BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010487
(509 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N2Z|B Chain B, The Structure Of Human Prolylcarboxypeptidase At 2.80
Angstroms Resolution
Length = 446
Score = 301 bits (772), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 169/458 (36%), Positives = 258/458 (56%), Gaps = 33/458 (7%)
Query: 53 KDYKTFLYTQPLDHFNYRPDSYKTFQQRYLINFKYWDGANTSAPIFVLFGGEESIDYDRD 112
K+Y + Q +DHF + ++ KTF QRYL+ KYW I G E I + +
Sbjct: 1 KNYSVLYFQQKVDHFGF--NTVKTFNQRYLVADKYWK--KNGGSILFYTGNEGDIIWFCN 56
Query: 113 INGFLPENAPHFKALLVYIEHRYYGKSVPFGTKEEAMKNASTLGYCNSAQAIADYAAVLL 172
GF+ + A KA+LV+ EHRYYG+S+PFG + + K++ L + S QA+AD+A ++
Sbjct: 57 NTGFMWDVAEELKAMLVFAEHRYYGESLPFG--DNSFKDSRHLNFLTSEQALADFAELIK 114
Query: 173 HIKQKY-SAEKCPVIVIGGSYGGMLASWFRLKYPHIALGALASSSPILYFDGVVDPQVGY 231
H+K+ AE PVI IGGSYGGMLA+WFR+KYPH+ +GALA+S+PI F+ +V P +
Sbjct: 115 HLKRTIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPIWQFEDLV-PCGVF 173
Query: 232 YTIVTKDFKETSESCYETIRKSWGEIDEVGSRPNGLSILSKKFRTCNPLNS--TSELKDY 289
IVT DF+++ C E+I +SW I+ + + +GL L+ C+PL S LKD+
Sbjct: 174 MKIVTTDFRKSGPHCSESIHRSWDAINRLSNTGSGLQWLTGALHLCSPLTSQDIQHLKDW 233
Query: 290 LDSLYTDAAQYDEP---------PKYPVSRVCGAIDGAEGTDT--LDKIFAAV---VTYM 335
+ + + A D P P +P+ VC + +D+ L IF A+ Y
Sbjct: 234 ISETWVNLAMVDYPYASNFLQPLPAWPIKVVCQYLKNPNVSDSLLLQNIFQALNVYYNYS 293
Query: 336 GNTSCYDMKEFGSPTSTFDMFTW--QVCTELVFPIGHGHNDTMFPLAPFDLSSFSKTCEG 393
G C ++ E + TS+ W Q CTE+V P D MF ++L S C
Sbjct: 294 GQVKCLNISE--TATSSLGTLGWSYQACTEVVMPFCTNGVDDMFEPHSWNLKELSDDCFQ 351
Query: 394 LFGVQPKPHWVTTYYGGQDIKLILHNFASNIIFSNGLRDPYSSGGVLKNISDSVVALNTV 453
+GV+P+P W+TT YGG++I + +NI+FSNG DP+S GGV K+I+D++VA+
Sbjct: 352 QWGVRPRPSWITTMYGGKNI-----SSHTNIVFSNGELDPWSGGGVTKDITDTLVAVTIS 406
Query: 454 NGSHCLDILPAKESDPLWLIMQRKAEVEIIEGWLAKYH 491
G+H LD+ DP+ +++ R EV ++ W+ ++
Sbjct: 407 EGAHHLDLRTKNALDPMSVLLARSLEVRHMKNWIRDFY 444
>pdb|3JYH|A Chain A, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|B Chain B, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|C Chain C, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|D Chain D, Human Dipeptidyl Peptidase Dpp7
pdb|3N0T|A Chain A, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|B Chain B, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|C Chain C, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|D Chain D, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
Length = 469
Score = 240 bits (612), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 150/462 (32%), Positives = 230/462 (49%), Gaps = 34/462 (7%)
Query: 48 SASESKDYKTFLYTQPLDHFNYRPDSYKTFQQRYLINFKYWDGANTSAPIFVLFGGEESI 107
A + ++ + Q LDHFN+ KTF QR+L++ ++W PIF G E +
Sbjct: 1 GAMDDPGFQERFFQQRLDHFNFERFGNKTFPQRFLVSDRFW--VRGEGPIFFYTGNEGDV 58
Query: 108 DYDRDINGFLPENAPHFKALLVYIEHRYYGKSVPFGTKEEAMKNASTLGYCNSAQAIADY 167
+ + F+ E A ALLV+ EHRYYGKS+PFG + + L QA+AD+
Sbjct: 59 WAFANNSAFVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTELL---TVEQALADF 115
Query: 168 AAVLLHIKQKYSAEKCPVIVIGGSYGGMLASWFRLKYPHIALGALASSSPILYFDGVVDP 227
A +L +++ A+ P I GGSYGGML+++ R+KYPH+ GALA+S+P+L G+ D
Sbjct: 116 AELLRALRRDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPVLAVAGLGDS 175
Query: 228 QVGYYTIVTKDFKETSESCYETIRKSWGEIDEVGSRPNGLSILSKKFRTCNPLNSTSELK 287
++ VT DF+ S C + +R+++ +I ++ + + +F TC PL+ +L
Sbjct: 176 NQ-FFRDVTADFEGQSPKCTQGVREAFRQIKDLFLQ-GAYDTVRWEFGTCQPLSDEKDLT 233
Query: 288 D---YLDSLYTDAAQYDEP---------PKYPVSRVCGA-IDGAEGTDTLDKIFAAVVTY 334
+ + +T A D P P PV C + A+ L + V
Sbjct: 234 QLFMFARNAFTVLAMMDYPYPTDFLGPLPANPVKVGCDRLLSEAQRITGLRALAGLVYNA 293
Query: 335 MGNTSCYDMKEF----GSPTSTF---DMFTW--QVCTELVFPIGHGHNDTMFPLAPFDLS 385
G+ CYD+ PT D W Q CTE+ + MFP PF
Sbjct: 294 SGSEHCYDIYRLYHSCADPTGCGTGPDARAWDYQACTEINLTFASNNVTDMFPDLPFTDE 353
Query: 386 SFSKTCEGLFGVQPKPHWVTTYYGGQDIKLILHNFASNIIFSNGLRDPYSSGGVLKNISD 445
+ C +GV P+P W+ T + G D++ ASNIIFSNG DP++ GG+ +N+S
Sbjct: 354 LRQRYCLDTWGVWPRPDWLLTSFWGGDLRA-----ASNIIFSNGNLDPWAGGGIRRNLSA 408
Query: 446 SVVALNTVNGSHCLDILPAKESDPLWLIMQRKAEVEIIEGWL 487
SV+A+ G+H LD+ + DP ++ RK E II W+
Sbjct: 409 SVIAVTIQGGAHHLDLRASHPEDPASVVEARKLEATIIGEWV 450
>pdb|4EBB|A Chain A, Structure Of Dpp2
pdb|4EBB|B Chain B, Structure Of Dpp2
Length = 472
Score = 232 bits (592), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 147/455 (32%), Positives = 225/455 (49%), Gaps = 34/455 (7%)
Query: 55 YKTFLYTQPLDHFNYRPDSYKTFQQRYLINFKYWDGANTSAPIFVLFGGEESIDYDRDIN 114
++ + Q LDHFN+ KTF QR+L++ ++W PIF G E + + +
Sbjct: 5 FQERFFQQRLDHFNFERFGNKTFPQRFLVSDRFW--VRGEGPIFFYTGNEGDVWAFANNS 62
Query: 115 GFLPENAPHFKALLVYIEHRYYGKSVPFGTKEEAMKNASTLGYCNSAQAIADYAAVLLHI 174
F+ E A ALLV+ EHRYYGKS+PFG + + L QA+AD+A +L +
Sbjct: 63 AFVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTELL---TVEQALADFAELLRAL 119
Query: 175 KQKYSAEKCPVIVIGGSYGGMLASWFRLKYPHIALGALASSSPILYFDGVVDPQVGYYTI 234
++ A+ P I GGSYGG L+++ R KYPH+ GALA+S+P+L G+ D ++
Sbjct: 120 RRDLGAQDAPAIAFGGSYGGXLSAYLRXKYPHLVAGALAASAPVLAVAGLGDSNQ-FFRD 178
Query: 235 VTKDFKETSESCYETIRKSWGEIDEVGSRPNGLSILSKKFRTCNPLNSTSELKD---YLD 291
VT DF+ S C + +R+++ +I ++ + + +F TC PL+ +L +
Sbjct: 179 VTADFEGQSPKCTQGVREAFRQIKDLFLQ-GAYDTVRWEFGTCQPLSDEKDLTQLFXFAR 237
Query: 292 SLYTDAAQYDEP---------PKYPVSRVCGA-IDGAEGTDTLDKIFAAVVTYMGNTSCY 341
+ +T A D P P PV C + A+ L + V G+ CY
Sbjct: 238 NAFTVLAXXDYPYPTDFLGPLPANPVKVGCDRLLSEAQRITGLRALAGLVYNASGSEHCY 297
Query: 342 DMKEF----GSPTSTF---DMFTW--QVCTELVFPIGHGHNDTMFPLAPFDLSSFSKTCE 392
D+ PT D W Q CTE+ + FP PF + C
Sbjct: 298 DIYRLYHSCADPTGCGTGPDARAWDYQACTEINLTFASNNVTDXFPDLPFTDELRQRYCL 357
Query: 393 GLFGVQPKPHWVTTYYGGQDIKLILHNFASNIIFSNGLRDPYSSGGVLKNISDSVVALNT 452
+GV P+P W+ T + G D++ ASNIIFSNG DP++ GG+ +N+S SV+A+
Sbjct: 358 DTWGVWPRPDWLLTSFWGGDLRA-----ASNIIFSNGNLDPWAGGGIRRNLSASVIAVTI 412
Query: 453 VNGSHCLDILPAKESDPLWLIMQRKAEVEIIEGWL 487
G+H LD+ + DP ++ RK E II W+
Sbjct: 413 QGGAHHLDLRASHPEDPASVVEARKLEATIIGEWV 447
>pdb|2WIN|M Chain M, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|N Chain N, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|P Chain P, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|Q Chain Q, C3 Convertase (C3bbb) Stabilized By Scin
Length = 92
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 196 LASWFRLKYPHIALGALASSSPILYFDGVV--DPQVGYYTIVTKDFKETSESCYETIRKS 253
LA+ + + + LA+ S Y+ + Q Y + +KDFK+ SE+ Y+ ++K
Sbjct: 22 LANELKSLLDELNVNELATGSLNTYYKRTIKISGQKAMYALKSKDFKKMSEAKYQ-LQKI 80
Query: 254 WGEIDEV 260
+ EIDE
Sbjct: 81 YNEIDEA 87
>pdb|3L5N|M Chain M, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3b
Length = 88
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 196 LASWFRLKYPHIALGALASSSPILYFDGVV--DPQVGYYTIVTKDFKETSESCYETIRKS 253
LA+ + + + LA+ S Y+ + Q Y + +KDFK+ SE+ Y+ ++K
Sbjct: 18 LANELKSLLDELNVNELATGSLNTYYKRTIKISGQKAMYALKSKDFKKMSEAKYQ-LQKI 76
Query: 254 WGEIDEV 260
+ EIDE
Sbjct: 77 YNEIDEA 83
>pdb|3L3O|M Chain M, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3c
pdb|3L3O|P Chain P, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3c
pdb|3NMS|M Chain M, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement C3c
pdb|3OHX|M Chain M, Molecular Basis For Complement Recognition And Inhibition
Determined By Crystallographic Studies Of The
Staphylococcal Complement Inhibitor (Scin) Bound To C3c
And C3b
pdb|3OHX|P Chain P, Molecular Basis For Complement Recognition And Inhibition
Determined By Crystallographic Studies Of The
Staphylococcal Complement Inhibitor (Scin) Bound To C3c
And C3b
Length = 88
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 196 LASWFRLKYPHIALGALASSSPILYFDGVV--DPQVGYYTIVTKDFKETSESCYETIRKS 253
LA+ + + + LA+ S Y+ + Q Y + +KDFK+ SE+ Y+ ++K
Sbjct: 18 LANELKSLLDELNVNELATGSLNTYYKRTIKISGQKAMYALKSKDFKKMSEAKYQ-LQKI 76
Query: 254 WGEIDEV 260
+ EIDE
Sbjct: 77 YNEIDEA 83
>pdb|2QFF|A Chain A, Crystal Structure Of Staphylococcal Complement Inhibitor
Length = 82
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 196 LASWFRLKYPHIALGALASSSPILYFDGVV--DPQVGYYTIVTKDFKETSESCYETIRKS 253
LA+ + + + LA+ S Y+ + Q Y + +KDFK+ SE+ Y+ ++K
Sbjct: 15 LANELKSLLDELNVNELATGSLNTYYKRTIKISGQKAXYALKSKDFKKXSEAKYQ-LQKI 73
Query: 254 WGEIDEV 260
+ EIDE
Sbjct: 74 YNEIDEA 80
>pdb|3SVO|A Chain A, Crystal Structure Of Mkate Mutant S158aS143C AT PH 10.0
pdb|3SVO|B Chain B, Crystal Structure Of Mkate Mutant S158aS143C AT PH 10.0
pdb|3SVO|C Chain C, Crystal Structure Of Mkate Mutant S158aS143C AT PH 10.0
pdb|3SVO|D Chain D, Crystal Structure Of Mkate Mutant S158aS143C AT PH 10.0
pdb|3SVR|A Chain A, Crystal Structure Of Mkate Mutant S158aS143C AT PH 7.5
pdb|3SVR|B Chain B, Crystal Structure Of Mkate Mutant S158aS143C AT PH 7.5
pdb|3SVR|C Chain C, Crystal Structure Of Mkate Mutant S158aS143C AT PH 7.5
pdb|3SVR|D Chain D, Crystal Structure Of Mkate Mutant S158aS143C AT PH 7.5
pdb|3SVS|A Chain A, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|B Chain B, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|C Chain C, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|D Chain D, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|E Chain E, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|F Chain F, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|G Chain G, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|H Chain H, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
Length = 233
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 57/162 (35%), Gaps = 32/162 (19%)
Query: 219 LYFDGVVDPQVGYYTIVTKDFKETSES---CYETIRKSWGEIDEVGSRPNGLSILSKKFR 275
LY +G V+ FK TSE YE + ++ E G P IL+ F
Sbjct: 17 LYMEGTVN---------NHHFKCTSEGEGKPYEGTQTMRIKVVEGGPLPFAFDILATSFX 67
Query: 276 TCNPLNSTSELKDYLDSLYTDAAQYDEPPKYPVSRVCGAIDGAEGTDTLDKIFAAVVTYM 335
+ +N T + D+ + P + RV DG T T D +
Sbjct: 68 SKTFINHTQGIPDFFKQSF--------PEGFTWERVTTYEDGGVLTATQD------TSLQ 113
Query: 336 GNTSCYDMKEFG------SPTSTFDMFTWQVCTELVFPIGHG 371
Y++K G P W+ CTE+++P G
Sbjct: 114 DGCLIYNVKIRGVNFPSNGPVMQKKTLGWEACTEMLYPADGG 155
>pdb|3SVU|A Chain A, Crystal Structure Of Mkate Mutant S143c
pdb|3SVU|B Chain B, Crystal Structure Of Mkate Mutant S143c
pdb|3SVU|C Chain C, Crystal Structure Of Mkate Mutant S143c
pdb|3SVU|D Chain D, Crystal Structure Of Mkate Mutant S143c
Length = 233
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 57/162 (35%), Gaps = 32/162 (19%)
Query: 219 LYFDGVVDPQVGYYTIVTKDFKETSES---CYETIRKSWGEIDEVGSRPNGLSILSKKFR 275
LY +G V+ FK TSE YE + ++ E G P IL+ F
Sbjct: 17 LYMEGTVN---------NHHFKCTSEGEGKPYEGTQTMRIKVVEGGPLPFAFDILATSFX 67
Query: 276 TCNPLNSTSELKDYLDSLYTDAAQYDEPPKYPVSRVCGAIDGAEGTDTLDKIFAAVVTYM 335
+ +N T + D+ + P + RV DG T T D +
Sbjct: 68 SKTFINHTQGIPDFFKQSF--------PEGFTWERVTTYEDGGVLTATQD------TSLQ 113
Query: 336 GNTSCYDMKEFG------SPTSTFDMFTWQVCTELVFPIGHG 371
Y++K G P W+ CTE+++P G
Sbjct: 114 DGCLIYNVKIRGVNFPSNGPVMQKKTLGWEACTEMLYPADGG 155
>pdb|2XIN|A Chain A, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|2XIN|B Chain B, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|2XIN|C Chain C, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|2XIN|D Chain D, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
Length = 393
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 90 GANTSAPIFVLFGGEESIDYD--RDINGFLPENAPHFKALLVYIEHRYYG 137
GA A VL+GG E +YD +D++ L L Y E R YG
Sbjct: 125 GAELGAKTLVLWGGREGAEYDSAKDVSAALDRYREALNLLAQYSEDRGYG 174
>pdb|1XIN|A Chain A, Protein Engineering Of Xylose (glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|1XIN|B Chain B, Protein Engineering Of Xylose (glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|1XIN|C Chain C, Protein Engineering Of Xylose (glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|1XIN|D Chain D, Protein Engineering Of Xylose (glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|1BHW|A Chain A, Low Temperature Middle Resolution Structure Of Xylose
Isomerase From Masc Data
pdb|1BHW|B Chain B, Low Temperature Middle Resolution Structure Of Xylose
Isomerase From Masc Data
pdb|1BHW|C Chain C, Low Temperature Middle Resolution Structure Of Xylose
Isomerase From Masc Data
pdb|1BHW|D Chain D, Low Temperature Middle Resolution Structure Of Xylose
Isomerase From Masc Data
Length = 393
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 90 GANTSAPIFVLFGGEESIDYD--RDINGFLPENAPHFKALLVYIEHRYYG 137
GA A VL+GG E +YD +D++ L L Y E R YG
Sbjct: 125 GAELGAKTLVLWGGREGAEYDSAKDVSAALDRYREALNLLAQYSEDRGYG 174
>pdb|3QOE|A Chain A, Crystal Structure Of Heterocyst Differentiation Protein,
Hetr From Fischerella Mv11
pdb|3QOE|B Chain B, Crystal Structure Of Heterocyst Differentiation Protein,
Hetr From Fischerella Mv11
Length = 302
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
Query: 451 NTVNGSHCLDILPAKESDPLWLIMQRKAEV-EIIEGWLAKYHAD 493
NT+ LDILP K + Q K E+ EII W KYH D
Sbjct: 250 NTMRVLEELDILPEK-------MQQAKDELDEIIRAWADKYHQD 286
>pdb|8XIM|A Chain A, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|8XIM|B Chain B, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|8XIM|C Chain C, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|8XIM|D Chain D, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|9XIM|A Chain A, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|9XIM|B Chain B, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|9XIM|C Chain C, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|9XIM|D Chain D, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
Length = 393
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 90 GANTSAPIFVLFGGEESIDYD--RDINGFLPENAPHFKALLVYIEHRYYG 137
GA A VL+GG E +YD +D++ L L Y E R YG
Sbjct: 125 GAELGAKTLVLWGGREGAEYDSAKDVSAALDRYREALNLLAQYSEDRGYG 174
>pdb|3XIN|A Chain A, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|3XIN|B Chain B, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|3XIN|C Chain C, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|3XIN|D Chain D, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
Length = 393
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 90 GANTSAPIFVLFGGEESIDYD--RDINGFLPENAPHFKALLVYIEHRYYG 137
GA A VL+GG E +YD +D++ L L Y E R YG
Sbjct: 125 GAELGAKTLVLWGGREGAEYDSAKDVSAALDRYREALNLLAQYSEDRGYG 174
>pdb|1XIM|A Chain A, Arginine Residues As Stabilizing Elements In Proteins
pdb|1XIM|B Chain B, Arginine Residues As Stabilizing Elements In Proteins
pdb|1XIM|C Chain C, Arginine Residues As Stabilizing Elements In Proteins
pdb|1XIM|D Chain D, Arginine Residues As Stabilizing Elements In Proteins
pdb|4XIM|A Chain A, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|4XIM|B Chain B, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|4XIM|C Chain C, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|4XIM|D Chain D, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|5XIM|A Chain A, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|5XIM|B Chain B, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|5XIM|C Chain C, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|5XIM|D Chain D, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|6XIM|A Chain A, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|6XIM|B Chain B, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|6XIM|C Chain C, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|6XIM|D Chain D, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|7XIM|A Chain A, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|7XIM|B Chain B, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|7XIM|C Chain C, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|7XIM|D Chain D, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
Length = 393
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 90 GANTSAPIFVLFGGEESIDYD--RDINGFLPENAPHFKALLVYIEHRYYG 137
GA A VL+GG E +YD +D++ L L Y E R YG
Sbjct: 125 GAELGAKTLVLWGGREGAEYDSAKDVSAALDRYREALNLLAQYSEDRGYG 174
>pdb|5XIN|A Chain A, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|5XIN|B Chain B, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|5XIN|C Chain C, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|5XIN|D Chain D, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
Length = 393
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 90 GANTSAPIFVLFGGEESIDYD--RDINGFLPENAPHFKALLVYIEHRYYG 137
GA A VL+GG E +YD +D++ L L Y E R YG
Sbjct: 125 GAELGAKTLVLWGGREGAEYDSAKDVSAALDRYREALNLLAQYSEDRGYG 174
>pdb|2XIM|A Chain A, Arginine Residues As Stabilizing Elements In Proteins
pdb|2XIM|B Chain B, Arginine Residues As Stabilizing Elements In Proteins
pdb|2XIM|C Chain C, Arginine Residues As Stabilizing Elements In Proteins
pdb|2XIM|D Chain D, Arginine Residues As Stabilizing Elements In Proteins
Length = 393
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 90 GANTSAPIFVLFGGEESIDYD--RDINGFLPENAPHFKALLVYIEHRYYG 137
GA A VL+GG E +YD +D++ L L Y E R YG
Sbjct: 125 GAELGAKTLVLWGGREGAEYDSAKDVSAALDRYREALNLLAQYSEDRGYG 174
>pdb|3XIM|A Chain A, Arginine Residues As Stabilizing Elements In Proteins
pdb|3XIM|B Chain B, Arginine Residues As Stabilizing Elements In Proteins
pdb|3XIM|C Chain C, Arginine Residues As Stabilizing Elements In Proteins
pdb|3XIM|D Chain D, Arginine Residues As Stabilizing Elements In Proteins
Length = 393
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 90 GANTSAPIFVLFGGEESIDYD--RDINGFLPENAPHFKALLVYIEHRYYG 137
GA A VL+GG E +YD +D++ L L Y E R YG
Sbjct: 125 GAELGAKTLVLWGGREGAEYDSAKDVSAALDRYREALNLLAQYSEDRGYG 174
>pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
pdb|1TYP|B Chain B, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
Length = 487
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
Query: 185 VIVIGGSYGGMLASW--FRLKYPHIALGALASSSPILYFDGVVDPQVGYYTIVTKDFKET 242
++VIG GG+ A W L +A+ L ++ + V V K T
Sbjct: 7 LVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVN-VGCVPKKLMVT 65
Query: 243 SESCYETIRKSWG---EIDEVGSRPNGLSILSKKFRTCNPLNSTSE 285
+ +TIR+S G E+D RPN ++++ K + + +N + E
Sbjct: 66 GANYMDTIRESAGFGWELDRESVRPNWKALIAAKNKAVSGINDSYE 111
>pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|C Chain C, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|D Chain D, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEB|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEB|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEC|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
pdb|1FEC|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
Length = 490
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
Query: 185 VIVIGGSYGGMLASW--FRLKYPHIALGALASSSPILYFDGVVDPQVGYYTIVTKDFKET 242
++VIG GG+ A W L +A+ L ++ + V V K T
Sbjct: 6 LVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVN-VGCVPKKLMVT 64
Query: 243 SESCYETIRKSWG---EIDEVGSRPNGLSILSKKFRTCNPLNSTSE 285
+ +TIR+S G E+D RPN ++++ K + + +N + E
Sbjct: 65 GANYMDTIRESAGFGWELDRESVRPNWKALIAAKNKAVSGINDSYE 110
>pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
pdb|2TPR|B Chain B, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
Length = 490
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
Query: 185 VIVIGGSYGGMLASW--FRLKYPHIALGALASSSPILYFDGVVDPQVGYYTIVTKDFKET 242
++VIG GG+ A W L +A+ L ++ + V V K T
Sbjct: 6 LVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVN-VGCVPKKLMVT 64
Query: 243 SESCYETIRKSWG---EIDEVGSRPNGLSILSKKFRTCNPLNSTSE 285
+ +TIR+S G E+D RPN ++++ K + + +N + E
Sbjct: 65 GANYMDTIRESAGFGWELDRESVRPNWKALIAAKNKAVSGINDSYE 110
>pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
pdb|1TYT|B Chain B, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
Length = 487
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
Query: 185 VIVIGGSYGGMLASW--FRLKYPHIALGALASSSPILYFDGVVDPQVGYYTIVTKDFKET 242
++VIG GG+ A W L +A+ L ++ + V V K T
Sbjct: 7 LVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVN-VGCVPKKLMVT 65
Query: 243 SESCYETIRKSWG---EIDEVGSRPNGLSILSKKFRTCNPLNSTSE 285
+ +TIR+S G E+D RPN ++++ K + + +N + E
Sbjct: 66 GANYMDTIRESAGFGWELDRESVRPNWKALIAAKNKAVSGINDSYE 111
>pdb|3NRN|A Chain A, Crystal Structure Of Pf1083 Protein From Pyrococcus
Furiosus, Northeast Structural Genomics Consortium
Target Pfr223
Length = 421
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 232 YTIVTKDFKETSESCYETIRKSWGEIDEVGSRPNGLSILSKKFRTCNPLNST 283
YT++ + + + I K W E+ E+ P G +L++ +R NP+N T
Sbjct: 312 YTLIXAHXALKNGNVKKAIEKGWEELLEI--FPEGEPLLAQVYRDGNPVNRT 361
>pdb|1CVD|A Chain A, Structural Consequences Of Redesigning A Protein-Zinc
Binding Site
Length = 255
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 223 GVVDPQVGYYTIVTKDFKETSESCYETIRKSWGEIDEVGSRPNGLSILSKKFRTCNPLNS 282
G +D Q +T+ K + +E C +G+ + +P+GL++L + +
Sbjct: 94 GSLDGQGSEHTVDKKKY--AAELCLVHWNTKYGDFGKAVQQPDGLAVLGIFLKVGSAKPG 151
Query: 283 TSELKDYLDSLYTDAAQYD 301
++ D LDS+ T D
Sbjct: 152 LQKVVDVLDSIKTKGKSAD 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,652,701
Number of Sequences: 62578
Number of extensions: 695740
Number of successful extensions: 1768
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1746
Number of HSP's gapped (non-prelim): 26
length of query: 509
length of database: 14,973,337
effective HSP length: 103
effective length of query: 406
effective length of database: 8,527,803
effective search space: 3462288018
effective search space used: 3462288018
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)