BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010496
(509 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 111 LGLDRNNVMVGTALLDMYAKFGRMDLATVVFDA---MRVKSSFTWNAMIDGYMRRGDIES 167
L LD + L + Y K G D A + + +S+ W + + Y ++GD +
Sbjct: 28 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 87
Query: 168 AVRMFD---EMPVRDAISWTALLNGFVKRGYFEEALECFRE 205
A+ + E+ R A +W L N + K+G ++EA+E +++
Sbjct: 88 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128
Score = 37.0 bits (84), Expect = 0.025, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 152 WNAMIDGYMRRGDIESAVRMFD---EMPVRDAISWTALLNGFVKRGYFEEALECFRE 205
W + + Y ++GD + A+ + E+ R A +W L N + K+G ++EA+E +++
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 37.7 bits (86), Expect = 0.015, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 148 SSFTWNAMIDGYMRRGDIESAVRMFD---EMPVRDAISWTALLNGFVKRGYFEEALECFR 204
S+ W + + Y ++GD + A+ + E+ R A +W L N + K+G ++EA+E ++
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 61
Query: 205 E 205
+
Sbjct: 62 K 62
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 35.8 bits (81), Expect = 0.054, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 148 SSFTWNAMIDGYMRRGDIESAVRMFD---EMPVRDAISWTALLNGFVKRGYFEEALECFR 204
S+ W + + Y ++GD + A+ + E+ +A +W L N + K+G ++EA+E ++
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 205 E 205
+
Sbjct: 68 K 68
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 35.8 bits (81), Expect = 0.054, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 148 SSFTWNAMIDGYMRRGDIESAVRMFD---EMPVRDAISWTALLNGFVKRGYFEEALECFR 204
S+ W + + Y ++GD + A+ + E+ +A +W L N + K+G ++EA+E ++
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 205 E 205
+
Sbjct: 68 K 68
Score = 35.0 bits (79), Expect = 0.090, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 152 WNAMIDGYMRRGDIESAVRMFD---EMPVRDAISWTALLNGFVKRGYFEEALECFRE 205
W + + Y ++GD + A+ + E+ +A +W L N + K+G ++EA+E +++
Sbjct: 46 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 102
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 35.4 bits (80), Expect = 0.066, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 148 SSFTWNAMIDGYMRRGDIESAVRMFD---EMPVRDAISWTALLNGFVKRGYFEEALECFR 204
S+ W + + Y ++GD + A+ + E+ +A +W L N + K+G +++A+E ++
Sbjct: 8 SAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQ 67
Query: 205 E 205
+
Sbjct: 68 K 68
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 152 WNAMIDGYMRRGDIESAVRMFD---EMPVRDAISWTALLNGFVKRGYFEEALECFRE 205
W + + Y ++GD + A+ + E+ +A +W N + K+G +++A+E +++
Sbjct: 46 WYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQK 102
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 35.4 bits (80), Expect = 0.082, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 148 SSFTWNAMIDGYMRRGDIESAVRMFD---EMPVRDAISWTALLNGFVKRGYFEEALECFR 204
S+ W + + Y ++GD + A+ + E+ +A +W L N + K+G ++EA+E ++
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 205 E 205
+
Sbjct: 68 K 68
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 152 WNAMIDGYMRRGDIESAVRMFD---EMPVRDAISWTALLNGFVKRGYFEEALECFRE 205
W + + Y ++GD + A+ + E+ +A +W L N + K+G ++EA+E +++
Sbjct: 46 WYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 102
>pdb|1QVW|A Chain A, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
pdb|1QVW|B Chain B, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
Length = 237
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 281 LVSWNSIIV--GFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHA 329
L S+N + G FV EAL FN+ +KEGF+ D VS TG H+
Sbjct: 10 LTSYNDVFYSDGMKTGVFVVEALHPFNTFRKEGFEVDFVSETGKFGWDEHS 60
>pdb|1QVZ|A Chain A, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
pdb|1QVZ|B Chain B, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
Length = 237
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 281 LVSWNSIIV--GFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHA 329
L S+N + G FV EAL FN+ +KEGF+ D VS TG H+
Sbjct: 10 LTSYNDVFYSDGXKTGVFVVEALHPFNTFRKEGFEVDFVSETGKFGWDEHS 60
>pdb|1QVV|A Chain A, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
pdb|1QVV|B Chain B, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
pdb|1QVV|C Chain C, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
pdb|1QVV|D Chain D, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
Length = 237
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 281 LVSWNSIIV--GFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHA 329
L S+N + G FV EAL FN+ +KEGF+ D VS TG H+
Sbjct: 10 LTSYNDVFYSDGAKTGVFVVEALHPFNTFRKEGFEVDFVSETGKFGWDEHS 60
>pdb|1RW7|A Chain A, Crystal Structure Of Ydr533cp
Length = 243
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 281 LVSWNSIIV--GFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHA 329
L S+N + G FV EAL FN+ +KEGF+ D VS TG H+
Sbjct: 10 LTSYNDVFYSDGAKTGVFVVEALHPFNTFRKEGFEVDFVSETGKFGWDEHS 60
>pdb|3KKL|A Chain A, Crystal Structure Of Functionally Unknown Hsp33 From
Saccharomyces Cerevisiae
pdb|3KKL|B Chain B, Crystal Structure Of Functionally Unknown Hsp33 From
Saccharomyces Cerevisiae
Length = 244
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 278 KRTLVSWNSIIVGFAVNG-----FVGEALEYFNSMQKEGFKPDGVSFTGALTACSH 328
KR L+S S F +G FV E L F++ +K GF+ D VS TG H
Sbjct: 4 KRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGFGWDEH 59
>pdb|3MII|A Chain A, Crystal Structure Of Y0r391cpHSP33 FROM SACCHAROMYCES
CEREVISIAE
pdb|3MII|B Chain B, Crystal Structure Of Y0r391cpHSP33 FROM SACCHAROMYCES
CEREVISIAE
Length = 245
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 278 KRTLVSWNSIIVGFAVNG-----FVGEALEYFNSMQKEGFKPDGVSFTGALTACSH 328
KR L+S S F +G FV E L F++ +K GF+ D VS TG H
Sbjct: 12 KRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGFGWDEH 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,134,390
Number of Sequences: 62578
Number of extensions: 627187
Number of successful extensions: 1327
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1312
Number of HSP's gapped (non-prelim): 22
length of query: 509
length of database: 14,973,337
effective HSP length: 103
effective length of query: 406
effective length of database: 8,527,803
effective search space: 3462288018
effective search space used: 3462288018
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)