BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010490
(509 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ASY|A Chain A, Ligand-Free Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASY|B Chain B, Ligand-Free Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASZ|A Chain A, Cmp-Complex Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASZ|B Chain B, Cmp-Complex Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
Length = 211
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 101/195 (51%), Gaps = 15/195 (7%)
Query: 67 ILVGVAGPSGAGKTVFTEKVLNFMPS-IAVITMDNY-NDSSRI-----IDGNFDDPRLTD 119
++G+AG + +GKT + + + +A++ MD+Y D + + N+D P D
Sbjct: 7 FVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFD 66
Query: 120 YDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK-LRPLI 178
LE+ + L G V++P+YDF++ +R RT P+ +VI+EGI L K LR L+
Sbjct: 67 LALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAP-VVILEGILVLYPKELRDLM 125
Query: 179 DLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238
DL+V V ++R+ RD+ G+ E ++ Q E V PM+ F+EP + A + +
Sbjct: 126 DLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVIVP 185
Query: 239 NKFNPFTGFQNPTYI 253
G QNP +
Sbjct: 186 R------GGQNPVAL 194
>pdb|1XRJ|A Chain A, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
pdb|1XRJ|B Chain B, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
Length = 261
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 98/189 (51%), Gaps = 19/189 (10%)
Query: 67 ILVGVAGPSGAGKTVFTEKVLNFM---------PSIAVITMDNY------NDSSRIIDG- 110
L+GV+G + +GK+ K++ + + +++ D++ ++ + G
Sbjct: 21 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQ 80
Query: 111 -NFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169
NFD P D + +L+ ++ + EGK VQ+P+YDF S SR T+ V + +V+ EGI A
Sbjct: 81 FNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSR-KEETVTVYPADVVLFEGILA 139
Query: 170 L-SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEP 228
S+++R L +++ V L +RV RDI G++ E+I+ Q V P ++ F P
Sbjct: 140 FYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLP 199
Query: 229 DLQTAHIKI 237
+ A + I
Sbjct: 200 TKKYADVII 208
>pdb|2JEO|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1
pdb|2UVQ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1 In
Complex With Adp
Length = 245
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 98/189 (51%), Gaps = 20/189 (10%)
Query: 67 ILVGVAGPSGAGKTVFTEKVLNFMPS---------IAVITMDNY------NDSSRIIDG- 110
L+GV+G + +GK+ EK++ + + +++ D + ++ + G
Sbjct: 26 FLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQ 85
Query: 111 -NFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169
NFD P D D + ++ + EGK V+VP YDF + SR+ T+ P+ +V+ EGI
Sbjct: 86 YNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPAD-VVLFEGILV 144
Query: 170 L-SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEP 228
S+++R + LR+ V L +RV RD++R G++ E+I+ Q + V P ++ F P
Sbjct: 145 FYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDVRR-GRDLEQILTQYTTFVKPAFEEFCLP 203
Query: 229 DLQTAHIKI 237
+ A + I
Sbjct: 204 TKKYADVII 212
>pdb|1UDW|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UDW|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UEI|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEI|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEJ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UEJ|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UFQ|A Chain A, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|B Chain B, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|C Chain C, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|D Chain D, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UJ2|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
pdb|1UJ2|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
Length = 252
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 98/189 (51%), Gaps = 19/189 (10%)
Query: 67 ILVGVAGPSGAGKTVFTEKVLNFM---------PSIAVITMDNY------NDSSRIIDG- 110
L+GV+G + +GK+ K++ + + +++ D++ ++ + G
Sbjct: 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQ 82
Query: 111 -NFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169
NFD P D + +L+ ++ + EGK VQ+P+YDF S SR T+ V + +V+ EGI A
Sbjct: 83 FNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSR-KEETVTVYPADVVLFEGILA 141
Query: 170 L-SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEP 228
S+++R L +++ V L +RV RDI G++ E+I+ Q V P ++ F P
Sbjct: 142 FYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLP 201
Query: 229 DLQTAHIKI 237
+ A + I
Sbjct: 202 TKKYADVII 210
>pdb|1RZ3|A Chain A, Structure Of A Possible Uridine Kinase From Bacillus
Stearothermophilus
Length = 201
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 80/178 (44%), Gaps = 23/178 (12%)
Query: 58 LLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNY--NDSSRIIDGN 111
+LA K G +++G+ G S +GKT ++ + S+ V D++ + R GN
Sbjct: 14 ILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHXDDHIVERAKRYHTGN 73
Query: 112 ---FDDPRLT-DYDTLLENI-RGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEG 166
F+ L D + L + R LK + +P YD ++ + RT+ + S + IEG
Sbjct: 74 EEWFEYYYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTH-SKRTVYLSDSDXIXIEG 132
Query: 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKA 224
++ ++ RP D V+ D + + R +E +++ I + + +KA
Sbjct: 133 VFLQRKEWRPFFDF------VVYLDCPREI-----RFARENDQVKQNIQKFINRYWKA 179
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLE 125
+ G SGAGKTV T++V+ + +IA + S + G +D ++ + LLE
Sbjct: 174 ITGESGAGKTVNTKRVIQYFATIAASGEKKKEEQSGKMQGTLED-QIISANPLLE 227
>pdb|2QOR|A Chain A, Crystal Structure Of Plasmodium Vivax Guanylate Kinase
Length = 204
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGL 130
V GPSG GK +KVL+ PS ++ + R + N D D D R L
Sbjct: 17 VCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFE---RKL 73
Query: 131 KEGKAVQVPIY--DFKSSSRIGYRTLEVPSSRIVIIE----GIYALSE 172
KEG+ ++ Y +F + + Y L V +I + E G+ L E
Sbjct: 74 KEGQFLEFDKYANNFYGTLKSEY-DLAVGEGKICLFEXNINGVKQLKE 120
>pdb|2QG6|A Chain A, Crystal Structure Of Human Nicotinamide Riboside Kinase
(Nrk1) In Complex With Nicotinamide Mononucleotide (Nmn)
pdb|2QL6|A Chain A, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|B Chain B, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|C Chain C, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|D Chain D, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|E Chain E, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|F Chain F, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|G Chain G, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|H Chain H, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|I Chain I, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|J Chain J, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|K Chain K, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|L Chain L, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|M Chain M, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|N Chain N, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|O Chain O, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|P Chain P, Human Nicotinamide Riboside Kinase (Nrk1)
Length = 199
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLEN 126
++G++G + +GKT + + +P+ +VI+ D++ I+ D YD +LE
Sbjct: 4 FIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIET--DKNGFLQYD-VLEA 60
Query: 127 IRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSR---IVIIEGIYALSEK 173
+ K A+ + S+R + + S+ I+IIEG + K
Sbjct: 61 LNXEKXXSAISC----WXESARHSVVSTDQESAEEIPILIIEGFLLFNYK 106
>pdb|2P0E|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With
Tiazofurin
pdb|2QSY|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With Adp
pdb|2QSZ|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With
Nicotinamide Mononucleotide
pdb|2QT0|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With
Nicotinamide Riboside And An Atp Analogue
pdb|2QT1|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With
Nicotinamide Riboside
Length = 207
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLT 118
L + ++G++G + +GKT + + +P+ +VI+ D++ I+ D
Sbjct: 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIET--DKNGFL 71
Query: 119 DYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSR---IVIIEGIYALSEK 173
YD +LE + K A+ + S+R + + S+ I+IIEG + K
Sbjct: 72 QYD-VLEALNXEKXXSAISC----WXESARHSVVSTDQESAEEIPILIIEGFLLFNYK 124
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
Length = 3245
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
Query: 63 NHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIID 109
NHG+++VG PSG GKT E L A+ +DN + ++D
Sbjct: 906 NHGVMMVG---PSGGGKTTSWEVYLE-----AIEQVDNIKSEAHVMD 944
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
Query: 63 NHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIID 109
NHG+++VG PSG GKT E L A+ +DN + ++D
Sbjct: 906 NHGVMMVG---PSGGGKTTSWEVYLE-----AIEQVDNIKSEAHVMD 944
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLE 125
+ G SGAGKTV T +V+ + +IA + S + G +D ++ + LLE
Sbjct: 177 ITGESGAGKTVNTXRVIQYFATIAASGEKKKEEQSGKMQGTLED-QIISANPLLE 230
>pdb|3RHG|A Chain A, Crystal Structure Of Amidohydrolase Pmi1525 (Target
Efi-500319) From Proteus Mirabilis Hi4320
Length = 365
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 14/131 (10%)
Query: 381 GRDRLYVKYVGEQLGLDGSYVPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDDLVSSPK 440
GRD +K V E G++ YIE+ + ++L +D+ A+ + +L+I D
Sbjct: 102 GRDIRKLKQVAELTGINVVASSGLYIEKFEGKRLADDIDAMAKMIDDELNIGID------ 155
Query: 441 EALSRASADRRTKYLSRSISNSFSNQREKNLTKLARVAVNNRRFDGRTPESPASL--ANQ 498
D R + + F EKN + A +A NN + P ++
Sbjct: 156 ------GTDIRAGMIGEIGVSPFFTDGEKNSLRAAALAQNNNPYASMNIHMPGWQRRGDE 209
Query: 499 VSIIVFWTEGC 509
V I+ GC
Sbjct: 210 VLDILLTEMGC 220
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLE 125
+ G SGAGKTV T +V+ + +IA + S + G +D ++ + LLE
Sbjct: 174 ITGESGAGKTVNTXRVIQYFATIAASGEKKKEEQSGKMQGTLED-QIISANPLLE 227
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDD 114
+ G SGAGKT T+KV+ ++ +A ++S +G+ +D
Sbjct: 169 ITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLED 212
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
pdb|4DB1|B Chain B, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
Length = 783
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS 105
+ G SGAGKTV T++V+ + IA I + D S
Sbjct: 176 ITGESGAGKTVNTKRVIQYFAVIAAIGDRSKKDQS 210
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDD 114
+ G SGAGKT T+KV+ ++ +A ++S +G+ +D
Sbjct: 170 ITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLED 213
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIA 94
+ G SGAGKT T+KV+ ++ S+A
Sbjct: 177 ITGESGAGKTENTKKVIQYLASVA 200
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDD 114
+ G SGAGKT T+KV+ ++ +A ++S +G+ +D
Sbjct: 174 ITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLED 217
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDD 114
+ G SGAGKT T+KV+ ++ +A ++S +G+ +D
Sbjct: 174 ITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLED 217
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDD 114
+ G SGAGKT T+KV+ ++ +A ++S +G+ +D
Sbjct: 174 ITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLED 217
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 776
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIA 94
+ G SGAGKT T+KV+ ++ S+A
Sbjct: 188 ITGESGAGKTENTKKVIQYLASVA 211
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e
Bound With Mgadp-Alf4
Length = 770
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIA 94
+ G SGAGKT T+KV+ ++ S+A
Sbjct: 177 ITGESGAGKTENTKKVIQYLASVA 200
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Alf4
Length = 770
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIA 94
+ G SGAGKT T+KV+ ++ S+A
Sbjct: 177 ITGESGAGKTENTKKVIQYLASVA 200
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIA 94
+ G SGAGKT T+KV+ ++ S+A
Sbjct: 188 ITGESGAGKTENTKKVIQYLASVA 211
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIA 94
+ G SGAGKT T+KV+ ++ S+A
Sbjct: 176 ITGESGAGKTENTKKVIQYLASVA 199
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With
Bound Mgadp-Befx
Length = 770
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIA 94
+ G SGAGKT T+KV+ ++ S+A
Sbjct: 177 ITGESGAGKTENTKKVIQYLASVA 200
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
pdb|2Y8I|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIA 94
+ G SGAGKT T+KV+ ++ S+A
Sbjct: 176 ITGESGAGKTENTKKVIQYLASVA 199
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Befx
Length = 770
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIA 94
+ G SGAGKT T+KV+ ++ S+A
Sbjct: 177 ITGESGAGKTENTKKVIQYLASVA 200
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With M-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D0Y|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O-Nitrophenyl Aminoethyldiphosphate
Beryllium Fluoride.
pdb|1D0Z|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With P-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1A|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1B|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminopropyldiphosphate
Beryllium Trifluoride.
pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With N-Methyl-O-Nitrophenyl
Aminoethyldiphosphate Beryllium Trifluoride
Length = 761
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIA 94
+ G SGAGKT T+KV+ ++ S+A
Sbjct: 177 ITGESGAGKTENTKKVIQYLASVA 200
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIA 94
+ G SGAGKT T+KV+ ++ S+A
Sbjct: 177 ITGESGAGKTENTKKVIQYLASVA 200
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum
Motor Domain S456y Mutant In Complex With
Adp-Orthovanadate
Length = 692
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIA 94
+ G SGAGKT T+KV+ ++ S+A
Sbjct: 176 ITGESGAGKTENTKKVIQYLASVA 199
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of
Dictyostellium Myosin Ii
pdb|1FMW|A Chain A, Crystal Structure Of The Mgatp Complex For The Motor
Domain Of Dictyostelium Myosin Ii
Length = 761
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIA 94
+ G SGAGKT T+KV+ ++ S+A
Sbjct: 177 ITGESGAGKTENTKKVIQYLASVA 200
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And
Specificity For Myosin Ii
pdb|3BZ7|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ8|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ9|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
Length = 762
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIA 94
+ G SGAGKT T+KV+ ++ S+A
Sbjct: 177 ITGESGAGKTENTKKVIQYLASVA 200
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIA 94
+ G SGAGKT T+KV+ ++ S+A
Sbjct: 177 ITGESGAGKTENTKKVIQYLASVA 200
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentachlorocarbazole
Length = 695
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIA 94
+ G SGAGKT T+KV+ ++ S+A
Sbjct: 176 ITGESGAGKTENTKKVIQYLASVA 199
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N-
Methylanthraniloyl) Nucleotide Bound To Dictyostelium
Discoideum Myosin Motor Domain
Length = 762
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIA 94
+ G SGAGKT T+KV+ ++ S+A
Sbjct: 177 ITGESGAGKTENTKKVIQYLASVA 200
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Resveratrol
Length = 788
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIA 94
+ G SGAGKT T+KV+ ++ S+A
Sbjct: 188 ITGESGAGKTENTKKVIQYLASVA 211
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIA 94
+ G SGAGKT T+KV+ ++ S+A
Sbjct: 177 ITGESGAGKTENTKKVIQYLASVA 200
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated
Inhibition Of Myosin Motor Activity
pdb|4AE3|A Chain A, Crystal Structure Of Ammosamide 272:myosin-2 Motor Domain
Complex
Length = 776
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIA 94
+ G SGAGKT T+KV+ ++ S+A
Sbjct: 176 ITGESGAGKTENTKKVIQYLASVA 199
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentabromopseudilin
pdb|2JJ9|A Chain A, Crystal Structure Of Myosin-2 In Complex With Adp-
Metavanadate
pdb|3MJX|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Blebbistatin
Length = 788
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIA 94
+ G SGAGKT T+KV+ ++ S+A
Sbjct: 188 ITGESGAGKTENTKKVIQYLASVA 211
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With
Tribromodichloropseudilin
Length = 776
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIA 94
+ G SGAGKT T+KV+ ++ S+A
Sbjct: 176 ITGESGAGKTENTKKVIQYLASVA 199
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYK|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYL|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
Length = 762
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIA 94
+ G SGAGKT T+KV+ ++ S+A
Sbjct: 177 ITGESGAGKTENTKKVIQYLASVA 200
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Bef3
pdb|1MND|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Alf4
pdb|1MNE|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mg-Pyrophosphate
pdb|1VOM|A Chain A, Complex Between Dictyostelium Myosin And Mgadp And
Vanadate At 1.9a Resolution
Length = 762
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 71 VAGPSGAGKTVFTEKVLNFMPSIA 94
+ G SGAGKT T+KV+ ++ S+A
Sbjct: 177 ITGESGAGKTENTKKVIQYLASVA 200
>pdb|2HF8|A Chain A, Crystal Structure Of Hypb From Methanocaldococcus
Jannaschii In The Triphosphate Form, In Complex With
Zinc
pdb|2HF8|B Chain B, Crystal Structure Of Hypb From Methanocaldococcus
Jannaschii In The Triphosphate Form, In Complex With
Zinc
Length = 226
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 52 VIRACQLLAQKN------HGIILVGVAGPSGAGKTVFTEKVLNFMP---SIAVITMD 99
+++A + LA KN HG++ G G+GKT+ EK+++ + IA I D
Sbjct: 18 ILKANKRLADKNRKLLNKHGVVAFDFXGAIGSGKTLLIEKLIDNLKDKYKIACIAGD 74
>pdb|2HF9|A Chain A, Crystal Structure Of Hypb From Methanocaldococcus
Jannaschii In The Triphosphate Form
pdb|2HF9|B Chain B, Crystal Structure Of Hypb From Methanocaldococcus
Jannaschii In The Triphosphate Form
Length = 226
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 52 VIRACQLLAQKN------HGIILVGVAGPSGAGKTVFTEKVLNFMP---SIAVITMD 99
+++A + LA KN HG++ G G+GKT+ EK+++ + IA I D
Sbjct: 18 ILKANKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGD 74
>pdb|3LNC|A Chain A, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
pdb|3LNC|B Chain B, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
Length = 231
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 6/41 (14%)
Query: 62 KNHGIILVGVAGPSGAGKTVFTEKVL-----NFMPSIAVIT 97
K+ G+ILV ++ PSG GKT K+L N + S++V T
Sbjct: 24 KSVGVILV-LSSPSGCGKTTVANKLLEKQKNNIVKSVSVTT 63
>pdb|1OI4|A Chain A, Crystal Structure Of Yhbo From Escherichia Coli
pdb|1OI4|B Chain B, Crystal Structure Of Yhbo From Escherichia Coli
Length = 193
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 43/110 (39%), Gaps = 12/110 (10%)
Query: 264 EIKAVMSKEHTETTEETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSP--F 321
E + K E T +D LLP G PD YLR NR + ++V F
Sbjct: 70 EASVTIDKSIDEVTPAEFDALLLPGGHSPD----YLRGDNR---FVTFTRDFVNSGKPVF 122
Query: 322 IISPRITFEVSVRLLGG--LMALGYTIATILKRSSHIFYDDRVCVKTDWL 369
I +S ++ G L A+ I + K + FYD V V D L
Sbjct: 123 AICHGPQLLISADVIRGRKLTAVKPIIIDV-KNAGAEFYDQEVVVDKDQL 171
>pdb|1DL2|A Chain A, Crystal Structure Of Class I Alpha-1,2-Mannosidase From
Saccharomyces Cerevisiae At 1.54 Angstrom Resolution
Length = 511
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 286 LPPGEDP------DACQSYLRMRNRDGKYNLMFE-------EWVTDS-PFIISPRIT-FE 330
+P G P D+ + + M N Y FE W+ D F I + FE
Sbjct: 40 MPRGNQPLGWIIVDSVDTLMLMYNSSTLYKSEFEAEIQRSEHWINDVLDFDIDAEVNVFE 99
Query: 331 VSVRLLGGLMALGYTIATILKRSSHIFYDDRV 362
++R+LGGL++ Y ++ +L+ + Y ++
Sbjct: 100 TTIRMLGGLLS-AYHLSDVLEVGNKTVYLNKA 130
>pdb|1G6I|A Chain A, Crystal Structure Of The Yeast Alpha-1,2-Mannosidase With
Bound 1- Deoxymannojirimycin At 1.59 A Resolution
Length = 545
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 286 LPPGEDP------DACQSYLRMRNRDGKYNLMFE-------EWVTDS-PFIISPRIT-FE 330
+P G P D+ + + M N Y FE W+ D F I + FE
Sbjct: 74 MPRGNQPLGWIIVDSVDTLMLMYNSSTLYKSEFEAEIQRSEHWINDVLDFDIDAEVNVFE 133
Query: 331 VSVRLLGGLMALGYTIATILKRSSHIFYDDRV 362
++R+LGGL++ Y ++ +L+ + Y ++
Sbjct: 134 TTIRMLGGLLS-AYHLSDVLEVGNKTVYLNKA 164
>pdb|1KEA|A Chain A, Structure Of A Thermostable Thymine-Dna Glycosylase
Length = 221
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Query: 418 VMALPDDLKTKLSIDDDLVSSPKEALSRASADRRTKYLSRSISNSFSNQREKNLTKLARV 477
V + D K +D++ +PK +++ + SNQR + L +LARV
Sbjct: 53 VKKIYDKFFVKYKCFEDILKTPKSEIAKDIKE-----------IGLSNQRAEQLKELARV 101
Query: 478 AVNNRRFDGRTPESPASL 495
+N+ + GR P + ++
Sbjct: 102 VIND--YGGRVPRNRKAI 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,021,963
Number of Sequences: 62578
Number of extensions: 638611
Number of successful extensions: 1941
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1891
Number of HSP's gapped (non-prelim): 75
length of query: 509
length of database: 14,973,337
effective HSP length: 103
effective length of query: 406
effective length of database: 8,527,803
effective search space: 3462288018
effective search space used: 3462288018
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)