Query 010488
Match_columns 509
No_of_seqs 239 out of 886
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 07:53:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010488.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010488hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j7za1 d.9.1.1 (A:1-67) Strom 12.6 26 0.0019 24.2 0.6 29 397-427 3-33 (67)
2 d1g55a_ c.66.1.26 (A:) DNMT2 { 9.7 2.7E+02 0.02 24.0 7.1 83 420-506 69-168 (343)
3 d1ibxa_ d.15.2.1 (A:) Caspase- 8.8 26 0.0019 25.8 -0.7 11 55-65 56-66 (81)
4 d2ezwa1 a.31.1.1 (A:12-61) cAM 8.7 52 0.0038 21.6 0.9 11 442-452 31-41 (50)
5 d2c7pa1 c.66.1.26 (A:1-327) DN 8.0 2.3E+02 0.017 24.5 5.7 71 420-495 72-160 (327)
6 d2zjr41 g.42.1.1 (4:1-37) Ribo 7.9 57 0.0042 20.2 0.8 14 496-509 18-31 (37)
7 d1zpwx1 d.58.58.1 (X:2-83) Hyp 7.7 68 0.005 23.3 1.3 31 460-490 5-39 (82)
8 d1c9fa_ d.15.2.1 (A:) Caspase- 7.5 33 0.0024 25.5 -0.6 13 55-67 59-71 (87)
9 d2ivya1 d.58.58.1 (A:2-89) Hyp 6.4 95 0.0069 22.7 1.6 32 460-491 4-40 (88)
10 d2qrda1 d.129.6.2 (A:450-576) 5.7 1E+02 0.0074 24.3 1.5 26 79-104 3-29 (127)
No 1
>d2j7za1 d.9.1.1 (A:1-67) Stromal cell-derived factor-1 (SDF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.64 E-value=26 Score=24.24 Aligned_cols=29 Identities=24% Similarity=0.474 Sum_probs=21.6
Q ss_pred cceeeeccccCCCccccccc-CCc-ccccccCC
Q 010488 397 KSILFLMPCHSTPYYSALHR-NLP-MRFLDCSP 427 (509)
Q Consensus 397 ~sv~fl~pChstP~ys~LH~-~i~-~~fL~C~P 427 (509)
.|+..-.||-+|. |++.+ +++ +.||.|+-
T Consensus 3 iSl~~Rc~cr~~~--s~vpr~~i~~Lk~l~tpn 33 (67)
T d2j7za1 3 VSLSYRCPCRFFE--SHVARANVKHLKILNTPN 33 (67)
T ss_dssp TTTCCSCSCSSCB--SCCCGGGEEEEEEECCTT
T ss_pred cchhhccchhhhh--ccCchhcCcccccccCCC
Confidence 3555677999987 88888 776 88888753
No 2
>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.72 E-value=2.7e+02 Score=23.98 Aligned_cols=83 Identities=12% Similarity=0.124 Sum_probs=42.3
Q ss_pred ccccccCCC--------CcCCCCChhhhhhcChHHHHHhhcCCCCCCCEEEEcchhH--------HHHHHhhhcCCcEEE
Q 010488 420 MRFLDCSPR--------EEKGILDESDRFMKDPVAFTSEITKNGSLPSHVVLFGSEE--------ILLRDLLKSYSFREI 483 (509)
Q Consensus 420 ~~fL~C~P~--------~~~~y~de~d~Fy~~p~~~l~~~~~~~~~P~~lv~f~~l~--------~~~~~~L~~~~y~~~ 483 (509)
...|...|| .+.+-.||....+-.-..++.+ .. ..|.++|+ |+.. +.+.+-|++.||+..
T Consensus 69 ~Dll~ggpPCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~-~~--~kPk~~i~-ENV~~l~~~~~~~~i~~~l~~~GY~v~ 144 (343)
T d1g55a_ 69 FDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPR-LQ--KLPKYILL-ENVKGFEVSSTRDLLIQTIENCGFQYQ 144 (343)
T ss_dssp CSEEEECCC------------------CHHHHHHHHGGG-CS--SCCSEEEE-EEETTGGGSHHHHHHHHHHHHTTEEEE
T ss_pred ccEEEeecccccccccccccccccccccccchhhhhHhh-hc--CCCceeee-eccCCcccchhhHHHHhhhhccccccc
Confidence 455777777 2223345544444444444433 21 14887655 4432 346677888999999
Q ss_pred EEecCCCCccCC-CCCCeEEEEee
Q 010488 484 RRFFHAHFKVDR-DLQASVVVYAL 506 (509)
Q Consensus 484 ~~~f~s~~~~~~-~~~~~v~v~~~ 506 (509)
++..|+.-..-+ +|++-++|=.+
T Consensus 145 ~~vlna~dyGvPQ~R~Rvfivg~r 168 (343)
T d1g55a_ 145 EFLLSPTSLGIPNSRLRYFLIAKL 168 (343)
T ss_dssp EEEECGGGGTCSCCCCEEEEEEEE
T ss_pred eeeeeccccCCcccceeEEEEEEe
Confidence 999998543333 34444444333
No 3
>d1ibxa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.78 E-value=26 Score=25.82 Aligned_cols=11 Identities=0% Similarity=0.193 Sum_probs=9.2
Q ss_pred ccCCCChHHHH
Q 010488 55 PDEHWQTLEVA 65 (509)
Q Consensus 55 pDE~fQslE~a 65 (509)
-|||||++|+=
T Consensus 56 ~EeYF~tLp~n 66 (81)
T d1ibxa_ 56 TEDYFPSVPDN 66 (81)
T ss_dssp CSSSCSSCCSC
T ss_pred eHHHHhcCCCC
Confidence 58999999873
No 4
>d2ezwa1 a.31.1.1 (A:12-61) cAMP-dependent protein kinase type I-alpha regulatory subunit {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.67 E-value=52 Score=21.63 Aligned_cols=11 Identities=36% Similarity=0.567 Sum_probs=8.2
Q ss_pred cChHHHHHhhc
Q 010488 442 KDPVAFTSEIT 452 (509)
Q Consensus 442 ~~p~~~l~~~~ 452 (509)
+||.+||+++|
T Consensus 31 e~P~~FLreyF 41 (50)
T d2ezwa1 31 ERPMAFLREYF 41 (50)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 47888888775
No 5
>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}
Probab=7.96 E-value=2.3e+02 Score=24.54 Aligned_cols=71 Identities=13% Similarity=0.084 Sum_probs=41.2
Q ss_pred ccccccCCC--------CcCCCCChhhhhhcChHHHHHhhcCCCCCCCEEEEcch----------hHHHHHHhhhcCCcE
Q 010488 420 MRFLDCSPR--------EEKGILDESDRFMKDPVAFTSEITKNGSLPSHVVLFGS----------EEILLRDLLKSYSFR 481 (509)
Q Consensus 420 ~~fL~C~P~--------~~~~y~de~d~Fy~~p~~~l~~~~~~~~~P~~lv~f~~----------l~~~~~~~L~~~~y~ 481 (509)
...|...|| .+.+..|+....+..-..++... -|.++++=+. ..+.+.+-|++.||+
T Consensus 72 ~Dll~ggpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~-----kP~~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY~ 146 (327)
T d2c7pa1 72 HDILCAGFPCQAFSISGKQKGFEDSRGTLFFDIARIVREK-----KPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYS 146 (327)
T ss_dssp CSEEEEECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHH-----CCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBC
T ss_pred eeeeecccccchhhhhhhhcCCcccchhHHHHHHHHHhcc-----CCcEEecccchhhhhhccchhhHHhhhHHHhcCCc
Confidence 445666676 22233344444444445555443 2777765322 123466678889999
Q ss_pred EEEEecCCCCccCC
Q 010488 482 EIRRFFHAHFKVDR 495 (509)
Q Consensus 482 ~~~~~f~s~~~~~~ 495 (509)
......|+.-..-+
T Consensus 147 ~~~~vl~a~~~GvP 160 (327)
T d2c7pa1 147 FHAKVLNALDYGIP 160 (327)
T ss_dssp CEEEEEEGGGGTCS
T ss_pred ceeeEecHHHcCCC
Confidence 99999888544443
No 6
>d2zjr41 g.42.1.1 (4:1-37) Ribosomal protein L36 {Deinococcus radiodurans [TaxId: 1299]}
Probab=7.89 E-value=57 Score=20.16 Aligned_cols=14 Identities=14% Similarity=0.145 Sum_probs=11.2
Q ss_pred CCCCeEEEEeecCC
Q 010488 496 DLQASVVVYALTSE 509 (509)
Q Consensus 496 ~~~~~v~v~~~~~~ 509 (509)
||+|.+.|.|.+++
T Consensus 18 rR~g~v~ViC~npk 31 (37)
T d2zjr41 18 RRHGRVLVICSNVK 31 (37)
T ss_dssp ECSSCEEECCSSST
T ss_pred EeCCEEEEEeCCCC
Confidence 68899999887664
No 7
>d1zpwx1 d.58.58.1 (X:2-83) Hypothetical protein TTP0101 (TT1823) {Thermus thermophilus [TaxId: 274]}
Probab=7.72 E-value=68 Score=23.26 Aligned_cols=31 Identities=29% Similarity=0.296 Sum_probs=23.0
Q ss_pred EEEEcchhHH----HHHHhhhcCCcEEEEEecCCC
Q 010488 460 HVVLFGSEEI----LLRDLLKSYSFREIRRFFHAH 490 (509)
Q Consensus 460 ~lv~f~~l~~----~~~~~L~~~~y~~~~~~f~s~ 490 (509)
|||.||--++ ++.++|++.|.+.-++.|=..
T Consensus 5 ylV~YDI~d~krr~kv~k~l~~yg~rvQ~SVFe~~ 39 (82)
T d1zpwx1 5 YAVAYDIPDDTRRVKLANLLKSYGERVQLSVFECY 39 (82)
T ss_dssp EEEEEECCCHHHHHHHHHHHHTTEEEEETTEEEEE
T ss_pred EEEEEeCCCcHHHHHHHHHHHHhCccceEEEEEEE
Confidence 7999987554 588999988877666666543
No 8
>d1c9fa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.49 E-value=33 Score=25.54 Aligned_cols=13 Identities=15% Similarity=0.235 Sum_probs=10.0
Q ss_pred ccCCCChHHHHHH
Q 010488 55 PDEHWQTLEVAHR 67 (509)
Q Consensus 55 pDE~fQslE~ah~ 67 (509)
-|||||++|+=-.
T Consensus 59 dEeYF~tLp~nT~ 71 (87)
T d1c9fa_ 59 TDDCFPGLPNDAE 71 (87)
T ss_dssp CTTSCSSCCTTEE
T ss_pred cHHHHhcCCCCCE
Confidence 4899999997433
No 9
>d2ivya1 d.58.58.1 (A:2-89) Hypothetical protein SSO1404 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=6.35 E-value=95 Score=22.72 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=23.0
Q ss_pred EEEEcchhHH----HHHHhhhcCC-cEEEEEecCCCC
Q 010488 460 HVVLFGSEEI----LLRDLLKSYS-FREIRRFFHAHF 491 (509)
Q Consensus 460 ~lv~f~~l~~----~~~~~L~~~~-y~~~~~~f~s~~ 491 (509)
+||.||--++ ++.++|++.| .+.-++.|=...
T Consensus 4 ~lV~YDI~d~krr~kv~k~l~~yGl~rvQ~SVFeg~l 40 (88)
T d2ivya1 4 YLIFYDITDDNLRNRVAEFLKKKGLDRIQYSVFMGDL 40 (88)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHTTCEEEETTEEEEEE
T ss_pred EEEEEECCCcHHHHHHHHHHHHhCCcceEeeEEEEEe
Confidence 6888987654 5889999999 566666665433
No 10
>d2qrda1 d.129.6.2 (A:450-576) Snf1-like protein kinase ssp2 {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=5.75 E-value=1e+02 Score=24.29 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=22.1
Q ss_pred cccCCcchhHHH-HHHHHHHHHHHhcC
Q 010488 79 WKKGIRSYLHPM-LFALLYKILVFLHL 104 (509)
Q Consensus 79 w~~~lRS~~~p~-l~a~~~~~l~~l~l 104 (509)
|+-||||=-.|. +..-+|+.++.+|.
T Consensus 3 WhfGIRSrs~P~eiM~eVYrALk~Lg~ 29 (127)
T d2qrda1 3 WHFGVRCRGDAPEILLAVYRALQRAGA 29 (127)
T ss_dssp CEESEEEESCHHHHHHHHHHHHHHHTC
T ss_pred ceeccccCCChHHHHHHHHHHHHHcCC
Confidence 566999999998 77889999999875
Done!