BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010495
(509 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set
Domain- Containing Protein 2 Compound: Pr-Snf
pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human
Set Domain- Containing Protein 2 In Complex With
S-Adenosyl-L-Homocysteine
Length = 278
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 135/223 (60%), Gaps = 7/223 (3%)
Query: 24 YQHIYQNEFLSRKHKKQKEEDIAICVCRVDP------NNLESSCGERCLNVLTSTECTPG 77
+ I +N +L+ + K + DI C P E +CGE CLN L EC+
Sbjct: 40 FDLIEENVYLTERKKNKSHRDIKRMQCECTPLSKDERAQGEIACGEDCLNRLLMIECS-S 98
Query: 78 YCPCGVFCKNQRFQKCQYAKTKLVKTEGRGWGLLADENIKAGQFIIEYCGEVISWKEARR 137
CP G +C N+RFQ+ Q+A +++ TE +GWGL A +++ + F++EYCGEV+ KE +
Sbjct: 99 RCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKA 158
Query: 138 RSQAYETQGLKDAYIICLNALESIDATVKGSHARFINHSCQPNCETRKWNVLGEIRVGIF 197
R + Y Y + L E IDAT KG+ +RF+NHSC+PNCET+KW V G++RVG F
Sbjct: 159 RVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKWTVNGQLRVGFF 218
Query: 198 AKQDIPVGTELAYDYNFEWYGGTKVRCLCGAATCSGFLGAKSR 240
+ +P G+EL +DY F+ YG +C CG+A C G+LG ++R
Sbjct: 219 TTKLVPSGSELTFDYQFQRYGKEAQKCFCGSANCRGYLGGENR 261
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 178 bits (452), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 128/218 (58%), Gaps = 6/218 (2%)
Query: 22 PSYQHIYQNEFLSRKHKKQKE-EDIAICVCRVDPNNLESSCG--ERCLNVLTSTECTPGY 78
P Y+HI N + R + +I C C+ E+ CG C+N + EC P
Sbjct: 18 PPYKHIKVNRPIGRVQIFTADLSEIPRCNCKATD---ENPCGIDSECINRMLLYECHPTV 74
Query: 79 CPCGVFCKNQRFQKCQYAKTKLVKTEGRGWGLLADENIKAGQFIIEYCGEVISWKEARRR 138
CP G C+NQ F K QY + ++ +T RGWGL +IK G+F+ EY GE+I +E R R
Sbjct: 75 CPAGGRCQNQCFSKRQYPEVEIFRTLQRGWGLRTKTDIKKGEFVNEYVGELIDEEECRAR 134
Query: 139 SQAYETQGLKDAYIICLNALESIDATVKGSHARFINHSCQPNCETRKWNVLGEIRVGIFA 198
+ + + + Y++ L+ IDA KG++ARF+NH CQPNCET+KW+V G+ RVG+FA
Sbjct: 135 IRYAQEHDITNFYMLTLDKDRIIDAGPKGNYARFMNHCCQPNCETQKWSVNGDTRVGLFA 194
Query: 199 KQDIPVGTELAYDYNFEWYGGTKVRCLCGAATCSGFLG 236
DI GTEL ++YN E G K C CGA CSGFLG
Sbjct: 195 LSDIKAGTELTFNYNLECLGNGKTVCKCGAPNCSGFLG 232
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
Length = 222
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 127/220 (57%), Gaps = 5/220 (2%)
Query: 23 SYQHIYQNEFLSRKHKKQKEEDIAICVCRVDPNNLESSCGERCLNVLTSTECTPGYCPCG 82
SY+ I N ++ K E C C+ ++ C + CLN + EC+P CPCG
Sbjct: 2 SYKKIRSNVYVDVKPLSGYE--ATTCNCKKPDDDTRKGCVDDCLNRMIFAECSPNTCPCG 59
Query: 83 VFCKNQRFQKCQYAKT-KLVKTEGRGWGLLADENIKAGQFIIEYCGEVISWKEARRRSQA 141
C NQR Q+ ++ + + + E +GWG+ E +KAGQFIIEY GEV+S +E R R
Sbjct: 60 EQCCNQRIQRHEWVQCLERFRAEEKGWGIRTKEPLKAGQFIIEYLGEVVSEQEFRNR-MI 118
Query: 142 YETQGLKDAYIICLNALESIDATVKGSHARFINHSCQPNCETRKWNVLGEIRVGIFAKQD 201
+ D Y + L++ ID+ G+ ARFINHSC PNCE +KW+V G R+G++A +D
Sbjct: 119 EQYHNHSDHYCLNLDSGMVIDSYRMGNEARFINHSCDPNCEMQKWSVNGVYRIGLYALKD 178
Query: 202 IPVGTELAYDYNFEWYGGTKVR-CLCGAATCSGFLGAKSR 240
+P GTEL YDYNF + K + C CG C G +G KS+
Sbjct: 179 MPAGTELTYDYNFHSFNVEKQQLCKCGFEKCRGIIGGKSQ 218
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 78/130 (60%), Gaps = 2/130 (1%)
Query: 107 GWGLLADENIKAGQFIIEYCGEVISWKEARRRSQAYETQGLKDAYIICLNALESIDATVK 166
G GL NI AG+ +IEY G VI + +R + Y+++G+ Y+ ++ E +DAT+
Sbjct: 63 GRGLFCKRNIDAGEMVIEYAGNVIRSIQTDKREKYYDSKGI-GCYMFRIDDSEVVDATMH 121
Query: 167 GSHARFINHSCQPNCETRKWNVLGEIRVGIFAKQDIPVGTELAYDYNFEWYGGT-KVRCL 225
G+ ARFINHSC+PNC +R N+ G+ + IFA + I G EL YDY F + K+ C
Sbjct: 122 GNAARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFPIEDASNKLPCN 181
Query: 226 CGAATCSGFL 235
CGA C FL
Sbjct: 182 CGAKKCRKFL 191
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of
Variegation 3-9 Homolog 2
Length = 300
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 92/179 (51%), Gaps = 24/179 (13%)
Query: 79 CPCGVFCKNQRFQK-CQYAKTKLVKTEGRGWGLLADENIKAGQFIIEYCGEVISWKEARR 137
C CG C N+ QK QY+ + GRGWG+ IK F++EY GEVI+ +EA R
Sbjct: 123 CQCGPDCPNRIVQKGTQYSLCIFRTSNGRGWGVKTLVKIKRMSFVMEYVGEVITSEEAER 182
Query: 138 RSQAYETQGLKDAYIICLNALE-SIDATVKGSHARFINHSCQPNCETRKWNVLGE----- 191
R Q Y+ +G+ + + + E ++DA G+ + F+NHSC PN + +NV +
Sbjct: 183 RGQFYDNKGITYLFDLDYESDEFTVDAARYGNVSHFVNHSCDPNLQV--FNVFIDNLDTR 240
Query: 192 -IRVGIFAKQDIPVGTELAYDYNFEWYGGT------------KVR--CLCGAATCSGFL 235
R+ +F+ + I G EL +DY + G +VR C CGA TC G+L
Sbjct: 241 LPRIALFSTRTINAGEELTFDYQMKGSGDISSDSIDHSPAKKRVRTVCKCGAVTCRGYL 299
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 90/194 (46%), Gaps = 34/194 (17%)
Query: 73 ECTPGYCPCGVFCKNQRFQKCQYAKTKLVKTEGRGWGLLADENIKAGQFIIEYCGEVISW 132
EC G C C C N+ ++ + ++ +T+ RGWG+ NIK GQF+ Y GE+I+
Sbjct: 111 ECHQG-CACSKDCPNRVVERGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEIITS 169
Query: 133 KEARRRSQAYETQGLKDAYIICLNAL---ESIDATVKG-----------SHARFINHSCQ 178
+EA RR KD Y+ L+ +S+D + G RFINHSC
Sbjct: 170 EEADRRRAESTIARRKDVYLFALDKFSDPDSLDPLLAGQPLEVDGEYMSGPTRFINHSCD 229
Query: 179 PNCETRKWNVLGEIR------VGIFAKQDIPVGTELAYDYNFEWYG-----------GTK 221
PN + +G+ + +FA +DIP GTEL +DY G
Sbjct: 230 PNMAI--FARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEM 287
Query: 222 VRCLCGAATCSGFL 235
+CLCG A C G+L
Sbjct: 288 TKCLCGTAKCRGYL 301
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
Length = 290
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 89/180 (49%), Gaps = 26/180 (14%)
Query: 79 CPCGVFCKNQRFQKCQYAKTKLVKTEGRGWGLLADENIKAGQFIIEYCGEVISWKEARRR 138
C C C+N+ QK ++ KT +GWGL E I G+F+ EY GEV+ + E +RR
Sbjct: 109 CRCSDHCRNRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEVLGFSEVQRR 168
Query: 139 SQAYETQGLKDA-YIICL-------NALES-IDATVKGSHARFINHSCQPNCETRKWNVL 189
Q D+ YII + +E+ +D T G+ RF+NHSC+PN +
Sbjct: 169 ---IHLQTKSDSNYIIAIREHVYNGQVMETFVDPTYIGNIGRFLNHSCEPNLLMIPVRID 225
Query: 190 GEI-RVGIFAKQDIPVGTELAYDYNFEW-------------YGGTKVRCLCGAATCSGFL 235
+ ++ +FA +DI EL+YDY+ + +G + C CGA +C+ FL
Sbjct: 226 SMVPKLALFAAKDIVPEEELSYDYSGRYLNLTVSASKERLDHGKLRKPCYCGAKSCTAFL 285
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 112/252 (44%), Gaps = 33/252 (13%)
Query: 6 ELMPLFPSENLQCEEFPS-YQHIYQNEFLSRKHKKQKEEDIAICVCRVDPNNLESSCGE- 63
E +P+ + E PS Y+++ QN S + + + CVC D ++ CG+
Sbjct: 38 ERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDCSSSNCMCGQL 97
Query: 64 --RC-----------LNVLTST---ECTPGYCPCGVFCKNQRFQKCQYAKTKLVKTEGRG 107
RC N+ EC C C C+N+ Q A+ +L +T G
Sbjct: 98 SMRCWYDKDGRLLPEFNMAEPPLIFECNHA-CSCWRNCRNRVVQNGLRARLQLYRTRDMG 156
Query: 108 WGLLADENIKAGQFIIEYCGEVISWKEARRRSQAYETQGL--KDAYIICLNALESIDATV 165
WG+ + ++I G F+ EY GE+IS EA R + L KD + C IDA
Sbjct: 157 WGVRSLQDIPPGTFVCEYVGELISDSEADVREEDSYLFDLDNKDGEVYC------IDARF 210
Query: 166 KGSHARFINHSCQPN-CETRKWNVLGEI---RVGIFAKQDIPVGTELAYDYNFEWYG--G 219
G+ +RFINH C+PN R + ++ R+ F+ + I G +L +DY ++ G
Sbjct: 211 YGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKG 270
Query: 220 TKVRCLCGAATC 231
C CG+ C
Sbjct: 271 KLFSCRCGSPKC 282
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
Length = 287
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 112/252 (44%), Gaps = 33/252 (13%)
Query: 6 ELMPLFPSENLQCEEFPS-YQHIYQNEFLSRKHKKQKEEDIAICVCRVDPNNLESSCGE- 63
E +P+ + E PS Y+++ QN S + + + CVC D ++ CG+
Sbjct: 40 ERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDCSSSNCMCGQL 99
Query: 64 --RC-----------LNVLTST---ECTPGYCPCGVFCKNQRFQKCQYAKTKLVKTEGRG 107
RC N+ EC C C C+N+ Q A+ +L +T G
Sbjct: 100 SMRCWYDKDGRLLPEFNMAEPPLIFECNHA-CSCWRNCRNRVVQNGLRARLQLYRTRDMG 158
Query: 108 WGLLADENIKAGQFIIEYCGEVISWKEARRRSQAYETQGL--KDAYIICLNALESIDATV 165
WG+ + ++I G F+ EY GE+IS EA R + L KD + C IDA
Sbjct: 159 WGVRSLQDIPPGTFVCEYVGELISDSEADVREEDSYLFDLDNKDGEVYC------IDARF 212
Query: 166 KGSHARFINHSCQPN-CETRKWNVLGEI---RVGIFAKQDIPVGTELAYDYNFEWYG--G 219
G+ +RFINH C+PN R + ++ R+ F+ + I G +L +DY ++ G
Sbjct: 213 YGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKG 272
Query: 220 TKVRCLCGAATC 231
C CG+ C
Sbjct: 273 KLFSCRCGSPKC 284
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
Length = 299
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 84/181 (46%), Gaps = 25/181 (13%)
Query: 78 YCPCGVFCKNQRFQKCQYAKTKLVKTEGRGWGLLADENIKAGQFIIEYCGEVISWKEARR 137
+C C + C N+ Q+ + ++ KT+ +GWG+ + AG FI Y GEVI+ EA +
Sbjct: 119 FCSCSMECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAK 178
Query: 138 RSQAYETQGLKDAYIICLNALE-----SIDATVKGSHARFINHSCQPNC----ETRKWNV 188
R + Y+ G+ Y+ L+ + ++DA G +RF NHSC PN R
Sbjct: 179 RDKNYDDDGI--TYLFDLDMFDDASEYTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGF 236
Query: 189 LGEIRVGIFAKQDIPVGTELAYDY----NFEWYGGTKV----------RCLCGAATCSGF 234
+ FA +DI EL +DY +F K +C CG+A C G+
Sbjct: 237 RTIYDLAFFAIKDIQPLEELTFDYAGAKDFSPVQSQKSQQNRISKLRRQCKCGSANCRGW 296
Query: 235 L 235
L
Sbjct: 297 L 297
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
Length = 261
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 112/252 (44%), Gaps = 33/252 (13%)
Query: 6 ELMPLFPSENLQCEEFPS-YQHIYQNEFLSRKHKKQKEEDIAICVCRVDPNNLESSCGE- 63
E +P+ + E PS Y+++ QN S + + + CVC D ++ CG+
Sbjct: 14 ERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDCSSSNCMCGQL 73
Query: 64 --RC-----------LNVLTST---ECTPGYCPCGVFCKNQRFQKCQYAKTKLVKTEGRG 107
RC N+ EC C C C+N+ Q A+ +L +T G
Sbjct: 74 SMRCWYDKDGRLLPEFNMAEPPLIFECNHA-CSCWRNCRNRVVQNGLRARLQLYRTRDMG 132
Query: 108 WGLLADENIKAGQFIIEYCGEVISWKEARRRSQAYETQGL--KDAYIICLNALESIDATV 165
WG+ + ++I G F+ EY GE+IS EA R + L KD + C IDA
Sbjct: 133 WGVRSLQDIPPGTFVCEYVGELISDSEADVREEDSYLFDLDNKDGEVYC------IDARF 186
Query: 166 KGSHARFINHSCQPN-CETRKWNVLGEI---RVGIFAKQDIPVGTELAYDYNFEWYG--G 219
G+ +RFINH C+PN R + ++ R+ F+ + I G +L +DY ++ G
Sbjct: 187 YGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKG 246
Query: 220 TKVRCLCGAATC 231
C CG+ C
Sbjct: 247 KLFSCRCGSPKC 258
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 75/161 (46%), Gaps = 14/161 (8%)
Query: 79 CPCGVFCKNQRFQKCQYAKTKLVKTEGRGWGLLADENIKAGQFIIEYCGEVISWKEARRR 138
C C CKN+ Q + +L +T GWG+ A + I G FI EY GE+IS EA R
Sbjct: 109 CSCWRNCKNRVVQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADVR 168
Query: 139 SQAYETQGL--KDAYIICLNALESIDATVKGSHARFINHSCQPNCETRKWNVLGE----I 192
L KD + C IDA G+ +RFINH C PN + +L +
Sbjct: 169 EDDSYLFDLDNKDGEVYC------IDARYYGNISRFINHLCDPNIIPVRVFMLHQDLRFP 222
Query: 193 RVGIFAKQDIPVGTELAYDYNFEWYG--GTKVRCLCGAATC 231
R+ F+ +DI G EL +DY ++ C CG+ C
Sbjct: 223 RIAFFSSRDIRTGEELGFDYGDRFWDIKSKYFTCQCGSEKC 263
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 75/161 (46%), Gaps = 14/161 (8%)
Query: 79 CPCGVFCKNQRFQKCQYAKTKLVKTEGRGWGLLADENIKAGQFIIEYCGEVISWKEARRR 138
C C CKN+ Q + +L +T GWG+ A + I G FI EY GE+IS EA R
Sbjct: 111 CSCWRNCKNRVVQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADVR 170
Query: 139 SQAYETQGL--KDAYIICLNALESIDATVKGSHARFINHSCQPNCETRKWNVLGE----I 192
L KD + C IDA G+ +RFINH C PN + +L +
Sbjct: 171 EDDSYLFDLDNKDGEVYC------IDARYYGNISRFINHLCDPNIIPVRVFMLHQDLRFP 224
Query: 193 RVGIFAKQDIPVGTELAYDYNFEWYG--GTKVRCLCGAATC 231
R+ F+ +DI G EL +DY ++ C CG+ C
Sbjct: 225 RIAFFSSRDIRTGEELGFDYGDRFWDIKSKYFTCQCGSEKC 265
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
pdb|4I51|B Chain B, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
Length = 286
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 111/252 (44%), Gaps = 33/252 (13%)
Query: 6 ELMPLFPSENLQCEEFPS-YQHIYQNEFLSRKHKKQKEEDIAICVCRVDPNNLESSCGE- 63
E +P+ + E PS Y+++ QN S + + + CVC D ++ CG+
Sbjct: 39 ERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDCSSSNCMCGQL 98
Query: 64 --RC-----------LNVLTST---ECTPGYCPCGVFCKNQRFQKCQYAKTKLVKTEGRG 107
RC N+ EC C C C+N+ Q A+ +L +T G
Sbjct: 99 SMRCWYDKDGRLLPEFNMAEPPLIFECNHA-CSCWRNCRNRVVQNGLRARLQLYRTRDMG 157
Query: 108 WGLLADENIKAGQFIIEYCGEVISWKEARRRSQAYETQGL--KDAYIICLNALESIDATV 165
WG+ + ++I G F+ EY GE+IS EA R + L KD + C IDA
Sbjct: 158 WGVRSLQDIPPGTFVCEYVGELISDSEADVREEDSYLFDLDNKDGEVYC------IDARF 211
Query: 166 KGSHARFINHSCQPN-CETRKWNVLGEI---RVGIFAKQDIPVGTELAYDYNFEWYG--G 219
G+ +RFINH C+PN R + ++ R+ F+ + I G +L +D ++ G
Sbjct: 212 YGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDAGERFWDIKG 271
Query: 220 TKVRCLCGAATC 231
C CG+ C
Sbjct: 272 KLFSCRCGSPKC 283
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
pdb|2BQZ|E Chain E, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
Length = 161
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 99 KLVKTEGRGWGLLADENIKAGQFIIEYCGEVISWKEARRRSQAYE---TQGLKDAYIICL 155
K+ +G+G G++A + G F++EY G++I +A++R Y + G Y L
Sbjct: 28 KIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYL 87
Query: 156 NALESIDATVKGSH-ARFINHSCQPNCETRKWNVLGEIRVGIFAKQDIPVGTELAYDYN 213
+ +DAT + + R INHS NC+T+ ++ G + + A +DI G EL YDY
Sbjct: 88 SKTYCVDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDYG 146
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|B Chain B, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|C Chain C, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|D Chain D, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
Length = 167
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 99 KLVKTEGRGWGLLADENIKAGQFIIEYCGEVISWKEARRRSQAYE---TQGLKDAYIICL 155
K+ +G+G G++A + G F++EY G++I +A++R Y + G Y L
Sbjct: 34 KIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYL 93
Query: 156 NALESIDATVKGSH-ARFINHSCQPNCETRKWNVLGEIRVGIFAKQDIPVGTELAYDYN 213
+ +DAT + + R INHS NC+T+ ++ G + + A +DI G EL YDY
Sbjct: 94 SKTYCVDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDYG 152
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam
pdb|4IJ8|B Chain B, Crystal Structure Of The Complex Of Setd8 With Sam
Length = 165
Score = 63.2 bits (152), Expect = 3e-10, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
Query: 104 EGRGWGLLADENIKAGQFIIEYCGEVISWKEARRRSQAYE---TQGLKDAYIICLNALES 160
+G+G G++A + G F++EY G++I +A++R Y + G Y L+
Sbjct: 37 DGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYC 96
Query: 161 IDATVKGSH-ARFINHSCQPNCETRKWNVLGEIRVGIFAKQDIPVGTELAYDY 212
+DAT + + R INHS NC+T+ ++ G + + A +DI G EL YDY
Sbjct: 97 VDATRETNRLGRLINHSKSGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDY 149
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
Length = 166
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 99 KLVKTEGRGWGLLADENIKAGQFIIEYCGEVISWKEARRRSQAYE---TQGLKDAYIICL 155
K+ +G+G G++A + G F++E+ G++I +A++R Y + G Y L
Sbjct: 33 KIDLIDGKGRGVIATKQFSRGDFVVEFHGDLIEITDAKKREALYAQDPSTGCYMYYFQYL 92
Query: 156 NALESIDATVKGSH-ARFINHSCQPNCETRKWNVLGEIRVGIFAKQDIPVGTELAYDYN 213
+ +DAT + + R INHS NC+T+ ++ G + + A +DI G EL YDY
Sbjct: 93 SKTYCVDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDYG 151
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9X|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9Y|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
pdb|3F9Y|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
Length = 166
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 99 KLVKTEGRGWGLLADENIKAGQFIIEYCGEVISWKEARRRSQAYE---TQGLKDAYIICL 155
K+ +G+G G++A + G F++EY G++I +A++R Y + G Y L
Sbjct: 33 KIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYL 92
Query: 156 NALESIDATVKGSH-ARFINHSCQPNCETRKWNVLGEIRVGIFAKQDIPVGTELAYDYN 213
+ +DAT + + R INHS NC+T+ ++ G + + A +DI G EL +DY
Sbjct: 93 SKTYCVDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLFDYG 151
>pdb|3S8P|A Chain A, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
pdb|3S8P|B Chain B, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
Length = 273
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 170 ARFINHSCQPNCETRKWNVLGEIRVGIFAKQDIPVGTELAYDYNFEWYGGTKVRCLCGAA 229
A FINH C+PNC K+ G + A +DI G E++ Y ++G C C
Sbjct: 206 AAFINHDCRPNC---KFVSTGRDTACVKALRDIEPGEEISCYYGDGFFGENNEFCECYTC 262
Query: 230 TCSGFLGAKSR 240
G KSR
Sbjct: 263 ERRGTGAFKSR 273
>pdb|2Y7C|A Chain A, Atomic Model Of The Ocr-Bound Methylase Complex From The
Type I Restriction-Modification Enzyme Ecoki (M2s1).
Based On Fitting Into Em Map 1534.
pdb|2Y7H|A Chain A, Atomic Model Of The Dna-Bound Methylase Complex From The
Type I Restriction-Modification Enzyme Ecoki (M2s1).
Based On Fitting Into Em Map 1534
Length = 464
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 2 YSNQELMPLFPSENLQCEEFPSYQHIYQNEFLSRKHKKQKEEDIAICVCRVDPNNLESSC 61
Y + +PL + N+Q +F + ++ + L ++ +K EDI I + S
Sbjct: 35 YLKDDYLPLIRANNIQNGKFDTTDLVFVPKNLVKESQKISPEDIVIAM----------SS 84
Query: 62 GERCLNVLTSTECTPGYCPCGVFCKNQRFQKCQYA 96
G + + ++ + P C G FC R +K ++
Sbjct: 85 GSKSVVGKSAHQHLPFECSFGAFCGVLRPEKLIFS 119
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 149 DAYIICLNALESIDATVKGSHARFINHSCQPNCETRKWNVLGEIRVGIFAKQDIPVGTEL 208
+++ IC ++ + + S + +NHSC PNC V + + A +DI VG EL
Sbjct: 181 NSFTICNAEMQEVGVGLYPSIS-LLNHSCDPNCSI----VFNGPHLLLRAVRDIEVGEEL 235
Query: 209 AYDY 212
Y
Sbjct: 236 TICY 239
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 149 DAYIICLNALESIDATVKGSHARFINHSCQPNCETRKWNVLGEIRVGIFAKQDIPVGTEL 208
+++ IC ++ + + S + +NHSC PNC V + + A +DI VG EL
Sbjct: 181 NSFTICNAEMQEVGVGLYPSIS-LLNHSCDPNCSI----VFNGPHLLLRAVRDIEVGEEL 235
Query: 209 AYDY 212
Y
Sbjct: 236 TICY 239
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 149 DAYIICLNALESIDATVKGSHARFINHSCQPNCETRKWNVLGEIRVGIFAKQDIPVGTEL 208
+++ IC ++ + + S + +NHSC PNC V + + A +DI VG EL
Sbjct: 183 NSFTICNAEMQEVGVGLYPSIS-LLNHSCDPNCSI----VFNGPHLLLRAVRDIEVGEEL 237
Query: 209 AYDY 212
Y
Sbjct: 238 TICY 241
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 149 DAYIICLNALESIDATVKGSHARFINHSCQPNCETRKWNVLGEIRVGIFAKQDIPVGTEL 208
+++ IC ++ + + S + +NHSC PNC V + + A +DI VG EL
Sbjct: 182 NSFTICNAEMQEVGVGLYPSIS-LLNHSCDPNCSI----VFNGPHLLLRAVRDIEVGEEL 236
Query: 209 AYDY 212
Y
Sbjct: 237 TICY 240
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 149 DAYIICLNALESIDATVKGSHARFINHSCQPNCETRKWNVLGEIRVGIFAKQDIPVGTEL 208
+++ IC ++ + + S + +NHSC PNC V + + A +DI VG EL
Sbjct: 217 NSFTICNAEMQEVGVGLYPSIS-LLNHSCDPNCSI----VFNGPHLLLRAVRDIEVGEEL 271
Query: 209 AYDY 212
Y
Sbjct: 272 TICY 275
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 172 FINHSCQPNCETRKWNVLGEIRVGIFAKQDIPVGTELAYDY 212
+NHSC PNC V + + A +DI VG EL Y
Sbjct: 204 LLNHSCDPNCSI----VFNGPHLLLRAVRDIEVGEELTICY 240
>pdb|2GOP|A Chain A, The Beta-Propeller Domain Of The Trilobed Protease From
Pyrococcus Furiosus Reveals An Open Velcro Topology
pdb|2GOP|B Chain B, The Beta-Propeller Domain Of The Trilobed Protease From
Pyrococcus Furiosus Reveals An Open Velcro Topology
Length = 347
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 245 DTYLWEDDDERYSVEKIPLYDSAEDEPSLTLF-----KTVEATKTEYVVDGKEEYSMGM 298
D Y+WED E EK+ Y D + L+ K + Y+ DGKE MG+
Sbjct: 201 DIYIWEDGKEEKMFEKVSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYDGKE--VMGI 257
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,816,202
Number of Sequences: 62578
Number of extensions: 597904
Number of successful extensions: 1351
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1295
Number of HSP's gapped (non-prelim): 36
length of query: 509
length of database: 14,973,337
effective HSP length: 103
effective length of query: 406
effective length of database: 8,527,803
effective search space: 3462288018
effective search space used: 3462288018
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)