~ 507 (509)
+||||+|
T Consensus 155 ~~igF~~ 161 (161)
T PF14541_consen 155 GRIGFAP 161 (161)
T ss_dssp TEEEEEE
T ss_pred CEEEEeC
Confidence 9999997
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.01 E-value=1.6e-05 Score=65.60 Aligned_cols=92 Identities=15% Similarity=0.357 Sum_probs=65.3
Q ss_pred eEEEEEEeCCCCceEEEEEeCCCCcEEEeCCCCCCCcccCCCcccCCCCCCCceecCcEEEEEcCCCcE-EEEEEEEEEE
Q 010486 84 QYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSI-SGFFSQDNVE 162 (509)
Q Consensus 84 ~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs~-~G~~~~D~v~ 162 (509)
.|++++.|+. +++++++|||++.+|+...... .+.. . ........+...+|.. ......+.++
T Consensus 2 ~~~v~v~i~~--~~~~~llDTGa~~s~i~~~~~~---~l~~-----~------~~~~~~~~~~~~~G~~~~~~~~~~~i~ 65 (96)
T cd05483 2 HFVVPVTING--QPVRFLLDTGASTTVISEELAE---RLGL-----P------LTLGGKVTVQTANGRVRAARVRLDSLQ 65 (96)
T ss_pred cEEEEEEECC--EEEEEEEECCCCcEEcCHHHHH---HcCC-----C------ccCCCcEEEEecCCCccceEEEcceEE
Confidence 5899999995 9999999999999999765321 1110 0 1122345566677763 4555688999
Q ss_pred EceEEecCeEEEEEEEeCCccccccceeeEeeccc
Q 010486 163 VGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGF 197 (509)
Q Consensus 163 ~gg~~~~~~~fg~a~~~~~~~~~~~~~dGIlGLg~ 197 (509)
+|+..+.++.+..+..... ..+||||+.+
T Consensus 66 ig~~~~~~~~~~v~d~~~~------~~~gIlG~d~ 94 (96)
T cd05483 66 IGGITLRNVPAVVLPGDAL------GVDGLLGMDF 94 (96)
T ss_pred ECCcEEeccEEEEeCCccc------CCceEeChHH
Confidence 9999999998877754221 5699999864
No 28
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=97.38 E-value=0.00012 Score=50.30 Aligned_cols=38 Identities=26% Similarity=0.628 Sum_probs=35.7
Q ss_pred ccchhhhhHHHHHHHHhhhhhhHHHHhhhhhccccCCC
Q 010486 381 AVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLP 418 (509)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 418 (509)
..|..|++++.++++.|..+.|+++|..++++.|..+|
T Consensus 2 ~~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~lP 39 (39)
T PF05184_consen 2 DECDICKFVVKEIEKLLKNNKTEEEIKKALEKACNKLP 39 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHHTTSC
T ss_pred CcchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhhCc
Confidence 57999999999999999999999999999999998764
No 29
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.27 E-value=0.0017 Score=56.59 Aligned_cols=101 Identities=18% Similarity=0.354 Sum_probs=67.8
Q ss_pred EeceecCCceEEEEEEeCCCCceEEEEEeCCCCcEEEeCCCCCCCcccCCCcccCCCCCCCceecCcEEEEEcCCCcE-E
Q 010486 75 LPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSI-S 153 (509)
Q Consensus 75 ~~l~n~~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs~-~ 153 (509)
+++.-..++.|++++.|.. +++.+++|||++.+-+....-. .. ..++.. ......+.-..|.. .
T Consensus 2 ~~i~~~~~g~~~v~~~InG--~~~~flVDTGAs~t~is~~~A~---~L----gl~~~~------~~~~~~~~ta~G~~~~ 66 (121)
T TIGR02281 2 VQLAKDGDGHFYATGRVNG--RNVRFLVDTGATSVALNEEDAQ---RL----GLDLNR------LGYTVTVSTANGQIKA 66 (121)
T ss_pred EEEEEcCCCeEEEEEEECC--EEEEEEEECCCCcEEcCHHHHH---Hc----CCCccc------CCceEEEEeCCCcEEE
Confidence 4566667889999999987 7999999999999988653211 00 011111 12233444455664 4
Q ss_pred EEEEEEEEEEceEEecCeEEEEEEEeCCccccccceeeEeeccc
Q 010486 154 GFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGF 197 (509)
Q Consensus 154 G~~~~D~v~~gg~~~~~~~fg~a~~~~~~~~~~~~~dGIlGLg~ 197 (509)
..+.-|.+++|+..+.|..+.++.... ..+|+||+.+
T Consensus 67 ~~~~l~~l~iG~~~~~nv~~~v~~~~~-------~~~~LLGm~f 103 (121)
T TIGR02281 67 ARVTLDRVAIGGIVVNDVDAMVAEGGA-------LSESLLGMSF 103 (121)
T ss_pred EEEEeCEEEECCEEEeCcEEEEeCCCc-------CCceEcCHHH
Confidence 456889999999999999977663211 1279999975
No 30
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.74 E-value=0.0095 Score=48.18 Aligned_cols=88 Identities=20% Similarity=0.295 Sum_probs=54.8
Q ss_pred EEEEeCCCCceEEEEEeCCCCcEEEeCCCCCCCcccCCCcccCCCCCCCceecCcEEEEEcCCCcE-EEEEEEEEEEEce
Q 010486 87 GEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSI-SGFFSQDNVEVGD 165 (509)
Q Consensus 87 ~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs~-~G~~~~D~v~~gg 165 (509)
+++.|+. +++++++|||++.+.+....+. .. ...+. .......+.-.+|.. ......+.+++|+
T Consensus 1 V~v~vng--~~~~~liDTGa~~~~i~~~~~~---~l----~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~i~ig~ 65 (90)
T PF13650_consen 1 VPVKVNG--KPVRFLIDTGASISVISRSLAK---KL----GLKPR------PKSVPISVSGAGGSVTVYRGRVDSITIGG 65 (90)
T ss_pred CEEEECC--EEEEEEEcCCCCcEEECHHHHH---Hc----CCCCc------CCceeEEEEeCCCCEEEEEEEEEEEEECC
Confidence 3677876 8999999999999888654332 00 01110 011123333344443 4556666899999
Q ss_pred EEecCeEEEEEEEeCCccccccceeeEeecc
Q 010486 166 VVVKDQVFIEATREGSLTFLLARFDGIIGLG 196 (509)
Q Consensus 166 ~~~~~~~fg~a~~~~~~~~~~~~~dGIlGLg 196 (509)
..+.+..|-+.. .....+||||+-
T Consensus 66 ~~~~~~~~~v~~-------~~~~~~~iLG~d 89 (90)
T PF13650_consen 66 ITLKNVPFLVVD-------LGDPIDGILGMD 89 (90)
T ss_pred EEEEeEEEEEEC-------CCCCCEEEeCCc
Confidence 998888876664 134568999974
No 31
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=95.40 E-value=0.091 Score=53.64 Aligned_cols=196 Identities=18% Similarity=0.179 Sum_probs=104.7
Q ss_pred EEEEEeCCC----CceE-EEEEeCCCCcEEEeCCCCCCCcccCCCcccCCCCCCCceecCcEE--EEEcCCCcEEEEEEE
Q 010486 86 FGEIGIGSP----PQNF-SVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSC--EINYGSGSISGFFSQ 158 (509)
Q Consensus 86 ~~~i~IGtP----pQ~~-~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~--~~~Yg~gs~~G~~~~ 158 (509)
++.|+|=-| =|++ +|++||||.-+=+..+.-.. ..........+ .+.+. -..|++|..=|-+.+
T Consensus 25 ~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~sAl~~----~l~~~Lp~~t~-----~g~~laEC~~F~sgytWGsVr~ 95 (370)
T PF11925_consen 25 TVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFASALPS----SLAGSLPQQTG-----GGAPLAECAQFASGYTWGSVRT 95 (370)
T ss_pred eeEEEEeCCCCCCceeeCcEEEeccchhhhHHHhhhch----hhhccCCcccC-----CCcchhhhhhccCcccccceEE
Confidence 455555333 2555 59999999987765542210 00001111111 11111 135777777799999
Q ss_pred EEEEEceEEecCeEEEEEEEeC-----------C---ccccccceeeEeecccccccc----------------CCC-Cc
Q 010486 159 DNVEVGDVVVKDQVFIEATREG-----------S---LTFLLARFDGIIGLGFREIAV----------------GDA-VP 207 (509)
Q Consensus 159 D~v~~gg~~~~~~~fg~a~~~~-----------~---~~~~~~~~dGIlGLg~~~~s~----------------~~~-~~ 207 (509)
.+|+|++....+..+.++.+.. + ..-.....+||||+|...... ... .-
T Consensus 96 AdV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~~DcG~~C~~sa~~~~YY~C~~~~sC 175 (370)
T PF11925_consen 96 ADVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFPYDCGAACAQSALPGNYYSCPSGGSC 175 (370)
T ss_pred EEEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCccccCchhhcccCCCceEECCCCCCe
Confidence 9999999766666665553320 0 112245679999999764332 011 00
Q ss_pred hHHHHHHcCCCCCceEEEEecCCC------------CCCCCcEEEECCcCCCC--cccceEEEecCCcCCcEEEEEEeee
Q 010486 208 VWDNMVEQGLVSEEVFSFWLNRDP------------DAEEGGEIVFGGVDPKH--FKGKHTYVPVTKKGYWQVNKFELGD 273 (509)
Q Consensus 208 ~~~~L~~qg~i~~~~FSl~l~~~~------------~~~~~G~L~fGgiD~~~--~~g~l~~~pv~~~~~w~~~~v~l~~ 273 (509)
.-..+-...++..|+..|-.+.+. .....|.|+||=--++. ..+..+..+..+.++.. -
T Consensus 176 t~t~v~~~~QV~NPV~~Fa~DNNGvii~lP~v~~~Ga~SatG~LiFGIgTQsNN~l~~~~~~~~~~~~G~~t---t---- 248 (370)
T PF11925_consen 176 TSTTVPLAQQVANPVARFATDNNGVIIQLPAVSASGAASATGTLIFGIGTQSNNALPSGATVLTTDSNGDFT---T---- 248 (370)
T ss_pred ecccchhhhcccCcccccCccCCeEEEecCCCCCCCCccceEEEEEecCCcccCcccccceEEeecCCceEE---E----
Confidence 001111222366677666443321 12347999998322221 12225555666666655 2
Q ss_pred EEECCeeeeeecCCceEEEcCCCcCcccCHH
Q 010486 274 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTP 304 (509)
Q Consensus 274 i~v~~~~~~~~~~~~~~iiDTGTs~i~lp~~ 304 (509)
..+|.... ...||||+.-.++|+.
T Consensus 249 -~~~G~t~~------~sf~DSGSNg~fF~d~ 272 (370)
T PF11925_consen 249 -TFNGQTYS------ASFFDSGSNGYFFPDS 272 (370)
T ss_pred -EecCceee------eeeEecCCceeeccCC
Confidence 33444332 3499999999999964
No 32
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.40 E-value=0.094 Score=45.79 Aligned_cols=92 Identities=18% Similarity=0.261 Sum_probs=59.4
Q ss_pred CCceEEEEEEeCCCCceEEEEEeCCCCcEEEeCCCCCCCcccCCCcccCCCCCCCceecCcEEE-EEcCCCc--EEEEEE
Q 010486 81 MDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE-INYGSGS--ISGFFS 157 (509)
Q Consensus 81 ~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~-~~Yg~gs--~~G~~~ 157 (509)
....+++++.|+. +++.+++|||++..++....+. .+.-. .... ..+. ...+.|. ..|...
T Consensus 13 ~~~~~~v~~~Ing--~~~~~LvDTGAs~s~Is~~~a~---~lgl~----~~~~-------~~~~~~~~g~g~~~~~g~~~ 76 (124)
T cd05479 13 KVPMLYINVEING--VPVKAFVDSGAQMTIMSKACAE---KCGLM----RLID-------KRFQGIAKGVGTQKILGRIH 76 (124)
T ss_pred eeeEEEEEEEECC--EEEEEEEeCCCceEEeCHHHHH---HcCCc----cccC-------cceEEEEecCCCcEEEeEEE
Confidence 4567899999997 8899999999999999654432 12111 0011 1122 1233232 467777
Q ss_pred EEEEEEceEEecCeEEEEEEEeCCccccccceeeEeeccc
Q 010486 158 QDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGF 197 (509)
Q Consensus 158 ~D~v~~gg~~~~~~~fg~a~~~~~~~~~~~~~dGIlGLg~ 197 (509)
.+.+.+++...+ ..|.+.. ....|+|||+-+
T Consensus 77 ~~~l~i~~~~~~-~~~~Vl~--------~~~~d~ILG~d~ 107 (124)
T cd05479 77 LAQVKIGNLFLP-CSFTVLE--------DDDVDFLIGLDM 107 (124)
T ss_pred EEEEEECCEEee-eEEEEEC--------CCCcCEEecHHH
Confidence 889999998765 6665552 225689999964
No 33
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=94.37 E-value=0.5 Score=44.45 Aligned_cols=105 Identities=13% Similarity=0.239 Sum_probs=74.2
Q ss_pred CceeEeceecCCceEEEEEEeCCCCceEEEEEeCCCCcEEEeCCCCCCCcccCCCcccCCCCCCCceecCcEEEEEcCCC
Q 010486 71 DEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSG 150 (509)
Q Consensus 71 ~~~~~~l~n~~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~g 150 (509)
+...+.|....++-|.++..|-. |++++++|||-+.+.+...... .--++.+. .+.++.+.-.+|
T Consensus 92 g~~~v~Lak~~~GHF~a~~~VNG--k~v~fLVDTGATsVal~~~dA~-------RlGid~~~------l~y~~~v~TANG 156 (215)
T COG3577 92 GYQEVSLAKSRDGHFEANGRVNG--KKVDFLVDTGATSVALNEEDAR-------RLGIDLNS------LDYTITVSTANG 156 (215)
T ss_pred CceEEEEEecCCCcEEEEEEECC--EEEEEEEecCcceeecCHHHHH-------HhCCCccc------cCCceEEEccCC
Confidence 44578888888999999999988 9999999999999988765421 11244322 234566666788
Q ss_pred cE-EEEEEEEEEEEceEEecCeEEEEEEEeCCccccccceeeEeeccc
Q 010486 151 SI-SGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGF 197 (509)
Q Consensus 151 s~-~G~~~~D~v~~gg~~~~~~~fg~a~~~~~~~~~~~~~dGIlGLg~ 197 (509)
.. ...+-.|.|.||++...|..=-++.... ...-+|||.+
T Consensus 157 ~~~AA~V~Ld~v~IG~I~~~nV~A~V~~~g~-------L~~sLLGMSf 197 (215)
T COG3577 157 RARAAPVTLDRVQIGGIRVKNVDAMVAEDGA-------LDESLLGMSF 197 (215)
T ss_pred ccccceEEeeeEEEccEEEcCchhheecCCc-------cchhhhhHHH
Confidence 76 4557889999999998888744442211 1234778765
No 34
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=94.15 E-value=0.19 Score=41.09 Aligned_cols=75 Identities=11% Similarity=0.042 Sum_probs=48.0
Q ss_pred EEEEEEeCCCCceEEEEEeCCCCcEEEeCCCCCCCcccCCCcccCCCCCCCceecCcEEEEEcCCCc---EEEEEEEEEE
Q 010486 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGS---ISGFFSQDNV 161 (509)
Q Consensus 85 Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs---~~G~~~~D~v 161 (509)
|++++.|+. +++.+++||||+..++....+. ....+. .......+.-.+|. ..|.. .+.+
T Consensus 1 ~~~~~~Ing--~~i~~lvDTGA~~svis~~~~~--------~lg~~~------~~~~~~~v~~a~G~~~~~~G~~-~~~v 63 (91)
T cd05484 1 KTVTLLVNG--KPLKFQLDTGSAITVISEKTWR--------KLGSPP------LKPTKKRLRTATGTKLSVLGQI-LVTV 63 (91)
T ss_pred CEEEEEECC--EEEEEEEcCCcceEEeCHHHHH--------HhCCCc------cccccEEEEecCCCEeeEeEEE-EEEE
Confidence 578999998 9999999999999999765432 111110 11123334434444 36776 8899
Q ss_pred EEceEEecCeEEEEEE
Q 010486 162 EVGDVVVKDQVFIEAT 177 (509)
Q Consensus 162 ~~gg~~~~~~~fg~a~ 177 (509)
++++.+. ...|-+..
T Consensus 64 ~~~~~~~-~~~~~v~~ 78 (91)
T cd05484 64 KYGGKTK-VLTLYVVK 78 (91)
T ss_pred EECCEEE-EEEEEEEE
Confidence 9998773 45555444
No 35
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=93.45 E-value=0.02 Score=38.19 Aligned_cols=33 Identities=52% Similarity=0.963 Sum_probs=31.3
Q ss_pred ceeehhhccchhhHHHHhhCCCCcccccccccc
Q 010486 322 ECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLC 354 (509)
Q Consensus 322 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (509)
.|+..+++|++.+++.+.....|+.+|...|+|
T Consensus 3 ~C~~~V~~y~~~ii~~l~~~~~p~~iC~~i~~C 35 (35)
T PF03489_consen 3 ECKNFVDQYGPQIIQLLEKQLDPQQICTKIGLC 35 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHhcCChHHHHHHcCCC
Confidence 488999999999999999999999999999988
No 36
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=92.99 E-value=0.072 Score=50.95 Aligned_cols=89 Identities=35% Similarity=0.560 Sum_probs=70.4
Q ss_pred cceeehhhccchhhHHHHhhCCCCccccccccccccCCccceecceeeeeeccccccCCcccchhhhhHHHHHHHHhhh-
Q 010486 321 AECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQ- 399 (509)
Q Consensus 321 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 399 (509)
+.|+..+++|.+.+++.+.++..|+.+|...++|-- ++++.+ + ...+..-+..|.+|.+.+..+...|+.
T Consensus 77 ~~C~~fv~~y~~~ii~~l~~~~~P~~vC~~l~lC~~------~~~~~~--~-~~~~~~~~~~C~~C~~~V~~~~~~l~d~ 147 (218)
T KOG1340|consen 77 FECLSFVDSYLDPIIKELESGTAPEDVCKKLNLCSA------SAGPVS--E-VFASQPAAGECELCRETVTEADTKLQDK 147 (218)
T ss_pred HHHHHHHHHhhhHHHHHHHhccCHHHHHHHhccCCc------ccchhh--h-hhhhcccccccHHHHHHHHHHHHhcccc
Confidence 379999999999999999999999999999999953 111211 1 112333389999999999999999999
Q ss_pred hhhHHHHhhhhhccccCCC
Q 010486 400 KQTKEKVLSYINELCDSLP 418 (509)
Q Consensus 400 ~~~~~~~~~~~~~~c~~~~ 418 (509)
..++.++..-...-|..++
T Consensus 148 ~~~k~~~~~~~~~~ck~l~ 166 (218)
T KOG1340|consen 148 PKTKGKIVSLLLKSCKSLP 166 (218)
T ss_pred hhHHHHHHHHHHhhccCCc
Confidence 7788888877777786554
No 37
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=92.30 E-value=0.8 Score=39.90 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=22.1
Q ss_pred ceEECHhhhcceEEEEeCCCCeEE
Q 010486 481 LWILGDVFMGVYHTVFDSGKLRIG 504 (509)
Q Consensus 481 ~~ilG~~fl~~~y~vfD~~~~rIG 504 (509)
..|||..||+.+-.+.|+.+++|-
T Consensus 100 d~ILG~d~L~~~~~~ID~~~~~i~ 123 (124)
T cd05479 100 DFLIGLDMLKRHQCVIDLKENVLR 123 (124)
T ss_pred CEEecHHHHHhCCeEEECCCCEEE
Confidence 579999999999999999999874
No 38
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=92.13 E-value=0.62 Score=41.36 Aligned_cols=27 Identities=22% Similarity=0.221 Sum_probs=24.9
Q ss_pred ceEECHhhhcceEEEEeCCCCeEEEEe
Q 010486 481 LWILGDVFMGVYHTVFDSGKLRIGFAE 507 (509)
Q Consensus 481 ~~ilG~~fl~~~y~vfD~~~~rIGfa~ 507 (509)
..|||.++|+.+...-|+.+++|-|-.
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeC
Confidence 579999999999999999999999864
No 39
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=91.47 E-value=4.8 Score=34.87 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=24.4
Q ss_pred eEEECCeeeeeecCCceEEEcCCCcCcccCHHHHHHH
Q 010486 273 DILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 309 (509)
Q Consensus 273 ~i~v~~~~~~~~~~~~~~iiDTGTs~i~lp~~~~~~i 309 (509)
.+.|+|++. ..+||||++.+.++.+..+++
T Consensus 15 ~~~InG~~~-------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 15 TGRVNGRNV-------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred EEEECCEEE-------EEEEECCCCcEEcCHHHHHHc
Confidence 356788754 689999999999999977664
No 40
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=89.91 E-value=1.8 Score=35.05 Aligned_cols=81 Identities=19% Similarity=0.177 Sum_probs=47.3
Q ss_pred EEEeCCCCceEEEEEeCCCCcEEEeCCCCCCCcccCCCcccCCCCCCCceecCcEEEEEcCCCcEEEEE-EEE-EEEEce
Q 010486 88 EIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFF-SQD-NVEVGD 165 (509)
Q Consensus 88 ~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs~~G~~-~~D-~v~~gg 165 (509)
.+.|.. +++++++|||++.+-+....+. . . ....+...+.=..|...-.+ ..+ .+.+|+
T Consensus 2 ~v~InG--~~~~fLvDTGA~~tii~~~~a~---~-----~---------~~~~~~~~v~gagG~~~~~v~~~~~~v~vg~ 62 (86)
T cd06095 2 TITVEG--VPIVFLVDTGATHSVLKSDLGP---K-----Q---------ELSTTSVLIRGVSGQSQQPVTTYRTLVDLGG 62 (86)
T ss_pred EEEECC--EEEEEEEECCCCeEEECHHHhh---h-----c---------cCCCCcEEEEeCCCcccccEEEeeeEEEECC
Confidence 456665 8999999999999999766543 0 0 01122333333334321111 123 699999
Q ss_pred EEecCeEEEEEEEeCCccccccceeeEeeccc
Q 010486 166 VVVKDQVFIEATREGSLTFLLARFDGIIGLGF 197 (509)
Q Consensus 166 ~~~~~~~fg~a~~~~~~~~~~~~~dGIlGLg~ 197 (509)
....+ .|.+... . .++|||+.+
T Consensus 63 ~~~~~-~~~v~~~--~-------~~~lLG~df 84 (86)
T cd06095 63 HTVSH-SFLVVPN--C-------PDPLLGRDL 84 (86)
T ss_pred EEEEE-EEEEEcC--C-------CCcEechhh
Confidence 88875 4444321 1 378999864
No 41
>PF07966 A1_Propeptide: A1 Propeptide ; InterPro: IPR012848 Most eukaryotic endopeptidases (MEROPS peptidase family A1) are synthesised with signal and propeptides. The animal pepsin-like endopeptidase propeptides form a distinct family of propeptides, which contain a conserved motif approximately 30 residues long. In pepsinogen A, the first 11 residues of the mature pepsin sequence are displaced by residues of the propeptide. The propeptide contains two helices that block the active site cleft, in particular the conserved Asp11 residue, in pepsin, hydrogen bonds to a conserved Arg residue in the propeptide. This hydrogen bond stabilises the propeptide conformation and is probably responsible for triggering the conversion of pepsinogen to pepsin under acidic conditions [, ]. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1AVF_Q 1HTR_P 3PSG_A 2PSG_A 3VCM_Q 1TZS_P.
Probab=88.10 E-value=0.57 Score=29.88 Aligned_cols=27 Identities=26% Similarity=0.101 Sum_probs=19.7
Q ss_pred eEEEeeEeecCchhhhHHhhhhhHhhh
Q 010486 28 LRRIGLKKRRLDLHSLNAARITRKERY 54 (509)
Q Consensus 28 ~~rvpL~~~~~~~~~~~~~~~~~~~~~ 54 (509)
++||||+|.++.+..+.+.+...++++
T Consensus 1 l~rIPL~K~kS~R~~L~e~g~~~~flk 27 (29)
T PF07966_consen 1 LVRIPLKKFKSMRETLREKGTLEEFLK 27 (29)
T ss_dssp -EEEEEEE---HHHHHHHTT-HHHHHC
T ss_pred CEEEeccCCchHHHHHHHcCchHHHHH
Confidence 479999999999999999998888764
No 42
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=87.11 E-value=0.52 Score=36.38 Aligned_cols=37 Identities=32% Similarity=0.697 Sum_probs=35.4
Q ss_pred cchhhhhHHHHHHHHhhhhhhHHHHhhhhhccccCCC
Q 010486 382 VCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLP 418 (509)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 418 (509)
.|..|++.+..+++.+..+.+++.+..++.++|...+
T Consensus 2 ~C~~C~~~v~~~~~~~~~~~~~~~i~~~~~~~C~~~~ 38 (76)
T smart00741 2 LCELCEDVVKQLENLLKDNKTEEEIKKALEKVCKKLP 38 (76)
T ss_pred cChHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcC
Confidence 5999999999999999999999999999999999886
No 43
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=82.34 E-value=6.8 Score=33.17 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=20.5
Q ss_pred CceEECHhhhcceEEEEeCCCCeE
Q 010486 480 PLWILGDVFMGVYHTVFDSGKLRI 503 (509)
Q Consensus 480 ~~~ilG~~fl~~~y~vfD~~~~rI 503 (509)
+..+||..||+++-.+.|+.+.++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 357999999999999999987653
No 44
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=81.71 E-value=2.4 Score=33.10 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=30.0
Q ss_pred CCceEEEEEEeCCCCceEEEEEeCCCCcEEEeCCCC
Q 010486 81 MDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC 116 (509)
Q Consensus 81 ~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C 116 (509)
....+++++.||. +.+..++|||++...|+.+.+
T Consensus 5 ~~g~~~v~~~I~g--~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 5 DPGLMYVPVSIGG--VQVKALVDTGATHNFISESLA 38 (72)
T ss_pred cCCEEEEEEEECC--EEEEEEEeCCCcceecCHHHH
Confidence 4678999999999 999999999999999976654
No 45
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=80.46 E-value=7.8 Score=35.37 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=22.1
Q ss_pred CceEEEcCCCcCcccCHHHHHHHHHHh
Q 010486 287 GCAAIVDSGTSLLAGPTPVVTEINHAI 313 (509)
Q Consensus 287 ~~~~iiDTGTs~i~lp~~~~~~i~~~~ 313 (509)
...+++|||++..++..+..+.|.-..
T Consensus 45 ~i~vLfDSGSPTSfIr~di~~kL~L~~ 71 (177)
T PF12384_consen 45 PIKVLFDSGSPTSFIRSDIVEKLELPT 71 (177)
T ss_pred EEEEEEeCCCccceeehhhHHhhCCcc
Confidence 447999999999999999888774444
No 46
>PF13650 Asp_protease_2: Aspartyl protease
Probab=75.96 E-value=3.6 Score=32.74 Aligned_cols=29 Identities=10% Similarity=0.327 Sum_probs=23.7
Q ss_pred EEECCeeeeeecCCceEEEcCCCcCcccCHHHHHHH
Q 010486 274 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 309 (509)
Q Consensus 274 i~v~~~~~~~~~~~~~~iiDTGTs~i~lp~~~~~~i 309 (509)
+.|+|+++ .++||||++.+.++.+.++++
T Consensus 3 v~vng~~~-------~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV-------RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE-------EEEEcCCCCcEEECHHHHHHc
Confidence 56677644 689999999999999888765
No 47
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=75.22 E-value=3.9 Score=33.67 Aligned_cols=29 Identities=14% Similarity=0.326 Sum_probs=24.1
Q ss_pred EEEEEeCCCCceEEEEEeCCCCcEEEeCCCC
Q 010486 86 FGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC 116 (509)
Q Consensus 86 ~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C 116 (509)
+.+|.|.. +++.+++||||+.+-++...+
T Consensus 7 ~i~v~i~g--~~i~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 7 YITVKING--KKIKALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEEEETT--EEEEEEEETTBSSEEESSGGS
T ss_pred eEEEeECC--EEEEEEEecCCCcceeccccc
Confidence 46777877 899999999999999976544
No 48
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=68.85 E-value=8.4 Score=29.97 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=24.9
Q ss_pred eEEECCeeeeeecCCceEEEcCCCcCcccCHHHHHHH
Q 010486 273 DILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 309 (509)
Q Consensus 273 ~i~v~~~~~~~~~~~~~~iiDTGTs~i~lp~~~~~~i 309 (509)
.+.|++..+ .+++|||++-.+++.+.++.+
T Consensus 12 ~~~I~g~~~-------~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 12 PVSIGGVQV-------KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEECCEEE-------EEEEeCCCcceecCHHHHHHh
Confidence 456777655 589999999999999988876
No 49
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=65.37 E-value=8.8 Score=31.10 Aligned_cols=30 Identities=10% Similarity=0.245 Sum_probs=25.1
Q ss_pred eEEECCeeeeeecCCceEEEcCCCcCcccCHHHHHHH
Q 010486 273 DILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 309 (509)
Q Consensus 273 ~i~v~~~~~~~~~~~~~~iiDTGTs~i~lp~~~~~~i 309 (509)
.+.|+|+.+ ...||||++.+.++.+.+..+
T Consensus 4 ~~~Ing~~i-------~~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPL-------KFQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEE-------EEEEcCCcceEEeCHHHHHHh
Confidence 467888876 579999999999999988765
No 50
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=63.19 E-value=12 Score=29.91 Aligned_cols=30 Identities=17% Similarity=0.269 Sum_probs=23.9
Q ss_pred eEEECCeeeeeecCCceEEEcCCCcCcccCHHHHHHH
Q 010486 273 DILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 309 (509)
Q Consensus 273 ~i~v~~~~~~~~~~~~~~iiDTGTs~i~lp~~~~~~i 309 (509)
.+.++++.+ .++||||++.+.++.+..+.+
T Consensus 6 ~v~i~~~~~-------~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPV-------RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEE-------EEEEECCCCcEEcCHHHHHHc
Confidence 456776654 689999999999999877655
No 51
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=62.20 E-value=50 Score=29.16 Aligned_cols=31 Identities=29% Similarity=0.373 Sum_probs=26.0
Q ss_pred CceEEEEEEeCCCCceEEEEEeCCCCcEEEeCC
Q 010486 82 DAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSS 114 (509)
Q Consensus 82 ~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~ 114 (509)
...-.+.+.|.+ ++..+++|+|++..+|..+
T Consensus 19 ~~vi~g~~~I~~--~~~~vLiDSGAThsFIs~~ 49 (135)
T PF08284_consen 19 PDVITGTFLINS--IPASVLIDSGATHSFISSS 49 (135)
T ss_pred CCeEEEEEEecc--EEEEEEEecCCCcEEccHH
Confidence 345678888988 9999999999999999654
No 52
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=61.27 E-value=13 Score=32.52 Aligned_cols=79 Identities=16% Similarity=0.255 Sum_probs=44.9
Q ss_pred CceEEEEEEeCCCCceEEEEEeCCCCcEEEeCCCCCCCcccCCCcccCCCCCCCceecCcEEEEEcCCCc--EEEEEEEE
Q 010486 82 DAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGS--ISGFFSQD 159 (509)
Q Consensus 82 ~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs--~~G~~~~D 159 (509)
....|++++|+. +++++.+|||...+-+..+-+ ..|+....-+.. + -...+|-|+ +.|.+..-
T Consensus 22 v~mLyI~~~ing--~~vkA~VDtGAQ~tims~~~a---~r~gL~~lid~r----~------~g~a~GvG~~~i~G~Ih~~ 86 (124)
T PF09668_consen 22 VSMLYINCKING--VPVKAFVDTGAQSTIMSKSCA---ERCGLMRLIDKR----F------AGVAKGVGTQKILGRIHSV 86 (124)
T ss_dssp ----EEEEEETT--EEEEEEEETT-SS-EEEHHHH---HHTTGGGGEEGG----G-------EE-------EEEEEEEEE
T ss_pred cceEEEEEEECC--EEEEEEEeCCCCccccCHHHH---HHcCChhhcccc----c------cccccCCCcCceeEEEEEE
Confidence 346899999998 999999999999998865433 255533222211 0 012344454 68988888
Q ss_pred EEEEceEEecCeEEEEE
Q 010486 160 NVEVGDVVVKDQVFIEA 176 (509)
Q Consensus 160 ~v~~gg~~~~~~~fg~a 176 (509)
.+.+|+..++ ..|-+.
T Consensus 87 ~l~ig~~~~~-~s~~Vl 102 (124)
T PF09668_consen 87 QLKIGGLFFP-CSFTVL 102 (124)
T ss_dssp EEEETTEEEE-EEEEEE
T ss_pred EEEECCEEEE-EEEEEe
Confidence 8999886554 444433
No 53
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=60.09 E-value=13 Score=30.31 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=22.2
Q ss_pred EEEeCCCCceEEEEEeCCCCcEEEeCCCC
Q 010486 88 EIGIGSPPQNFSVIFDTGSSNLWVPSSKC 116 (509)
Q Consensus 88 ~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C 116 (509)
.+.|+. |.+.+++|||++++-+.....
T Consensus 2 ~~~i~g--~~~~~llDTGAd~Tvi~~~~~ 28 (87)
T cd05482 2 TLYING--KLFEGLLDTGADVSIIAENDW 28 (87)
T ss_pred EEEECC--EEEEEEEccCCCCeEEccccc
Confidence 456775 999999999999999976544
No 54
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=59.44 E-value=11 Score=30.36 Aligned_cols=29 Identities=14% Similarity=0.145 Sum_probs=24.2
Q ss_pred EEECCeeeeeecCCceEEEcCCCcCcccCHHHHHHH
Q 010486 274 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 309 (509)
Q Consensus 274 i~v~~~~~~~~~~~~~~iiDTGTs~i~lp~~~~~~i 309 (509)
+.|||+.+ ..++|||.+.+.++++.++.+
T Consensus 3 v~InG~~~-------~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPI-------VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEE-------EEEEECCCCeEEECHHHhhhc
Confidence 56777765 579999999999999988775
No 55
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=58.72 E-value=18 Score=34.30 Aligned_cols=51 Identities=31% Similarity=0.501 Sum_probs=33.6
Q ss_pred CCCcEEEEECCEEEEECcccceEeecccccceeeeeeeeccCCCCCCCceEECHhhhcceEEEEeCCCCeEEEE
Q 010486 433 TMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFA 506 (509)
Q Consensus 433 ~~P~l~f~fgg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rIGfa 506 (509)
..+.+.+.+++..|.+|- +.+. +.+-..|||.+|+|.|+=...+. .+|-|-
T Consensus 66 ~~~~~~i~I~~~~F~IP~---iYq~-------------------~~g~d~IlG~NF~r~y~Pfiq~~-~~I~f~ 116 (201)
T PF02160_consen 66 KAKNGKIQIADKIFRIPT---IYQQ-------------------ESGIDIILGNNFLRLYEPFIQTE-DRIQFH 116 (201)
T ss_pred EecCceEEEccEEEeccE---EEEe-------------------cCCCCEEecchHHHhcCCcEEEc-cEEEEE
Confidence 346778888888887742 2211 12346899999999887666664 456653
No 56
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=56.26 E-value=8.4 Score=31.99 Aligned_cols=24 Identities=13% Similarity=-0.053 Sum_probs=12.1
Q ss_pred CcchhhHHHHHHHHHHHHhhhhhc
Q 010486 1 MEQKLLRSVFCLWVLASCLLLPAS 24 (509)
Q Consensus 1 m~~~~~~~~l~ll~l~~~~~~a~~ 24 (509)
|..+..++|.++|++++.+++.++
T Consensus 1 MaSK~~llL~l~LA~lLlisSeva 24 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVA 24 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhh
Confidence 776665555444444444433333
No 57
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=45.16 E-value=7.4 Score=29.71 Aligned_cols=35 Identities=57% Similarity=1.011 Sum_probs=31.4
Q ss_pred ecceeehhhccchhhHHHHhhCCCCcccccccccc
Q 010486 320 SAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLC 354 (509)
Q Consensus 320 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (509)
...|+..+..|.+.+.+.+.....|+.+|...+.|
T Consensus 42 ~~~C~~~v~~~~~~ii~~i~~~~~p~~iC~~l~~C 76 (76)
T smart00741 42 SDQCKEFVDQYGPEIIDLLEQGLDPKDVCQKLGLC 76 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCC
Confidence 44599999999999999999999999999998887
No 58
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=41.80 E-value=25 Score=28.77 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=21.5
Q ss_pred eEEECCeeeeeecCCceEEEcCCCcCcccCHHHH
Q 010486 273 DILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVV 306 (509)
Q Consensus 273 ~i~v~~~~~~~~~~~~~~iiDTGTs~i~lp~~~~ 306 (509)
.+.++++.+ .++||||+..+.++.+.+
T Consensus 9 ~v~i~g~~i-------~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 9 TVKINGKKI-------KALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEETTEEE-------EEEEETTBSSEEESSGGS
T ss_pred EEeECCEEE-------EEEEecCCCcceeccccc
Confidence 366777765 689999999999998643
No 59
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=36.31 E-value=44 Score=30.66 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=21.9
Q ss_pred EEEEEeCCCCceEEEEEeCCCCcEEEeCC
Q 010486 86 FGEIGIGSPPQNFSVIFDTGSSNLWVPSS 114 (509)
Q Consensus 86 ~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~ 114 (509)
...+.++.-..+++++|||||+..++...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 34444555458999999999999988764
No 60
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=35.52 E-value=67 Score=30.57 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=25.7
Q ss_pred eEEECCeeeeeecCCceEEEcCCCcCcccCHHHHHHH
Q 010486 273 DILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 309 (509)
Q Consensus 273 ~i~v~~~~~~~~~~~~~~iiDTGTs~i~lp~~~~~~i 309 (509)
...|||+.+ ..++|||.|.+.++.+..+.+
T Consensus 109 ~~~VNGk~v-------~fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 109 NGRVNGKKV-------DFLVDTGATSVALNEEDARRL 138 (215)
T ss_pred EEEECCEEE-------EEEEecCcceeecCHHHHHHh
Confidence 567888877 479999999999999988766
No 61
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=34.19 E-value=43 Score=27.48 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=19.6
Q ss_pred ceEEEcCCCcCcccCHHHHHHHH
Q 010486 288 CAAIVDSGTSLLAGPTPVVTEIN 310 (509)
Q Consensus 288 ~~~iiDTGTs~i~lp~~~~~~i~ 310 (509)
....+|||++...+|...+..+.
T Consensus 11 v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 11 VKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEEecCCEEEeccHHHHhhhc
Confidence 36899999999999998877664
No 62
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=32.71 E-value=52 Score=28.76 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=23.3
Q ss_pred eEEECCeeeeeecCCceEEEcCCCcCcccCHHHHHHH
Q 010486 273 DILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 309 (509)
Q Consensus 273 ~i~v~~~~~~~~~~~~~~iiDTGTs~i~lp~~~~~~i 309 (509)
.++++|+.+ .|+||||+..+.++...++++
T Consensus 28 ~~~ing~~v-------kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPV-------KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEE-------EEEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEE-------EEEEeCCCCccccCHHHHHHc
Confidence 467888876 599999999999999987764
No 63
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=29.79 E-value=18 Score=34.70 Aligned_cols=43 Identities=33% Similarity=0.613 Sum_probs=37.9
Q ss_pred hCCCcceecceeehhhccchhhHHHHhhCCCCccccccccccc
Q 010486 313 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCA 355 (509)
Q Consensus 313 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (509)
...-..+...|+..+..|.+.++.++.....|..+|.+.+.|.
T Consensus 162 ck~l~~~~~~Ck~fV~~y~p~~i~~l~~~~~p~~vC~~l~~C~ 204 (218)
T KOG1340|consen 162 CKSLPNYEQKCKQFVHEYGPQLITLLEEGLDPHDVCTALGACP 204 (218)
T ss_pred ccCCccchhHHHHHHHHhccHHHHHHHHhhCchhHHHHhhcCC
Confidence 3444556677999999999999999999999999999999996
No 64
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=29.52 E-value=33 Score=29.86 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=18.6
Q ss_pred eEEEcCCCc-CcccCHHHHHHHH
Q 010486 289 AAIVDSGTS-LLAGPTPVVTEIN 310 (509)
Q Consensus 289 ~~iiDTGTs-~i~lp~~~~~~i~ 310 (509)
..+||||.+ ++.+|.++++++.
T Consensus 28 ~~LiDTGFtg~lvlp~~vaek~~ 50 (125)
T COG5550 28 DELIDTGFTGYLVLPPQVAEKLG 50 (125)
T ss_pred eeEEecCCceeEEeCHHHHHhcC
Confidence 348999999 9999999887763
No 65
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=29.42 E-value=2.1e+02 Score=23.50 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=18.4
Q ss_pred ceEEEEEeCCCCcEEEeCCCCC
Q 010486 96 QNFSVIFDTGSSNLWVPSSKCY 117 (509)
Q Consensus 96 Q~~~v~lDTGSs~~WV~~~~C~ 117 (509)
-...+++|||+...-+|.+.|.
T Consensus 8 s~~~fLVDTGA~vSviP~~~~~ 29 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASSTK 29 (89)
T ss_pred CCcEEEEeCCCceEeecccccc
Confidence 3568999999999999987664
No 66
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=26.87 E-value=72 Score=26.84 Aligned_cols=66 Identities=12% Similarity=0.236 Sum_probs=39.7
Q ss_pred EEEEeCCCC----ceEEEEEeCCCCcEE-EeCCCCCCCcccCCCcccCCCCCCCceecCcEEEEEcCCCc-EEEEEEEEE
Q 010486 87 GEIGIGSPP----QNFSVIFDTGSSNLW-VPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGS-ISGFFSQDN 160 (509)
Q Consensus 87 ~~i~IGtPp----Q~~~v~lDTGSs~~W-V~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs-~~G~~~~D~ 160 (509)
+++.|..|. -++.+++|||.+..- ++...-. .-...+.. ...+.-++|. ..-....++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~~a~-------~lgl~~~~---------~~~~~tA~G~~~~~~v~~~~ 65 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPPDIVN-------KLGLPELD---------QRRVYLADGREVLTDVAKAS 65 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCHHHHH-------HcCCCccc---------CcEEEecCCcEEEEEEEEEE
Confidence 567888772 267899999999775 5432211 00111111 1234445665 456677889
Q ss_pred EEEceEEe
Q 010486 161 VEVGDVVV 168 (509)
Q Consensus 161 v~~gg~~~ 168 (509)
+.++|...
T Consensus 66 v~igg~~~ 73 (107)
T TIGR03698 66 IIINGLEI 73 (107)
T ss_pred EEECCEEE
Confidence 99998765
No 67
>PRK02710 plastocyanin; Provisional
Probab=21.26 E-value=1.2e+02 Score=25.88 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=18.6
Q ss_pred CcchhhHHHHHHHHHHHHhhh--hhccCceEEEee
Q 010486 1 MEQKLLRSVFCLWVLASCLLL--PASSNGLRRIGL 33 (509)
Q Consensus 1 m~~~~~~~~l~ll~l~~~~~~--a~~~~~~~rvpL 33 (509)
|.+|+++++..++++++..++ ..+.+..++|.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~V~~ 35 (119)
T PRK02710 1 MAKRLRSIAAALVAVVSSFGLGVSSASAETVEVKM 35 (119)
T ss_pred CchhHHHHHHHHHHHHHHHHhcccccccceEEEEE
Confidence 777877776655555553333 333445566654
No 68
>PRK14758 hypothetical protein; Provisional
Probab=21.04 E-value=1.3e+02 Score=18.65 Aligned_cols=22 Identities=9% Similarity=0.144 Sum_probs=14.2
Q ss_pred CcchhhHHHHHHHHHHHHhhhh
Q 010486 1 MEQKLLRSVFCLWVLASCLLLP 22 (509)
Q Consensus 1 m~~~~~~~~l~ll~l~~~~~~a 22 (509)
|-+|.+.=++++.+.+|++.++
T Consensus 1 Mv~RYrFEliLivlIlCalia~ 22 (27)
T PRK14758 1 MVGRYRFEFILIILILCALIAA 22 (27)
T ss_pred CchHHHHHHHHHHHHHHHHHHH
Confidence 6677666666666666666544
Done!