Query 010493
Match_columns 509
No_of_seqs 206 out of 634
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 07:59:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010493.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010493hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jer_A Cucumber stellacyanin; 74.8 0.71 2.4E-05 40.7 0.5 16 51-66 122-137 (138)
2 2kxc_B ESPF-like protein; IRTK 33.9 26 0.00088 24.9 2.4 8 38-45 29-36 (48)
3 2h8h_A Proto-oncogene tyrosine 24.7 15 0.00053 38.7 -0.0 39 457-498 489-527 (535)
4 1jer_A Cucumber stellacyanin; 24.3 22 0.00076 31.0 0.9 7 6-12 62-68 (138)
5 2h6f_A Protein farnesyltransfe 23.3 20 0.00067 36.3 0.4 13 209-221 148-160 (382)
6 1uk5_A BAG-family molecular ch 18.3 76 0.0026 26.7 2.9 26 38-63 2-27 (111)
7 2rqw_B 24-meric peptide from s 17.7 74 0.0025 19.6 2.0 15 38-52 10-24 (26)
8 3h0g_A DNA-directed RNA polyme 17.5 27 0.00093 42.7 0.0 62 6-67 1600-1661(1752)
9 2h8h_A Proto-oncogene tyrosine 17.3 28 0.00095 36.7 0.0 60 19-78 8-67 (535)
10 2dvj_A V-CRK sarcoma virus CT1 16.3 1.5E+02 0.005 27.5 4.9 37 27-63 194-230 (230)
No 1
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=74.81 E-value=0.71 Score=40.73 Aligned_cols=16 Identities=38% Similarity=0.841 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCC
Q 010493 51 RPRSISTSPPAPTPTP 66 (509)
Q Consensus 51 ~~~~~~~~~~~~~~~~ 66 (509)
|++..++.|.||||+|
T Consensus 122 p~~~~~~~~~~~~~~~ 137 (138)
T 1jer_A 122 PPSSVMPPPVMPPPSP 137 (138)
T ss_dssp ----------------
T ss_pred CCCCCCCCCCCCCCCC
Confidence 3344455666666554
No 2
>2kxc_B ESPF-like protein; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Escherichia coli}
Probab=33.87 E-value=26 Score=24.87 Aligned_cols=8 Identities=25% Similarity=0.368 Sum_probs=3.3
Q ss_pred CCCCCCCC
Q 010493 38 APRIATPP 45 (509)
Q Consensus 38 ~~~~~~~~ 45 (509)
++|.++||
T Consensus 29 p~rPa~P~ 36 (48)
T 2kxc_B 29 PPAPNWPA 36 (48)
T ss_pred CCCCCCCC
Confidence 33444444
No 3
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=24.66 E-value=15 Score=38.71 Aligned_cols=39 Identities=13% Similarity=0.286 Sum_probs=27.5
Q ss_pred hHHHHHHHHhHHhcccCCCCcccCCchhHHHHHHhcCCCCCC
Q 010493 457 LPQACVSCYYVCYAQNPDNRLFDSTIKDRLSLMKAGRDVVVP 498 (509)
Q Consensus 457 v~~~~VdTifvCyaeDpe~~~~~~~~p~~~~~l~~~~~~~~~ 498 (509)
+-+...|-+--|+..||+. -.+..|+.+.|++.....-|
T Consensus 489 ~~~~l~~li~~cl~~dP~~---RPt~~~l~~~L~~~~~~~~~ 527 (535)
T 2h8h_A 489 CPESLHDLMCQCWRKEPEE---RPTFEYLQAFLEDYFTSTEP 527 (535)
T ss_dssp CCHHHHHHHHHHTCSSGGG---SCCHHHHHHHHHTSSCCCSC
T ss_pred CCHHHHHHHHHHcCCChhH---CcCHHHHHHHHHHHhhccCc
Confidence 3445667788899999995 45777888888776544333
No 4
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=24.35 E-value=22 Score=31.04 Aligned_cols=7 Identities=29% Similarity=0.026 Sum_probs=2.9
Q ss_pred CCCCCee
Q 010493 6 NPTNPLR 12 (509)
Q Consensus 6 ~~~~~~~ 12 (509)
|++||++
T Consensus 62 ~~s~p~~ 68 (138)
T 1jer_A 62 NFVNSDN 68 (138)
T ss_dssp CCTTSCC
T ss_pred CCCCccc
Confidence 3444443
No 5
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=23.25 E-value=20 Score=36.30 Aligned_cols=13 Identities=0% Similarity=-0.064 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHhh
Q 010493 209 IGFCCKVLIISLQ 221 (509)
Q Consensus 209 I~~ai~ilk~A~~ 221 (509)
.+-|++.++.+.+
T Consensus 148 ~~eAl~~~~~al~ 160 (382)
T 2h6f_A 148 LHEEMNYITAIIE 160 (382)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665544
No 6
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=18.27 E-value=76 Score=26.66 Aligned_cols=26 Identities=12% Similarity=0.266 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010493 38 APRIATPPPSQPSRPRSISTSPPAPT 63 (509)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (509)
++++.|+||-||+|.+-+...|+..|
T Consensus 2 ~~~~~~~~~e~~~~~~~~~~~~~~~p 27 (111)
T 1uk5_A 2 SSGSSGAPAEPAAPKSGEAETPPKHP 27 (111)
T ss_dssp CCCCCCCCCCCCCCCCCSSSSCCCCH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCc
No 7
>2rqw_B 24-meric peptide from serine/threonine-protein KI STE20; BEM1P, STE20P, SH3CI, PRR, cytoplasm, cytoskeleton, SH3 DOMA cycle; NMR {Saccharomyces cerevisiae}
Probab=17.71 E-value=74 Score=19.55 Aligned_cols=15 Identities=40% Similarity=0.547 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCC
Q 010493 38 APRIATPPPSQPSRP 52 (509)
Q Consensus 38 ~~~~~~~~~~~~~~~ 52 (509)
|+|.+|-||..++..
T Consensus 10 PsRPAPKPP~s~t~s 24 (26)
T 2rqw_B 10 PSRPAPKPPSSASAS 24 (26)
T ss_dssp CSSCCCCCSSCSCCC
T ss_pred cCCCCCCCCCCCccc
No 8
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=17.54 E-value=27 Score=42.65 Aligned_cols=62 Identities=24% Similarity=0.378 Sum_probs=0.0
Q ss_pred CCCCCeeEEEeCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010493 6 NPTNPLRIVINGGRRVTAPRIATPPPSQPSRQAPRIATPPPSQPSRPRSISTSPPAPTPTPQ 67 (509)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (509)
+|+.|-+-.+-.+.--++|+-.|..++....+|+.++++|...|++|..+.++|..++++|+
T Consensus 1600 sptsps~s~tsp~yspts~~ysptSPsysptSPs~sptsPsysptsPs~sptSPs~sptsps 1661 (1752)
T 3h0g_A 1600 SPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1661 (1752)
T ss_dssp --------------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
No 9
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=17.33 E-value=28 Score=36.73 Aligned_cols=60 Identities=8% Similarity=0.094 Sum_probs=0.0
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCC
Q 010493 19 RRVTAPRIATPPPSQPSRQAPRIATPPPSQPSRPRSISTSPPAPTPTPQQASRTALNSKK 78 (509)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 78 (509)
.+-+..+..|++...++..+++..+++|+++.|++...++++.++++|.........+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (535)
T 2h8h_A 8 KDASQRRRSLEPAENVHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAAAEPKLFGGFN 67 (535)
T ss_dssp ------------------------------------------------------------
T ss_pred CCccccccCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
No 10
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A
Probab=16.29 E-value=1.5e+02 Score=27.52 Aligned_cols=37 Identities=8% Similarity=0.042 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010493 27 ATPPPSQPSRQAPRIATPPPSQPSRPRSISTSPPAPT 63 (509)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (509)
+.++...+....+.....+.++..|+|..++||+.|.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~P~~~~ 230 (230)
T 2dvj_A 194 PASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNT 230 (230)
T ss_dssp SSCCCSCCSTTSCCCCSSSCSSCCCCCSCCCCSCSCC
T ss_pred CCCcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Done!