Query 010495
Match_columns 509
No_of_seqs 300 out of 1683
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 01:11:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010495.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010495hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4442 Clathrin coat binding 100.0 3E-71 6.6E-76 595.8 18.8 496 7-507 26-616 (729)
2 KOG1082 Histone H3 (Lys9) meth 100.0 5.9E-36 1.3E-40 311.8 13.8 235 3-240 67-358 (364)
3 KOG1080 Histone H3 (Lys4) meth 100.0 1E-32 2.3E-37 313.2 11.3 138 97-235 867-1004(1005)
4 KOG1079 Transcriptional repres 100.0 2.7E-32 5.9E-37 293.6 8.5 170 47-218 528-714 (739)
5 smart00317 SET SET (Su(var)3-9 99.9 6.4E-25 1.4E-29 187.4 13.8 115 98-212 2-116 (116)
6 KOG1141 Predicted histone meth 99.9 1.6E-26 3.5E-31 251.8 4.7 130 2-132 679-835 (1262)
7 KOG1083 Putative transcription 99.9 1.5E-24 3.2E-29 241.7 2.6 132 85-218 1166-1299(1306)
8 KOG1085 Predicted methyltransf 99.7 2.6E-18 5.7E-23 171.4 9.0 120 96-215 256-379 (392)
9 COG2940 Proteins containing SE 99.7 3.5E-18 7.5E-23 184.4 3.7 151 85-236 321-480 (480)
10 PF00856 SET: SET domain; Int 99.6 1.2E-15 2.7E-20 135.0 6.8 107 107-213 1-162 (162)
11 KOG1081 Transcription factor N 99.5 2.2E-14 4.7E-19 154.5 3.1 207 21-244 235-445 (463)
12 KOG2589 Histone tail methylase 99.3 1.8E-12 3.9E-17 133.5 8.1 183 105-294 136-320 (453)
13 smart00570 AWS associated with 98.8 1.7E-09 3.7E-14 83.5 2.3 50 44-95 2-51 (51)
14 PF05033 Pre-SET: Pre-SET moti 98.7 7.5E-09 1.6E-13 89.5 3.9 86 1-88 2-103 (103)
15 smart00468 PreSET N-terminal t 98.2 1.8E-06 4E-11 74.4 5.3 63 1-63 4-68 (98)
16 KOG2461 Transcription factor B 98.1 3.2E-06 6.9E-11 90.1 4.4 110 95-217 27-147 (396)
17 KOG1141 Predicted histone meth 96.6 0.0033 7.1E-08 71.5 6.4 233 2-235 881-1261(1262)
18 smart00508 PostSET Cysteine-ri 96.0 0.0033 7.2E-08 42.4 1.1 18 221-238 2-19 (26)
19 KOG1081 Transcription factor N 93.1 0.071 1.5E-06 58.5 3.2 222 17-240 29-268 (463)
20 KOG2084 Predicted histone tail 92.1 0.23 4.9E-06 52.7 5.5 53 172-228 208-271 (482)
21 KOG1337 N-methyltransferase [G 82.9 0.93 2E-05 49.6 3.0 41 171-214 238-278 (472)
22 PF08666 SAF: SAF domain; Int 42.6 15 0.00033 28.3 1.5 15 195-209 3-17 (63)
23 KOG1338 Uncharacterized conser 42.4 16 0.00035 39.7 2.1 41 169-215 218-261 (466)
24 KOG1079 Transcriptional repres 38.9 14 0.00031 42.4 1.1 28 61-89 512-539 (739)
25 PF00856 SET: SET domain; Int 36.4 20 0.00043 31.2 1.4 17 194-210 2-18 (162)
26 PF03638 TCR: Tesmin/TSO1-like 33.3 31 0.00067 26.0 1.8 37 45-89 3-40 (42)
27 smart00317 SET SET (Su(var)3-9 21.8 76 0.0016 26.3 2.5 21 192-213 10-30 (116)
No 1
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-71 Score=595.75 Aligned_cols=496 Identities=33% Similarity=0.449 Sum_probs=365.3
Q ss_pred ccCcccccCCCCCCCCCceeeccccccccccccCCCC-CCccccccCCCCC---CCCccccCccccccccccCCCCCC-C
Q 010495 7 LMPLFPSENLQCEEFPSYQHIYQNEFLSRKHKKQKEE-DIAICVCRVDPNN---LESSCGERCLNVLTSTECTPGYCP-C 81 (509)
Q Consensus 7 ~~pl~~~n~~~~~~pP~y~~I~~n~~~~~~~~~~~~~-~~~~C~C~~~c~~---~~~~C~~~C~n~~~~~EC~p~~C~-C 81 (509)
..++...+....+..|.|.++....|+...++...++ +.+.|+|.+...+ +.++||.+|.|+++++||+++.|+ |
T Consensus 26 r~~~~~~e~~~k~e~~~~f~~~~e~~y~~krk~~~ee~~~m~Cdc~~~~~d~~n~~~~cg~~CiNr~t~iECs~~~C~~c 105 (729)
T KOG4442|consen 26 RAQLFKKEQLLKEEALTKFENLDEKFYANKRKKKKEENDEMICDCKPKTGDGANGACACGEDCINRMTSIECSDRECPRC 105 (729)
T ss_pred cccccccchhhhcccchhhhhhhhhhhHHhhccCcccCcceeeecccccccccccccccCccccchhhhcccCCccCCCc
Confidence 3445555555556666655555555555544444444 8899999986555 789999999999999999998999 9
Q ss_pred CCCCCCccccccccceEEEEecCCCceeeeeccccCCCCEEEEeeceeeCHHHHHHHHHHHHhcCCCcceeeecCcceee
Q 010495 82 GVFCKNQRFQKCQYAKTKLVKTEGRGWGLLADENIKAGQFIIEYCGEVISWKEARRRSQAYETQGLKDAYIICLNALESI 161 (509)
Q Consensus 82 ~~~C~Nr~~Qk~~~~kleV~~s~~kG~GLfA~edI~kGefI~EY~GEVIt~~E~~~R~~~y~~~g~~~~Y~~~l~~~~~I 161 (509)
|.+|.|++||+.++++++||.|+++||||+|.++|++|+||+||+||||++.|+++|...|+.++..|+|+|.|..+.+|
T Consensus 106 g~~C~NQRFQkkqyA~vevF~Te~KG~GLRA~~dI~~g~FI~EY~GEVI~~~Ef~kR~~~Y~~d~~kh~Yfm~L~~~e~I 185 (729)
T KOG4442|consen 106 GVYCKNQRFQKKQYAKVEVFLTEKKGCGLRAEEDIPKGQFILEYIGEVIEEKEFEKRVKRYAKDGIKHYYFMALQGGEYI 185 (729)
T ss_pred cccccchhhhhhccCceeEEEecCcccceeeccccCCCcEEeeeccccccHHHHHHHHHHHHhcCCceEEEEEecCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccCcccccCCCCCCccceeeeeecCeeEEEEEEecCCCCCCeEEEeCCCCCCCCcceEEeeCCCCCccccCcccCC
Q 010495 162 DATVKGSHARFINHSCQPNCETRKWNVLGEIRVGIFAKQDIPVGTELAYDYNFEWYGGTKVRCLCGAATCSGFLGAKSRG 241 (509)
Q Consensus 162 DA~~~GN~aRFINHSC~PNc~~~~~~v~g~~rI~~fA~RDIkaGEELT~DYg~~~~~~~~~~ClCGa~~CRG~Lg~k~~~ 241 (509)
||+.+||++|||||||+|||.+++|.|+|..||||||.|.|++||||||||++++++...++|+||+++|||||||+++.
T Consensus 186 DAT~KGnlaRFiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf~rYGr~AQ~CyCgeanC~G~IGgk~q~ 265 (729)
T KOG4442|consen 186 DATKKGNLARFINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQFDRYGRDAQPCYCGEANCRGWIGGKPQT 265 (729)
T ss_pred cccccCcHHHhhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEecccccccccccccccCCcccccccCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999443
Q ss_pred -------------------cccccccccCCCccccccccc-ccC-----CccCccchhhhh------hhccccccccccC
Q 010495 242 -------------------FQEDTYLWEDDDERYSVEKIP-LYD-----SAEDEPSLTLFK------TVEATKTEYVVDG 290 (509)
Q Consensus 242 -------------------~~e~~~~~~d~~~r~~~e~ip-~~d-----~~~d~~~~~~~~------~~~~~~~~~~~~~ 290 (509)
..+++..|.++..++...+++ ++| +.+......... ++-...+++....
T Consensus 266 da~~~~prn~~~A~~~~~~~~e~~~~kl~~~~~~~~~~~e~~~d~~~~~s~sr~~~~~~~~~~~i~~l~l~~~~~~~~~~ 345 (729)
T KOG4442|consen 266 DASSLLPRNSAHALGKVIEDEEDTGKKLKKREGMSTLKAEGLSDRLLRLSLSRKMVRSPSLTTKISVLLLQTIAEDCVRS 345 (729)
T ss_pred cccccccchhhhhccccccchhhhhhccccccccccccccccchhhhhhhcccccccccccccceeeeehhhcchHHHHH
Confidence 112345566666666666555 322 222222111110 0000000000000
Q ss_pred cccc-ccccccCCCCC--CCCCCcce-eeccCCCcCccc-----cc---ccccccccccccccCCccch--hhhcccccc
Q 010495 291 KEEY-SMGMNVSVKPE--NHLDSTSL-VVQPLESVPMEG-----VV---VNAIKIEESEETKLYPQDTQ--QQVFSQNNA 356 (509)
Q Consensus 291 ~~e~-~~~~~~~~~~~--~~~~~~~~-~~~~~~~~pm~~-----~~---~~~~~~~~~~~~~~~~~~~~--q~~~~~~~~ 356 (509)
-.+. +.-...+.+.. ++...+.+ .+.-+.+||..- .+ ++...++.|++++..+- ++ |..+++...
T Consensus 346 ~l~~~~l~~~~d~~r~~~~~~l~~~~~~~l~sf~Ip~~~~l~~~k~~~~~qr~~~~~sq~~~~vp~-~~~~~~~ss~~~~ 424 (729)
T KOG4442|consen 346 FLDRHGLILVGDKGRAKIALRLYTALFLTLESFSIPTPIMLEESKVRPSRQRDATTKSQDLAPVPL-ATKNQRHSSPAEN 424 (729)
T ss_pred HHHhhccccccchhhHHHHHHHHHHHHHHHhhcCCCCcccccccccccchhhhccchhhhcccCCc-cCccccccchhhh
Confidence 0000 00000111110 11111111 222244555441 11 12222345555555553 22 445555545
Q ss_pred chhhcccCccccccccCCcCCCCCcccccCCCcccchhhhcccHHHHHHHH-------hhHHHHHHHhhhHHH-------
Q 010495 357 MISRIRSNSACRNYHIGPESMPKKRSQLKSNGKLKHLAQKHVDAKHVCQLL-------AFKEAQEEVLRNEEM------- 422 (509)
Q Consensus 357 ~~~~~~~~s~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~-------~~~~a~~~~~~~~~~------- 422 (509)
.+..+...-+ |+....-+.++++++-+|+.++..++.+.+..+-..| +-+.+++....+.--
T Consensus 425 ~~~~l~~~~p----~ik~~~~~~~~~~~k~~~~~~n~~~~~~~a~~~l~D~~~~r~~~g~~~~~dn~~~~~~n~~~~s~q 500 (729)
T KOG4442|consen 425 ASKTLENEKP----SIKEDITNARRKQLKFGGYNRNGSKKENVAARPLSDLRREREFNGWRSRLDNCRTDLVNHELNSRQ 500 (729)
T ss_pred hhhhcccCCC----ccccccchhhhcchhcccccccccccccccccchhhhhhhhcccccHHHHhhccccccchhccccc
Confidence 5555544444 6777778899999999999999999999998888887 778888876654322
Q ss_pred ----------------------------hhHHH--HHHHHHhhhhhhhhhhhhccccCchhhHHHHHHHHHhhhcccccc
Q 010495 423 ----------------------------KNEAS--SQLASLYNDIRPAIEEHERDSQDSVATSVAEKWIEACCTKLKTEF 472 (509)
Q Consensus 423 ----------------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (509)
+.++. +-++.+++++|||+|||.++.|+.|.+.||..|++..|.|||+|+
T Consensus 501 ~~~~~~~st~~s~~~q~~~nn~~~~~~~~~d~r~~s~~~~~sd~e~p~~ee~~~~~~~~~v~~~a~e~sv~q~~klk~e~ 580 (729)
T KOG4442|consen 501 HLPHRGRSTKPSSEYQSCSNNILPRGETREDARRRSKKSILSDLERPANEEARRSVQEEVVALVAAERSVYQKNKLKAEG 580 (729)
T ss_pred cCCccccccccCccccccccccccccCccchhhhccccCChhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhcchhhhhhh
Confidence 22333 337889999999999999999999999999999999999999999
Q ss_pred hhhHHHhhhcccCCCCCCCcc-cccccCCCCccccc
Q 010495 473 DLYSSIIKNVACTPTRKPNQA-KACDANSVTEVKYL 507 (509)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 507 (509)
||++.++.+++-+|.++.-+. +..+-.|++.++.|
T Consensus 581 ~~~~~~~d~~~~~k~~~~y~k~~~~e~~n~d~~p~~ 616 (729)
T KOG4442|consen 581 DLESVLADIIADHKGAPYYPKTQQAEKLNEDTLPPL 616 (729)
T ss_pred hhhhhhhhhhcCcccCcCCCcchhhhhhccccCCCc
Confidence 999999999999999876643 33344666666654
No 2
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=5.9e-36 Score=311.82 Aligned_cols=235 Identities=29% Similarity=0.429 Sum_probs=183.7
Q ss_pred CcccccCcccccCCCCCCCCCceeeccccccccccccCCCCCCccccccCCCCCCC---Ccccc--------Ccc-----
Q 010495 3 SNQELMPLFPSENLQCEEFPSYQHIYQNEFLSRKHKKQKEEDIAICVCRVDPNNLE---SSCGE--------RCL----- 66 (509)
Q Consensus 3 ~~~e~~pl~~~n~~~~~~pP~y~~I~~n~~~~~~~~~~~~~~~~~C~C~~~c~~~~---~~C~~--------~C~----- 66 (509)
..+|.+||+..|+++.+.++.|.||....+... ......+..+|.|...|.... |.|-. .|.
T Consensus 67 ~~~e~~~v~~~n~id~~~~~~f~y~~~~~~~~~--~~~~~~~~~~c~C~~~~~~~~~~~C~C~~~n~~~~~~~~~~~~~~ 144 (364)
T KOG1082|consen 67 LGSENLPVPLVNRIDEDAPLYFQYIATEIVDPG--ELSDCENSTGCRCCSSCSSVLPLTCLCERHNGGLVAYTCDGDCGT 144 (364)
T ss_pred CccccCceeeeeeccCCccccceeccccccCcc--ccccCccccCCCccCCCCCCCCccccChHhhCCccccccCCcccc
Confidence 467899999999998888888999999887664 233345677899986655422 34421 111
Q ss_pred ---ccccccccCCCCCCCCCCCCCccccccccceEEEEecCCCceeeeeccccCCCCEEEEeeceeeCHHHHHHHHHHHH
Q 010495 67 ---NVLTSTECTPGYCPCGVFCKNQRFQKCQYAKTKLVKTEGRGWGLLADENIKAGQFIIEYCGEVISWKEARRRSQAYE 143 (509)
Q Consensus 67 ---n~~~~~EC~p~~C~C~~~C~Nr~~Qk~~~~kleV~~s~~kG~GLfA~edI~kGefI~EY~GEVIt~~E~~~R~~~y~ 143 (509)
-....+||+ ..|+|+..|.||++|++...+++||+++.+||||++.+.|++|+||+||+||+++..+++.|...+.
T Consensus 145 ~~~~~~~i~EC~-~~C~C~~~C~nRv~q~g~~~~leIfrt~~kGwgvRs~~~I~~G~fvcEyaGe~~t~~e~~~~~~~~~ 223 (364)
T KOG1082|consen 145 LGKFKEPVFECS-VACGCHPDCANRVVQKGLQFHLEVFRTPEKGWGVRTLDPIPAGEFVCEYAGEVLTSEEAQRRTHLRE 223 (364)
T ss_pred ccccCccccccc-cCCCCCCcCcchhhccccccceEEEecCCceeeecccccccCCCeeEEEeeEecChHHhhhcccccc
Confidence 012368999 5899999999999999999999999999999999999999999999999999999999998754332
Q ss_pred hcCC--Ccce---------------------eeecCcceeeecccccCcccccCCCCCCccceeeeeecC----eeEEEE
Q 010495 144 TQGL--KDAY---------------------IICLNALESIDATVKGSHARFINHSCQPNCETRKWNVLG----EIRVGI 196 (509)
Q Consensus 144 ~~g~--~~~Y---------------------~~~l~~~~~IDA~~~GN~aRFINHSC~PNc~~~~~~v~g----~~rI~~ 196 (509)
.... ...+ .......+.|||...||++|||||||.||+.++.+..++ .++++|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ida~~~GNv~RfinHSC~PN~~~~~v~~~~~~~~~~~i~f 303 (364)
T KOG1082|consen 224 YLDDDCDAYSIADREWVDESPVGNTFVAPSLPGGPGRELLIDAKPHGNVARFINHSCSPNLLYQAVFQDEFVLLYLRIGF 303 (364)
T ss_pred ccccccccchhhhccccccccccccccccccccCCCcceEEchhhcccccccccCCCCccceeeeeeecCCccchheeee
Confidence 2211 0010 111234679999999999999999999999987766553 469999
Q ss_pred EEecCCCCCCeEEEeCCCCCC-----C------CcceEEeeCCCCCccccCcccC
Q 010495 197 FAKQDIPVGTELAYDYNFEWY-----G------GTKVRCLCGAATCSGFLGAKSR 240 (509)
Q Consensus 197 fA~RDIkaGEELT~DYg~~~~-----~------~~~~~ClCGa~~CRG~Lg~k~~ 240 (509)
||+++|.+|+||||||+..+. + .....|.||+.+||+.++....
T Consensus 304 fa~~~I~p~~ELT~dYg~~~~~~~~~~~~~~~~~~~~~c~c~~~~cr~~~~~~~~ 358 (364)
T KOG1082|consen 304 FALRDISPGEELTLDYGKAYKLLVQDGANIYTPVMKKNCNCGLEKCRGLLGSAPC 358 (364)
T ss_pred eeccccCCCcccchhhcccccccccccccccccccchhhcCCCHHhCcccCCCcc
Confidence 999999999999999997753 1 1356799999999999987544
No 3
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=99.98 E-value=1e-32 Score=313.22 Aligned_cols=138 Identities=46% Similarity=0.827 Sum_probs=132.4
Q ss_pred eEEEEecCCCceeeeeccccCCCCEEEEeeceeeCHHHHHHHHHHHHhcCCCcceeeecCcceeeecccccCcccccCCC
Q 010495 97 KTKLVKTEGRGWGLLADENIKAGQFIIEYCGEVISWKEARRRSQAYETQGLKDAYIICLNALESIDATVKGSHARFINHS 176 (509)
Q Consensus 97 kleV~~s~~kG~GLfA~edI~kGefI~EY~GEVIt~~E~~~R~~~y~~~g~~~~Y~~~l~~~~~IDA~~~GN~aRFINHS 176 (509)
.|...++..+||||||++.|.+|++|+||+||+|...-++.|...|...|..+.|+|.++...+|||+.+||+|||||||
T Consensus 867 ~~~F~~s~iH~wglfa~~~i~~~dmViEY~Ge~vR~~iad~RE~~Y~~~gi~~sYlfrid~~~ViDAtk~gniAr~InHs 946 (1005)
T KOG1080|consen 867 YVKFGRSGIHGWGLFAMENIAAGDMVIEYRGELVRSSIADLREARYERMGIGDSYLFRIDDEVVVDATKKGNIARFINHS 946 (1005)
T ss_pred hhccccccccccceeeccCccccceEEEeeceehhhhHHHHHHHHHhccCcccceeeecccceEEeccccCchhheeecc
Confidence 36677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccceeeeeecCeeEEEEEEecCCCCCCeEEEeCCCCCCCCcceEEeeCCCCCcccc
Q 010495 177 CQPNCETRKWNVLGEIRVGIFAKQDIPVGTELAYDYNFEWYGGTKVRCLCGAATCSGFL 235 (509)
Q Consensus 177 C~PNc~~~~~~v~g~~rI~~fA~RDIkaGEELT~DYg~~~~~~~~~~ClCGa~~CRG~L 235 (509)
|.|||..+.+.|+|..+|+|||.|+|.+||||||||.|..... +..|+|||++|||++
T Consensus 947 C~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYkF~~e~~-kipClCgap~Crg~~ 1004 (1005)
T KOG1080|consen 947 CNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYKFPTEDD-KIPCLCGAPNCRGFL 1004 (1005)
T ss_pred cCCCceeeEEEecCeeEEEEEEecccccCceeeeecccccccc-ccccccCCCcccccc
Confidence 9999999999999999999999999999999999999987654 889999999999997
No 4
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=99.97 E-value=2.7e-32 Score=293.61 Aligned_cols=170 Identities=38% Similarity=0.691 Sum_probs=152.2
Q ss_pred cccccCCCCCCCCccc-------cCccccccccccCCCCCCC-C---------CCCCCccccccccceEEEEecCCCcee
Q 010495 47 ICVCRVDPNNLESSCG-------ERCLNVLTSTECTPGYCPC-G---------VFCKNQRFQKCQYAKTKLVKTEGRGWG 109 (509)
Q Consensus 47 ~C~C~~~c~~~~~~C~-------~~C~n~~~~~EC~p~~C~C-~---------~~C~Nr~~Qk~~~~kleV~~s~~kG~G 109 (509)
.|.|.++|.....+|. ..|+|++...||+|..|.+ + ..|.|-.+|+++..++-+.++...|||
T Consensus 528 ~C~C~~dC~nrF~GC~Ck~QC~tkqCpC~~A~rECdPd~Cl~cg~~~~~d~~~~~C~N~~l~~~~qkr~llapSdVaGwG 607 (739)
T KOG1079|consen 528 FCYCSPDCRNRFPGCRCKAQCNTKQCPCYLAVRECDPDVCLMCGNVDHFDSSKISCKNTNLQRGEQKRVLLAPSDVAGWG 607 (739)
T ss_pred cccCCHHHHhcCCCCCcccccccCcCchhhhccccCchHHhccCcccccccCccccccchhhhhhhcceeechhhccccc
Confidence 4555555554333332 2689999999999999975 3 389999999999999999999999999
Q ss_pred eeeccccCCCCEEEEeeceeeCHHHHHHHHHHHHhcCCCcceeeecCcceeeecccccCcccccCCCCCCccceeeeeec
Q 010495 110 LLADENIKAGQFIIEYCGEVISWKEARRRSQAYETQGLKDAYIICLNALESIDATVKGSHARFINHSCQPNCETRKWNVL 189 (509)
Q Consensus 110 LfA~edI~kGefI~EY~GEVIt~~E~~~R~~~y~~~g~~~~Y~~~l~~~~~IDA~~~GN~aRFINHSC~PNc~~~~~~v~ 189 (509)
||+++.+.+++||.||+||+|+.+|+++|.+.|+.. .-+|+|.++.+++|||+++||.+||+|||-+|||...++.|.
T Consensus 608 lFlKe~v~KnefisEY~GE~IS~dEADrRGkiYDr~--~cSflFnln~dyviDs~rkGnk~rFANHS~nPNCYAkvm~V~ 685 (739)
T KOG1079|consen 608 LFLKESVSKNEFISEYTGEIISHDEADRRGKIYDRY--MCSFLFNLNNDYVIDSTRKGNKIRFANHSFNPNCYAKVMMVA 685 (739)
T ss_pred eeeccccCCCceeeeecceeccchhhhhcccccccc--cceeeeeccccceEeeeeecchhhhccCCCCCCcEEEEEEec
Confidence 999999999999999999999999999999999875 478999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEecCCCCCCeEEEeCCCCCCC
Q 010495 190 GEIRVGIFAKQDIPVGTELAYDYNFEWYG 218 (509)
Q Consensus 190 g~~rI~~fA~RDIkaGEELT~DYg~~~~~ 218 (509)
|.+||+|||.|+|.+||||||||+++...
T Consensus 686 GdhRIGifAkRaIeagEELffDYrYs~~~ 714 (739)
T KOG1079|consen 686 GDHRIGIFAKRAIEAGEELFFDYRYSPEH 714 (739)
T ss_pred CCcceeeeehhhcccCceeeeeeccCccc
Confidence 99999999999999999999999987543
No 5
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=99.92 E-value=6.4e-25 Score=187.38 Aligned_cols=115 Identities=48% Similarity=0.802 Sum_probs=103.3
Q ss_pred EEEEecCCCceeeeeccccCCCCEEEEeeceeeCHHHHHHHHHHHHhcCCCcceeeecCcceeeecccccCcccccCCCC
Q 010495 98 TKLVKTEGRGWGLLADENIKAGQFIIEYCGEVISWKEARRRSQAYETQGLKDAYIICLNALESIDATVKGSHARFINHSC 177 (509)
Q Consensus 98 leV~~s~~kG~GLfA~edI~kGefI~EY~GEVIt~~E~~~R~~~y~~~g~~~~Y~~~l~~~~~IDA~~~GN~aRFINHSC 177 (509)
++++.++++|+||||+++|++|++|++|.|.++...+...+...+...+....|++......+||+...||++|||||||
T Consensus 2 ~~~~~~~~~G~gl~a~~~i~~g~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~iNHsc 81 (116)
T smart00317 2 LEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERSKAYDTDGADSFYLFEIDSDLCIDARRKGNIARFINHSC 81 (116)
T ss_pred cEEEecCCCcEEEEECCccCCCCEEEEEEeEEECHHHHHHHHHHHHhcCCCCEEEEECCCCEEEeCCccCcHHHeeCCCC
Confidence 56778889999999999999999999999999999888887665665554457888887789999999999999999999
Q ss_pred CCccceeeeeecCeeEEEEEEecCCCCCCeEEEeC
Q 010495 178 QPNCETRKWNVLGEIRVGIFAKQDIPVGTELAYDY 212 (509)
Q Consensus 178 ~PNc~~~~~~v~g~~rI~~fA~RDIkaGEELT~DY 212 (509)
.|||.+..+...+..++.|+|+|||++|||||+||
T Consensus 82 ~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 82 EPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred CCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 99999988888777789999999999999999999
No 6
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=99.92 E-value=1.6e-26 Score=251.83 Aligned_cols=130 Identities=18% Similarity=0.329 Sum_probs=105.7
Q ss_pred CCcccccCcccccCCCCCCCCCceeeccccccccccccCCCCCCccccccCCCCCC-CCcccc------Ccc-c------
Q 010495 2 YSNQELMPLFPSENLQCEEFPSYQHIYQNEFLSRKHKKQKEEDIAICVCRVDPNNL-ESSCGE------RCL-N------ 67 (509)
Q Consensus 2 ~~~~e~~pl~~~n~~~~~~pP~y~~I~~n~~~~~~~~~~~~~~~~~C~C~~~c~~~-~~~C~~------~C~-n------ 67 (509)
..++|.+||...|.++.-+||.+.|-++.+....+......+...+|.|+.+|-+. .|+|.+ .|. +
T Consensus 679 ~~g~e~vpis~~neids~~lpq~ay~K~~ip~~~nl~n~~~~fl~scdc~~gcid~~kcachQltvk~~~t~p~~~v~~t 758 (1262)
T KOG1141|consen 679 PCGREHVPISEKNEIDSHRLPQAAYKKHMIPTNNNLSNRRKDFLQSCDCPTGCIDSMKCACHQLTVKKKTTGPNQNVAST 758 (1262)
T ss_pred cCCccccccceeecccCcCCccchhheeeccCCCcccccChhhhhcCCCCcchhhhhhhhHHHHHHHhhccCCCcccccC
Confidence 35799999999999999999999998877665554445556778899999998873 355643 121 1
Q ss_pred -----------c-ccccccCCCCCCCC-CCCCCccccccccceEEEEecCCCceeeeeccccCCCCEEEEeeceeeCH
Q 010495 68 -----------V-LTSTECTPGYCPCG-VFCKNQRFQKCQYAKTKLVKTEGRGWGLLADENIKAGQFIIEYCGEVISW 132 (509)
Q Consensus 68 -----------~-~~~~EC~p~~C~C~-~~C~Nr~~Qk~~~~kleV~~s~~kG~GLfA~edI~kGefI~EY~GEVIt~ 132 (509)
+ ...+||. ..|.|. ..|.||++|++..+++.+|++..+|||++...+|.+|.||+.|.|.+++.
T Consensus 759 ~gykyKRl~e~~ptg~yEc~-k~ckc~~~~C~nrmvqhg~qvRlq~fkt~~kGWg~rclddi~~g~fVciy~g~~l~~ 835 (1262)
T KOG1141|consen 759 NGYKYKRLIEIRPTGPYECL-KACKCCGPDCLNRMVQHGYQVRLQRFKTIHKGWGRRCLDDITGGNFVCIYPGGALLH 835 (1262)
T ss_pred cchhhHHHHHhcCCCHHHHH-HhhccCcHHHHHHHhhcCceeEeeeccccccccceEeeeecCCceEEEEecchhhhh
Confidence 0 1148999 689875 68999999999999999999999999999999999999999999998653
No 7
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=99.89 E-value=1.5e-24 Score=241.65 Aligned_cols=132 Identities=47% Similarity=0.855 Sum_probs=118.1
Q ss_pred CCCccccccc-cceEEEEecCCCceeeeeccccCCCCEEEEeeceeeCHHHHHHHH-HHHHhcCCCcceeeecCcceeee
Q 010495 85 CKNQRFQKCQ-YAKTKLVKTEGRGWGLLADENIKAGQFIIEYCGEVISWKEARRRS-QAYETQGLKDAYIICLNALESID 162 (509)
Q Consensus 85 C~Nr~~Qk~~-~~kleV~~s~~kG~GLfA~edI~kGefI~EY~GEVIt~~E~~~R~-~~y~~~g~~~~Y~~~l~~~~~ID 162 (509)
|.|+.+|+.. ..+|.+|..+..||||.|.++|++|+||+||+|+|++..+.+.++ ..|. ...+.|...+..+.+||
T Consensus 1166 c~nqrm~r~e~cp~L~v~~gp~~G~~v~tk~PikagtfI~EYvGeVit~ke~e~~mmtl~~--~d~~~~cL~I~p~l~id 1243 (1306)
T KOG1083|consen 1166 CSNQRMQRHEECPPLEVFRGPKKGWGVRTKEPIKAGTFIMEYVGEVITEKEFEPRMMTLYH--NDDDHYCLVIDPGLFID 1243 (1306)
T ss_pred hhhHHhhhhccCCCcceeccCCCCccccccccccccchHHHHHHHHHHHHhhcccccccCC--CCCcccccccCccccCC
Confidence 7888888644 478999999999999999999999999999999999998888772 2332 23578999999999999
Q ss_pred cccccCcccccCCCCCCccceeeeeecCeeEEEEEEecCCCCCCeEEEeCCCCCCC
Q 010495 163 ATVKGSHARFINHSCQPNCETRKWNVLGEIRVGIFAKQDIPVGTELAYDYNFEWYG 218 (509)
Q Consensus 163 A~~~GN~aRFINHSC~PNc~~~~~~v~g~~rI~~fA~RDIkaGEELT~DYg~~~~~ 218 (509)
+.++||.+||+||||+|||..++|.++|..|+++||+|||.+||||||||++..+.
T Consensus 1244 ~~R~~n~~RfinhscKPNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~ks~~ 1299 (1306)
T KOG1083|consen 1244 IPRMGNGARFINHSCKPNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYNFKSFN 1299 (1306)
T ss_pred hhhccccccccccccCCCCccccccccceeeeeeeecCCCCCCceEEEeccccccC
Confidence 99999999999999999999999999999999999999999999999999976543
No 8
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=99.75 E-value=2.6e-18 Score=171.41 Aligned_cols=120 Identities=32% Similarity=0.470 Sum_probs=104.0
Q ss_pred ceEEEEecCCCceeeeeccccCCCCEEEEeeceeeCHHHHHHHHHHHHhcCCCcceeee---cCcceeeecccc-cCccc
Q 010495 96 AKTKLVKTEGRGWGLLADENIKAGQFIIEYCGEVISWKEARRRSQAYETQGLKDAYIIC---LNALESIDATVK-GSHAR 171 (509)
Q Consensus 96 ~kleV~~s~~kG~GLfA~edI~kGefI~EY~GEVIt~~E~~~R~~~y~~~g~~~~Y~~~---l~~~~~IDA~~~-GN~aR 171 (509)
..+.+..-.++|.||+|+..+.+|+||.||.|.+|...++..|...|..+.....|+|. .+..++|||+.- +-++|
T Consensus 256 egl~~~~~dgKGRGv~a~~~F~rgdFVVEY~Gdliei~eAk~rE~~Ya~De~~GcYMYyF~h~sk~yCiDAT~et~~lGR 335 (392)
T KOG1085|consen 256 EGLLEVYKDGKGRGVRAKVNFERGDFVVEYRGDLIEISEAKVREEQYANDEEIGCYMYYFEHNSKKYCIDATKETPWLGR 335 (392)
T ss_pred cceeEEeeccccceeEeecccccCceEEEEecceeeechHHHHHHHhccCcccceEEEeeeccCeeeeeecccccccchh
Confidence 34555556679999999999999999999999999999999999999876544444433 355689999985 56799
Q ss_pred ccCCCCCCccceeeeeecCeeEEEEEEecCCCCCCeEEEeCCCC
Q 010495 172 FINHSCQPNCETRKWNVLGEIRVGIFAKQDIPVGTELAYDYNFE 215 (509)
Q Consensus 172 FINHSC~PNc~~~~~~v~g~~rI~~fA~RDIkaGEELT~DYg~~ 215 (509)
.||||-.+||.+..+.++|.+++.++|.|||.+||||+||||+-
T Consensus 336 LINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDR 379 (392)
T KOG1085|consen 336 LINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDR 379 (392)
T ss_pred hhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhcccc
Confidence 99999999999999999999999999999999999999999964
No 9
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=99.71 E-value=3.5e-18 Score=184.38 Aligned_cols=151 Identities=38% Similarity=0.608 Sum_probs=121.8
Q ss_pred CCCccccccccceEEEEecCCCceeeeeccccCCCCEEEEeeceeeCHHHHHHHHHHHHhcCCCcceeeecCc-ceeeec
Q 010495 85 CKNQRFQKCQYAKTKLVKTEGRGWGLLADENIKAGQFIIEYCGEVISWKEARRRSQAYETQGLKDAYIICLNA-LESIDA 163 (509)
Q Consensus 85 C~Nr~~Qk~~~~kleV~~s~~kG~GLfA~edI~kGefI~EY~GEVIt~~E~~~R~~~y~~~g~~~~Y~~~l~~-~~~IDA 163 (509)
+.|............+..+...|||+||.+.|++|++|.+|.|+++...++..+...+...+. ...++.+.. ..++|+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~g~fa~~~i~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~ 399 (480)
T COG2940 321 LLNSNGCKKRREPNVVQESEIKGYGVFALESIKKGEFIIEYHGEIIRRKEAREREENYDLLGN-EFSFGLLEDKDKVRDS 399 (480)
T ss_pred hhhhcccccccchhhhhhhcccccceeehhhccchHHHHHhcCcccchHHHHhhhcccccccc-ccchhhccccchhhhh
Confidence 334333344445556677889999999999999999999999999999998888877643332 222223332 779999
Q ss_pred ccccCcccccCCCCCCccceeeeeecCeeEEEEEEecCCCCCCeEEEeCCCCCCCCc--------ceEEeeCCCCCcccc
Q 010495 164 TVKGSHARFINHSCQPNCETRKWNVLGEIRVGIFAKQDIPVGTELAYDYNFEWYGGT--------KVRCLCGAATCSGFL 235 (509)
Q Consensus 164 ~~~GN~aRFINHSC~PNc~~~~~~v~g~~rI~~fA~RDIkaGEELT~DYg~~~~~~~--------~~~ClCGa~~CRG~L 235 (509)
...|+.+||+||||.|||......+.|..++.++|+|||.+||||++||+..++... ...|.||+..|++++
T Consensus 400 ~~~g~~~r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (480)
T COG2940 400 QKAGDVARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPSLEDNRELKKLLEKRWGCACGEDRCSHTM 479 (480)
T ss_pred hhcccccceeecCCCCCcceecccccccceeeecccccchhhhhhccccccccccchhhhhhhhhhhccccCCCccCCCC
Confidence 999999999999999999998877777779999999999999999999998877633 468999999999987
Q ss_pred C
Q 010495 236 G 236 (509)
Q Consensus 236 g 236 (509)
.
T Consensus 480 ~ 480 (480)
T COG2940 480 S 480 (480)
T ss_pred C
Confidence 3
No 10
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.60 E-value=1.2e-15 Score=134.98 Aligned_cols=107 Identities=25% Similarity=0.317 Sum_probs=72.9
Q ss_pred ceeeeeccccCCCCEEEEeeceeeCHHHHHHH-------------------H-----------------HHHHhc----C
Q 010495 107 GWGLLADENIKAGQFIIEYCGEVISWKEARRR-------------------S-----------------QAYETQ----G 146 (509)
Q Consensus 107 G~GLfA~edI~kGefI~EY~GEVIt~~E~~~R-------------------~-----------------~~y~~~----g 146 (509)
|+||||+++|++|++|++..+.+++....... . ...... .
T Consensus 1 GrGl~At~dI~~Ge~I~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF00856_consen 1 GRGLFATRDIKAGEVILIPRPAILTPDEVSPQPELLRLQLSKALEEQSRSDFSIQKKQKAEKSERSPQLESLHSISLRSE 80 (162)
T ss_dssp SEEEEESS-B-TTEEEEEESEEEEEHHHHHCHHHHSHHTTCSSSCSHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCHTTT
T ss_pred CEEEEECccCCCCCEEEEECcceEEehhhhhcccchhhhhhhhhcccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999887665431 0 000000 0
Q ss_pred C---------------CcceeeecCcceeeecccccCcccccCCCCCCccceeeeeecCeeEEEEEEecCCCCCCeEEEe
Q 010495 147 L---------------KDAYIICLNALESIDATVKGSHARFINHSCQPNCETRKWNVLGEIRVGIFAKQDIPVGTELAYD 211 (509)
Q Consensus 147 ~---------------~~~Y~~~l~~~~~IDA~~~GN~aRFINHSC~PNc~~~~~~v~g~~rI~~fA~RDIkaGEELT~D 211 (509)
. ..............++.....++.|+||||.|||.+......+...+.|+|.|||++|||||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~is 160 (162)
T PF00856_consen 81 LQFSQAFQWSWFISWTRSDFSSRSFSEDDRDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFIS 160 (162)
T ss_dssp CCTCCHHHHHHHHHHHHHEEEEEEETTEEEEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEE
T ss_pred ccccccccchhhccccceeeeccccccccccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEE
Confidence 0 0000111112234566677889999999999999987765566779999999999999999999
Q ss_pred CC
Q 010495 212 YN 213 (509)
Q Consensus 212 Yg 213 (509)
||
T Consensus 161 YG 162 (162)
T PF00856_consen 161 YG 162 (162)
T ss_dssp ST
T ss_pred EC
Confidence 97
No 11
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=99.46 E-value=2.2e-14 Score=154.46 Aligned_cols=207 Identities=32% Similarity=0.545 Sum_probs=151.6
Q ss_pred CCCceeeccccccccccccC-CCCCCccccccCCCCCC-CCccccCccc--cccccccCCCCCCCCCCCCCccccccccc
Q 010495 21 FPSYQHIYQNEFLSRKHKKQ-KEEDIAICVCRVDPNNL-ESSCGERCLN--VLTSTECTPGYCPCGVFCKNQRFQKCQYA 96 (509)
Q Consensus 21 pP~y~~I~~n~~~~~~~~~~-~~~~~~~C~C~~~c~~~-~~~C~~~C~n--~~~~~EC~p~~C~C~~~C~Nr~~Qk~~~~ 96 (509)
++.+..+..+.+........ .......+.|...-..+ ..++...+.+ +...++|.|..|.+...|.|+.+.+..+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sk~~~~ 314 (463)
T KOG1081|consen 235 PEEYKRIKVVCPIGDQQIYSAAVSCIKKLLAKPTDEKPNSRGASEEATKSEKMLAYEVHPKVCSAEERCHNQQFSKESYP 314 (463)
T ss_pred cccccccccccCcCcccccchhhhhhhhccccccccccccCCcHHHhhhhHHhhhhhhcccccccccccccchhhhhccc
Confidence 44556666565554433111 11223345555432221 1223333433 55567888889999999999998765543
Q ss_pred eEEEEecCCCceeeeeccccCCCCEEEEeeceeeCHHHHHHHHHHHHhcCCCcceeeecCcceeeecccccCcccccCCC
Q 010495 97 KTKLVKTEGRGWGLLADENIKAGQFIIEYCGEVISWKEARRRSQAYETQGLKDAYIICLNALESIDATVKGSHARFINHS 176 (509)
Q Consensus 97 kleV~~s~~kG~GLfA~edI~kGefI~EY~GEVIt~~E~~~R~~~y~~~g~~~~Y~~~l~~~~~IDA~~~GN~aRFINHS 176 (509)
. + .+ +|..+|.+| +|++++..+...|...-......+.|...+..+..||+..+||.+||+|||
T Consensus 315 e------~-~~---~~~~~~~k~------vg~~i~~~e~~~~~~~~~~~~~~~~~~~~~e~~~~id~~~~~n~sr~~nh~ 378 (463)
T KOG1081|consen 315 E------P-QK---TAKADIRKG------VGEVIDDKECKARLQRVKESDLVDFYMVFIQKDRIIDAGPKGNYSRFLNHS 378 (463)
T ss_pred c------c-ch---hhHHhhhcc------cCcccchhhheeehhhhhccchhhhhhhhhhcccccccccccchhhhhccc
Confidence 3 2 22 889999999 999999999888877666655666665555555599999999999999999
Q ss_pred CCCccceeeeeecCeeEEEEEEecCCCCCCeEEEeCCCCCCCCcceEEeeCCCCCccccCcccCCccc
Q 010495 177 CQPNCETRKWNVLGEIRVGIFAKQDIPVGTELAYDYNFEWYGGTKVRCLCGAATCSGFLGAKSRGFQE 244 (509)
Q Consensus 177 C~PNc~~~~~~v~g~~rI~~fA~RDIkaGEELT~DYg~~~~~~~~~~ClCGa~~CRG~Lg~k~~~~~e 244 (509)
|.||+...+|.+.+..+++++|.+.|++|+||||+|+..-.+ ..+.|.||+.+|.++++.+.+....
T Consensus 379 ~~~~v~~~k~~~~~~t~~~~~a~~~i~~g~e~t~~~n~~~~~-~~~~~~~~~e~~~~~~~k~~~~~~~ 445 (463)
T KOG1081|consen 379 CQPNVETEKWQVIGDTRVGLFAPRQIEAGEELTFNYNGNCEG-NEKRCCCGSENCTETKGKKKKKKKQ 445 (463)
T ss_pred CCCceeechhheecccccccccccccccchhhhheeeccccC-CcceEeecccccccCCcccccchhh
Confidence 999999999999999999999999999999999999976544 3578999999999999987765443
No 12
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=99.34 E-value=1.8e-12 Score=133.52 Aligned_cols=183 Identities=19% Similarity=0.190 Sum_probs=119.8
Q ss_pred CCceeeeeccccCCCCEEEEeeceeeCHHHHHHHHHHHHhcCCCcceeeecCcceeeecccccCcccccCCCCCCcccee
Q 010495 105 GRGWGLLADENIKAGQFIIEYCGEVISWKEARRRSQAYETQGLKDAYIICLNALESIDATVKGSHARFINHSCQPNCETR 184 (509)
Q Consensus 105 ~kG~GLfA~edI~kGefI~EY~GEVIt~~E~~~R~~~y~~~g~~~~Y~~~l~~~~~IDA~~~GN~aRFINHSC~PNc~~~ 184 (509)
..|--|.+++.+.+|+-|-..+|-|+.-.+.+++... ..+..++-+|...... -+...-..|+||||.|.|||.|.
T Consensus 136 ~~gAkivst~~w~~ndkIe~LvGcIaeLse~eE~~ll--~~g~nDFSvmyStRk~--caqLwLGPaafINHDCrpnCkFv 211 (453)
T KOG2589|consen 136 QNGAKIVSTKSWSRNDKIELLVGCIAELSEAEERSLL--RGGGNDFSVMYSTRKR--CAQLWLGPAAFINHDCRPNCKFV 211 (453)
T ss_pred CCCceEEeeccccCCccHHHhhhhhhhcChhhhHHHH--hccCCceeeeeecccc--hhhheeccHHhhcCCCCCCceee
Confidence 5788899999999999999999999876666666432 2233333332221111 12233357899999999999875
Q ss_pred eeeecCeeEEEEEEecCCCCCCeEEEeCCCCCCCCcceEEeeCCCCCccccCcccCC--cccccccccCCCccccccccc
Q 010495 185 KWNVLGEIRVGIFAKQDIPVGTELAYDYNFEWYGGTKVRCLCGAATCSGFLGAKSRG--FQEDTYLWEDDDERYSVEKIP 262 (509)
Q Consensus 185 ~~~v~g~~rI~~fA~RDIkaGEELT~DYg~~~~~~~~~~ClCGa~~CRG~Lg~k~~~--~~e~~~~~~d~~~r~~~e~ip 262 (509)
..|..++.+.++|||+||||||.-||.+||+.....|.|-+..=+|.-+-+... ..-.....++...|.+...+.
T Consensus 212 ---s~g~~tacvkvlRDIePGeEITcFYgs~fFG~~N~~CeC~TCER~g~gaFk~~~g~~s~~p~~s~ky~lret~~r~n 288 (453)
T KOG2589|consen 212 ---STGRDTACVKVLRDIEPGEEITCFYGSGFFGENNEECECVTCERRGTGAFKKLAGLPSCSPKISSKYSLRETDPRSN 288 (453)
T ss_pred ---cCCCceeeeehhhcCCCCceeEEeecccccCCCCceeEEeecccccccchhhccCCCCCCCcccccchhhhhhhhhh
Confidence 467789999999999999999999999999999999999876656654433321 111234455556666666665
Q ss_pred ccCCccCccchhhhhhhccccccccccCcccc
Q 010495 263 LYDSAEDEPSLTLFKTVEATKTEYVVDGKEEY 294 (509)
Q Consensus 263 ~~d~~~d~~~~~~~~~~~~~~~~~~~~~~~e~ 294 (509)
.+.+.+++.+..-....+.+.++......++.
T Consensus 289 r~~~s~~~~~~l~~~s~~~~~~~~~~s~~~~~ 320 (453)
T KOG2589|consen 289 RYKISGEDSSNLNSWSSSGELDDASSSELDEE 320 (453)
T ss_pred hheecccccccCCccccCCCCCCCCchhhccc
Confidence 55555554333333333334444444444443
No 13
>smart00570 AWS associated with SET domains. subdomain of PRESET
Probab=98.82 E-value=1.7e-09 Score=83.54 Aligned_cols=50 Identities=50% Similarity=1.144 Sum_probs=43.6
Q ss_pred CCccccccCCCCCCCCccccCccccccccccCCCCCCCCCCCCCcccccccc
Q 010495 44 DIAICVCRVDPNNLESSCGERCLNVLTSTECTPGYCPCGVFCKNQRFQKCQY 95 (509)
Q Consensus 44 ~~~~C~C~~~c~~~~~~C~~~C~n~~~~~EC~p~~C~C~~~C~Nr~~Qk~~~ 95 (509)
+.+.|+|++...+ ..+|+.+|+||++.+||+ +.|+|+..|+||+||+.++
T Consensus 2 e~~~C~C~~~~~~-~~~CgsdClNR~l~~EC~-~~C~~G~~C~NqrFqk~~y 51 (51)
T smart00570 2 DIMTCECKPTDDD-EGACGSDCLNRMLLIECS-SDCPCGSYCSNQRFQKRQY 51 (51)
T ss_pred CCceeeCccCCCC-CCCcchHHHHHHHhhhcC-CCCCCCcCccCcccccCcC
Confidence 4679999976544 678999999999999995 8999999999999999754
No 14
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=98.74 E-value=7.5e-09 Score=89.49 Aligned_cols=86 Identities=21% Similarity=0.349 Sum_probs=52.0
Q ss_pred CCCcccccCcccccCCCCCCC-CCceeeccccccccccccCCCCCCccccccCCCC-CCCCccccCcc------------
Q 010495 1 MYSNQELMPLFPSENLQCEEF-PSYQHIYQNEFLSRKHKKQKEEDIAICVCRVDPN-NLESSCGERCL------------ 66 (509)
Q Consensus 1 ~~~~~e~~pl~~~n~~~~~~p-P~y~~I~~n~~~~~~~~~~~~~~~~~C~C~~~c~-~~~~~C~~~C~------------ 66 (509)
.+.++|..||+++|+++.+.| |.|+||.++++..... ........+|.|..+|. ...+.|...-.
T Consensus 2 is~g~e~~pI~~~N~vd~~~~p~~F~Yi~~~~~~~~~~-~~~~~~~~~C~C~~~C~~~~~C~C~~~~~~~~~Y~~~g~l~ 80 (103)
T PF05033_consen 2 ISRGKENVPIPVVNDVDDEPPPPNFEYIPENIYGEGVP-DIDPEFLQGCDCSGDCSNPSNCECLQRNGGIFAYDSNGRLR 80 (103)
T ss_dssp TTCTSSSS-EEEEESSSS--SSTSSEE-SS-EESTTSS--TBGGGTS----SSSSTCTTTSHHHCCTSSS-SB-TTSSBS
T ss_pred CCCCccCCCEEEEeCCCCCCCCCCeEEeeeEEcCCCcc-ccccccCccCccCCCCCCCCCCcCccccCccccccCCCcCc
Confidence 367899999999999988888 6899999999877544 33445667999988783 34555654332
Q ss_pred --ccccccccCCCCCCCCCCCCCc
Q 010495 67 --NVLTSTECTPGYCPCGVFCKNQ 88 (509)
Q Consensus 67 --n~~~~~EC~p~~C~C~~~C~Nr 88 (509)
.....+||+ ..|.|+..|.||
T Consensus 81 ~~~~~~i~EC~-~~C~C~~~C~NR 103 (103)
T PF05033_consen 81 IPDKPPIFECN-DNCGCSPSCRNR 103 (103)
T ss_dssp SSSTSEEE----TTSSS-TTSTT-
T ss_pred cCCCCeEEeCC-CCCCCCCCCCCC
Confidence 123469999 599999999997
No 15
>smart00468 PreSET N-terminal to some SET domains. A Cys-rich putative Zn2+-binding domain that occurs N-terminal to some SET domains. Function is unknown. Unpublished.
Probab=98.22 E-value=1.8e-06 Score=74.38 Aligned_cols=63 Identities=13% Similarity=0.256 Sum_probs=49.4
Q ss_pred CCCcccccCcccccCCCCCCC-CCceeeccccccccccccCCCCCCccccccCCCCCCC-Ccccc
Q 010495 1 MYSNQELMPLFPSENLQCEEF-PSYQHIYQNEFLSRKHKKQKEEDIAICVCRVDPNNLE-SSCGE 63 (509)
Q Consensus 1 ~~~~~e~~pl~~~n~~~~~~p-P~y~~I~~n~~~~~~~~~~~~~~~~~C~C~~~c~~~~-~~C~~ 63 (509)
++.++|.+||+++|++|.+.| +.|+||.++.+..........+...+|+|..+|.... +.|..
T Consensus 4 is~G~E~~pI~~vN~vD~~~~p~~F~Yi~~~~~~~gv~~~~~~~~~~gC~C~~~C~~~~~C~C~~ 68 (98)
T smart00468 4 ISNGKENVPVPLVNEVDEDPPPPDFEYISEYIYGQGVPIDRSPSPLVGCSCSGDCSSSNKCECAR 68 (98)
T ss_pred ccCCccCCCcceEecCCCCCCCCCcEECcceEcCCCcccccCCCCCCCCcCCCCCCCCCcCCcHh
Confidence 467899999999999998887 6899999999776543334556788999998887654 66643
No 16
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=98.06 E-value=3.2e-06 Score=90.10 Aligned_cols=110 Identities=19% Similarity=0.226 Sum_probs=80.0
Q ss_pred cceEEEEec--CCCceeeeeccccCCCCEEEEeeceeeCHHHHHHHHHHHHhcCCCcceee---ecC-cceeeeccc--c
Q 010495 95 YAKTKLVKT--EGRGWGLLADENIKAGQFIIEYCGEVISWKEARRRSQAYETQGLKDAYII---CLN-ALESIDATV--K 166 (509)
Q Consensus 95 ~~kleV~~s--~~kG~GLfA~edI~kGefI~EY~GEVIt~~E~~~R~~~y~~~g~~~~Y~~---~l~-~~~~IDA~~--~ 166 (509)
...+.|+.+ +..|.||++...|++|+-.+-|.|+++.... .......|++ ..+ ..++||++. .
T Consensus 27 P~~l~i~~Ssv~~~~lgV~s~~~i~~G~~FGP~~G~~~~~~~---------~~~~n~~y~W~I~~~d~~~~~iDg~d~~~ 97 (396)
T KOG2461|consen 27 PPELRIKPSSVPVTGLGVWSNASILPGTSFGPFEGEIIASID---------SKSANNRYMWEIFSSDNGYEYIDGTDEEH 97 (396)
T ss_pred CCceEeeccccCCccccccccccccCcccccCccCccccccc---------cccccCcceEEEEeCCCceEEeccCChhh
Confidence 356777776 5678999999999999999999999721110 0111122333 332 347899877 5
Q ss_pred cCcccccCCCCCC---ccceeeeeecCeeEEEEEEecCCCCCCeEEEeCCCCCC
Q 010495 167 GSHARFINHSCQP---NCETRKWNVLGEIRVGIFAKQDIPVGTELAYDYNFEWY 217 (509)
Q Consensus 167 GN~aRFINHSC~P---Nc~~~~~~v~g~~rI~~fA~RDIkaGEELT~DYg~~~~ 217 (509)
+|+.||+|=.++. |.... .....|.++|+|+|.+||||.+.|+.+|-
T Consensus 98 sNWmRYV~~Ar~~eeQNL~A~----Q~~~~Ifyrt~r~I~p~eELlVWY~~e~~ 147 (396)
T KOG2461|consen 98 SNWMRYVNSARSEEEQNLLAF----QIGENIFYRTIRDIRPNEELLVWYGSEYA 147 (396)
T ss_pred cceeeeecccCChhhhhHHHH----hccCceEEEecccCCCCCeEEEEeccchH
Confidence 8999999998876 66442 23347899999999999999999998763
No 17
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=96.63 E-value=0.0033 Score=71.52 Aligned_cols=233 Identities=25% Similarity=0.379 Sum_probs=160.2
Q ss_pred CCcccccCcccccCCCCCCCCCceeecccccccc-ccc-cCCCCCCccccccCCCCC-CCCccc-------cCccc----
Q 010495 2 YSNQELMPLFPSENLQCEEFPSYQHIYQNEFLSR-KHK-KQKEEDIAICVCRVDPNN-LESSCG-------ERCLN---- 67 (509)
Q Consensus 2 ~~~~e~~pl~~~n~~~~~~pP~y~~I~~n~~~~~-~~~-~~~~~~~~~C~C~~~c~~-~~~~C~-------~~C~n---- 67 (509)
..+-+-+|++++|.++.+.||.-++-....-... ... ...-+...+|.|...|.+ ..+.|. ..|+-
T Consensus 881 ~~g~sg~~~p~~~~~d~~~~~~c~d~~~~~~~~~~~~~s~~~~~~~~~~s~d~hp~d~~~~~~~~~~~~~~~~cpp~~s~ 960 (1262)
T KOG1141|consen 881 SLGTSGIPIPLVNSVDNDEPPSCEDSKRRFQYNDQVDISSVSRDFCSGCSCDGHPSDASKCECQQLSIEAMKRCPPNLSF 960 (1262)
T ss_pred hccccCCCCccccccccCCCccccccceeecccccchhhhhccccccccccCCCCcccCcccCCCCChhhhcCCCCcccc
Confidence 4456678999999999999987666544322111 111 112234456777655544 223332 13432
Q ss_pred ---------------c--ccccccCCCCCCCCCCCCCccccccccce--------EEEEecCCCceeeeeccccCCCCEE
Q 010495 68 ---------------V--LTSTECTPGYCPCGVFCKNQRFQKCQYAK--------TKLVKTEGRGWGLLADENIKAGQFI 122 (509)
Q Consensus 68 ---------------~--~~~~EC~p~~C~C~~~C~Nr~~Qk~~~~k--------leV~~s~~kG~GLfA~edI~kGefI 122 (509)
+ +-.+||+ ..|.|...|.|+.+|.+...+ +.||++...|||+.+..||+.-+||
T Consensus 961 d~~~~~~eS~~~~ns~~~~~f~e~~-~hss~~~~e~~~~v~~~~~~~me~~s~~~l~i~~~~~~~~~~~edtD~~~~~~~ 1039 (1262)
T KOG1141|consen 961 DGHDELYESSEKQNSFLKLFFFECN-DHSSCHRKEYNRVVQNNIKYPMEVSSFNDLQIFKTAQSGWGVREDTDIPQSTFI 1039 (1262)
T ss_pred Cchhhhhhhhhhcchhhhccceecc-ccchhcccccchhhhcCCccceeeeecccccccccccccccccccccCCCCccc
Confidence 2 1246898 689999999999988766544 4567778899999999999999999
Q ss_pred EEeeceeeCHHHHHHH----------------------------------------------------------------
Q 010495 123 IEYCGEVISWKEARRR---------------------------------------------------------------- 138 (509)
Q Consensus 123 ~EY~GEVIt~~E~~~R---------------------------------------------------------------- 138 (509)
++|+|...+..-+..-
T Consensus 1040 ~~~~~~ppt~~l~~~~r~aqad~~sn~~D~~~~~~l~es~~~~~T~~r~~t~~~~~~~~~d~dd~q~I~k~ve~qd~~~~ 1119 (1262)
T KOG1141|consen 1040 CTYVGAPPTDDLADELRNAQADQYSNDLDLKDTVELEESREDHETDFRGDTSDYDDEEGSDGDDGQDIMKMVERQDSSES 1119 (1262)
T ss_pred ccccCCCCchhhHHHHhhhhhccccCccchhhhhhhhhcccccccccCCCCCCCcccccccCccHHHHHHHhhccccccc
Confidence 9999998764433210
Q ss_pred ---------HHHHHh-cCC----------Ccceeeec-------------------CcceeeecccccCcccccCCCCCC
Q 010495 139 ---------SQAYET-QGL----------KDAYIICL-------------------NALESIDATVKGSHARFINHSCQP 179 (509)
Q Consensus 139 ---------~~~y~~-~g~----------~~~Y~~~l-------------------~~~~~IDA~~~GN~aRFINHSC~P 179 (509)
+..... .+. ...-++.. -.-++|||+..||++||+||||.|
T Consensus 1120 ~~~T~~~~RQ~~~~s~k~~~~~s~~~~~~ts~~~~~~dkges~~~~~~~~~~y~~~~~~yvIDAk~eGNlGRfLNHSC~P 1199 (1262)
T KOG1141|consen 1120 GEETKRLTRQKRKQSKKSGKGGSVEKDDTTSRDSMEKDKGESKDEPVFNWDKYFEPFPLYVIDAKQEGNLGRFLNHSCDP 1199 (1262)
T ss_pred ccccchhhhhhhhhhhhcccCccccccccCccchhhhccCccCcccccchhhccCCCceEEEecccccchhhhhccCCCc
Confidence 000000 000 00000000 012589999999999999999999
Q ss_pred ccceeeeeec----CeeEEEEEEecCCCCCCeEEEeCCCCCCC--CcceEEeeCCCCCcccc
Q 010495 180 NCETRKWNVL----GEIRVGIFAKQDIPVGTELAYDYNFEWYG--GTKVRCLCGAATCSGFL 235 (509)
Q Consensus 180 Nc~~~~~~v~----g~~rI~~fA~RDIkaGEELT~DYg~~~~~--~~~~~ClCGa~~CRG~L 235 (509)
|+.++.++++ ..+.++|||.|-|++|+||||||++.-.. .....|+||+.+|||.|
T Consensus 1200 Nl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~~keL~C~CGa~~CrgrL 1261 (1262)
T KOG1141|consen 1200 NLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVATKELTCHCGAENCRGRL 1261 (1262)
T ss_pred cceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccccccccceEEEecChhhhhccc
Confidence 9999999886 46789999999999999999999986543 34678999999999976
No 18
>smart00508 PostSET Cysteine-rich motif following a subset of SET domains.
Probab=95.95 E-value=0.0033 Score=42.39 Aligned_cols=18 Identities=61% Similarity=1.328 Sum_probs=15.5
Q ss_pred ceEEeeCCCCCccccCcc
Q 010495 221 KVRCLCGAATCSGFLGAK 238 (509)
Q Consensus 221 ~~~ClCGa~~CRG~Lg~k 238 (509)
.+.|+||+++|||+|+..
T Consensus 2 ~~~C~CGs~~CRG~l~~~ 19 (26)
T smart00508 2 KQPCLCGAPNCRGFLGXX 19 (26)
T ss_pred CeeeeCCCccccceeccc
Confidence 478999999999999653
No 19
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=93.07 E-value=0.071 Score=58.50 Aligned_cols=222 Identities=15% Similarity=0.060 Sum_probs=125.2
Q ss_pred CCCCCCCceee-----ccccccccccccCCCCCCccccccCC-CCCCCCccccCccccccccccCCCCCCCCCCCCCccc
Q 010495 17 QCEEFPSYQHI-----YQNEFLSRKHKKQKEEDIAICVCRVD-PNNLESSCGERCLNVLTSTECTPGYCPCGVFCKNQRF 90 (509)
Q Consensus 17 ~~~~pP~y~~I-----~~n~~~~~~~~~~~~~~~~~C~C~~~-c~~~~~~C~~~C~n~~~~~EC~p~~C~C~~~C~Nr~~ 90 (509)
..+.||..-++ .+++.........+.....+|.+... .......|+..+.+....-+|. -.+.++..+.+-..
T Consensus 29 ~~~~~~~~~~~~n~~i~~~v~~~~~~~~~~~~~~~g~~~~~s~p~~~~~~~~~~~~~~~~~~~c~-vc~~ggs~v~~~s~ 107 (463)
T KOG1081|consen 29 SLETPPGSAPLGNLKITRTVRLGKDLFESDACGGIGGSVSASEPNHVSPEPGSRRHPKIEPSECF-VCFKGGSLVTCKSR 107 (463)
T ss_pred ccCCCccccccCCceeeeeeecCcChhhcccccccccccccCCccccCCCCCchhccCCCcchhc-cccCCCccceeccc
Confidence 34445544443 33554433333344445567777654 3333345666666666655665 23334332222111
Q ss_pred cccccceEEEEecCCCcee---eeeccccCCCCEEEEeeceeeCHH--HHHHHHHH-HHhcCCCcceeeecCcceeeecc
Q 010495 91 QKCQYAKTKLVKTEGRGWG---LLADENIKAGQFIIEYCGEVISWK--EARRRSQA-YETQGLKDAYIICLNALESIDAT 164 (509)
Q Consensus 91 Qk~~~~kleV~~s~~kG~G---LfA~edI~kGefI~EY~GEVIt~~--E~~~R~~~-y~~~g~~~~Y~~~l~~~~~IDA~ 164 (509)
+..-...-.-+..+..+++ ..|...+..|++|+.++|+..-+. ....+... ........+|....-.....++.
T Consensus 108 ~~~~~r~c~~~~~~~c~~~~~d~~~~~~~~~~~~vw~~vg~~~~~~c~vc~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 187 (463)
T KOG1081|consen 108 IQAPHRKCKPAQLEKCSKRCTDCRAFKKREVGDLVWSKVGEYPWWPCMVCHDPLLPKGMKHDHVNFFGCYAWTHEKRVFP 187 (463)
T ss_pred cccccccCcCccCcccccCCcceeeeccccceeEEeEEcCcccccccceecCcccchhhccccceeccchhhHHHhhhhh
Confidence 1100111112234455565 777889999999999999986544 11111111 00000001111100011134444
Q ss_pred cccCcccccCCCCCCccceeeeeecCeeEEEEEEecCCCCCCe------EEEeCCCCCCCCcceEEeeCCCCCccccCcc
Q 010495 165 VKGSHARFINHSCQPNCETRKWNVLGEIRVGIFAKQDIPVGTE------LAYDYNFEWYGGTKVRCLCGAATCSGFLGAK 238 (509)
Q Consensus 165 ~~GN~aRFINHSC~PNc~~~~~~v~g~~rI~~fA~RDIkaGEE------LT~DYg~~~~~~~~~~ClCGa~~CRG~Lg~k 238 (509)
..|+..++++|++.|+-....+...+..++..++.+-++.+.. .+-+|....|.. .+.+.+++.+|..-+...
T Consensus 188 ~~g~~~~~l~~~~~~~s~~~~~~~~~~~r~~~~~~q~~~~~~~~e~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~~ 266 (463)
T KOG1081|consen 188 YEGQSSKLIPHSKKPASTMSEKIKEAKARFGKLKAQWEAGIKQKELKPEEYKRIKVVCPIG-DQQIYSAAVSCIKKLLAK 266 (463)
T ss_pred ccchHHHhhhhccccchhhhhhhhcccchhhhcccchhhccchhhcccccccccccccCcC-cccccchhhhhhhhcccc
Confidence 5999999999999999988888888899999999999988887 666666554433 345888888888776654
Q ss_pred cC
Q 010495 239 SR 240 (509)
Q Consensus 239 ~~ 240 (509)
..
T Consensus 267 ~~ 268 (463)
T KOG1081|consen 267 PT 268 (463)
T ss_pred cc
Confidence 43
No 20
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=92.13 E-value=0.23 Score=52.66 Aligned_cols=53 Identities=26% Similarity=0.486 Sum_probs=38.4
Q ss_pred ccCCCCCCccceeeeeecCeeEEEEEEecCCCCCC-eEEEeCCCCCCCC----------cceEEeeCC
Q 010495 172 FINHSCQPNCETRKWNVLGEIRVGIFAKQDIPVGT-ELAYDYNFEWYGG----------TKVRCLCGA 228 (509)
Q Consensus 172 FINHSC~PNc~~~~~~v~g~~rI~~fA~RDIkaGE-ELT~DYg~~~~~~----------~~~~ClCGa 228 (509)
++||||.||+.. ...+. ...+++..++.+++ ||++.|-...|+. ..|.|.|+.
T Consensus 208 ~~~hsC~pn~~~---~~~~~-~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~r~~~l~~~~~f~c~c~r 271 (482)
T KOG2084|consen 208 LFNHSCFPNISV---IFDGR-GLALLVPAGIDAGEEELTISYTDPLLSTASRQKQLRQSKLFSCQCPR 271 (482)
T ss_pred hcccCCCCCeEE---EECCc-eeEEEeecccCCCCCEEEEeecccccCHHHHHHHHhhccceeeecCC
Confidence 899999999982 23343 34566777777776 9999998776653 237888875
No 21
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=82.87 E-value=0.93 Score=49.64 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=31.4
Q ss_pred cccCCCCCCccceeeeeecCeeEEEEEEecCCCCCCeEEEeCCC
Q 010495 171 RFINHSCQPNCETRKWNVLGEIRVGIFAKQDIPVGTELAYDYNF 214 (509)
Q Consensus 171 RFINHSC~PNc~~~~~~v~g~~rI~~fA~RDIkaGEELT~DYg~ 214 (509)
=+.||++.+.- ..+......+.+++.++|.+||||+++||.
T Consensus 238 D~~NH~~~~~~---~~~~~~d~~~~l~~~~~v~~geevfi~YG~ 278 (472)
T KOG1337|consen 238 DLLNHSPEVIK---AGYNQEDEAVELVAERDVSAGEEVFINYGP 278 (472)
T ss_pred HhhccCchhcc---ccccCCCCcEEEEEeeeecCCCeEEEecCC
Confidence 37899999911 122223338899999999999999999996
No 22
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=42.58 E-value=15 Score=28.30 Aligned_cols=15 Identities=40% Similarity=0.676 Sum_probs=11.3
Q ss_pred EEEEecCCCCCCeEE
Q 010495 195 GIFAKQDIPVGTELA 209 (509)
Q Consensus 195 ~~fA~RDIkaGEELT 209 (509)
.++|.|||++|+.|+
T Consensus 3 vvVA~~di~~G~~i~ 17 (63)
T PF08666_consen 3 VVVAARDIPAGTVIT 17 (63)
T ss_dssp EEEESSTB-TT-BEC
T ss_pred EEEEeCccCCCCEEc
Confidence 478999999999994
No 23
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.41 E-value=16 Score=39.72 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=31.8
Q ss_pred cccccCCC---CCCccceeeeeecCeeEEEEEEecCCCCCCeEEEeCCCC
Q 010495 169 HARFINHS---CQPNCETRKWNVLGEIRVGIFAKQDIPVGTELAYDYNFE 215 (509)
Q Consensus 169 ~aRFINHS---C~PNc~~~~~~v~g~~rI~~fA~RDIkaGEELT~DYg~~ 215 (509)
.+-|+||- |..|..+ +...+-++|.|+|++|+|+.-.||..
T Consensus 218 ~ad~lNhd~~k~nanl~y------~~NcL~mva~r~iekgdev~n~dg~~ 261 (466)
T KOG1338|consen 218 IADFLNHDGLKANANLRY------EDNCLEMVADRNIEKGDEVDNSDGLK 261 (466)
T ss_pred hhhhhccchhhcccceec------cCcceeeeecCCCCCccccccccccC
Confidence 47799994 6666644 34466889999999999999999743
No 24
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=38.95 E-value=14 Score=42.42 Aligned_cols=28 Identities=32% Similarity=0.794 Sum_probs=24.5
Q ss_pred cccCccccccccccCCCCCCCCCCCCCcc
Q 010495 61 CGERCLNVLTSTECTPGYCPCGVFCKNQR 89 (509)
Q Consensus 61 C~~~C~n~~~~~EC~p~~C~C~~~C~Nr~ 89 (509)
|+..|+|......|. ..|.|...|+||.
T Consensus 512 c~~~C~C~~n~~~CE-k~C~C~~dC~nrF 539 (739)
T KOG1079|consen 512 CGVGCPCIDNETFCE-KFCYCSPDCRNRF 539 (739)
T ss_pred CCCCCcccccCcchh-hcccCCHHHHhcC
Confidence 888999999998898 6899999998875
No 25
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=36.40 E-value=20 Score=31.20 Aligned_cols=17 Identities=35% Similarity=0.630 Sum_probs=12.9
Q ss_pred EEEEEecCCCCCCeEEE
Q 010495 194 VGIFAKQDIPVGTELAY 210 (509)
Q Consensus 194 I~~fA~RDIkaGEELT~ 210 (509)
.+|||+|||++||-|.+
T Consensus 2 rGl~At~dI~~Ge~I~~ 18 (162)
T PF00856_consen 2 RGLFATRDIKAGEVILI 18 (162)
T ss_dssp EEEEESS-B-TTEEEEE
T ss_pred EEEEECccCCCCCEEEE
Confidence 37999999999998873
No 26
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=33.26 E-value=31 Score=26.01 Aligned_cols=37 Identities=35% Similarity=0.746 Sum_probs=27.6
Q ss_pred CccccccCCCCCCCCcccc-CccccccccccCCCCCCCCCCCCCcc
Q 010495 45 IAICVCRVDPNNLESSCGE-RCLNVLTSTECTPGYCPCGVFCKNQR 89 (509)
Q Consensus 45 ~~~C~C~~~c~~~~~~C~~-~C~n~~~~~EC~p~~C~C~~~C~Nr~ 89 (509)
..+|.|+- +.|.. .|.++.....|++ .|.| ..|.|..
T Consensus 3 ~~gC~Ckk------s~Clk~YC~Cf~~g~~C~~-~C~C-~~C~N~~ 40 (42)
T PF03638_consen 3 KKGCNCKK------SKCLKLYCECFQAGRFCTP-NCKC-QNCKNTE 40 (42)
T ss_pred CCCCcccC------cChhhhhCHHHHCcCcCCC-Cccc-CCCCCcC
Confidence 35788862 34544 7899999999995 7999 6788864
No 27
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=21.77 E-value=76 Score=26.33 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=16.7
Q ss_pred eEEEEEEecCCCCCCeEEEeCC
Q 010495 192 IRVGIFAKQDIPVGTELAYDYN 213 (509)
Q Consensus 192 ~rI~~fA~RDIkaGEELT~DYg 213 (509)
.-.++||.++|++|+ +.+.|.
T Consensus 10 ~G~gl~a~~~i~~g~-~i~~~~ 30 (116)
T smart00317 10 KGWGVRATEDIPKGE-FIGEYV 30 (116)
T ss_pred CcEEEEECCccCCCC-EEEEEE
Confidence 357899999999999 555554
Done!