Query 010493
Match_columns 509
No_of_seqs 206 out of 634
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 01:10:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010493.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010493hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1362 Choline transporter-li 100.0 6.8E-65 1.5E-69 547.4 34.3 363 121-488 141-558 (577)
2 PF04515 Choline_transpo: Plas 100.0 2.1E-59 4.6E-64 483.2 27.0 288 188-475 3-329 (334)
3 KOG1924 RhoA GTPase effector D 97.2 0.00067 1.5E-08 75.1 6.4 22 207-228 795-816 (1102)
4 KOG1924 RhoA GTPase effector D 96.7 0.0028 6E-08 70.4 6.6 21 485-505 1046-1066(1102)
5 PRK15319 AIDA autotransporter- 93.6 0.082 1.8E-06 64.4 5.1 9 287-295 1844-1852(2039)
6 PRK09752 adhesin; Provisional 89.6 0.32 7E-06 57.4 4.0 10 287-296 1063-1072(1250)
7 PHA03247 large tegument protei 88.5 0.84 1.8E-05 57.6 6.5 19 205-223 3121-3139(3151)
8 KOG3895 Synaptic vesicle prote 87.7 1.3 2.9E-05 45.9 6.4 42 28-71 424-465 (488)
9 COG5178 PRP8 U5 snRNP spliceos 84.2 0.74 1.6E-05 53.9 2.9 9 221-229 234-242 (2365)
10 COG5178 PRP8 U5 snRNP spliceos 83.1 0.9 2E-05 53.2 3.0 8 147-154 123-130 (2365)
11 PF05750 Rubella_Capsid: Rubel 79.0 1.9 4.1E-05 40.7 3.2 40 28-67 80-128 (300)
12 PRK15313 autotransport protein 77.0 3.7 8E-05 47.9 5.3 9 287-295 756-764 (955)
13 KOG1925 Rac1 GTPase effector F 71.5 4.7 0.0001 43.7 4.1 35 23-57 229-267 (817)
14 KOG3397 Acetyltransferases [Ge 70.3 5.4 0.00012 37.6 3.8 7 32-38 173-179 (225)
15 PTZ00449 104 kDa microneme/rho 67.0 11 0.00024 41.3 5.8 28 38-65 632-660 (943)
16 PHA03211 serine/threonine kina 66.6 5.3 0.00011 43.5 3.5 8 80-87 65-72 (461)
17 KOG2391 Vacuolar sorting prote 64.6 13 0.00028 38.6 5.5 15 55-69 168-182 (365)
18 KOG3397 Acetyltransferases [Ge 64.2 6.9 0.00015 36.9 3.2 13 28-40 173-185 (225)
19 KOG2391 Vacuolar sorting prote 64.0 14 0.0003 38.3 5.6 16 38-53 165-180 (365)
20 PRK14948 DNA polymerase III su 59.6 26 0.00056 39.8 7.4 8 10-17 505-512 (620)
21 COG5373 Predicted membrane pro 53.2 22 0.00047 41.1 5.3 13 36-48 71-83 (931)
22 PF10110 GPDPase_memb: Membran 51.0 50 0.0011 30.0 6.6 32 367-398 104-135 (149)
23 KOG1955 Ral-GTPase effector RA 48.8 29 0.00063 37.8 5.1 12 28-39 492-503 (737)
24 KOG4849 mRNA cleavage factor I 48.6 21 0.00045 37.2 3.9 7 7-13 244-250 (498)
25 KOG0391 SNF2 family DNA-depend 48.4 25 0.00053 42.4 4.8 11 41-51 1904-1914(1958)
26 KOG4090 Uncharacterized conser 47.2 42 0.00091 31.0 5.2 13 32-44 16-28 (157)
27 KOG1546 Metacaspase involved i 45.9 29 0.00063 36.0 4.5 7 53-59 43-49 (362)
28 KOG1922 Rho GTPase effector BN 45.5 50 0.0011 38.8 7.1 13 377-389 716-728 (833)
29 PTZ00449 104 kDa microneme/rho 44.8 50 0.0011 36.4 6.2 10 48-57 636-645 (943)
30 PLN02983 biotin carboxyl carri 44.5 58 0.0013 33.0 6.2 13 12-24 132-144 (274)
31 KOG1945 Protein phosphatase 1 44.2 16 0.00035 38.1 2.4 9 55-63 53-61 (377)
32 PF07462 MSP1_C: Merozoite sur 42.3 45 0.00098 36.8 5.5 8 80-87 331-338 (574)
33 PRK13855 type IV secretion sys 40.7 41 0.0009 35.6 4.8 16 312-327 279-294 (376)
34 PHA03211 serine/threonine kina 39.2 40 0.00086 36.7 4.7 11 464-474 434-444 (461)
35 PF06570 DUF1129: Protein of u 39.2 3.6E+02 0.0077 25.9 12.0 22 189-210 181-202 (206)
36 KOG3837 Uncharacterized conser 38.6 40 0.00087 36.1 4.3 8 45-52 177-184 (523)
37 PRK13855 type IV secretion sys 35.6 73 0.0016 33.8 5.6 10 217-226 223-232 (376)
38 KOG2675 Adenylate cyclase-asso 34.3 56 0.0012 35.2 4.6 6 40-45 234-239 (480)
39 KOG4425 Uncharacterized conser 34.2 27 0.00059 37.8 2.3 6 374-379 512-517 (900)
40 KOG2927 Membrane component of 32.8 62 0.0014 33.9 4.5 26 141-166 198-223 (372)
41 PF12355 Dscam_C: Down syndrom 32.5 31 0.00067 30.0 1.9 7 40-46 61-67 (124)
42 KOG1785 Tyrosine kinase negati 32.4 78 0.0017 33.7 5.1 57 4-66 470-543 (563)
43 PRK14849 putative lipoprotein/ 30.7 35 0.00076 42.9 2.7 7 288-294 1603-1609(1806)
44 COG3147 DedD Uncharacterized p 30.1 1.2E+02 0.0027 29.7 5.7 7 106-112 176-182 (226)
45 PF07304 SRA1: Steroid recepto 29.5 18 0.00039 33.6 0.0 41 27-68 2-42 (157)
46 KOG1984 Vesicle coat complex C 28.9 83 0.0018 36.8 5.0 11 364-374 608-618 (1007)
47 PF06637 PV-1: PV-1 protein (P 28.2 65 0.0014 34.1 3.7 7 55-61 427-433 (442)
48 KOG1985 Vesicle coat complex C 26.6 1.2E+02 0.0027 35.2 5.8 6 479-484 732-737 (887)
49 KOG1922 Rho GTPase effector BN 26.4 88 0.0019 36.8 5.0 10 16-25 309-318 (833)
50 KOG1925 Rac1 GTPase effector F 24.9 65 0.0014 35.3 3.2 12 216-227 460-471 (817)
51 PF15324 TALPID3: Hedgehog sig 24.2 1.1E+02 0.0023 36.7 4.8 13 39-51 949-961 (1252)
52 KOG3294 WW domain binding prot 24.0 1.2E+02 0.0026 30.2 4.5 6 39-44 195-200 (261)
53 PF05399 EVI2A: Ectropic viral 23.0 4.3E+02 0.0093 25.9 7.9 18 69-86 118-135 (227)
54 PF10873 DUF2668: Protein of u 22.9 1.9E+02 0.0042 26.5 5.3 6 27-32 113-118 (155)
55 PF04625 DEC-1_N: DEC-1 protei 22.8 1.2E+02 0.0026 31.5 4.3 10 8-17 59-68 (407)
56 KOG4307 RNA binding protein RB 21.2 2.1E+02 0.0046 32.8 6.2 8 223-230 369-376 (944)
57 PF14017 DUF4233: Protein of u 20.6 5.7E+02 0.012 22.2 10.3 26 186-212 78-103 (107)
58 PF01698 FLO_LFY: Floricaula / 20.5 33 0.00073 36.2 0.0 8 277-284 262-269 (386)
59 TIGR02220 phg_TIGR02220 phage 20.3 71 0.0015 26.2 1.8 32 359-397 2-33 (77)
No 1
>KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism]
Probab=100.00 E-value=6.8e-65 Score=547.38 Aligned_cols=363 Identities=23% Similarity=0.436 Sum_probs=293.5
Q ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHHHH--HHHhcc-------CC------c-
Q 010493 121 EKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGIL--LICFQK-------PA------T- 184 (509)
Q Consensus 121 ~~~dl~~~~~~l~~~~~ls~vls~~~l~llr~~~~~~i~~~vw~~iil~~~~~i~--~~~~~~-------~~------~- 184 (509)
...|+..+|+++...++++++++++++.++|.+++ ..+|+.+++.+.+.++ +.|+.. +. .
T Consensus 141 i~~~i~~sw~~i~~~~~~~l~~s~i~~~~lr~~~~----~l~~~~~~~~l~~l~~~~~~~~~~y~~~~~~~~~i~~~~~~ 216 (577)
T KOG1362|consen 141 IFADILRSWYTILSLLGIALVLSLIFTKLLRFLAA----ILPWILIILVLVGLLSGIWFCWFLYAILRNTKVTIGFTSSL 216 (577)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccceeecchHH
Confidence 66788899999999999999999999999996666 4477777666554433 233211 10 0
Q ss_pred -----------hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 010493 185 -----------DGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIG 253 (509)
Q Consensus 185 -----------~~~~i~~~i~ai~~~ly~~~~r~RI~~ai~ilk~A~~~i~~~p~l~~~~~~~~~i~~~~~~~W~~~~iG 253 (509)
+..+++.+++.++.++|++++|+||+++++++|+|+|++.+.|+++++|..++++.++|+++|+...++
T Consensus 217 ~~~~~~~~~~l~~~~Iv~~v~~vv~~l~~i~lr~RI~~a~all~ea~k~i~~~p~~~~~p~~~~~v~~~~i~~wv~~~~~ 296 (577)
T KOG1362|consen 217 FVAVGNQLTLLDAVGIVLTVISVVLVLYIIFLRKRIPLAIALLKEATKAIGSLPSTLFPPALTFFVLLLFISLWVFVALF 296 (577)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 136788888888887888999999999999999999999999999999999999999999999988762
Q ss_pred c--cc--------ccCch----HHHHHHHHH-HHHHHHHHhhcccccccceEEEEeecCCC-----ccHHHHHHHHHhhh
Q 010493 254 A--LN--------FYFPP----LIIIALVLS-LAWTTEVMRNVVNLTVCRVISLYYILGMQ-----SSTQFCFQRALTQN 313 (509)
Q Consensus 254 ~--~~--------~~~~~----~~~~~~lf~-~~Wt~~~i~~v~~~tvAg~va~WYF~~~~-----~~v~~S~~ra~~~s 313 (509)
- .+ +.+++ .+++++++. ++|++||+.|++|+++||++++|||++++ .|+..|++|+++||
T Consensus 297 l~t~~~~~~gg~~~~~~~~~~~~~~~~~vv~~l~Wt~~fi~a~q~~vISgava~~Yf~~~~~~iP~~p~~~al~ra~~yh 376 (577)
T KOG1362|consen 297 LVTSGPNSEGGCACTYSGGSLRILFWLLVVGSLIWTSEFILALQQVVISGAVASWYFARDKQDIPSSPLFSALRRALRYH 376 (577)
T ss_pred HhhcccccCCCceeeccCCcchhHhHHHHHHHHHHHHHHHHHHHHHhhhhhhheeeEecCCCCCCCchHHHHHHHHHHHh
Confidence 2 11 22322 356667666 99999999999999999999999997443 68999999999999
Q ss_pred hhhHHhhhhHHHHHHHHHHHHHHhhh-ccCC----cchhHHHHHHHHHHHHHHHHhchhhHHHHHHhcCCchhHhHHHHH
Q 010493 314 LGSACLGSLFVPTIEALRIVARGLNL-LEGE----DEFMFSCAHCCLRIMESIFRCGNGWAYVQIAAYGKGFVQASQDTW 388 (509)
Q Consensus 314 fGSIc~GSLIvaii~~lR~i~~~l~~-~~~~----~~~l~~c~~C~l~~le~~i~~~N~~Ayi~vAi~G~~F~~Sak~a~ 388 (509)
+||+|+|||++++|+++|.++|++++ +++. .++++||+.||+||+|+++||+|||||+|+|||||+||+||||||
T Consensus 377 lGSi~~GSliv~iV~i~R~iL~~i~~~lk~~~~~~~~~~~~c~~Cc~w~le~~i~~lNrnAYi~iAiyGk~Fc~SAkda~ 456 (577)
T KOG1362|consen 377 LGSICFGSLLVALVRILRVILRYIRHKLKGSQNAAARILLMCLKCCFWCLEKFIKFLNRNAYVMIAIYGKNFCTSAKDAW 456 (577)
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhcCcchheeeeccCccchHHHHHHH
Confidence 99999999999999999999999986 4443 369999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCcceecccchHHHHHHHhHHHHHHHHHHHHHhhhccCCC--chhHHHHHHHHHH-HHHHHhhhhhHHHHHHHH
Q 010493 389 ALFERQEMEPIVDSDITSSICFLTGVCSGCICVIVTAAWTAKVHQP--FTATISLLTFIIG-YLMTRIAMALPQACVSCY 465 (509)
Q Consensus 389 ~L~~~n~~~alv~~~l~~~vlfL~~l~vg~i~~~~~~~~~~~~~~~--~~~~~~l~~~~i~-y~i~~~f~~v~~~~VdTi 465 (509)
+|++||..+....|.++++++|+|++++ ++++.++..|....++. +++.+.+++++++ |+|+++|++|++++|||+
T Consensus 457 ~ll~~Nv~~vv~~d~vs~~llflgk~l~-~~~~g~~g~~~l~~~~~~l~~y~V~lla~iig~ylIa~~f~~v~~m~Vdtl 535 (577)
T KOG1362|consen 457 ELLRRNVLRVVDVDLVSDFLLFLGKLLG-AIGSGVAGIWLLIGRKDVLYYYVVPLLAFIIGAYLIAHIFFSVLEMCVDTL 535 (577)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcceeEeHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999994444444446666667766654 45555554544444444 5566777888888 999999999999999999
Q ss_pred hHHhcccCCCCcccCCchhHHHH
Q 010493 466 YVCYAQNPDNRLFDSTIKDRLSL 488 (509)
Q Consensus 466 fvCyaeDpe~~~~~~~~p~~~~~ 488 (509)
|+||+||||.+..+.+.|+..+|
T Consensus 536 flCf~eD~e~n~gs~~~p~~~~~ 558 (577)
T KOG1362|consen 536 FLCFAEDPESNDGSPEKPQFMSE 558 (577)
T ss_pred hheeEecHhhcCCCCCcceeeeH
Confidence 99999999974444445553333
No 2
>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [].
Probab=100.00 E-value=2.1e-59 Score=483.24 Aligned_cols=288 Identities=26% Similarity=0.505 Sum_probs=257.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHhc-----cc-----c
Q 010493 188 GVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGA-----LN-----F 257 (509)
Q Consensus 188 ~i~~~i~ai~~~ly~~~~r~RI~~ai~ilk~A~~~i~~~p~l~~~~~~~~~i~~~~~~~W~~~~iG~-----~~-----~ 257 (509)
+++..+++++.++++++.||||++|++++|+|+++++++|+++++|+++.++.++|+++|+.+..+. .. .
T Consensus 3 ~ii~~i~~~i~~~~~~~~r~rI~~a~~vlk~A~~~l~~~p~l~~~p~~~~~~~~~~~~~w~~~~~~l~~~g~~~~~~~~~ 82 (334)
T PF04515_consen 3 AIIFLILALIIILFIIFLRKRIPFAIAVLKVASKALRSNPSLLLVPIITFIVQLVFFVLWIIVVLYLFSIGSPVINPCNL 82 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCC
Confidence 4556666666667778899999999999999999999999999999999999999999999887622 10 0
Q ss_pred ------------cCc---hHHHHHHHHHHHHHHHHHhhcccccccceEEEEeecCCC-----ccHHHHHHHHHhhhhhhH
Q 010493 258 ------------YFP---PLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQ-----SSTQFCFQRALTQNLGSA 317 (509)
Q Consensus 258 ------------~~~---~~~~~~~lf~~~Wt~~~i~~v~~~tvAg~va~WYF~~~~-----~~v~~S~~ra~~~sfGSI 317 (509)
+++ .++.+|++|+++|+++|++|++|+++||++++|||++++ .|+.+|++|+++|||||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~W~~~~i~~~~~~~vag~v~~WYF~~~~~~~~~~~~~~s~~~~~~~~~GSi 162 (334)
T PF04515_consen 83 PFSSGSISCCQFVFDSWSYWLIIYHLFSFFWTSQFILNVQQFTVAGVVAQWYFSRDKPNMPKSPVLRSLKRALTYHFGSI 162 (334)
T ss_pred CcccccccceeeecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecCCcccccchHHHHHHHHHHHHhHHHH
Confidence 112 257789999999999999999999999999999997543 689999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhccCC-----cchhHHHHHHHHHHHHHHHHhchhhHHHHHHhcCCchhHhHHHHHHHHh
Q 010493 318 CLGSLFVPTIEALRIVARGLNLLEGE-----DEFMFSCAHCCLRIMESIFRCGNGWAYVQIAAYGKGFVQASQDTWALFE 392 (509)
Q Consensus 318 c~GSLIvaii~~lR~i~~~l~~~~~~-----~~~l~~c~~C~l~~le~~i~~~N~~Ayi~vAi~G~~F~~Sak~a~~L~~ 392 (509)
|+|||++++++++|.+++++++..++ .+++.||++||++|+|+++||+|||||+|+||||++||+|||++++|++
T Consensus 163 ~~gSlivaiv~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~e~~l~~~n~~ayi~~ai~G~~F~~sak~~~~L~~ 242 (334)
T PF04515_consen 163 CFGSLIVAIVQFLRFLLRYLRRRAKKSQNKFVKFILCCLSCCLWCLEKFLEYINKYAYIYIAIYGKSFCESAKRAFELIK 242 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 99999999999999999999874443 3588999999999999999999999999999999999999999999999
Q ss_pred hcCCcceecccchHHHHHHHhHHHHHHHHHHHHHhhhc----cCCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHH
Q 010493 393 RQEMEPIVDSDITSSICFLTGVCSGCICVIVTAAWTAK----VHQPFTATISLLTFIIGYLMTRIAMALPQACVSCYYVC 468 (509)
Q Consensus 393 ~n~~~alv~~~l~~~vlfL~~l~vg~i~~~~~~~~~~~----~~~~~~~~~~l~~~~i~y~i~~~f~~v~~~~VdTifvC 468 (509)
||+.++..+|++++.++++++++++..++++++.+... .+.++...+++++++++|.++++|++++++++||+|+|
T Consensus 243 ~n~~~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~f~~v~~~~vdti~vc 322 (334)
T PF04515_consen 243 RNGLRAIIVDGLGSFVLFLGKLFISLLCGLIAYLILSNSSFKNDLSYPIVPALISFFIGYFISSIFMSVYSSAVDTIFVC 322 (334)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999989999999999999999999999998887763 35566778999999999999999999999999999999
Q ss_pred hcccCCC
Q 010493 469 YAQNPDN 475 (509)
Q Consensus 469 yaeDpe~ 475 (509)
|+||||.
T Consensus 323 ~~~d~e~ 329 (334)
T PF04515_consen 323 YAEDPEM 329 (334)
T ss_pred HHHHhhh
Confidence 9999995
No 3
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.15 E-value=0.00067 Score=75.13 Aligned_cols=22 Identities=9% Similarity=-0.026 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHhhhhhhcCc
Q 010493 207 QRIGFCCKVLIISLQPVSKFSD 228 (509)
Q Consensus 207 ~RI~~ai~ilk~A~~~i~~~p~ 228 (509)
+-|+=++.-..+||+=+++..+
T Consensus 795 nniKP~i~avt~ACEE~rkSes 816 (1102)
T KOG1924|consen 795 NNIKPDIVAVTAACEELRKSES 816 (1102)
T ss_pred hhcChHHHHHHHHHHHHHhhhh
Confidence 4455555555666666666433
No 4
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.72 E-value=0.0028 Score=70.44 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=9.5
Q ss_pred HHHHHHhcCCCCCCCCCCCcC
Q 010493 485 RLSLMKAGRDVVVPTPRVPHR 505 (509)
Q Consensus 485 ~~~~l~~~~~~~~~~~~~~~~ 505 (509)
+.+.|+++-..+.+.-|.|||
T Consensus 1046 lLeaLqsgaafr~rrk~~prq 1066 (1102)
T KOG1924|consen 1046 LLEALQSGAAFRTRRKRLPRQ 1066 (1102)
T ss_pred HHHHHHhhccccCcccccCCC
Confidence 555555554333333334433
No 5
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=93.61 E-value=0.082 Score=64.40 Aligned_cols=9 Identities=11% Similarity=0.312 Sum_probs=5.6
Q ss_pred cceEEEEee
Q 010493 287 CRVISLYYI 295 (509)
Q Consensus 287 Ag~va~WYF 295 (509)
.|+.++||.
T Consensus 1844 LGaYaTWy~ 1852 (2039)
T PRK15319 1844 LGVYATWFA 1852 (2039)
T ss_pred EEEEEEeec
Confidence 356667775
No 6
>PRK09752 adhesin; Provisional
Probab=89.59 E-value=0.32 Score=57.39 Aligned_cols=10 Identities=10% Similarity=0.192 Sum_probs=5.2
Q ss_pred cceEEEEeec
Q 010493 287 CRVISLYYIL 296 (509)
Q Consensus 287 Ag~va~WYF~ 296 (509)
.|+.++||-+
T Consensus 1063 vGlYaTWy~n 1072 (1250)
T PRK09752 1063 VGLTSSWFQH 1072 (1250)
T ss_pred eeeEEEEEec
Confidence 3455566653
No 7
>PHA03247 large tegument protein UL36; Provisional
Probab=88.50 E-value=0.84 Score=57.61 Aligned_cols=19 Identities=11% Similarity=0.106 Sum_probs=11.9
Q ss_pred hhhhHHHHHHHHHHHhhhh
Q 010493 205 VSQRIGFCCKVLIISLQPV 223 (509)
Q Consensus 205 ~r~RI~~ai~ilk~A~~~i 223 (509)
+++|++.+=..|..-++.+
T Consensus 3121 i~r~lr~TR~~L~~~~~~v 3139 (3151)
T PHA03247 3121 IRRQLRRTRHALLDRSGAV 3139 (3151)
T ss_pred HHHHHHHHHHHHHhhHHHH
Confidence 4677777776666555543
No 8
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.70 E-value=1.3 Score=45.88 Aligned_cols=42 Identities=24% Similarity=0.392 Sum_probs=16.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 010493 28 TPPPSQPSRQAPRIATPPPSQPSRPRSISTSPPAPTPTPQQASR 71 (509)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (509)
-|...+|.|.||.+.|||+.+-++|+ .+|+-++.+|||+++.
T Consensus 424 ~pt~~~PprPppqggppP~g~~~~p~--~~~hl~~~gppq~prt 465 (488)
T KOG3895|consen 424 SPTRRLPPRPPPQGGPPPRGHMSDPV--GSRHLDHDGPPQIPRT 465 (488)
T ss_pred CCCCCCCCCCCCCCCCCCccccCCcc--ccccCCCCCCCCCCCC
Confidence 34444444444444444433322221 2344444444444443
No 9
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=84.23 E-value=0.74 Score=53.87 Aligned_cols=9 Identities=0% Similarity=0.220 Sum_probs=3.7
Q ss_pred hhhhhcCcc
Q 010493 221 QPVSKFSDL 229 (509)
Q Consensus 221 ~~i~~~p~l 229 (509)
+.+.++|++
T Consensus 234 r~led~p~v 242 (2365)
T COG5178 234 RDLEDHPSV 242 (2365)
T ss_pred cccccCCcc
Confidence 334334444
No 10
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=83.14 E-value=0.9 Score=53.21 Aligned_cols=8 Identities=25% Similarity=0.293 Sum_probs=3.2
Q ss_pred HHHHHHch
Q 010493 147 QKAVRVWP 154 (509)
Q Consensus 147 l~llr~~~ 154 (509)
+.||-+.|
T Consensus 123 lkLLeNmP 130 (2365)
T COG5178 123 LKLLENMP 130 (2365)
T ss_pred HHHHhcCC
Confidence 34444333
No 11
>PF05750 Rubella_Capsid: Rubella capsid protein; InterPro: IPR008819 Rubella virus is an enveloped positive-strand RNA virus of the family Togaviridae. Virions are composed of three structural proteins: a capsid and two membrane-spanning glycoproteins, E2 and E1. During virus assembly, the capsid interacts with genomic RNA to form nucleocapsids. It has been discovered that capsid phosphorylation serves to negatively regulate binding of viral genomic RNA. This may delay the initiation of nucleocapsid assembly until sufficient amounts of virus glycoproteins accumulate at the budding site and/or prevent non-specific binding to cellular RNA when levels of genomic RNA are low. It follows that at a late stage in replication, the capsid may undergo dephosphorylation before nucleocapsid assembly occurs []. This family is found together with IPR008820 from INTERPRO and IPR008821 from INTERPRO.; GO: 0016021 integral to membrane, 0019013 viral nucleocapsid
Probab=78.97 E-value=1.9 Score=40.71 Aligned_cols=40 Identities=35% Similarity=0.588 Sum_probs=20.1
Q ss_pred CCCCCCCCCCCCCCCCC---CCCCCCCCCC------CCCCCCCCCCCCC
Q 010493 28 TPPPSQPSRQAPRIATP---PPSQPSRPRS------ISTSPPAPTPTPQ 67 (509)
Q Consensus 28 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~------~~~~~~~~~~~~~ 67 (509)
||..-|.||+..+.+.| ||++|.||+- +.|+|+--||.++
T Consensus 80 ppeerqesrsqtpapkpsrappqqpqpprmqtgrggsaprpelgpptnp 128 (300)
T PF05750_consen 80 PPEERQESRSQTPAPKPSRAPPQQPQPPRMQTGRGGSAPRPELGPPTNP 128 (300)
T ss_pred ChhhhhhhhccCCCCCCCCCCcCCCCCcccccCCCCCCCCcccCCCCCh
Confidence 44445555544443333 4444444422 4566776666666
No 12
>PRK15313 autotransport protein MisL; Provisional
Probab=77.01 E-value=3.7 Score=47.88 Aligned_cols=9 Identities=11% Similarity=0.383 Sum_probs=4.8
Q ss_pred cceEEEEee
Q 010493 287 CRVISLYYI 295 (509)
Q Consensus 287 Ag~va~WYF 295 (509)
.|+.++||-
T Consensus 756 lG~YaTWy~ 764 (955)
T PRK15313 756 VGLYGTWYA 764 (955)
T ss_pred eEeEEEEec
Confidence 455555654
No 13
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=71.46 E-value=4.7 Score=43.66 Aligned_cols=35 Identities=29% Similarity=0.612 Sum_probs=16.4
Q ss_pred CCCCCCCCCCCCCC--CCCCCCCCCCCC--CCCCCCCCC
Q 010493 23 APRIATPPPSQPSR--QAPRIATPPPSQ--PSRPRSIST 57 (509)
Q Consensus 23 ~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~ 57 (509)
-|+++|||...|.| --++.|||||-- |||||++.+
T Consensus 229 ~P~~P~~P~~~P~~~~L~~GvPPPPP~G~~PPPPP~~~~ 267 (817)
T KOG1925|consen 229 EPLIPASPKELPTRDFLLSGVPPPPPKGPFPPPPPLAAP 267 (817)
T ss_pred CCCCCCChhccCCchhhhcCCCCCCCCCCCCCCCCCccc
Confidence 45544555544433 234555555432 555555544
No 14
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=70.31 E-value=5.4 Score=37.62 Aligned_cols=7 Identities=43% Similarity=0.681 Sum_probs=2.8
Q ss_pred CCCCCCC
Q 010493 32 SQPSRQA 38 (509)
Q Consensus 32 ~~~~~~~ 38 (509)
.|++.++
T Consensus 173 ~~~~a~~ 179 (225)
T KOG3397|consen 173 AQPSASS 179 (225)
T ss_pred CCccccc
Confidence 3444333
No 15
>PTZ00449 104 kDa microneme/rhoptry antigen; Provisional
Probab=67.00 E-value=11 Score=41.30 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=13.2
Q ss_pred CCCCCCCCCCCCCCCCCCCC-CCCCCCCC
Q 010493 38 APRIATPPPSQPSRPRSIST-SPPAPTPT 65 (509)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 65 (509)
+|.+|++|-.|++|.++++| .|++|.+|
T Consensus 632 sPKsP~sPqrP~SPkRPEsPKiPesPK~P 660 (943)
T PTZ00449 632 SPKRPPPPQRPSSPERPEGPKIIKSPKPP 660 (943)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 34444444444455555555 44444433
No 16
>PHA03211 serine/threonine kinase US3; Provisional
Probab=66.57 E-value=5.3 Score=43.52 Aligned_cols=8 Identities=0% Similarity=0.156 Sum_probs=3.9
Q ss_pred ccchHHHH
Q 010493 80 TNKISLFL 87 (509)
Q Consensus 80 ~d~~~~~l 87 (509)
-.++|...
T Consensus 65 ~~~~~~~~ 72 (461)
T PHA03211 65 AARLCQIQ 72 (461)
T ss_pred HHHHHHHH
Confidence 34456544
No 17
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.65 E-value=13 Score=38.58 Aligned_cols=15 Identities=33% Similarity=0.751 Sum_probs=7.8
Q ss_pred CCCCCCCCCCCCCCC
Q 010493 55 ISTSPPAPTPTPQQA 69 (509)
Q Consensus 55 ~~~~~~~~~~~~~~~ 69 (509)
+++-||.|+|+|++.
T Consensus 168 ~~~~~p~p~p~~~~g 182 (365)
T KOG2391|consen 168 SAYKPPLPPPPPPGG 182 (365)
T ss_pred cCcCCCCCCCCCCCc
Confidence 344555555555544
No 18
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=64.17 E-value=6.9 Score=36.92 Aligned_cols=13 Identities=15% Similarity=0.309 Sum_probs=5.0
Q ss_pred CCCCCCCCCCCCC
Q 010493 28 TPPPSQPSRQAPR 40 (509)
Q Consensus 28 ~~~~~~~~~~~~~ 40 (509)
|.+.+|...+.|.
T Consensus 173 ~~~~a~~~~~~~~ 185 (225)
T KOG3397|consen 173 AQPSASSTVSASA 185 (225)
T ss_pred CCcccccccCCCC
Confidence 3334443333333
No 19
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.04 E-value=14 Score=38.34 Aligned_cols=16 Identities=31% Similarity=0.490 Sum_probs=7.1
Q ss_pred CCCCCCCCCCCCCCCC
Q 010493 38 APRIATPPPSQPSRPR 53 (509)
Q Consensus 38 ~~~~~~~~~~~~~~~~ 53 (509)
++++...||.||||++
T Consensus 165 p~~~~~~~p~p~p~~~ 180 (365)
T KOG2391|consen 165 PKGSAYKPPLPPPPPP 180 (365)
T ss_pred CCCcCcCCCCCCCCCC
Confidence 3444444554444443
No 20
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.57 E-value=26 Score=39.80 Aligned_cols=8 Identities=0% Similarity=0.443 Sum_probs=3.3
Q ss_pred CeeEEEeC
Q 010493 10 PLRIVING 17 (509)
Q Consensus 10 ~~~~~~~~ 17 (509)
+.+|....
T Consensus 505 ~~~~~~~~ 512 (620)
T PRK14948 505 SIKLNLES 512 (620)
T ss_pred CeEEEEEe
Confidence 34444433
No 21
>COG5373 Predicted membrane protein [Function unknown]
Probab=53.22 E-value=22 Score=41.06 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=7.1
Q ss_pred CCCCCCCCCCCCC
Q 010493 36 RQAPRIATPPPSQ 48 (509)
Q Consensus 36 ~~~~~~~~~~~~~ 48 (509)
+.+++.+||||||
T Consensus 71 ~~A~~ev~~p~~~ 83 (931)
T COG5373 71 SIASPEVPPPVPP 83 (931)
T ss_pred cccCcCCCCCCCC
Confidence 3355666666544
No 22
>PF10110 GPDPase_memb: Membrane domain of glycerophosphoryl diester phosphodiesterase; InterPro: IPR018476 Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase [].
Probab=51.00 E-value=50 Score=30.03 Aligned_cols=32 Identities=19% Similarity=0.246 Sum_probs=27.3
Q ss_pred hhHHHHHHhcCCchhHhHHHHHHHHhhcCCcc
Q 010493 367 GWAYVQIAAYGKGFVQASQDTWALFERQEMEP 398 (509)
Q Consensus 367 ~~Ayi~vAi~G~~F~~Sak~a~~L~~~n~~~a 398 (509)
-++.-.+.+.++++.+|-|++|++.|+|.++.
T Consensus 104 if~lp~~vle~~~~~~A~k~Sw~ltk~~~~~~ 135 (149)
T PF10110_consen 104 IFVLPLIVLENKSFKEALKESWQLTKGRFWRI 135 (149)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHcCcHHHH
Confidence 45677789999999999999999999977643
No 23
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.76 E-value=29 Score=37.82 Aligned_cols=12 Identities=33% Similarity=0.576 Sum_probs=8.2
Q ss_pred CCCCCCCCCCCC
Q 010493 28 TPPPSQPSRQAP 39 (509)
Q Consensus 28 ~~~~~~~~~~~~ 39 (509)
|||..|++|+-+
T Consensus 492 ppPrpq~sHsrs 503 (737)
T KOG1955|consen 492 PPPRPQSSHSRS 503 (737)
T ss_pred CCCCCccccccc
Confidence 777777777543
No 24
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=48.59 E-value=21 Score=37.22 Aligned_cols=7 Identities=43% Similarity=0.667 Sum_probs=2.7
Q ss_pred CCCCeeE
Q 010493 7 PTNPLRI 13 (509)
Q Consensus 7 ~~~~~~~ 13 (509)
|.-|+|+
T Consensus 244 P~~~~Q~ 250 (498)
T KOG4849|consen 244 PQMRLQI 250 (498)
T ss_pred cccCcCc
Confidence 3333443
No 25
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=48.35 E-value=25 Score=42.43 Aligned_cols=11 Identities=45% Similarity=0.773 Sum_probs=4.4
Q ss_pred CCCCCCCCCCC
Q 010493 41 IATPPPSQPSR 51 (509)
Q Consensus 41 ~~~~~~~~~~~ 51 (509)
+-|+||.||.|
T Consensus 1904 ~gpqPp~~p~p 1914 (1958)
T KOG0391|consen 1904 QGPQPPQQPSP 1914 (1958)
T ss_pred CCCCCCCCCCC
Confidence 33334434443
No 26
>KOG4090 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.19 E-value=42 Score=30.96 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=5.7
Q ss_pred CCCCCCCCCCCCC
Q 010493 32 SQPSRQAPRIATP 44 (509)
Q Consensus 32 ~~~~~~~~~~~~~ 44 (509)
..++|.++..+-|
T Consensus 16 p~~arap~~~aap 28 (157)
T KOG4090|consen 16 PAAARAPSPAAAP 28 (157)
T ss_pred CccccCCCcccCC
Confidence 3444444444434
No 27
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=45.94 E-value=29 Score=35.99 Aligned_cols=7 Identities=29% Similarity=0.297 Sum_probs=2.9
Q ss_pred CCCCCCC
Q 010493 53 RSISTSP 59 (509)
Q Consensus 53 ~~~~~~~ 59 (509)
+.++++|
T Consensus 43 ~~~~~~P 49 (362)
T KOG1546|consen 43 PSSYPNP 49 (362)
T ss_pred CCCCCCC
Confidence 3344444
No 28
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=45.46 E-value=50 Score=38.77 Aligned_cols=13 Identities=15% Similarity=0.401 Sum_probs=6.3
Q ss_pred CCchhHhHHHHHH
Q 010493 377 GKGFVQASQDTWA 389 (509)
Q Consensus 377 G~~F~~Sak~a~~ 389 (509)
|..|+++.++-.+
T Consensus 716 ~~~f~~~~~~fl~ 728 (833)
T KOG1922|consen 716 GDPFSKVKKEFLS 728 (833)
T ss_pred cchhhhhhhhhhh
Confidence 4455555554433
No 29
>PTZ00449 104 kDa microneme/rhoptry antigen; Provisional
Probab=44.76 E-value=50 Score=36.44 Aligned_cols=10 Identities=30% Similarity=0.411 Sum_probs=4.4
Q ss_pred CCCCCCCCCC
Q 010493 48 QPSRPRSIST 57 (509)
Q Consensus 48 ~~~~~~~~~~ 57 (509)
|++|+++++|
T Consensus 636 P~sPqrP~SP 645 (943)
T PTZ00449 636 PPPPQRPSSP 645 (943)
T ss_pred CCCCCCCCCC
Confidence 3444444444
No 30
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=44.49 E-value=58 Score=32.95 Aligned_cols=13 Identities=23% Similarity=0.457 Sum_probs=6.2
Q ss_pred eEEEeCcccccCC
Q 010493 12 RIVINGGRRVTAP 24 (509)
Q Consensus 12 ~~~~~~~~~~~~~ 24 (509)
.|++....-...|
T Consensus 132 e~~irkkeal~~~ 144 (274)
T PLN02983 132 ELVIRKKEALPQP 144 (274)
T ss_pred EEEEecccccCCC
Confidence 3455545444443
No 31
>KOG1945 consensus Protein phosphatase 1 binding protein spinophilin/neurabin II [Signal transduction mechanisms]
Probab=44.25 E-value=16 Score=38.11 Aligned_cols=9 Identities=44% Similarity=0.851 Sum_probs=4.4
Q ss_pred CCCCCCCCC
Q 010493 55 ISTSPPAPT 63 (509)
Q Consensus 55 ~~~~~~~~~ 63 (509)
.++.|+.|-
T Consensus 53 ~~~~~~~~~ 61 (377)
T KOG1945|consen 53 PSQCPPSPM 61 (377)
T ss_pred cccCCCcch
Confidence 355555444
No 32
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=42.28 E-value=45 Score=36.81 Aligned_cols=8 Identities=38% Similarity=0.351 Sum_probs=3.2
Q ss_pred ccchHHHH
Q 010493 80 TNKISLFL 87 (509)
Q Consensus 80 ~d~~~~~l 87 (509)
-+.+..|+
T Consensus 331 d~vi~~p~ 338 (574)
T PF07462_consen 331 DKVIALPL 338 (574)
T ss_pred cceeeccC
Confidence 33334444
No 33
>PRK13855 type IV secretion system protein VirB10; Provisional
Probab=40.72 E-value=41 Score=35.58 Aligned_cols=16 Identities=6% Similarity=0.301 Sum_probs=7.1
Q ss_pred hhhhhHHhhhhHHHHH
Q 010493 312 QNLGSACLGSLFVPTI 327 (509)
Q Consensus 312 ~sfGSIc~GSLIvaii 327 (509)
.||+..-=|+++++++
T Consensus 279 nHf~~rFGsAlLlS~I 294 (376)
T PRK13855 279 NHFWQRFSGAMLLSVV 294 (376)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 34
>PHA03211 serine/threonine kinase US3; Provisional
Probab=39.25 E-value=40 Score=36.73 Aligned_cols=11 Identities=0% Similarity=-0.188 Sum_probs=4.7
Q ss_pred HHhHHhcccCC
Q 010493 464 CYYVCYAQNPD 474 (509)
Q Consensus 464 TifvCyaeDpe 474 (509)
-+--|...||+
T Consensus 434 li~~mL~~DP~ 444 (461)
T PHA03211 434 LVCRALTFDGA 444 (461)
T ss_pred HHHHHcccChh
Confidence 33334444444
No 35
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=39.15 E-value=3.6e+02 Score=25.89 Aligned_cols=22 Identities=5% Similarity=0.117 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHH
Q 010493 189 VCFIAFAIGNGLYACWVSQRIG 210 (509)
Q Consensus 189 i~~~i~ai~~~ly~~~~r~RI~ 210 (509)
++.++++++.+....+++||-+
T Consensus 181 ~~~iiig~i~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 181 WVYIIIGVIAFALRFYLKKKYN 202 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3344455444333345667643
No 36
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=38.64 E-value=40 Score=36.11 Aligned_cols=8 Identities=50% Similarity=0.725 Sum_probs=3.4
Q ss_pred CCCCCCCC
Q 010493 45 PPSQPSRP 52 (509)
Q Consensus 45 ~~~~~~~~ 52 (509)
+|++||++
T Consensus 177 l~~~Ppaq 184 (523)
T KOG3837|consen 177 LPSQPPAQ 184 (523)
T ss_pred CCCCCCCC
Confidence 43344444
No 37
>PRK13855 type IV secretion system protein VirB10; Provisional
Probab=35.64 E-value=73 Score=33.77 Aligned_cols=10 Identities=10% Similarity=-0.094 Sum_probs=4.0
Q ss_pred HHHhhhhhhc
Q 010493 217 IISLQPVSKF 226 (509)
Q Consensus 217 k~A~~~i~~~ 226 (509)
...++.+.++
T Consensus 223 PkGS~liG~Y 232 (376)
T PRK13855 223 DRGTTVVGEI 232 (376)
T ss_pred cccCEEEEEe
Confidence 3344444443
No 38
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=34.28 E-value=56 Score=35.16 Aligned_cols=6 Identities=33% Similarity=0.767 Sum_probs=2.2
Q ss_pred CCCCCC
Q 010493 40 RIATPP 45 (509)
Q Consensus 40 ~~~~~~ 45 (509)
+.||||
T Consensus 234 g~PPPP 239 (480)
T KOG2675|consen 234 GAPPPP 239 (480)
T ss_pred CCCCCC
Confidence 333333
No 39
>KOG4425 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.21 E-value=27 Score=37.81 Aligned_cols=6 Identities=33% Similarity=0.440 Sum_probs=2.4
Q ss_pred HhcCCc
Q 010493 374 AAYGKG 379 (509)
Q Consensus 374 Ai~G~~ 379 (509)
.|.|+.
T Consensus 512 ~i~~kk 517 (900)
T KOG4425|consen 512 EILGKK 517 (900)
T ss_pred hhcccc
Confidence 344443
No 40
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.75 E-value=62 Score=33.92 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHchhhhHHHHHHHHH
Q 010493 141 SLSFSWQKAVRVWPKFMVHFILWSSF 166 (509)
Q Consensus 141 vls~~~l~llr~~~~~~i~~~vw~~i 166 (509)
++..+-+.|++.||+.|=..+.++++
T Consensus 198 vl~tlaivLFPLWP~~mR~gvyY~si 223 (372)
T KOG2927|consen 198 VLVTLAIVLFPLWPRRMRQGVYYLSI 223 (372)
T ss_pred HHHHHHHHhcccCcHHHhcceeeeec
Confidence 55555677888889887544433333
No 41
>PF12355 Dscam_C: Down syndrome cell adhesion molecule C terminal ; InterPro: IPR021012 This entry is specific to the insecta, predominantly Drosophila spp. This entry is found in association with PF00047 from PFAM, PF07679 from PFAM and PF00041 from PFAM. The Down syndrome cell adhesion molecule (Dscam) belongs to a family of cell membrane molecules involved in the differentiation of the nervous system. This is the C-terminal cytoplasmic tail region of Dscam. In Drosophila melanogaster (Fruit fly) the gene has at least 59 different transcripts. Dscam may play a role in the nervous and immune systems [].
Probab=32.50 E-value=31 Score=29.97 Aligned_cols=7 Identities=43% Similarity=0.961 Sum_probs=3.0
Q ss_pred CCCCCCC
Q 010493 40 RIATPPP 46 (509)
Q Consensus 40 ~~~~~~~ 46 (509)
++|.|||
T Consensus 61 gSPePPp 67 (124)
T PF12355_consen 61 GSPEPPP 67 (124)
T ss_pred CCCCCCC
Confidence 3444443
No 42
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=32.35 E-value=78 Score=33.71 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=0.0
Q ss_pred cCCCCCCeeEEEeCcccccCCCCCCCCCC-----CCCCCCCCCCCC------------CCCCCCCCCCCCCCCCCCCCCC
Q 010493 4 TLNPTNPLRIVINGGRRVTAPRIATPPPS-----QPSRQAPRIATP------------PPSQPSRPRSISTSPPAPTPTP 66 (509)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 66 (509)
+-++..++...-- ++|.-||..- .++++++.+-++ |++.|++++...|.|+++-|++
T Consensus 470 ~~p~~p~~~~~pl------s~PPlPPr~dl~~~~l~~~~~s~~~~~~k~l~~v~~~g~~lp~~~~~qr~PpppaP~rpp~ 543 (563)
T KOG1785|consen 470 ASPSIPSVDEPPL------SLPPLPPRLDLTLDTLNSSQTSSSGVNIKELENVETSGKPLPAPPNPQRDPPPPAPPRPPR 543 (563)
T ss_pred ccCCCCccccCCC------CCCCCCCCccccccccCCCCCCCCCcchhhhhcccccCCCCCCCCCcccCCCCCCCCCCCC
No 43
>PRK14849 putative lipoprotein/autotransporter domain-containing protein; Provisional
Probab=30.70 E-value=35 Score=42.92 Aligned_cols=7 Identities=14% Similarity=0.562 Sum_probs=3.2
Q ss_pred ceEEEEe
Q 010493 288 RVISLYY 294 (509)
Q Consensus 288 g~va~WY 294 (509)
|+.++||
T Consensus 1603 G~YaTWy 1609 (1806)
T PRK14849 1603 GLYATWY 1609 (1806)
T ss_pred EEEEEEE
Confidence 4444444
No 44
>COG3147 DedD Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.12 E-value=1.2e+02 Score=29.65 Aligned_cols=7 Identities=29% Similarity=0.434 Sum_probs=3.0
Q ss_pred ccccccc
Q 010493 106 GIQGLIL 112 (509)
Q Consensus 106 ~i~~~~~ 112 (509)
|++..+.
T Consensus 176 G~~ayi~ 182 (226)
T COG3147 176 GYRAYIE 182 (226)
T ss_pred CCceeec
Confidence 4444443
No 45
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=29.52 E-value=18 Score=33.64 Aligned_cols=41 Identities=41% Similarity=0.742 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010493 27 ATPPPSQPSRQAPRIATPPPSQPSRPRSISTSPPAPTPTPQQ 68 (509)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (509)
.|||.+.|..+.++ +||+++.+.||+.....+...+|..++
T Consensus 2 ~Ppp~~~P~s~~~~-~Pp~~~~~~PP~~~~~~~~~~~p~~~~ 42 (157)
T PF07304_consen 2 TPPPPSLPPSQAPP-PPPQPSGPVPPASPPVDPSSIPPEDEQ 42 (157)
T ss_dssp ------------------------------------------
T ss_pred CcCcCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCcchhh
No 46
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.86 E-value=83 Score=36.82 Aligned_cols=11 Identities=36% Similarity=0.308 Sum_probs=6.3
Q ss_pred hchhhHHHHHH
Q 010493 364 CGNGWAYVQIA 374 (509)
Q Consensus 364 ~~N~~Ayi~vA 374 (509)
|+..+|||=+|
T Consensus 608 F~t~~ayvDvA 618 (1007)
T KOG1984|consen 608 FLTPNAYVDVA 618 (1007)
T ss_pred EEcccceeeee
Confidence 45556666554
No 47
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=28.22 E-value=65 Score=34.10 Aligned_cols=7 Identities=43% Similarity=0.695 Sum_probs=3.2
Q ss_pred CCCCCCC
Q 010493 55 ISTSPPA 61 (509)
Q Consensus 55 ~~~~~~~ 61 (509)
++++||.
T Consensus 427 esqr~~~ 433 (442)
T PF06637_consen 427 ESQRPPV 433 (442)
T ss_pred hccCCCC
Confidence 4454443
No 48
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.61 E-value=1.2e+02 Score=35.24 Aligned_cols=6 Identities=0% Similarity=-0.180 Sum_probs=2.8
Q ss_pred cCCchh
Q 010493 479 DSTIKD 484 (509)
Q Consensus 479 ~~~~p~ 484 (509)
...+|+
T Consensus 732 k~IYP~ 737 (887)
T KOG1985|consen 732 KYIYPT 737 (887)
T ss_pred hhhccc
Confidence 334555
No 49
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=26.36 E-value=88 Score=36.76 Aligned_cols=10 Identities=30% Similarity=0.235 Sum_probs=4.5
Q ss_pred eCcccccCCC
Q 010493 16 NGGRRVTAPR 25 (509)
Q Consensus 16 ~~~~~~~~~~ 25 (509)
+.+.+...|+
T Consensus 309 ~~~~~~~~~~ 318 (833)
T KOG1922|consen 309 NFLQRESPPP 318 (833)
T ss_pred ccCccccCCC
Confidence 3444444443
No 50
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=24.89 E-value=65 Score=35.30 Aligned_cols=12 Identities=8% Similarity=0.313 Sum_probs=5.0
Q ss_pred HHHHhhhhhhcC
Q 010493 216 LIISLQPVSKFS 227 (509)
Q Consensus 216 lk~A~~~i~~~p 227 (509)
+|++.+-+.++.
T Consensus 460 lk~gm~qlE~n~ 471 (817)
T KOG1925|consen 460 LKVGMEQLEQNA 471 (817)
T ss_pred HHHHHHHHHhcc
Confidence 344444444433
No 51
>PF15324 TALPID3: Hedgehog signalling target
Probab=24.21 E-value=1.1e+02 Score=36.70 Aligned_cols=13 Identities=46% Similarity=0.667 Sum_probs=6.0
Q ss_pred CCCCCCCCCCCCC
Q 010493 39 PRIATPPPSQPSR 51 (509)
Q Consensus 39 ~~~~~~~~~~~~~ 51 (509)
+++++||+||++|
T Consensus 949 TPqpTPP~SP~s~ 961 (1252)
T PF15324_consen 949 TPQPTPPQSPPSP 961 (1252)
T ss_pred CCCCCCCCCCCCc
Confidence 3445555554333
No 52
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms]
Probab=24.04 E-value=1.2e+02 Score=30.22 Aligned_cols=6 Identities=17% Similarity=0.202 Sum_probs=2.2
Q ss_pred CCCCCC
Q 010493 39 PRIATP 44 (509)
Q Consensus 39 ~~~~~~ 44 (509)
.+...|
T Consensus 195 ~G~~qp 200 (261)
T KOG3294|consen 195 MGYVQP 200 (261)
T ss_pred ccccCC
Confidence 333333
No 53
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=22.98 E-value=4.3e+02 Score=25.91 Aligned_cols=18 Identities=22% Similarity=0.150 Sum_probs=10.2
Q ss_pred CcccccccCCcccchHHH
Q 010493 69 ASRTALNSKKYTNKISLF 86 (509)
Q Consensus 69 ~~~~~~~s~~~~d~~~~~ 86 (509)
+..|.-+..|.--.+|++
T Consensus 118 k~~CEen~~K~amLIClI 135 (227)
T PF05399_consen 118 KEICEENNNKMAMLICLI 135 (227)
T ss_pred hhhhhcCccchhHHHHHH
Confidence 344555555666666666
No 54
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=22.86 E-value=1.9e+02 Score=26.55 Aligned_cols=6 Identities=67% Similarity=0.932 Sum_probs=2.5
Q ss_pred CCCCCC
Q 010493 27 ATPPPS 32 (509)
Q Consensus 27 ~~~~~~ 32 (509)
+|||-+
T Consensus 113 apPpys 118 (155)
T PF10873_consen 113 APPPYS 118 (155)
T ss_pred CCCCcc
Confidence 444433
No 55
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=22.78 E-value=1.2e+02 Score=31.47 Aligned_cols=10 Identities=50% Similarity=0.853 Sum_probs=4.6
Q ss_pred CCCeeEEEeC
Q 010493 8 TNPLRIVING 17 (509)
Q Consensus 8 ~~~~~~~~~~ 17 (509)
+||+--.+|+
T Consensus 59 p~p~~~~mN~ 68 (407)
T PF04625_consen 59 PNPLGQAMNG 68 (407)
T ss_pred CCCcchhccc
Confidence 4555444443
No 56
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=21.20 E-value=2.1e+02 Score=32.79 Aligned_cols=8 Identities=0% Similarity=0.015 Sum_probs=3.8
Q ss_pred hhhcCcch
Q 010493 223 VSKFSDLN 230 (509)
Q Consensus 223 i~~~p~l~ 230 (509)
+.+++++.
T Consensus 369 ~~rn~~~~ 376 (944)
T KOG4307|consen 369 FTRNPSDD 376 (944)
T ss_pred HhcCchhh
Confidence 44455443
No 57
>PF14017 DUF4233: Protein of unknown function (DUF4233)
Probab=20.65 E-value=5.7e+02 Score=22.22 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 010493 186 GVGVCFIAFAIGNGLYACWVSQRIGFC 212 (509)
Q Consensus 186 ~~~i~~~i~ai~~~ly~~~~r~RI~~a 212 (509)
..+++.++|+..+ .|..+.|+||+.-
T Consensus 78 ~m~vvG~iF~~~W-~~~l~lg~~i~~~ 103 (107)
T PF14017_consen 78 AMFVVGVIFAAVW-WYALYLGRRIDRR 103 (107)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 4566667777776 6777788888754
No 58
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=20.52 E-value=33 Score=36.24 Aligned_cols=8 Identities=25% Similarity=0.405 Sum_probs=4.0
Q ss_pred HHhhcccc
Q 010493 277 VMRNVVNL 284 (509)
Q Consensus 277 ~i~~v~~~ 284 (509)
|+..||++
T Consensus 262 FL~qVQ~i 269 (386)
T PF01698_consen 262 FLIQVQNI 269 (386)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 59
>TIGR02220 phg_TIGR02220 phage conserved hypothetical protein, C-terminal domain. This model represents the conserved C-terminal domain of a family of proteins found exclusively in bacteriophage and in bacterial prophage regions. The functions of this domain and the proteins containing it are unknown.
Probab=20.27 E-value=71 Score=26.17 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=27.1
Q ss_pred HHHHHhchhhHHHHHHhcCCchhHhHHHHHHHHhhcCCc
Q 010493 359 ESIFRCGNGWAYVQIAAYGKGFVQASQDTWALFERQEME 397 (509)
Q Consensus 359 e~~i~~~N~~Ayi~vAi~G~~F~~Sak~a~~L~~~n~~~ 397 (509)
+.+++|+|+.+ |++|-.+++.+..+++.|--+
T Consensus 2 ~eii~yLN~kt-------g~~y~~~~k~~~~lI~aR~~e 33 (77)
T TIGR02220 2 KEIIEYLNEKA-------GKSFKHTTAKHKKLIKARWNE 33 (77)
T ss_pred hHHHHHHHHhc-------CcccccccHhHHHHHHHHHHc
Confidence 56889999976 999999999999999986544
Done!