BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010496
(509 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750,
chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2
SV=1
Length = 500
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/474 (66%), Positives = 379/474 (79%), Gaps = 2/474 (0%)
Query: 33 IQTNNSKSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCAD 92
IQ +N +ST TV WTS I+ R+GR+AEAA EF+ MTL G PNHITFI LLSGC D
Sbjct: 25 IQRHN-QSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGD 83
Query: 93 FPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTW 152
F S LG ++HG CKLGLDRN+VMVGTA++ MY+K GR A +VFD M K+S TW
Sbjct: 84 FTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTW 143
Query: 153 NAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVE 212
N MIDGYMR G +++A +MFD+MP RD ISWTA++NGFVK+GY EEAL FREMQISGV+
Sbjct: 144 NTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVK 203
Query: 213 PDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQV 272
PDYV II+ LNAC N+G L GLW+HRYVL QDFK+NV+V N+LIDLY RCGC+EFARQV
Sbjct: 204 PDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQV 263
Query: 273 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLI 332
F M KRT+VSWNS+IVGFA NG E+L YF MQ++GFKPD V+FTGALTACSH GL+
Sbjct: 264 FYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLV 323
Query: 333 EDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLA 392
E+GLRYF IMK YR+SPRIEHYGC+VDLYSRAGRLEDAL +V++MPMKPNEVV+GSLLA
Sbjct: 324 EEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLA 383
Query: 393 ACRTKG-DIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQK 451
AC G +I+LAERLMK+L DL+ SNYV+L+NMYAA GKW+GA K+RR MKG G++K
Sbjct: 384 ACSNHGNNIVLAERLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKK 443
Query: 452 KPGLSSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPETVAGEL 505
+PG SSIEI +H FMAGD +H+E+ +I +LEL+S DL+L G V ET+AG+L
Sbjct: 444 QPGFSSIEIDDCMHVFMAGDNAHVETTYIREVLELISSDLRLQGCVVETLAGDL 497
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 370 bits (950), Expect = e-101, Method: Compositional matrix adjust.
Identities = 172/411 (41%), Positives = 274/411 (66%), Gaps = 3/411 (0%)
Query: 78 PNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLA 137
P+ TF + CA S +LG +HG +CK G R +V+ AL+DMY KF + A
Sbjct: 107 PDRFTFPFMFKSCASLGS--CYLGKQVHGHLCKFG-PRFHVVTENALIDMYMKFDDLVDA 163
Query: 138 TVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFE 197
VFD M + +WN+++ GY R G ++ A +F M + +SWTA+++G+ G +
Sbjct: 164 HKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYV 223
Query: 198 EALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLI 257
EA++ FREMQ++G+EPD +++ISVL +CA +G+L +G WIH Y ++ F VCN LI
Sbjct: 224 EAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALI 283
Query: 258 DLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGV 317
++YS+CG I A Q+F +M + ++SW+++I G+A +G A+E FN MQ+ KP+G+
Sbjct: 284 EMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGI 343
Query: 318 SFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVEN 377
+F G L+ACSH G+ ++GLRYFD+M++ Y++ P+IEHYGC++D+ +RAG+LE A+ + +
Sbjct: 344 TFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKT 403
Query: 378 MPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGA 437
MPMKP+ + GSLL++CRT G++ +A M +LV+L+P NYVLLAN+YA +GKW+
Sbjct: 404 MPMKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDV 463
Query: 438 GKIRRTMKGRGIQKKPGLSSIEIGSGIHEFMAGDRSHIESEHIYSMLELLS 488
++R+ ++ ++K PG S IE+ + + EF++GD S I +L+L +
Sbjct: 464 SRLRKMIRNENMKKTPGGSLIEVNNIVQEFVSGDNSKPFWTEISIVLQLFT 514
Score = 95.5 bits (236), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 81/373 (21%), Positives = 164/373 (43%), Gaps = 83/373 (22%)
Query: 147 KSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREM 206
+SSF M+D + D++ A R+F+++ + + +++ + + + + ++++
Sbjct: 40 QSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQL 99
Query: 207 QISGVE-PDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGC 265
E PD T + +CA++G+ +G +H ++ K + +V N LID+Y +
Sbjct: 100 LRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDD 159
Query: 266 IEFARQVFQRMHKRTLVSWNSIIVGFA--------------------------VNGFVG- 298
+ A +VF M++R ++SWNS++ G+A ++G+ G
Sbjct: 160 LVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGI 219
Query: 299 ----EALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR--- 351
EA+++F MQ G +PD +S L +C+ G +E G K I+ + R
Sbjct: 220 GCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELG-------KWIHLYAERRGF 272
Query: 352 IEHYG---CIVDLYSRAGRLEDAL----------------------------------NV 374
++ G ++++YS+ G + A+ N
Sbjct: 273 LKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNE 332
Query: 375 VENMPMKPNEVVLGSLLAACRTKGDIILAER---LMKYLVDLDPGVDSNYVLLANMYAAV 431
++ +KPN + LL+AC G R +M+ ++P ++ +Y L ++ A
Sbjct: 333 MQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIE-HYGCLIDVLARA 391
Query: 432 GKWDGAGKIRRTM 444
GK + A +I +TM
Sbjct: 392 GKLERAVEITKTM 404
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/226 (19%), Positives = 96/226 (42%), Gaps = 21/226 (9%)
Query: 256 LIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFK-P 314
++D + +++A ++F ++ + +NSII + N + + + + ++ F+ P
Sbjct: 48 MVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELP 107
Query: 315 DGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR--IEHYGCIVDLYSRAGRLEDAL 372
D +F +C+ G G + + + + PR + ++D+Y + L DA
Sbjct: 108 DRFTFPFMFKSCASLGSCYLGKQ---VHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAH 164
Query: 373 NVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVG 432
V + M + + + SLL+ G + A+ L ++D ++ + + Y +G
Sbjct: 165 KVFDEM-YERDVISWNSLLSGYARLGQMKKAKGLFHLMLD---KTIVSWTAMISGYTGIG 220
Query: 433 KWDGAGKIRRTMKGRGIQKK-----------PGLSSIEIGSGIHEF 467
+ A R M+ GI+ L S+E+G IH +
Sbjct: 221 CYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLY 266
Score = 40.4 bits (93), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 18/165 (10%)
Query: 45 TVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMI 104
+ W++ IS + G A F M PN ITF+ LLS C+ +G
Sbjct: 307 VISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSH-------VGMWQ 359
Query: 105 HGLVCKLGLDRNNVMVGT------ALLDMYAKFGRMDLATVVFDAMRVK-SSFTWNAMID 157
GL + R + + L+D+ A+ G+++ A + M +K S W +++
Sbjct: 360 EGLR-YFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLS 418
Query: 158 GYMRRGDIESAVRMFD---EMPVRDAISWTALLNGFVKRGYFEEA 199
G+++ A+ D E+ D ++ L N + G +E+
Sbjct: 419 SCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDV 463
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 364 bits (934), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 193/503 (38%), Positives = 302/503 (60%), Gaps = 16/503 (3%)
Query: 7 ATILPQPFLPHQQNPNQNL------TTTPQISIQTNNSKSTVNPTV-QWTSSISRHCRSG 59
A IL L H + P NL + +I T++P + +T++I+ +G
Sbjct: 50 AAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASING 109
Query: 60 RIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVM 119
+A L + ++ NPN TF +LL C+ G +IH V K GL +
Sbjct: 110 LKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKS------GKLIHTHVLKFGLGIDP-Y 162
Query: 120 VGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRD 179
V T L+D+YAK G + A VFD M +S + AMI Y ++G++E+A +FD M RD
Sbjct: 163 VATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERD 222
Query: 180 AISWTALLNGFVKRGYFEEALECFREMQISGV-EPDYVTIISVLNACANVGTLGIGLWIH 238
+SW +++G+ + G+ +AL F+++ G +PD +T+++ L+AC+ +G L G WIH
Sbjct: 223 IVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIH 282
Query: 239 RYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG 298
+V + NVKVC LID+YS+CG +E A VF ++ +V+WN++I G+A++G+
Sbjct: 283 VFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQ 342
Query: 299 EALEYFNSMQK-EGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGC 357
+AL FN MQ G +P ++F G L AC+HAGL+ +G+R F+ M + Y + P+IEHYGC
Sbjct: 343 DALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGC 402
Query: 358 IVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV 417
+V L RAG+L+ A ++NM M + V+ S+L +C+ GD +L + + +YL+ L+
Sbjct: 403 LVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKN 462
Query: 418 DSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEFMAGDRSHIES 477
YVLL+N+YA+VG ++G K+R MK +GI K+PG+S+IEI + +HEF AGDR H +S
Sbjct: 463 SGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKS 522
Query: 478 EHIYSMLELLSFDLKLCGYVPET 500
+ IY+ML +S +K GYVP T
Sbjct: 523 KEIYTMLRKISERIKSHGYVPNT 545
Score = 36.2 bits (82), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 57/284 (20%), Positives = 115/284 (40%), Gaps = 32/284 (11%)
Query: 235 LWIHRYVLKQDF--KDNVKVCN-TLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGF 291
L IH +L+ + V N L Y+ G I + +F + L + + I
Sbjct: 46 LQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTA 105
Query: 292 AVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR 351
++NG +A + + P+ +F+ L +CS L + ++K + P
Sbjct: 106 SINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKS---GKLIHTHVLKFGLGIDPY 162
Query: 352 IEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTK-GDIILAERLMKYL 410
+ +VD+Y++ G + A V + MP + +V + + C K G++ A L +
Sbjct: 163 VA--TGLVDVYAKGGDVVSAQKVFDRMPER--SLVSSTAMITCYAKQGNVEAARALFDSM 218
Query: 411 VDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPG-------------LSS 457
+ D ++ ++ + YA G + A + + + G + KP + +
Sbjct: 219 CERDI---VSWNVMIDGYAQHGFPNDALMLFQKLLAEG-KPKPDEITVVAALSACSQIGA 274
Query: 458 IEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPETV 501
+E G IH F+ R + + ++++ S CG + E V
Sbjct: 275 LETGRWIHVFVKSSRIRLNVKVCTGLIDMYS----KCGSLEEAV 314
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 356 bits (913), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 171/453 (37%), Positives = 274/453 (60%), Gaps = 3/453 (0%)
Query: 48 WTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGL 107
W IS + R E+ M + +P +T + +LS C+ + L +
Sbjct: 204 WNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVS 263
Query: 108 VCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIES 167
CK ++ + AL++ YA G MD+A +F +M+ + +W +++ GY+ RG+++
Sbjct: 264 ECK---TEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKL 320
Query: 168 AVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACAN 227
A FD+MPVRD ISWT +++G+++ G F E+LE FREMQ +G+ PD T++SVL ACA+
Sbjct: 321 ARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAH 380
Query: 228 VGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSI 287
+G+L IG WI Y+ K K++V V N LID+Y +CGC E A++VF M +R +W ++
Sbjct: 381 LGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAM 440
Query: 288 IVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYR 347
+VG A NG EA++ F MQ +PD +++ G L+AC+H+G+++ ++F M+ +R
Sbjct: 441 VVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHR 500
Query: 348 VSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLM 407
+ P + HYGC+VD+ RAG +++A ++ MPM PN +V G+LL A R D +AE
Sbjct: 501 IEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAA 560
Query: 408 KYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEF 467
K +++L+P + Y LL N+YA +W ++RR + I+K PG S IE+ HEF
Sbjct: 561 KKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEF 620
Query: 468 MAGDRSHIESEHIYSMLELLSFDLKLCGYVPET 500
+AGD+SH++SE IY LE L+ + Y+P+T
Sbjct: 621 VAGDKSHLQSEEIYMKLEELAQESTFAAYLPDT 653
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/368 (26%), Positives = 157/368 (42%), Gaps = 65/368 (17%)
Query: 45 TVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMI 104
V W + I + E + M G P+ TF LL+G L G +
Sbjct: 99 VVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKR-DGGALACGKKL 157
Query: 105 HGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGD 164
H V K GL +N+ V AL+ MY+ G MD+A VFD + F+WN MI GY R +
Sbjct: 158 HCHVVKFGLG-SNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKE 216
Query: 165 IESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNA 224
+EE++E EM+ + V P VT++ VL+A
Sbjct: 217 -------------------------------YEESIELLVEMERNLVSPTSVTLLLVLSA 245
Query: 225 CANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSW 284
C+ V + +H YV + + ++++ N L++ Y+ CG ++ A ++F+ M R ++SW
Sbjct: 246 CSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISW 305
Query: 285 NSIIVGFA--------------------------VNGFV-----GEALEYFNSMQKEGFK 313
SI+ G+ ++G++ E+LE F MQ G
Sbjct: 306 TSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMI 365
Query: 314 PDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALN 373
PD + LTAC+H G +E G + ++ + ++D+Y + G E A
Sbjct: 366 PDEFTMVSVLTACAHLGSLEIG-EWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQK 424
Query: 374 VVENMPMK 381
V +M +
Sbjct: 425 VFHDMDQR 432
Score = 95.9 bits (237), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 81/335 (24%), Positives = 155/335 (46%), Gaps = 33/335 (9%)
Query: 163 GDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVL 222
G + A ++F ++P D + W ++ G+ K E + + M GV PD T +L
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141
Query: 223 NACA-NVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTL 281
N + G L G +H +V+K N+ V N L+ +YS CG ++ AR VF R K +
Sbjct: 142 NGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDV 201
Query: 282 VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDI 341
SWN +I G+ E++E M++ P V+ L+ACS ++D D+
Sbjct: 202 FSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSK---VKDK----DL 254
Query: 342 MKKIY------RVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACR 395
K+++ + P + +V+ Y+ G ++ A+ + +M + + + S++
Sbjct: 255 CKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKAR-DVISWTSIVKGYV 313
Query: 396 TKGDIILAERLMKYLVDLDPGVDS-NYVLLANMYAAVGKWDGAGKIRRTMKGRG------ 448
+G++ LA + D P D ++ ++ + Y G ++ + +I R M+ G
Sbjct: 314 ERGNLKLA----RTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEF 369
Query: 449 -----IQKKPGLSSIEIGSGIHEFMAGDRSHIESE 478
+ L S+EIG I ++ D++ I+++
Sbjct: 370 TMVSVLTACAHLGSLEIGEWIKTYI--DKNKIKND 402
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 111/253 (43%), Gaps = 45/253 (17%)
Query: 42 VNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLG 101
V + WT I + R+G E+ F M G P+ T +++L+ CA S L +G
Sbjct: 330 VRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGS--LEIG 387
Query: 102 AMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMR 161
I + K + +N+V+VG AL+DMY K G + A VF M + FTW AM+ G
Sbjct: 388 EWIKTYIDKNKI-KNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVG--- 443
Query: 162 RGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISV 221
G +EA++ F +MQ ++PD +T + V
Sbjct: 444 ----------------------------LANNGQGQEAIKVFFQMQDMSIQPDDITYLGV 475
Query: 222 LNACANVGTLGIGLWIHRYVLKQDFKDNVKVC----NTLIDLYSRCGCIEFARQVFQRMH 277
L+AC + G + ++ K ++ ++D+ R G ++ A ++ ++M
Sbjct: 476 LSACNHSGMVDQA---RKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMP 532
Query: 278 KRTLVSWNSIIVG 290
++ NSI+ G
Sbjct: 533 ----MNPNSIVWG 541
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 350 bits (899), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 174/454 (38%), Positives = 276/454 (60%), Gaps = 8/454 (1%)
Query: 45 TVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMI 104
V W S I+ ++G EA F M P+ +T +++S CA + + +G +
Sbjct: 218 VVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSA--IKVGQEV 275
Query: 105 HGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGD 164
HG V K RN++++ A +DMYAK R+ A +FD+M +++ +MI GY
Sbjct: 276 HGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAAS 335
Query: 165 IESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNA 224
++A MF +M R+ +SW AL+ G+ + G EEAL F ++ V P + + ++L A
Sbjct: 336 TKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKA 395
Query: 225 CANVGTLGIGLWIHRYVLKQDFK------DNVKVCNTLIDLYSRCGCIEFARQVFQRMHK 278
CA++ L +G+ H +VLK FK D++ V N+LID+Y +CGC+E VF++M +
Sbjct: 396 CADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMME 455
Query: 279 RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRY 338
R VSWN++I+GFA NG+ EALE F M + G KPD ++ G L+AC HAG +E+G Y
Sbjct: 456 RDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHY 515
Query: 339 FDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKG 398
F M + + V+P +HY C+VDL RAG LE+A +++E MPM+P+ V+ GSLLAAC+
Sbjct: 516 FSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHR 575
Query: 399 DIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSI 458
+I L + + + L++++P YVLL+NMYA +GKW+ +R++M+ G+ K+PG S I
Sbjct: 576 NITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWI 635
Query: 459 EIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLK 492
+I H FM D+SH + I+S+L++L +++
Sbjct: 636 KIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEMR 669
Score = 166 bits (419), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 158/299 (52%), Gaps = 2/299 (0%)
Query: 83 FITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFD 142
F LL C +++ +H V K G N + + L+D Y+K G ++ VFD
Sbjct: 22 FAKLLDSCIKSKLSAIYV-RYVHASVIKSGFS-NEIFIQNRLIDAYSKCGSLEDGRQVFD 79
Query: 143 AMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALEC 202
M ++ +TWN+++ G + G ++ A +F MP RD +W ++++GF + EEAL
Sbjct: 80 KMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCY 139
Query: 203 FREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSR 262
F M G + + SVL+AC+ + + G+ +H + K F +V + + L+D+YS+
Sbjct: 140 FAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSK 199
Query: 263 CGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGA 322
CG + A++VF M R +VSWNS+I F NG EAL+ F M + +PD V+
Sbjct: 200 CGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASV 259
Query: 323 LTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMK 381
++AC+ I+ G + K ++ I VD+Y++ R+++A + ++MP++
Sbjct: 260 ISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIR 318
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 345 bits (884), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 183/456 (40%), Positives = 273/456 (59%), Gaps = 5/456 (1%)
Query: 45 TVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMI 104
T W I S + L + RM N TF +LL C++ + I
Sbjct: 80 TFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSA--FEETTQI 137
Query: 105 HGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGD 164
H + KLG + N+V +L++ YA G LA ++FD + +WN++I GY++ G
Sbjct: 138 HAQITKLGYE-NDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGK 196
Query: 165 IESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNA 224
++ A+ +F +M ++AISWT +++G+V+ +EAL+ F EMQ S VEPD V++ + L+A
Sbjct: 197 MDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSA 256
Query: 225 CANVGTLGIGLWIHRYVLKQDFK-DNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVS 283
CA +G L G WIH Y+ K + D+V C LID+Y++CG +E A +VF+ + K+++ +
Sbjct: 257 CAQLGALEQGKWIHSYLNKTRIRMDSVLGC-VLIDMYAKCGEMEEALEVFKNIKKKSVQA 315
Query: 284 WNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMK 343
W ++I G+A +G EA+ F MQK G KP+ ++FT LTACS+ GL+E+G F M+
Sbjct: 316 WTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSME 375
Query: 344 KIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILA 403
+ Y + P IEHYGCIVDL RAG L++A ++ MP+KPN V+ G+LL ACR +I L
Sbjct: 376 RDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELG 435
Query: 404 ERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSG 463
E + + L+ +DP YV AN++A KWD A + RR MK +G+ K PG S+I +
Sbjct: 436 EEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGT 495
Query: 464 IHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPE 499
HEF+AGDRSH E E I S ++ L+ GYVPE
Sbjct: 496 THEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPE 531
Score = 106 bits (265), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 138/287 (48%), Gaps = 17/287 (5%)
Query: 104 IHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDL---ATVVFDAMRVKSSFTWNAMIDGYM 160
IH + K GL +++ + T L D A +VFD +F WN MI G+
Sbjct: 33 IHARMLKTGLMQDSYAI-TKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFS 91
Query: 161 RRGDIESAVRMFDEM----PVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYV 216
+ E ++ ++ M +A ++ +LL FEE + ++ G E D
Sbjct: 92 CSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVY 151
Query: 217 TIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRM 276
+ S++N+ A G + H + D+V N++I Y + G ++ A +F++M
Sbjct: 152 AVNSLINSYAVTGNFKLA---HLLFDRIPEPDDVS-WNSVIKGYVKAGKMDIALTLFRKM 207
Query: 277 HKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGL 336
++ +SW ++I G+ EAL+ F+ MQ +PD VS AL+AC+ G +E G
Sbjct: 208 AEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGK 267
Query: 337 RYFDIMKKIYRVSPRIEH-YGCI-VDLYSRAGRLEDALNVVENMPMK 381
+ K R+ R++ GC+ +D+Y++ G +E+AL V +N+ K
Sbjct: 268 WIHSYLNKT-RI--RMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKK 311
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 343 bits (881), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 178/449 (39%), Positives = 276/449 (61%), Gaps = 6/449 (1%)
Query: 53 SRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLG 112
S + R G EA F M G P+ I+ ++ +S C+ + + G HG V + G
Sbjct: 310 SNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRN--ILWGKSCHGYVLRNG 367
Query: 113 LDR-NNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRM 171
+ +N+ AL+DMY K R D A +FD M K+ TWN+++ GY+ G++++A
Sbjct: 368 FESWDNIC--NALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWET 425
Query: 172 FDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQIS-GVEPDYVTIISVLNACANVGT 230
F+ MP ++ +SW +++G V+ FEEA+E F MQ GV D VT++S+ +AC ++G
Sbjct: 426 FETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGA 485
Query: 231 LGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVG 290
L + WI+ Y+ K + +V++ TL+D++SRCG E A +F + R + +W + I
Sbjct: 486 LDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGA 545
Query: 291 FAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP 350
A+ G A+E F+ M ++G KPDGV+F GALTACSH GL++ G F M K++ VSP
Sbjct: 546 MAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSP 605
Query: 351 RIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYL 410
HYGC+VDL RAG LE+A+ ++E+MPM+PN+V+ SLLAACR +G++ +A + +
Sbjct: 606 EDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKI 665
Query: 411 VDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEFMAG 470
L P +YVLL+N+YA+ G+W+ K+R +MK +G++K PG SSI+I HEF +G
Sbjct: 666 QVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSG 725
Query: 471 DRSHIESEHIYSMLELLSFDLKLCGYVPE 499
D SH E +I +ML+ +S G+VP+
Sbjct: 726 DESHPEMPNIEAMLDEVSQRASHLGHVPD 754
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/367 (27%), Positives = 167/367 (45%), Gaps = 70/367 (19%)
Query: 46 VQWTSSISRHCRSGRIAEAALEFTRMTL-HGTNPNHITFITLLSGCADFPSQCLFLGAMI 104
V WTS I + R +A F RM PN +T + ++S CA L G +
Sbjct: 201 VSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLED--LETGEKV 258
Query: 105 HGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGD 164
+ + G++ N++MV +A++D YM+
Sbjct: 259 YAFIRNSGIEVNDLMV--------------------------------SALVDMYMKCNA 286
Query: 165 IESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNA 224
I+ A R+FDE + A+ + +V++G EAL F M SGV PD ++++S +++
Sbjct: 287 IDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISS 346
Query: 225 CANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSW 284
C+ + + G H YVL+ F+ +CN LID+Y +C + A ++F RM +T+V+W
Sbjct: 347 CSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTW 406
Query: 285 NSIIVGFAVNGFVG-------------------------------EALEYFNSMQ-KEGF 312
NSI+ G+ NG V EA+E F SMQ +EG
Sbjct: 407 NSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGV 466
Query: 313 KPDGVSFTGALTACSHAGLIE-DGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDA 371
DGV+ +AC H G ++ Y+ I K ++ R+ +VD++SR G E A
Sbjct: 467 NADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLG--TTLVDMFSRCGDPESA 524
Query: 372 LNVVENM 378
+++ ++
Sbjct: 525 MSIFNSL 531
Score = 133 bits (334), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 170/365 (46%), Gaps = 59/365 (16%)
Query: 48 WTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGL 107
+ S I + SG EA L F RM G +P+ TF LS CA S+ G IHGL
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACA--KSRAKGNGIQIHGL 159
Query: 108 VCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIES 167
+ K+G YAK DL F N+++ Y G+++S
Sbjct: 160 IVKMG---------------YAK----DL-------------FVQNSLVHFYAECGELDS 187
Query: 168 AVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECF-REMQISGVEPDYVTIISVLNACA 226
A ++FDEM R+ +SWT+++ G+ +R + ++A++ F R ++ V P+ VT++ V++ACA
Sbjct: 188 ARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACA 247
Query: 227 NVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNS 286
+ L G ++ ++ + N + + L+D+Y +C I+ A+++F L N+
Sbjct: 248 KLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNA 307
Query: 287 IIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACS-----------HAGLIEDG 335
+ + G EAL FN M G +PD +S A+++CS H ++ +G
Sbjct: 308 MASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNG 367
Query: 336 LRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACR 395
+D + ++D+Y + R + A + + M K V S++A
Sbjct: 368 FESWDNI------------CNALIDMYMKCHRQDTAFRIFDRMSNK-TVVTWNSIVAGYV 414
Query: 396 TKGDI 400
G++
Sbjct: 415 ENGEV 419
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 115/262 (43%), Gaps = 46/262 (17%)
Query: 220 SVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIE---FARQVFQRM 276
S L C + L + HR + KQ ++V L+ G E FA++VF+
Sbjct: 37 SSLKNCKTIDELKM---FHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENS 93
Query: 277 HKR-TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHA------ 329
T +NS+I G+A +G EA+ F M G PD +F L+AC+ +
Sbjct: 94 ESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNG 153
Query: 330 ----GLI-----------EDGLRYF-------DIMKKIY-RVSPR-IEHYGCIVDLYSRA 365
GLI ++ L +F D +K++ +S R + + ++ Y+R
Sbjct: 154 IQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARR 213
Query: 366 GRLEDALNV----VENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNY 421
+DA+++ V + + PN V + +++AC D+ E++ ++ + G++ N
Sbjct: 214 DFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFI--RNSGIEVND 271
Query: 422 VL---LANMYAAVGKWDGAGKI 440
++ L +MY D A ++
Sbjct: 272 LMVSALVDMYMKCNAIDVAKRL 293
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 340 bits (871), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 172/455 (37%), Positives = 270/455 (59%), Gaps = 4/455 (0%)
Query: 46 VQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIH 105
V W S I+ + G +A F +M +H+T + +LS CA + L G +
Sbjct: 198 VSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRN--LEFGRQVC 255
Query: 106 GLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDI 165
+ + ++ N + + A+LDMY K G ++ A +FDAM K + TW M+DGY D
Sbjct: 256 SYIEENRVNVN-LTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDY 314
Query: 166 ESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQIS-GVEPDYVTIISVLNA 224
E+A + + MP +D ++W AL++ + + G EAL F E+Q+ ++ + +T++S L+A
Sbjct: 315 EAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSA 374
Query: 225 CANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSW 284
CA VG L +G WIH Y+ K + N V + LI +YS+CG +E +R+VF + KR + W
Sbjct: 375 CAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVW 434
Query: 285 NSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKK 344
+++I G A++G EA++ F MQ+ KP+GV+FT ACSH GL+++ F M+
Sbjct: 435 SAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMES 494
Query: 345 IYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAE 404
Y + P +HY CIVD+ R+G LE A+ +E MP+ P+ V G+LL AC+ ++ LAE
Sbjct: 495 NYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAE 554
Query: 405 RLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGI 464
L++L+P D +VLL+N+YA +GKW+ ++R+ M+ G++K+PG SSIEI I
Sbjct: 555 MACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMI 614
Query: 465 HEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPE 499
HEF++GD +H SE +Y L + LK GY PE
Sbjct: 615 HEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPE 649
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 108/430 (25%), Positives = 190/430 (44%), Gaps = 72/430 (16%)
Query: 5 ATATILPQPFLPHQQNPNQNLTTTPQISIQTNNSKSTVNPTV---QWTSSISRHCRSGRI 61
+TA L P P+ NPNQ P + + + S + V Q + R+G
Sbjct: 5 STAQPLSLPRHPNFSNPNQ-----PTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTF 59
Query: 62 AE----------------AALEFTRMTLHGT-NPNHITFITLLSGCADFPSQCLFLGA-- 102
++ A+LE+ R PN + TL+ A P L + A
Sbjct: 60 SDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFL 119
Query: 103 -MIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSS-----FTWNAMI 156
M+ C N L+ A+ + L + M VKS+ F N++I
Sbjct: 120 DMVSESQC-----YPNKYTFPFLIKAAAEVSSLSLGQSL-HGMAVKSAVGSDVFVANSLI 173
Query: 157 DGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYV 216
Y GD++SA ++F + +D +SW +++NGFV++G ++ALE F++M+ V+ +V
Sbjct: 174 HCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHV 233
Query: 217 TIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCI---------- 266
T++ VL+ACA + L G + Y+ + N+ + N ++D+Y++CG I
Sbjct: 234 TMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAM 293
Query: 267 ---------------------EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFN 305
E AR+V M ++ +V+WN++I + NG EAL F+
Sbjct: 294 EEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFH 353
Query: 306 SMQ-KEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSR 364
+Q ++ K + ++ L+AC+ G +E G R+ K + + ++ +YS+
Sbjct: 354 ELQLQKNMKLNQITLVSTLSACAQVGALELG-RWIHSYIKKHGIRMNFHVTSALIHMYSK 412
Query: 365 AGRLEDALNV 374
G LE + V
Sbjct: 413 CGDLEKSREV 422
>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3
SV=1
Length = 544
Score = 337 bits (865), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 172/452 (38%), Positives = 273/452 (60%), Gaps = 8/452 (1%)
Query: 43 NPTVQ-WTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLG 101
NP V +T+ I SGR A+ + RM + P++ ++L C L +
Sbjct: 89 NPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKACD------LKVC 142
Query: 102 AMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMR 161
IH V KLG + VG ++++Y K G + A +FD M + MI+ Y
Sbjct: 143 REIHAQVLKLGFGSSR-SVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSE 201
Query: 162 RGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISV 221
G I+ A+ +F ++ ++D + WTA+++G V+ +ALE FREMQ+ V + T + V
Sbjct: 202 CGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCV 261
Query: 222 LNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTL 281
L+AC+++G L +G W+H +V Q + + V N LI++YSRCG I AR+VF+ M + +
Sbjct: 262 LSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDV 321
Query: 282 VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDI 341
+S+N++I G A++G EA+ F M GF+P+ V+ L ACSH GL++ GL F+
Sbjct: 322 ISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNS 381
Query: 342 MKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDII 401
MK+++ V P+IEHYGCIVDL R GRLE+A +EN+P++P+ ++LG+LL+AC+ G++
Sbjct: 382 MKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNME 441
Query: 402 LAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIG 461
L E++ K L + + YVLL+N+YA+ GKW + +IR +M+ GI+K+PG S+IE+
Sbjct: 442 LGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTIEVD 501
Query: 462 SGIHEFMAGDRSHIESEHIYSMLELLSFDLKL 493
+ IHEF+ GD +H E IY L+ L+ L+
Sbjct: 502 NQIHEFLVGDIAHPHKEAIYQRLQELNRILRF 533
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 87/370 (23%), Positives = 148/370 (40%), Gaps = 88/370 (23%)
Query: 137 ATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYF 196
A VVF+ +RV S+ ++ A +F + + +TA+++GFV G
Sbjct: 61 AFVVFELIRVCSTLD------------SVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRS 108
Query: 197 EEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDF---------- 246
+ + + M + V PD I SVL AC L + IH VLK F
Sbjct: 109 ADGVSLYHRMIHNSVLPDNYVITSVLKAC----DLKVCREIHAQVLKLGFGSSRSVGLKM 164
Query: 247 ----------------------KDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSW 284
+D+V +I+ YS CG I+ A ++FQ + + V W
Sbjct: 165 MEIYGKSGELVNAKKMFDEMPDRDHV-AATVMINCYSECGFIKEALELFQDVKIKDTVCW 223
Query: 285 NSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKK 344
++I G N + +ALE F MQ E + + L+ACS G +E G R+ +
Sbjct: 224 TAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALELG-RWVHSFVE 282
Query: 345 IYRVSPRIEHYGCIVDLYSRAGRLEDALNVVE---------------------------- 376
R+ ++++YSR G + +A V
Sbjct: 283 NQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAIN 342
Query: 377 ------NMPMKPNEVVLGSLLAACRTKGDIILAERL---MKYLVDLDPGVDSNYVLLANM 427
N +PN+V L +LL AC G + + + MK + +++P ++ +Y + ++
Sbjct: 343 EFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIE-HYGCIVDL 401
Query: 428 YAAVGKWDGA 437
VG+ + A
Sbjct: 402 LGRVGRLEEA 411
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/295 (21%), Positives = 116/295 (39%), Gaps = 66/295 (22%)
Query: 217 TIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRM 276
T+ISVL +C N+ + IH +++ + V LI + S +++A VF +
Sbjct: 31 TLISVLRSCKNIAHVP---SIHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSYV 87
Query: 277 HKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACS-------HA 329
+ + ++I GF +G + + ++ M PD T L AC HA
Sbjct: 88 SNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKACDLKVCREIHA 147
Query: 330 GLIE--------DGLRYFDI---------MKKIYRVSPRIEHYGC--IVDLYSRAGRLED 370
+++ GL+ +I KK++ P +H +++ YS G +++
Sbjct: 148 QVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECGFIKE 207
Query: 371 ALNVVENMPMK----------------------------------PNEVVLGSLLAACRT 396
AL + +++ +K NE +L+AC
Sbjct: 208 ALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSACSD 267
Query: 397 KGDIILAERLMKYLVDLDPGVDSNYV--LLANMYAAVGKWDGAGKIRRTMKGRGI 449
G + L R + V+ SN+V L NMY+ G + A ++ R M+ + +
Sbjct: 268 LGALELG-RWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDV 321
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 337 bits (864), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 168/459 (36%), Positives = 270/459 (58%), Gaps = 11/459 (2%)
Query: 45 TVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMI 104
V W + I R+CR G + EA F M P+ + ++S C G M
Sbjct: 177 VVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGR-------TGNMR 229
Query: 105 HGLVCKLGLDRNNVMVGT----ALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYM 160
+ L N+V + T AL+ MYA G MD+A F M V++ F AM+ GY
Sbjct: 230 YNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYS 289
Query: 161 RRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIIS 220
+ G ++ A +FD+ +D + WT +++ +V+ Y +EAL F EM SG++PD V++ S
Sbjct: 290 KCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFS 349
Query: 221 VLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRT 280
V++ACAN+G L W+H + + + + N LI++Y++CG ++ R VF++M +R
Sbjct: 350 VISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRN 409
Query: 281 LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFD 340
+VSW+S+I +++G +AL F M++E +P+ V+F G L CSH+GL+E+G + F
Sbjct: 410 VVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFA 469
Query: 341 IMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDI 400
M Y ++P++EHYGC+VDL+ RA L +AL V+E+MP+ N V+ GSL++ACR G++
Sbjct: 470 SMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGEL 529
Query: 401 ILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEI 460
L + K +++L+P D VL++N+YA +W+ IRR M+ + + K+ GLS I+
Sbjct: 530 ELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQ 589
Query: 461 GSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPE 499
HEF+ GD+ H +S IY+ L+ + LKL GYVP+
Sbjct: 590 NGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPD 628
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/374 (23%), Positives = 162/374 (43%), Gaps = 67/374 (17%)
Query: 57 RSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRN 116
RS L + R+ G + +F+ +L + + LF G +HG+ K+
Sbjct: 88 RSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSA--LFEGMELHGVAFKIA-TLC 144
Query: 117 NVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMP 176
+ V T +DMYA GR++ A VFD M + TWN MI+ Y R G ++ A ++F+
Sbjct: 145 DPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFE--- 201
Query: 177 VRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLW 236
EM+ S V PD + + ++++AC G +
Sbjct: 202 ----------------------------EMKDSNVMPDEMILCNIVSACGRTGNMRYNRA 233
Query: 237 IHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRM-------------------- 276
I+ ++++ D + + + L+ +Y+ GC++ AR+ F++M
Sbjct: 234 IYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGR 293
Query: 277 -----------HKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTA 325
K+ LV W ++I + + + EAL F M G KPD VS ++A
Sbjct: 294 LDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISA 353
Query: 326 CSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEV 385
C++ G++ D ++ + + + ++++Y++ G L+ +V E MP + N V
Sbjct: 354 CANLGIL-DKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRR-NVV 411
Query: 386 VLGSLLAACRTKGD 399
S++ A G+
Sbjct: 412 SWSSMINALSMHGE 425
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 336 bits (861), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 173/450 (38%), Positives = 269/450 (59%), Gaps = 17/450 (3%)
Query: 65 ALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTAL 124
L + M+ PN TF ++L CA + + G IHGL K G + V + L
Sbjct: 113 TLFYEMMSDEFVEPNRFTFPSVLKACA--KTGKIQEGKQIHGLALKYGFG-GDEFVMSNL 169
Query: 125 LDMYAKFGRMDLATVVFDAMRVKSSFT--------------WNAMIDGYMRRGDIESAVR 170
+ MY G M A V+F ++ WN MIDGYMR GD ++A
Sbjct: 170 VRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARM 229
Query: 171 MFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGT 230
+FD+M R +SW +++G+ G+F++A+E FREM+ + P+YVT++SVL A + +G+
Sbjct: 230 LFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGS 289
Query: 231 LGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVG 290
L +G W+H Y + + + + LID+YS+CG IE A VF+R+ + +++W+++I G
Sbjct: 290 LELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMING 349
Query: 291 FAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP 350
FA++G G+A++ F M++ G +P V++ LTACSH GL+E+G RYF M + + P
Sbjct: 350 FAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEP 409
Query: 351 RIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYL 410
RIEHYGC+VDL R+G L++A + NMP+KP++V+ +LL ACR +G++ + +R+ L
Sbjct: 410 RIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANIL 469
Query: 411 VDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEFMAG 470
+D+ P YV L+NMYA+ G W ++R MK + I+K PG S I+I +HEF+
Sbjct: 470 MDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVE 529
Query: 471 DRSHIESEHIYSMLELLSFDLKLCGYVPET 500
D SH +++ I SML +S L+L GY P T
Sbjct: 530 DDSHPKAKEINSMLVEISDKLRLAGYRPIT 559
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 123/275 (44%), Gaps = 71/275 (25%)
Query: 164 DIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEE--ALECFREMQISG-VEPDYVTIIS 220
D++ A ++F++MP R+ SW ++ GF + + A+ F EM VEP+ T S
Sbjct: 74 DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPS 133
Query: 221 VLNACANVGTLGIGLWIHRYVLKQDF--------------------KD------------ 248
VL ACA G + G IH LK F KD
Sbjct: 134 VLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEK 193
Query: 249 -------------NVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNG 295
+ + N +ID Y R G + AR +F +M +R++VSWN++I G+++NG
Sbjct: 194 DMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNG 253
Query: 296 FVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIE-----------DGLRYFDIMKK 344
F +A+E F M+K +P+ V+ L A S G +E G+R D++
Sbjct: 254 FFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLG- 312
Query: 345 IYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMP 379
++D+YS+ G +E A++V E +P
Sbjct: 313 -----------SALIDMYSKCGIIEKAIHVFERLP 336
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/299 (24%), Positives = 125/299 (41%), Gaps = 69/299 (23%)
Query: 45 TVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMI 104
V W + IS + +G +A F M PN++T +++L + S L LG +
Sbjct: 239 VVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGS--LELGEWL 296
Query: 105 HGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGD 164
H G+ ++V+ G+AL+DMY+K G ++ A VF+ + ++ TW+AMI
Sbjct: 297 HLYAEDSGIRIDDVL-GSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMI-------- 347
Query: 165 IESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNA 224
NGF G +A++CF +M+ +GV P V I++L A
Sbjct: 348 -----------------------NGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTA 384
Query: 225 CANVGTLGIG-LWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVS 283
C++ G + G + + V + ++ ++DL R
Sbjct: 385 CSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGR--------------------- 423
Query: 284 WNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIM 342
+G + EA E+ +M KPD V + L AC G +E G R +I+
Sbjct: 424 ----------SGLLDEAEEFILNMP---IKPDDVIWKALLGACRMQGNVEMGKRVANIL 469
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 331 bits (849), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 168/455 (36%), Positives = 270/455 (59%), Gaps = 7/455 (1%)
Query: 49 TSSISRHCRSGRIAEAALEFTRMTLHGTN---PNHITFITLLSGCADFPSQCLFLGAMIH 105
S I HC+S + E + +F R L N P++ T L+ C + G +H
Sbjct: 75 NSMIRAHCKSP-VPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMR--ETGLQVH 131
Query: 106 GLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDI 165
G+ + G D N+ V T L+ +YA+ G +D VF+++ AM+ R GD+
Sbjct: 132 GMTIRRGFD-NDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDV 190
Query: 166 ESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNAC 225
A ++F+ MP RD I+W A+++G+ + G EAL F MQ+ GV+ + V +ISVL+AC
Sbjct: 191 VFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSAC 250
Query: 226 ANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWN 285
+G L G W H Y+ + K V++ TL+DLY++CG +E A +VF M ++ + +W+
Sbjct: 251 TQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWS 310
Query: 286 SIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKI 345
S + G A+NGF + LE F+ M+++G P+ V+F L CS G +++G R+FD M+
Sbjct: 311 SALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNE 370
Query: 346 YRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAER 405
+ + P++EHYGC+VDLY+RAGRLEDA+++++ MPMKP+ V SLL A R ++ L
Sbjct: 371 FGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVL 430
Query: 406 LMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIH 465
K +++L+ YVLL+N+YA WD +R++MK +G++K+PG S +E+ +H
Sbjct: 431 ASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVH 490
Query: 466 EFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPET 500
EF GD+SH + I ++ + +S L+L GY +T
Sbjct: 491 EFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADT 525
Score = 39.7 bits (91), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 46/149 (30%)
Query: 48 WTSSISRHCRSGRIAEAALE-FTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHG 106
W+S+++ +G E LE F+ M G PN +TF+++L GC
Sbjct: 309 WSSALNGLAMNG-FGEKCLELFSLMKQDGVTPNAVTFVSVLRGC---------------- 351
Query: 107 LVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFT-----WNAMIDGYMR 161
+ G +D FD+MR + + ++D Y R
Sbjct: 352 ----------------------SVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYAR 389
Query: 162 RGDIESAVRMFDEMPVR-DAISWTALLNG 189
G +E AV + +MP++ A W++LL+
Sbjct: 390 AGRLEDAVSIIQQMPMKPHAAVWSSLLHA 418
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 328 bits (842), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 152/374 (40%), Positives = 243/374 (64%), Gaps = 2/374 (0%)
Query: 113 LDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMF 172
+ + +++ +LD YA+ M A +F+ M +++ +W+ M+ GY + GD+E A MF
Sbjct: 211 MPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMF 270
Query: 173 DEMPV--RDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGT 230
D+MP+ ++ ++WT ++ G+ ++G +EA +M SG++ D +IS+L AC G
Sbjct: 271 DKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGL 330
Query: 231 LGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVG 290
L +G+ IH + + + N V N L+D+Y++CG ++ A VF + K+ LVSWN+++ G
Sbjct: 331 LSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHG 390
Query: 291 FAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP 350
V+G EA+E F+ M++EG +PD V+F L +C+HAGLI++G+ YF M+K+Y + P
Sbjct: 391 LGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVP 450
Query: 351 RIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYL 410
++EHYGC+VDL R GRL++A+ VV+ MPM+PN V+ G+LL ACR ++ +A+ ++ L
Sbjct: 451 QVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNL 510
Query: 411 VDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEFMAG 470
V LDP NY LL+N+YAA W+G IR MK G++K G SS+E+ GIHEF
Sbjct: 511 VKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGIHEFTVF 570
Query: 471 DRSHIESEHIYSML 484
D+SH +S+ IY ML
Sbjct: 571 DKSHPKSDQIYQML 584
Score = 142 bits (357), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 121/479 (25%), Positives = 215/479 (44%), Gaps = 96/479 (20%)
Query: 18 QQNPNQNLTTTPQI------SIQTNNSKSTVN----PTVQWTSSISR-HCRSGRIAEAAL 66
++N +++L P++ QTN + N P V +S+ R H ++ + +A
Sbjct: 44 RRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFF 103
Query: 67 EFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLD 126
F+ M G ++ T+ LL C+ L + M+H + KLGL +++ V AL+D
Sbjct: 104 VFSEMQRFGLFADNFTYPFLLKACSG--QSWLPVVKMMHNHIEKLGLS-SDIYVPNALID 160
Query: 127 MYAKFGRMDL--ATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWT 184
Y++ G + + A +F+ M + + +WN+M+ G ++ G++ A R+FDEMP RD ISW
Sbjct: 161 CYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWN 220
Query: 185 ALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQ 244
+L+G+ + +A E F +M P+ T+ W
Sbjct: 221 TMLDGYARCREMSKAFELFEKM------PERNTVS----------------W-------- 250
Query: 245 DFKDNVKVCNTLIDLYSRCGCIEFARQVFQRM--HKRTLVSWNSIIVGFAVNGFVGEALE 302
+T++ YS+ G +E AR +F +M + +V+W II G+A G + EA
Sbjct: 251 ---------STMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADR 301
Query: 303 YFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLY 362
+ M G K D + L AC+ +GL+ G+R I+K+ + ++D+Y
Sbjct: 302 LVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKR-SNLGSNAYVLNALLDMY 360
Query: 363 SRAGRLEDALNVVENMPMK----------------------------------PNEVVLG 388
++ G L+ A +V ++P K P++V
Sbjct: 361 AKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFI 420
Query: 389 SLLAACRTKGDI---ILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTM 444
++L +C G I I M+ + DL P V+ +Y L ++ VG+ A K+ +TM
Sbjct: 421 AVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVE-HYGCLVDLLGRVGRLKEAIKVVQTM 478
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 103/252 (40%), Gaps = 45/252 (17%)
Query: 171 MFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGT 230
M +PVR A SW + R FEE L+ L CAN+
Sbjct: 1 MTSSLPVR-APSWVS------SRRIFEERLQ-------------------DLPKCANLNQ 34
Query: 231 LGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVG 290
+ +H +++++ +++ + LI S C A +VF ++ + + NS+I
Sbjct: 35 VK---QLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLCNSLIRA 91
Query: 291 FAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYR--- 347
A N +A F+ MQ+ G D ++ L ACS G + ++K ++
Sbjct: 92 HAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACS-------GQSWLPVVKMMHNHIE 144
Query: 348 ---VSPRIEHYGCIVDLYSRAGRL--EDALNVVENMPMKPNEVVLGSLLAACRTKGDIIL 402
+S I ++D YSR G L DA+ + E M + + V S+L G++
Sbjct: 145 KLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSER-DTVSWNSMLGGLVKAGELRD 203
Query: 403 AERLMKYLVDLD 414
A RL + D
Sbjct: 204 ARRLFDEMPQRD 215
>sp|Q9C501|PPR70_ARATH Pentatricopeptide repeat-containing protein At1g33350
OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1
Length = 538
Score = 326 bits (835), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 177/450 (39%), Positives = 262/450 (58%), Gaps = 17/450 (3%)
Query: 48 WTSSISRHCRSGRIAEAALEFTRMTLHGT--NPNHITFITLLSGCADFPSQCLFLGAMIH 105
++SS+ H A +A F R+ ++ + PNH + +L S F ++H
Sbjct: 98 YSSSLPLH------ASSAFSFFRLMVNRSVPRPNHFIYPLVLKSTPYLSSA--FSTPLVH 149
Query: 106 GLVCKLGLDRNNVMVGTALLDMYAK-FGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGD 164
+ K G V+V TALL YA + LA +FD M ++ +W AM+ GY R GD
Sbjct: 150 THLFKSGFHLY-VVVQTALLHSYASSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGD 208
Query: 165 IESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREM-QISGVEPDYVTIISVLN 223
I +AV +F++MP RD SW A+L + G F EA+ FR M + P+ VT++ VL+
Sbjct: 209 ISNAVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLFRRMINEPSIRPNEVTVVCVLS 268
Query: 224 ACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVS 283
ACA GTL + IH + ++D +V V N+L+DLY +CG +E A VF+ K++L +
Sbjct: 269 ACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEASSVFKMASKKSLTA 328
Query: 284 WNSIIVGFAVNGFVGEALEYFNSMQK---EGFKPDGVSFTGALTACSHAGLIEDGLRYFD 340
WNS+I FA++G EA+ F M K KPD ++F G L AC+H GL+ G YFD
Sbjct: 329 WNSMINCFALHGRSEEAIAVFEEMMKLNINDIKPDHITFIGLLNACTHGGLVSKGRGYFD 388
Query: 341 IMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDI 400
+M + + PRIEHYGC++DL RAGR ++AL V+ M MK +E + GSLL AC+ G +
Sbjct: 389 LMTNRFGIEPRIEHYGCLIDLLGRAGRFDEALEVMSTMKMKADEAIWGSLLNACKIHGHL 448
Query: 401 ILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEI 460
LAE +K LV L+P ++AN+Y +G W+ A + R+ +K + K PG S IEI
Sbjct: 449 DLAEVAVKNLVALNPNNGGYVAMMANLYGEMGNWEEARRARKMIKHQNAYKPPGWSRIEI 508
Query: 461 GSGIHEFMAGDRSHIESEHIYSMLE-LLSF 489
+ +H+F + D+SH E+E IY +L+ L+SF
Sbjct: 509 DNEVHQFYSLDKSHPETEEIYMILDSLISF 538
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 118/288 (40%), Gaps = 73/288 (25%)
Query: 46 VQWTSSISRHCRSGRIAEAALEFTRM---------------TLHG--------------- 75
V WT+ +S + RSG I+ A F M T +G
Sbjct: 194 VSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLFRRMINE 253
Query: 76 --TNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGR 133
PN +T + +LS CA + L L IH + L ++V V +L+D+Y K G
Sbjct: 254 PSIRPNEVTVVCVLSACAQ--TGTLQLAKGIHAFAYRRDLS-SDVFVSNSLVDLYGKCGN 310
Query: 134 MDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKR 193
++ A+ VF KS WN+MI+ + G E A+ +F+EM
Sbjct: 311 LEEASSVFKMASKKSLTAWNSMINCFALHGRSEEAIAVFEEM------------------ 352
Query: 194 GYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIG-----LWIHRYVLKQDFKD 248
++ I+ ++PD++T I +LNAC + G + G L +R+ +
Sbjct: 353 ----------MKLNINDIKPDHITFIGLLNACTHGGLVSKGRGYFDLMTNRF----GIEP 398
Query: 249 NVKVCNTLIDLYSRCGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNG 295
++ LIDL R G + A +V M K W S++ ++G
Sbjct: 399 RIEHYGCLIDLLGRAGRFDEALEVMSTMKMKADEAIWGSLLNACKIHG 446
>sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510
OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1
Length = 511
Score = 325 bits (834), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 158/375 (42%), Positives = 242/375 (64%), Gaps = 3/375 (0%)
Query: 122 TALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAI 181
T L+ YAK G + A VFD M + WNAMI GY RRGD+++A+ +FD MP ++
Sbjct: 121 TTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMPRKNVT 180
Query: 182 SWTALLNGFVKRGYFEEALECFREMQI-SGVEPDYVTIISVLNACANVGTLGIGLWIHRY 240
SWT +++GF + G + EAL+ F M+ V+P+++T++SVL ACAN+G L IG + Y
Sbjct: 181 SWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGY 240
Query: 241 VLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNGFVGE 299
+ F DN+ VCN I++YS+CG I+ A+++F+ + ++R L SWNS+I A +G E
Sbjct: 241 ARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDE 300
Query: 300 ALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIV 359
AL F M +EG KPD V+F G L AC H G++ G F M++++++SP++EHYGC++
Sbjct: 301 ALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCMI 360
Query: 360 DLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDS 419
DL R G+L++A ++++ MPMKP+ VV G+LL AC G++ +AE + L L+P
Sbjct: 361 DLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHGNVEIAEIASEALFKLEPTNPG 420
Query: 420 NYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSS-IEIGSGIHEFMAGDRSHIESE 478
N V+++N+YAA KWDG ++R+ MK + K G S +E+G +H+F D+SH S
Sbjct: 421 NCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYSYFVEVGVDVHKFTVEDKSHPRSY 480
Query: 479 HIYSMLELLSFDLKL 493
IY +LE + +KL
Sbjct: 481 EIYQVLEEIFRRMKL 495
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 114/275 (41%), Gaps = 39/275 (14%)
Query: 168 AVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACAN 227
A ++FD + L+ + E++ + + G+ P + T + A A+
Sbjct: 35 ARKLFDHHQNSCTFLYNKLIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASAS 94
Query: 228 VGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSI 287
+ +H + F+ + C TLI Y++ G + AR+VF M KR + WN++
Sbjct: 95 FSSARPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAM 154
Query: 288 IVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYR 347
I G+ G + A+E F+SM ++ S+T ++ S G + L+ F M+K
Sbjct: 155 ITGYQRRGDMKAAMELFDSMPRKNV----TSWTTVISGFSQNGNYSEALKMFLCMEK--- 207
Query: 348 VSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLM 407
+ +KPN + + S+L AC G++ + RL
Sbjct: 208 -----------------------------DKSVKPNHITVVSVLPACANLGELEIGRRLE 238
Query: 408 KYLVDLDPGVDSNYVLLAN--MYAAVGKWDGAGKI 440
Y + + D+ YV A MY+ G D A ++
Sbjct: 239 GYARE-NGFFDNIYVCNATIEMYSKCGMIDVAKRL 272
Score = 35.4 bits (80), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 55/153 (35%), Gaps = 34/153 (22%)
Query: 48 WTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGL 107
W S I G+ EA F +M G P+ +TF+ LL C +HG
Sbjct: 285 WNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLAC-------------VHG- 330
Query: 108 VCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIES 167
V+ G L F M+ + + + MID R G ++
Sbjct: 331 --------GMVVKGQEL------FKSMEEVHKISPKLE-----HYGCMIDLLGRVGKLQE 371
Query: 168 AVRMFDEMPVR-DAISWTALLNGFVKRGYFEEA 199
A + MP++ DA+ W LL G E A
Sbjct: 372 AYDLIKTMPMKPDAVVWGTLLGACSFHGNVEIA 404
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 325 bits (832), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 151/351 (43%), Positives = 233/351 (66%), Gaps = 1/351 (0%)
Query: 150 FTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQIS 209
+ N+++ Y GD+ SA ++FD+MP +D ++W +++NGF + G EEAL + EM
Sbjct: 157 YVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSK 216
Query: 210 GVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFA 269
G++PD TI+S+L+ACA +G L +G +H Y++K N+ N L+DLY+RCG +E A
Sbjct: 217 GIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEA 276
Query: 270 RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQK-EGFKPDGVSFTGALTACSH 328
+ +F M + VSW S+IVG AVNGF EA+E F M+ EG P ++F G L ACSH
Sbjct: 277 KTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSH 336
Query: 329 AGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLG 388
G++++G YF M++ Y++ PRIEH+GC+VDL +RAG+++ A +++MPM+PN V+
Sbjct: 337 CGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWR 396
Query: 389 SLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448
+LL AC GD LAE ++ L+P +YVLL+NMYA+ +W KIR+ M G
Sbjct: 397 TLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDG 456
Query: 449 IQKKPGLSSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPE 499
++K PG S +E+G+ +HEF+ GD+SH +S+ IY+ L+ ++ L+ GYVP+
Sbjct: 457 VKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQ 507
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 126/238 (52%), Gaps = 4/238 (1%)
Query: 174 EMPVRDAISWTALLNGFVKRGYFEEALECFREMQISG-VEPDYVTIISVLNACANVGTLG 232
E P+ + W L+ G+ + G A +REM++SG VEPD T ++ A + +
Sbjct: 80 EKPI-NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVR 138
Query: 233 IGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFA 292
+G IH V++ F + V N+L+ LY+ CG + A +VF +M ++ LV+WNS+I GFA
Sbjct: 139 LGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFA 198
Query: 293 VNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRI 352
NG EAL + M +G KPDG + L+AC+ G + G R M K+ ++ +
Sbjct: 199 ENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKV-GLTRNL 257
Query: 353 EHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYL 410
++DLY+R GR+E+A + + M K N V SL+ G A L KY+
Sbjct: 258 HSSNVLLDLYARCGRVEEAKTLFDEMVDK-NSVSWTSLIVGLAVNGFGKEAIELFKYM 314
Score = 95.5 bits (236), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 123/254 (48%), Gaps = 39/254 (15%)
Query: 46 VQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIH 105
V W S I+ +G+ EA +T M G P+ T ++LLS CA + L LG +H
Sbjct: 188 VAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGA--LTLGKRVH 245
Query: 106 GLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDI 165
+ K+GL RN + LLD+YA+ GR++ A +FD M K+S +W
Sbjct: 246 VYMIKVGLTRN-LHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSW------------- 291
Query: 166 ESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQ-ISGVEPDYVTIISVLNA 224
T+L+ G G+ +EA+E F+ M+ G+ P +T + +L A
Sbjct: 292 ------------------TSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYA 333
Query: 225 CANVGTLGIGLWIHRYVLKQDFKDNVKVCN--TLIDLYSRCGCIEFARQVFQRM-HKRTL 281
C++ G + G R +++++K ++ + ++DL +R G ++ A + + M + +
Sbjct: 334 CSHCGMVKEGFEYFRR-MREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNV 392
Query: 282 VSWNSIIVGFAVNG 295
V W +++ V+G
Sbjct: 393 VIWRTLLGACTVHG 406
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 324 bits (830), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 166/457 (36%), Positives = 273/457 (59%), Gaps = 7/457 (1%)
Query: 46 VQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIH 105
V W +S RSG EA + F ++ G P+ +T ++L D S+ L +G +IH
Sbjct: 218 VSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGD--SEMLNMGRLIH 275
Query: 106 GLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDI 165
G V K GL ++ ++ +A++DMY K G + +F+ + + NA I G R G +
Sbjct: 276 GYVIKQGLLKDKCVI-SAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLV 334
Query: 166 ESAVRMFDEMPVR----DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISV 221
+ A+ MF+ + + +SWT+++ G + G EALE FREMQ++GV+P++VTI S+
Sbjct: 335 DKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSM 394
Query: 222 LNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTL 281
L AC N+ LG G H + ++ DNV V + LID+Y++CG I ++ VF M + L
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNL 454
Query: 282 VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDI 341
V WNS++ GF+++G E + F S+ + KPD +SFT L+AC GL ++G +YF +
Sbjct: 455 VCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKM 514
Query: 342 MKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDII 401
M + Y + PR+EHY C+V+L RAG+L++A ++++ MP +P+ V G+LL +CR + ++
Sbjct: 515 MSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVD 574
Query: 402 LAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIG 461
LAE + L L+P YVLL+N+YAA G W IR M+ G++K PG S I++
Sbjct: 575 LAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVK 634
Query: 462 SGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVP 498
+ ++ +AGD+SH + + I ++ +S +++ G+ P
Sbjct: 635 NRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRP 671
Score = 155 bits (391), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 116/393 (29%), Positives = 186/393 (47%), Gaps = 45/393 (11%)
Query: 39 KSTVNPTV-QWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQC 97
+S +PT+ ++S I ++ ++ F+RM HG P+ L CA+ +
Sbjct: 74 QSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSA-- 131
Query: 98 LFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMID 157
+G IH + C GLD + + G+ + MY + GRM A VFD M K T +A++
Sbjct: 132 FKVGKQIHCVSCVSGLDMDAFVQGS-MFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLC 190
Query: 158 GYMRRGDIESAVRMFDEMPVR----DAISWTALLNGFVKRGYFEEALECFREMQISGVEP 213
Y R+G +E VR+ EM + +SW +L+GF + GY +EA+ F+++ G P
Sbjct: 191 AYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCP 250
Query: 214 DYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLY------------- 260
D VT+ SVL + + L +G IH YV+KQ + V + +ID+Y
Sbjct: 251 DQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLF 310
Query: 261 ------------------SRCGCIEFARQVFQRMHKRTL----VSWNSIIVGFAVNGFVG 298
SR G ++ A ++F+ ++T+ VSW SII G A NG
Sbjct: 311 NQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDI 370
Query: 299 EALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCI 358
EALE F MQ G KP+ V+ L AC + + G +++ + + +
Sbjct: 371 EALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLD-NVHVGSAL 429
Query: 359 VDLYSRAGRLEDALNVVENMPMKPNEVVLGSLL 391
+D+Y++ GR+ + V MP K N V SL+
Sbjct: 430 IDMYAKCGRINLSQIVFNMMPTK-NLVCWNSLM 461
Score = 75.9 bits (185), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 83/362 (22%), Positives = 135/362 (37%), Gaps = 80/362 (22%)
Query: 155 MIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPD 214
+I Y A + +P S+++L+ K F +++ F M G+ PD
Sbjct: 56 LIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPD 115
Query: 215 YVTIISVLNACANVGTLGIGLWIH-------------------------------RYVLK 243
+ ++ CA + +G IH R V
Sbjct: 116 SHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFD 175
Query: 244 QDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH----KRTLVSWNSIIVGFAVNGFVGE 299
+ +V C+ L+ Y+R GC+E ++ M + +VSWN I+ GF +G+ E
Sbjct: 176 RMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKE 235
Query: 300 ALEYFNSMQKEGFKPDGVSFTGALTACS-----------HAGLIEDGLRYFDIMKKIYRV 348
A+ F + GF PD V+ + L + H +I+ GL +K +
Sbjct: 236 AVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGL-----LKDKCVI 290
Query: 349 SPRIEHYG------CIVDLY------------------SRAGRLEDALNVVE---NMPMK 381
S I+ YG I+ L+ SR G ++ AL + E M+
Sbjct: 291 SAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTME 350
Query: 382 PNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIR 441
N V S++A C G I A L + + GV N+V + +M A G G R
Sbjct: 351 LNVVSWTSIIAGCAQNGKDIEALELFREM--QVAGVKPNHVTIPSMLPACGNIAALGHGR 408
Query: 442 RT 443
T
Sbjct: 409 ST 410
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 18/192 (9%)
Query: 238 HRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFV 297
H +LK +++ + LI YS C A V Q + T+ S++S+I
Sbjct: 38 HARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLF 97
Query: 298 GEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP----RIE 353
+++ F+ M G PD C+ L F + K+I+ VS ++
Sbjct: 98 TQSIGVFSRMFSHGLIPDSHVLPNLFKVCAE-------LSAFKVGKQIHCVSCVSGLDMD 150
Query: 354 HY--GCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLV 411
+ G + +Y R GR+ DA V + M K + V +LL A KG + E +++ L
Sbjct: 151 AFVQGSMFHMYMRCGRMGDARKVFDRMSDK-DVVTCSALLCAYARKGCL---EEVVRILS 206
Query: 412 DLD-PGVDSNYV 422
+++ G+++N V
Sbjct: 207 EMESSGIEANIV 218
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 323 bits (827), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 167/449 (37%), Positives = 259/449 (57%), Gaps = 3/449 (0%)
Query: 39 KSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCL 98
+S V V W I+ + + G +A + M G P+ +T I L+S C+ L
Sbjct: 216 ESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGD--L 273
Query: 99 FLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDG 158
G + V + GL R + + AL+DM++K G + A +FD + ++ +W MI G
Sbjct: 274 NRGKEFYEYVKENGL-RMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISG 332
Query: 159 YMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTI 218
Y R G ++ + ++FD+M +D + W A++ G V+ ++AL F+EMQ S +PD +T+
Sbjct: 333 YARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITM 392
Query: 219 ISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK 278
I L+AC+ +G L +G+WIHRY+ K NV + +L+D+Y++CG I A VF +
Sbjct: 393 IHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQT 452
Query: 279 RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRY 338
R +++ +II G A++G A+ YFN M G PD ++F G L+AC H G+I+ G Y
Sbjct: 453 RNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDY 512
Query: 339 FDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKG 398
F MK + ++P+++HY +VDL RAG LE+A ++E+MPM+ + V G+LL CR G
Sbjct: 513 FSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHG 572
Query: 399 DIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSI 458
++ L E+ K L++LDP YVLL MY W+ A + RR M RG++K PG SSI
Sbjct: 573 NVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSI 632
Query: 459 EIGSGIHEFMAGDRSHIESEHIYSMLELL 487
E+ + EF+ D+S ESE IY L L
Sbjct: 633 EVNGIVCEFIVRDKSRPESEKIYDRLHCL 661
Score = 149 bits (377), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 110/409 (26%), Positives = 186/409 (45%), Gaps = 71/409 (17%)
Query: 39 KSTVNPTV-QWTSSISRHCRSGRIAEAALEFTRMTLHG---TNPNHITFITLLSGCADFP 94
K NP + W +I S E+ L + +M HG + P+H T+ L CAD
Sbjct: 111 KGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADL- 169
Query: 95 SQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNA 154
+ LG MI G V KL L+ + V A + M+A G M+ A VFD V+ +WN
Sbjct: 170 -RLSSLGHMILGHVLKLRLELVS-HVHNASIHMFASCGDMENARKVFDESPVRDLVSWNC 227
Query: 155 MIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPD 214
+I+GY + G+ E A+ + ++ M+ GV+PD
Sbjct: 228 LINGYKKIGEAEKAIYV-------------------------------YKLMESEGVKPD 256
Query: 215 YVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQ 274
VT+I ++++C+ +G L G + YV + + + + N L+D++S+CG I AR++F
Sbjct: 257 DVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFD 316
Query: 275 RMHKRTLVSWNSIIVGFAV----------------------NGFVG---------EALEY 303
+ KRT+VSW ++I G+A N +G +AL
Sbjct: 317 NLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALAL 376
Query: 304 FNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYS 363
F MQ KPD ++ L+ACS G ++ G+ ++K Y +S + +VD+Y+
Sbjct: 377 FQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEK-YSLSLNVALGTSLVDMYA 435
Query: 364 RAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVD 412
+ G + +AL+V + + N + +++ GD A ++D
Sbjct: 436 KCGNISEALSVFHGIQTR-NSLTYTAIIGGLALHGDASTAISYFNEMID 483
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 111/220 (50%), Gaps = 4/220 (1%)
Query: 165 IESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGV---EPDYVTIISV 221
++ +V++ + + SW + GF + +E+ +++M G PD+ T +
Sbjct: 103 LDYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVL 162
Query: 222 LNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTL 281
CA++ +G I +VLK + V N I +++ CG +E AR+VF R L
Sbjct: 163 FKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDL 222
Query: 282 VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDI 341
VSWN +I G+ G +A+ + M+ EG KPD V+ G +++CS G + G +++
Sbjct: 223 VSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEY 282
Query: 342 MKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMK 381
+K+ + I ++D++S+ G + +A + +N+ +
Sbjct: 283 VKE-NGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKR 321
>sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2
SV=1
Length = 559
Score = 322 bits (826), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 161/391 (41%), Positives = 251/391 (64%), Gaps = 1/391 (0%)
Query: 101 GAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYM 160
G +HG+V K GL+ ++ + T +L MY G + A +F M WN+MI G+
Sbjct: 145 GRQLHGMVIKEGLEDDSFIRNT-MLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFA 203
Query: 161 RRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIIS 220
+ G I+ A +FDEMP R+ +SW ++++GFV+ G F++AL+ FREMQ V+PD T++S
Sbjct: 204 KCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVS 263
Query: 221 VLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRT 280
+LNACA +G G WIH Y+++ F+ N V LID+Y +CGCIE VF+ K+
Sbjct: 264 LLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQ 323
Query: 281 LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFD 340
L WNS+I+G A NGF A++ F+ +++ G +PD VSF G LTAC+H+G + +F
Sbjct: 324 LSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFR 383
Query: 341 IMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDI 400
+MK+ Y + P I+HY +V++ AG LE+A +++NMP++ + V+ SLL+ACR G++
Sbjct: 384 LMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNV 443
Query: 401 ILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEI 460
+A+R K L LDP YVLL+N YA+ G ++ A + R MK R ++K+ G SSIE+
Sbjct: 444 EMAKRAAKCLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEV 503
Query: 461 GSGIHEFMAGDRSHIESEHIYSMLELLSFDL 491
+HEF++ +H +S IYS+L++L++D+
Sbjct: 504 DFEVHEFISCGGTHPKSAEIYSLLDILNWDV 534
Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 104/413 (25%), Positives = 159/413 (38%), Gaps = 107/413 (25%)
Query: 104 IHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRG 163
IH + K GL + V L A M+ A +VF + K+ F WN +I G+ R
Sbjct: 44 IHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVWNTIIRGFSRSS 103
Query: 164 DIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLN 223
E A+ +F +M V+P +T SV
Sbjct: 104 FPEMAISIFIDMLCSSP-----------------------------SVKPQRLTYPSVFK 134
Query: 224 ACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGC------------------ 265
A +G G +H V+K+ +D+ + NT++ +Y CGC
Sbjct: 135 AYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVA 194
Query: 266 -------------IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGF 312
I+ A+ +F M +R VSWNS+I GF NG +AL+ F MQ++
Sbjct: 195 WNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDV 254
Query: 313 KPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIV----DLYSRAGRL 368
KPDG + L AC++ G E G + Y V R E +V D+Y + G +
Sbjct: 255 KPDGFTMVSLLNACAYLGASEQGRWIHE-----YIVRNRFELNSIVVTALIDMYCKCGCI 309
Query: 369 EDALNVVENMPMK----------------------------------PNEVVLGSLLAAC 394
E+ LNV E P K P+ V +L AC
Sbjct: 310 EEGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTAC 369
Query: 395 RTKGDIILAE---RLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTM 444
G++ A+ RLMK ++P + +Y L+ N+ G + A + + M
Sbjct: 370 AHSGEVHRADEFFRLMKEKYMIEPSI-KHYTLMVNVLGGAGLLEEAEALIKNM 421
Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 134/308 (43%), Gaps = 51/308 (16%)
Query: 46 VQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGA--- 102
V W S IS R+GR +A F M P+ T ++LL+ CA +LGA
Sbjct: 224 VSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACA-------YLGASEQ 276
Query: 103 --MIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYM 160
IH + + + N+++V TAL+DMY K G ++ VF+ K WN+MI G
Sbjct: 277 GRWIHEYIVRNRFELNSIVV-TALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILG-- 333
Query: 161 RRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIIS 220
G+ E A++ F E++ SG+EPD V+ I
Sbjct: 334 -----------------------------LANNGFEERAMDLFSELERSGLEPDSVSFIG 364
Query: 221 VLNACANVGTLGIGLWIHRYVLKQDF--KDNVKVCNTLIDLYSRCGCIEFARQVFQRMH- 277
VL ACA+ G + R ++K+ + + ++K ++++ G +E A + + M
Sbjct: 365 VLTACAHSGEVHRADEFFR-LMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPV 423
Query: 278 KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALT-ACSHAGLIEDGL 336
+ V W+S++ G V A ++K PD L+ A + GL E+ +
Sbjct: 424 EEDTVIWSSLLSACRKIGNVEMAKRAAKCLKK--LDPDETCGYVLLSNAYASYGLFEEAV 481
Query: 337 RYFDIMKK 344
+MK+
Sbjct: 482 EQRLLMKE 489
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 321 bits (822), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 177/463 (38%), Positives = 262/463 (56%), Gaps = 37/463 (7%)
Query: 78 PNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLA 137
P+ +F ++ +F S L G +H K GL+ +++ VGT L+ MY G ++ A
Sbjct: 104 PDSFSFAFVIKAVENFRS--LRTGFQMHCQALKHGLE-SHLFVGTTLIGMYGGCGCVEFA 160
Query: 138 TVVFDAMR-------------------------------VKSSFTWNAMIDGYMRRGDIE 166
VFD M V++ +WN M+ GY++ G++E
Sbjct: 161 RKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELE 220
Query: 167 SAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACA 226
SA R+F EMP RD +SW+ ++ G G F E+ FRE+Q +G+ P+ V++ VL+AC+
Sbjct: 221 SAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACS 280
Query: 227 NVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH-KRTLVSWN 285
G+ G +H +V K + V V N LID+YSRCG + AR VF+ M KR +VSW
Sbjct: 281 QSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWT 340
Query: 286 SIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKI 345
S+I G A++G EA+ FN M G PDG+SF L ACSHAGLIE+G YF MK++
Sbjct: 341 SMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRV 400
Query: 346 YRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAER 405
Y + P IEHYGC+VDLY R+G+L+ A + + MP+ P +V +LL AC + G+I LAE+
Sbjct: 401 YHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQ 460
Query: 406 LMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIH 465
+ + L +LDP + VLL+N YA GKW IR++M + I+K S +E+G ++
Sbjct: 461 VKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMY 520
Query: 466 EFMAGDRSH-IESEHIYSMLELLSFDLKLCGYVPETVAGELYE 507
+F AG++ I+ E + E++ GY PE VA LY+
Sbjct: 521 KFTAGEKKKGIDIEAHEKLKEIILRLKDEAGYTPE-VASALYD 562
Score = 96.3 bits (238), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 115/239 (48%), Gaps = 12/239 (5%)
Query: 46 VQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIH 105
V W++ I +G E+ L F + G +PN ++ +LS C+ S G ++H
Sbjct: 235 VSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQ--SGSFEFGKILH 292
Query: 106 GLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSF-TWNAMIDGYMRRGD 164
G V K G V V AL+DMY++ G + +A +VF+ M+ K +W +MI G G
Sbjct: 293 GFVEKAGYSW-IVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQ 351
Query: 165 IESAVRMFDEMPVR----DAISWTALLNGFVKRGYFEEALECFREMQ-ISGVEPDYVTII 219
E AVR+F+EM D IS+ +LL+ G EE + F EM+ + +EP+
Sbjct: 352 GEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYG 411
Query: 220 SVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK 278
+++ G L + ++ + V TL+ S G IE A QV QR+++
Sbjct: 412 CMVDLYGRSGKLQKA---YDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNE 467
Score = 95.5 bits (236), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 131/329 (39%), Gaps = 49/329 (14%)
Query: 90 CADFPSQCLFLGAM--IHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVK 147
C + C L A+ IHGL K G+D ++ G +L A + DA+
Sbjct: 8 CLSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLIL---------HCAISISDAL--- 55
Query: 148 SSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQ 207
Y R R+ P DA + L+ G+ + ++ F EM
Sbjct: 56 ----------PYAR--------RLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMM 97
Query: 208 ISG-VEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCI 266
G V PD + V+ A N +L G +H LK + ++ V TLI +Y CGC+
Sbjct: 98 RKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCV 157
Query: 267 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTAC 326
EFAR+VF MH+ LV+WN++I V A E F+ M V G +
Sbjct: 158 EFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIK-- 215
Query: 327 SHAGLIEDGLRYFDIMKKIYRVSPR-----IEHYGCIVDLYSRAGRLEDALNVVENMPMK 381
AG +E R F M VS I H G + + L+ A M
Sbjct: 216 --AGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRA-------GMS 266
Query: 382 PNEVVLGSLLAACRTKGDIILAERLMKYL 410
PNEV L +L+AC G + L ++
Sbjct: 267 PNEVSLTGVLSACSQSGSFEFGKILHGFV 295
>sp|Q9SR01|PP212_ARATH Pentatricopeptide repeat-containing protein At3g04750,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E81 PE=2
SV=1
Length = 661
Score = 320 bits (819), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 172/443 (38%), Positives = 266/443 (60%), Gaps = 7/443 (1%)
Query: 55 HCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLG-L 113
+ + G EA + +M G P+ T ++LL C + LG +HG + + G +
Sbjct: 207 YAKQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSD--IRLGKGVHGWIERRGPV 264
Query: 114 DRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFD 173
+N+++ ALLDMY K LA FDAM+ K +WN M+ G++R GD+E+A +FD
Sbjct: 265 YSSNLILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFD 324
Query: 174 EMPVRDAISWTALLNGFVKRGYFEEAL-ECFREMQI-SGVEPDYVTIISVLNACANVGTL 231
+MP RD +SW +LL G+ K+G + + E F EM I V+PD VT++S+++ AN G L
Sbjct: 325 QMPKRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGEL 384
Query: 232 GIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGF 291
G W+H V++ K + + + LID+Y +CG IE A VF+ ++ + W S+I G
Sbjct: 385 SHGRWVHGLVIRLQLKGDAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGL 444
Query: 292 AVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR 351
A +G +AL+ F MQ+EG P+ V+ LTACSH+GL+E+GL F+ MK + P
Sbjct: 445 AFHGNGQQALQLFGRMQEEGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPE 504
Query: 352 IEHYGCIVDLYSRAGRLEDALNVVE-NMPMKPNEVVLGSLLAACRTKGDIILAERLMKYL 410
EHYG +VDL RAGR+E+A ++V+ MPM+P++ + GS+L+ACR DI AE + L
Sbjct: 505 TEHYGSLVDLLCRAGRVEEAKDIVQKKMPMRPSQSMWGSILSACRGGEDIETAELALTEL 564
Query: 411 VDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEFMAG 470
+ L+P + YVLL+N+YA VG+W + K R M+ RG++K G SS+ G+H F+A
Sbjct: 565 LKLEPEKEGGYVLLSNIYATVGRWGYSDKTREAMENRGVKKTAGYSSVVGVEGLHRFVAA 624
Query: 471 DR-SHIESEHIYSMLELLSFDLK 492
++ +H I +L+ L ++K
Sbjct: 625 EKQNHPRWTEIKRILQHLYNEMK 647
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 138/278 (49%), Gaps = 12/278 (4%)
Query: 77 NPNHITFITLLSGCADFPSQCLFL-GAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMD 135
NPN + T++S + ++C L +MI V DR + ++ ++
Sbjct: 97 NPNVFVYNTMISAVSSSKNECFGLYSSMIRHRVSP---DRQTFLYLMKASSFLSEVKQIH 153
Query: 136 LATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGY 195
+V + + ++ WN+++ YM G+ A ++F MP D S+ ++ G+ K+G+
Sbjct: 154 CHIIVSGCLSL-GNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGF 212
Query: 196 FEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQD--FKDNVKVC 253
EAL+ + +M G+EPD T++S+L C ++ + +G +H ++ ++ + N+ +
Sbjct: 213 SLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILS 272
Query: 254 NTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFK 313
N L+D+Y +C A++ F M K+ + SWN+++VGF G + A F+ M K
Sbjct: 273 NALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKR--- 329
Query: 314 PDGVSFTGALTACSHAGLIEDGLR-YFDIMKKIYRVSP 350
D VS+ L S G + +R F M + +V P
Sbjct: 330 -DLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKP 366
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 4/138 (2%)
Query: 40 STVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLF 99
+T WTS I+ G +A F RM G PN++T + +L+ C+
Sbjct: 429 ATEKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGVTPNNVTLLAVLTACSHSGLVEEG 488
Query: 100 LGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLAT-VVFDAMRVKSSFT-WNAMID 157
L H + K G D G+ L+D+ + GR++ A +V M ++ S + W +++
Sbjct: 489 LHVFNH-MKDKFGFDPETEHYGS-LVDLLCRAGRVEEAKDIVQKKMPMRPSQSMWGSILS 546
Query: 158 GYMRRGDIESAVRMFDEM 175
DIE+A E+
Sbjct: 547 ACRGGEDIETAELALTEL 564
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 318 bits (816), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 167/486 (34%), Positives = 258/486 (53%), Gaps = 40/486 (8%)
Query: 52 ISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKL 111
I + +G E F M P+H TF +L C+ S + +G IHG K+
Sbjct: 112 IRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACS--CSGTIVIGRKIHGSATKV 169
Query: 112 GLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVR- 170
GL + + VG L+ MY K G + A +V D M + +WN+++ GY + + A+
Sbjct: 170 GLS-STLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEV 228
Query: 171 ------------------------------------MFDEMPVRDAISWTALLNGFVKRG 194
MF +M + +SW ++ ++K
Sbjct: 229 CREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNA 288
Query: 195 YFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCN 254
EA+E + M+ G EPD V+I SVL AC + L +G IH Y+ ++ N+ + N
Sbjct: 289 MPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLEN 348
Query: 255 TLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKP 314
LID+Y++CGC+E AR VF+ M R +VSW ++I + +G +A+ F+ +Q G P
Sbjct: 349 ALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVP 408
Query: 315 DGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNV 374
D ++F L ACSHAGL+E+G F +M Y+++PR+EH C+VDL RAG++++A
Sbjct: 409 DSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRF 468
Query: 375 VENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKW 434
+++M M+PNE V G+LL ACR D + L L P YVLL+N+YA G+W
Sbjct: 469 IQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRW 528
Query: 435 DGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLC 494
+ IR MK +G++K PG S++E+ IH F+ GDRSH +S+ IY L++L +K
Sbjct: 529 EEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKEL 588
Query: 495 GYVPET 500
GYVP++
Sbjct: 589 GYVPDS 594
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/368 (27%), Positives = 169/368 (45%), Gaps = 16/368 (4%)
Query: 93 FPSQCLFLGAMIHGLVCKLGLDRNN----VMVGTALLDMYAKFG--RMDLATVVFDAMRV 146
FP F + + KL LD+ + V + +LD Y R + ++ + +R
Sbjct: 13 FPKFRKFQSRKVSSSLPKLELDQKSPQETVFLLGQVLDTYPDIRTLRTVHSRIILEDLRC 72
Query: 147 KSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREM 206
SS M Y D+ SA ++FDE+P R+ I ++ +V G++ E ++ F M
Sbjct: 73 NSSLGVKLM-RAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTM 131
Query: 207 QISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCI 266
V PD+ T VL AC+ GT+ IG IH K + V N L+ +Y +CG +
Sbjct: 132 CGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFL 191
Query: 267 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTAC 326
AR V M +R +VSWNS++VG+A N +ALE M+ D + L A
Sbjct: 192 SEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAV 251
Query: 327 SHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMP---MKPN 383
S+ E+ + D+ K+ + S + + ++ +Y + +A+ + M +P+
Sbjct: 252 SNT-TTENVMYVKDMFFKMGKKS--LVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPD 308
Query: 384 EVVLGSLLAACRTKGDIILAERLMKYL--VDLDPGVDSNYVLLANMYAAVGKWDGAGKIR 441
V + S+L AC + L +++ Y+ L P + L+ +MYA G + A +
Sbjct: 309 AVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALI-DMYAKCGCLEKARDVF 367
Query: 442 RTMKGRGI 449
MK R +
Sbjct: 368 ENMKSRDV 375
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/361 (23%), Positives = 144/361 (39%), Gaps = 75/361 (20%)
Query: 24 NLTTTPQISIQTNNSKSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITF 83
N TT + ++ K V W I + ++ EA ++RM G P+ ++
Sbjct: 253 NTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSI 312
Query: 84 ITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDA 143
++L C D + L LG IHG + + L N+++ AL+DMYAK G ++ A VF+
Sbjct: 313 TSVLPACGD--TSALSLGKKIHGYIERKKL-IPNLLLENALIDMYAKCGCLEKARDVFEN 369
Query: 144 MRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECF 203
M+ + +W AMI Y GF RG +A+ F
Sbjct: 370 MKSRDVVSWTAMISAY-----------------------------GFSGRGC--DAVALF 398
Query: 204 REMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRC 263
++Q SG+ PD + ++ L AC++ G L
Sbjct: 399 SKLQDSGLVPDSIAFVTTLAACSHAGLL-------------------------------- 426
Query: 264 GCIEFARQVFQRM--HKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTG 321
E R F+ M H + + + G G+ E + +Q +P+ +
Sbjct: 427 ---EEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGA 483
Query: 322 ALTACSHAGLIEDGLRYFDIMKKIYRVSPRIE-HYGCIVDLYSRAGRLEDALNVVENMPM 380
L AC + GL D K+++++P +Y + ++Y++AGR E+ N+ M
Sbjct: 484 LLGACRVHSDTDIGLLAAD---KLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKS 540
Query: 381 K 381
K
Sbjct: 541 K 541
Score = 41.2 bits (95), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 18/179 (10%)
Query: 46 VQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIH 105
V WT+ IS + SGR +A F+++ G P+ I F+T L+ C+ G +
Sbjct: 376 VSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACS-------HAGLLEE 428
Query: 106 GLVC-KLGLDRNNVMVG----TALLDMYAKFGRMDLATVVFDAMRVK-SSFTWNAMIDGY 159
G C KL D + ++D+ + G++ A M ++ + W A++
Sbjct: 429 GRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGAC 488
Query: 160 MRRGDIE----SAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPD 214
D + +A ++F P + + L N + K G +EE M+ G++ +
Sbjct: 489 RVHSDTDIGLLAADKLFQLAPEQSGY-YVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKN 546
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 318 bits (815), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 159/397 (40%), Positives = 250/397 (62%), Gaps = 3/397 (0%)
Query: 98 LFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMID 157
++ G IHG V G D ++V V T L+ MY G + A +FD M VK WNA++
Sbjct: 132 VWFGRQIHGQVVVFGFD-SSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLA 190
Query: 158 GYMRRGDIESAVRMFDEMP--VRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDY 215
GY + G+++ A + + MP VR+ +SWT +++G+ K G EA+E F+ M + VEPD
Sbjct: 191 GYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDE 250
Query: 216 VTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQR 275
VT+++VL+ACA++G+L +G I YV + V + N +ID+Y++ G I A VF+
Sbjct: 251 VTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFEC 310
Query: 276 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDG 335
+++R +V+W +II G A +G EAL FN M K G +P+ V+F L+ACSH G ++ G
Sbjct: 311 VNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLG 370
Query: 336 LRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACR 395
R F+ M+ Y + P IEHYGC++DL RAG+L +A V+++MP K N + GSLLAA
Sbjct: 371 KRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASN 430
Query: 396 TKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGL 455
D+ L ER + L+ L+P NY+LLAN+Y+ +G+WD + +R MKG G++K G
Sbjct: 431 VHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGE 490
Query: 456 SSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLK 492
SSIE+ + +++F++GD +H + E I+ +L+ + ++
Sbjct: 491 SSIEVENRVYKFISGDLTHPQVERIHEILQEMDLQIQ 527
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 116/255 (45%), Gaps = 36/255 (14%)
Query: 42 VNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLG 101
V V WT IS + +SGR +EA F RM + P+ +T + +LS CAD S L LG
Sbjct: 212 VRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGS--LELG 269
Query: 102 AMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMR 161
I V G++R V + A++DMYAK G + A VF+ + ++ TW +I G
Sbjct: 270 ERICSYVDHRGMNR-AVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAG--- 325
Query: 162 RGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISV 221
G+ EAL F M +GV P+ VT I++
Sbjct: 326 ----------------------------LATHGHGAEALAMFNRMVKAGVRPNDVTFIAI 357
Query: 222 LNACANVGTLGIGLWIHRYVL-KQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRM-HKR 279
L+AC++VG + +G + + K N++ +IDL R G + A +V + M K
Sbjct: 358 LSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKA 417
Query: 280 TLVSWNSIIVGFAVN 294
W S++ V+
Sbjct: 418 NAAIWGSLLAASNVH 432
Score = 82.4 bits (202), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 92/412 (22%), Positives = 158/412 (38%), Gaps = 119/412 (28%)
Query: 112 GLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRM 171
GL+R+N+ V ++ + G + A VF +++ N MI A+ +
Sbjct: 42 GLNRDNLNVAK-FIEACSNAGHLRYAYSVFTHQPCPNTYLHNTMI----------RALSL 90
Query: 172 FDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTL 231
DE P +I A+ +R++ +PD T VL V +
Sbjct: 91 LDE-PNAHSI-----------------AITVYRKLWALCAKPDTFTFPFVLKIAVRVSDV 132
Query: 232 GIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRM--------------- 276
G IH V+ F +V V LI +Y CG + AR++F M
Sbjct: 133 WFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGY 192
Query: 277 -------HKRTL-----------VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVS 318
R+L VSW +I G+A +G EA+E F M E +PD V+
Sbjct: 193 GKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVT 252
Query: 319 FTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYG---------CIVDLYSRAGRLE 369
L+AC+ G +E G R+ ++H G ++D+Y+++G +
Sbjct: 253 LLAVLSACADLGSLELG----------ERICSYVDHRGMNRAVSLNNAVIDMYAKSGNIT 302
Query: 370 DALNVVE----------------------------------NMPMKPNEVVLGSLLAACR 395
AL+V E ++PN+V ++L+AC
Sbjct: 303 KALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACS 362
Query: 396 TKGDIILAERL---MKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTM 444
G + L +RL M+ + P ++ +Y + ++ GK A ++ ++M
Sbjct: 363 HVGWVDLGKRLFNSMRSKYGIHPNIE-HYGCMIDLLGRAGKLREADEVIKSM 413
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 318 bits (814), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 174/451 (38%), Positives = 270/451 (59%), Gaps = 12/451 (2%)
Query: 68 FTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDM 127
+ RM H +P+ TF LL + P L LG H + GLD++ V T+LL+M
Sbjct: 50 YLRMRNHRVSPDFHTFPFLLPSFHN-PLH-LPLGQRTHAQILLFGLDKDP-FVRTSLLNM 106
Query: 128 YAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALL 187
Y+ G + A VFD K WN++++ Y + G I+ A ++FDEMP R+ ISW+ L+
Sbjct: 107 YSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLI 166
Query: 188 NGFVKRGYFEEALECFREMQISG-----VEPDYVTIISVLNACANVGTLGIGLWIHRYVL 242
NG+V G ++EAL+ FREMQ+ V P+ T+ +VL+AC +G L G W+H Y+
Sbjct: 167 NGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYID 226
Query: 243 KQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNGFVGEAL 301
K + ++ + LID+Y++CG +E A++VF + K+ + +++++I A+ G E
Sbjct: 227 KYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECF 286
Query: 302 EYFNSMQ-KEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVD 360
+ F+ M + P+ V+F G L AC H GLI +G YF +M + + ++P I+HYGC+VD
Sbjct: 287 QLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVD 346
Query: 361 LYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSN 420
LY R+G +++A + + +MPM+P+ ++ GSLL+ R GDI E +K L++LDP
Sbjct: 347 LYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGA 406
Query: 421 YVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEFMAGDRSHIESEHI 480
YVLL+N+YA G+W IR M+ +GI K PG S +E+ +HEF+ GD S ESE I
Sbjct: 407 YVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERI 466
Query: 481 YSMLELLSFDLKLCGYVPET--VAGELYEND 509
Y+ML+ + L+ GYV +T V +L E D
Sbjct: 467 YAMLDEIMQRLREAGYVTDTKEVLLDLNEKD 497
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 93/220 (42%), Gaps = 37/220 (16%)
Query: 200 LECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDL 259
+ + M+ V PD+ T +L + N L +G H +L + V +L+++
Sbjct: 47 ISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNM 106
Query: 260 YSRC-------------------------------GCIEFARQVFQRMHKRTLVSWNSII 288
YS C G I+ AR++F M +R ++SW+ +I
Sbjct: 107 YSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLI 166
Query: 289 VGFAVNGFVGEALEYFNSMQ----KEGF-KPDGVSFTGALTACSHAGLIEDGLRYFDIMK 343
G+ + G EAL+ F MQ E F +P+ + + L+AC G +E G +
Sbjct: 167 NGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYID 226
Query: 344 KIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPN 383
K Y V I ++D+Y++ G LE A V + K +
Sbjct: 227 K-YHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKD 265
>sp|Q9LXE8|PP386_ARATH Pentatricopeptide repeat-containing protein At5g15340,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2
SV=1
Length = 623
Score = 313 bits (803), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 165/463 (35%), Positives = 268/463 (57%), Gaps = 13/463 (2%)
Query: 46 VQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIH 105
V WT+ +S R G + + F M + ++ + L CA L H
Sbjct: 77 VDWTTLLSSFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLED--LGFAQQGH 134
Query: 106 GLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDI 165
G+ K+G+ +V V AL+DMY K G + +F+ + KS +W ++D ++ +
Sbjct: 135 GVAVKMGV-LTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGL 193
Query: 166 ESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQI-SGVEPDYVTIISVLNA 224
E +F EMP R+A++WT ++ G++ G+ E LE EM G ++VT+ S+L+A
Sbjct: 194 ERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSA 253
Query: 225 CANVGTLGIGLWIHRYVLKQDFK-------DNVKVCNTLIDLYSRCGCIEFARQVFQRMH 277
CA G L +G W+H Y LK++ D+V V L+D+Y++CG I+ + VF+ M
Sbjct: 254 CAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLMR 313
Query: 278 KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLR 337
KR +V+WN++ G A++G ++ F M +E KPD ++FT L+ACSH+G++++G R
Sbjct: 314 KRNVVTWNALFSGLAMHGKGRMVIDMFPQMIRE-VKPDDLTFTAVLSACSHSGIVDEGWR 372
Query: 338 YFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTK 397
F ++ Y + P+++HY C+VDL RAG +E+A ++ MP+ PNEVVLGSLL +C
Sbjct: 373 CFHSLR-FYGLEPKVDHYACMVDLLGRAGLIEEAEILMREMPVPPNEVVLGSLLGSCSVH 431
Query: 398 GDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSS 457
G + +AER+ + L+ + PG +L++NMY A G+ D A +R +++ RGI+K PGLSS
Sbjct: 432 GKVEIAERIKRELIQMSPGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGLSS 491
Query: 458 IEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPET 500
I + +H F +GDRSH ++ IY L + ++ GYVP+
Sbjct: 492 IYVNDSVHRFSSGDRSHPRTKEIYLKLNEVIERIRSAGYVPDV 534
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 313 bits (802), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 171/460 (37%), Positives = 261/460 (56%), Gaps = 11/460 (2%)
Query: 41 TVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFL 100
V V W + I+ + +SG+I EA F + T+ ++SG + +
Sbjct: 246 NVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDV----FTWTAMVSG---YIQNRMVE 298
Query: 101 GAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYM 160
A L K+ +RN V A+L Y + RM++A +FD M ++ TWN MI GY
Sbjct: 299 EA--RELFDKMP-ERNEV-SWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYA 354
Query: 161 RRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIIS 220
+ G I A +FD+MP RD +SW A++ G+ + G+ EAL F +M+ G + + S
Sbjct: 355 QCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSS 414
Query: 221 VLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRT 280
L+ CA+V L +G +H ++K ++ V N L+ +Y +CG IE A +F+ M +
Sbjct: 415 ALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKD 474
Query: 281 LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFD 340
+VSWN++I G++ +GF AL +F SM++EG KPD + L+ACSH GL++ G +YF
Sbjct: 475 IVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFY 534
Query: 341 IMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDI 400
M + Y V P +HY C+VDL RAG LEDA N+++NMP +P+ + G+LL A R G+
Sbjct: 535 TMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNT 594
Query: 401 ILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEI 460
LAE + ++P YVLL+N+YA+ G+W GK+R M+ +G++K PG S IEI
Sbjct: 595 ELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEI 654
Query: 461 GSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPET 500
+ H F GD H E + I++ LE L +K GYV +T
Sbjct: 655 QNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKT 694
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 111/460 (24%), Positives = 191/460 (41%), Gaps = 55/460 (11%)
Query: 23 QNLTTTPQISIQTNNSKSTV----NPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNP 78
+L Q IQ + +K + + +W +IS + R+GR EA F RM +
Sbjct: 38 HSLKRATQTQIQKSQTKPLLKCGDSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSS-- 95
Query: 79 NHITFITLLSGC-------------ADFPSQCLF-LGAMIHGLVCKLGLDR--------- 115
+++ ++SG + P + L MI G V L +
Sbjct: 96 --VSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMP 153
Query: 116 -NNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDE 174
+V +L YA+ G +D A VFD M K+ +WNA++ Y++ +E A +F
Sbjct: 154 ERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKS 213
Query: 175 MPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIG 234
+SW LL GFVK+ EA + F M + D V+ +++ A G +
Sbjct: 214 RENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVR----DVVSWNTIITGYAQSGKIDEA 269
Query: 235 LWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVN 294
R + + +V ++ Y + +E AR++F +M +R VSWN+++ G+
Sbjct: 270 ----RQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQG 325
Query: 295 GFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEH 354
+ A E F+ M ++ +T + G I + FD M K VS
Sbjct: 326 ERMEMAKELFDVMPCRNVS----TWNTMITGYAQCGKISEAKNLFDKMPKRDPVS----- 376
Query: 355 YGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDII---LAERLMKYLV 411
+ ++ YS++G +AL + M + + S +A T D++ L ++L LV
Sbjct: 377 WAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLV 436
Query: 412 D--LDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGI 449
+ G LL MY G + A + + M G+ I
Sbjct: 437 KGGYETGCFVGNALLL-MYCKCGSIEEANDLFKEMAGKDI 475
>sp|Q1PEU4|PP201_ARATH Pentatricopeptide repeat-containing protein At2g44880
OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2
Length = 555
Score = 312 bits (799), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 168/471 (35%), Positives = 267/471 (56%), Gaps = 69/471 (14%)
Query: 78 PNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRM--- 134
P++ TF TL C+ S C++ G +H + + G ++ V T ++DMYAKFG+M
Sbjct: 76 PDNFTFTTLTKSCS--LSMCVYQGLQLHSQIWRFGF-CADMYVSTGVVDMYAKFGKMGCA 132
Query: 135 ----------------------------DLATVVFDAM-RVKSSFTWNAMIDGYMRRGDI 165
DLA+ +FD M VK +NAM+DG+++ GD+
Sbjct: 133 RNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVKSGDM 192
Query: 166 ESAVRMFDEM-------------------------------PVRDAISWTALLNGFVKRG 194
SA R+FDEM P R+ +SW ++ G+ +
Sbjct: 193 TSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNK 252
Query: 195 YFEEALECFREMQ-ISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVC 253
+E + F+EMQ + ++PD VTI+SVL A ++ G L +G W H +V ++ VKVC
Sbjct: 253 QPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVC 312
Query: 254 NTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFK 313
++D+YS+CG IE A+++F M ++ + SWN++I G+A+NG AL+ F +M E K
Sbjct: 313 TAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEE-K 371
Query: 314 PDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALN 373
PD ++ +TAC+H GL+E+G ++F +M+++ ++ +IEHYGC+VDL RAG L++A +
Sbjct: 372 PDEITMLAVITACNHGGLVEEGRKWFHVMREM-GLNAKIEHYGCMVDLLGRAGSLKEAED 430
Query: 374 VVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGK 433
++ NMP +PN ++L S L+AC DI AER++K V+L+P D NYVLL N+YAA +
Sbjct: 431 LITNMPFEPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKR 490
Query: 434 WDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEFMAGDRSHIESEHIYSML 484
WD G ++ M+ +K+ G S IEI + EF++GD +H I+ +L
Sbjct: 491 WDDFGMVKNVMRKNQAKKEVGCSLIEINYIVSEFISGDTTHPHRRSIHLVL 541
Score = 40.8 bits (94), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 47/241 (19%), Positives = 94/241 (39%), Gaps = 35/241 (14%)
Query: 241 VLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVF-QRMHKRTLVSWNSIIVGFAVNGFVGE 299
+L+ + NV++ + + + I +AR++F QR + NS+I + +
Sbjct: 1 MLRHAIETNVQIFTKFLVISASAVGIGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYPD 60
Query: 300 ALEYFNSMQKEG-FKPDGVSFTGALTACSHAGLIEDGLRY------FDIMKKIYRVSPRI 352
+ + ++KE F PD +FT +CS + + GL+ F +Y + +
Sbjct: 61 SFALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVV 120
Query: 353 EHY------GC------------------IVDLYSRAGRLEDALNVVENMPMKPNEVVLG 388
+ Y GC ++ Y R G L+ A + + MP + V+
Sbjct: 121 DMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYN 180
Query: 389 SLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448
+++ GD+ A RL ++ + + + Y + D A K+ M R
Sbjct: 181 AMMDGFVKSGDMTSARRLFD---EMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERN 237
Query: 449 I 449
+
Sbjct: 238 L 238
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 311 bits (796), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 163/434 (37%), Positives = 256/434 (58%), Gaps = 4/434 (0%)
Query: 68 FTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDM 127
+T+M P++ITF L+ ++ +C+ +G H + + G +N+V V +L+ M
Sbjct: 105 YTQMLKSRIWPDNITFPFLIKASSEM--ECVLVGEQTHSQIVRFGF-QNDVYVENSLVHM 161
Query: 128 YAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALL 187
YA G + A +F M + +W +M+ GY + G +E+A MFDEMP R+ +W+ ++
Sbjct: 162 YANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMI 221
Query: 188 NGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFK 247
NG+ K FE+A++ F M+ GV + ++SV+++CA++G L G + YV+K
Sbjct: 222 NGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMT 281
Query: 248 DNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSM 307
N+ + L+D++ RCG IE A VF+ + + +SW+SII G AV+G +A+ YF+ M
Sbjct: 282 VNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQM 341
Query: 308 QKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGR 367
GF P V+FT L+ACSH GL+E GL ++ MKK + + PR+EHYGCIVD+ RAG+
Sbjct: 342 ISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGK 401
Query: 368 LEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANM 427
L +A N + M +KPN +LG+LL AC+ + +AER+ L+ + P YVLL+N+
Sbjct: 402 LAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNI 461
Query: 428 YAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEF-MAGDRSHIESEHIYSMLEL 486
YA G+WD +R MK + ++K PG S IEI I++F M D+ H E I E
Sbjct: 462 YACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEE 521
Query: 487 LSFDLKLCGYVPET 500
+ ++L GY T
Sbjct: 522 ILGKIRLIGYKGNT 535
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 122/252 (48%), Gaps = 18/252 (7%)
Query: 45 TVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMI 104
V WTS ++ +C+ G + A F M + N T+ +++G A + C +
Sbjct: 183 VVSWTSMVAGYCKCGMVENAREMFDEM----PHRNLFTWSIMINGYAK--NNCFEKAIDL 236
Query: 105 HGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWN-----AMIDGY 159
+ + G+ N V +++ A G ++ ++ + VKS T N A++D +
Sbjct: 237 FEFMKREGVVANET-VMVSVISSCAHLGALEFGERAYEYV-VKSHMTVNLILGTALVDMF 294
Query: 160 MRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTII 219
R GDIE A+ +F+ +P D++SW++++ G G+ +A+ F +M G P VT
Sbjct: 295 WRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFT 354
Query: 220 SVLNACANVGTLGIGLWIHRYVLK-QDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK 278
+VL+AC++ G + GL I+ + K + ++ ++D+ R G + A +MH
Sbjct: 355 AVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMH- 413
Query: 279 RTLVSWNSIIVG 290
V N+ I+G
Sbjct: 414 ---VKPNAPILG 422
Score = 82.0 bits (201), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 112/243 (46%), Gaps = 32/243 (13%)
Query: 168 AVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACAN 227
A +F ++ + + L+ F +A + +M S + PD +T ++ A +
Sbjct: 70 AYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSE 129
Query: 228 VGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYS-------------------------- 261
+ + +G H +++ F+++V V N+L+ +Y+
Sbjct: 130 MECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSM 189
Query: 262 -----RCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDG 316
+CG +E AR++F M R L +W+ +I G+A N +A++ F M++EG +
Sbjct: 190 VAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANE 249
Query: 317 VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVE 376
+++C+H G +E G R ++ + K + I +VD++ R G +E A++V E
Sbjct: 250 TVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTA-LVDMFWRCGDIEKAIHVFE 308
Query: 377 NMP 379
+P
Sbjct: 309 GLP 311
>sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430
OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1
Length = 570
Score = 310 bits (795), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 168/445 (37%), Positives = 258/445 (57%), Gaps = 10/445 (2%)
Query: 46 VQWTSSISRHCRSGRIAEAALEFTRMTLHGT-NPNHITFITLLSGCADFPSQCLFLGAMI 104
V W IS + +GR +A F RM+ + T ++ LS C+ + L +G I
Sbjct: 113 VSWNGLISSYVGNGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKN--LEIGERI 170
Query: 105 HGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGD 164
+ V + +V +G AL+DM+ K G +D A VFD+MR K+ W +M+ GY+ G
Sbjct: 171 YRFV--VTEFEMSVRIGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGR 228
Query: 165 IESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNA 224
I+ A +F+ PV+D + WTA++NG+V+ F+EALE FR MQ +G+ PD ++S+L
Sbjct: 229 IDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTG 288
Query: 225 CANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSW 284
CA G L G WIH Y+ + + V L+D+Y++CGCIE A +VF + +R SW
Sbjct: 289 CAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASW 348
Query: 285 NSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKK 344
S+I G A+NG G AL+ + M+ G + D ++F LTAC+H G + +G + F M +
Sbjct: 349 TSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTE 408
Query: 345 IYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEV---VLGSLLAACRTKGDII 401
+ V P+ EH C++DL RAG L++A +++ M + +E V SLL+A R G++
Sbjct: 409 RHNVQPKSEHCSCLIDLLCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVK 468
Query: 402 LAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIG 461
+AER+ + L ++ S + LLA++YA+ +W+ +RR MK GI+K PG SSIEI
Sbjct: 469 IAERVAEKLEKVEVSDSSAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEID 528
Query: 462 SGIHEFMAGDR--SHIESEHIYSML 484
HEF+ GD SH + + I SML
Sbjct: 529 GVGHEFIVGDDLLSHPKMDEINSML 553
Score = 139 bits (350), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 134/258 (51%), Gaps = 34/258 (13%)
Query: 149 SFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREM-Q 207
S+ N+++ Y G IE ++FDEMP RD +SW L++ +V G FE+A+ F+ M Q
Sbjct: 81 SYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQ 140
Query: 208 ISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIE 267
S ++ D TI+S L+AC+ + L IG I+R+V+ + F+ +V++ N L+D++ +CGC++
Sbjct: 141 ESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTE-FEMSVRIGNALVDMFCKCGCLD 199
Query: 268 FARQVFQRMHKRTLVSWNSIIVGFA--------------------------VNGFV---- 297
AR VF M + + W S++ G+ +NG+V
Sbjct: 200 KARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNR 259
Query: 298 -GEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYG 356
EALE F MQ G +PD LT C+ G +E G ++ RV+
Sbjct: 260 FDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQG-KWIHGYINENRVTVDKVVGT 318
Query: 357 CIVDLYSRAGRLEDALNV 374
+VD+Y++ G +E AL V
Sbjct: 319 ALVDMYAKCGCIETALEV 336
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 111/239 (46%), Gaps = 35/239 (14%)
Query: 39 KSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCL 98
+S V V WT+ ++ + + R EA F M G P++ ++LL+GCA + L
Sbjct: 238 RSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCA--QTGAL 295
Query: 99 FLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDG 158
G IHG + + + + V VGTAL+DMYAK G ++ A VF ++ + + +W
Sbjct: 296 EQGKWIHGYINENRVTVDKV-VGTALVDMYAKCGCIETALEVFYEIKERDTASW------ 348
Query: 159 YMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTI 218
T+L+ G G AL+ + EM+ GV D +T
Sbjct: 349 -------------------------TSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITF 383
Query: 219 ISVLNACANVGTLGIGLWI-HRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRM 276
++VL AC + G + G I H + + + + C+ LIDL R G ++ A ++ +M
Sbjct: 384 VAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDLLCRAGLLDEAEELIDKM 442
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 127/270 (47%), Gaps = 9/270 (3%)
Query: 183 WTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVL 242
+ +L F + L F E++ G+ PD T+ VL + + + G +H Y +
Sbjct: 14 YNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAV 73
Query: 243 KQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE 302
K + + V N+L+ +Y+ G IE +VF M +R +VSWN +I + NG +A+
Sbjct: 74 KAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIG 133
Query: 303 YFNSMQKEG-FKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDL 361
F M +E K D + L+ACS +E G R + + + +S RI + +VD+
Sbjct: 134 VFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVRIGN--ALVDM 191
Query: 362 YSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSN- 420
+ + G L+ A V ++M K N S++ + G I A + L + P D
Sbjct: 192 FCKCGCLDKARAVFDSMRDK-NVKCWTSMVFGYVSTGRIDEA----RVLFERSPVKDVVL 246
Query: 421 YVLLANMYAAVGKWDGAGKIRRTMKGRGIQ 450
+ + N Y ++D A ++ R M+ GI+
Sbjct: 247 WTAMMNGYVQFNRFDEALELFRCMQTAGIR 276
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 307 bits (786), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 168/467 (35%), Positives = 260/467 (55%), Gaps = 37/467 (7%)
Query: 45 TVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMI 104
V WT+ ISR+ ++G +EA F M PN TF T+L+ C + L LG I
Sbjct: 118 VVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSC--IRASGLGLGKQI 175
Query: 105 HGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGD 164
HGL+ K D +++ VG++LLDMYAK G
Sbjct: 176 HGLIVKWNYD-SHIFVGSSLLDMYAK-------------------------------AGQ 203
Query: 165 IESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNA 224
I+ A +F+ +P RD +S TA++ G+ + G EEALE F + G+ P+YVT S+L A
Sbjct: 204 IKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTA 263
Query: 225 CANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSW 284
+ + L G H +VL+++ + N+LID+YS+CG + +AR++F M +RT +SW
Sbjct: 264 LSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISW 323
Query: 285 NSIIVGFAVNGFVGEALEYFNSMQKEG-FKPDGVSFTGALTACSHAGLIEDGLRYFD-IM 342
N+++VG++ +G E LE F M+ E KPD V+ L+ CSH + + GL FD ++
Sbjct: 324 NAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMV 383
Query: 343 KKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIIL 402
Y P EHYGCIVD+ RAGR+++A ++ MP KP VLGSLL ACR + +
Sbjct: 384 AGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDI 443
Query: 403 AERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGS 462
E + + L++++P NYV+L+N+YA+ G+W +R M + + K+PG S I+
Sbjct: 444 GESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQ 503
Query: 463 GIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPETVAGELYEND 509
+H F A DR+H E + + ++ +S +K GYVP+ ++ LY+ D
Sbjct: 504 TLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPD-LSCVLYDVD 549
Score = 142 bits (357), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 97/350 (27%), Positives = 175/350 (50%), Gaps = 40/350 (11%)
Query: 33 IQTNNSKSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCAD 92
I + S S N +Q IS+ C +GR+ EA LE M + G + LL+ C D
Sbjct: 8 IHRSFSSSPTNYVLQTILPISQLCSNGRLQEALLE---MAMLGPEMGFHGYDALLNACLD 64
Query: 93 FPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTW 152
+ L G +H M+ T L +++
Sbjct: 65 --KRALRDGQRVHAH-----------MIKTRYL---------------------PATYLR 90
Query: 153 NAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVE 212
++ Y + +E A ++ DEMP ++ +SWTA+++ + + G+ EAL F EM S +
Sbjct: 91 TRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGK 150
Query: 213 PDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQV 272
P+ T +VL +C LG+G IH ++K ++ ++ V ++L+D+Y++ G I+ AR++
Sbjct: 151 PNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREI 210
Query: 273 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLI 332
F+ + +R +VS +II G+A G EALE F+ + EG P+ V++ LTA S L+
Sbjct: 211 FECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALL 270
Query: 333 EDGLR-YFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMK 381
+ G + + ++++ +++ ++D+YS+ G L A + +NMP +
Sbjct: 271 DHGKQAHCHVLRRELPFYAVLQN--SLIDMYSKCGNLSYARRLFDNMPER 318
Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 123/263 (46%), Gaps = 9/263 (3%)
Query: 170 RMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVG 229
R F P + ++ G +EAL EM + G E + ++LNAC +
Sbjct: 10 RSFSSSPTNYVLQTILPISQLCSNGRLQEAL---LEMAMLGPEMGFHGYDALLNACLDKR 66
Query: 230 TLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIV 289
L G +H +++K + + L+ Y +C C+E AR+V M ++ +VSW ++I
Sbjct: 67 ALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMIS 126
Query: 290 GFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVS 349
++ G EAL F M + KP+ +F LT+C A + G + ++ K +
Sbjct: 127 RYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVK-WNYD 185
Query: 350 PRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKY 409
I ++D+Y++AG++++A + E +P + +VV S A + L E ++
Sbjct: 186 SHIFVGSSLLDMYAKAGQIKEAREIFECLPER--DVV--SCTAIIAGYAQLGLDEEALEM 241
Query: 410 LVDL-DPGVDSNYVLLANMYAAV 431
L G+ NYV A++ A+
Sbjct: 242 FHRLHSEGMSPNYVTYASLLTAL 264
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 306 bits (783), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 163/461 (35%), Positives = 263/461 (57%), Gaps = 36/461 (7%)
Query: 42 VNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLG 101
V V W + IS + +G EA F M P+ T +T++S CA S + LG
Sbjct: 228 VKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQ--SGSIELG 285
Query: 102 AMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMR 161
+H + G N +V NA+ID Y +
Sbjct: 286 RQVHLWIDDHGFGSNLKIV--------------------------------NALIDLYSK 313
Query: 162 RGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISV 221
G++E+A +F+ +P +D ISW L+ G+ ++EAL F+EM SG P+ VT++S+
Sbjct: 314 CGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSI 373
Query: 222 LNACANVGTLGIGLWIHRYVLK--QDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR 279
L ACA++G + IG WIH Y+ K + + + +LID+Y++CG IE A QVF + +
Sbjct: 374 LPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHK 433
Query: 280 TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYF 339
+L SWN++I GFA++G + + F+ M+K G +PD ++F G L+ACSH+G+++ G F
Sbjct: 434 SLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIF 493
Query: 340 DIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGD 399
M + Y+++P++EHYGC++DL +G ++A ++ M M+P+ V+ SLL AC+ G+
Sbjct: 494 RTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGN 553
Query: 400 IILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIE 459
+ L E + L+ ++P +YVLL+N+YA+ G+W+ K R + +G++K PG SSIE
Sbjct: 554 VELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIE 613
Query: 460 IGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPET 500
I S +HEF+ GD+ H + IY MLE + L+ G+VP+T
Sbjct: 614 IDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDT 654
Score = 216 bits (549), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 133/403 (33%), Positives = 214/403 (53%), Gaps = 14/403 (3%)
Query: 48 WTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGL 107
W + H S A + M G PN TF +L CA S+ G IHG
Sbjct: 102 WNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAK--SKAFKEGQQIHGH 159
Query: 108 VCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIES 167
V KLG D + + V T+L+ MY + GR++ A VFD + ++ A+I GY RG IE+
Sbjct: 160 VLKLGCDLD-LYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIEN 218
Query: 168 AVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACAN 227
A ++FDE+PV+D +SW A+++G+ + G ++EALE F++M + V PD T+++V++ACA
Sbjct: 219 AQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQ 278
Query: 228 VGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSI 287
G++ +G +H ++ F N+K+ N LIDLYS+CG +E A +F+R+ + ++SWN++
Sbjct: 279 SGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTL 338
Query: 288 IVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIM--KKI 345
I G+ EAL F M + G P+ V+ L AC+H G I+ G R+ + K++
Sbjct: 339 IGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG-RWIHVYIDKRL 397
Query: 346 YRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKP----NEVVLGSLLAACRTKGDII 401
V+ ++D+Y++ G +E A V ++ K N ++ G + R
Sbjct: 398 KGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHG-RADASFD 456
Query: 402 LAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTM 444
L R+ K + D D +V L + + G D I RTM
Sbjct: 457 LFSRMRKIGIQPD---DITFVGLLSACSHSGMLDLGRHIFRTM 496
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 100/433 (23%), Positives = 166/433 (38%), Gaps = 110/433 (25%)
Query: 79 NHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLD---MYAKFGRMD 135
NH + ++LL C S +IH + K+GL N + + L++ + F +
Sbjct: 33 NHPS-LSLLHNCKTLQSL-----RIIHAQMIKIGLHNTNYAL-SKLIEFCILSPHFEGLP 85
Query: 136 LATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGY 195
A VF ++ + WN M G+ D SA++++
Sbjct: 86 YAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLY----------------------- 122
Query: 196 FEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNT 255
C + G+ P+ T VL +CA G IH +VLK ++ V +
Sbjct: 123 -----VCMISL---GLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTS 174
Query: 256 LIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFV------------------ 297
LI +Y + G +E A +VF + R +VS+ ++I G+A G++
Sbjct: 175 LISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSW 234
Query: 298 -------------GEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKK 344
EALE F M K +PD + ++AC+ +G IE G R +
Sbjct: 235 NAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELG-RQVHLWID 293
Query: 345 IYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMK----------------------- 381
+ ++ ++DLYS+ G LE A + E +P K
Sbjct: 294 DHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALL 353
Query: 382 -----------PNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVL---LANM 427
PN+V + S+L AC G I + + Y+ GV + L L +M
Sbjct: 354 LFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDM 413
Query: 428 YAAVGKWDGAGKI 440
YA G + A ++
Sbjct: 414 YAKCGDIEAAHQV 426
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 124/279 (44%), Gaps = 33/279 (11%)
Query: 209 SGVEPDYVTI-----ISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLID---LY 260
S +P Y +I +S+L+ C + +L I IH ++K + + LI+ L
Sbjct: 22 SSSDPPYDSIRNHPSLSLLHNCKTLQSLRI---IHAQMIKIGLHNTNYALSKLIEFCILS 78
Query: 261 SRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFT 320
+ +A VF+ + + L+ WN++ G A++ AL+ + M G P+ +F
Sbjct: 79 PHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFP 138
Query: 321 GALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHY--GCIVDLYSRAGRLEDALNVVENM 378
L +C+ + ++G + I + ++ ++ Y ++ +Y + GRLEDA V +
Sbjct: 139 FVLKSCAKSKAFKEGQQ---IHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKS 195
Query: 379 PMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVD-SNYVLLANMYAAVGKWDGA 437
P + + V +L+ ++G I A++L D P D ++ + + YA G + A
Sbjct: 196 PHR-DVVSYTALIKGYASRGYIENAQKLF----DEIPVKDVVSWNAMISGYAETGNYKEA 250
Query: 438 GKIRRTMKGRGIQKKPGL-----------SSIEIGSGIH 465
++ + M ++ SIE+G +H
Sbjct: 251 LELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVH 289
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 306 bits (783), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 178/502 (35%), Positives = 276/502 (54%), Gaps = 62/502 (12%)
Query: 33 IQTNNSKSTVNPTVQWTSSISRHCR-------------SGRIAEAALEFTRMTLHG-TNP 78
+Q ++S S VN + SI H R EA + + +M G ++P
Sbjct: 90 LQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSP 149
Query: 79 NHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLAT 138
+ TF +L CA G +H + K G +V V L+ +Y G +DLA
Sbjct: 150 DKHTFPFVLKACAYIFG--FSEGKQVHCQIVKHGFG-GDVYVNNGLIHLYGSCGCLDLAR 206
Query: 139 VVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEE 198
++FDEMP R +SW ++++ V+ G ++
Sbjct: 207 -------------------------------KVFDEMPERSLVSWNSMIDALVRFGEYDS 235
Query: 199 ALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQ---DFKDNVKVCNT 255
AL+ FREMQ S EPD T+ SVL+ACA +G+L +G W H ++L++ D +V V N+
Sbjct: 236 ALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNS 294
Query: 256 LIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSM--QKEGFK 313
LI++Y +CG + A QVFQ M KR L SWN++I+GFA +G EA+ +F+ M ++E +
Sbjct: 295 LIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVR 354
Query: 314 PDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALN 373
P+ V+F G L AC+H G + G +YFD+M + Y + P +EHYGCIVDL +RAG + +A++
Sbjct: 355 PNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAID 414
Query: 374 VVENMPMKPNEVVLGSLLAACRTKG-DIILAERLMKYLVDLDPGVDSN-------YVLLA 425
+V +MPMKP+ V+ SLL AC KG + L+E + + ++ +S+ YVLL+
Sbjct: 415 MVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLS 474
Query: 426 NMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEFMAGDRSHIESEHIYSMLE 485
+YA+ +W+ G +R+ M GI+K+PG SSIEI HEF AGD SH +++ IY L+
Sbjct: 475 RVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLK 534
Query: 486 LLSFDLKLCGYVPETVAGELYE 507
++ L+ GY+P+ L +
Sbjct: 535 VIDDRLRSIGYLPDRSQAPLVD 556
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/276 (20%), Positives = 110/276 (39%), Gaps = 50/276 (18%)
Query: 218 IISVLNACANVGTLGIGLWIHRYVLKQDFKD---NVKVCNTLIDLYSRCGCIEFARQVFQ 274
I S+ C+++ L +H + L+ + + + + ++ L S + +A +VF
Sbjct: 51 IFSLAETCSDMSQLK---QLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFD 107
Query: 275 RMHKRTLVSWNSIIVGFAVN-GFVGEALEYFNSMQKEG-FKPDGVSFTGALTACS----- 327
+ + WN++I A + EA + M + G PD +F L AC+
Sbjct: 108 SIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGF 167
Query: 328 ------HAGLIEDGL-----------------RYFDIMKKIYRVSPR--IEHYGCIVDLY 362
H +++ G D+ +K++ P + + ++D
Sbjct: 168 SEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDAL 227
Query: 363 SRAGRLEDALNVVENM--PMKPNEVVLGSLLAACRTKGDIILAERLMKYLV---DLDPGV 417
R G + AL + M +P+ + S+L+AC G + L +L+ D+D +
Sbjct: 228 VRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAM 287
Query: 418 DSNYVLLAN----MYAAVGKWDGAGKIRRTMKGRGI 449
D VL+ N MY G A ++ + M+ R +
Sbjct: 288 D---VLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDL 320
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 304 bits (779), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 169/461 (36%), Positives = 252/461 (54%), Gaps = 41/461 (8%)
Query: 42 VNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADF-PSQCLFL 100
V V WT+ IS ++ EA F+ M G PN T+ +L+ PS+
Sbjct: 359 VGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSE---- 414
Query: 101 GAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYM 160
+H V K +R++ VGTALLD Y K G+++ A VF + K W+AM+ GY
Sbjct: 415 ---VHAQVVKTNYERSST-VGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYA 470
Query: 161 RRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIIS 220
+ G+ E+A++MF E+ +G G++P+ T S
Sbjct: 471 QTGETEAAIKMFGELT----------------KG---------------GIKPNEFTFSS 499
Query: 221 VLNACANV-GTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR 279
+LN CA ++G G H + +K ++ V + L+ +Y++ G IE A +VF+R ++
Sbjct: 500 ILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREK 559
Query: 280 TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYF 339
LVSWNS+I G+A +G +AL+ F M+K K DGV+F G AC+HAGL+E+G +YF
Sbjct: 560 DLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYF 619
Query: 340 DIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGD 399
DIM + +++P EH C+VDLYSRAG+LE A+ V+ENMP + ++LAACR
Sbjct: 620 DIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKK 679
Query: 400 IILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIE 459
L + ++ + P + YVLL+NMYA G W K+R+ M R ++K+PG S IE
Sbjct: 680 TELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIE 739
Query: 460 IGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPET 500
+ + + F+AGDRSH + IY LE LS LK GY P+T
Sbjct: 740 VKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDT 780
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 97/175 (55%)
Query: 154 AMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEP 213
+++D YM+ + + ++FDEM R+ ++WT L++G+ + +E L F MQ G +P
Sbjct: 133 SLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQP 192
Query: 214 DYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVF 273
+ T + L A G G GL +H V+K + V N+LI+LY +CG + AR +F
Sbjct: 193 NSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILF 252
Query: 274 QRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSH 328
+ +++V+WNS+I G+A NG EAL F SM+ + SF + C++
Sbjct: 253 DKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCAN 307
Score = 109 bits (272), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 114/459 (24%), Positives = 201/459 (43%), Gaps = 55/459 (11%)
Query: 46 VQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIH 105
V WT+ IS + R+ E F RM GT PN TF L A+ G +H
Sbjct: 160 VTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAE--EGVGGRGLQVH 217
Query: 106 GLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDI 165
+V K GLD K+ N++I+ Y++ G++
Sbjct: 218 TVVVKNGLD--------------------------------KTIPVSNSLINLYLKCGNV 245
Query: 166 ESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNAC 225
A +FD+ V+ ++W ++++G+ G EAL F M+++ V + SV+ C
Sbjct: 246 RKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLC 305
Query: 226 ANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH-KRTLVSW 284
AN+ L +H V+K F + + L+ YS+C + A ++F+ + +VSW
Sbjct: 306 ANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSW 365
Query: 285 NSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKK 344
++I GF N EA++ F+ M+++G +P+ +++ LTA +I + ++K
Sbjct: 366 TAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALP---VISPSEVHAQVVKT 422
Query: 345 IYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAE 404
Y S + ++D Y + G++E+A V + K + V ++LA G+ A
Sbjct: 423 NYERSSTVG--TALLDAYVKLGKVEEAAKVFSGIDDK-DIVAWSAMLAGYAQTGETEAAI 479
Query: 405 RLMKYLVDLDPGVDSN---YVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIG 461
++ L G+ N + + N+ AA G GK + G K L S
Sbjct: 480 KMFGELT--KGGIKPNEFTFSSILNVCAATNASMGQGK-----QFHGFAIKSRLDSSLCV 532
Query: 462 SGIHEFMAGDRSHIES-EHIYSML---ELLSFDLKLCGY 496
S M + +IES E ++ +L+S++ + GY
Sbjct: 533 SSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGY 571
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 108/224 (48%), Gaps = 1/224 (0%)
Query: 158 GYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVT 217
G + + +A +FD+ P RD S+ +LL GF + G +EA F + G+E D
Sbjct: 36 GTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSI 95
Query: 218 IISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH 277
SVL A + G +H +K F D+V V +L+D Y + + R+VF M
Sbjct: 96 FSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMK 155
Query: 278 KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLR 337
+R +V+W ++I G+A N E L F MQ EG +P+ +F AL + G+ GL+
Sbjct: 156 ERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQ 215
Query: 338 YFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMK 381
++ K + I +++LY + G + A + + +K
Sbjct: 216 VHTVVVK-NGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVK 258
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 303 bits (777), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 159/456 (34%), Positives = 252/456 (55%), Gaps = 34/456 (7%)
Query: 45 TVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMI 104
V WT+ S + SGR EA F +M G P+ + +LS C
Sbjct: 177 VVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGD--------- 227
Query: 105 HGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGD 164
LD +V Y + M K+SF +++ Y + G
Sbjct: 228 --------LDSGEWIVK------YMEEMEMQ-----------KNSFVRTTLVNLYAKCGK 262
Query: 165 IESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNA 224
+E A +FD M +D ++W+ ++ G+ + +E +E F +M ++PD +I+ L++
Sbjct: 263 MEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSS 322
Query: 225 CANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSW 284
CA++G L +G W + + +F N+ + N LID+Y++CG + +VF+ M ++ +V
Sbjct: 323 CASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIM 382
Query: 285 NSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKK 344
N+ I G A NG V + F +K G PDG +F G L C HAGLI+DGLR+F+ +
Sbjct: 383 NAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISC 442
Query: 345 IYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAE 404
+Y + +EHYGC+VDL+ RAG L+DA ++ +MPM+PN +V G+LL+ CR D LAE
Sbjct: 443 VYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAE 502
Query: 405 RLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGI 464
++K L+ L+P NYV L+N+Y+ G+WD A ++R M +G++K PG S IE+ +
Sbjct: 503 TVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKV 562
Query: 465 HEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPET 500
HEF+A D+SH S+ IY+ LE L +++L G+VP T
Sbjct: 563 HEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTT 598
Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 171/336 (50%), Gaps = 36/336 (10%)
Query: 68 FTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDM 127
F + HG + TF +L C S+ L G +H LV K G + ++V T+LL +
Sbjct: 99 FLSIRKHGLYLHGFTFPLVLKACTRASSRKL--GIDLHSLVVKCGFN-HDVAAMTSLLSI 155
Query: 128 YAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALL 187
Y+ GR++ A ++FDE+P R ++WTAL
Sbjct: 156 YSGSGRLN-------------------------------DAHKLFDEIPDRSVVTWTALF 184
Query: 188 NGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFK 247
+G+ G EA++ F++M GV+PD I+ VL+AC +VG L G WI +Y+ + + +
Sbjct: 185 SGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQ 244
Query: 248 DNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSM 307
N V TL++LY++CG +E AR VF M ++ +V+W+++I G+A N F E +E F M
Sbjct: 245 KNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQM 304
Query: 308 QKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGR 367
+E KPD S G L++C+ G ++ G ++ + + + ++D+Y++ G
Sbjct: 305 LQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDR-HEFLTNLFMANALIDMYAKCGA 363
Query: 368 LEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILA 403
+ V + M K + V++ + ++ G + L+
Sbjct: 364 MARGFEVFKEMKEK-DIVIMNAAISGLAKNGHVKLS 398
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 107/214 (50%), Gaps = 7/214 (3%)
Query: 171 MFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGT 230
+F + + +L+NGFV F E L+ F ++ G+ T VL AC +
Sbjct: 67 LFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASS 126
Query: 231 LGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVG 290
+G+ +H V+K F +V +L+ +YS G + A ++F + R++V+W ++ G
Sbjct: 127 RKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSG 186
Query: 291 FAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDG---LRYFDIMKKIYR 347
+ +G EA++ F M + G KPD L+AC H G ++ G ++Y + M+
Sbjct: 187 YTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKN 246
Query: 348 VSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMK 381
R +V+LY++ G++E A +V ++M K
Sbjct: 247 SFVRTT----LVNLYAKCGKMEKARSVFDSMVEK 276
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 113/268 (42%), Gaps = 42/268 (15%)
Query: 217 TIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRM 276
T+ISV ++ + + L I+ ++ F N+ + TL ++ + F+ F
Sbjct: 18 TLISVACTVNHLKQIHVSL-INHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFP-- 74
Query: 277 HKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGL 336
+ +NS+I GF N E L+ F S++K G G +F L AC+ A + G+
Sbjct: 75 ---NIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGI 131
Query: 337 RYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMP----------------- 379
++ K + + ++ +YS +GRL DA + + +P
Sbjct: 132 DLHSLVVKC-GFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTS 190
Query: 380 -----------------MKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNY- 421
+KP+ + +L+AC GD+ E ++KY+ +++ +S
Sbjct: 191 GRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVR 250
Query: 422 VLLANMYAAVGKWDGAGKIRRTMKGRGI 449
L N+YA GK + A + +M + I
Sbjct: 251 TTLVNLYAKCGKMEKARSVFDSMVEKDI 278
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 303 bits (776), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 164/465 (35%), Positives = 252/465 (54%), Gaps = 34/465 (7%)
Query: 45 TVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMI 104
V W S I + ++ EA L F +M G P ++ + L CAD L G I
Sbjct: 302 VVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGD--LERGRFI 359
Query: 105 HGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGD 164
H L +LGLDRN +V N++I Y + +
Sbjct: 360 HKLSVELGLDRNVSVV--------------------------------NSLISMYCKCKE 387
Query: 165 IESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNA 224
+++A MF ++ R +SW A++ GF + G +AL F +M+ V+PD T +SV+ A
Sbjct: 388 VDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITA 447
Query: 225 CANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSW 284
A + WIH V++ NV V L+D+Y++CG I AR +F M +R + +W
Sbjct: 448 IAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTW 507
Query: 285 NSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKK 344
N++I G+ +GF ALE F MQK KP+GV+F ++ACSH+GL+E GL+ F +MK+
Sbjct: 508 NAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKE 567
Query: 345 IYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAE 404
Y + ++HYG +VDL RAGRL +A + + MP+KP V G++L AC+ ++ AE
Sbjct: 568 NYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAE 627
Query: 405 RLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGI 464
+ + L +L+P +VLLAN+Y A W+ G++R +M +G++K PG S +EI + +
Sbjct: 628 KAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEV 687
Query: 465 HEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPETVAGELYEND 509
H F +G +H +S+ IY+ LE L +K GYVP+T END
Sbjct: 688 HSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVLGVEND 732
Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 107/387 (27%), Positives = 187/387 (48%), Gaps = 69/387 (17%)
Query: 46 VQWTSSISRHCRSGRIAEAALEFTR-MTLHGTNPNHITFITLLSGCADFPSQCLFLGAMI 104
V W + ++ + ++G +A ALE + M P+ IT +++L + + + +G I
Sbjct: 202 VSWNTIVAGYSQNG-MARMALEMVKSMCEENLKPSFITIVSVLPAVSAL--RLISVGKEI 258
Query: 105 HGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGD 164
HG + G D + V + TAL+DMYAK G
Sbjct: 259 HGYAMRSGFD-SLVNISTALVDMYAKC-------------------------------GS 286
Query: 165 IESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNA 224
+E+A ++FD M R+ +SW ++++ +V+ +EA+ F++M GV+P V+++ L+A
Sbjct: 287 LETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHA 346
Query: 225 CANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSW 284
CA++G L G +IH+ ++ NV V N+LI +Y +C ++ A +F ++ RTLVSW
Sbjct: 347 CADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSW 406
Query: 285 NSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACS------HAGLIEDGLRY 338
N++I+GFA NG +AL YF+ M+ KPD ++ +TA + HA I +
Sbjct: 407 NAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMR 466
Query: 339 FDIMKKIYRVSPRIEHYG------------------------CIVDLYSRAGRLEDALNV 374
+ K ++ + ++ Y ++D Y G + AL +
Sbjct: 467 SCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALEL 526
Query: 375 VENM---PMKPNEVVLGSLLAACRTKG 398
E M +KPN V S+++AC G
Sbjct: 527 FEEMQKGTIKPNGVTFLSVISACSHSG 553
Score = 143 bits (361), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/268 (32%), Positives = 128/268 (47%), Gaps = 34/268 (12%)
Query: 68 FTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDM 127
F RM P F LL C D L +G IHGL+ K G LD+
Sbjct: 123 FVRMRYDDVEPVVYNFTYLLKVCGDEAE--LRVGKEIHGLLVKSGFS----------LDL 170
Query: 128 YAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALL 187
+A G ++ Y + + A ++FD MP RD +SW ++
Sbjct: 171 FAMTGLENM----------------------YAKCRQVNEARKVFDRMPERDLVSWNTIV 208
Query: 188 NGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFK 247
G+ + G ALE + M ++P ++TI+SVL A + + + +G IH Y ++ F
Sbjct: 209 AGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFD 268
Query: 248 DNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSM 307
V + L+D+Y++CG +E ARQ+F M +R +VSWNS+I + N EA+ F M
Sbjct: 269 SLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKM 328
Query: 308 QKEGFKPDGVSFTGALTACSHAGLIEDG 335
EG KP VS GAL AC+ G +E G
Sbjct: 329 LDEGVKPTDVSVMGALHACADLGDLERG 356
Score = 119 bits (297), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 90/354 (25%), Positives = 154/354 (43%), Gaps = 52/354 (14%)
Query: 139 VVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEE 198
+VF + F ++ + R G ++ A R+F+ + + + + +L GF K ++
Sbjct: 59 LVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDK 118
Query: 199 ALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLID 258
AL+ F M+ VEP +L C + L +G IH ++K F ++ L +
Sbjct: 119 ALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLEN 178
Query: 259 LYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVS 318
+Y++C + AR+VF RM +R LVSWN+I+ G++ NG ALE SM +E KP ++
Sbjct: 179 MYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFIT 238
Query: 319 FTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR------IEHYGCIVDLYSRAGRLEDAL 372
L A S LR + K+I+ + R + +VD+Y++ G LE A
Sbjct: 239 IVSVLPAVS-------ALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETAR 291
Query: 373 NVVENM----------------------------------PMKPNEVVLGSLLAACRTKG 398
+ + M +KP +V + L AC G
Sbjct: 292 QLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLG 351
Query: 399 DIILAERLMKYLVDLDPGVDSNYVL---LANMYAAVGKWDGAGKIRRTMKGRGI 449
D+ + K V+L G+D N + L +MY + D A + ++ R +
Sbjct: 352 DLERGRFIHKLSVEL--GLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTL 403
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 301 bits (772), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 156/455 (34%), Positives = 253/455 (55%), Gaps = 4/455 (0%)
Query: 46 VQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIH 105
V + + IS + G EA RM G + T+ +++ CA + L LG +H
Sbjct: 252 VAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACA--TAGLLQLGKQVH 309
Query: 106 GLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDI 165
V L + + +L+ +Y K G+ D A +F+ M K +WNA++ GY+ G I
Sbjct: 310 AYV--LRREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHI 367
Query: 166 ESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNAC 225
A +F EM ++ +SW +++G + G+ EE L+ F M+ G EP + +C
Sbjct: 368 GEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSC 427
Query: 226 ANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWN 285
A +G G H +LK F ++ N LI +Y++CG +E ARQVF+ M VSWN
Sbjct: 428 AVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWN 487
Query: 286 SIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKI 345
++I +G EA++ + M K+G +PD ++ LTACSHAGL++ G +YFD M+ +
Sbjct: 488 ALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETV 547
Query: 346 YRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAER 405
YR+ P +HY ++DL R+G+ DA +V+E++P KP + +LL+ CR G++ L
Sbjct: 548 YRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGII 607
Query: 406 LMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIH 465
L L P D Y+LL+NM+AA G+W+ ++R+ M+ RG++K+ S IE+ + +H
Sbjct: 608 AADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVH 667
Query: 466 EFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPET 500
F+ D SH E+E +Y L+ L +++ GYVP+T
Sbjct: 668 TFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDT 702
Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 134/509 (26%), Positives = 230/509 (45%), Gaps = 103/509 (20%)
Query: 68 FTRMTLHGTNPNHITFITLLSG---CADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTAL 124
F +M G P++ TF ++L+G AD QC+ H K G V AL
Sbjct: 136 FCKMKHEGFKPDNFTFASVLAGLALVADDEKQCV----QFHAAALKSGAGYITS-VSNAL 190
Query: 125 LDMYAKFGR----MDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVR-D 179
+ +Y+K + A VFD + K +W M+ GY++ G + + + M
Sbjct: 191 VSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMK 250
Query: 180 AISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHR 239
+++ A+++G+V RG+++EALE R M SG+E D T SV+ ACA G L +G +H
Sbjct: 251 LVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHA 310
Query: 240 YVL-KQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG 298
YVL ++DF + N+L+ LY +CG + AR +F++M + LVSWN+++ G+ +G +G
Sbjct: 311 YVLRREDFSFHFD--NSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIG 368
Query: 299 EA-------------------------------LEYFNSMQKEGFKPDGVSFTGALTACS 327
EA L+ F+ M++EGF+P +F+GA+ +C+
Sbjct: 369 EAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCA 428
Query: 328 HAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMP-------- 379
G +G +Y + KI + ++ +Y++ G +E+A V MP
Sbjct: 429 VLGAYCNGQQYHAQLLKI-GFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWN 487
Query: 380 --------------------------MKPNEVVLGSLLAACRTKGDIILAERL---MKYL 410
++P+ + L ++L AC G + + M+ +
Sbjct: 488 ALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETV 547
Query: 411 VDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEFMAG 470
+ PG D +Y L ++ GK+ A + I+ P + EI + ++G
Sbjct: 548 YRIPPGAD-HYARLIDLLCRSGKFSDAESV--------IESLPFKPTAEIWEAL---LSG 595
Query: 471 DRSHIESEHIYSMLELLSFDLKLCGYVPE 499
R H E L +++ D KL G +PE
Sbjct: 596 CRVHGNME-----LGIIAAD-KLFGLIPE 618
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/364 (25%), Positives = 153/364 (42%), Gaps = 55/364 (15%)
Query: 90 CADFPSQCLFLGAMIHGLVCKLGLD-RNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKS 148
C L L +HG + G R +++ L+D+Y K ++ A +FD +
Sbjct: 22 CLPLRRTSLQLARAVHGNIITFGFQPRAHIL--NRLIDVYCKSSELNYARQLFDEISEPD 79
Query: 149 SFTWNAMIDGYMRRGDIESAVRMFDEMPV--RDAISWTALLNGFVKRGYFEEALECFREM 206
M+ GY GDI A +F++ PV RD + + A++ GF A+ F +M
Sbjct: 80 KIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKM 139
Query: 207 QISGVEPDYVTIISVLNACANVG-TLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGC 265
+ G +PD T SVL A V + H LK V N L+ +YS+C
Sbjct: 140 KHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCAS 199
Query: 266 ----IEFARQVFQRMHKR--------------------------------TLVSWNSIIV 289
+ AR+VF + ++ LV++N++I
Sbjct: 200 SPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMIS 259
Query: 290 GFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVS 349
G+ GF EALE M G + D ++ + AC+ AGL++ G K+++
Sbjct: 260 GYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLG-------KQVHAYV 312
Query: 350 PRIEHYG-----CIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAE 404
R E + +V LY + G+ ++A + E MP K + V +LL+ + G I A+
Sbjct: 313 LRREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAK-DLVSWNALLSGYVSSGHIGEAK 371
Query: 405 RLMK 408
+ K
Sbjct: 372 LIFK 375
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 299 bits (766), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 165/457 (36%), Positives = 255/457 (55%), Gaps = 41/457 (8%)
Query: 45 TVQWTSSISRHCRSGRIAEAALEFTRMTLH-GTNPNHITFITLLSGCADFPSQCLFLGAM 103
+ WT+ IS + + +I + ALE + L PN T+ ++L C M
Sbjct: 127 VISWTTMISAYSKC-KIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV-----RM 180
Query: 104 IHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRG 163
+H + K GL+ ++V V +AL+D++AK G
Sbjct: 181 LHCGIIKEGLE-SDVFVRSALIDVFAKL-------------------------------G 208
Query: 164 DIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLN 223
+ E A+ +FDEM DAI W +++ GF + + ALE F+ M+ +G + T+ SVL
Sbjct: 209 EPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLR 268
Query: 224 ACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVS 283
AC + L +G+ H +++K D ++ + N L+D+Y +CG +E A +VF +M +R +++
Sbjct: 269 ACTGLALLELGMQAHVHIVKYD--QDLILNNALVDMYCKCGSLEDALRVFNQMKERDVIT 326
Query: 284 WNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMK 343
W+++I G A NG+ EAL+ F M+ G KP+ ++ G L ACSHAGL+EDG YF MK
Sbjct: 327 WSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMK 386
Query: 344 KIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILA 403
K+Y + P EHYGC++DL +AG+L+DA+ ++ M +P+ V +LL ACR + +++LA
Sbjct: 387 KLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLA 446
Query: 404 ERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSG 463
E K ++ LDP Y LL+N+YA KWD +IR M+ RGI+K+PG S IE+
Sbjct: 447 EYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQ 506
Query: 464 IHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPET 500
IH F+ GD SH + + L L L GYVPET
Sbjct: 507 IHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPET 543
Score = 125 bits (315), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 151/333 (45%), Gaps = 44/333 (13%)
Query: 150 FTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQIS 209
F N +I+ Y++ + A ++FD+MP R+ ISWT +++ + K ++ALE M
Sbjct: 97 FLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRD 156
Query: 210 GVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFA 269
V P+ T SVL +C + + + +H ++K+ + +V V + LID++++ G E A
Sbjct: 157 NVRPNVYTYSSVLRSCNGMSDVRM---LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDA 213
Query: 270 RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHA 329
VF M + WNSII GFA N ALE F M++ GF + + T L AC+
Sbjct: 214 LSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGL 273
Query: 330 GLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMP---------- 379
L+E G++ I + + +VD+Y + G LEDAL V M
Sbjct: 274 ALLELGMQAH---VHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTM 330
Query: 380 ------------------------MKPNEVVLGSLLAACRTKG---DIILAERLMKYLVD 412
KPN + + +L AC G D R MK L
Sbjct: 331 ISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYG 390
Query: 413 LDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMK 445
+DP V +Y + ++ GK D A K+ M+
Sbjct: 391 IDP-VREHYGCMIDLLGKAGKLDDAVKLLNEME 422
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 111/232 (47%), Gaps = 26/232 (11%)
Query: 184 TALLNGFVKRGY---FEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRY 240
T LL+ F + Y A++ +Q G+ D T ++ C + + G I R+
Sbjct: 27 TLLLSEFTRLCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRH 86
Query: 241 VLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEA 300
+ + + + N LI++Y + + A Q+F +M +R ++SW ++I ++ +A
Sbjct: 87 LYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKA 146
Query: 301 LEYFNSMQKEGFKPDGVSFTGALTACS--------HAGLIEDGLRYFDIMKKIYRVSPRI 352
LE M ++ +P+ +++ L +C+ H G+I++GL D+ +
Sbjct: 147 LELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLES-DVFVR-------- 197
Query: 353 EHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLA--ACRTKGDIIL 402
++D++++ G EDAL+V + M + + +V S++ A ++ D+ L
Sbjct: 198 ---SALIDVFAKLGEPEDALSVFDEM-VTGDAIVWNSIIGGFAQNSRSDVAL 245
>sp|P0C8Q2|PP323_ARATH Pentatricopeptide repeat-containing protein At4g19191,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E1 PE=2
SV=1
Length = 654
Score = 299 bits (765), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 160/445 (35%), Positives = 243/445 (54%), Gaps = 35/445 (7%)
Query: 46 VQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIH 105
V W S + G +A + M P+ TFI L + C + + L G +IH
Sbjct: 222 VSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQN--PETLTQGRLIH 279
Query: 106 GLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDI 165
LG D+ D+ + N I Y + D
Sbjct: 280 SHAIHLGTDQ-------------------DIEAI-------------NTFISMYSKSEDT 307
Query: 166 ESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNAC 225
SA +FD M R +SWT +++G+ ++G +EAL F M SG +PD VT++S+++ C
Sbjct: 308 CSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGC 367
Query: 226 ANVGTLGIGLWIH-RYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSW 284
G+L G WI R + +DNV +CN LID+YS+CG I AR +F ++T+V+W
Sbjct: 368 GKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTW 427
Query: 285 NSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKK 344
++I G+A+NG EAL+ F+ M +KP+ ++F L AC+H+G +E G YF IMK+
Sbjct: 428 TTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQ 487
Query: 345 IYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAE 404
+Y +SP ++HY C+VDL R G+LE+AL ++ NM KP+ + G+LL AC+ ++ +AE
Sbjct: 488 VYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAE 547
Query: 405 RLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGI 464
+ + L +L+P + + YV +AN+YAA G WDG +IR MK R I+K PG S I++
Sbjct: 548 QAAESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPGESVIQVNGKN 607
Query: 465 HEFMAGDRSHIESEHIYSMLELLSF 489
H F G+ H+E+E IY L LS
Sbjct: 608 HSFTVGEHGHVENEVIYFTLNGLSL 632
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 113/438 (25%), Positives = 186/438 (42%), Gaps = 72/438 (16%)
Query: 48 WTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGL 107
W + +S C+SG +A F M L+ P+ +T +TL+ A F L AM H +
Sbjct: 121 WNAMLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQS-ASFEKSLKLLEAM-HAV 178
Query: 108 VCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIES 167
+LG+D V V + Y K G +D A +VF+A+ RGD
Sbjct: 179 GIRLGVDVQ-VTVANTWISTYGKCGDLDSAKLVFEAID----------------RGD--- 218
Query: 168 AVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACAN 227
R +SW ++ + G +A + M +PD T I++ +C N
Sbjct: 219 ----------RTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQN 268
Query: 228 VGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSI 287
TL G IH + + +++ NT I +YS+ AR +F M RT VSW +
Sbjct: 269 PETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVM 328
Query: 288 IVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYR 347
I G+A G + EAL F++M K G KPD V+ ++ C G +E G ++ D IY
Sbjct: 329 ISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETG-KWIDARADIYG 387
Query: 348 VS-PRIEHYGCIVDLYSRAGRLEDALNVVENMP--------------------------- 379
+ ++D+YS+ G + +A ++ +N P
Sbjct: 388 CKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLF 447
Query: 380 -------MKPNEVVLGSLLAACRTKGDIILAER---LMKYLVDLDPGVDSNYVLLANMYA 429
KPN + ++L AC G + +MK + ++ PG+D +Y + ++
Sbjct: 448 SKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLD-HYSCMVDLLG 506
Query: 430 AVGKWDGAGKIRRTMKGR 447
GK + A ++ R M +
Sbjct: 507 RKGKLEEALELIRNMSAK 524
Score = 122 bits (307), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 103/401 (25%), Positives = 170/401 (42%), Gaps = 82/401 (20%)
Query: 40 STVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLF 99
S+VN W I E+ L F M G PN+ TF + CA +
Sbjct: 15 SSVNA---WNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLAD--VG 69
Query: 100 LGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGY 159
M+H + K ++V VGTA +DM+ K +D A
Sbjct: 70 CCEMVHAHLIKSPF-WSDVFVGTATVDMFVKCNSVDYAA--------------------- 107
Query: 160 MRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTII 219
++F+ MP RDA +W A+L+GF + G+ ++A FREM+++ + PD VT++
Sbjct: 108 ----------KVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVM 157
Query: 220 SVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK- 278
+++ + + +L + +H ++ V V NT I Y +CG ++ A+ VF+ + +
Sbjct: 158 TLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRG 217
Query: 279 -RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACS---------- 327
RT+VSWNS+ ++V G +A + M +E FKPD +F +C
Sbjct: 218 DRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRL 277
Query: 328 ------HAGLIED-------------------GLRYFDIMKKIYRVSPRIEHYGCIVDLY 362
H G +D FDIM VS + ++ Y
Sbjct: 278 IHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVS-----WTVMISGY 332
Query: 363 SRAGRLEDALNVVENMPM---KPNEVVLGSLLAACRTKGDI 400
+ G +++AL + M KP+ V L SL++ C G +
Sbjct: 333 AEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSL 373
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 112/241 (46%), Gaps = 36/241 (14%)
Query: 41 TVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFL 100
T V WT IS + G + EA F M G P+ +T ++L+SGC F S L
Sbjct: 318 TSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGS--LET 375
Query: 101 GAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYM 160
G I G R+NVM+ AL+DMY+K G + A +FD K+ TW MI GY
Sbjct: 376 GKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYA 435
Query: 161 RRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIIS 220
LNG F EAL+ F +M +P+++T ++
Sbjct: 436 --------------------------LNGI-----FLEALKLFSKMIDLDYKPNHITFLA 464
Query: 221 VLNACANVGTLGIGLWIHRYVLKQ--DFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK 278
VL ACA+ G+L G W + +++KQ + + + ++DL R G +E A ++ + M
Sbjct: 465 VLQACAHSGSLEKG-WEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSA 523
Query: 279 R 279
+
Sbjct: 524 K 524
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 298 bits (764), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 160/455 (35%), Positives = 250/455 (54%), Gaps = 35/455 (7%)
Query: 46 VQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIH 105
V WT+ IS + + R +A L F +M G +PN T +++ A C G +H
Sbjct: 127 VTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCC--GHQLH 184
Query: 106 GLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDI 165
G K G D +NV VG+ALLD+Y ++ G +
Sbjct: 185 GFCVKCGFD-SNVHVGSALLDLYTRY-------------------------------GLM 212
Query: 166 ESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNAC 225
+ A +FD + R+ +SW AL+ G +R E+ALE F+ M G P + + S+ AC
Sbjct: 213 DDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGAC 272
Query: 226 ANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWN 285
++ G L G W+H Y++K K NTL+D+Y++ G I AR++F R+ KR +VSWN
Sbjct: 273 SSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWN 332
Query: 286 SIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKI 345
S++ +A +GF EA+ +F M++ G +P+ +SF LTACSH+GL+++G Y+++MKK
Sbjct: 333 SLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD 392
Query: 346 YRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAER 405
+ P HY +VDL RAG L AL +E MP++P + +LL ACR + L
Sbjct: 393 -GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAY 451
Query: 406 LMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIH 465
+++ +LDP +V+L N+YA+ G+W+ A ++R+ MK G++K+P S +EI + IH
Sbjct: 452 AAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIH 511
Query: 466 EFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPET 500
F+A D H + E I E + +K GYVP+T
Sbjct: 512 MFVANDERHPQREEIARKWEEVLAKIKELGYVPDT 546
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 148/318 (46%), Gaps = 40/318 (12%)
Query: 83 FITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFD 142
+ TLL C F + L G ++H + + + R+++++G LL+MYAK G ++ A VF+
Sbjct: 63 YNTLLKKCTVF--KLLIQGRIVHAHILQ-SIFRHDIVMGNTLLNMYAKCGSLEEARKVFE 119
Query: 143 AMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALEC 202
M + TW +I GY + + P +AL
Sbjct: 120 KMPQRDFVTWTTLISGYSQH-----------DRPC--------------------DALLF 148
Query: 203 FREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSR 262
F +M G P+ T+ SV+ A A G +H + +K F NV V + L+DLY+R
Sbjct: 149 FNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTR 208
Query: 263 CGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGA 322
G ++ A+ VF + R VSWN++I G A +ALE F M ++GF+P S+
Sbjct: 209 YGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASL 268
Query: 323 LTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYG--CIVDLYSRAGRLEDALNVVENMPM 380
ACS G +E G M K ++ + ++D+Y+++G + DA + + +
Sbjct: 269 FGACSSTGFLEQGKWVHAYMIK---SGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLA- 324
Query: 381 KPNEVVLGSLLAACRTKG 398
K + V SLL A G
Sbjct: 325 KRDVVSWNSLLTAYAQHG 342
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 126/284 (44%), Gaps = 44/284 (15%)
Query: 205 EMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCG 264
+++ S + D ++L C L G +H ++L+ F+ ++ + NTL+++Y++CG
Sbjct: 50 DLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCG 109
Query: 265 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALT 324
+E AR+VF++M +R V+W ++I G++ + +AL +FN M + G+ P+ + + +
Sbjct: 110 SLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIK 169
Query: 325 A--------CSHA---------------------------GLIEDGLRYFDIMKKIYRVS 349
A C H GL++D FD ++ VS
Sbjct: 170 AAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVS 229
Query: 350 PRIEHYGCIVDLYSRAGRLEDALNVVENM---PMKPNEVVLGSLLAACRTKGDIILAERL 406
+ ++ ++R E AL + + M +P+ SL AC + G + + +
Sbjct: 230 -----WNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWV 284
Query: 407 MKYLVDL-DPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGI 449
Y++ + V L +MYA G A KI + R +
Sbjct: 285 HAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDV 328
>sp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protein At1g06145
OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2
Length = 577
Score = 298 bits (762), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 164/465 (35%), Positives = 253/465 (54%), Gaps = 37/465 (7%)
Query: 68 FTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDM 127
+ RM +P+ T+ +L+ + F S+ G + + K G + V + T L+D
Sbjct: 114 YVRMLRDSVSPSSYTYSSLVKA-SSFASR---FGESLQAHIWKFGFGFH-VKIQTTLIDF 168
Query: 128 YAKFGRMDLATVVFDAMRVKSSFTW-------------------------------NAMI 156
Y+ GR+ A VFD M + W N +I
Sbjct: 169 YSATGRIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLI 228
Query: 157 DGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYV 216
+GYM G++E A +F++MPV+D ISWT ++ G+ + + EA+ F +M G+ PD V
Sbjct: 229 NGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEV 288
Query: 217 TIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRM 276
T+ +V++ACA++G L IG +H Y L+ F +V + + L+D+YS+CG +E A VF +
Sbjct: 289 TMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNL 348
Query: 277 HKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGL 336
K+ L WNSII G A +GF EAL+ F M+ E KP+ V+F TAC+HAGL+++G
Sbjct: 349 PKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGR 408
Query: 337 RYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRT 396
R + M Y + +EHYG +V L+S+AG + +AL ++ NM +PN V+ G+LL CR
Sbjct: 409 RIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDGCRI 468
Query: 397 KGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKK-PGL 455
++++AE L+ L+P Y LL +MYA +W +IR M+ GI+K PG
Sbjct: 469 HKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICPGT 528
Query: 456 SSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPET 500
SSI I H F A D+SH S+ + +L+ + + L GYV ET
Sbjct: 529 SSIRIDKRDHLFAAADKSHSASDEVCLLLDEIYDQMGLAGYVQET 573
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 96/396 (24%), Positives = 157/396 (39%), Gaps = 97/396 (24%)
Query: 165 IESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNA 224
++ AV +M + + AL GFV + +LE + M V P T S++ A
Sbjct: 76 LDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKA 135
Query: 225 CANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSW 284
+ G L H + K F +VK+ TLID YS G I AR+VF M +R ++W
Sbjct: 136 SSFASRFGESLQAH--IWKFGFGFHVKIQTTLIDFYSATGRIREARKVFDEMPERDDIAW 193
Query: 285 NSIIVGF--------------------------AVNGFVG-------------------- 298
+++ + +NG++G
Sbjct: 194 TTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDII 253
Query: 299 ----------------EALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIM 342
EA+ F M +EG PD V+ + ++AC+H G++E G
Sbjct: 254 SWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIG------- 306
Query: 343 KKIYRVSPR----IEHY--GCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRT 396
K+++ + + ++ Y +VD+YS+ G LE AL V N+P K N S++
Sbjct: 307 KEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLP-KKNLFCWNSIIEGLAA 365
Query: 397 KGDIILAERLMKYLVDLD-PGVDSNYVLLANMYAA---VGKWDGAGKIRRTMKGRGIQKK 452
G A+ +K ++ V N V +++ A G D +I R+M I
Sbjct: 366 HG---FAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSM----IDDY 418
Query: 453 PGLSSIE-IGSGIHEFMAGDRSHIESEHIYSMLELL 487
+S++E G +H F IY LEL+
Sbjct: 419 SIVSNVEHYGGMVHLFSKAGL-------IYEALELI 447
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 296 bits (757), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 160/464 (34%), Positives = 263/464 (56%), Gaps = 35/464 (7%)
Query: 46 VQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIH 105
V + + I+ + +SG +A M P+ T ++L +++ + G IH
Sbjct: 208 VSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVD--VIKGKEIH 265
Query: 106 GLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDI 165
G V + G+D ++V +G++L+DMYAK R I
Sbjct: 266 GYVIRKGID-SDVYIGSSLVDMYAKSAR-------------------------------I 293
Query: 166 ESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNAC 225
E + R+F + RD ISW +L+ G+V+ G + EAL FR+M + V+P V SV+ AC
Sbjct: 294 EDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPAC 353
Query: 226 ANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWN 285
A++ TL +G +H YVL+ F N+ + + L+D+YS+CG I+ AR++F RM+ VSW
Sbjct: 354 AHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWT 413
Query: 286 SIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKI 345
+II+G A++G EA+ F M+++G KP+ V+F LTACSH GL+++ YF+ M K+
Sbjct: 414 AIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKV 473
Query: 346 YRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAER 405
Y ++ +EHY + DL RAG+LE+A N + M ++P V +LL++C ++ LAE+
Sbjct: 474 YGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEK 533
Query: 406 LMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIH 465
+ + + +D YVL+ NMYA+ G+W K+R M+ +G++KKP S IE+ + H
Sbjct: 534 VAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTH 593
Query: 466 EFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPETVAGELYEND 509
F++GDRSH + I L+ + ++ GYV +T +G L++ D
Sbjct: 594 GFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADT-SGVLHDVD 636
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/340 (29%), Positives = 169/340 (49%), Gaps = 9/340 (2%)
Query: 44 PTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAM 103
P + W S I ++A F M G P+H F ++L C L G
Sbjct: 69 PVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMD--LRFGES 126
Query: 104 IHGLVCKLGLDRNNVMVGTALLDMYAKF---GRMDLATVVFDAM--RVKSSFTWNAMIDG 158
+HG + +LG+D ++ G AL++MYAK G VFD M R +S + +
Sbjct: 127 VHGFIVRLGMD-CDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAET 185
Query: 159 YMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTI 218
+ I+S R+F+ MP +D +S+ ++ G+ + G +E+AL REM + ++PD T+
Sbjct: 186 CIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTL 245
Query: 219 ISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK 278
SVL + + G IH YV+++ +V + ++L+D+Y++ IE + +VF R++
Sbjct: 246 SSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYC 305
Query: 279 RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRY 338
R +SWNS++ G+ NG EAL F M KP V+F+ + AC+H + G +
Sbjct: 306 RDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQL 365
Query: 339 FDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM 378
+ + I +VD+YS+ G ++ A + + M
Sbjct: 366 HGYVLR-GGFGSNIFIASALVDMYSKCGNIKAARKIFDRM 404
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/367 (23%), Positives = 148/367 (40%), Gaps = 79/367 (21%)
Query: 172 FDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTL 231
F + ++W +++ F + F +AL F EM+ SG PD+ SVL +C + L
Sbjct: 62 FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121
Query: 232 GIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRC---------------------------- 263
G +H ++++ ++ N L+++Y++
Sbjct: 122 RFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDV 181
Query: 264 ---GC-----IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPD 315
C I+ R+VF+ M ++ +VS+N+II G+A +G +AL M KPD
Sbjct: 182 KAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPD 241
Query: 316 GVSFTGALTACS-----------HAGLIEDGLRYFDI-----MKKIYRVSPRIE------ 353
+ + L S H +I G+ D+ + +Y S RIE
Sbjct: 242 SFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDS-DVYIGSSLVDMYAKSARIEDSERVF 300
Query: 354 ---------HYGCIVDLYSRAGRLEDALNVVENM---PMKPNEVVLGSLLAACRTKGDII 401
+ +V Y + GR +AL + M +KP V S++ AC +
Sbjct: 301 SRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLH 360
Query: 402 LAERLMKYLVDLDPGVDSNYVL---LANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSI 458
L ++L Y+ L G SN + L +MY+ G A KI M + + ++I
Sbjct: 361 LGKQLHGYV--LRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRM---NVLDEVSWTAI 415
Query: 459 EIGSGIH 465
+G +H
Sbjct: 416 IMGHALH 422
Score = 32.3 bits (72), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 33/72 (45%)
Query: 256 LIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPD 315
+I +Y+ + A +F+ + +++W S+I F +AL F M+ G PD
Sbjct: 45 VISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPD 104
Query: 316 GVSFTGALTACS 327
F L +C+
Sbjct: 105 HNVFPSVLKSCT 116
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 296 bits (757), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 164/462 (35%), Positives = 259/462 (56%), Gaps = 10/462 (2%)
Query: 43 NPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGA 102
NP + WT+ I + G+ EA + M P TF LL C L LG
Sbjct: 113 NPFL-WTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKD--LNLGR 169
Query: 103 MIHGLVCKL-GLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMR 161
H +L G V VG ++DMY K +D A VFD M + +W +I Y R
Sbjct: 170 QFHAQTFRLRGF--CFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYAR 227
Query: 162 RGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISV 221
G++E A +F+ +P +D ++WTA++ GF + +EALE F M+ SG+ D VT+
Sbjct: 228 VGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGY 287
Query: 222 LNACANVGTLGIGLWIHRYVLKQDFK--DNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR 279
++ACA +G + K + D+V + + LID+YS+CG +E A VF M+ +
Sbjct: 288 ISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNK 347
Query: 280 TLVSWNSIIVGFAVNGFVGEALEYFNSM-QKEGFKPDGVSFTGALTACSHAGLIEDGLRY 338
+ +++S+I+G A +G EAL F+ M + KP+ V+F GAL ACSH+GL++ G +
Sbjct: 348 NVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQV 407
Query: 339 FDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKG 398
FD M + + V P +HY C+VDL R GRL++AL +++ M ++P+ V G+LL ACR
Sbjct: 408 FDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHN 467
Query: 399 DIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSI 458
+ +AE ++L +L+P + NY+LL+N+YA+ G W G ++R+ +K +G++K P +S +
Sbjct: 468 NPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWV 527
Query: 459 EIGSG-IHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPE 499
+G +H+F G+ +H S I LE L L + GY P+
Sbjct: 528 VDKNGQMHKFFPGNLNHPMSNKIQDKLEELVERLTVLGYQPD 569
Score = 120 bits (300), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 147/340 (43%), Gaps = 63/340 (18%)
Query: 104 IHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRG 163
IHG V + GLD++ ++ T L+ K G +D Y RR
Sbjct: 68 IHGHVLRKGLDQSCYIL-TKLIRTLTKLG---------------------VPMDPYARR- 104
Query: 164 DIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLN 223
+ + + R+ WTA++ G+ G F+EA+ + M+ + P T ++L
Sbjct: 105 -------VIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLK 157
Query: 224 ACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVS 283
AC + L +G H + V V NT+ID+Y +C I+ AR+VF M +R ++S
Sbjct: 158 ACGTMKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVIS 217
Query: 284 WNSII-------------------------------VGFAVNGFVGEALEYFNSMQKEGF 312
W +I GFA N EALEYF+ M+K G
Sbjct: 218 WTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGI 277
Query: 313 KPDGVSFTGALTACSHAGLIEDGLRYFDIMKKI-YRVSPRIEHYGCIVDLYSRAGRLEDA 371
+ D V+ G ++AC+ G + R I +K Y S + ++D+YS+ G +E+A
Sbjct: 278 RADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEA 337
Query: 372 LNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLV 411
+NV +M K N S++ T G A L Y+V
Sbjct: 338 VNVFMSMNNK-NVFTYSSMILGLATHGRAQEALHLFHYMV 376
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 97/206 (47%), Gaps = 19/206 (9%)
Query: 217 TIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCI--EFARQVFQ 274
++IS L+ C N+ + IH +VL++ + + LI ++ G +AR+V +
Sbjct: 51 SLISKLDDCINLNQIK---QIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIE 107
Query: 275 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIED 334
+ R W ++I G+A+ G EA+ + M+KE P +F+ L AC G ++D
Sbjct: 108 PVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKAC---GTMKD 164
Query: 335 GLRYFDIMKKIYRVSPRIEHY------GCIVDLYSRAGRLEDALNVVENMPMKPNEVVLG 388
++ ++ + + R+ + ++D+Y + ++ A V + MP + + +
Sbjct: 165 ----LNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPER-DVISWT 219
Query: 389 SLLAACRTKGDIILAERLMKYLVDLD 414
L+AA G++ A L + L D
Sbjct: 220 ELIAAYARVGNMECAAELFESLPTKD 245
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 294 bits (752), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 155/449 (34%), Positives = 244/449 (54%), Gaps = 34/449 (7%)
Query: 46 VQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIH 105
V WT+ I R+G +EA + F M G N +T +++L + G +H
Sbjct: 170 VTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVED--VRFGRSVH 227
Query: 106 GLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDI 165
GL + G + +V +G++L+DMY K D DA +V
Sbjct: 228 GLYLETGRVKCDVFIGSSLVDMYGKCSCYD------DAQKV------------------- 262
Query: 166 ESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNAC 225
FDEMP R+ ++WTAL+ G+V+ F++ + F EM S V P+ T+ SVL+AC
Sbjct: 263 ------FDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSAC 316
Query: 226 ANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWN 285
A+VG L G +H Y++K + N TLIDLY +CGC+E A VF+R+H++ + +W
Sbjct: 317 AHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWT 376
Query: 286 SIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKI 345
++I GFA +G+ +A + F +M P+ V+F L+AC+H GL+E+G R F MK
Sbjct: 377 AMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGR 436
Query: 346 YRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAER 405
+ + P+ +HY C+VDL+ R G LE+A ++E MPM+P VV G+L +C D L +
Sbjct: 437 FNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKY 496
Query: 406 LMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIH 465
++ L P Y LLAN+Y+ WD ++R+ MK + + K PG S IE+ +
Sbjct: 497 AASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVKGKLC 556
Query: 466 EFMA-GDRSHIESEHIYSMLELLSFDLKL 493
EF+A D+ +ES+ +Y L+ + ++L
Sbjct: 557 EFIAFDDKKPLESDDLYKTLDTVGVQMRL 585
Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 91/333 (27%), Positives = 157/333 (47%), Gaps = 40/333 (12%)
Query: 150 FTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQIS 209
F N++I GY G + A R+FD +D ++WTA+++GFV+ G EA+ F EM+ +
Sbjct: 139 FVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKT 198
Query: 210 GVEPDYVTIISVLNACANVGTLGIGLWIH-RYVLKQDFKDNVKVCNTLIDLYSRCGCIEF 268
GV + +T++SVL A V + G +H Y+ K +V + ++L+D+Y +C C +
Sbjct: 199 GVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDD 258
Query: 269 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSH 328
A++VF M R +V+W ++I G+ + + + F M K P+ + + L+AC+H
Sbjct: 259 AQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAH 318
Query: 329 AGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMK------- 381
G + G R M K + ++DLY + G LE+A+ V E + K
Sbjct: 319 VGALHRGRRVHCYMIK-NSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTA 377
Query: 382 ---------------------------PNEVVLGSLLAACRTKGDIILAERL---MKYLV 411
PNEV ++L+AC G + RL MK
Sbjct: 378 MINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRF 437
Query: 412 DLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTM 444
+++P D +Y + +++ G + A + M
Sbjct: 438 NMEPKAD-HYACMVDLFGRKGLLEEAKALIERM 469
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 100/213 (46%), Gaps = 15/213 (7%)
Query: 203 FREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSR 262
+R M+ +GV P T +L A + H +++K + V N+LI YS
Sbjct: 92 YRHMRRNGVIPSRHTFPPLLKAVFKLRDSN-PFQFHAHIVKFGLDSDPFVRNSLISGYSS 150
Query: 263 CGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGA 322
G +FA ++F + +V+W ++I GF NG EA+ YF M+K G + ++
Sbjct: 151 SGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSV 210
Query: 323 LTACSHAGLIEDGLRYFDIMKKIY----RVSPRIEHYGCIVDLYSRAGRLEDALNVVENM 378
L A AG +ED +R+ + +Y RV + +VD+Y + +DA V + M
Sbjct: 211 LKA---AGKVED-VRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEM 266
Query: 379 PMKPNEVVLGSLLAA-----CRTKGDIILAERL 406
P + N V +L+A C KG ++ E L
Sbjct: 267 PSR-NVVTWTALIAGYVQSRCFDKGMLVFEEML 298
>sp|P0C8Q7|PP369_ARATH Pentatricopeptide repeat-containing protein At5g08305
OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1
Length = 534
Score = 294 bits (752), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 159/452 (35%), Positives = 264/452 (58%), Gaps = 7/452 (1%)
Query: 38 SKSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQC 97
SK + P W I S ++ + +M G P+H+T+ L+ + ++
Sbjct: 66 SKLSDPPNYGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRK 125
Query: 98 LFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMID 157
L G +H V K GL+ + + + L+ MY F A +FD M K+ TWN+++D
Sbjct: 126 L--GGSLHCSVVKSGLEWD-LFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILD 182
Query: 158 GYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREM-QISGVEPDYV 216
Y + GD+ SA +FDEM RD ++W+++++G+VKRG + +ALE F +M ++ + + V
Sbjct: 183 AYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEV 242
Query: 217 TIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQR- 275
T++SV+ ACA++G L G +HRY+L V + +LID+Y++CG I A VF R
Sbjct: 243 TMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRA 302
Query: 276 -MHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIED 334
+ + + WN+II G A +GF+ E+L+ F+ M++ PD ++F L ACSH GL+++
Sbjct: 303 SVKETDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVKE 362
Query: 335 GLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAAC 394
+F +K+ P+ EHY C+VD+ SRAG ++DA + + MP+KP +LG+LL C
Sbjct: 363 AWHFFKSLKE-SGAEPKSEHYACMVDVLSRAGLVKDAHDFISEMPIKPTGSMLGALLNGC 421
Query: 395 RTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPG 454
G++ LAE + K L++L P D YV LAN+YA ++ A +R M+ +G++K G
Sbjct: 422 INHGNLELAETVGKKLIELQPHNDGRYVGLANVYAINKQFRAARSMREAMEKKGVKKIAG 481
Query: 455 LSSIEIGSGIHEFMAGDRSHIESEHIYSMLEL 486
S +++ H F+A D++H S+ IY++L+L
Sbjct: 482 HSILDLDGTRHRFIAHDKTHFHSDKIYAVLQL 513
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 115/257 (44%), Gaps = 33/257 (12%)
Query: 163 GDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVL 222
GD++ A + ++ W ++ GF E+++ + +M G+ PD++T ++
Sbjct: 56 GDVDYAYKFLSKLSDPPNYGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLM 115
Query: 223 NACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLI------------------------- 257
+ + + +G +H V+K + ++ +CNTLI
Sbjct: 116 KSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLV 175
Query: 258 ------DLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEG 311
D Y++ G + AR VF M +R +V+W+S+I G+ G +ALE F+ M + G
Sbjct: 176 TWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMG 235
Query: 312 -FKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLED 370
K + V+ + AC+H G + G + ++ I ++D+Y++ G + D
Sbjct: 236 SSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQTS-LIDMYAKCGSIGD 294
Query: 371 ALNVVENMPMKPNEVVL 387
A +V +K + ++
Sbjct: 295 AWSVFYRASVKETDALM 311
Score = 37.4 bits (85), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 42/211 (19%), Positives = 87/211 (41%), Gaps = 27/211 (12%)
Query: 261 SRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFT 320
S G +++A + ++ WN +I GF+ + +++ + M + G PD +++
Sbjct: 53 SSSGDVDYAYKFLSKLSDPPNYGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYP 112
Query: 321 GALTACS-----------HAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLE 369
+ + S H +++ GL + ++ + I YG D S
Sbjct: 113 FLMKSSSRLSNRKLGGSLHCSVVKSGLEW-----DLFICNTLIHMYGSFRDQAS------ 161
Query: 370 DALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYA 429
A + + MP K N V S+L A GD++ A + + + D S+ + + Y
Sbjct: 162 -ARKLFDEMPHK-NLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMI---DGYV 216
Query: 430 AVGKWDGAGKIRRTMKGRGIQKKPGLSSIEI 460
G+++ A +I M G K ++ + +
Sbjct: 217 KRGEYNKALEIFDQMMRMGSSKANEVTMVSV 247
>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300
OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1
Length = 857
Score = 293 bits (749), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 161/456 (35%), Positives = 256/456 (56%), Gaps = 35/456 (7%)
Query: 45 TVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMI 104
V +T+ IS + +G ++ F + +PN IT +++L + L LG +
Sbjct: 406 VVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLA--LKLGREL 463
Query: 105 HGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGD 164
HG + K G D N +G A++DMYAK GRM+L
Sbjct: 464 HGFIIKKGFD-NRCNIGCAVIDMYAKCGRMNL---------------------------- 494
Query: 165 IESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNA 224
A +F+ + RD +SW +++ + A++ FR+M +SG+ D V+I + L+A
Sbjct: 495 ---AYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSA 551
Query: 225 CANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSW 284
CAN+ + G IH +++K +V +TLID+Y++CG ++ A VF+ M ++ +VSW
Sbjct: 552 CANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSW 611
Query: 285 NSIIVGFAVNGFVGEALEYFNSM-QKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMK 343
NSII +G + ++L F+ M +K G +PD ++F +++C H G +++G+R+F M
Sbjct: 612 NSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMT 671
Query: 344 KIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILA 403
+ Y + P+ EHY C+VDL+ RAGRL +A V++MP P+ V G+LL ACR ++ LA
Sbjct: 672 EDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELA 731
Query: 404 ERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSG 463
E L+DLDP YVL++N +A +W+ K+R MK R +QK PG S IEI
Sbjct: 732 EVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSWIEINKR 791
Query: 464 IHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPE 499
H F++GD +H ES HIYS+L L +L+L GY+P+
Sbjct: 792 THLFVSGDVNHPESSHIYSLLNSLLGELRLEGYIPQ 827
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 107/412 (25%), Positives = 196/412 (47%), Gaps = 41/412 (9%)
Query: 45 TVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMI 104
TV W IS + +SG + E+ F M G P+ ITF +LL + F + L I
Sbjct: 305 TVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFEN--LEYCKQI 362
Query: 105 HGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGD 164
H + M + LD+ F +A+ID Y +
Sbjct: 363 HCYI----------MRHSISLDI----------------------FLTSALIDAYFKCRG 390
Query: 165 IESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNA 224
+ A +F + D + +TA+++G++ G + ++LE FR + + P+ +T++S+L
Sbjct: 391 VSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPV 450
Query: 225 CANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSW 284
+ L +G +H +++K+ F + + +ID+Y++CG + A ++F+R+ KR +VSW
Sbjct: 451 IGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSW 510
Query: 285 NSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKK 344
NS+I A + A++ F M G D VS + AL+AC++ G M K
Sbjct: 511 NSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIK 570
Query: 345 IYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAE 404
+ ++ + ++D+Y++ G L+ A+NV + M K N V S++AAC G + +
Sbjct: 571 -HSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEK-NIVSWNSIIAACGNHGKLKDSL 628
Query: 405 RLMKYLVDLDPGVDSNYVLLANMYAA---VGKWDGAGKIRRTM-KGRGIQKK 452
L +V+ G+ + + + ++ VG D + R+M + GIQ +
Sbjct: 629 CLFHEMVE-KSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQ 679
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 101/417 (24%), Positives = 193/417 (46%), Gaps = 50/417 (11%)
Query: 39 KSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCL 98
+S++ P W S IS R+G + +A + +M G +P+ TF L+ C +
Sbjct: 100 RSSIRP---WNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKN--- 153
Query: 99 FLGA-MIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMID 157
F G + V LG+D N F +++I
Sbjct: 154 FKGIDFLSDTVSSLGMDCNE--------------------------------FVASSLIK 181
Query: 158 GYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVT 217
Y+ G I+ ++FD + +D + W +LNG+ K G + ++ F M++ + P+ VT
Sbjct: 182 AYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVT 241
Query: 218 IISVLNACANVGTLGIGLWIHRYVLKQ--DFKDNVKVCNTLIDLYSRCGCIEFARQVFQR 275
VL+ CA+ + +G+ +H V+ DF+ ++K N+L+ +YS+CG + A ++F+
Sbjct: 242 FDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIK--NSLLSMYSKCGRFDDASKLFRM 299
Query: 276 MHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDG 335
M + V+WN +I G+ +G + E+L +F M G PD ++F+ L + S +E
Sbjct: 300 MSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYC 359
Query: 336 LR-YFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAAC 394
+ + IM+ + +S I ++D Y + + A N+ + VV ++++
Sbjct: 360 KQIHCYIMR--HSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCN-SVDVVVFTAMISGY 416
Query: 395 RTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQK 451
G I + + ++LV + + N + L ++ +G A K+ R + G I+K
Sbjct: 417 LHNGLYIDSLEMFRWLVKVK--ISPNEITLVSILPVIGIL-LALKLGRELHGFIIKK 470
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 112/266 (42%), Gaps = 48/266 (18%)
Query: 221 VLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR- 279
+L AC+N L G +H +++ + ++ +Y+ CG ++F R+ R
Sbjct: 41 LLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRR 100
Query: 280 -TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTAC------------ 326
++ WNSII F NG + +AL ++ M G PD +F + AC
Sbjct: 101 SSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFL 160
Query: 327 --------------SHAGLIEDGLRY--FDIMKKIYRVSPRIEHYGCIV-----DLYSRA 365
+ LI+ L Y D+ K++ R+ C++ + Y++
Sbjct: 161 SDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLF---DRVLQKDCVIWNVMLNGYAKC 217
Query: 366 GRLEDALNVVENMPM---KPNEVVLGSLLAACRTKGDIILAERLMKYL----VDLDPGVD 418
G L+ + M M PN V +L+ C +K I L +L + VD + +
Sbjct: 218 GALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIK 277
Query: 419 SNYVLLANMYAAVGKWDGAGKIRRTM 444
++ L +MY+ G++D A K+ R M
Sbjct: 278 NS---LLSMYSKCGRFDDASKLFRMM 300
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/318 (21%), Positives = 136/318 (42%), Gaps = 45/318 (14%)
Query: 124 LLDMYAKFGRMDLATVVFDAMRVKSSFT--WNAMIDGYMRRGDIESAVRMFDEMPVRDAI 181
+L MYA G +F + ++ S WN++I ++R G
Sbjct: 76 ILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNG------------------ 117
Query: 182 SWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYV 241
LLN +AL + +M GV PD T ++ AC + ++ V
Sbjct: 118 ----LLN---------QALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTV 164
Query: 242 LKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 301
N V ++LI Y G I+ ++F R+ ++ V WN ++ G+A G + +
Sbjct: 165 SSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVI 224
Query: 302 EYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCI--- 358
+ F+ M+ + P+ V+F L+ C+ LI+ G++ ++ V ++ G I
Sbjct: 225 KGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLV-----VVSGVDFEGSIKNS 279
Query: 359 -VDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV 417
+ +YS+ GR +DA + M + + V +++ G ++ E L + + GV
Sbjct: 280 LLSMYSKCGRFDDASKLFRMMS-RADTVTWNCMISGYVQSG--LMEESLTFFYEMISSGV 336
Query: 418 DSNYVLLANMYAAVGKWD 435
+ + +++ +V K++
Sbjct: 337 LPDAITFSSLLPSVSKFE 354
>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580
OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1
Length = 882
Score = 292 bits (747), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 156/455 (34%), Positives = 254/455 (55%), Gaps = 34/455 (7%)
Query: 45 TVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMI 104
TV W S IS + +SG + EA F M + +HIT++ L+S
Sbjct: 373 TVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLIS---------------- 416
Query: 105 HGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGD 164
V T L D+ KFG+ + + + + S + NA+ID Y + G+
Sbjct: 417 ---------------VSTRLADL--KFGKGLHSNGIKSGICIDLSVS-NALIDMYAKCGE 458
Query: 165 IESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNA 224
+ ++++F M D ++W +++ V+ G F L+ +M+ S V PD T + L
Sbjct: 459 VGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPM 518
Query: 225 CANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSW 284
CA++ +G IH +L+ ++ +++ N LI++YS+CGC+E + +VF+RM +R +V+W
Sbjct: 519 CASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTW 578
Query: 285 NSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKK 344
+I + + G +ALE F M+K G PD V F + ACSH+GL+++GL F+ MK
Sbjct: 579 TGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKT 638
Query: 345 IYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAE 404
Y++ P IEHY C+VDL SR+ ++ A ++ MP+KP+ + S+L ACRT GD+ AE
Sbjct: 639 HYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAE 698
Query: 405 RLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGI 464
R+ + +++L+P +L +N YAA+ KWD IR+++K + I K PG S IE+G +
Sbjct: 699 RVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNV 758
Query: 465 HEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPE 499
H F +GD S +SE IY LE+L + GY+P+
Sbjct: 759 HVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPD 793
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 101/382 (26%), Positives = 170/382 (44%), Gaps = 74/382 (19%)
Query: 104 IHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRG 163
IH LV LGLD ++ G L+D Y+ F + VF RR
Sbjct: 26 IHALVISLGLDSSDFFSGK-LIDKYSHFREPASSLSVF-------------------RRV 65
Query: 164 DIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLN 223
P ++ W +++ F K G F EALE + +++ S V PD T SV+
Sbjct: 66 S-----------PAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIK 114
Query: 224 ACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVS 283
ACA + +G ++ +L F+ ++ V N L+D+YSR G + ARQVF M R LVS
Sbjct: 115 ACAGLFDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVS 174
Query: 284 WNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIE---------- 333
WNS+I G++ +G+ EALE ++ ++ PD + + L A + +++
Sbjct: 175 WNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFAL 234
Query: 334 -------------------------DGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRL 368
D R FD M VS Y ++ Y + +
Sbjct: 235 KSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVS-----YNTMICGYLKLEMV 289
Query: 369 EDALNV-VENM-PMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYV-LLA 425
E+++ + +EN+ KP+ + + S+L AC D+ LA+ + Y++ ++S +L
Sbjct: 290 EESVRMFLENLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILI 349
Query: 426 NMYAAVGKWDGAGKIRRTMKGR 447
++YA G A + +M+ +
Sbjct: 350 DVYAKCGDMITARDVFNSMECK 371
Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 98/365 (26%), Positives = 164/365 (44%), Gaps = 51/365 (13%)
Query: 42 VNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLG 101
V V W S IS + G EA + + P+ T ++L + + G
Sbjct: 169 VRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNL--LVVKQG 226
Query: 102 AMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMR 161
+HG K G+ + V+V L+ MY KF R A VFD M V+ S ++N MI GY++
Sbjct: 227 QGLHGFALKSGV-NSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLK 285
Query: 162 RGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISV 221
+E +VRMF E + +PD +T+ SV
Sbjct: 286 LEMVEESVRMFLE--------------------------------NLDQFKPDLLTVSSV 313
Query: 222 LNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTL 281
L AC ++ L + +I+ Y+LK F V N LID+Y++CG + AR VF M +
Sbjct: 314 LRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDT 373
Query: 282 VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSH-------AGLIED 334
VSWNSII G+ +G + EA++ F M + D +++ ++ + GL +
Sbjct: 374 VSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSN 433
Query: 335 GLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAAC 394
G++ + + ++D+Y++ G + D+L + +M + V ++++AC
Sbjct: 434 GIK--------SGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTG-DTVTWNTVISAC 484
Query: 395 RTKGD 399
GD
Sbjct: 485 VRFGD 489
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 147/303 (48%), Gaps = 13/303 (4%)
Query: 134 MDLATVVFDAMRVKSSFTW-----NAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLN 188
+ LA +++ M +K+ F N +ID Y + GD+ +A +F+ M +D +SW ++++
Sbjct: 323 LSLAKYIYNYM-LKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIIS 381
Query: 189 GFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKD 248
G+++ G EA++ F+ M I + D++T + +++ + L G +H +K
Sbjct: 382 GYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICI 441
Query: 249 NVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQ 308
++ V N LID+Y++CG + + ++F M V+WN++I G L+ M+
Sbjct: 442 DLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMR 501
Query: 309 KEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRL 368
K PD +F L C+ G + + + ++ ++++YS+ G L
Sbjct: 502 KSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLR-FGYESELQIGNALIEMYSKCGCL 560
Query: 369 EDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG--VDSNYVLLAN 426
E++ V E M + + V ++ A G+ E+ ++ D++ V + V +A
Sbjct: 561 ENSSRVFERMSRR-DVVTWTGMIYAYGMYGE---GEKALETFADMEKSGIVPDSVVFIAI 616
Query: 427 MYA 429
+YA
Sbjct: 617 IYA 619
>sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein At4g14050,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2
SV=3
Length = 612
Score = 292 bits (747), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 158/433 (36%), Positives = 250/433 (57%), Gaps = 20/433 (4%)
Query: 78 PNHITFITLLSGCADFPSQCLFLGAMIHG--LVCKLGLDR--NNVMVGTALLDMYAKFGR 133
P+ F L+ CA+ LG++ HG + C + N+ +V ++L+DMYAK G
Sbjct: 103 PDDFVFSALVKACAN-------LGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGL 155
Query: 134 MDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKR 193
++ A VFD++RVK++ +W AM+ GY + G E A+ +F +PV++ SWTAL++GFV+
Sbjct: 156 LNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQS 215
Query: 194 GYFEEALECFREMQISGVEP-DYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKV 252
G EA F EM+ V+ D + + S++ ACAN+ G +H V+ F V +
Sbjct: 216 GKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFI 275
Query: 253 CNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGF 312
N LID+Y++C + A+ +F RM R +VSW S+IVG A +G +AL ++ M G
Sbjct: 276 SNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGV 335
Query: 313 KPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDAL 372
KP+ V+F G + ACSH G +E G F M K Y + P ++HY C++DL R+G L++A
Sbjct: 336 KPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAE 395
Query: 373 NVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVD----LDPGVDSNYVLLANMY 428
N++ MP P+E +LL+AC+ +G + R+ +LV DP S Y+LL+N+Y
Sbjct: 396 NLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDP---STYILLSNIY 452
Query: 429 AAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEFMAGDRSHIESEHIYSMLELLS 488
A+ W + RR + ++K PG SS+E+ F AG+ SH E I+ +L+ L
Sbjct: 453 ASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLLKKLE 512
Query: 489 FDLKL-CGYVPET 500
++++ GYVP+T
Sbjct: 513 EEMRIRNGYVPDT 525
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 104/196 (53%), Gaps = 8/196 (4%)
Query: 153 NAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISG-V 211
N +++ Y + G A+++FDEMP RD I+W ++L + + L F + S +
Sbjct: 42 NTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGL 101
Query: 212 EPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQ 271
PD +++ ACAN+G++ G +H + + ++ ++ V ++L+D+Y++CG + A+
Sbjct: 102 RPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKA 161
Query: 272 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGL 331
VF + + +SW +++ G+A +G EALE F + + S+T ++ +G
Sbjct: 162 VFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNL----YSWTALISGFVQSG- 216
Query: 332 IEDGLRYFDIMKKIYR 347
GL F + ++ R
Sbjct: 217 --KGLEAFSVFTEMRR 230
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/345 (22%), Positives = 141/345 (40%), Gaps = 82/345 (23%)
Query: 48 WTSSISRHCRSGRIAEAALEFTRMTLHGTNP-NHITFITLLSGCADFPSQCLFLGAMIHG 106
WT+ IS +SG+ EA FT M + + + +++ CA+ + G +HG
Sbjct: 205 WTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAAS--IAGRQVHG 262
Query: 107 LVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIE 166
LV LG D + V + AL+DMYAK + A +F MR + +W ++I G + G E
Sbjct: 263 LVIALGFD-SCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAE 321
Query: 167 SAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACA 226
A+ ++D+M GV+P+ VT + ++ AC+
Sbjct: 322 KALALYDDMVSH-------------------------------GVKPNEVTFVGLIYACS 350
Query: 227 NVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR-----TL 281
+VG +E R++FQ M K +L
Sbjct: 351 HVGF-----------------------------------VEKGRELFQSMTKDYGIRPSL 375
Query: 282 VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDI 341
+ ++ +G + EA ++M F PD ++ L+AC G + G+R D
Sbjct: 376 QHYTCLLDLLGRSGLLDEAENLIHTMP---FPPDEPTWAALLSACKRQGRGQMGIRIADH 432
Query: 342 MKKIYRVSPRIEHYGCIVDLYSRA---GRLEDALNVVENMPMKPN 383
+ +++ Y + ++Y+ A G++ +A + M ++ +
Sbjct: 433 LVSSFKLKDP-STYILLSNIYASASLWGKVSEARRKLGEMEVRKD 476
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
Query: 222 LNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTL 281
L CA TL +H +++K + NTL+++Y +CG A QVF M R
Sbjct: 10 LQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDH 69
Query: 282 VSWNSIIVGFAVNGFVGEAL-EYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLR-YF 339
++W S++ G+ L + + G +PD F+ + AC++ G I+ G + +
Sbjct: 70 IAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHC 129
Query: 340 DIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMK 381
+ Y ++ +VD+Y++ G L A V +++ +K
Sbjct: 130 HFIVSEYANDEVVK--SSLVDMYAKCGLLNSAKAVFDSIRVK 169
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 75/178 (42%), Gaps = 13/178 (7%)
Query: 45 TVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGA-- 102
V WTS I + G+ +A + M HG PN +TF+ L+ C S F+
Sbjct: 304 VVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYAC----SHVGFVEKGR 359
Query: 103 -MIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV-KSSFTWNAMIDGYM 160
+ + G+ R ++ T LLD+ + G +D A + M TW A++
Sbjct: 360 ELFQSMTKDYGI-RPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACK 418
Query: 161 RRGDIESAVRMFDEM----PVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPD 214
R+G + +R+ D + ++D ++ L N + + + E R++ V D
Sbjct: 419 RQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKD 476
>sp|Q9C8L6|PPR80_ARATH Pentatricopeptide repeat-containing protein At1g53600,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E63 PE=2
SV=2
Length = 717
Score = 291 bits (746), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 165/485 (34%), Positives = 265/485 (54%), Gaps = 35/485 (7%)
Query: 41 TVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHG-TNPNHITFITLLSGCADFPSQCLF 99
T + WT+ I + ++G + F RM G N T + C DF
Sbjct: 235 TERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVR--YR 292
Query: 100 LGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGY 159
G+ IHGLV ++ L+ + + +G +L+ MY+K G M A VF M+ K S +WN++I G
Sbjct: 293 EGSQIHGLVSRMPLEFD-LFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGL 351
Query: 160 MRR-------------------------------GDIESAVRMFDEMPVRDAISWTALLN 188
++R G+I V +F MP +D I+WTA+++
Sbjct: 352 VQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNITWTAMIS 411
Query: 189 GFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKD 248
FV GY+EEAL F +M V P+ T SVL+A A++ L GL IH V+K + +
Sbjct: 412 AFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVN 471
Query: 249 NVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQ 308
++ V N+L+ +Y +CG A ++F + + +VS+N++I G++ NGF +AL+ F+ ++
Sbjct: 472 DLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLE 531
Query: 309 KEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRL 368
G +P+GV+F L+AC H G ++ G +YF MK Y + P +HY C+VDL R+G L
Sbjct: 532 SSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLL 591
Query: 369 EDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMY 428
+DA N++ MP KP+ V GSLL+A +T + LAE K L++L+P + YV+L+ +Y
Sbjct: 592 DDASNLISTMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLY 651
Query: 429 AAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEFMAGDRSHIESEHIYSMLELLS 488
+ +GK +I K + I+K PG S I + +H F+AGD S + E I L+++
Sbjct: 652 SIIGKNRDCDRIMNIKKSKRIKKDPGSSWIILKGEVHNFLAGDESQLNLEEIGFTLKMIR 711
Query: 489 FDLKL 493
+++L
Sbjct: 712 KEMEL 716
Score = 128 bits (322), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 118/450 (26%), Positives = 197/450 (43%), Gaps = 48/450 (10%)
Query: 22 NQNLTTTPQISIQTNNSKSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLH-GTNPNH 80
N NL I Q +N V W + IS + +G++++A F M + T+ N
Sbjct: 63 NGNLQEAEAIFRQMSN-----RSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVTTSYNA 117
Query: 81 ITFITLLSGC---------ADFPSQ-CLFLGAMIHGLVCKLGLDR------------NNV 118
+ + + C D P + + MI G V D +
Sbjct: 118 MITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYAETPVKFRDS 177
Query: 119 MVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVR 178
+ LL Y + G+ + A VF M VK + ++M+ GY + G I A +FD M R
Sbjct: 178 VASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRMTER 237
Query: 179 DAISWTALLNGFVKRGYFEEALECFREMQISG-VEPDYVTIISVLNACANVGTLGIGLWI 237
+ I+WTA+++G+ K G+FE+ F M+ G V+ + T+ + AC + G I
Sbjct: 238 NVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQI 297
Query: 238 HRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFV 297
H V + + ++ + N+L+ +YS+ G + A+ VF M + VSWNS+I G +
Sbjct: 298 HGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQI 357
Query: 298 GEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGC 357
EA E F M + D VS+T + S G I + F +M + ++ +
Sbjct: 358 SEAYELFEKMPGK----DMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNIT-----WTA 408
Query: 358 IVDLYSRAGRLEDALNVVENMPMK---PNEVVLGSLLAACRTKGDII----LAERLMKYL 410
++ + G E+AL M K PN S+L+A + D+I + R++K
Sbjct: 409 MISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMN 468
Query: 411 VDLDPGVDSNYVLLANMYAAVGKWDGAGKI 440
+ D V ++ L +MY G + A KI
Sbjct: 469 IVNDLSVQNS---LVSMYCKCGNTNDAYKI 495
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/333 (24%), Positives = 138/333 (41%), Gaps = 57/333 (17%)
Query: 125 LDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVR------ 178
+ +A+ G + A +F M +S +W AMI Y G + A ++FDEMPVR
Sbjct: 57 ISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVTTSYN 116
Query: 179 --------------------------DAISWTALLNGFVKRGYFEEALECFREMQISGVE 212
+A+S+ ++ GFV+ G F+EA + E + +
Sbjct: 117 AMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYAETPVKFRD 176
Query: 213 PDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFK-DNVKVCNTLIDLYSRCGCIEFARQ 271
SV + G L G W + Q V C++++ Y + G I AR
Sbjct: 177 -------SVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARS 229
Query: 272 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEG-FKPDGVSFTGALTACSHAG 330
+F RM +R +++W ++I G+ GF + F M++EG K + + AC
Sbjct: 230 LFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKAC---- 285
Query: 331 LIEDGLRYFD---IMKKIYRVSPRIEHY--GCIVDLYSRAGRLEDALNVVENMPMKPNEV 385
D +RY + I + R+ + + ++ +YS+ G + +A V M K + V
Sbjct: 286 --RDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNK-DSV 342
Query: 386 VLGSLLAACRTKGDIILAERLMKYLVDLDPGVD 418
SL+ + I A L + + PG D
Sbjct: 343 SWNSLITGLVQRKQISEAYELFEKM----PGKD 371
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 34/223 (15%)
Query: 150 FTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQIS 209
F N+ I + R G+++ A +F +M R +SW A+++ + + G +A + F EM +
Sbjct: 51 FQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVR 110
Query: 210 GVEPDYVTIISVL--NAC----------------------ANVGTLGIGLWIHRYVLKQD 245
V Y +I+ + N C G + G + L +
Sbjct: 111 -VTTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYAE 169
Query: 246 ----FKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 301
F+D+V N L+ Y R G A +VFQ M + +VS +S++ G+ G + +A
Sbjct: 170 TPVKFRDSV-ASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDAR 228
Query: 302 EYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKK 344
F+ M + +++T + AG EDG F M++
Sbjct: 229 SLFDRMTERNV----ITWTAMIDGYFKAGFFEDGFGLFLRMRQ 267
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 18/144 (12%)
Query: 253 CNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGF 312
CN+ I ++R G ++ A +F++M R++VSW ++I +A NG + +A + F+ M
Sbjct: 53 CNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEM----- 107
Query: 313 KPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEH-----YGCIVDLYSRAGR 367
P V+ S+ +I ++ + K Y + I Y ++ + RAGR
Sbjct: 108 -PVRVT-------TSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGR 159
Query: 368 LEDALNVVENMPMKPNEVVLGSLL 391
++A + P+K + V ++L
Sbjct: 160 FDEAEFLYAETPVKFRDSVASNVL 183
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 291 bits (745), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 159/455 (34%), Positives = 256/455 (56%), Gaps = 25/455 (5%)
Query: 48 WTSSISRHCRSGRIAEAALEFTRMTLH-GTNPNHITFITLLSGCADFPSQCLFLGAMIHG 106
W + I+ + ++ EA L F M G N T ++ C S IHG
Sbjct: 372 WNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVR--SGAFSRKEAIHG 429
Query: 107 LVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIE 166
V K GLDR+ V L+DMY++ G++D+A +F M + TWN MI GY+ E
Sbjct: 430 FVVKRGLDRDR-FVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHE 488
Query: 167 SAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACA 226
A+ + +M L V +G +L +P+ +T++++L +CA
Sbjct: 489 DALLLLHKMQN---------LERKVSKGASRVSL-----------KPNSITLMTILPSCA 528
Query: 227 NVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNS 286
+ L G IH Y +K + +V V + L+D+Y++CGC++ +R+VF ++ ++ +++WN
Sbjct: 529 ALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNV 588
Query: 287 IIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIY 346
II+ + ++G EA++ M +G KP+ V+F ACSH+G++++GLR F +MK Y
Sbjct: 589 IIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDY 648
Query: 347 RVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEV-VLGSLLAACRTKGDIILAER 405
V P +HY C+VDL RAGR+++A ++ MP N+ SLL A R ++ + E
Sbjct: 649 GVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEI 708
Query: 406 LMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIH 465
+ L+ L+P V S+YVLLAN+Y++ G WD A ++RR MK +G++K+PG S IE G +H
Sbjct: 709 AAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVH 768
Query: 466 EFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPET 500
+F+AGD SH +SE + LE L ++ GYVP+T
Sbjct: 769 KFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDT 803
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 120/496 (24%), Positives = 203/496 (40%), Gaps = 97/496 (19%)
Query: 10 LPQPFLPHQQNPNQNL-TTTPQISIQTNNSKSTVNPTV---------QWTSSISRHCRSG 59
P LP ++ + L TP + + S + P++ W + RS
Sbjct: 17 FPSQLLPFSRHKHPYLLRATPTSATEDVASAVSGAPSIFISQSRSPEWWIDLLRSKVRSN 76
Query: 60 RIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVM 119
+ EA L + M + G P++ F LL AD Q + LG IH V K G ++V
Sbjct: 77 LLREAVLTYVDMIVLGIKPDNYAFPALLKAVADL--QDMELGKQIHAHVYKFGYGVDSVT 134
Query: 120 VGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRD 179
V L+++Y K G D + ++FD + R+
Sbjct: 135 VANTLVNLYRKCG-------------------------------DFGAVYKVFDRISERN 163
Query: 180 AISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGT---LGIGLW 236
+SW +L++ +E ALE FR M VEP T++SV+ AC+N+ L +G
Sbjct: 164 QVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQ 223
Query: 237 IHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 296
+H Y L++ + N + NTL+ +Y + G + ++ + R LV+WN+++ N
Sbjct: 224 VHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQ 282
Query: 297 VGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIE----------------------- 333
+ EALEY M EG +PD + + L ACSH ++
Sbjct: 283 LLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGS 342
Query: 334 -------------DGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDAL----NVVE 376
G R FD M +I + ++ YS+ ++AL + E
Sbjct: 343 ALVDMYCNCKQVLSGRRVFDGM-----FDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEE 397
Query: 377 NMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVL---LANMYAAVGK 433
+ + N + ++ AC G E + ++V G+D + + L +MY+ +GK
Sbjct: 398 SAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVV--KRGLDRDRFVQNTLMDMYSRLGK 455
Query: 434 WDGAGKIRRTMKGRGI 449
D A +I M+ R +
Sbjct: 456 IDIAMRIFGKMEDRDL 471
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 123/472 (26%), Positives = 203/472 (43%), Gaps = 91/472 (19%)
Query: 46 VQWTSSISRHCRSGRIAEAALEFTR-MTLHGTNPNHITFITLLSGCADFPSQCLFLGAMI 104
V W + +S C++ ++ EA LE+ R M L G P+ T ++L C+ + L G +
Sbjct: 268 VTWNTVLSSLCQNEQLLEA-LEYLREMVLEGVEPDEFTISSVLPACSHL--EMLRTGKEL 324
Query: 105 HGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGD 164
H K G N VG+AL+DM Y
Sbjct: 325 HAYALKNGSLDENSFVGSALVDM-------------------------------YCNCKQ 353
Query: 165 IESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQIS-GVEPDYVTIISVLN 223
+ S R+FD M R W A++ G+ + + +EAL F M+ S G+ + T+ V+
Sbjct: 354 VLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVP 413
Query: 224 ACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVS 283
AC G IH +V+K+ + V NTL+D+YSR G I+ A ++F +M R LV+
Sbjct: 414 ACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVT 473
Query: 284 WNSIIVGFAVNGFVGEALEYFNSMQ-----------KEGFKPDGVSFTGALTACS----- 327
WN++I G+ + +AL + MQ + KP+ ++ L +C+
Sbjct: 474 WNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSAL 533
Query: 328 ------HAGLIEDGLRY-----------------FDIMKKIYRVSPR--IEHYGCIVDLY 362
HA I++ L + +K++ P+ + + I+ Y
Sbjct: 534 AKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAY 593
Query: 363 SRAGRLEDALNVVENM---PMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDS 419
G ++A++++ M +KPNEV S+ AAC G + R+ Y++ D GV+
Sbjct: 594 GMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIF-YVMKPDYGVEP 652
Query: 420 NYVLLANMYAAVGKWDG-AGKIRRT-----MKGRGIQKKPGLSSIEIGSGIH 465
+ ++ YA V G AG+I+ M R K SS+ S IH
Sbjct: 653 S----SDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIH 700
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 290 bits (743), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 161/444 (36%), Positives = 248/444 (55%), Gaps = 37/444 (8%)
Query: 68 FTRMTLHGTNPNHITFITLLSGCADFPSQC----LFLGAMIHGLVCKLGLDRNNVMVGTA 123
+ +M G + T+ +L C S+C L G IH + + G ++V + T
Sbjct: 166 YWKMNRIGVESDRFTYTYVLKACV--ASECTVNHLMKGKEIHAHLTRRGYS-SHVYIMTT 222
Query: 124 LLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISW 183
L+DMYA+FG +D A+ VF M V++ +W+AMI Y + G A+R F EM
Sbjct: 223 LVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREM-------- 274
Query: 184 TALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLK 243
RE + S P+ VT++SVL ACA++ L G IH Y+L+
Sbjct: 275 -------------------MRETKDSS--PNSVTMVSVLQACASLAALEQGKLIHGYILR 313
Query: 244 QDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEY 303
+ + V + L+ +Y RCG +E ++VF RMH R +VSWNS+I + V+G+ +A++
Sbjct: 314 RGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQI 373
Query: 304 FNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYS 363
F M G P V+F L ACSH GL+E+G R F+ M + + + P+IEHY C+VDL
Sbjct: 374 FEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLG 433
Query: 364 RAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVL 423
RA RL++A +V++M +P V GSLL +CR G++ LAER + L L+P NYVL
Sbjct: 434 RANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVL 493
Query: 424 LANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEFMAGDRSHIESEHIYSM 483
LA++YA WD ++++ ++ RG+QK PG +E+ ++ F++ D + E I++
Sbjct: 494 LADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAF 553
Query: 484 LELLSFDLKLCGYVPETVAGELYE 507
L L+ D+K GY+P+T G LYE
Sbjct: 554 LVKLAEDMKEKGYIPQT-KGVLYE 576
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 115/485 (23%), Positives = 192/485 (39%), Gaps = 92/485 (18%)
Query: 11 PQPFLPHQQNPN---QNLTTTPQISIQTNNSK--STVNPTVQWTSSISRHCRSGRIAEAA 65
PQ P N ++ P S+ NN S + I C+ G++ +A
Sbjct: 7 PQVIQPTYHTVNFLPRSPLKPPSCSVALNNPSISSGAGAKISNNQLIQSLCKEGKLKQA- 65
Query: 66 LEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALL 125
R+ ++P+ T+ L+ C S L +H + G D++ + T L+
Sbjct: 66 ---IRVLSQESSPSQQTYELLILCCGHRSS--LSDALRVHRHILDNGSDQDPFL-ATKLI 119
Query: 126 DMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTA 185
MY+ G +D A ++FD+ R W A
Sbjct: 120 GMYSDLGSVDYAR-------------------------------KVFDKTRKRTIYVWNA 148
Query: 186 LLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACA----NVGTLGIGLWIHRYV 241
L G+ EE L + +M GVE D T VL AC V L G IH ++
Sbjct: 149 LFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHL 208
Query: 242 LKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEAL 301
++ + +V + TL+D+Y+R GC+++A VF M R +VSW+++I +A NG EAL
Sbjct: 209 TRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEAL 268
Query: 302 EYFNSMQKE--GFKPDGVSFTGALTACSHAGLIEDG--LRYFDIMKKIYRVSPRIEHYGC 357
F M +E P+ V+ L AC+ +E G + + + + + + P I
Sbjct: 269 RTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVI---SA 325
Query: 358 IVDLYSRAGRLE-------------------------------DALNVVENM---PMKPN 383
+V +Y R G+LE A+ + E M P
Sbjct: 326 LVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPT 385
Query: 384 EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVD---SNYVLLANMYAAVGKWDGAGKI 440
V S+L AC +G + +RL + + D G+ +Y + ++ + D A K+
Sbjct: 386 PVTFVSVLGACSHEGLVEEGKRLFETMWR-DHGIKPQIEHYACMVDLLGRANRLDEAAKM 444
Query: 441 RRTMK 445
+ M+
Sbjct: 445 VQDMR 449
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 3/127 (2%)
Query: 45 TVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMI 104
V W S IS + G +A F M +G +P +TF+++L C+ + G +
Sbjct: 351 VVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSH--EGLVEEGKRL 408
Query: 105 HGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVK-SSFTWNAMIDGYMRRG 163
+ + + + ++D+ + R+D A + MR + W +++ G
Sbjct: 409 FETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHG 468
Query: 164 DIESAVR 170
++E A R
Sbjct: 469 NVELAER 475
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 189,090,078
Number of Sequences: 539616
Number of extensions: 8010574
Number of successful extensions: 25323
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 17587
Number of HSP's gapped (non-prelim): 2419
length of query: 509
length of database: 191,569,459
effective HSP length: 122
effective length of query: 387
effective length of database: 125,736,307
effective search space: 48659950809
effective search space used: 48659950809
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)