Query 010494
Match_columns 509
No_of_seqs 132 out of 1441
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 01:11:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010494.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010494hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03167 Chaperonin-60 beta su 100.0 3E-102 6E-107 845.5 51.1 482 25-506 50-531 (600)
2 PRK00013 groEL chaperonin GroE 100.0 1E-101 2E-106 836.0 52.4 473 30-506 1-474 (542)
3 PRK12849 groEL chaperonin GroE 100.0 2E-101 4E-106 834.1 53.3 471 30-504 1-472 (542)
4 PRK12852 groEL chaperonin GroE 100.0 8E-101 2E-105 831.6 53.1 473 30-506 2-475 (545)
5 PTZ00114 Heat shock protein 60 100.0 8E-101 2E-105 832.5 52.8 476 25-503 8-487 (555)
6 PRK12850 groEL chaperonin GroE 100.0 1E-100 3E-105 828.0 52.5 471 30-504 2-473 (544)
7 TIGR02348 GroEL chaperonin Gro 100.0 2E-100 4E-105 825.1 52.7 468 32-503 2-470 (524)
8 cd03344 GroEL GroEL_like type 100.0 3E-100 6E-105 822.8 53.1 470 32-505 1-471 (520)
9 PRK12851 groEL chaperonin GroE 100.0 1E-99 2E-104 821.0 52.7 471 30-504 2-473 (541)
10 CHL00093 groEL chaperonin GroE 100.0 2.2E-99 5E-104 817.7 51.3 470 30-503 1-473 (529)
11 PRK14104 chaperonin GroEL; Pro 100.0 2.9E-99 6E-104 817.5 51.7 472 31-506 3-475 (546)
12 KOG0356 Mitochondrial chaperon 100.0 1.1E-92 2.3E-97 725.5 39.6 479 20-502 6-486 (550)
13 TIGR02339 thermosome_arch ther 100.0 1.6E-81 3.4E-86 680.1 44.9 400 40-503 15-464 (519)
14 cd03343 cpn60 cpn60 chaperonin 100.0 9.1E-81 2E-85 674.5 44.7 403 35-503 11-461 (517)
15 TIGR02347 chap_CCT_zeta T-comp 100.0 1.4E-80 3.1E-85 671.6 44.7 400 40-503 15-470 (531)
16 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 4.6E-81 1E-85 669.9 39.9 395 40-503 11-427 (484)
17 cd03339 TCP1_epsilon TCP-1 (CT 100.0 3.4E-80 7.4E-85 670.3 45.5 404 34-503 18-471 (526)
18 cd03335 TCP1_alpha TCP-1 (CTT 100.0 2.6E-80 5.7E-85 671.4 43.5 405 40-503 7-462 (527)
19 TIGR02343 chap_CCT_epsi T-comp 100.0 5.4E-80 1.2E-84 668.3 45.8 399 40-502 26-474 (532)
20 KOG0361 Chaperonin complex com 100.0 3.1E-81 6.7E-86 613.3 31.6 420 4-503 2-467 (543)
21 TIGR02344 chap_CCT_gamma T-com 100.0 8.3E-80 1.8E-84 667.5 43.6 400 40-503 15-465 (525)
22 cd03340 TCP1_eta TCP-1 (CTT or 100.0 1.7E-79 3.6E-84 664.8 44.4 403 40-503 15-463 (522)
23 TIGR02340 chap_CCT_alpha T-com 100.0 1.5E-79 3.2E-84 666.4 43.8 404 40-502 11-465 (536)
24 cd03338 TCP1_delta TCP-1 (CTT 100.0 1.7E-79 3.7E-84 664.0 42.7 407 40-503 7-460 (515)
25 PTZ00212 T-complex protein 1 s 100.0 8.6E-79 1.9E-83 659.5 45.5 398 40-502 21-469 (533)
26 TIGR02345 chap_CCT_eta T-compl 100.0 1E-78 2.2E-83 657.8 45.1 402 40-503 17-464 (522)
27 TIGR02342 chap_CCT_delta T-com 100.0 1.2E-78 2.6E-83 656.6 43.8 407 40-503 8-461 (517)
28 COG0459 GroL Chaperonin GroEL 100.0 2.5E-80 5.5E-85 661.8 29.1 446 30-505 2-461 (524)
29 cd03337 TCP1_gamma TCP-1 (CTT 100.0 8.9E-79 1.9E-83 652.1 40.9 383 40-503 15-424 (480)
30 cd03336 TCP1_beta TCP-1 (CTT o 100.0 8.2E-78 1.8E-82 650.1 45.9 399 40-503 12-458 (517)
31 TIGR02346 chap_CCT_theta T-com 100.0 3.2E-78 6.9E-83 654.3 40.0 399 40-503 17-462 (531)
32 TIGR02341 chap_CCT_beta T-comp 100.0 3.7E-76 8.1E-81 636.6 45.6 399 40-503 13-459 (519)
33 cd00309 chaperonin_type_I_II c 100.0 2.7E-76 5.8E-81 632.2 43.4 388 34-504 3-411 (464)
34 cd03341 TCP1_theta TCP-1 (CTT 100.0 1.7E-76 3.6E-81 633.3 41.1 388 35-502 3-413 (472)
35 KOG0358 Chaperonin complex com 100.0 8.8E-72 1.9E-76 545.9 26.6 407 40-504 25-479 (534)
36 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 1.4E-69 3E-74 583.8 38.3 386 53-502 1-428 (485)
37 KOG0363 Chaperonin complex com 100.0 1E-66 2.2E-71 508.1 29.0 400 40-504 17-464 (527)
38 KOG0360 Chaperonin complex com 100.0 2.8E-64 6.1E-69 505.5 26.3 405 40-504 18-473 (545)
39 KOG0362 Chaperonin complex com 100.0 4.2E-62 9E-67 493.0 35.4 402 39-505 24-467 (537)
40 KOG0364 Chaperonin complex com 100.0 2.5E-62 5.5E-67 487.2 21.5 417 4-503 1-465 (527)
41 KOG0359 Chaperonin complex com 100.0 5.9E-58 1.3E-62 455.4 20.5 400 40-503 16-461 (520)
42 KOG0357 Chaperonin complex com 100.0 1.2E-54 2.6E-59 420.3 19.7 313 32-503 21-339 (400)
43 cd03333 chaperonin_like chaper 100.0 2.8E-28 6.1E-33 234.4 19.6 191 172-438 3-209 (209)
44 cd03334 Fab1_TCP TCP-1 like do 99.9 1.4E-26 3E-31 229.5 20.0 198 183-439 19-254 (261)
45 KOG0230 Phosphatidylinositol-4 99.2 2.6E-10 5.5E-15 130.1 13.5 207 184-449 334-578 (1598)
46 COG0459 GroL Chaperonin GroEL 97.4 0.00033 7.1E-09 76.3 7.3 90 262-367 259-355 (524)
47 smart00574 POX domain associat 66.1 31 0.00068 30.8 7.5 59 389-460 70-129 (140)
48 PF07526 POX: Associated with 52.9 35 0.00077 30.6 5.7 45 416-460 84-129 (140)
49 TIGR02345 chap_CCT_eta T-compl 45.6 5.5 0.00012 43.8 -0.8 62 272-334 246-316 (522)
50 PF01113 DapB_N: Dihydrodipico 32.7 1.2E+02 0.0026 26.2 5.8 42 250-293 70-111 (124)
51 PRK13600 putative ribosomal pr 32.0 2E+02 0.0043 23.4 6.5 54 266-329 22-75 (84)
52 COG3962 Acetolactate synthase 25.8 48 0.001 35.6 2.4 40 422-461 216-255 (617)
53 COG4148 ModC ABC-type molybdat 24.2 1E+02 0.0022 31.3 4.1 43 244-286 144-192 (352)
54 PF07278 DUF1441: Protein of u 24.1 1.6E+02 0.0035 26.8 5.1 27 470-496 102-128 (152)
55 KOG3954 Electron transfer flav 23.3 7.1E+02 0.015 25.0 9.5 31 413-443 232-262 (336)
56 COG1433 Uncharacterized conser 22.7 1.8E+02 0.0038 25.5 4.9 38 265-309 57-94 (121)
57 TIGR01101 V_ATP_synt_F vacuola 21.3 3.5E+02 0.0075 23.4 6.4 67 258-327 44-115 (115)
No 1
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=2.9e-102 Score=845.54 Aligned_cols=482 Identities=69% Similarity=1.031 Sum_probs=464.4
Q ss_pred CcccccchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHH
Q 010494 25 SVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLV 104 (509)
Q Consensus 25 ~~~~~~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll 104 (509)
.+.+.|+|+|.||.+-+||+.+++|+..|+++|++||||+||+|||++++|+++|||||+||+|+|+++||++|+||+|+
T Consensus 50 ~~~~~~~k~~~~~~~~~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll 129 (600)
T PLN03167 50 SPKVKAAKELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLV 129 (600)
T ss_pred CchhhhcceeecCCcHHHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHH
Confidence 36667899999993117999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHhhhhcCCc
Q 010494 105 RQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGND 184 (509)
Q Consensus 105 ~~~a~~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~l~~va~ts~~~~ 184 (509)
+++|++||+++||||||++||+++||+++.+++++|+||..|++||++|.+.++++|+++++++++.+|.++|++|++++
T Consensus 130 ~~~a~~qd~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~d~~L~~vA~tS~~~~ 209 (600)
T PLN03167 130 RQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVEDSELADVAAVSAGNN 209 (600)
T ss_pred HHHHHhhhhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999997668999999999999
Q ss_pred hhhhhHHHHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHHHHH
Q 010494 185 YTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFK 264 (509)
Q Consensus 185 ~~l~~li~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~ 264 (509)
+.|++++++|+.+++++|.|.+++|++++|++++++|++|+++|.||||.+++++|+++++||+|+++|++|++++++.+
T Consensus 210 ~~i~~liaeAv~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~~~~l~~ 289 (600)
T PLN03167 210 YEVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIG 289 (600)
T ss_pred HHHHHHHHHHHHHhccCCcEEeccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccccCCHHHHHH
Confidence 99999999999999998999999999999998999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCcc
Q 010494 265 ILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKE 344 (509)
Q Consensus 265 ~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~ 344 (509)
+++++.+.|.|+||++++|+++++++|+.|+++|..+|+|||+|+||+.++++|+|||++|||+++++++++++++++++
T Consensus 290 ~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~ 369 (600)
T PLN03167 290 ILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKE 369 (600)
T ss_pred HHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888889999999
Q ss_pred ccCcceEEEEecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHH
Q 010494 345 VLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLR 424 (509)
Q Consensus 345 ~lG~~~~i~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~ 424 (509)
+||+|++|++.+++|+++++.++++.+++|+..++..+++++++|++++|++|+++|++++++|+|||+|+.+++|++|+
T Consensus 370 ~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~ 449 (600)
T PLN03167 370 VLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLR 449 (600)
T ss_pred HCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred HHHHHHHHHHHHhhCccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc
Q 010494 425 IEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHK 504 (509)
Q Consensus 425 ~~dAl~a~~~al~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~~ 504 (509)
++||++++|+++++|+|||||++|++++.+|++++...++++|+++++++++||+.||++||+|||+|+.+++.+|++.+
T Consensus 450 i~DAl~avk~ai~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~~ 529 (600)
T PLN03167 450 VEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSND 529 (600)
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhcC
Confidence 99999999999999999999999999999999988778899999899999999999999999999999999999998544
Q ss_pred CC
Q 010494 505 CI 506 (509)
Q Consensus 505 ~~ 506 (509)
+.
T Consensus 530 ~~ 531 (600)
T PLN03167 530 NP 531 (600)
T ss_pred CC
Confidence 43
No 2
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1e-101 Score=835.95 Aligned_cols=473 Identities=49% Similarity=0.806 Sum_probs=453.1
Q ss_pred cchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHH
Q 010494 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA 109 (509)
Q Consensus 30 ~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~ 109 (509)
|+|++.|| +++|..|++|+..++++|+|||||+||+|||+++.|+++|||||+||+|+|+++||++++||+|++++|+
T Consensus 1 ~~~~~~~~--~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~ 78 (542)
T PRK00013 1 MAKDIKFG--EDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVAS 78 (542)
T ss_pred CCchhhch--HHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHH
Confidence 56899999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcH-HHHHHhhhhcCCchhhh
Q 010494 110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVG 188 (509)
Q Consensus 110 ~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~ 188 (509)
+||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++|+++. +|.++|+||+++++.++
T Consensus 79 ~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~~~~~l~~va~ts~~~~~~ls 158 (542)
T PRK00013 79 KTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVEDKEEIAQVATISANGDEEIG 158 (542)
T ss_pred hcCcccCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhcccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876 89999999999999999
Q ss_pred hHHHHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHHHHHHHHH
Q 010494 189 KMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268 (509)
Q Consensus 189 ~li~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~ 268 (509)
+++++|+..++++|.|.++.+....+.+++++|++|+++|.+|||.+++++|+++++||+|+++|++|++++++.+++++
T Consensus 159 ~lv~~Av~~v~~~g~i~i~~~~~~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~ 238 (542)
T PRK00013 159 KLIAEAMEKVGKEGVITVEESKGFETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQ 238 (542)
T ss_pred HHHHHHHHHhCcCCcEEEEEcCCCCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCccCCHHHHHHHHHH
Confidence 99999999999888887765544444459999999999999999999988999999999999999999999999999999
Q ss_pred HHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCc
Q 010494 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGT 348 (509)
Q Consensus 269 i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~ 348 (509)
+.+.|+||||++++|+++++++|+.|+++|+++|+|||+|+||+.++++|+|||++|||++++++.+++++++++++||+
T Consensus 239 i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~ 318 (542)
T PRK00013 239 VAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQ 318 (542)
T ss_pred HHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred ceEEEEecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHH
Q 010494 349 AIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDA 428 (509)
Q Consensus 349 ~~~i~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dA 428 (509)
|+.+++++++|++|++|++++.+..|++.++.+++++.++|++++|+||++||+|+++||+|||+|+.+++|++|+++||
T Consensus 319 ~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Da 398 (542)
T PRK00013 319 AKKVVVTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDA 398 (542)
T ss_pred eeEEEEecCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccCC
Q 010494 429 LNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHKCI 506 (509)
Q Consensus 429 l~a~~~al~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~~~~ 506 (509)
+|++|+++++|+|||||++|+++|.+|+++ ...++.+| +++++|++||+.||++||+|||+|+.+++++|++.+++
T Consensus 399 l~~vk~al~~g~VpGGGa~e~~~s~~L~~~-~~~~~~~~-~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~~~ 474 (542)
T PRK00013 399 LHATRAAVEEGIVPGGGVALLRAAPALEAL-KGLNGDEA-TGINIVLRALEAPLRQIAENAGLEGSVVVEKVKNGKGK 474 (542)
T ss_pred HHHHHHHHHcCcccCcHHHHHHHHHHHHHh-cCCChHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCC
Confidence 999999999999999999999999999988 56667777 58999999999999999999999999999999886544
No 3
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.7e-101 Score=834.12 Aligned_cols=471 Identities=48% Similarity=0.797 Sum_probs=456.3
Q ss_pred cchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHH
Q 010494 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA 109 (509)
Q Consensus 30 ~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~ 109 (509)
|+|.|.|| ++++..|++|+..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||.+|+||+|++++|+
T Consensus 1 ~~~~~~~~--~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~ 78 (542)
T PRK12849 1 MAKIIKFD--EEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVAS 78 (542)
T ss_pred CCccccch--HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHH
Confidence 56899999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcH-HHHHHhhhhcCCchhhh
Q 010494 110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVG 188 (509)
Q Consensus 110 ~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~ 188 (509)
+||+++||||||+|+|+++||+++.+++++|+||+.|++||++|.+.++++|+++++|+++. +|.++|+||+++++.++
T Consensus 79 ~qd~e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~ 158 (542)
T PRK12849 79 KTNDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGSEEIAQVATISANGDEEIG 158 (542)
T ss_pred hcCCccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876 89999999999999999
Q ss_pred hHHHHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHHHHHHHHH
Q 010494 189 KMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268 (509)
Q Consensus 189 ~li~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~ 268 (509)
+++++|+..++++|.+.+++|++++|++++++|++|+++|.+|+|.++.++|+++++||+|+++|++|++++++.+++++
T Consensus 159 ~lv~~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~~~~~l~~ 238 (542)
T PRK12849 159 ELIAEAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEK 238 (542)
T ss_pred HHHHHHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCcCCHHHHHHHHHH
Confidence 99999999999888888889999998669999999999999999999888999999999999999999999999999999
Q ss_pred HHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCc
Q 010494 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGT 348 (509)
Q Consensus 269 i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~ 348 (509)
+.+.|+||||++++|+++|+++|..|+++|.++|+|||+|+|+++++++|+|||.+|||++++++.+.+++++++++||+
T Consensus 239 i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~ 318 (542)
T PRK12849 239 VAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGR 318 (542)
T ss_pred HHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCce
Confidence 99999999999999999999999999999999999999999999999999999999999999988887899999999999
Q ss_pred ceEEEEecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHH
Q 010494 349 AIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDA 428 (509)
Q Consensus 349 ~~~i~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dA 428 (509)
|+.|++++++|+++++|++++++..|+++++++++++.++|++++|+||+++|+++++||+|||+|+.+++|++|+++||
T Consensus 319 ~~~v~~~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DA 398 (542)
T PRK12849 319 AKRVTITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDA 398 (542)
T ss_pred eeEEEEeeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc
Q 010494 429 LNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHK 504 (509)
Q Consensus 429 l~a~~~al~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~~ 504 (509)
+|++++++++|||||||++|+++|.+|.+++ ..++.+| +++++|++||+.||++||+|||+|+.+++.+|++.+
T Consensus 399 l~~~~~a~~~g~VpGGGa~e~~ls~~L~~~~-~~~g~~~-~~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~ 472 (542)
T PRK12849 399 LNATRAAVEEGIVPGGGVALLRAAKALDELA-GLNGDQA-AGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLELE 472 (542)
T ss_pred HHHHHHHHHcCeecCCCHHHHHHHHHHHHhh-CCChHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC
Confidence 9999999999999999999999999999988 6777777 589999999999999999999999999999998764
No 4
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=8.4e-101 Score=831.56 Aligned_cols=473 Identities=47% Similarity=0.786 Sum_probs=455.4
Q ss_pred cchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHH
Q 010494 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA 109 (509)
Q Consensus 30 ~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~ 109 (509)
|+|+|.|| +++|+.|++|+..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++||++++||+|++++|+
T Consensus 2 ~~~~~~~~--~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~ 79 (545)
T PRK12852 2 AAKDVKFS--GDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVAS 79 (545)
T ss_pred Ccchhhcc--HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHh
Confidence 47999999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcH-HHHHHhhhhcCCchhhh
Q 010494 110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVG 188 (509)
Q Consensus 110 ~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~ 188 (509)
+||+++||||||+|+||++||+++.+++++|+||..|++||++|.+.++++|+++++|+++. ++.++|++|+++++.|+
T Consensus 80 ~q~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~ 159 (545)
T PRK12852 80 KTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVASSAEIAQVGTISANGDAAIG 159 (545)
T ss_pred hcCceecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhcCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876 89999999999999999
Q ss_pred hHHHHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHHHHHHHHH
Q 010494 189 KMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268 (509)
Q Consensus 189 ~li~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~ 268 (509)
+++++|+.+++++|.|.+..|++..+.+++++|++|+++|.+|||++++++|+..++||+|+++|++|++++++.++++.
T Consensus 160 ~li~eA~~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~ 239 (545)
T PRK12852 160 KMIAQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEA 239 (545)
T ss_pred HHHHHHHHHhccCCceeeecCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCccCCHHHHHHHHHH
Confidence 99999999999999999888888755559999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCc
Q 010494 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGT 348 (509)
Q Consensus 269 i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~ 348 (509)
+.+.|+||||++++|+++++++|+.|+++|.++|+|||+|+||++++++|+|||++|||++++++.+.+++++++++||+
T Consensus 240 i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~ 319 (545)
T PRK12852 240 VVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGR 319 (545)
T ss_pred HHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred ceEEEEecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHH
Q 010494 349 AIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDA 428 (509)
Q Consensus 349 ~~~i~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dA 428 (509)
|+.+++++++|++++++++++.+.+|+++++++++++.++|++++|++|++||+++++||+|||+|+.+++|++|+++||
T Consensus 320 ~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DA 399 (545)
T PRK12852 320 AKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDA 399 (545)
T ss_pred CcEEEEEccEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccCC
Q 010494 429 LNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHKCI 506 (509)
Q Consensus 429 l~a~~~al~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~~~~ 506 (509)
+|++++++++|||||||++|++++.+|.+++.. ++.+| +++++|++||+.||++||+|||+|+.+++++|++.+++
T Consensus 400 l~a~~~a~~~g~VpGGGa~e~~~s~~L~~~~~~-~~~~q-~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~~~ 475 (545)
T PRK12852 400 LNATRAAVQEGIVPGGGVALLRAKKAVGRINND-NADVQ-AGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSE 475 (545)
T ss_pred HHHHHHHHhcCCCcCchHHHHHHHHHHHHhhcC-CcHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCC
Confidence 999999999999999999999999999988765 56666 69999999999999999999999999999999875543
No 5
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=8.2e-101 Score=832.53 Aligned_cols=476 Identities=47% Similarity=0.781 Sum_probs=458.0
Q ss_pred CcccccchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHH
Q 010494 25 SVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLV 104 (509)
Q Consensus 25 ~~~~~~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll 104 (509)
...+.|++.+.|| +++|..|++|+..|+++|+|||||+||+|||+++.|+++|||||+||+|+|+++||++++||+|+
T Consensus 8 ~~~~~~~~~~~~~--~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll 85 (555)
T PTZ00114 8 SRYRFKGKEIRFG--DEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLI 85 (555)
T ss_pred hHHHHhhhhhhhH--HHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHH
Confidence 3567778889999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcH-HHHHHhhhhcCC
Q 010494 105 RQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGN 183 (509)
Q Consensus 105 ~~~a~~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~l~~va~ts~~~ 183 (509)
+++|++||+++||||||+|+||++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++. +|.++|+||+++
T Consensus 86 ~~~a~~qd~evGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~ 165 (555)
T PTZ00114 86 RQVASKTNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILNVATISANG 165 (555)
T ss_pred HHHHHhhccccCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999866 899999999999
Q ss_pred chhhhhHHHHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHHHH
Q 010494 184 DYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMF 263 (509)
Q Consensus 184 ~~~l~~li~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~ 263 (509)
++.|++++++|+.+++++|.|.+++|++++|++++++|++|+++|.+|||.+++++|+.+++||+|+++|++|++++++.
T Consensus 166 ~~~l~~li~eAv~~vg~~g~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~~~~~i~ 245 (555)
T PTZ00114 166 DVEIGSLIADAMDKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISSIQSIL 245 (555)
T ss_pred hHHHHHHHHHHHHHhCcCCcEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCCCHHHHH
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecc-cCccccCCC
Q 010494 264 KILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDE-MGLTLDKAG 342 (509)
Q Consensus 264 ~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~-~~~~~~~~~ 342 (509)
++++++.+.|+||||++++|+++++++|..|+++|.++|+|||+|+||++++++|+|||++|||+++++. .+..+++++
T Consensus 246 ~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~ 325 (555)
T PTZ00114 246 PILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFD 325 (555)
T ss_pred HHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 666778899
Q ss_pred ccccCcceEEEEecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHH
Q 010494 343 KEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQ 422 (509)
Q Consensus 343 ~~~lG~~~~i~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~ 422 (509)
+++||+|++|+++++++++++++++++.|++|+..++++++...++|++++|++|+++|+++++||+|||+|+.+++|++
T Consensus 326 ~~~LG~a~~v~~~~~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~ 405 (555)
T PTZ00114 326 PSMLGSAKKVTVTKDETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKK 405 (555)
T ss_pred HHHcCCCceEEEEeceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCccccCchhHHHHHHHHHhHhc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Q 010494 423 LRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKE--LLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQV 500 (509)
Q Consensus 423 ~~~~dAl~a~~~al~~gvvpGGGa~e~~ls~~L~~~~~--~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l 500 (509)
|+++||++++++++++|||||||++|+++|..|++++. ..++++| +|+++|++||+.||++||+|||+|+.+++++|
T Consensus 406 r~i~Dal~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~~~-~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l 484 (555)
T PTZ00114 406 DRIEDALNATRAAVEEGIVPGGGVALLRASKLLDKLEEDNELTPDQR-TGVKIVRNALRLPTKQIAENAGVEGAVVVEKI 484 (555)
T ss_pred HHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHhhccCCchHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999999999999999999999998875 4556666 59999999999999999999999999999999
Q ss_pred hcc
Q 010494 501 SAH 503 (509)
Q Consensus 501 ~~~ 503 (509)
++.
T Consensus 485 ~~~ 487 (555)
T PTZ00114 485 LEK 487 (555)
T ss_pred Hhc
Confidence 873
No 6
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.5e-100 Score=828.01 Aligned_cols=471 Identities=46% Similarity=0.792 Sum_probs=452.7
Q ss_pred cchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHH
Q 010494 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA 109 (509)
Q Consensus 30 ~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~ 109 (509)
|+|+|.|| ++||+.|+.|+..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++||++|+||+|++++|+
T Consensus 2 ~~~~~~~~--~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~ 79 (544)
T PRK12850 2 AAKEIRFS--TDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVAS 79 (544)
T ss_pred Ccceeccc--HHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHh
Confidence 57899999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcH-HHHHHhhhhcCCchhhh
Q 010494 110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVG 188 (509)
Q Consensus 110 ~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~ 188 (509)
+||+++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.++++|+++++++++. +|.++|++|+++++.|+
T Consensus 80 ~qd~e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~ 159 (544)
T PRK12850 80 KTNDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVTSSKEIAQVATISANGDESIG 159 (544)
T ss_pred hhcchhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876 89999999999999999
Q ss_pred hHHHHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHHHHHHHHH
Q 010494 189 KMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268 (509)
Q Consensus 189 ~li~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~ 268 (509)
+++++|+..++++|.|.++.+....+++++++|++|+++|.+|||.++.++++.+++||+|+++|+++++.+++.+++++
T Consensus 160 ~lv~eAv~~vg~~g~i~v~~~~~~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~l~~ 239 (544)
T PRK12850 160 EMIAEAMDKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISNLQDLLPILEA 239 (544)
T ss_pred HHHHHHHHHhcccCceeeEEccccCcceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEecccCCHHHHHHHHHH
Confidence 99999999999888887766655556669999999999999999999888899999999999999999999999999999
Q ss_pred HHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCc
Q 010494 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGT 348 (509)
Q Consensus 269 i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~ 348 (509)
+.+.|+||||++++|+++++++|+.|+++|.++++|||+|+||++++++|+|||++|||++++++.+++++++++++||+
T Consensus 240 i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~ 319 (544)
T PRK12850 240 VVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGR 319 (544)
T ss_pred HHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred ceEEEEecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHH
Q 010494 349 AIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDA 428 (509)
Q Consensus 349 ~~~i~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dA 428 (509)
|+.+++.+++|++|+||+++++++.|+++++++++++.++|++++|+||++||+++++||+|||+|+.+++|++|+++||
T Consensus 320 ~~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DA 399 (544)
T PRK12850 320 AKRVLITKENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDA 399 (544)
T ss_pred CcEEEEEeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc
Q 010494 429 LNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHK 504 (509)
Q Consensus 429 l~a~~~al~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~~ 504 (509)
++++++++++|||||||++|++++..|+++ +..++.+| +++++|++||+.||++||+|||+|+.+++.+|++.+
T Consensus 400 l~~~k~a~~~g~VpGGGa~e~~~s~~L~~~-~~~~~~~~-~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~ 473 (544)
T PRK12850 400 LHATRAAVEEGIVPGGGVALLRARSALRGL-KGANADET-AGIDIVRRALEEPLRQIATNAGFEGSVVVGKVAELP 473 (544)
T ss_pred HHHHHHHHhcCCccCCcHHHHHHHHHHHhc-cCCChHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC
Confidence 999999999999999999999999999988 55666666 599999999999999999999999999999998754
No 7
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=2e-100 Score=825.09 Aligned_cols=468 Identities=49% Similarity=0.810 Sum_probs=452.8
Q ss_pred hhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhh
Q 010494 32 KEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGART 111 (509)
Q Consensus 32 k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~ 111 (509)
|++.|| +++|+.|++|+..++++|+|||||+||+|||+++.|+++|||||+||+|+|+++||++++||+|++++|++|
T Consensus 2 ~~~~~~--~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~q 79 (524)
T TIGR02348 2 KQIKFD--EEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKT 79 (524)
T ss_pred cccccc--HHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHcc
Confidence 689999 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcH-HHHHHhhhhcCCchhhhhH
Q 010494 112 NDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVGKM 190 (509)
Q Consensus 112 d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~~l 190 (509)
|+++||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++. ++.++|++|+++++.++++
T Consensus 80 d~e~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~l 159 (524)
T TIGR02348 80 NDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVKGKKEIAQVATISANNDEEIGSL 159 (524)
T ss_pred CceeCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876 8999999999999999999
Q ss_pred HHHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHHHHHHHHHHH
Q 010494 191 ISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAV 270 (509)
Q Consensus 191 i~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~i~ 270 (509)
+++|+..++++|.|.++.|+..+|.+++++|++|+++|.+|+|.++++++++.++||+|+++|++|++++++.++++++.
T Consensus 160 v~~A~~~v~~~~~i~v~~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~i~~~l~~i~ 239 (524)
T TIGR02348 160 IAEAMEKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISNIKDLLPLLEKVA 239 (524)
T ss_pred HHHHHHHhCcCCcEeeecCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCcCCHHHHHHHHHHHH
Confidence 99999999998888888888886766999999999999999999988899999999999999999999999999999999
Q ss_pred hcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcce
Q 010494 271 KEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAI 350 (509)
Q Consensus 271 ~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~ 350 (509)
+.|+||||++++|+++++++|+.|+++|+++|+|||+|+|++.++++|+|||++|||++++++.+++++++++++||+|+
T Consensus 240 ~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~ 319 (524)
T TIGR02348 240 QSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAK 319 (524)
T ss_pred HhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred EEEEecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHH
Q 010494 351 KVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALN 430 (509)
Q Consensus 351 ~i~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~ 430 (509)
.+++.+++|++++++++++.++.|++.++++++++.++|++++|+||+++|+|+++||+|||+|+.+++|++|+++||+|
T Consensus 320 ~v~~~~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~ 399 (524)
T TIGR02348 320 KVTVDKDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALN 399 (524)
T ss_pred EEEEeecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 431 ATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 431 a~~~al~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
++|+++++|||||||++|+++|.+|++ ....++.+| +++++|++||+.||++||+|||+|+.+++++|++.
T Consensus 400 ~~r~a~~~g~VpGGGa~e~~~s~~L~~-~~~~~~~~~-~~~~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~ 470 (524)
T TIGR02348 400 ATRAAVEEGIVPGGGVALLRAAAALEG-LKGDNEDEA-IGIDIVKRALEAPLRQIAENAGKDGAVVAEKVKES 470 (524)
T ss_pred HHHHHHhcCCccCCcHHHHHHHHHHHH-hccCChHHH-HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc
Confidence 999999999999999999999999998 556667666 59999999999999999999999999999999875
No 8
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.5e-100 Score=822.85 Aligned_cols=470 Identities=51% Similarity=0.824 Sum_probs=454.9
Q ss_pred hhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhh
Q 010494 32 KEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGART 111 (509)
Q Consensus 32 k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~ 111 (509)
|+|.|| +++|+.|++|+..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++||++++||+|++++|++|
T Consensus 1 ~~~~~g--~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~q 78 (520)
T cd03344 1 KDIKFG--EEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKT 78 (520)
T ss_pred Ccccch--HHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhh
Confidence 468899 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcH-HHHHHhhhhcCCchhhhhH
Q 010494 112 NDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVGKM 190 (509)
Q Consensus 112 d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~~l 190 (509)
|+++||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++. +|.++|+||+++++.++++
T Consensus 79 d~e~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ts~~~~~~l~~l 158 (520)
T cd03344 79 NDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGEL 158 (520)
T ss_pred ccccCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876 8999999999999999999
Q ss_pred HHHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHHHHHHHHHHH
Q 010494 191 ISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAV 270 (509)
Q Consensus 191 i~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~i~ 270 (509)
+++|+..++++|.|.+++|++++|++++++|++|+++|.+|+|.+++++|+++++||+|+++|+++++++++.++++++.
T Consensus 159 v~~A~~~v~~~~~i~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~~~~~l~~~l~~i~ 238 (520)
T cd03344 159 IAEAMEKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVA 238 (520)
T ss_pred HHHHHHHhccCCcEEEEeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999988888889999999966999999999999999999998889999999999999999999999999999999
Q ss_pred hcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcce
Q 010494 271 KEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAI 350 (509)
Q Consensus 271 ~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~ 350 (509)
+.|+||||++++|+++++++|..|+++|.++|+|||+|++|++++++|+|||.+|||++++++++++++++++++||+|+
T Consensus 239 ~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~ 318 (520)
T cd03344 239 KAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAK 318 (520)
T ss_pred hhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred EEEEecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHH
Q 010494 351 KVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALN 430 (509)
Q Consensus 351 ~i~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~ 430 (509)
.+++++++|+++++|+++++++.|++.++++++++.++|++++|+||+++|+|+++||+|||+|+.+++|++|+++||++
T Consensus 319 ~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~ 398 (520)
T cd03344 319 KVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALN 398 (520)
T ss_pred EEEEeeceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccC
Q 010494 431 ATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHKC 505 (509)
Q Consensus 431 a~~~al~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~~~ 505 (509)
++++++++|+|||||++|++++.+|++++. .++++| +++++|++||+.||++||+|||+|+.+++++|++.+.
T Consensus 399 ~~k~a~~~g~VpGGGa~e~~~s~~L~~~~~-~~~~~~-~~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~~ 471 (520)
T cd03344 399 ATRAAVEEGIVPGGGVALLRASPALDKLKA-LNGDEK-LGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPD 471 (520)
T ss_pred HHHHHHhcCCCcCCcHHHHHHHHHHHHhcc-CChHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhcC
Confidence 999999999999999999999999999887 767777 5999999999999999999999999999999987654
No 9
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1e-99 Score=820.98 Aligned_cols=471 Identities=46% Similarity=0.797 Sum_probs=450.8
Q ss_pred cchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHH
Q 010494 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA 109 (509)
Q Consensus 30 ~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~ 109 (509)
|+|++.|| +++++.|++|+..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||++++||+|++++|+
T Consensus 2 ~~~~~~~~--~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~ 79 (541)
T PRK12851 2 AAKEVKFH--VEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVAS 79 (541)
T ss_pred Ccceeccc--HHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHH
Confidence 57899999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcH-HHHHHhhhhcCCchhhh
Q 010494 110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVG 188 (509)
Q Consensus 110 ~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~ 188 (509)
+||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++++++. ++.++|++|+++++.|+
T Consensus 80 ~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~~~~l~~va~~s~~~~~~l~ 159 (541)
T PRK12851 80 KTNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTTNAEIAQVATISANGDAEIG 159 (541)
T ss_pred hhhHhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999866 79999999999999999
Q ss_pred hHHHHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHHHHHHHHH
Q 010494 189 KMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268 (509)
Q Consensus 189 ~li~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~ 268 (509)
+++++|+..++++|.|.++.+....+++++++|++|+++|.+|||.++.++|+++++||+|+++|+++++.+++.+++++
T Consensus 160 ~lv~~Av~~vg~~g~i~i~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~ 239 (541)
T PRK12851 160 RLVAEAMEKVGNEGVITVEESKTAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISNLQDLLPVLEA 239 (541)
T ss_pred HHHHHHHHHhcccCceEEEEccCCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcCcHHHHHHHHHH
Confidence 99999999999888777655444344459999999999999999999988999999999999999999999999999999
Q ss_pred HHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCc
Q 010494 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGT 348 (509)
Q Consensus 269 i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~ 348 (509)
+.+.|+||||++++|+++++++|+.|+++|.++|+|||+|+||++++++|+|||++|||++++++.+++++++++++||+
T Consensus 240 i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~ 319 (541)
T PRK12851 240 VVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGR 319 (541)
T ss_pred HHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988777889999999999
Q ss_pred ceEEEEecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHH
Q 010494 349 AIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDA 428 (509)
Q Consensus 349 ~~~i~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dA 428 (509)
|+.+++.+++|+++++|++++++..|++.++++++++.++|++++|++|++||+|+++||+|||+|+.+++|++|+++||
T Consensus 320 ~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DA 399 (541)
T PRK12851 320 AKKVVVEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDA 399 (541)
T ss_pred ccEEEEEcceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc
Q 010494 429 LNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHK 504 (509)
Q Consensus 429 l~a~~~al~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~~ 504 (509)
++++++++++|||||||++|+++|..|++++.. ++.+| +++++|++||+.||++||+|||+|+.+++.+|++.+
T Consensus 400 l~a~~~al~~g~VpGGGa~e~~~s~~L~~~~~~-~~~~~-~~~~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~ 473 (541)
T PRK12851 400 LHATRAAVEEGIVPGGGVALLRAVKALDKLETA-NGDQR-TGVEIVRRALEAPVRQIAENAGAEGSVVVGKLREKP 473 (541)
T ss_pred HHHHHHHHHcCcccCchHHHHHHHHHHHHHhcC-CcHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC
Confidence 999999999999999999999999999988765 56666 699999999999999999999999999999998764
No 10
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=2.2e-99 Score=817.74 Aligned_cols=470 Identities=49% Similarity=0.820 Sum_probs=450.4
Q ss_pred cchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHH
Q 010494 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA 109 (509)
Q Consensus 30 ~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~ 109 (509)
|+|+|.|| ++||+++++||..++++|++||||+||+|||+++.|+++|||||+||+|+|+++||++++|++|++++|.
T Consensus 1 ~~~~~~~~--~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~ 78 (529)
T CHL00093 1 MSKKILYQ--DNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAAS 78 (529)
T ss_pred CCceeecC--HHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHH
Confidence 56899999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcH-HHHHHhhhhcCCchhhh
Q 010494 110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVG 188 (509)
Q Consensus 110 ~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~ 188 (509)
+|++++||||||+|+|+++||+++.+++++|+||..|++||++|.+.+++.|+++++|+++. +|.++|++|+++++.|+
T Consensus 79 ~~~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~d~~~L~~VA~ts~~~~~~l~ 158 (529)
T CHL00093 79 KTNDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVEDIQAITQVASISAGNDEEVG 158 (529)
T ss_pred hcCceecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876 89999999999999999
Q ss_pred hHHHHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCH-HHHHHHHH
Q 010494 189 KMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNP-KDMFKILD 267 (509)
Q Consensus 189 ~li~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~-~~l~~~le 267 (509)
+++++|+.+++++|.|.++.|+..++.+++++|++|+++|.+|||.+++++|+.+++||+|+++|++++.. .++.++++
T Consensus 159 ~lv~eAv~~vg~~g~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~~~i~~~l~ 238 (529)
T CHL00093 159 SMIADAIEKVGREGVISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQQDLLPILE 238 (529)
T ss_pred HHHHHHHHHhccCCceeecCCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCchHHHHHHHHH
Confidence 99999999999889888777766566669999999999999999999999999999999999999999987 88999999
Q ss_pred HHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccC
Q 010494 268 SAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLG 347 (509)
Q Consensus 268 ~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG 347 (509)
.+.+.+.|+||++++|+++++++|+.|+.+|+.+|+|||+|+++++++++|+|||++|||++++++.+.+++++++++||
T Consensus 239 ~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG 318 (529)
T CHL00093 239 QVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLG 318 (529)
T ss_pred HHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCC
Confidence 99999999999999999999999999998888999999999999999999999999999999999888889999999999
Q ss_pred cceEEEEecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHH
Q 010494 348 TAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIED 427 (509)
Q Consensus 348 ~~~~i~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~d 427 (509)
+|+.+++.++++++++ .++++.+..|+..++++++.+.++|++++|+||+++|+|+++||+|||+|+.+++|++|+++|
T Consensus 319 ~~~~v~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~D 397 (529)
T CHL00093 319 QARRIIVTKDSTTIIA-DGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLED 397 (529)
T ss_pred cceEEEEecCEEEEEe-cCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHH
Confidence 9999999999999998 578899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCccccCchhHHHHHHHHHhHhc-cCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 428 ALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKE-LLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 428 Al~a~~~al~~gvvpGGGa~e~~ls~~L~~~~~-~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
|++++|+++++|+|||||++|+++|..|++++. ..++.+| +++++|++||+.||++||+|||+|+.+++++|++.
T Consensus 398 Al~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~g~~~-~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~ 473 (529)
T CHL00093 398 AINATKAAVEEGIVPGGGATLVHLSENLKTWAKNNLKEDEL-IGALIVARAILAPLKRIAENAGKNGSVIIEKVQEQ 473 (529)
T ss_pred HHHHHHHHHHcCcccCCcHHHHHHHHHHHHHhccCCChHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcc
Confidence 999999999999999999999999999999876 5667777 58999999999999999999999999999999875
No 11
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=2.9e-99 Score=817.48 Aligned_cols=472 Identities=45% Similarity=0.783 Sum_probs=452.5
Q ss_pred chhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHh
Q 010494 31 VKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGAR 110 (509)
Q Consensus 31 ~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~ 110 (509)
+|++.|| +++|+.|++|+..++++|++||||+||+|||+++.|+++|||||+||+|+|++++|+|++||+|++++|++
T Consensus 3 ~~~~~~~--~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~ 80 (546)
T PRK14104 3 AKEVKFG--VDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASK 80 (546)
T ss_pred cceecch--HHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHh
Confidence 4789999 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcH-HHHHHhhhhcCCchhhhh
Q 010494 111 TNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVGK 189 (509)
Q Consensus 111 ~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~~ 189 (509)
||+++||||||+|+||++||+++.+++++|+||+.|++||++|.+.++++|+++++|+++. ++.++|++|+++++.+++
T Consensus 81 qd~e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~~~~l~~va~~s~~~d~~i~~ 160 (546)
T PRK14104 81 SADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGK 160 (546)
T ss_pred hcccccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcCchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999866 799999999999999999
Q ss_pred HHHHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHHHHHHHHHH
Q 010494 190 MISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSA 269 (509)
Q Consensus 190 li~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~i 269 (509)
++++|+.+++++|.|.++.++++++++++++|++|+++|.||||.++++.++.++++|+|+++|.++++++++.++++.+
T Consensus 161 lv~~Av~~vg~~g~i~v~~~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i 240 (546)
T PRK14104 161 FLADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAV 240 (546)
T ss_pred HHHHHHHHhccCCceeeEecccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhhhcCHHHHHHHHHHH
Confidence 99999999999999998888888666699999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcc
Q 010494 270 VKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTA 349 (509)
Q Consensus 270 ~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~ 349 (509)
.+.|+||||++++|+++|+++|..|++++.++|+|||+|+||+.++++|+|||++|||++++++.+..++++++++||+|
T Consensus 241 ~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a 320 (546)
T PRK14104 241 VQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRA 320 (546)
T ss_pred HHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCce
Confidence 99999999999999999999999999999899999999999999999999999999999999888888999999999999
Q ss_pred eEEEEecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHH
Q 010494 350 IKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDAL 429 (509)
Q Consensus 350 ~~i~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl 429 (509)
+++++++++|++++||++++.+.+|+++|+.+++++.++|++++|+||+++|+++++||+|||+|+.+++|++|+++||+
T Consensus 321 ~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal 400 (546)
T PRK14104 321 KKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAM 400 (546)
T ss_pred eEEEEcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccCC
Q 010494 430 NATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHKCI 506 (509)
Q Consensus 430 ~a~~~al~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~~~~ 506 (509)
|++++++++|||||||++|++++..|+++.. ..+.+| +++++|++||+.||++||+|||+|+.+++.+|++.+++
T Consensus 401 ~a~~~ai~~g~VpGGGa~e~~~s~~L~~~~~-~~~~~~-~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~~~ 475 (546)
T PRK14104 401 HATRAAVEEGIVPGGGVALLRASEQLKGIKT-KNDDQK-TGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKEQY 475 (546)
T ss_pred HHHHHHHHcCcCcCchHHHHHHHHHHHHhhc-CChHHH-HHHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcCCC
Confidence 9999999999999999999999999998743 445455 69999999999999999999999999999999875443
No 12
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-92 Score=725.47 Aligned_cols=479 Identities=47% Similarity=0.768 Sum_probs=465.6
Q ss_pred CCCCCCcccccchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccch
Q 010494 20 KRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENI 99 (509)
Q Consensus 20 ~~~~~~~~~~~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ 99 (509)
++.++-.+| ++|+|.|| .++|+.+++|++.|+++|.+||||+|||++|.+.+|+|+|||||+|+++++.++++.+|+
T Consensus 6 ~~~~~~~~r-~ak~i~fg--~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~ 82 (550)
T KOG0356|consen 6 GRSQTKCVR-YAKDIKFG--KDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENI 82 (550)
T ss_pred cCCcccccc-cccccccC--HHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhh
Confidence 445555666 89999999 889999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcH-HHHHHhh
Q 010494 100 GVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAA 178 (509)
Q Consensus 100 ga~ll~~~a~~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~l~~va~ 178 (509)
||+|+++++.++++..||||||+++|++++.+++.+-+.+|.+|..|.+|+..+.+.+.+.|++++++++.. ++.+||+
T Consensus 83 gaklvq~va~~tN~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~eeIaqVAt 162 (550)
T KOG0356|consen 83 GAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTPEEIAQVAT 162 (550)
T ss_pred ccHHHHHHHhhccCccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987 9999999
Q ss_pred hhcCCchhhhhHHHHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCC
Q 010494 179 VSAGNDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKN 258 (509)
Q Consensus 179 ts~~~~~~l~~li~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~ 258 (509)
+|+|+|..+++++.+|+.++|++|+|.++.|.++.|++++++||.|++||+||||+++++.+.++|++|++++.+.+|++
T Consensus 163 iSAngD~~ig~li~~a~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~~ 242 (550)
T KOG0356|consen 163 ISANGDKEIGNLISDAMKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISS 242 (550)
T ss_pred hhcCCcHHHHHHHHHHHHHhCcCCeEEeecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccC-cc
Q 010494 259 PKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMG-LT 337 (509)
Q Consensus 259 ~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~-~~ 337 (509)
++++.|.++...+...||||+++||+.++|.+|+.|++++.++|+|||+|+||+.+++.+.|++.+||+.++.++++ ++
T Consensus 243 v~~ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~ 322 (550)
T KOG0356|consen 243 VQSIVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVFGEELSTLN 322 (550)
T ss_pred HHHHhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHHHHhhhhhhccchhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987 88
Q ss_pred ccCCCccccCcceEEEEecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhh
Q 010494 338 LDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVE 417 (509)
Q Consensus 338 ~~~~~~~~lG~~~~i~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~ 417 (509)
+++.++++||.|+++.+++++++++.+.++++++++||++++..++.+.++|+++++++|+++|++++++|.|||.|+.|
T Consensus 323 le~~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ls~gvavi~vGg~se~E 402 (550)
T KOG0356|consen 323 LEDAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKLSGGVAVIKVGGHSEVE 402 (550)
T ss_pred cccCchhhcCcceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEecCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Q 010494 418 LKDKQLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVV 497 (509)
Q Consensus 418 l~E~~~~~~dAl~a~~~al~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii 497 (509)
++|++++++||||++++|+++|+|||||+++++|+..|.++.. .++.+|+.|++++.+||..|.++|++|||.|+..++
T Consensus 403 v~ekk~rv~dalnat~aaveeGivpGGG~all~~~~~l~~lk~-~~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv 481 (550)
T KOG0356|consen 403 VNEKKDRVEDALNATRAAVEEGIVPGGGTALLRAIPVLDELKA-TNNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVV 481 (550)
T ss_pred hhhhhhhHHHHHHHHHHHhhcCcccCCchHHHHhhhhhhhccc-ccchHhhhhHHHHHHHHhhhHHHHHHhcCCchHHHH
Confidence 9999999999999999999999999999999999999998876 556777789999999999999999999999999999
Q ss_pred HHHhc
Q 010494 498 DQVSA 502 (509)
Q Consensus 498 ~~l~~ 502 (509)
.|++.
T Consensus 482 ~Kv~~ 486 (550)
T KOG0356|consen 482 EKVLN 486 (550)
T ss_pred HHHHh
Confidence 99984
No 13
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=1.6e-81 Score=680.11 Aligned_cols=400 Identities=25% Similarity=0.409 Sum_probs=368.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
+++++.|+.||..++++++|||||+||+|||+++.|+++|||||+||+|+|+++||. |+|++++|++||+++||||
T Consensus 15 ~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~qd~~~GDGT 90 (519)
T TIGR02339 15 RDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPA----AKMLVEVAKTQDAEVGDGT 90 (519)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHH----HHHHHHHHHHHHHHhCCCc
Confidence 789999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCc--H-HHHHHhhhhcCCc-------hhhhh
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVED--H-ELADVAAVSAGND-------YTVGK 189 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~--~-~l~~va~ts~~~~-------~~l~~ 189 (509)
||+++|+++|++++.+++++|+||+.|++||+.|.+.++++|++++++++. . .|.++|+|+++++ +.|++
T Consensus 91 tt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~~~~~ls~ 170 (519)
T TIGR02339 91 TTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTGKASAEVTKDKLAN 170 (519)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHhhhccccccchhHHHHHH
Confidence 999999999999999999999999999999999999999999999999864 3 7999999999875 78999
Q ss_pred HHHHHHHhhcc---CCc---------EEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeeccc--
Q 010494 190 MISDALQQVGR---NGV---------VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK-- 255 (509)
Q Consensus 190 li~~Ai~~v~~---~g~---------I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~-- 255 (509)
++++|+.++++ +|. |...+|++++|+ ++++|++|+++|.+| +|+++++||+|++++++
T Consensus 171 l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds-~lv~G~vi~~~~~~~-------~m~~~i~n~kIlll~~~Le 242 (519)
T TIGR02339 171 LVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDT-ELVEGIVVDKEPVHP-------GMPKRVKNAKIALLDAPLE 242 (519)
T ss_pred HHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcc-eeEeeEEEecCCCCC-------CCccccCCCcEEEEecccc
Confidence 99999999985 453 334799999998 999999999999987 47788999999999997
Q ss_pred -----------CCCHHHHHHHHH-----------HHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccC
Q 010494 256 -----------IKNPKDMFKILD-----------SAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGER 313 (509)
Q Consensus 256 -----------i~~~~~l~~~le-----------~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~ 313 (509)
+++++++.++++ ++.+.|+|||+++++|++.++++|..+ ++++|+ ++
T Consensus 243 ~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~------gI~~v~-----~v 311 (519)
T TIGR02339 243 VEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKA------GILAVR-----RV 311 (519)
T ss_pred ccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHC------CCEEEe-----cC
Confidence 678888877665 889999999999999999999999755 456665 67
Q ss_pred ccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEEEec---CeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHH
Q 010494 314 KSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITK---DSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQ 390 (509)
Q Consensus 314 ~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v~~---~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~ 390 (509)
++++|+|||++|||++++ ++++++++.||+|+.|++.+ ++|++|++|+++
T Consensus 312 ~~~~L~rIa~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~---------------------- 364 (519)
T TIGR02339 312 KKSDIEKLARATGAKIVS-----SIKEITESDLGYAGLVEERKVGDDKMTFVEGCKNP---------------------- 364 (519)
T ss_pred CHHHHHHHHHHhCCEEeC-----chhhCChhhccCCceEEEEEECCeEEEEEEcCCCC----------------------
Confidence 789999999999999999 58888889999999999754 899999998654
Q ss_pred HHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHH
Q 010494 391 KNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKI 469 (509)
Q Consensus 391 ~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~ 469 (509)
..+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|.+|+++++..++.+| +
T Consensus 365 -------------~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~-~ 430 (519)
T TIGR02339 365 -------------KAVTILLRGGTEHVVDELERSIQDALHVVASALEDGKVVAGGGAVEIELALRLRSYARKIGGREQ-L 430 (519)
T ss_pred -------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHH-H
Confidence 367999999999999999999999999999999999 9999999999999999998877778777 5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 470 GAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 470 ~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
++++|++||+.||++||+|||+|+.+++.+|++.
T Consensus 431 ~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~ 464 (519)
T TIGR02339 431 AIEAFADALEEIPRILAENAGLDPIDALVELRAK 464 (519)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 8999999999999999999999999999999753
No 14
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=9.1e-81 Score=674.55 Aligned_cols=403 Identities=25% Similarity=0.394 Sum_probs=370.6
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhh
Q 010494 35 YFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDL 114 (509)
Q Consensus 35 ~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~ 114 (509)
.+| +++++.|+.||..++++|++||||+||+|||+++.|+++|||||+||+++|+++||. |+|++++|++||++
T Consensus 11 ~~~--~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~q~~~ 84 (517)
T cd03343 11 TSG--RDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPA----AKMLVEVAKTQDEE 84 (517)
T ss_pred ccH--HHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHH----HHHHHHHHHHHHHH
Confidence 446 789999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred cCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC--cH-HHHHHhhhhcCCc------h
Q 010494 115 AGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE--DH-ELADVAAVSAGND------Y 185 (509)
Q Consensus 115 ~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~-~l~~va~ts~~~~------~ 185 (509)
+||||||+++|+++|++++.+++++|+||..|++||++|.+.++++|++++++++ +. .|.++|++|++++ +
T Consensus 85 ~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~~~ 164 (517)
T cd03343 85 VGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAAKD 164 (517)
T ss_pred hCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhhcccchhhHHH
Confidence 9999999999999999999999999999999999999999999999999999986 44 8999999999876 8
Q ss_pred hhhhHHHHHHHhhccCCc---------EEE--ecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecc
Q 010494 186 TVGKMISDALQQVGRNGV---------VTI--EKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDK 254 (509)
Q Consensus 186 ~l~~li~~Ai~~v~~~g~---------I~v--~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~ 254 (509)
.|++++++|+.++++++. |++ .+|++++|+ ++++|++|+++|.+|+| ++.++||+|+++++
T Consensus 165 ~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds-~lv~G~v~~~~~~~~~m-------~~~~~n~~Illl~~ 236 (517)
T cd03343 165 KLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDT-ELIRGIVIDKEVVHPGM-------PKRVENAKIALLDA 236 (517)
T ss_pred HHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHc-ceeeeEEEeccCCCCCC-------ccccCCCcEEEEec
Confidence 999999999999987532 554 799999998 99999999999999874 56789999999999
Q ss_pred c-------------CCCHHHHHHH-----------HHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCccc
Q 010494 255 K-------------IKNPKDMFKI-----------LDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAF 310 (509)
Q Consensus 255 ~-------------i~~~~~l~~~-----------le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~ 310 (509)
+ +++++++.++ ++++.+.|+||||++++|++.++++|..+ ++++|+
T Consensus 237 ~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~------gI~~v~---- 306 (517)
T cd03343 237 PLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKA------GILAVR---- 306 (517)
T ss_pred cccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHC------CcEEEE----
Confidence 8 5777777665 44889999999999999999999999765 467776
Q ss_pred ccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEEEe---cCeEEEEecCCChhHHHHHHHHHHHHHhhhhH
Q 010494 311 GERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT---KDSTLIVTDGSTRAAVEKRISEIRSLAEITEE 387 (509)
Q Consensus 311 ~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v~---~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~ 387 (509)
++++++|+|||++|||++++ +++++++++||+|+.|++. +++|++|++|+++
T Consensus 307 -~v~~~~l~~Ia~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~------------------- 361 (517)
T cd03343 307 -RVKKSDMEKLARATGAKIVT-----NIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNP------------------- 361 (517)
T ss_pred -eCCHHHHHHHHHHhCCEEec-----chhhCChhhCCccceEEEEEECCeEEEEEEcCCCC-------------------
Confidence 67789999999999999999 6889999999999999975 7899999998765
Q ss_pred HHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHH
Q 010494 388 RFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEE 466 (509)
Q Consensus 388 ~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~ 466 (509)
..+||+|||+|+.+++|++|+++||++++|+++++| +|||||++|++++..|++++...++.+
T Consensus 362 ----------------~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~L~~~~~~~~~~~ 425 (517)
T cd03343 362 ----------------KAVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYARSVGGRE 425 (517)
T ss_pred ----------------ceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHHHHHHHHHHHhcCCCHH
Confidence 367999999999999999999999999999999999 999999999999999999877777877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 467 QKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 467 q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
| +++++|++||+.||++|++|||+|+.+++.+|++.
T Consensus 426 ~-~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~ 461 (517)
T cd03343 426 Q-LAVEAFADALEEIPRTLAENAGLDPIDTLVELRAA 461 (517)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 7 58999999999999999999999999999999854
No 15
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.4e-80 Score=671.56 Aligned_cols=400 Identities=21% Similarity=0.338 Sum_probs=361.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
++++..|+.+|..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ ++|++++|++||+++||||
T Consensus 15 ~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~----a~ll~~~a~~qd~~~GDGT 90 (531)
T TIGR02347 15 DAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPT----ASMIARAATAQDDITGDGT 90 (531)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChH----HHHHHHHHHHhhhhhcCcH
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCccc---CcH-HHHHHhhhhcCC------chhhhh
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREV---EDH-ELADVAAVSAGN------DYTVGK 189 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v---~~~-~l~~va~ts~~~------~~~l~~ 189 (509)
||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++++ .+. .|.++|+|++++ ++.|++
T Consensus 91 TtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~ 170 (531)
T TIGR02347 91 TSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRELLLNVARTSLRTKLPIDLADQLTE 170 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999764 344 899999999876 689999
Q ss_pred HHHHHHHhhccCCc------EE--EecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCC---
Q 010494 190 MISDALQQVGRNGV------VT--IEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKN--- 258 (509)
Q Consensus 190 li~~Ai~~v~~~g~------I~--v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~--- 258 (509)
++++|+..+++++. |. ..+|++..|+ ++++|++|+++|.+|+ |+++++||+|+++|++++.
T Consensus 171 iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~~ds-~~v~Giv~~~~~~~~~-------~~~~~~n~~Ill~~~~le~~~~ 242 (531)
T TIGR02347 171 IVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATDT-TLIRGLVLDHGARHPD-------MPRRVKNAYILTCNVSLEYEKT 242 (531)
T ss_pred HHHHHHHHHhhcCCCCChhHeEEEEecCCCcccc-EEEeeEEEecCcCCCC-------CceeccCceEEEEeCCCCCCcc
Confidence 99999999987653 33 3578899998 9999999999999987 4678999999999997642
Q ss_pred ----------HHHH-----------HHHHHHHHhcCC-------C---eEEEeccchHHHHHHHHHhcccccceeeeecC
Q 010494 259 ----------PKDM-----------FKILDSAVKEKY-------P---IVIVAEDIEQQALALLIRNKLRGVLKAAAIKA 307 (509)
Q Consensus 259 ----------~~~l-----------~~~le~i~~~~~-------~---lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~ 307 (509)
++++ ...++++.+.+. + +|+++++|++.++++|..+ +|++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~------~I~~i~- 315 (531)
T TIGR02347 243 EVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKE------GIMALR- 315 (531)
T ss_pred ccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHC------CceEEc-
Confidence 3333 334566766551 4 8999999999999999876 478876
Q ss_pred cccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceEE---EEecCeEEEEecCCChhHHHHHHHHHHHHHhh
Q 010494 308 PAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKV---VITKDSTLIVTDGSTRAAVEKRISEIRSLAEI 384 (509)
Q Consensus 308 ~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i---~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~ 384 (509)
++++++|+|||++|||++++ +++++++++||+|+.| ++++++|++|++|+++
T Consensus 316 ----rv~~~~le~ia~~tGa~~i~-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~---------------- 370 (531)
T TIGR02347 316 ----RAKRRNMERLTLACGGEALN-----SVEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNP---------------- 370 (531)
T ss_pred ----cCCHHHHHHHHHHhCCEEec-----ccccCCccccccceEEEEEEECCeEEEEEEcCCCC----------------
Confidence 56688999999999999998 6899999999999999 5678899999998765
Q ss_pred hhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCC
Q 010494 385 TEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLD 463 (509)
Q Consensus 385 ~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~ 463 (509)
+++||+|||+|+.+++|++|+++||++++++++++| +|||||++|+++|.+|+++++..+
T Consensus 371 -------------------~~~TI~lrG~t~~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~ 431 (531)
T TIGR02347 371 -------------------KSCTILIKGPNDHTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVK 431 (531)
T ss_pred -------------------CeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCC
Confidence 478999999999999999999999999999999999 999999999999999999987777
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 464 NEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 464 ~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
+.+|. ++++|++||++||++||+|||+|+.+++.+|++.
T Consensus 432 ~~~~~-~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~ 470 (531)
T TIGR02347 432 GKAKL-GVEAFANALLVIPKTLAENSGLDAQDTLVKLEDE 470 (531)
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 87874 8999999999999999999999999999999764
No 16
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.6e-81 Score=669.94 Aligned_cols=395 Identities=22% Similarity=0.353 Sum_probs=361.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
.+++..|+.+|..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ ++|++++|++||+++||||
T Consensus 11 ~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~----a~l~~~~a~~qd~~~GDGT 86 (484)
T cd03342 11 GQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPT----ASMIARAATAQDDITGDGT 86 (484)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHH----HHHHHHHHHHhhhHhCCCh
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC---cH-HHHHHhhhhcCCc------hhhhh
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE---DH-ELADVAAVSAGND------YTVGK 189 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~---~~-~l~~va~ts~~~~------~~l~~ 189 (509)
||+++|+++|++++.++++.|+||..|++||++|.+.++++|++++++++ +. .+.++|++|++++ +.|++
T Consensus 87 Tt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~l~~ 166 (484)
T cd03342 87 TSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADLADQLTE 166 (484)
T ss_pred hhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCcccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 55 8999999999875 89999
Q ss_pred HHHHHHHhhccCC-c-------EEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHH
Q 010494 190 MISDALQQVGRNG-V-------VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKD 261 (509)
Q Consensus 190 li~~Ai~~v~~~g-~-------I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~ 261 (509)
++++|+..+++++ . |...+|+++.|+ ++++|++|+++|.+|+ |+++++||+|+++|++++..++
T Consensus 167 l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~~ds-~~i~G~~~~~~~~~~~-------m~~~~~n~~Ill~~~~le~~~~ 238 (484)
T cd03342 167 IVVDAVLAIYKPDEPIDLHMVEIMQMQHKSDSDT-KLIRGLVLDHGARHPD-------MPKRVENAYILTCNVSLEYEKT 238 (484)
T ss_pred HHHHHHHHHhhcCCccChhHeEEEEecCCChhhc-eEEeeEEEecCCCCCC-------CCccccCceEEEEeCCCCCCcc
Confidence 9999999998865 2 334589999998 9999999999999987 4678999999999999987644
Q ss_pred HHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCC
Q 010494 262 MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKA 341 (509)
Q Consensus 262 l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~ 341 (509)
-.+ ...-.+|||++++|++.++++|..| +|+||+ ++++++|+|||++|||++++ +++++
T Consensus 239 ~~~-----~~~~~~lvi~~~~I~~~al~~l~~~------~I~av~-----~~~~~~l~~ia~~tGa~ii~-----~l~~~ 297 (484)
T cd03342 239 EVN-----SGFFYSVVINQKGIDPPSLDMLAKE------GILALR-----RAKRRNMERLTLACGGVAMN-----SVDDL 297 (484)
T ss_pred ccC-----cEEEEEEEEeCCCccHHHHHHHHHC------CCeEEE-----eCCHHHHHHHHHHhCCEEec-----ccccC
Confidence 111 1112469999999999999999888 378887 56788999999999999999 68999
Q ss_pred CccccCcceEE---EEecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhH
Q 010494 342 GKEVLGTAIKV---VITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVEL 418 (509)
Q Consensus 342 ~~~~lG~~~~i---~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l 418 (509)
++++||+|+.+ ++++++|++|++|+++ +++||+|||+|+.++
T Consensus 298 ~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~-----------------------------------~~~tI~lrg~t~~~l 342 (484)
T cd03342 298 SPECLGYAGLVYERTLGEEKYTFIEGVKNP-----------------------------------KSCTILIKGPNDHTI 342 (484)
T ss_pred ChhhCcccceEEEEEECCeEEEEEECCCCC-----------------------------------cEEEEEEeCCCHHHH
Confidence 99999999999 4678899999998765 588999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Q 010494 419 KDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVV 497 (509)
Q Consensus 419 ~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii 497 (509)
+|.+|+++||++++++++++| +||||||+|++++.+|+++++..++++| +++++|++||+.||++||+|||+|+.+++
T Consensus 343 ~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~~~~~~~-~~i~~~a~Al~~ip~~La~NaG~d~~~~l 421 (484)
T cd03342 343 TQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAK-LGVQAFADALLVIPKTLAENSGLDVQETL 421 (484)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 999999999999999999999 9999999999999999999877778777 58999999999999999999999999999
Q ss_pred HHHhcc
Q 010494 498 DQVSAH 503 (509)
Q Consensus 498 ~~l~~~ 503 (509)
.+|++.
T Consensus 422 ~~l~~~ 427 (484)
T cd03342 422 VKLQDE 427 (484)
T ss_pred HHHHHH
Confidence 999754
No 17
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.4e-80 Score=670.33 Aligned_cols=404 Identities=25% Similarity=0.372 Sum_probs=365.3
Q ss_pred hccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhh
Q 010494 34 VYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTND 113 (509)
Q Consensus 34 i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~ 113 (509)
..|| +++++.|+.||..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+
T Consensus 18 ~~~~--~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~----akll~~~a~~q~~ 91 (526)
T cd03339 18 RLKG--LEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQI----AKLLVELSKSQDD 91 (526)
T ss_pred cccH--HHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHH----HHHHHHHHHhhhh
Confidence 4557 899999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC----cH-HHHHHhhhhcCCc----
Q 010494 114 LAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE----DH-ELADVAAVSAGND---- 184 (509)
Q Consensus 114 ~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~----~~-~l~~va~ts~~~~---- 184 (509)
++||||||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|++++++++ +. .|.++|+|+++++
T Consensus 92 ~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~tsl~sk~~~~ 171 (526)
T cd03339 92 EIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSKIVSR 171 (526)
T ss_pred hhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHhhcccchhh
Confidence 99999999999999999999999999999999999999999999999999999886 23 7999999998853
Q ss_pred --hhhhhHHHHHHHhhccC-------Cc--EEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeec
Q 010494 185 --YTVGKMISDALQQVGRN-------GV--VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVD 253 (509)
Q Consensus 185 --~~l~~li~~Ai~~v~~~-------g~--I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d 253 (509)
+.|++++++|+..+... .. |...+|++++|| ++++|++|+++|.+|+| ++.++||||++++
T Consensus 172 ~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS-~~v~Givi~~~~~~~~m-------~~~~~n~kI~ll~ 243 (526)
T cd03339 172 CHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDT-KLVKGIVIDKDFSHPQM-------PKEVKDAKIAILT 243 (526)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHc-ceeeeEEEecccCCCCC-------CceecCCCEEEEE
Confidence 78999999999988531 12 344699999999 99999999999999874 5677899999988
Q ss_pred cc-------------CCCHHH-----------HHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcc
Q 010494 254 KK-------------IKNPKD-----------MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPA 309 (509)
Q Consensus 254 ~~-------------i~~~~~-----------l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~ 309 (509)
++ ++++++ +.++++++.+.|+||||++++|++.++++|..|+ +.||++
T Consensus 244 ~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~------I~av~~-- 315 (526)
T cd03339 244 CPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNG------LPAVRW-- 315 (526)
T ss_pred ecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCC------CEEEEe--
Confidence 64 456666 5667889999999999999999999999998885 568874
Q ss_pred cccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEEE---e--cCeEEEEecCCChhHHHHHHHHHHHHHhh
Q 010494 310 FGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVI---T--KDSTLIVTDGSTRAAVEKRISEIRSLAEI 384 (509)
Q Consensus 310 ~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v---~--~~~~~~~~g~~~~~~i~~ri~~l~~~~~~ 384 (509)
+++++|+|||++|||++++ ++++++++.+|+|+.|++ + +++++||+||+++
T Consensus 316 ---v~~~~LerIa~~tGa~ii~-----~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~---------------- 371 (526)
T cd03339 316 ---VGGVEIELIAIATGGRIVP-----RFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNS---------------- 371 (526)
T ss_pred ---CCHHHHHHHHHHhCCEEec-----chhhCChhhcccCceEEEEEecCCCcEEEEEECCCCC----------------
Confidence 4567899999999999999 689999999999999984 2 4688999998754
Q ss_pred hhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCC
Q 010494 385 TEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLD 463 (509)
Q Consensus 385 ~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~ 463 (509)
+.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|+++|..|++++...+
T Consensus 372 -------------------~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~ 432 (526)
T cd03339 372 -------------------KAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAADKCS 432 (526)
T ss_pred -------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHHHHHHHHHHhccCC
Confidence 578999999999999999999999999999999998 999999999999999999887777
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 464 NEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 464 ~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
+.+| +++++|++||+.||++||+|||+|+.+++++|++.
T Consensus 433 ~~~~-~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~ 471 (526)
T cd03339 433 GIEQ-YAMRAFADALESIPLALAENSGLNPIETLSEVKAR 471 (526)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 8777 58999999999999999999999999999999743
No 18
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.6e-80 Score=671.38 Aligned_cols=405 Identities=24% Similarity=0.342 Sum_probs=364.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
+++|+.|++||..|+++|++||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 7 ~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~----akll~~~a~~q~~~~GDGT 82 (527)
T cd03335 7 QDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPA----AKILVELAQLQDKEVGDGT 82 (527)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChH----HHHHHHHHHHHHHHhCCCc
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHh-cCcccC--cH-HHHHHhhhhcCC------chhhhh
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKL-TSREVE--DH-ELADVAAVSAGN------DYTVGK 189 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~-~s~~v~--~~-~l~~va~ts~~~------~~~l~~ 189 (509)
||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|++ ++++++ +. .|.++|+|++++ .+.|++
T Consensus 83 Tt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~ 162 (527)
T cd03335 83 TSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFAN 162 (527)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHHH
Confidence 99999999999999999999999999999999999999999996 899986 44 799999999873 389999
Q ss_pred HHHHHHHhhcc---CCc---------EEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCC
Q 010494 190 MISDALQQVGR---NGV---------VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIK 257 (509)
Q Consensus 190 li~~Ai~~v~~---~g~---------I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~ 257 (509)
++++|+..++. +|. |...+|++++|+ ++++|++|+++|.+| +|++.++||+|++++++++
T Consensus 163 l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s-~li~Givi~~~~~~~-------~m~~~i~n~kIlll~~~Le 234 (527)
T cd03335 163 MVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKES-YLVNGYALNCTRASQ-------GMPTRVKNAKIACLDFNLQ 234 (527)
T ss_pred HHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhc-ceeeeEEEecccCCC-------CCcccccCCcEEEEeccCC
Confidence 99999999952 232 235689999998 999999999999987 4788999999999999764
Q ss_pred C-------------HHHH-----------HHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccC
Q 010494 258 N-------------PKDM-----------FKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGER 313 (509)
Q Consensus 258 ~-------------~~~l-----------~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~ 313 (509)
. ++++ .++++++.+.|+||||++++|++.++++|..+ +|++++ ++
T Consensus 235 ~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~------~I~~v~-----~v 303 (527)
T cd03335 235 KTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEA------GAMAVR-----RV 303 (527)
T ss_pred CCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHC------CcEEEE-----eC
Confidence 3 2332 34577888999999999999999999999887 467776 67
Q ss_pred ccchHHHHHHHhCCeeeecccCc-cccCCCccccCcceEEE---EecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHH
Q 010494 314 KSHYLDDIAILTGGLVIRDEMGL-TLDKAGKEVLGTAIKVV---ITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERF 389 (509)
Q Consensus 314 ~~~~L~~ia~~tG~~ii~~~~~~-~~~~~~~~~lG~~~~i~---v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~ 389 (509)
++++|+|||++|||+++++..++ ..+++++++||+|+.++ +++++|++|+||+++
T Consensus 304 ~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~~--------------------- 362 (527)
T cd03335 304 KKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKR--------------------- 362 (527)
T ss_pred CHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCCC---------------------
Confidence 78999999999999999964333 12345667899999999 678899999998653
Q ss_pred HHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHH
Q 010494 390 QKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQK 468 (509)
Q Consensus 390 ~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~ 468 (509)
+++||+|||+|+.+++|.+|+++||++++++++++| +|||||++|++++.+|+++++..++.+|
T Consensus 363 --------------~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~- 427 (527)
T cd03335 363 --------------SSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQ- 427 (527)
T ss_pred --------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHH-
Confidence 589999999999999999999999999999999999 9999999999999999999877778787
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 469 IGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 469 ~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
+++++|++||+.||++||+|||+|+.+++.+|++.
T Consensus 428 ~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~ 462 (527)
T cd03335 428 LAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAY 462 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999764
No 19
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.4e-80 Score=668.31 Aligned_cols=399 Identities=26% Similarity=0.394 Sum_probs=362.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
+++++.|++||..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 26 ~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~----akll~~~a~~qd~~~GDGT 101 (532)
T TIGR02343 26 LEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPI----AKLMVELSKSQDDEIGDGT 101 (532)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHH----HHHHHHHHHHHHHHhcCCc
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCc----H-HHHHHhhhhcCC------chhhh
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVED----H-ELADVAAVSAGN------DYTVG 188 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~----~-~l~~va~ts~~~------~~~l~ 188 (509)
||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++++++ . .|.++|+|++++ .+.|+
T Consensus 102 ttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls 181 (532)
T TIGR02343 102 TGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQAAKTSLGSKIVSKCHRRFA 181 (532)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhhccchhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999998753 3 799999999875 36799
Q ss_pred hHHHHHHHhhccC--C-----c--EEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeeccc----
Q 010494 189 KMISDALQQVGRN--G-----V--VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK---- 255 (509)
Q Consensus 189 ~li~~Ai~~v~~~--g-----~--I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~---- 255 (509)
+++++|+..+... + . |...+|++++|+ ++++|++|+++|.+|+ |++.++||||++++++
T Consensus 182 ~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds-~~v~Gi~i~~~~~~~~-------m~~~~~n~kI~l~~~~le~~ 253 (532)
T TIGR02343 182 EIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDT-KLIKGIIIDKDFSHPQ-------MPKEVKDAKIAILTCPFEPP 253 (532)
T ss_pred HHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccc-eeEeeEEEecCcCCCC-------CCeeecCCcEEEEEeecccc
Confidence 9999999988531 1 2 344699999999 9999999999999986 4667889999998864
Q ss_pred ---------CCCHHHH-----------HHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCcc
Q 010494 256 ---------IKNPKDM-----------FKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKS 315 (509)
Q Consensus 256 ---------i~~~~~l-----------~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~ 315 (509)
+++++++ .++++++.+.|+||||++++|++.++++|..|+ +.+|+ ++++
T Consensus 254 ~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~------i~~v~-----~~~~ 322 (532)
T TIGR02343 254 KPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQND------LPAVR-----WVGG 322 (532)
T ss_pred ccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCC------cEEEE-----cCCH
Confidence 4666666 667899999999999999999999999998885 56777 4456
Q ss_pred chHHHHHHHhCCeeeecccCccccCCCccccCcceEEEEe-----cCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHH
Q 010494 316 HYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT-----KDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQ 390 (509)
Q Consensus 316 ~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v~-----~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~ 390 (509)
++|+|||++|||++++ +++++++++||+|+.|+.. .++++++++|+++
T Consensus 323 ~~l~~Ia~~tGa~~i~-----~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~---------------------- 375 (532)
T TIGR02343 323 HELELIAIATGGRIVP-----RFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNS---------------------- 375 (532)
T ss_pred HHHHHHHHHhCCEEec-----ccccCCHhHCcccceEEEEEecCCcceEEEEECCCCC----------------------
Confidence 7899999999999999 6899999999999999842 2578999998765
Q ss_pred HHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHH
Q 010494 391 KNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKI 469 (509)
Q Consensus 391 ~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~ 469 (509)
.++||+|||+|+.+++|.+|+++||+++++++++++ +|||||++|+++|++|++++...++.+| +
T Consensus 376 -------------~~~TIllrG~t~~~l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~-~ 441 (532)
T TIGR02343 376 -------------KAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQ-Y 441 (532)
T ss_pred -------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHH-H
Confidence 378999999999999999999999999999999996 9999999999999999998877778887 5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhc
Q 010494 470 GAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSA 502 (509)
Q Consensus 470 ~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~ 502 (509)
++++|++||+.||++||+|||+|+.+++.+|++
T Consensus 442 ~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~ 474 (532)
T TIGR02343 442 AIRAFADALEEIPMALAENSGLDPIGTLSDLKS 474 (532)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 899999999999999999999999999999975
No 20
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-81 Score=613.30 Aligned_cols=420 Identities=21% Similarity=0.329 Sum_probs=385.1
Q ss_pred CCcceEEecCCCCCCCCCCCCCcccccchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccch
Q 010494 4 LSTPIFAISFKNPTLPKRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDG 83 (509)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG 83 (509)
|..||++++|+++.+|+..| .-+|+.+|..+++.++|||||+|+||+|++..|+.+|+|||
T Consensus 2 m~~~ii~lkegtd~sqGk~Q-------------------lvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDG 62 (543)
T KOG0361|consen 2 MQPPIILLKEGTDPSQGKGQ-------------------LVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDG 62 (543)
T ss_pred CCCCEEEeecccCcccCchh-------------------hhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCc
Confidence 78999999999999997766 67899999999999999999999999999999999999999
Q ss_pred hhhhccccccCcccchHhHHHHHHHHhhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHh
Q 010494 84 ETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKL 163 (509)
Q Consensus 84 ~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~ 163 (509)
+||+|.+++-||+ |+.++++|++||.++||||||||+|++++|+++..+++.|+||..|+++|++|...+++.|++
T Consensus 63 ATIlKlldivhPa----aktlVdia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~e 138 (543)
T KOG0361|consen 63 ATILKLLDIVHPA----AKTLVDIARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKE 138 (543)
T ss_pred HHHHHHHhhcChh----HHHHHHHHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCc--H-----HHHHHhhhhcCC------chhhhhHHHHHHHhhccC---Cc--EEEecCCCcccceEEeeceEEe
Q 010494 164 TSREVED--H-----ELADVAAVSAGN------DYTVGKMISDALQQVGRN---GV--VTIEKGKCTENSLEIVEGMRFD 225 (509)
Q Consensus 164 ~s~~v~~--~-----~l~~va~ts~~~------~~~l~~li~~Ai~~v~~~---g~--I~v~~g~~~~ds~~li~Gi~~~ 225 (509)
+++.++. + .|++.|.|++++ +++|+++++||+..++.+ +. |++.+||+++|| .+++|+.|+
T Consensus 139 lav~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS-~lv~GVAFk 217 (543)
T KOG0361|consen 139 LAVEIDGSSKTELRELLEKCAATALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDS-LLVNGVAFK 217 (543)
T ss_pred heeEecccchhhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccchh-hhccceeee
Confidence 9998872 1 688999998865 589999999999999853 11 677899999999 799999999
Q ss_pred ccCCCCccccCcCCceeEeeceeeEeeccc-------------CCCHHHHHHH-----------HHHHHhcCCCeEEEec
Q 010494 226 RGFLSPYFVTDRQKRTVEFHDGKLLLVDKK-------------IKNPKDMFKI-----------LDSAVKEKYPIVIVAE 281 (509)
Q Consensus 226 ~~~~~p~~~~~~~~~~~~~~~~kIll~d~~-------------i~~~~~l~~~-----------le~i~~~~~~lvi~~~ 281 (509)
+.|.+..|. .+|+.+.||||+++|-. +.++++++.+ |+++..+|.|+|+..-
T Consensus 218 KtFsYAGfE----qqPKk~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkL 293 (543)
T KOG0361|consen 218 KTFSYAGFE----QQPKKFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKL 293 (543)
T ss_pred ehccccchh----hCccccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecc
Confidence 999998874 56779999999999853 5667776653 6788999999999999
Q ss_pred cchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEE---EecCe
Q 010494 282 DIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVV---ITKDS 358 (509)
Q Consensus 282 ~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~---v~~~~ 358 (509)
.|.|.|.++|....+ . +.|++..++|.|+..+|||++.+ +..++.++.||.|..++ +++++
T Consensus 294 pIGD~ATQyFAdrdi------F-----CAGRV~~eDl~Rv~~acGGsi~t-----t~~~i~~~~LG~C~~FeE~QvG~eR 357 (543)
T KOG0361|consen 294 PIGDLATQYFADRDI------F-----CAGRVPEEDLNRVMQACGGSIQT-----TVSDIKEEVLGTCALFEERQVGGER 357 (543)
T ss_pred cchHHHHHHhhccCc------e-----ecCcCCHHHHHHHHHhcCcchhh-----hhhhcchhhcchhhhHHHHhhcchh
Confidence 999999999876643 3 45789999999999999999999 57888999999999997 57899
Q ss_pred EEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhh
Q 010494 359 TLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEE 438 (509)
Q Consensus 359 ~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~ 438 (509)
|.+|+||+.. +.||+++||+.+..++|.+|++|||++++|.|+++
T Consensus 358 yN~Fegcp~a-----------------------------------ktcTliLRGgaeqfieE~eRSlHDAImIVrralkn 402 (543)
T KOG0361|consen 358 YNLFEGCPKA-----------------------------------KTCTLILRGGAEQFIEETERSLHDAIMIVRRALKN 402 (543)
T ss_pred hhhhcCCCcc-----------------------------------ceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhcc
Confidence 9999999754 48999999999999999999999999999999999
Q ss_pred C-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 439 G-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 439 g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
. ||+|||++||++|+.|++++.++.+++|. .+.+|++|||.||++||+|+|+|...++.||+..
T Consensus 403 ~~vVaGGGaiEMElSk~lRd~S~ti~gK~q~-~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~r 467 (543)
T KOG0361|consen 403 DSVVAGGGAIEMELSKYLRDYSRTIAGKQQL-FINAYAKALEVIPRQLCDNAGFDATNILNKLRQR 467 (543)
T ss_pred CcEeeCCceeeehHHHHHHHhhcccCcHHHH-HHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHH
Confidence 7 99999999999999999999999999986 5999999999999999999999999999999865
No 21
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8.3e-80 Score=667.55 Aligned_cols=400 Identities=21% Similarity=0.298 Sum_probs=364.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
++++..|+.+|..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 15 ~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~----akll~~~a~~q~~~~GDGT 90 (525)
T TIGR02344 15 RKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPA----AKSMIELSRTQDEEVGDGT 90 (525)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHH----HHHHHHHHHhhhhhccCCc
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC--cH-HHHHHhhhhcCC------chhhhhH
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE--DH-ELADVAAVSAGN------DYTVGKM 190 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~-~l~~va~ts~~~------~~~l~~l 190 (509)
||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|++++++++ +. .|.++|+|++++ ++.|+++
T Consensus 91 tt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l 170 (525)
T TIGR02344 91 TSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDL 170 (525)
T ss_pred chhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 33 799999888765 5899999
Q ss_pred HHHHHHhhccCC-----------c--EEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCC
Q 010494 191 ISDALQQVGRNG-----------V--VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIK 257 (509)
Q Consensus 191 i~~Ai~~v~~~g-----------~--I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~ 257 (509)
+++|+..+++++ . |...+|++++|| ++++|++|++++.++ +|+.+++||+|++++++++
T Consensus 171 ~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS-~lv~Gvvi~k~~~~~-------~m~~~~~n~kIlll~~~Le 242 (525)
T TIGR02344 171 ALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDS-CVLKGVMINKDVTHP-------KMRRYIENPRIVLLDCPLE 242 (525)
T ss_pred HHHHHHHhhccccCCCCccChhhceEEEEecCCChHhc-CcccceEEecccCCC-------CCccccCCCCEEEEecccc
Confidence 999999998653 1 334579999998 999999999997765 4788999999999999764
Q ss_pred C-------------HHHHHHHHH-----------HHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccC
Q 010494 258 N-------------PKDMFKILD-----------SAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGER 313 (509)
Q Consensus 258 ~-------------~~~l~~~le-----------~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~ 313 (509)
. ++++.++++ ++.+.|++||++++.|++.++++|..+ +|+|++ ++
T Consensus 243 ~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~------~I~av~-----~v 311 (525)
T TIGR02344 243 YKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKA------NISAIR-----RV 311 (525)
T ss_pred cccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHC------CceEEe-----cC
Confidence 3 466666544 788899999999999999999988665 578765 78
Q ss_pred ccchHHHHHHHhCCeeeecccCccccCCCccccCc-ceEEEE---ecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHH
Q 010494 314 KSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGT-AIKVVI---TKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERF 389 (509)
Q Consensus 314 ~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~-~~~i~v---~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~ 389 (509)
++++|+|||++|||++++ ++++++++++|+ |+.+++ ++++|++|+||+++
T Consensus 312 ~~~~LerIa~~tGa~ii~-----~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~--------------------- 365 (525)
T TIGR02344 312 RKTDNNRIARACGATIVN-----RPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDP--------------------- 365 (525)
T ss_pred CHHHHHHHHHHhCCeEec-----chhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCC---------------------
Confidence 899999999999999999 688899999999 998987 56889999998765
Q ss_pred HHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHH
Q 010494 390 QKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQK 468 (509)
Q Consensus 390 ~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~ 468 (509)
.++||+|||+|+.+++|++|+++||+++++++++++ +|||||++|+++|.+|+++++..++.+|
T Consensus 366 --------------~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~- 430 (525)
T TIGR02344 366 --------------KACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQ- 430 (525)
T ss_pred --------------CEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHH-
Confidence 478999999999999999999999999999999996 9999999999999999998877788887
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 469 IGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 469 ~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
+++++|++||+.||++||+|||+|+.+++.+|++.
T Consensus 431 ~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~ 465 (525)
T TIGR02344 431 WPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAK 465 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999874
No 22
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.7e-79 Score=664.78 Aligned_cols=403 Identities=22% Similarity=0.346 Sum_probs=367.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
.+++..|+.+|..|+++|++||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 15 ~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~----akll~~~a~~q~~~~GDGT 90 (522)
T cd03340 15 KGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPA----AKTLVDIAKSQDAEVGDGT 90 (522)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHH----HHHHHHHHHHhHhHhCCCh
Confidence 679999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCc------H-HHHHHhhhhcC------Cchh
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVED------H-ELADVAAVSAG------NDYT 186 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~------~-~l~~va~ts~~------~~~~ 186 (509)
||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++++++ . .|.++|+++++ +++.
T Consensus 91 tt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ 170 (522)
T cd03340 91 TSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEF 170 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCcchhHHHH
Confidence 999999999999999999999999999999999999999999999998864 3 69999999987 4689
Q ss_pred hhhHHHHHHHhhccCC---c--EEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccC-----
Q 010494 187 VGKMISDALQQVGRNG---V--VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI----- 256 (509)
Q Consensus 187 l~~li~~Ai~~v~~~g---~--I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i----- 256 (509)
|++++++|+.++++++ . |...+|++++|+ ++++|++|+++|.+|+|. +|++.++||+|+++++++
T Consensus 171 l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~ds-~lv~Giv~~k~~~~~~~~----~~~~~~~n~kIll~~~~Le~~~~ 245 (522)
T cd03340 171 FAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLEDS-QLVNGVAFKKTFSYAGFE----QQPKKFKNPKILLLNVELELKAE 245 (522)
T ss_pred HHHHHHHHHHHhcccCChhHheEeeecCCChhhc-eeeeeEEEecccCccccc----cCCccccCCeEEEEeCCCCCCcc
Confidence 9999999999998765 2 333589999999 899999999999999864 356779999999999873
Q ss_pred --------CCHHH-----------HHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccch
Q 010494 257 --------KNPKD-----------MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHY 317 (509)
Q Consensus 257 --------~~~~~-----------l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~ 317 (509)
+++.+ +.+.++.+.+.|+++|+++++|++.++++|..++ |++++ ++++++
T Consensus 246 ~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~------I~~~~-----~v~~~~ 314 (522)
T cd03340 246 KDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRD------IFCAG-----RVPEED 314 (522)
T ss_pred ccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCC------cEEEE-----eCCHHH
Confidence 45544 3456778889999999999999999999998774 56665 667889
Q ss_pred HHHHHHHhCCeeeecccCccccCCCccccCcceEEE---EecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHH
Q 010494 318 LDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVV---ITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNIL 394 (509)
Q Consensus 318 L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~---v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l 394 (509)
|+|||++|||++++ +++++++++||+|+.++ ++++++++|.+|+.+
T Consensus 315 l~rIa~~tGa~ii~-----~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-------------------------- 363 (522)
T cd03340 315 LKRVAQATGGSIQT-----TVSNITDDVLGTCGLFEERQVGGERYNIFTGCPKA-------------------------- 363 (522)
T ss_pred HHHHHHHHCCEEee-----ccccCCccccccceEEEEEEECCEEEEEEECCCCC--------------------------
Confidence 99999999999999 58899999999999998 567899999998654
Q ss_pred HHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHH
Q 010494 395 NERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEI 473 (509)
Q Consensus 395 ~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~ 473 (509)
..+||++||+|+..++|.+|+++||++++++++++| +|||||++|++++.+|+++++...+++|. ++++
T Consensus 364 ---------~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~-~~~~ 433 (522)
T cd03340 364 ---------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQL-VINA 433 (522)
T ss_pred ---------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHH-HHHH
Confidence 478999999999999999999999999999999998 99999999999999999988777777774 8999
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 474 FKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 474 ~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
|++||+.||++|++|||+|+.+++.+|++.
T Consensus 434 fa~aL~~ip~~La~NaG~d~~~~l~~l~~~ 463 (522)
T cd03340 434 FAKALEIIPRQLCDNAGFDATDILNKLRQK 463 (522)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999874
No 23
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.5e-79 Score=666.36 Aligned_cols=404 Identities=24% Similarity=0.341 Sum_probs=363.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
+++|+.|++||..|+++|++||||+||+|||+++.|+++|||||+||+|+|+++||+ |+|++++|++||+++||||
T Consensus 11 ~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~----akll~~~a~~qd~~~GDGT 86 (536)
T TIGR02340 11 QDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPA----AKILVELAQLQDREVGDGT 86 (536)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChH----HHHHHHHHHHHHHHhCCCh
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhc-CcccC--cH-HHHHHhhhhcC------Cchhhhh
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLT-SREVE--DH-ELADVAAVSAG------NDYTVGK 189 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~-s~~v~--~~-~l~~va~ts~~------~~~~l~~ 189 (509)
||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|++. ++|++ +. .|.++|+|+++ +++.|++
T Consensus 87 Tt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~ 166 (536)
T TIGR02340 87 TSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKIIGLDSDFFSN 166 (536)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhccccchhhHHHHHH
Confidence 999999999999999999999999999999999999999999975 88887 44 89999999988 4689999
Q ss_pred HHHHHHHhhcc---CCc-------E--EEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCC
Q 010494 190 MISDALQQVGR---NGV-------V--TIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIK 257 (509)
Q Consensus 190 li~~Ai~~v~~---~g~-------I--~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~ 257 (509)
++++|+..++. +|. | ...+|+++.|+ ++++|++|+++|.+| +|+++++||+|++++++++
T Consensus 167 l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s-~~i~Gi~i~~~~~~~-------~m~~~~~n~kIli~~~~L~ 238 (536)
T TIGR02340 167 IVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARES-YLVKGYALNCTRASQ-------QMPKRIKKAKIACLDFNLQ 238 (536)
T ss_pred HHHHHHHHHhcccccCccccchHHeEEEEecCCCcccc-EEEEEEEEecccCCC-------CCcceecCCcEEEEecCCC
Confidence 99999999962 332 2 33699999888 999999999999887 4788999999999999764
Q ss_pred CH-------------HH-----------HHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccC
Q 010494 258 NP-------------KD-----------MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGER 313 (509)
Q Consensus 258 ~~-------------~~-----------l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~ 313 (509)
.. .+ +.+.++.+.+.|++||+++++|++.++++|..++ +++++ ++
T Consensus 239 ~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~------I~~i~-----rv 307 (536)
T TIGR02340 239 KQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAG------AMGVR-----RC 307 (536)
T ss_pred CCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCC------cEEEe-----cC
Confidence 32 22 2345677889999999999999999999998874 67776 66
Q ss_pred ccchHHHHHHHhCCeeeecccCc-cccCCCccccCcceEEE---EecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHH
Q 010494 314 KSHYLDDIAILTGGLVIRDEMGL-TLDKAGKEVLGTAIKVV---ITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERF 389 (509)
Q Consensus 314 ~~~~L~~ia~~tG~~ii~~~~~~-~~~~~~~~~lG~~~~i~---v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~ 389 (509)
++++|+|||++|||+++++..++ ..+++++++||+|+.|+ +++++|++|++|+++
T Consensus 308 ~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~--------------------- 366 (536)
T TIGR02340 308 KKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGR--------------------- 366 (536)
T ss_pred CHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCC---------------------
Confidence 78999999999999999965433 23456677899999999 678899999988654
Q ss_pred HHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHH
Q 010494 390 QKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQK 468 (509)
Q Consensus 390 ~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~ 468 (509)
.++||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|++++...++++|
T Consensus 367 --------------~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~- 431 (536)
T TIGR02340 367 --------------KSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQ- 431 (536)
T ss_pred --------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhH-
Confidence 489999999999999999999999999999999999 9999999999999999988777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhc
Q 010494 469 IGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSA 502 (509)
Q Consensus 469 ~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~ 502 (509)
+++++|++||++||++||+|||+|+.+++.+|++
T Consensus 432 ~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~ 465 (536)
T TIGR02340 432 LAIAEFAEALLIIPKVLAVNAALDSTELVAKLRA 465 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 5899999999999999999999999999999976
No 24
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.7e-79 Score=663.99 Aligned_cols=407 Identities=21% Similarity=0.304 Sum_probs=363.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
.++++.|+.+|..++++|++||||+||+|||+++.|+++|||||+||+++|+++||+ ++|++++|++||+++||||
T Consensus 7 ~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~----a~ll~~~a~~q~~~~GDGT 82 (515)
T cd03338 7 ADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPA----AKMLVELSKAQDIEAGDGT 82 (515)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHH----HHHHHHHHHHHHhHhcCCc
Confidence 678999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC--cH-HHHHHhhhhcCC------chhhhhH
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE--DH-ELADVAAVSAGN------DYTVGKM 190 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~-~l~~va~ts~~~------~~~l~~l 190 (509)
||+++|+++|++++.++++.|+||..|++||++|.+.++++|++++++++ +. .|.++|+||+++ ++.|+++
T Consensus 83 tt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~l 162 (515)
T cd03338 83 TSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAPI 162 (515)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 44 899999999984 5889999
Q ss_pred HHHHHHhhccCCc----------EEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccC----
Q 010494 191 ISDALQQVGRNGV----------VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI---- 256 (509)
Q Consensus 191 i~~Ai~~v~~~g~----------I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i---- 256 (509)
+++|+.++++++. |.+++|++++|+ ++++|++|+++|.+|++ +|+.++||+++++++++
T Consensus 163 i~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds-~lv~Giv~~k~~~~~~~------~p~~i~n~ki~ll~~~le~~~ 235 (515)
T cd03338 163 AVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDT-ELVDGLVFTQKASKKAG------GPTRIEKAKIGLIQFCLSPPK 235 (515)
T ss_pred HHHHHHHhhcccccCcCCHHHeEEEEecCCChhhc-eeeeeEEEeccccCcCC------CCccccCCcEEEEeccccccc
Confidence 9999999998663 556799999999 99999999999999752 36678899999987754
Q ss_pred ---------CCH-----------HHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccc
Q 010494 257 ---------KNP-----------KDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSH 316 (509)
Q Consensus 257 ---------~~~-----------~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~ 316 (509)
+++ +++.++++++.+.|+||||++++|++++++.++.|.+.+ .+|+||+ +++++
T Consensus 236 ~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~-~~I~av~-----~~~~~ 309 (515)
T cd03338 236 TDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAK-LKIMVVK-----DIERE 309 (515)
T ss_pred cccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHH-CCceEEe-----cCCHH
Confidence 233 345567889999999999999999544444444444432 4789887 77889
Q ss_pred hHHHHHHHhCCeeeecccCccccCCCccccCcceEEEEe---cCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHH
Q 010494 317 YLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT---KDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNI 393 (509)
Q Consensus 317 ~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v~---~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~ 393 (509)
+|+|||++|||++++ +++++++++||+|+.|++. +++++++.+|.+
T Consensus 310 ~LerIa~~tGa~ii~-----sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~-------------------------- 358 (515)
T cd03338 310 EIEFICKTIGCKPVA-----SIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKN-------------------------- 358 (515)
T ss_pred HHHHHHHHHCCEEec-----ccccCCHhhCCCCceEEEEEECCeEEEEEEecCC--------------------------
Confidence 999999999999999 6888999999999999864 557889988753
Q ss_pred HHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHH
Q 010494 394 LNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAE 472 (509)
Q Consensus 394 l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~ 472 (509)
+++++||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|+++++..++.+| ++++
T Consensus 359 --------~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~-~~~~ 429 (515)
T cd03338 359 --------PGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWARTLTGVEQ-YCVR 429 (515)
T ss_pred --------CCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHHHHHHHHHHhccCCcHHH-HHHH
Confidence 14689999999999999999999999999999999999 9999999999999999998877777777 5899
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 473 IFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 473 ~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
+|++||+.||++|++|||+|+.+++.+|++.
T Consensus 430 ~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~ 460 (515)
T cd03338 430 AFADALEVIPYTLAENAGLNPISIVTELRNR 460 (515)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999774
No 25
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=8.6e-79 Score=659.50 Aligned_cols=398 Identities=21% Similarity=0.343 Sum_probs=361.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecC-----CCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhh
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNK-----YGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDL 114 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~-----~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~ 114 (509)
+++|..|+.||..++++|+|||||+||+|||+++ +|+++|||||+||+|+|+++||. |+|++++|++||++
T Consensus 21 ~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~----akll~~~a~~qd~~ 96 (533)
T PTZ00212 21 ETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPA----AKILVDISKTQDEE 96 (533)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHH----HHHHHHHHHhhhhh
Confidence 7899999999999999999999999999999998 59999999999999999999997 99999999999999
Q ss_pred cCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCc-----H-HHHHHhhhhcCC-----
Q 010494 115 AGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVED-----H-ELADVAAVSAGN----- 183 (509)
Q Consensus 115 ~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~-----~-~l~~va~ts~~~----- 183 (509)
+||||||+|+|+++||+++.+++++|+||+.|++||++|.+.++++|+++++++++ . .|.++|+|++++
T Consensus 97 ~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~t~l~sk~~~~ 176 (533)
T PTZ00212 97 VGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLSSKLLTV 176 (533)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHHHHHHhcccccch
Confidence 99999999999999999999999999999999999999999999999999998864 3 789999988765
Q ss_pred -chhhhhHHHHHHHhhccC---Cc--EEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccC-
Q 010494 184 -DYTVGKMISDALQQVGRN---GV--VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI- 256 (509)
Q Consensus 184 -~~~l~~li~~Ai~~v~~~---g~--I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i- 256 (509)
.+.|++++++|+..+... .. |.+.+|++++|+ .+++|+++++++.+ .|+++++||+|+++|+++
T Consensus 177 ~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds-~lv~G~v~~~~~~~--------~~~~~i~n~kIll~~~~Le 247 (533)
T PTZ00212 177 EKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDS-YLEDGFILEKKIGV--------GQPKRLENCKILVANTPMD 247 (533)
T ss_pred hHHHHHHHHHHHHHHHhccCCccceEEEEecCcCcccc-EEEEeEEEecccCC--------CCCccccCCcEEEEeCCCC
Confidence 378999999999988542 22 445699999999 89999999998643 357889999999999986
Q ss_pred -------------CCHHHHHH-----------HHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCccccc
Q 010494 257 -------------KNPKDMFK-----------ILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGE 312 (509)
Q Consensus 257 -------------~~~~~l~~-----------~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~ 312 (509)
++++++.. .++.+.+.|+++++++++|++.++++|..+ +|+||+ +
T Consensus 248 ~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~------~I~avr-----~ 316 (533)
T PTZ00212 248 TDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEA------GIMAIE-----H 316 (533)
T ss_pred CCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHC------CCEEEe-----c
Confidence 56655432 366788999999999999999999998777 478887 4
Q ss_pred CccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEE---EecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHH
Q 010494 313 RKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVV---ITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERF 389 (509)
Q Consensus 313 ~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~---v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~ 389 (509)
+++.+++|||++|||++++ +++++++++||+|+.|+ +++++|++|++|..
T Consensus 317 v~~~~l~rIa~~tGa~iis-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~---------------------- 369 (533)
T PTZ00212 317 ADFDGMERLAAALGAEIVS-----TFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAK---------------------- 369 (533)
T ss_pred CCHHHHHHHHHHhCCEEee-----cCCCCCHHHccCCceEEEEEECCeEEEEEEccCC----------------------
Confidence 5578999999999999999 68899999999999998 67889999998753
Q ss_pred HHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHH
Q 010494 390 QKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQK 468 (509)
Q Consensus 390 ~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~ 468 (509)
+++|||+|||+|+.+++|.+|+++|||+++|+++++| +|||||++|+++|..|+++++..++.+|
T Consensus 370 -------------~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~- 435 (533)
T PTZ00212 370 -------------GEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKS- 435 (533)
T ss_pred -------------CCEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHH-
Confidence 3689999999999999999999999999999999998 9999999999999999999877778777
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhc
Q 010494 469 IGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSA 502 (509)
Q Consensus 469 ~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~ 502 (509)
+++++|++||+.||++||+|||+|+.+++.+|++
T Consensus 436 ~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~ 469 (533)
T PTZ00212 436 LAIEAFAKALRQIPTIIADNGGYDSAELVSKLRA 469 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 5899999999999999999999999999999985
No 26
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1e-78 Score=657.81 Aligned_cols=402 Identities=22% Similarity=0.327 Sum_probs=363.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
.+++..|+.+|..++++|++||||+||+|||+++.| ++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 17 ~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~----a~ll~~~a~~q~~~~GDGT 91 (522)
T TIGR02345 17 KGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPA----AKTLVDIAKSQDSEVGDGT 91 (522)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChH----HHHHHHHHHHHHHHhCCCc
Confidence 789999999999999999999999999999999999 99999999999999999999 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC-----cH-HHHHHhhhhcC------Cchhh
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE-----DH-ELADVAAVSAG------NDYTV 187 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~-----~~-~l~~va~ts~~------~~~~l 187 (509)
||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++|++ +. .|.++|+|+++ +++.|
T Consensus 92 Tt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~l 171 (522)
T TIGR02345 92 TSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNSKLIAHEKEFF 171 (522)
T ss_pred hhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhccccccchHHHH
Confidence 99999999999999999999999999999999999999999999999987 33 79999999987 46899
Q ss_pred hhHHHHHHHhhccCC------cEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCC----
Q 010494 188 GKMISDALQQVGRNG------VVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIK---- 257 (509)
Q Consensus 188 ~~li~~Ai~~v~~~g------~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~---- 257 (509)
++++++|+.++++++ .|...+|++++|+ ++++|++|+++|.+|+|. .|++.++||+|+++|++++
T Consensus 172 ~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~ds-~~v~Giv~~~~~~~~~~~----~~~~~~~n~kIll~~~~Le~~~~ 246 (522)
T TIGR02345 172 SKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQDS-VLVNGVAFKKTFSYAGFE----QQPKKFANPKILLLNVELELKAE 246 (522)
T ss_pred HHHHHHHHHHHhhccCChhHheEEeecCCCHHhc-ceecceEEecccCccccc----cCCceeccceEEEEecCcccCcc
Confidence 999999999998652 1333589999999 799999999999999874 3567899999999998753
Q ss_pred ---------CHHHH-----------HHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccch
Q 010494 258 ---------NPKDM-----------FKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHY 317 (509)
Q Consensus 258 ---------~~~~l-----------~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~ 317 (509)
+++++ .+.++.+.+.|+++|+++++|++.++++|..+ +|++++ ++.+++
T Consensus 247 ~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~------~I~~~~-----~v~~~d 315 (522)
T TIGR02345 247 KDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADH------NIFCAG-----RVSDED 315 (522)
T ss_pred ccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHC------CcEEEe-----cCCHHH
Confidence 34443 33456678889999999999999999998776 467665 667889
Q ss_pred HHHHHHHhCCeeeecccCccccCCCccccCcceEEEE---ecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHH
Q 010494 318 LDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVI---TKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNIL 394 (509)
Q Consensus 318 L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v---~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l 394 (509)
+++++++|||++++ +++++++++||+|+.++. .++++++|+||+++
T Consensus 316 l~ria~~tga~ii~-----~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~-------------------------- 364 (522)
T TIGR02345 316 LKRVVKACGGSIQS-----TTSDLEADVLGTCALFEERQIGSERYNYFTGCPHA-------------------------- 364 (522)
T ss_pred HHHHHHHhCCeEEc-----chhhCChhhccCCceEEEEEECCeEEEEEEcCCCC--------------------------
Confidence 99999999999999 688899999999999985 36789999987544
Q ss_pred HHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhh-CccccCchhHHHHHHHHHhHhccCCcHHHHHHHHH
Q 010494 395 NERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEE-GIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEI 473 (509)
Q Consensus 395 ~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~-gvvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~ 473 (509)
.++||+|||+|+.+++|++|+++||++++++++++ ++|||||++|++++.+|++++....+.+| +++++
T Consensus 365 ---------~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~-~~i~~ 434 (522)
T TIGR02345 365 ---------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKARKIVAGGGAIEMELSKILREHSKKIDGKQQ-LIIEA 434 (522)
T ss_pred ---------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHHhhCCCHHH-HHHHH
Confidence 48899999999999999999999999999999998 59999999999999999998777778777 58999
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 474 FKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 474 ~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
|++||++||++||+|||+|+.+++.+|++.
T Consensus 435 ~a~aL~~ip~~La~NaG~d~~~vl~~l~~~ 464 (522)
T TIGR02345 435 FAKALEIIPRSLCENAGFDSIEILNKLRSR 464 (522)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999874
No 27
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.2e-78 Score=656.56 Aligned_cols=407 Identities=21% Similarity=0.312 Sum_probs=359.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
.+++..|+.+|..|+++|++||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 8 ~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~----akll~~~a~~qd~~~GDGT 83 (517)
T TIGR02342 8 TDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPA----AKMLVELSKAQDIEAGDGT 83 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChH----HHHHHHHHHHHHHHhCCCc
Confidence 678899999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC--cH-HHHHHhhhhcCCc------hhhhhH
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE--DH-ELADVAAVSAGND------YTVGKM 190 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~-~l~~va~ts~~~~------~~l~~l 190 (509)
||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++|++ +. .|.++|+|+++++ +.|+++
T Consensus 84 tt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l 163 (517)
T TIGR02342 84 TSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSDREILIKSATTSLSSKVVSQYSSLLAPL 163 (517)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 44 7999999998753 678999
Q ss_pred HHHHHHhhccC---Cc-----EE--EecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccC----
Q 010494 191 ISDALQQVGRN---GV-----VT--IEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI---- 256 (509)
Q Consensus 191 i~~Ai~~v~~~---g~-----I~--v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i---- 256 (509)
+++|+..++++ +. |. ...|+++.|+ ++++|++|+++|.++. +||+.++||+|+++++++
T Consensus 164 ~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds-~li~Givl~k~~~~~~------~mpk~i~n~kI~ll~~~Le~~~ 236 (517)
T TIGR02342 164 AVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDT-ELIEGLVFTQKASRSA------GGPTRIEKAKIGLIQFQISPPK 236 (517)
T ss_pred HHHHHHHHhccccCCccCHHHeeEEeccCCChhhc-EEEeeEEEeccccccC------CCCccccCCcEEEEecCCCCCc
Confidence 99999999762 22 32 3488999999 9999999999998742 577889999999998754
Q ss_pred ---------CCH-----------HHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccc
Q 010494 257 ---------KNP-----------KDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSH 316 (509)
Q Consensus 257 ---------~~~-----------~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~ 316 (509)
.++ +++.++++++.+.|+|||+|+++|++++++.++.|.+.+ .+|+||+ +++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~-~~I~av~-----~v~~~ 310 (517)
T TIGR02342 237 TDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAK-MKIMVVK-----DIERE 310 (517)
T ss_pred ccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhh-CCceEEe-----cCCHH
Confidence 232 234567889999999999999999544444444444433 4789987 77889
Q ss_pred hHHHHHHHhCCeeeecccCccccCCCccccCcceEEE-E--ecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHH
Q 010494 317 YLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVV-I--TKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNI 393 (509)
Q Consensus 317 ~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~-v--~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~ 393 (509)
+|+|||++|||++++ ++++++++++|+|+.|+ + +++.++++.+|.+
T Consensus 311 ~LerIa~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~-------------------------- 359 (517)
T TIGR02342 311 EVEFICKTIGCKPIA-----SIDHFTADKLGSAELVEEVTTDGGKIIKITGIQN-------------------------- 359 (517)
T ss_pred HHHHHHHHHCCEEEc-----chhhcCcccCcCCceEEEEEECCeEEEEEEccCC--------------------------
Confidence 999999999999999 68888999999999998 3 3557778887753
Q ss_pred HHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHH
Q 010494 394 LNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAE 472 (509)
Q Consensus 394 l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~ 472 (509)
+++++||+|||+|+.+++|.+|+++||+++++++++++ +|||||++|+++|.+|+++++..++.+| ++++
T Consensus 360 --------~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~-~~i~ 430 (517)
T TIGR02342 360 --------AGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIEIAIKLSKLARTMKGVES-YCVR 430 (517)
T ss_pred --------CCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHHHHHHHHHHHhcCCcHHH-HHHH
Confidence 24689999999999999999999999999999999985 9999999999999999998877778787 5899
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 473 IFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 473 ~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
+|++||++||++||+|||+|+.+++.+|++.
T Consensus 431 ~~a~al~~ip~~La~NaG~d~~~~l~~l~~~ 461 (517)
T TIGR02342 431 AFADALEVIPYTLAENAGLNPIDVVTELRNR 461 (517)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999874
No 28
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-80 Score=661.76 Aligned_cols=446 Identities=39% Similarity=0.607 Sum_probs=375.2
Q ss_pred cchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHH
Q 010494 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA 109 (509)
Q Consensus 30 ~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~ 109 (509)
+++...|| ++||+.|+.|+..++++|++||||+||||||+++.|+|+|||||+||+|+|+++||. |+|++++|+
T Consensus 2 ~~~~~~~~--~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~----akll~eva~ 75 (524)
T COG0459 2 MGKERKFG--EDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPG----AKLLVEVAK 75 (524)
T ss_pred Cccccccc--HHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCch----hHHHHHHHH
Confidence 46778899 899999999999999999999999999999999977999999999999999999998 999999999
Q ss_pred hhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcH--H----HHHHhhhhcCC
Q 010494 110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH--E----LADVAAVSAGN 183 (509)
Q Consensus 110 ~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~--~----l~~va~ts~~~ 183 (509)
+||+++||||||+|||+++||+++.+++++|+||+.|++||++|.+.++++|+++++++++. + ..++++.+.++
T Consensus 76 ~qd~e~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~~~~~t~v~sk~~~~ 155 (524)
T COG0459 76 KQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEELKIAITSVASKSANS 155 (524)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhhheeeeeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999864 2 23333444555
Q ss_pred chhhhhHHHHHHHhhcc-----CCcEEEe-cCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCC
Q 010494 184 DYTVGKMISDALQQVGR-----NGVVTIE-KGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIK 257 (509)
Q Consensus 184 ~~~l~~li~~Ai~~v~~-----~g~I~v~-~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~ 257 (509)
++.|++++++|+.+++. ++++.++ .|++..|+ ++++|++|++||.+|||+++ +.++||+|+++|++|+
T Consensus 156 ~~~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~-~vveG~~~dkg~~s~~~~~~-----~~~e~~~Ili~d~~l~ 229 (524)
T COG0459 156 DEEIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETEL-EVVEGMVFDKGYLSPYFMPD-----KRLENPKILLLDKKLE 229 (524)
T ss_pred hHHHHHHHHHHHHHhcccccccCCeEEEEecCCCccce-EEEeeEEecCCccCCCCCCc-----cccccceEEEEccccc
Confidence 78999999999999998 7776554 66666666 99999999999999997443 6899999999999988
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCcc
Q 010494 258 NPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLT 337 (509)
Q Consensus 258 ~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~ 337 (509)
..++..+ ++.....+.+++++++++.++++..++.|.+++..+++||+.|+|+|.+.+.|+|++++|+.++..++++
T Consensus 230 ~~k~~l~-~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~-- 306 (524)
T COG0459 230 IKKPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLG-- 306 (524)
T ss_pred cccccCc-ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhH--
Confidence 8777666 6666666667777777777777777777777777777777777777777777777777777777776543
Q ss_pred ccCCCccccCcceEEEEecCeEEEEecCCChhHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHhhhcCCeEEEEeccCChh
Q 010494 338 LDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEIT-EERFQKNILNERIARLSGGIAILQVGAQTVV 416 (509)
Q Consensus 338 ~~~~~~~~lG~~~~i~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~-~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~ 416 (509)
+ ....+|.|..+.+.++.+....|.+. ..++++. .++|+++.+++|.++ .++++||+|||+|+.
T Consensus 307 -~--~l~~~~ga~~v~~~~d~t~~~~G~~~-----------~~~ve~~~~~~~~~~~~~~~~~~-~~~~~tI~vrgate~ 371 (524)
T COG0459 307 -E--RLAKLGGAKIVSVLKDLTTIVLGEGA-----------AGLVEETKTGDYDMEKLQERKAK-AGGVATILVRGATEV 371 (524)
T ss_pred -H--HHHHccCceEEeecccCceeecCccc-----------cceEEEeeccchhhhhhhhhhhc-CCCeEEEEECCccHh
Confidence 1 34556666666666666655555320 1222333 567888899999988 899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Q 010494 417 ELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNF 495 (509)
Q Consensus 417 ~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ 495 (509)
+++|++|+++|||+++|+++++| +|||||++|++++..|+++....++.+|++|+++|++||+.||++|++|||+||.+
T Consensus 372 ~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~~ 451 (524)
T COG0459 372 ELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIE 451 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999999 99999999999999999884334342444699999999999999999999999999
Q ss_pred HHHHHhcccC
Q 010494 496 VVDQVSAHKC 505 (509)
Q Consensus 496 ii~~l~~~~~ 505 (509)
++.+|++.+.
T Consensus 452 v~~~L~~~~~ 461 (524)
T COG0459 452 VLSKLRSAHA 461 (524)
T ss_pred HHHHHHhccc
Confidence 9999999765
No 29
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=8.9e-79 Score=652.05 Aligned_cols=383 Identities=20% Similarity=0.311 Sum_probs=352.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
++++..|+.++..+++++++||||+||+|||+++.|+++|||||+||+++|+++||. |+|++++|++||+++||||
T Consensus 15 ~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~q~~~~GDGT 90 (480)
T cd03337 15 RKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPA----AKSMIELSRTQDEEVGDGT 90 (480)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChH----HHHHHHHHHhHHHHhCCCc
Confidence 789999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC--cH-HHHHHhhhhcCC------chhhhhH
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE--DH-ELADVAAVSAGN------DYTVGKM 190 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~-~l~~va~ts~~~------~~~l~~l 190 (509)
||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|++++++++ +. .|.++++|++++ ++.|+++
T Consensus 91 tt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~ls~l 170 (480)
T cd03337 91 TSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNL 170 (480)
T ss_pred chhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHhccCcchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 44 799999999984 5789999
Q ss_pred HHHHHHhhccC--C---------cE--EEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCC
Q 010494 191 ISDALQQVGRN--G---------VV--TIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIK 257 (509)
Q Consensus 191 i~~Ai~~v~~~--g---------~I--~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~ 257 (509)
+++|+..++++ + .| ...+|++++|+ ++++|++|++++.+| +|+++++||+|++++++++
T Consensus 171 v~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds-~li~Gvvi~k~~~~~-------~m~~~~~n~kIlll~~~Le 242 (480)
T cd03337 171 ALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDS-RVLDGVMLNKDVTHP-------KMRRRIENPRIVLLDCPLE 242 (480)
T ss_pred HHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhc-ccccceEEeccCCCC-------CCCcEecCCCEEEEecCcc
Confidence 99999999764 2 13 34579999998 999999999998876 4788999999999999887
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCcc
Q 010494 258 NPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLT 337 (509)
Q Consensus 258 ~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~ 337 (509)
. |||++++|++.++++|..| +|+||+ ++++++|+|||++|||++++ +
T Consensus 243 ~-----------------lvi~~k~I~d~al~~L~~~------~I~~v~-----~v~~~~L~rIa~~tGa~ii~-----~ 289 (480)
T cd03337 243 Y-----------------LVITEKGVSDLAQHYLVKA------GITALR-----RVRKTDNNRIARACGATIVN-----R 289 (480)
T ss_pred e-----------------EEEeCCCccHHHHHHHHHC------CcEEEE-----eCCHHHHHHHHHHHCCEEec-----c
Confidence 5 8999999999999999887 478887 57789999999999999999 5
Q ss_pred ccCCCccccCc-ceEEEE---ecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccC
Q 010494 338 LDKAGKEVLGT-AIKVVI---TKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQ 413 (509)
Q Consensus 338 ~~~~~~~~lG~-~~~i~v---~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~ 413 (509)
+++++++.||+ |+.+++ +++++++|++|+++ +++||+|||+
T Consensus 290 ~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~-----------------------------------~~~TIllrG~ 334 (480)
T cd03337 290 PEELTESDVGTGAGLFEVKKIGDEYFTFITECKDP-----------------------------------KACTILLRGA 334 (480)
T ss_pred hhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCC-----------------------------------CEEEEEEECC
Confidence 88889999999 455543 45788999998654 4889999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 010494 414 TVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVN 492 (509)
Q Consensus 414 t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d 492 (509)
|+.+++|.+|+++||+++++++++++ +|||||++|+++|.+|+++++..++.+| +++++|++||++||++||+|||+|
T Consensus 335 t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~-~~~~~~a~al~~ip~~La~NaG~d 413 (480)
T cd03337 335 SKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQ-WPYKAVASALEVIPRTLAQNCGAN 413 (480)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHHH-HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999996 9999999999999999998877888888 489999999999999999999999
Q ss_pred hHHHHHHHhcc
Q 010494 493 GNFVVDQVSAH 503 (509)
Q Consensus 493 ~~~ii~~l~~~ 503 (509)
+.+++.+|++.
T Consensus 414 ~~~~l~~l~~~ 424 (480)
T cd03337 414 VIRTLTELRAK 424 (480)
T ss_pred HHHHHHHHHHH
Confidence 99999999874
No 30
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=8.2e-78 Score=650.06 Aligned_cols=399 Identities=22% Similarity=0.336 Sum_probs=360.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecC--CCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCC
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNK--YGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGD 117 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~--~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GD 117 (509)
+++|+.|+.|+..|+++|+|||||+||+|||+++ +|+++|||||+||+++|+++||. |+|++++|++||+++||
T Consensus 12 ~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~----akll~~~a~~qd~~~GD 87 (517)
T cd03336 12 ETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPA----AKVLVDISKVQDDEVGD 87 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChH----HHHHHHHHHHHHhHhCC
Confidence 7899999999999999999999999999999998 59999999999999999999998 99999999999999999
Q ss_pred CcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC-----cH-HHHHHhhhhcCC------ch
Q 010494 118 GCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE-----DH-ELADVAAVSAGN------DY 185 (509)
Q Consensus 118 GTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~-----~~-~l~~va~ts~~~------~~ 185 (509)
||||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|++++++++ +. .|.++|+|++++ ++
T Consensus 88 GTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~~~ 167 (517)
T cd03336 88 GTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKE 167 (517)
T ss_pred ChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccccchhHH
Confidence 9999999999999999999999999999999999999999999999999884 12 789999987764 58
Q ss_pred hhhhHHHHHHHhhccC---Cc--EEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCC---
Q 010494 186 TVGKMISDALQQVGRN---GV--VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIK--- 257 (509)
Q Consensus 186 ~l~~li~~Ai~~v~~~---g~--I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~--- 257 (509)
.|++++++|+.+++.. .. |...+|++++|+ .+++|+++++++.+ .|+++++||+|+++|++++
T Consensus 168 ~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~ds-~l~~G~v~~~~~~~--------~~~~~~~n~kIli~~~~le~~~ 238 (517)
T cd03336 168 HFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLKDS-YLDEGFLLDKKIGV--------NQPKRIENAKILIANTPMDTDK 238 (517)
T ss_pred HHHHHHHHHHHHhhccCCccceeEEEccCCCccce-EEEeeEEEecccCC--------CCCCeeccccEEEEecCCCccc
Confidence 9999999999999632 22 344689999999 89999999988643 2577899999999999754
Q ss_pred -----------CHHHHHH-----------HHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCcc
Q 010494 258 -----------NPKDMFK-----------ILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKS 315 (509)
Q Consensus 258 -----------~~~~l~~-----------~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~ 315 (509)
+++++.+ .++.+.+.|++++++++.|++.++++|..+ +|+||++|+ +
T Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~------~I~av~~v~-----~ 307 (517)
T cd03336 239 IKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADA------GIMAIEHAD-----F 307 (517)
T ss_pred ccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHC------CcEEEecCC-----H
Confidence 5565533 367888999999999999999999998776 579998765 4
Q ss_pred chHHHHHHHhCCeeeecccCccccCCCccccCcceEEEE---ecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHH
Q 010494 316 HYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVI---TKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKN 392 (509)
Q Consensus 316 ~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v---~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~ 392 (509)
.+|+|||++|||++++ +++++++++||+|+.|+. +++++++|.+|+++
T Consensus 308 ~~L~rIa~~tGa~ii~-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~------------------------ 358 (517)
T cd03336 308 DGVERLALVTGGEIAS-----TFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAG------------------------ 358 (517)
T ss_pred HHHHHHHHHhCCEEec-----ccCCCCcccccccceEEEEEECCeEEEEEEccCCC------------------------
Confidence 5799999999999999 688999999999999984 46799999988643
Q ss_pred HHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHH
Q 010494 393 ILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGA 471 (509)
Q Consensus 393 ~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~ 471 (509)
+++||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|..|+++++..++++| +++
T Consensus 359 -----------~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~-~~i 426 (517)
T cd03336 359 -----------EACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKS-LAI 426 (517)
T ss_pred -----------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhhCCCHHH-HHH
Confidence 589999999999999999999999999999999998 9999999999999999999877778888 589
Q ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 472 EIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 472 ~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
++|++||+.||++||+|||+|+.+++.+|++.
T Consensus 427 ~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~ 458 (517)
T cd03336 427 EAFAKALRQLPTIIADNAGYDSAELVAQLRAA 458 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999864
No 31
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.2e-78 Score=654.32 Aligned_cols=399 Identities=22% Similarity=0.325 Sum_probs=357.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
++++..|+.+|..|+++|++||||+||||||++++|+++|||||+||+|+|+++||+ |+|++++|++||+++||||
T Consensus 17 ~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~----akll~e~a~sqd~~~GDGT 92 (531)
T TIGR02346 17 EEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPA----AKLLVMASEMQENEIGDGT 92 (531)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHH----HHHHHHHHHHHhhhhCCCh
Confidence 569999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCc-ccCc---H-HHHHHhhhhcCC-----chhhhh
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSR-EVED---H-ELADVAAVSAGN-----DYTVGK 189 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~-~v~~---~-~l~~va~ts~~~-----~~~l~~ 189 (509)
||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++ ++++ . .|.+++++++++ ++.|++
T Consensus 93 Tt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~~~~ls~ 172 (531)
T TIGR02346 93 NLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVRNKKELIKALKASISSKQYGNEDFLAQ 172 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhccccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999986 7644 3 788998888743 789999
Q ss_pred HHHHHHHhhccCC--c-----E--EEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccC----
Q 010494 190 MISDALQQVGRNG--V-----V--TIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI---- 256 (509)
Q Consensus 190 li~~Ai~~v~~~g--~-----I--~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i---- 256 (509)
++++|+.++++++ . | ...+|++++|+ ++++|++|++++. .+++.++||||+++++++
T Consensus 173 l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds-~li~Gi~~~~~~~---------~~~k~i~n~kI~l~~~~l~~~~ 242 (531)
T TIGR02346 173 LVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNS-EVLKGMVFNREAE---------GSVKRVKNAKVAVFSCPLDTAT 242 (531)
T ss_pred HHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhc-eeEeeeEEeccCC---------CCceeccCCCEEEEecCcCCCc
Confidence 9999999998754 2 2 23489999988 9999999999832 245689999999998753
Q ss_pred ---------CCHHH-----------HHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccc
Q 010494 257 ---------KNPKD-----------MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSH 316 (509)
Q Consensus 257 ---------~~~~~-----------l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~ 316 (509)
+++++ +.++++++.+.|+||||++++|++.++++|..+ +|+||++|+++
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~------~I~av~~~~~~----- 311 (531)
T TIGR02346 243 TETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKY------NIMVLKIPSKF----- 311 (531)
T ss_pred ccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHC------CcEEEecCCHH-----
Confidence 34333 456788999999999999999999999988654 68999988754
Q ss_pred hHHHHHHHhCCeeeecccCccccCCCccccCcceEEEEe---cCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHH
Q 010494 317 YLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT---KDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNI 393 (509)
Q Consensus 317 ~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v~---~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~ 393 (509)
+|+|||.+|||++++ +++++++++||+|+.|++. ++++.+|.++..
T Consensus 312 ~l~~Ia~~tGa~ii~-----~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~-------------------------- 360 (531)
T TIGR02346 312 ELRRLCKTVGATPLA-----RLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENG-------------------------- 360 (531)
T ss_pred HHHHHHHHHCCEEec-----ccccCCHhHccccceEEEEEECCEEEEEEEccCC--------------------------
Confidence 789999999999998 5888999999999999863 568889987532
Q ss_pred HHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHH
Q 010494 394 LNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAE 472 (509)
Q Consensus 394 l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~ 472 (509)
.++++||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|+++++...+.+| ++++
T Consensus 361 --------~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~-~~~~ 431 (531)
T TIGR02346 361 --------DSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIELALRLKKYANKLPGLDQ-YAIK 431 (531)
T ss_pred --------CCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHH-HHHH
Confidence 25789999999999999999999999999999999999 9999999999999999998877778777 5899
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 473 IFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 473 ~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
+|++||++||++||+|||+|+.+++.+|++.
T Consensus 432 ~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~ 462 (531)
T TIGR02346 432 KFAEAFEIIPRTLAENAGLNPNEVIPKLYAA 462 (531)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999764
No 32
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.7e-76 Score=636.55 Aligned_cols=399 Identities=24% Similarity=0.347 Sum_probs=357.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCC--CCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCC
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKY--GPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGD 117 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~--g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GD 117 (509)
++++..|+.|+..|+++|+|||||+||+|||+++. |+++|||||+||+++|+++||. |+|++++|++||+++||
T Consensus 13 ~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~----akll~~~a~~qd~~~GD 88 (519)
T TIGR02341 13 ENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPA----AKVLVDMSKVQDDEVGD 88 (519)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChH----HHHHHHHHHHhHhhhCC
Confidence 78999999999999999999999999999999985 9999999999999999999998 99999999999999999
Q ss_pred CcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCc-----H-HHHHHhhhhcCCc------h
Q 010494 118 GCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVED-----H-ELADVAAVSAGND------Y 185 (509)
Q Consensus 118 GTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~-----~-~l~~va~ts~~~~------~ 185 (509)
||||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++++++ . .|.++|+|+++++ +
T Consensus 89 GTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski~~~~~~ 168 (519)
T TIGR02341 89 GTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSKILSQHKD 168 (519)
T ss_pred chhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999853 2 7899999988753 6
Q ss_pred hhhhHHHHHHHhhccC---CcEEE--ecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCC--
Q 010494 186 TVGKMISDALQQVGRN---GVVTI--EKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKN-- 258 (509)
Q Consensus 186 ~l~~li~~Ai~~v~~~---g~I~v--~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~-- 258 (509)
.|++++++|+..+... ..|.+ .+|++++|+ .+++|+++++++.+ +|++.++||+|+++|++++.
T Consensus 169 ~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~~s-~l~~G~v~~~~~~~--------~~~~~~~n~~Ili~~~~Le~~~ 239 (519)
T TIGR02341 169 HFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLNDS-YLDEGFLLEKKIGV--------NQPKRIENAKILIANTPMDTDK 239 (519)
T ss_pred HHHHHHHHHHHHhccCCChhheEEEEccCCCcccc-eEEeeEEEeccCCC--------CCceeeccccEEEEecCCCCCc
Confidence 7999999999988432 23443 489999999 89999999998643 35778999999999997642
Q ss_pred ------------HHHHHH-----------HHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCcc
Q 010494 259 ------------PKDMFK-----------ILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKS 315 (509)
Q Consensus 259 ------------~~~l~~-----------~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~ 315 (509)
++++.. +++.+.+.|++++++++.|++.++++|..+ +|+||++|+ +
T Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~------~I~~v~~~~-----~ 308 (519)
T TIGR02341 240 VKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADA------GVMAIEHAD-----F 308 (519)
T ss_pred cccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHC------CcEEEecCC-----H
Confidence 333322 366888999999999999999999988666 578998775 4
Q ss_pred chHHHHHHHhCCeeeecccCccccCCCccccCcceEEEE---ecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHH
Q 010494 316 HYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVI---TKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKN 392 (509)
Q Consensus 316 ~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v---~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~ 392 (509)
.+|+|||++|||++++ ++++++++++|+|+.|+. +++++++|.+|+++
T Consensus 309 ~~l~~ia~~tGa~ii~-----~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~------------------------ 359 (519)
T TIGR02341 309 EGIERLALVTGGEIVS-----TFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKLG------------------------ 359 (519)
T ss_pred HHHHHHHHHhCCEEec-----ccccCCccccccCceEEEEEECCEEEEEEEcCCCC------------------------
Confidence 5899999999999999 688889899999999974 46789999988643
Q ss_pred HHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHH
Q 010494 393 ILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGA 471 (509)
Q Consensus 393 ~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~ 471 (509)
+++||+|||+|+.+++|.+|+++||+++++++++++ +||||||+|++++..|+++++..++++| +++
T Consensus 360 -----------~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~-~~i 427 (519)
T TIGR02341 360 -----------EACTIVLRGATQQILDESERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKAVAVEAQKVPGKEA-LAV 427 (519)
T ss_pred -----------CEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhcCCChHH-HHH
Confidence 589999999999999999999999999999999996 9999999999999999998877778787 589
Q ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 472 EIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 472 ~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
++|++||+.||++||+|||+|+.+++.+|++.
T Consensus 428 ~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~ 459 (519)
T TIGR02341 428 EAFARALRQLPTIIADNAGFDSAELVAQLRAA 459 (519)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999874
No 33
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.7e-76 Score=632.18 Aligned_cols=388 Identities=37% Similarity=0.556 Sum_probs=356.9
Q ss_pred hccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhh
Q 010494 34 VYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTND 113 (509)
Q Consensus 34 i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~ 113 (509)
..+| ++++..|++||..+++++++||||+|++|||+++.|+++|||||+||+++|+++||. ++|+++++++||+
T Consensus 3 ~~~~--~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~----a~ll~~~~~~~~~ 76 (464)
T cd00309 3 REFG--EEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPA----AKLLVEVAKSQDD 76 (464)
T ss_pred cccH--HHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHH----HHHHHHHHHHHHh
Confidence 4567 899999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcc--cCcH-HHHHHhhhhcC------Cc
Q 010494 114 LAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSRE--VEDH-ELADVAAVSAG------ND 184 (509)
Q Consensus 114 ~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~--v~~~-~l~~va~ts~~------~~ 184 (509)
++||||||+++|+++|++++.+++++|+||+.|++||+.|.+.++++|++++++ +++. .|.++|+|+++ ++
T Consensus 77 ~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~ 156 (464)
T cd00309 77 EVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGGD 156 (464)
T ss_pred HhCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHhHhcccccccccch
Confidence 999999999999999999999999999999999999999999999999999998 4455 89999999998 68
Q ss_pred hhhhhHHHHHHHhhcc------CCcEEE--ecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccC
Q 010494 185 YTVGKMISDALQQVGR------NGVVTI--EKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI 256 (509)
Q Consensus 185 ~~l~~li~~Ai~~v~~------~g~I~v--~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i 256 (509)
+.|++++++|+.++++ .+.|++ .+|+++.|| ++++|++|+++|.+|+| +.+++||+|+++++++
T Consensus 157 ~~l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~ds-~li~Gi~~~~~~~~~~m-------~~~~~n~~Ili~~~~L 228 (464)
T cd00309 157 DFLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLEDS-ELVVGMVFDKGYLSPYM-------PKRLENAKILLLDCKL 228 (464)
T ss_pred HHHHHHHHHHHHHhccccCccccceEEEEecCCCCcccc-eeeeeEEEecCCCCCCC-------ceeecCceEEEEecCc
Confidence 8999999999999988 455554 489999999 89999999999999874 6789999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCc
Q 010494 257 KNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGL 336 (509)
Q Consensus 257 ~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~ 336 (509)
+. +|+++++|++.++++|..+ +|+||+ ++++++|+|||++|||++++
T Consensus 229 e~-----------------lIi~~~~I~~~al~~L~~~------~I~~v~-----~~~~~~L~~Ia~~tGa~ii~----- 275 (464)
T cd00309 229 EY-----------------VVIAEKGIDDEALHYLAKL------GIMAVR-----RVRKEDLERIAKATGATIVS----- 275 (464)
T ss_pred ce-----------------EEecCCCcCHHHHHHHHHC------CeEEEE-----eCCHHHHHHHHHHhCCEEec-----
Confidence 87 7778888999999998775 578887 46789999999999999999
Q ss_pred cccCCCccccCcceEEEEe---cCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccC
Q 010494 337 TLDKAGKEVLGTAIKVVIT---KDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQ 413 (509)
Q Consensus 337 ~~~~~~~~~lG~~~~i~v~---~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~ 413 (509)
++++++++.+|+|+.+++. ++++++|.++.. +.++||+|||+
T Consensus 276 ~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~-----------------------------------~~~~TIllrG~ 320 (464)
T cd00309 276 RLEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKG-----------------------------------GKVATILLRGA 320 (464)
T ss_pred ccccCCcccCccccEEEEEEEcCeeEEEEEecCC-----------------------------------CCEEEEEEeCC
Confidence 5788888999999999864 567888887643 35899999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 010494 414 TVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVN 492 (509)
Q Consensus 414 t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d 492 (509)
|+.+++|++|+++||+++++++++++ +|||||++|+++++.|++++...++.+| +++++|++||+.||++|++|||+|
T Consensus 321 t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~~~~~-~~~~~~a~aL~~ip~~L~~NaG~d 399 (464)
T cd00309 321 TEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKEQ-LGIEAFADALEVIPRTLAENAGLD 399 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999995 9999999999999999999877777777 589999999999999999999999
Q ss_pred hHHHHHHHhccc
Q 010494 493 GNFVVDQVSAHK 504 (509)
Q Consensus 493 ~~~ii~~l~~~~ 504 (509)
+.+++.+|++.+
T Consensus 400 ~~~~~~~l~~~~ 411 (464)
T cd00309 400 PIEVVTKLRAKH 411 (464)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 34
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.7e-76 Score=633.26 Aligned_cols=388 Identities=22% Similarity=0.311 Sum_probs=350.0
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhh
Q 010494 35 YFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDL 114 (509)
Q Consensus 35 ~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~ 114 (509)
.++. ++++..|+.+|..|+++|++||||+||+|||++++|+++|||||+||+++|+++||+ ++|++++|++||++
T Consensus 3 ~~~~-~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~~~~~ 77 (472)
T cd03341 3 YSGL-EEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPA----AKLLVMASQMQEEE 77 (472)
T ss_pred cchH-HHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHH----HHHHHHHHHHHhhh
Confidence 3444 789999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcc-cCc---H-HHHHHhhhhcC-----Cc
Q 010494 115 AGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSRE-VED---H-ELADVAAVSAG-----ND 184 (509)
Q Consensus 115 ~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~-v~~---~-~l~~va~ts~~-----~~ 184 (509)
+||||||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|++++++ +++ . .+.++++++++ ++
T Consensus 78 ~GDGTTt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~ 157 (472)
T cd03341 78 IGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYGNE 157 (472)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccchH
Confidence 99999999999999999999999999999999999999999999999999876 543 2 67788887764 36
Q ss_pred hhhhhHHHHHHHhhccC--Cc-------EEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeeccc
Q 010494 185 YTVGKMISDALQQVGRN--GV-------VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK 255 (509)
Q Consensus 185 ~~l~~li~~Ai~~v~~~--g~-------I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~ 255 (509)
+.|++++++|+.+++++ |. |...+|++++|| ++++|++|++.+. .++++++||+|++++++
T Consensus 158 ~~l~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds-~lv~Giv~~~~~~---------~~~~~~~n~~Ili~~~~ 227 (472)
T cd03341 158 DFLSPLVAEACISVLPENIGNFNVDNIRVVKILGGSLEDS-KVVRGMVFKREPE---------GSVKRVKKAKVAVFSCP 227 (472)
T ss_pred HHHHHHHHHHHHHHhhccCCcCChhHeEEEEecCCCcccc-eEEeeEEEccccC---------CCceeccCCcEEEEecc
Confidence 79999999999999875 43 334589999999 9999999986532 34478999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccC
Q 010494 256 IKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMG 335 (509)
Q Consensus 256 i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~ 335 (509)
++. |+||||++++|+++++++|..+ +|+||++|+ +.+|+|||++|||++++
T Consensus 228 Le~--------------g~~lvi~~~~I~d~al~~l~~~------~I~av~~~~-----~~~Le~Ia~~tGa~ii~---- 278 (472)
T cd03341 228 FDI--------------GVNVIVAGGSVGDLALHYCNKY------GIMVIKINS-----KFELRRLCRTVGATPLP---- 278 (472)
T ss_pred ccC--------------CCeEEEECCCCCHHHHHHHHHC------CeEEEEeCC-----HHHHHHHHHHhCCEEec----
Confidence 877 8999999999999999987543 689998775 66899999999999999
Q ss_pred ccccCCCccccCcceEEEEec---CeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEecc
Q 010494 336 LTLDKAGKEVLGTAIKVVITK---DSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGA 412 (509)
Q Consensus 336 ~~~~~~~~~~lG~~~~i~v~~---~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G 412 (509)
++++++++++|+|+.|++.+ ++|++|++|++. ++++||+|||
T Consensus 279 -~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~----------------------------------~~~~TI~lrG 323 (472)
T cd03341 279 -RLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKED----------------------------------SKIATIVLRG 323 (472)
T ss_pred -ccccCCHhHCCCceEEEEEEECCeeEEEEEccCCC----------------------------------CCeEEEEEEC
Confidence 58888899999999999754 899999987531 3689999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 010494 413 QTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGV 491 (509)
Q Consensus 413 ~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~ 491 (509)
+|+.+++|++|+++||++++++++++| +|||||++|++++.+|++++...++.++ +++++|++||++||++|++|||+
T Consensus 324 ~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~~~~~~~-~~~~~~a~al~~ip~~L~~NaG~ 402 (472)
T cd03341 324 ATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPGLEQ-YAIKKFAEAFEVVPRTLAENAGL 402 (472)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhccCCHHH-HHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999 9999999999999999998777777776 58999999999999999999999
Q ss_pred ChHHHHHHHhc
Q 010494 492 NGNFVVDQVSA 502 (509)
Q Consensus 492 d~~~ii~~l~~ 502 (509)
|+.+++.+|++
T Consensus 403 d~~~~~~~l~~ 413 (472)
T cd03341 403 DATEVLSELYA 413 (472)
T ss_pred CHHHHHHHHHH
Confidence 99999999975
No 35
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-72 Score=545.89 Aligned_cols=407 Identities=22% Similarity=0.316 Sum_probs=362.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
+++|.+|+.+.+.++++++|||||+||||||.+..|+++|||||+|||+.|++-||+ |+|+++++..||.++||||
T Consensus 25 ~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~----akmLvelS~aQD~eaGDGT 100 (534)
T KOG0358|consen 25 EQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPA----AKMLVELSAAQDSEAGDGT 100 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChH----HHHHHHhhhhccccccCCc
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC--cH-HHHHHhhhhcCC------chhhhhH
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE--DH-ELADVAAVSAGN------DYTVGKM 190 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~-~l~~va~ts~~~------~~~l~~l 190 (509)
||+|+||++||+.+.+|+++|+||+.|...|+.|.+.++++|++++.|++ |. .|.+-|+||+|+ ...++.+
T Consensus 101 TsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsdre~Li~~atTsLnSKvvSq~s~llapm 180 (534)
T KOG0358|consen 101 TSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSDRESLIKSATTSLNSKVVSQYSSLLAPM 180 (534)
T ss_pred eEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCcHHHHHHHHHhHhhHHHHHhhccccchH
Confidence 99999999999999999999999999999999999999999999988765 55 688899999885 4788999
Q ss_pred HHHHHHhhccC--------CcEE--EecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccC----
Q 010494 191 ISDALQQVGRN--------GVVT--IEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI---- 256 (509)
Q Consensus 191 i~~Ai~~v~~~--------g~I~--v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i---- 256 (509)
.+||+.++-.. ..|+ ++.||.++|+ ++++|++|++.-... ..|..++++||-++.+.|
T Consensus 181 AVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDt-e~i~glvl~~~~~~~-------~gptriekAkIglIQF~iS~PK 252 (534)
T KOG0358|consen 181 AVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDT-ELIKGLVLTQKASKS-------AGPTRIEKAKIGLIQFQISPPK 252 (534)
T ss_pred HHHHHHhccCcccccccchhhhhhHHhhCCccchh-hhhcceEEeeecccC-------CCcchhhhceeeEEEEEecCCC
Confidence 99999998542 1233 3599999999 999999999864421 246688999999987643
Q ss_pred ---------CCHHH-----------HHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccc
Q 010494 257 ---------KNPKD-----------MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSH 316 (509)
Q Consensus 257 ---------~~~~~-----------l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~ 316 (509)
++..+ ++++++++++.|.|+++++++|=.++++.|..|-+. .++|++|+ |+.++
T Consensus 253 tdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~-klkimvik-----dieRe 326 (534)
T KOG0358|consen 253 TDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLA-KLKIMVIK-----DIERE 326 (534)
T ss_pred CCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHH-hCcEEEEc-----cccHh
Confidence 33332 456788999999999999999988888877766653 46899998 78899
Q ss_pred hHHHHHHHhCCeeeecccCccccCCCccccCcceEEEEe----cCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHH
Q 010494 317 YLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT----KDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKN 392 (509)
Q Consensus 317 ~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v~----~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~ 392 (509)
++|.+++.+|+++++ +++.++++.||+++.++.. +.+++-+.|+.++
T Consensus 327 diefick~l~c~Pia-----~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~------------------------ 377 (534)
T KOG0358|consen 327 DIEFICKTLGCKPIA-----DIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNA------------------------ 377 (534)
T ss_pred hHHHHHhhcCCeecc-----hhhhcChhhcCcchhhhhcccCCCccEEEEEEeecC------------------------
Confidence 999999999999999 6999999999999999753 4477888876543
Q ss_pred HHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHH
Q 010494 393 ILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGA 471 (509)
Q Consensus 393 ~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~ 471 (509)
|..++|++||++...++|.+|++|||||++|+.++.. .+||||+.|++++..|.+++....+.+.+ .+
T Consensus 378 ----------g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEieia~~L~~~a~t~eG~~~y-c~ 446 (534)
T KOG0358|consen 378 ----------GRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIEIALRLSALARTLEGVEAY-CW 446 (534)
T ss_pred ----------CCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchHHHHHHHHHHhhhccchhH-HH
Confidence 5678999999999999999999999999999999987 99999999999999999999988898886 59
Q ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc
Q 010494 472 EIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHK 504 (509)
Q Consensus 472 ~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~~ 504 (509)
+.|++|||.+|.+||||||++|.+++.+|++.+
T Consensus 447 rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~h 479 (534)
T KOG0358|consen 447 RAFADALEVIPYTLAENAGLNPIATVTELRNRH 479 (534)
T ss_pred HHHHHHHhcccHhHHhhCCCChhhHHHHHHHHH
Confidence 999999999999999999999999999998763
No 36
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=1.4e-69 Score=583.77 Aligned_cols=386 Identities=30% Similarity=0.499 Sum_probs=349.1
Q ss_pred HHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCcchHHhHHHHHHHH
Q 010494 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAE 132 (509)
Q Consensus 53 la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGTTt~viLa~~Ll~~ 132 (509)
|+++|++||||+|++|||+++.|+++|||||+||+++++++||+ ++|+++++++|++++||||||+|+|+++|+++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~----~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~ 76 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPI----AKLLVEASKSQDEEVGDGTTSVVLLACELLRN 76 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHH----HHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccch----hhhHHHhHHHHHhhhccccceeeecccchhhh
Confidence 68999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcH--HHHHHhhhhcCCc------hhhhhHHHHHHHhhccC---
Q 010494 133 GVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH--ELADVAAVSAGND------YTVGKMISDALQQVGRN--- 201 (509)
Q Consensus 133 ~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~--~l~~va~ts~~~~------~~l~~li~~Ai~~v~~~--- 201 (509)
+.+++++|+||..|++||+.|.+.+++.|++++++++.. .++++|+|+++++ +.|++++++|+..+..+
T Consensus 77 ~~~li~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~~ 156 (485)
T PF00118_consen 77 ALKLIKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDDESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFDL 156 (485)
T ss_dssp HHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTSHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHHG
T ss_pred hhhhhhccccccchhhhhhhhhhhhhhhhhhhhccccccchhhhhhhcccccccccccchhhhhhhHHHHHHhhcccccc
Confidence 999999999999999999999999999999999988763 8999999999987 89999999999443221
Q ss_pred Cc--EEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHH------------------
Q 010494 202 GV--VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKD------------------ 261 (509)
Q Consensus 202 g~--I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~------------------ 261 (509)
+. +....|++++|| ++++|++|+++|.++ +|++.+++|+|++++++++...+
T Consensus 157 ~~i~i~~i~g~~~~dS-~li~Giv~~~~~~~~-------~~~~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 228 (485)
T PF00118_consen 157 DNIKIIKIPGGSISDS-ELINGIVLDKGFSSP-------NMPKKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSK 228 (485)
T ss_dssp GGEEEEEEESSSSGGE-EEESEEEESSSBSST-------TSBSEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHH
T ss_pred cchhhhhhcccccccc-ccccceeeecccccc-------ccccccccceEEeeecccccccccccccchhhHHHHHHHHh
Confidence 11 334588888998 899999999999887 46778899999999998876655
Q ss_pred -----HHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCc
Q 010494 262 -----MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGL 336 (509)
Q Consensus 262 -----l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~ 336 (509)
+.++++++.+.|+|+||++++|++.++++|..++ |.+++ ++++++|++|+.+||+++++
T Consensus 229 ~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~------I~~i~-----~v~~~~l~~i~~~tg~~ii~----- 292 (485)
T PF00118_consen 229 QEKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNG------ILVIR-----RVSKEDLERIARATGASIIS----- 292 (485)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCT------HEEES-----SEHHHHHHHHHHHHTSBEBS-----
T ss_pred hhhhhhccccceEeeeccceeeeecccccccchhhhhhh------hhccc-----cchHHHHHhhhcccCCcEec-----
Confidence 7889999999999999999999999999998875 45554 66789999999999999999
Q ss_pred cccCCCccccCcceEE---EEecCeEEEEec--CCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEec
Q 010494 337 TLDKAGKEVLGTAIKV---VITKDSTLIVTD--GSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVG 411 (509)
Q Consensus 337 ~~~~~~~~~lG~~~~i---~v~~~~~~~~~g--~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~ 411 (509)
++++++++.+|+|+.+ ++++++|+++++ | .++.++||+||
T Consensus 293 ~~~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~-----------------------------------~~~~~~Till~ 337 (485)
T PF00118_consen 293 SLDDLSDEDLGFCKSVEEREIGNKKYIFIEGIGC-----------------------------------LSSKICTILLR 337 (485)
T ss_dssp SCGGSTGGGSEEEEEEEEEEETSSEEEEEEEHSE-----------------------------------SSSSEEEEEEE
T ss_pred ccccccchhhhhhhhhhhcccccccccccccccc-----------------------------------cccCceEEEec
Confidence 5788888889999999 567899999984 3 24578999999
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 010494 412 AQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAG 490 (509)
Q Consensus 412 G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG 490 (509)
|+|+.+++|++++++||+++++++++++ +|||||++|++|+++|++++...++.++ +++++|++||+.||++|++|||
T Consensus 338 g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~-~~~~~~a~aL~~ip~~L~~NaG 416 (485)
T PF00118_consen 338 GPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSLSGKEQ-LAIEAFADALESIPKTLAQNAG 416 (485)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCSSSHHH-HHHHHHHHHTTHHHHHHHHHTT
T ss_pred cccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhcccCchh-hhHHHHHHHHHHhhhhhhhccC
Confidence 9999999999999999999999999987 9999999999999999988887777766 5899999999999999999999
Q ss_pred CChHHHHHHHhc
Q 010494 491 VNGNFVVDQVSA 502 (509)
Q Consensus 491 ~d~~~ii~~l~~ 502 (509)
+|+.+++++|++
T Consensus 417 ~~~~~~~~~l~~ 428 (485)
T PF00118_consen 417 LDSSEVISKLKS 428 (485)
T ss_dssp STHHHHHHHHHH
T ss_pred CCceeeehhhHh
Confidence 999999999988
No 37
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-66 Score=508.09 Aligned_cols=400 Identities=24% Similarity=0.359 Sum_probs=352.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecC--CCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCC
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNK--YGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGD 117 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~--~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GD 117 (509)
++||...|.|...+.|+|||||||+||+||+... .|.+.+||||+||||++.+++|+ ||+++++++-||.++||
T Consensus 17 e~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpa----AkvLv~~S~vQD~EvGD 92 (527)
T KOG0363|consen 17 ENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPA----AKVLVDISKVQDDEVGD 92 (527)
T ss_pred hhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCch----hhheeccccccccccCC
Confidence 8999999999999999999999999999999863 56799999999999999999999 99999999999999999
Q ss_pred CcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCc---H---HHHHHhhhhcCC------ch
Q 010494 118 GCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVED---H---ELADVAAVSAGN------DY 185 (509)
Q Consensus 118 GTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~---~---~l~~va~ts~~~------~~ 185 (509)
|||||++|+.+||+|+.+|+.+.+||+.|+.||+.|...+++.|.+.++..++ + +|.++|+|.+.+ ++
T Consensus 93 GTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~ke 172 (527)
T KOG0363|consen 93 GTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKE 172 (527)
T ss_pred CceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999988876542 1 899999998764 58
Q ss_pred hhhhHHHHHHHhhccCCc-----EEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeeccc-----
Q 010494 186 TVGKMISDALQQVGRNGV-----VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK----- 255 (509)
Q Consensus 186 ~l~~li~~Ai~~v~~~g~-----I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~----- 255 (509)
+|++++++|+.++...++ |.++.||+++|| .+-+|+.+++.+-. +.|+.++||+||+-|-+
T Consensus 173 hFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~dS-fLDeGFlL~K~igv--------~qpkriena~iLIANT~mDtDK 243 (527)
T KOG0363|consen 173 HFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLEDS-FLDEGFLLDKKIGV--------NQPKRIENAKILIANTPMDTDK 243 (527)
T ss_pred HHHHHHHHHHHHhcCCCCccceeeehhcCCccccc-cccccceeccccCC--------CCcccccccceEEecCCCcccc
Confidence 999999999999865432 445699999999 69999999886432 35778999999997642
Q ss_pred ---------CCCHHH-----------HHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCcc
Q 010494 256 ---------IKNPKD-----------MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKS 315 (509)
Q Consensus 256 ---------i~~~~~-----------l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~ 315 (509)
+++..+ +...++++.+.|+|+.|-..=|-+...++|... +|+++....|.
T Consensus 244 vKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~da------gi~aIEHADFd---- 313 (527)
T KOG0363|consen 244 VKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADA------GIMAIEHADFD---- 313 (527)
T ss_pred eeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhc------Ccceeecccch----
Confidence 334322 334578899999999887776776667766544 57888766553
Q ss_pred chHHHHHHHhCCeeeecccCccccCCCccccCcceEEE---EecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHH
Q 010494 316 HYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVV---ITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKN 392 (509)
Q Consensus 316 ~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~---v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~ 392 (509)
-+||++..|||.+.+ ++++++...+|+|+.++ ++++++.-|.||.
T Consensus 314 -GiERLalvtGGeI~S-----TFd~p~~~klG~C~~IeeimiGed~li~FSGv~-------------------------- 361 (527)
T KOG0363|consen 314 -GIERLALVTGGEIVS-----TFDNPELVKLGECDLIEEIMIGEDKLIKFSGVK-------------------------- 361 (527)
T ss_pred -hHHHHhhcccceeee-----ccCCcchhccccchhhHHHhcCccceeeecccc--------------------------
Confidence 579999999999999 79999999999999997 5899999999984
Q ss_pred HHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHH
Q 010494 393 ILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGA 471 (509)
Q Consensus 393 ~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~ 471 (509)
.|..|||++||+|.+.++|.+|++|||||++...+++. ++.||||.||..+..+.+++...++++-. ++
T Consensus 362 ---------~GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea~-Ai 431 (527)
T KOG0363|consen 362 ---------LGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPGKEAL-AI 431 (527)
T ss_pred ---------cccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHHHHHHHHHHHHhhCCchhhH-HH
Confidence 24578999999999999999999999999999999997 99999999999999999999999888874 89
Q ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc
Q 010494 472 EIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHK 504 (509)
Q Consensus 472 ~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~~ 504 (509)
++|++||.++|.+||.|+|+|+.+++.+|++.+
T Consensus 432 eAfarAL~qlPtiiaDNaG~dsaelva~Lra~h 464 (527)
T KOG0363|consen 432 EAFARALRQLPTIIADNAGYDSAELVAQLRAEH 464 (527)
T ss_pred HHHHHHHHhcchhhhccCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999864
No 38
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-64 Score=505.50 Aligned_cols=405 Identities=23% Similarity=0.324 Sum_probs=357.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
+.+|.+|..++..++++|++||||-|+|||++++.|++.+||||+|||+.+.++||+ +|++++.++.||+++||||
T Consensus 18 ~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa----~KiLvelaq~qd~evgDgt 93 (545)
T KOG0360|consen 18 ERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPA----AKVLVELAQLQDEEVGDGT 93 (545)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchH----HHHHHHHHHhccccccCCc
Confidence 678999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHh-cCcccCcH---HHHHHhhhhcCC------chhhhh
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKL-TSREVEDH---ELADVAAVSAGN------DYTVGK 189 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~-~s~~v~~~---~l~~va~ts~~~------~~~l~~ 189 (509)
|++++++++|++.+.+|+..++||+.|+.||+.|+..+++++.+ .++|++.. .|.++++|++++ .++|++
T Consensus 94 tsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~ 173 (545)
T KOG0360|consen 94 TSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFFTE 173 (545)
T ss_pred eEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhcceecccchHHHHH
Confidence 99999999999999999999999999999999999999999976 57777653 789999999875 489999
Q ss_pred HHHHHHHhhcc---CC---------cEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeeccc--
Q 010494 190 MISDALQQVGR---NG---------VVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK-- 255 (509)
Q Consensus 190 li~~Ai~~v~~---~g---------~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~-- 255 (509)
+++||+..+.- +| +|-+-.|.+..|| .++.|+.+.+...+. .|+..++|+||+++|+.
T Consensus 174 ~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS-~l~~GyaLnc~~asq-------~m~~~i~~~Kiacld~~Lq 245 (545)
T KOG0360|consen 174 MVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIES-MLLPGYALNCSVASQ-------MMPLRIKNAKIACLDFTLQ 245 (545)
T ss_pred HHHHHHHHHhhcccCCceeccccceeEEecCCccchhh-eeecceeeeccHhhh-------ccccccccceeeeEecccc
Confidence 99999998742 22 1334589999999 799999999886654 57889999999999974
Q ss_pred -----------CCCHHHHHHH-----------HHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccC
Q 010494 256 -----------IKNPKDMFKI-----------LDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGER 313 (509)
Q Consensus 256 -----------i~~~~~l~~~-----------le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~ 313 (509)
|.+++++.++ ++++...|+|+|+++++|||.++.+|+.+. ++||| +.
T Consensus 246 k~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veag------amAVr-----R~ 314 (545)
T KOG0360|consen 246 KTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAG------AMAVR-----RC 314 (545)
T ss_pred cccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcc------hhhhH-----HH
Confidence 4566554432 567889999999999999999999998884 67776 78
Q ss_pred ccchHHHHHHHhCCeeeecccCcc-ccCCCccccCcceEEE---EecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHH
Q 010494 314 KSHYLDDIAILTGGLVIRDEMGLT-LDKAGKEVLGTAIKVV---ITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERF 389 (509)
Q Consensus 314 ~~~~L~~ia~~tG~~ii~~~~~~~-~~~~~~~~lG~~~~i~---v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~ 389 (509)
++.+|++|+++||++++++..++. -+.+.+..+|+|+.|. +++|++.++.|..-
T Consensus 315 ~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka---------------------- 372 (545)
T KOG0360|consen 315 KKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKA---------------------- 372 (545)
T ss_pred HHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCcc----------------------
Confidence 899999999999999999643331 1356778999999996 46889999987421
Q ss_pred HHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHH
Q 010494 390 QKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQK 468 (509)
Q Consensus 390 ~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~ 468 (509)
..|.|++||++++.++|.+|+++||++++|..++++ +|||||++|.+++-+|++++.+..++||.
T Consensus 373 --------------~~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~aLs~yle~~a~s~~srE~l 438 (545)
T KOG0360|consen 373 --------------TSASIILRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETALSIYLENFATSVGSREQL 438 (545)
T ss_pred --------------ceeeEEEecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHHHHHHHHHhhcccCccHHHH
Confidence 267899999999999999999999999999999999 99999999999999999999988899997
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc
Q 010494 469 IGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHK 504 (509)
Q Consensus 469 ~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~~ 504 (509)
++.-|+.||..+|++|+-|++.|+.|++.++++.+
T Consensus 439 -aiaefa~all~ipktla~naa~Dstelvt~lra~H 473 (545)
T KOG0360|consen 439 -AIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYH 473 (545)
T ss_pred -HHHHHHHHHhcchHHHhhhhccccccccccccCCc
Confidence 57778889999999999999999999999998764
No 39
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-62 Score=493.04 Aligned_cols=402 Identities=23% Similarity=0.318 Sum_probs=352.1
Q ss_pred cHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCC
Q 010494 39 DGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDG 118 (509)
Q Consensus 39 ~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDG 118 (509)
++++...|+++|++++++++|+|||+||||||+|..|++.+|||.+||+|+++++||+ |||++++++.|+++.|||
T Consensus 24 ~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HPa----akllv~a~~~q~~~iGDg 99 (537)
T KOG0362|consen 24 EEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHPA----AKLLVEATQMQEEEIGDG 99 (537)
T ss_pred chHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCcH----HHHHHHHHHHHHHhhCCC
Confidence 4889999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred cchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCc-ccCcH-HHHHHhhhh-----cCCchhhhhHH
Q 010494 119 CTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSR-EVEDH-ELADVAAVS-----AGNDYTVGKMI 191 (509)
Q Consensus 119 TTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~-~v~~~-~l~~va~ts-----~~~~~~l~~li 191 (509)
|+++|+|+++||++|.++|..|++|.+|++||+.|.+.+++.|.++.+ .+.|. +...+++++ ..+++.+++++
T Consensus 100 tnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~~~~rs~i~skq~~~ed~l~~lV 179 (537)
T KOG0362|consen 100 TNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDKEWALRSVIMSKQYGNEDFLTKLV 179 (537)
T ss_pred ceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChHHHHHHHHHHhhcchHHHHHHHH
Confidence 999999999999999999999999999999999999999999998754 22222 222333333 34579999999
Q ss_pred HHHHHhhccCC-----c--EEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeeccc---------
Q 010494 192 SDALQQVGRNG-----V--VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK--------- 255 (509)
Q Consensus 192 ~~Ai~~v~~~g-----~--I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~--------- 255 (509)
++|+..+.+.+ + +.+..|+++++| .+++|++|++. +++....-+.++|.++.|+
T Consensus 180 a~ac~si~p~~~FnvdnIrVcKi~Gg~l~~S-~Vv~GmVfkr~---------~eG~v~~ak~arvAvf~cP~d~~~TEtk 249 (537)
T KOG0362|consen 180 AKACVSILPLMSFNVDNIRVCKILGGGLEDS-CVVCGMVFKRD---------PEGEVKSAKDARVAVFACPFDIAQTETK 249 (537)
T ss_pred HHHHHhhcccccccccceEEEEEecCCcccc-eeeEEEEeccc---------cCCcccccccceeEEEecCCCcccccCc
Confidence 99999998863 1 345699999999 89999999987 3455567788999999987
Q ss_pred ----CCCHHHHHHH-----------HHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHH
Q 010494 256 ----IKNPKDMFKI-----------LDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDD 320 (509)
Q Consensus 256 ----i~~~~~l~~~-----------le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ 320 (509)
|++++++.+| ++.+...|+++|++...+++.+|.++ |++ +|++++.++ +.+|.|
T Consensus 250 gTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhfl--nky----~ImVlqi~S-----k~eLrr 318 (537)
T KOG0362|consen 250 GTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFL--NKY----KIMVLQINS-----KFDLRR 318 (537)
T ss_pred ceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhh--ccc----cEEEEEecc-----HhhHHH
Confidence 6777776653 56778899999999999999888664 765 699999876 678999
Q ss_pred HHHHhCCeeeecccCccccCCCccccCcceEEEE---ecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 010494 321 IAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVI---TKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNER 397 (509)
Q Consensus 321 ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v---~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r 397 (509)
+++..||.+++ .+..+.+..+|+|+++.. +++.++.|.....
T Consensus 319 lcrtvGA~~l~-----rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~------------------------------ 363 (537)
T KOG0362|consen 319 LCRTVGATALP-----RLFPPAPEELGYCDSVSTQEIGDTLVVVFRWEST------------------------------ 363 (537)
T ss_pred HHHHcCCccch-----hccCCCCccccccceeeeeecCCceEEEEeeccC------------------------------
Confidence 99999999999 588888899999999964 5666666653211
Q ss_pred HhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHH
Q 010494 398 IARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKR 476 (509)
Q Consensus 398 ~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~ 476 (509)
.+.++||++||+|+..+|+.||.+.|++++.+...+++ ++||+|++|+++++.|.++....++.+|+ +++.|++
T Consensus 364 ----~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q~-Aik~fa~ 438 (537)
T KOG0362|consen 364 ----GTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQL-AIKKFAE 438 (537)
T ss_pred ----CCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccccCCchhHHHHHHHHHHhcccCCCcchh-HHHHHHH
Confidence 13589999999999999999999999999999999998 99999999999999999999999999996 7999999
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHhcccC
Q 010494 477 ALSYPTKLIAKNAGVNGNFVVDQVSAHKC 505 (509)
Q Consensus 477 AL~~~~~~L~~NaG~d~~~ii~~l~~~~~ 505 (509)
||+.+|++|+||||++..+++.+|++-+.
T Consensus 439 Ale~~PktlaEnagl~~~evia~ly~~h~ 467 (537)
T KOG0362|consen 439 ALEVLPKTLAENAGLAVTEVIAKLYAVHQ 467 (537)
T ss_pred HhccccHhHHHhcCCcHHHHHHHHHHhhc
Confidence 99999999999999999999999977543
No 40
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-62 Score=487.18 Aligned_cols=417 Identities=19% Similarity=0.284 Sum_probs=373.3
Q ss_pred CCcceEEecCCCCCCCCCCCCCcccccchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccch
Q 010494 4 LSTPIFAISFKNPTLPKRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDG 83 (509)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG 83 (509)
|-.|+|.++.+++|.+ | ..+...|+++.++++|.++++|||+.|.||+.++.|.+..||||
T Consensus 1 m~apv~~~~~~~~re~-----------------g--~kvq~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg 61 (527)
T KOG0364|consen 1 MQAPVLVLSKNTKRES-----------------G--RKVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDG 61 (527)
T ss_pred CCCceeecccccCcCc-----------------c--ccccccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCc
Confidence 6789999999999986 2 23445788899999999999999999999999999999999999
Q ss_pred hhhhccccccCcccchHhHHHHHHHHhhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHh
Q 010494 84 ETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKL 163 (509)
Q Consensus 84 ~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~ 163 (509)
..|+++|++.||+ |+-+.+++.+||+++|||||||++|++++|.++..++++|+||+.|+++|.+|++.++..+++
T Consensus 62 ~ailrei~Vahpa----aksmiel~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~ 137 (527)
T KOG0364|consen 62 NAILREIDVAHPA----AKSMIELSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDK 137 (527)
T ss_pred HHHHHHHhhcCcc----hhhHhhhhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCcH---HHHHHhhhhcC------CchhhhhHHHHHHHhhccC-Cc---------EEEecCCCcccceEEeeceEE
Q 010494 164 TSREVEDH---ELADVAAVSAG------NDYTVGKMISDALQQVGRN-GV---------VTIEKGKCTENSLEIVEGMRF 224 (509)
Q Consensus 164 ~s~~v~~~---~l~~va~ts~~------~~~~l~~li~~Ai~~v~~~-g~---------I~v~~g~~~~ds~~li~Gi~~ 224 (509)
++++++.+ .+.++...+.. +.+..+++..+|+++++.+ |. +.+.+|+.+++| ++++|+.+
T Consensus 138 ~~~~~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~~s-~vl~Gv~~ 216 (527)
T KOG0364|consen 138 ISIPVDVKDQAKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLEDS-CVLKGVMI 216 (527)
T ss_pred hcccCCcccHHHHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCccccccc-ceecceee
Confidence 98887743 66666666543 4578899999999999876 32 234699999999 89999999
Q ss_pred eccCCCCccccCcCCceeEeeceeeEeecccCCC------------------------HHHHHHHHHHHHhcCCCeEEEe
Q 010494 225 DRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKN------------------------PKDMFKILDSAVKEKYPIVIVA 280 (509)
Q Consensus 225 ~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~------------------------~~~l~~~le~i~~~~~~lvi~~ 280 (509)
.+...||. |+..++||+|+++|+++.. -+++..+.+.+....+++|++.
T Consensus 217 nkdv~Hpk-------mrr~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVite 289 (527)
T KOG0364|consen 217 NKDVTHPK-------MRRAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITE 289 (527)
T ss_pred ccccCcHH-------HHHHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEec
Confidence 99999984 6778999999999997521 1234567788889999999999
Q ss_pred ccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCc-ceEEEE---ec
Q 010494 281 EDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGT-AIKVVI---TK 356 (509)
Q Consensus 281 ~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~-~~~i~v---~~ 356 (509)
+++++.+.++|..++ +.++| ++|+.+-.|++++||+++++ +++++...+.|+ |+.+++ ++
T Consensus 290 kG~sdla~hyl~k~~------iT~~r-----r~rKtDn~ria~acga~iv~-----rpedl~e~dvGt~agLf~~kK~gd 353 (527)
T KOG0364|consen 290 KGVSDLAQHYLLKAN------ITAIR-----RLRKTDNNRIARACGARIVN-----RPEDLPERDVGTGAGLFEVKKIGD 353 (527)
T ss_pred cchhHHHHHHHHhcC------chhhh-----hhhccccchhhhhcCceecc-----ChhhCchhccCcccceeeeeccCc
Confidence 999999999998885 45544 88999999999999999999 699999999995 888886 57
Q ss_pred CeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHH
Q 010494 357 DSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAI 436 (509)
Q Consensus 357 ~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al 436 (509)
+.|+||+.|.+|+ .|||++||+|..+++|.+|.+.||+.++|+.+
T Consensus 354 eyf~f~~~Ck~pk-----------------------------------aCtillrg~skdil~e~ernlqda~~varn~i 398 (527)
T KOG0364|consen 354 EYFTFFTDCKEPK-----------------------------------ACTILLRGPSKDILNEVERNLQDAMGVARNVI 398 (527)
T ss_pred hhhhhhhhcCCCc-----------------------------------ceEEEeccCchhHHHHHHHHhhhHHHHHHHhc
Confidence 8999999999884 68999999999999999999999999999999
Q ss_pred hhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 437 EEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 437 ~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
-++ ++|||||+||.+|+.|.+.+...++.+|+ .+++++.||+.+|++|++|||.++...+..+++.
T Consensus 399 i~PklvPGGGAtEMAvs~~L~qksa~~~GVekw-PY~Ava~AlEviPrtliqncGan~Ir~lTalr~k 465 (527)
T KOG0364|consen 399 INPKLVPGGGATEMAVSHELRQKSALMTGVEKW-PYGAVAGALEVIPRTLIQNCGANPIRALTALRAK 465 (527)
T ss_pred cCCcccCCccHHHHHHHHHHHHHHhhccchhcc-chhhhhcCceeccHHHHhhcCccHHHHHHHHHHH
Confidence 998 99999999999999999988788888887 5999999999999999999999999999988765
No 41
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-58 Score=455.40 Aligned_cols=400 Identities=21% Similarity=0.340 Sum_probs=352.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
..|.+.|+.+...+.+.+++.+||+|..||++++.|++++|+||.+.+++|+++||. +-++..+|..||+..||||
T Consensus 16 ~aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPT----a~lIakaatAqdd~tGDGt 91 (520)
T KOG0359|consen 16 QAALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPT----ASLIAKVATAQDDITGDGT 91 (520)
T ss_pred hcceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCch----HHHHHHHHHHhhcccCCCc
Confidence 357778888888999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHhhhhcCCc------hhhhhHHHH
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGND------YTVGKMISD 193 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~l~~va~ts~~~~------~~l~~li~~ 193 (509)
||+|+|.++|+++|...+..|+||..|..||+.|.+.++++|++.+.+++.+.|..+++++++.+ +.+++++++
T Consensus 92 tS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~ 171 (520)
T KOG0359|consen 92 TSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVDRETLKDVARTSLRTKVHAELADVLTPIVVD 171 (520)
T ss_pred ceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchhHHHHHHHHHHhhcCcccHHHHhHhHHHHHh
Confidence 99999999999999999999999999999999999999999998888887778999999999863 678889999
Q ss_pred HHHhhcc-CCcEE-------EecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCC--------
Q 010494 194 ALQQVGR-NGVVT-------IEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIK-------- 257 (509)
Q Consensus 194 Ai~~v~~-~g~I~-------v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~-------- 257 (509)
|+..+.+ ++.|. .-+..+..|+ .+++|+++|+|-.||- ||+.++|++||++|.+++
T Consensus 172 aVl~i~~~~~~idl~mveim~mq~~s~~dT-~~v~glvLdhg~rHpd-------mp~~~e~a~iL~~NvSLEYEK~Eins 243 (520)
T KOG0359|consen 172 SVLCIRRQEEPIDLFMVEIMEMQHKSLHDT-SLVQGLVLDHGARHPD-------MPRRVEDAYILICNVSLEYEKPEINS 243 (520)
T ss_pred hheeeccCCCCcchhHHHhhhhccCchhhh-HHhhhhhccCCCCCcc-------cccchhceEEEEeecccccccccccc
Confidence 9998873 33321 1255677888 7999999999999984 788999999999997532
Q ss_pred -----CHHHHH-----------HHHHHHHhcCC---CeEEE-eccchHHHHHHHHHhcccccceeeeecCcccccCccch
Q 010494 258 -----NPKDMF-----------KILDSAVKEKY---PIVIV-AEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHY 317 (509)
Q Consensus 258 -----~~~~l~-----------~~le~i~~~~~---~lvi~-~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~ 317 (509)
+.+|-. +-+.++.+.+. .+|++ +++|||..|+.|..+ +|+|+| +-++..
T Consensus 244 gffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~------gIlaLR-----RAKRRN 312 (520)
T KOG0359|consen 244 GFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKS------GILALR-----RAKRRN 312 (520)
T ss_pred chhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhc------chHHHH-----HHhhhh
Confidence 233211 12334444432 45555 899999999999877 467776 667889
Q ss_pred HHHHHHHhCCeeeecccCccccCCCccccCcceEEEE---ecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHH
Q 010494 318 LDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVI---TKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNIL 394 (509)
Q Consensus 318 L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v---~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l 394 (509)
|||+..+|||..+. +++|++++.||+|+.+++ ++++|+|+++|.+|
T Consensus 313 mERL~lacGG~a~n-----svddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p-------------------------- 361 (520)
T KOG0359|consen 313 MERLVLACGGEAVN-----SVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNP-------------------------- 361 (520)
T ss_pred HHHHHHhhccceec-----ccccCChhhccccceeEEeeccceeeEeeecCCCC--------------------------
Confidence 99999999999998 699999999999999985 69999999999988
Q ss_pred HHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHH
Q 010494 395 NERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEI 473 (509)
Q Consensus 395 ~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~ 473 (509)
+.|||+++|||.+.+.+.+++++|++++++++++++ ++||+|+.|..++.+|+...++.+++.+ +|+++
T Consensus 362 ---------~S~TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~~va~~~~lr~~k~~vkgra~-~g~~a 431 (520)
T KOG0359|consen 362 ---------SSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVALGRHLRESKKSVKGRAY-LGVKA 431 (520)
T ss_pred ---------cceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHHHHHHHHHhhhccCchhh-hhHHH
Confidence 368999999999999999999999999999999998 9999999999999999988888888888 59999
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 474 FKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 474 ~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
|++||..+|++|++|+|+|+.+.+.+|...
T Consensus 432 fa~all~ipk~La~nsg~D~qe~l~~l~~e 461 (520)
T KOG0359|consen 432 FANALLVIPKTLAKNSGLDEQETLVSLKKE 461 (520)
T ss_pred HHhhhhhhhHHHHHhcCCchHHHHHHHHHh
Confidence 999999999999999999999999887554
No 42
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-54 Score=420.33 Aligned_cols=313 Identities=25% Similarity=0.357 Sum_probs=288.3
Q ss_pred hhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhh
Q 010494 32 KEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGART 111 (509)
Q Consensus 32 k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~ 111 (509)
|...+| -++.++++-+..+++.++++|+||+|++|+++.+.|++.+|||| .|+. ++|+...+.+|
T Consensus 21 ~~Ri~G--~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~I----akLmv~LS~sq 85 (400)
T KOG0357|consen 21 KDRLFG--LDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQI----AKLIVILSKSQ 85 (400)
T ss_pred CchhhH--HHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHH----HHHHHHhcccc
Confidence 345667 68899999999999999999999999999999999999999999 6788 99999999999
Q ss_pred hhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHhhhhcCCchhhhhHH
Q 010494 112 NDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMI 191 (509)
Q Consensus 112 d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~l~~va~ts~~~~~~l~~li 191 (509)
|.++|||||.+++|++.+++++..++..|+||..|..||+.+...+++.|++.+.+++
T Consensus 86 d~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e---------------------- 143 (400)
T KOG0357|consen 86 DDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE---------------------- 143 (400)
T ss_pred hhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc----------------------
Confidence 9999999999999999999999999999999999999999999999999887665432
Q ss_pred HHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHHHHHHHHHHHh
Q 010494 192 SDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVK 271 (509)
Q Consensus 192 ~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~i~~ 271 (509)
+..+++.+++
T Consensus 144 ----------------------------------------------------------------------f~emi~~vK~ 153 (400)
T KOG0357|consen 144 ----------------------------------------------------------------------FEEMIQQIKE 153 (400)
T ss_pred ----------------------------------------------------------------------HHHHHHHHHh
Confidence 3557889999
Q ss_pred cCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceE
Q 010494 272 EKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIK 351 (509)
Q Consensus 272 ~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~ 351 (509)
.|.+++||+|+|||+|-++|..|++ -||||. ...++|-||++|||+++. ++++++++.||+|+.
T Consensus 154 ~ga~l~icqwgfddeanhll~~n~l------pavrwV-----GGpEiEliAiaT~grIVp-----rF~eL~~~kLG~agl 217 (400)
T KOG0357|consen 154 TGANLAICQWGFDDEANHLLLQNNL------PAVRWV-----GGPEIELIAIATGGRIVP-----RFSELTAEKLGFAGL 217 (400)
T ss_pred hCCcEEEEecccCchhhhHHhhcCC------Cceeec-----CCcceEEEEeecCCeeec-----cHhhhCHhhccccce
Confidence 9999999999999999999999965 477744 466889999999999999 699999999999999
Q ss_pred EEE-----ecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHH
Q 010494 352 VVI-----TKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIE 426 (509)
Q Consensus 352 i~v-----~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~ 426 (509)
|.. ++|++.+++.|++.+ ..||.|||.+..+++|.+|++|
T Consensus 218 VrE~sfgttkdkmlviEqc~nsk-----------------------------------aVTifvRg~Nkmii~Eakrslh 262 (400)
T KOG0357|consen 218 VREISFGTTKDKMLVIEQCKNSK-----------------------------------AVTIFVRGGNKMIIEEAKRSLH 262 (400)
T ss_pred EEEEecccccceEEEEEecCCCc-----------------------------------eEEEEEecCcceeHHHHHHHhh
Confidence 974 489999999998764 5689999999999999999999
Q ss_pred HHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 427 DALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 427 dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
||||++|+.+++. +|+|||++|+.||-++...+.++++.||+ ++.+|++||++||..||||+|++|.+.++++++.
T Consensus 263 dalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eqy-a~rafa~ale~ipmalaensgl~pi~~ls~~ka~ 339 (400)
T KOG0357|consen 263 DALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQY-AFRAFADALESIPMALAENSGLDPIETLSDVKAR 339 (400)
T ss_pred hhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHH-HHHHHHHHHhhcchhhhhccCCCchhhhhHhHHH
Confidence 9999999999998 99999999999999999999999999997 7999999999999999999999999999998765
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.96 E-value=2.8e-28 Score=234.42 Aligned_cols=191 Identities=33% Similarity=0.462 Sum_probs=168.2
Q ss_pred HHHHHhhhhcC-----CchhhhhHHHHHHHhhccC------CcE--EEecCCCcccceEEeeceEEeccCCCCccccCcC
Q 010494 172 ELADVAAVSAG-----NDYTVGKMISDALQQVGRN------GVV--TIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQ 238 (509)
Q Consensus 172 ~l~~va~ts~~-----~~~~l~~li~~Ai~~v~~~------g~I--~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~ 238 (509)
.|.++|+|+++ +++.|++++++|+..++++ +.| ...+|+++.|| ++++|++|+++|.+|+
T Consensus 3 ~l~~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~ds-~li~Gv~~~~~~~~~~------ 75 (209)
T cd03333 3 LLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDS-ELVVGVVFDKGYASPY------ 75 (209)
T ss_pred HHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChhhc-eeEeeEEEeccccCCC------
Confidence 47889999998 7899999999999999872 444 44699999999 8999999999999986
Q ss_pred CceeEeeceeeEeecccCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchH
Q 010494 239 KRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYL 318 (509)
Q Consensus 239 ~~~~~~~~~kIll~d~~i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L 318 (509)
|+..++||+|+++++++.. +|+++++|++.++++|..+ +|+||+ ++++++|
T Consensus 76 -m~~~~~n~~Ill~~~~le~-----------------vii~~~~I~~~al~~l~~~------~I~~v~-----~~~~~~l 126 (209)
T cd03333 76 -MPKRLENAKILLLDCPLEY-----------------VVIAEKGIDDLALHYLAKA------GIMAVR-----RVKKEDL 126 (209)
T ss_pred -CCeEcCCCcEEEEeCCeeE-----------------EEEecCcccHHHHHHHHHC------CCEEEE-----eCCHHHH
Confidence 5778999999999999876 8888999999999998775 578887 5678999
Q ss_pred HHHHHHhCCeeeecccCccccCCCccccCcceEEEEe---cCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 010494 319 DDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT---KDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILN 395 (509)
Q Consensus 319 ~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v~---~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~ 395 (509)
+|||++|||++++ ++++++++.||+|+++++. ++++++|.+|..+
T Consensus 127 ~~ia~~tga~ii~-----~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~--------------------------- 174 (209)
T cd03333 127 ERIARATGATIVS-----SLEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGG--------------------------- 174 (209)
T ss_pred HHHHHHHCCEEec-----ccccCChhhceeeeEEEEEEECCeEEEEEEcCCCC---------------------------
Confidence 9999999999999 5888889999999999975 4568899887543
Q ss_pred HHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhh
Q 010494 396 ERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEE 438 (509)
Q Consensus 396 ~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~ 438 (509)
..+||+|||+|+.+++|.+|+++||++++++++++
T Consensus 175 --------~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 175 --------KAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred --------CEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 58899999999999999999999999999999864
No 44
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.95 E-value=1.4e-26 Score=229.48 Aligned_cols=198 Identities=16% Similarity=0.179 Sum_probs=167.1
Q ss_pred CchhhhhHHHHHHHhhccC----------CcE--EEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeE
Q 010494 183 NDYTVGKMISDALQQVGRN----------GVV--TIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLL 250 (509)
Q Consensus 183 ~~~~l~~li~~Ai~~v~~~----------g~I--~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIl 250 (509)
+.+.|++++++|+..+.++ ..| .+.+|+++.|| ++++|++++++..++ +|++.++||||+
T Consensus 19 ~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS-~li~Gvvi~k~~~~~-------~m~~~i~n~kIl 90 (261)
T cd03334 19 WLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDS-EVVDGVVFTKNVAHK-------RMPSKIKNPRIL 90 (261)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHc-EEEeeEEEeCCCCCc-------cCCcccCCCcEE
Confidence 4688999999999988532 123 44699999999 999999999997765 578899999999
Q ss_pred eecccCCC------HHH-----------HHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccC
Q 010494 251 LVDKKIKN------PKD-----------MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGER 313 (509)
Q Consensus 251 l~d~~i~~------~~~-----------l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~ 313 (509)
++++++.. +.+ +..+++++.+.|+++|+++++|++.++++|..+ +|++|+ ++
T Consensus 91 ll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~------gI~~v~-----~v 159 (261)
T cd03334 91 LLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEA------GITLVL-----NV 159 (261)
T ss_pred EEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHC------CCEEEE-----ec
Confidence 99997642 222 334678899999999999999999999999877 467776 66
Q ss_pred ccchHHHHHHHhCCeeeecccCcc-ccCCCccccCcceEEEEe---c-----CeEEEEecCCChhHHHHHHHHHHHHHhh
Q 010494 314 KSHYLDDIAILTGGLVIRDEMGLT-LDKAGKEVLGTAIKVVIT---K-----DSTLIVTDGSTRAAVEKRISEIRSLAEI 384 (509)
Q Consensus 314 ~~~~L~~ia~~tG~~ii~~~~~~~-~~~~~~~~lG~~~~i~v~---~-----~~~~~~~g~~~~~~i~~ri~~l~~~~~~ 384 (509)
++.+|+|||++|||++++ + .++++++.||+|+.|++. + +++++|+||+.+
T Consensus 160 ~~~dl~rIa~~tGa~ii~-----~i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~---------------- 218 (261)
T cd03334 160 KPSVLERISRCTGADIIS-----SMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKE---------------- 218 (261)
T ss_pred CHHHHHHHHHHhCCEEec-----ChhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCC----------------
Confidence 789999999999999999 4 347888999999999864 2 589999998654
Q ss_pred hhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC
Q 010494 385 TEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG 439 (509)
Q Consensus 385 ~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g 439 (509)
..+||+|||+|+..++|.+|+++||+++++++..++
T Consensus 219 -------------------~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~ 254 (261)
T cd03334 219 -------------------LGCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLET 254 (261)
T ss_pred -------------------ceeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 478999999999999999999999999999998775
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=99.16 E-value=2.6e-10 Score=130.09 Aligned_cols=207 Identities=14% Similarity=0.219 Sum_probs=161.6
Q ss_pred chhhhhHHHHHHHhhccC----------Cc--EEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEe
Q 010494 184 DYTVGKMISDALQQVGRN----------GV--VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLL 251 (509)
Q Consensus 184 ~~~l~~li~~Ai~~v~~~----------g~--I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll 251 (509)
.+.+..++.+|...+.++ +. |+.+.+|+..|+ +++.|+++.+...+. .|..++++|+|++
T Consensus 334 ~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS-~vi~Gvv~sKn~~~k-------~M~~~~e~prill 405 (1598)
T KOG0230|consen 334 LDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDS-EVIKGVVCSKNVAHK-------RMATKYENPRILL 405 (1598)
T ss_pred HHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccc-eeeeEEEeecchhhh-------hhhhhccCCceEE
Confidence 467788888888888764 22 455688898999 999999999886653 5778899999999
Q ss_pred ecccC---------CCHHH--------HHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCc
Q 010494 252 VDKKI---------KNPKD--------MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERK 314 (509)
Q Consensus 252 ~d~~i---------~~~~~--------l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~ 314 (509)
+.+++ .+.+. +...+.++...+++++++.++|++.|.++|..- |+.-++ +++
T Consensus 406 l~g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k---~I~lvl--------nvK 474 (1598)
T KOG0230|consen 406 LGGPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDK---GISLVL--------NVK 474 (1598)
T ss_pred EecchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhcc---CeEEEE--------ecc
Confidence 88753 23222 334567778889999999999999999887443 322222 788
Q ss_pred cchHHHHHHHhCCeeeecccCccccCCCccccCcceEEEEe--------cCeEEEEecCCChhHHHHHHHHHHHHHhhhh
Q 010494 315 SHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT--------KDSTLIVTDGSTRAAVEKRISEIRSLAEITE 386 (509)
Q Consensus 315 ~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v~--------~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~ 386 (509)
...|+||+++|||.|+. +++.++...+|+|..+++. ...++||+||+.+.
T Consensus 475 ~s~leRIsR~tga~I~~-----siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~l----------------- 532 (1598)
T KOG0230|consen 475 RSLLERISRCTGADIVP-----SVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPL----------------- 532 (1598)
T ss_pred HHHHHHHHHHhcCceec-----chhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCCC-----------------
Confidence 89999999999999998 6888999999999999863 23567889987652
Q ss_pred HHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHH-hhCccccCchhHH
Q 010494 387 ERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAI-EEGIVVGGGCSLL 449 (509)
Q Consensus 387 ~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al-~~gvvpGGGa~e~ 449 (509)
=|||++||.+..+++++++-+.-++-++.+.. +.-++.--|+...
T Consensus 533 ------------------G~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi~ 578 (1598)
T KOG0230|consen 533 ------------------GCTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASIS 578 (1598)
T ss_pred ------------------CceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccc
Confidence 25899999999999999999999988888654 4457777776443
No 46
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00033 Score=76.26 Aligned_cols=90 Identities=20% Similarity=0.172 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCCC-eEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchH-HHHHHHhCCeeeecccCcccc
Q 010494 262 MFKILDSAVKEKYP-IVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYL-DDIAILTGGLVIRDEMGLTLD 339 (509)
Q Consensus 262 l~~~le~i~~~~~~-lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L-~~ia~~tG~~ii~~~~~~~~~ 339 (509)
+..+++.+.+.|.| +++++++|+|.++++|..+ .|++++ ++.++++ ++|+.+|||++++ .++
T Consensus 259 l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~------~Ilt~~-----~v~~~dl~~~l~~~~ga~~v~-----~~~ 322 (524)
T COG0459 259 LATLVVNILRGGANVVVVKAPGIDDLAKAYLEDI------AILTGR-----RVKKEDLGERLAKLGGAKIVS-----VLK 322 (524)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhh------cceecc-----eecchhhHHHHHHccCceEEe-----ecc
Confidence 34456677889999 8899999999999998776 467665 5667788 7999999999999 689
Q ss_pred CCCccccCc--ceEEEEe---cCeEEEEecCCC
Q 010494 340 KAGKEVLGT--AIKVVIT---KDSTLIVTDGST 367 (509)
Q Consensus 340 ~~~~~~lG~--~~~i~v~---~~~~~~~~g~~~ 367 (509)
+.++..+|. |+.++.. ++++++|.+|.+
T Consensus 323 d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~ 355 (524)
T COG0459 323 DLTTIVLGEGAAGLVEETKTGDYDMEKLQERKA 355 (524)
T ss_pred cCceeecCccccceEEEeeccchhhhhhhhhhh
Confidence 999999999 9999863 667777777653
No 47
>smart00574 POX domain associated with HOX domains.
Probab=66.09 E-value=31 Score=30.77 Aligned_cols=59 Identities=14% Similarity=0.148 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhc
Q 010494 389 FQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKE 460 (509)
Q Consensus 389 ~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~ 460 (509)
.++..++.+.++|- ..++|+.++++--..=++.++.+- .|+|+|++-.+.+-+|+..+.
T Consensus 70 ~~r~e~q~kk~kLl-------------~mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a~Sr 129 (140)
T smart00574 70 AERQELQRKKAKLL-------------SMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTISR 129 (140)
T ss_pred hHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 45555666665543 457888888888888888777764 789999999888888877663
No 48
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=52.93 E-value=35 Score=30.60 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhc
Q 010494 416 VELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKE 460 (509)
Q Consensus 416 ~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~ 460 (509)
..++|+.++++--..=++..+.+- .|.|.|++-.+.+-+|+..+.
T Consensus 84 ~mL~eVd~RY~qY~~Qmq~VvssFe~vaG~gaA~~YtalAlqamSr 129 (140)
T PF07526_consen 84 SMLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAAPYTALALQAMSR 129 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 457788888777777777777664 789999999998888887763
No 49
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=45.59 E-value=5.5 Score=43.76 Aligned_cols=62 Identities=29% Similarity=0.426 Sum_probs=50.8
Q ss_pred cCCCeEEEeccchH-----HHHHHHHHhcccccc----eeeeecCcccccCccchHHHHHHHhCCeeeeccc
Q 010494 272 EKYPIVIVAEDIEQ-----QALALLIRNKLRGVL----KAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEM 334 (509)
Q Consensus 272 ~~~~lvi~~~~i~~-----~al~~l~~n~~~~~~----~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~ 334 (509)
...++.+..+++++ +++..++.++.+++. ++++++.| +++...+.|++.+++++.++...++
T Consensus 246 ~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~-i~d~~~~~L~~~~I~~~~~v~~~dl 316 (522)
T TIGR02345 246 EKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLP-IGDLATQYFADHNIFCAGRVSDEDL 316 (522)
T ss_pred cccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCC-ccHHHHHHHHHCCcEEEecCCHHHH
Confidence 34477888889988 888888888877643 88999999 9999999999999999998877543
No 50
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=32.70 E-value=1.2e+02 Score=26.20 Aligned_cols=42 Identities=24% Similarity=0.435 Sum_probs=31.0
Q ss_pred EeecccCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHH
Q 010494 250 LLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIR 293 (509)
Q Consensus 250 ll~d~~i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~ 293 (509)
.++|+ ++++.....++.+.+.|+|+|+...+++++-+..+-.
T Consensus 70 VvIDf--T~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~ 111 (124)
T PF01113_consen 70 VVIDF--TNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEE 111 (124)
T ss_dssp EEEEE--S-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHH
T ss_pred EEEEc--CChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHH
Confidence 44555 3788888889999999999999999999877776644
No 51
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=32.00 E-value=2e+02 Score=23.44 Aligned_cols=54 Identities=17% Similarity=0.132 Sum_probs=32.7
Q ss_pred HHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCee
Q 010494 266 LDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLV 329 (509)
Q Consensus 266 le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~i 329 (509)
++.+.+-...+|++++|+++....-+..---+- +|-.+..| .+++|.++||-.+
T Consensus 22 ~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek--~Ip~v~V~--------s~~~LGkAcgi~V 75 (84)
T PRK13600 22 LKALKKDQVTSLIIAEDVEVYLMTRVLSQINQK--NIPVSFFK--------SKHALGKHVGINV 75 (84)
T ss_pred HHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHc--CCCEEEEC--------CHHHHHHHhCCCc
Confidence 455555667899999999988766443211111 22223222 4678888898763
No 52
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=25.79 E-value=48 Score=35.60 Aligned_cols=40 Identities=25% Similarity=0.279 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHhhCccccCchhHHHHHHHHHhHhcc
Q 010494 422 QLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKEL 461 (509)
Q Consensus 422 ~~~~~dAl~a~~~al~~gvvpGGGa~e~~ls~~L~~~~~~ 461 (509)
++.+.+|+.++|++.+-=+|.|||+-+-.+...|..+++.
T Consensus 216 ~~eL~~A~~lik~ak~PlIvaGGGv~YS~A~~~L~af~E~ 255 (617)
T COG3962 216 ERELADAAALIKSAKKPLIVAGGGVLYSGAREALRAFAET 255 (617)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCceeechHHHHHHHHHHh
Confidence 3667789999998854449999999999988889888764
No 53
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=24.15 E-value=1e+02 Score=31.30 Aligned_cols=43 Identities=19% Similarity=0.429 Sum_probs=36.5
Q ss_pred eeceeeEeecccCCCH-----HHHHHHHHHHH-hcCCCeEEEeccchHH
Q 010494 244 FHDGKLLLVDKKIKNP-----KDMFKILDSAV-KEKYPIVIVAEDIEQQ 286 (509)
Q Consensus 244 ~~~~kIll~d~~i~~~-----~~l~~~le~i~-~~~~~lvi~~~~i~~~ 286 (509)
+..|.+|+.|.++.+. .|++|++|.+. +.++|+|-+.-++++-
T Consensus 144 Lt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev 192 (352)
T COG4148 144 LTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEV 192 (352)
T ss_pred hcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHH
Confidence 6789999999988764 57999999987 5789999999888873
No 54
>PF07278 DUF1441: Protein of unknown function (DUF1441); InterPro: IPR009901 This entry is represented by Bacteriophage VT1-Sakai, H0025. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 160 residues in length. The function of this family is unknown.
Probab=24.06 E-value=1.6e+02 Score=26.81 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHH
Q 010494 470 GAEIFKRALSYPTKLIAKNAGVNGNFV 496 (509)
Q Consensus 470 ~~~~~~~AL~~~~~~L~~NaG~d~~~i 496 (509)
.++++.+.|+.+|-.|-++||+.|..+
T Consensus 102 ~~Kav~q~LetlPD~LERd~gL~p~~v 128 (152)
T PF07278_consen 102 MAKAVVQVLETLPDILERDAGLPPEQV 128 (152)
T ss_pred HHHHHHHHHHHhhHHHHhcCCCCHHHH
Confidence 478999999999999999999999765
No 55
>KOG3954 consensus Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=23.26 E-value=7.1e+02 Score=25.00 Aligned_cols=31 Identities=29% Similarity=0.358 Sum_probs=25.9
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHhhCcccc
Q 010494 413 QTVVELKDKQLRIEDALNATKAAIEEGIVVG 443 (509)
Q Consensus 413 ~t~~~l~E~~~~~~dAl~a~~~al~~gvvpG 443 (509)
.|-..+...-+-+.-|+.+.|+++..|+||-
T Consensus 232 enFkll~~LAdklgaavGAtRaaVDaGyvpN 262 (336)
T KOG3954|consen 232 ENFKLLYDLADKLGAAVGATRAAVDAGYVPN 262 (336)
T ss_pred ccceehHHHHHHhchhhchhhhhhccCcCCC
Confidence 3555777888889999999999999998874
No 56
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=22.72 E-value=1.8e+02 Score=25.48 Aligned_cols=38 Identities=26% Similarity=0.284 Sum_probs=27.5
Q ss_pred HHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcc
Q 010494 265 ILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPA 309 (509)
Q Consensus 265 ~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~ 309 (509)
+.+.+++.|+++||+. .+.+.+++.|-... |-+++.++
T Consensus 57 ~a~~l~~~gvdvvi~~-~iG~~a~~~l~~~G------Ikv~~~~~ 94 (121)
T COG1433 57 IAELLVDEGVDVVIAS-NIGPNAYNALKAAG------IKVYVAPG 94 (121)
T ss_pred HHHHHHHcCCCEEEEC-ccCHHHHHHHHHcC------cEEEecCC
Confidence 4678889999999655 78999998875543 34555554
No 57
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=21.29 E-value=3.5e+02 Score=23.43 Aligned_cols=67 Identities=9% Similarity=0.194 Sum_probs=43.7
Q ss_pred CHHHHHHHHHH-HHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcc----cccCccchHHHHHHHhCC
Q 010494 258 NPKDMFKILDS-AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPA----FGERKSHYLDDIAILTGG 327 (509)
Q Consensus 258 ~~~~l~~~le~-i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~----~~~~~~~~L~~ia~~tG~ 327 (509)
+.+++.+.+++ +.+.++-+|++.+.+.+..-+.+-..+ ..+.. .|-.|+ +...+...++++.+++|.
T Consensus 44 ~~eei~~~~~~~l~~~digIIlIte~~a~~i~~~I~~~~--~~~Pa-IieIP~k~~~y~~~~d~i~~~~~~~~~~ 115 (115)
T TIGR01101 44 TVSEIEDCFNRFLKRDDIAIILINQHIAEMIRHAVDAHT--RSIPA-VLEIPSKDHPYDASKDSILRRARGMFNP 115 (115)
T ss_pred CHHHHHHHHHHHhhcCCeEEEEEcHHHHHHhHHHHHhcC--CcCCE-EEEECCCCCCCCCcccHHHHHHHHHcCC
Confidence 45678888887 666778899999888877766654432 33322 234444 555566778888877763
Done!